BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021730
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 29 RPAVILPGLGNNSGDYQRLQLTLKDYGVPTVVAEVSRFDWLR------------------ 70
RP V + GL ++G ++ + G P + +D +
Sbjct: 23 RPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEF 82
Query: 71 --NAAGLVDPNYWRATL---RPRPVLDWYFSRMNDAIQKAKEFTPGGKLSLIGHSAGGWL 125
N + ++DP L R R ++D FSR++ I +A + K+ L+GHS G +
Sbjct: 83 GLNISQIIDPETLDKILSKSRER-LIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFF 141
Query: 126 ARVYM 130
Y+
Sbjct: 142 LVRYV 146
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 29 RPAVILPGLGNNSGDYQRLQLTLKDYGVPTVVAEVSRFDWLR------------------ 70
RP V + GL ++G ++ + G P + +D +
Sbjct: 23 RPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEF 82
Query: 71 --NAAGLVDPNYWRATL---RPRPVLDWYFSRMNDAIQKAKEFTPGGKLSLIGHSAGGWL 125
N + ++DP L R R ++D FSR++ I +A + K+ L+GHS G +
Sbjct: 83 GLNISQIIDPETLDKILSKSRER-LIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFF 141
Query: 126 ARVYM 130
Y+
Sbjct: 142 LVRYV 146
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 29 RPAVILPGLGNNSGDYQRLQLTLKDYGVPTVVAEVSRFDWLR------------------ 70
RP V + GL ++G ++ + G P + +D +
Sbjct: 23 RPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEF 82
Query: 71 --NAAGLVDPNYWRATL---RPRPVLDWYFSRMNDAIQKAKEFTPGGKLSLIGHSAGGWL 125
N + ++DP L R R ++D FSR++ I +A + K+ L+GHS G +
Sbjct: 83 GLNISQIIDPETLDKILSKSRER-LIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFF 141
Query: 126 ARVYM 130
Y+
Sbjct: 142 LVRYV 146
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 29 RPAVILPGLGNNSGDYQRLQLTLKDYGVPTVVAEVSRFDWLR------------------ 70
RP V + GL ++G ++ + G P + +D +
Sbjct: 23 RPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEF 82
Query: 71 --NAAGLVDPNYWRATL---RPRPVLDWYFSRMNDAIQKAKEFTPGGKLSLIGHSAGGWL 125
N + ++DP L R R ++D FSR++ I +A + K+ L+GH+ G +
Sbjct: 83 GLNISQIIDPETLDKILSKSRER-LIDETFSRLDRVIDEALAESGADKVDLVGHAMGTFF 141
Query: 126 ARVYM 130
Y+
Sbjct: 142 LVRYV 146
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 19 SSPATSHFQCRPAVILPGLGNNSGDYQRLQLTLKDYGVPTVVAEVSRFD 67
S+P T+ FQ +LPGL +++ L LK + + +V + S D
Sbjct: 440 SNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTD 488
>pdb|1SU0|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.3 A
Resolution
Length = 159
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 208 TVAIDTDQPISEVATVDNK-TISTATSTTFRARIVGQGYKQVCGQADVWGDGV 259
TV D D+ I ++A N TISTA+S+ ++G+ ++ AD++ + V
Sbjct: 47 TVKFDEDK-IEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMV 98
>pdb|2CB9|A Chain A, Crystal Structure Of The Thioesterase Domain Of The
Fengycin Biosynthesis Cluster
pdb|2CBG|A Chain A, Crystal Structure Of The Pmsf-Inhibited Thioesterase
Domain Of The Fengycin Biosynthesis Cluster
Length = 244
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 96 SRMNDAIQKAKEFTPGGKLSLIGHSAGGWLA 126
SR+ + + E P G L+G+SAGG LA
Sbjct: 61 SRIEQYVSRITEIQPEGPYVLLGYSAGGNLA 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,092,883
Number of Sequences: 62578
Number of extensions: 365402
Number of successful extensions: 1047
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 21
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)