BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021733
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 122/285 (42%), Gaps = 35/285 (12%)
Query: 31 YPLDT--LRIQQQSSTSG-----------SAFSILRRTVATEGPQALYRGMGAPLASVTF 77
+PLDT +R+Q Q + G + V TEGP++LY G+ A L
Sbjct: 20 FPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGL----- 74
Query: 78 QNAMVFQIYAILSRALDPSIS-----AKEPPSYKVVALAGVGTGAIQSLILSPVELVKIR 132
Q M F A + L S+ E LAG TGA+ + P ++VK+R
Sbjct: 75 QRQMSF---ASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVR 131
Query: 133 LQLQGSNYTRSKQADRYKGPTDVARSILRREGLRGIYRGLSITVLRDAPSHGFYFWTYEC 192
Q Q R+ RY+ + ++I R EG+RG+++G S V R+A + TY+
Sbjct: 132 FQAQA----RAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDL 187
Query: 193 MREQLHPGCRKNGQESLQTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSPSSVLKYNGIV 252
+++ L + L + AG + V P+DVVKTR S++ +Y+
Sbjct: 188 IKDTLLKANLMT--DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM---NSALGQYHSAG 242
Query: 253 DCFYKSVKADGYSVLWRGLGAAVARAFVVNGAIFAAYEVALRCLF 297
C ++ +G ++G + R N +F YE R L
Sbjct: 243 HCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 7/188 (3%)
Query: 108 VALAGVGTGA-IQSLILSPVELVKIRLQLQGSN--YTRSKQADRYKGPTDVARSILRREG 164
V G GT A I LI P++ K+RLQ+QG + R+ + +Y+G +++R EG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 165 LRGIYRGLSITVLRDAPSHGFYFWTYECMREQLHPGCRKNGQESLQTMLVAGGLAGVASW 224
R +Y GL + R Y+ +++ G G + + L+AG G +
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG---IGSRLLAGSTTGALAV 119
Query: 225 VCCYPLDVVKTRLQAQS-PSSVLKYNGIVDCFYKSVKADGYSVLWRGLGAAVARAFVVNG 283
P DVVK R QAQ+ +Y V+ + + +G LW+G VAR +VN
Sbjct: 120 AVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNC 179
Query: 284 AIFAAYEV 291
A Y++
Sbjct: 180 AELVTYDL 187
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 32 PLDTLRIQQQSSTSGS-------AFSILRRTVATEGPQALYRGMGAPLASVTFQNAMVFQ 84
P+D ++ + +S G A ++LR+ EGP+A Y+G + N ++F
Sbjct: 222 PVDVVKTRYMNSALGQYHSAGHCALTMLRK----EGPRAFYKGFMPSFLRLGSWNVVMFV 277
Query: 85 IYAILSRALDPSISAKEPP 103
Y L RAL + ++E P
Sbjct: 278 TYEQLKRALMAAYQSREAP 296
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 5/187 (2%)
Query: 110 LAGVGTGAIQSLILSPVELVKIRLQLQGSNYTRSKQADRYKGPTDVARSILRREGLRGIY 169
LAG AI ++P+E VK+ LQ+Q ++ S + +YKG D I + +G +
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAE-KQYKGIIDCVVRIPKEQGFLSFW 70
Query: 170 RGLSITVLRDAPSHGFYFWTYECMREQLHPGCRKNGQ--ESLQTMLVAGGLAGVASWVCC 227
RG V+R P+ F + ++ G ++ Q L +GG AG S
Sbjct: 71 RGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFV 130
Query: 228 YPLDVVKTRLQAQ--SPSSVLKYNGIVDCFYKSVKADGYSVLWRGLGAAVARAFVVNGAI 285
YPLD +TRL A ++ ++ G+ +C K K+DG L++G +V + A
Sbjct: 131 YPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190
Query: 286 FAAYEVA 292
F Y+ A
Sbjct: 191 FGVYDTA 197
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 11/170 (6%)
Query: 111 AGVGTGAIQSLILSPVELVKIRLQLQGSNYTRSKQADRYKGPTDVARSILRREGLRGIYR 170
+G GA + P++ + RL ++ + + G + I + +GLRG+Y+
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRL---AADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQ 174
Query: 171 GLSITVLRDAPSHGFYFWTYECMREQL-HPGCRKNGQESLQTMLVAGGLAGVASWVCCYP 229
G +++V YF Y+ + L P KN + + ++A + VA V YP
Sbjct: 175 GFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---KN-VHIIVSWMIAQTVTAVAGLV-SYP 229
Query: 230 LDVVKTRLQAQS--PSSVLKYNGIVDCFYKSVKADGYSVLWRGLGAAVAR 277
D V+ R+ QS + + Y G VDC+ K K +G ++G + V R
Sbjct: 230 FDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279
>pdb|1RV9|A Chain A, Crystal Structure Of Neisseria Meningitidis Protein
Nmb0706, Pfam Duf152
Length = 259
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 155 VARSILRREGLRGIYRGLSITVLR 178
+AR IL+REG+ G+Y G TVL
Sbjct: 209 LARLILKREGVGGVYGGTHCTVLE 232
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 122 ILSPVELVKIRLQLQGSNYTRSKQADRYKGP-TDVARSILRREGLRGIYR------GLSI 174
+L+P + ++ + N A+ GP T A ILR +G+ I G+++
Sbjct: 291 VLAPAAIEEVITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTV 350
Query: 175 TVLRDAPSHGFYFWTYECMREQLHPGCRK 203
+ + Y+WT E +RE+L K
Sbjct: 351 SYFEWVQNINGYYWTEEEVREKLDKKMTK 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,939,964
Number of Sequences: 62578
Number of extensions: 293240
Number of successful extensions: 793
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 10
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)