Query 021733
Match_columns 308
No_of_seqs 148 out of 1911
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.5E-56 5.2E-61 386.3 21.5 275 14-300 3-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.5E-55 5.1E-60 379.3 26.5 280 9-296 4-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 5.6E-36 1.9E-40 257.3 19.1 195 103-298 5-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.9E-35 1E-39 253.4 17.9 190 108-300 4-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 61.9 14 0.00047 24.0 4.4 44 262-305 32-75 (81)
6 1pp9_G Ubiquinol-cytochrome C 56.7 21 0.00073 23.1 4.6 45 262-306 32-76 (81)
7 3f2e_A SIRV coat protein; four 26.1 93 0.0032 19.7 3.7 36 246-281 6-45 (100)
8 3cx5_H Cytochrome B-C1 complex 24.9 66 0.0023 21.4 3.1 41 262-302 42-82 (93)
9 2acm_A Mucin-1; auto-catalytic 15.7 24 0.00083 21.1 -0.5 20 249-268 40-59 (66)
10 1y9i_A Low temperature require 15.4 1.1E+02 0.0039 23.0 2.9 44 181-224 111-157 (178)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.5e-56 Score=386.30 Aligned_cols=275 Identities=25% Similarity=0.377 Sum_probs=249.2
Q ss_pred hhhhhhhHHHHHHHHhcCchhhhHHhhhcCC-------------CCCHHHHHHHHHHhhCccccccCCchhHHHHHHHHH
Q 021733 14 REFVAGGFGGIAGVVSGYPLDTLRIQQQSST-------------SGSAFSILRRTVATEGPQALYRGMGAPLASVTFQNA 80 (308)
Q Consensus 14 ~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~-------------~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 80 (308)
.++++|++|++++.+++||+|++|+|+|.+. +.+..+.+++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999863 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHhHHHHHhhhhcccHHHHHHHHHhcCCCCccccCCCCCCCHHHHHHHHH
Q 021733 81 MVFQIYAILSRALDPSISAKEPPSYKVVALAGVGTGAIQSLILSPVELVKIRLQLQGSNYTRSKQADRYKGPTDVARSIL 160 (308)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~i~ 160 (308)
++|.+||.+++.+.+.. ...+....+++|++||+++.++++|+|+||+|+|.+... ....+|++..+++++|+
T Consensus 83 i~f~~ye~~k~~~~~~~---~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~----~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS---EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA----GGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp HTTTHHHHHHHHHSCCC---SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC----CCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC---cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc----CCCCCCCCHHHHHHHHH
Confidence 99999999999987531 246778899999999999999999999999999998643 12356899999999999
Q ss_pred HhhchhhhccccchhhhhhcccchhHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhchHHHHHHHHhcC
Q 021733 161 RREGLRGIYRGLSITVLRDAPSHGFYFWTYECMREQLHPGCRKNGQESLQTMLVAGGLAGVASWVCCYPLDVVKTRLQAQ 240 (308)
Q Consensus 161 ~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~i~~r~q~~ 240 (308)
+++|++|||||+.+++++.+|..+++|.+||.+|+.+.+... ........+++|++|++++.++++|+|+||+|||.+
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~--~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~ 233 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL--MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNS 233 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS--CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998865432 234567889999999999999999999999999998
Q ss_pred CCCCccccccHHHHHHHHHHhhchhhhccchHHHHHHHHHHhhHHHHHHHHHHHHHhhcC
Q 021733 241 SPSSVLKYNGIVDCFYKSVKADGYSVLWRGLGAAVARAFVVNGAIFAAYEVALRCLFHNG 300 (308)
Q Consensus 241 ~~~~~~~~~~~~~~~~~i~~~eG~~~l~~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 300 (308)
.. ..|.++++|+++|+++||++|||||+.|+++|.+|..+++|.+||.+|+.+.+..
T Consensus 234 ~~---~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 234 AL---GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp CS---SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred cc---cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 65 4699999999999999999999999999999999999999999999998876543
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.5e-55 Score=379.32 Aligned_cols=280 Identities=19% Similarity=0.329 Sum_probs=240.7
Q ss_pred cchhhhhhhhhhHHHHHHHHhcCchhhhHHhhhcCC----------CCCHHHHHHHHHHhhCccccccCCchhHHHHHHH
Q 021733 9 ASSWGREFVAGGFGGIAGVVSGYPLDTLRIQQQSST----------SGSAFSILRRTVATEGPQALYRGMGAPLASVTFQ 78 (308)
Q Consensus 9 ~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~----------~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 78 (308)
..+.+.++++|++|++++.+++||+|++|+|+|.+. +.+..+.+++++++||+++||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 346678999999999999999999999999999763 5789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCC--CchHHHHHHHhHHHHHhhhhcccHHHHHHHHHhcCCCCccccCCCCCCCHHHHH
Q 021733 79 NAMVFQIYAILSRALDPSISAKEP--PSYKVVALAGVGTGAIQSLILSPVELVKIRLQLQGSNYTRSKQADRYKGPTDVA 156 (308)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~ 156 (308)
.+++|.+||.+++.+.+..+.... ......+++|++|++++.++++|+|+||+|+|++... .....+|+++.+++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK---GAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS---STTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC---CCcCcCCCCHHHHH
Confidence 999999999999854221111111 2346778999999999999999999999999998543 12245689999999
Q ss_pred HHHHHhhchhhhccccchhhhhhcccchhHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 021733 157 RSILRREGLRGIYRGLSITVLRDAPSHGFYFWTYECMREQLHPGCRKNGQESLQTMLVAGGLAGVASWVCCYPLDVVKTR 236 (308)
Q Consensus 157 ~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~i~~r 236 (308)
++|++++|++|||||+.+++++.+|..+++|.+||.+|+.+.+. ........+++|+++++++.++++|+|+||+|
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr 236 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRR 236 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC----CCccHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 99999999999999999999999999999999999999976432 22456778999999999999999999999999
Q ss_pred HhcCCCC--CccccccHHHHHHHHHHhhchhhhccchHHHHHHHHHHhhHHHHHHHHHHHHH
Q 021733 237 LQAQSPS--SVLKYNGIVDCFYKSVKADGYSVLWRGLGAAVARAFVVNGAIFAAYEVALRCL 296 (308)
Q Consensus 237 ~q~~~~~--~~~~~~~~~~~~~~i~~~eG~~~l~~G~~~~~~~~~~~~~~~~~~y~~~~~~~ 296 (308)
||.+... ....|.++++|+++|+++||++|||||+.|+++|. +..+++|.+||.+|+++
T Consensus 237 ~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 237 MMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9987543 22479999999999999999999999999999996 57899999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.6e-36 Score=257.30 Aligned_cols=195 Identities=28% Similarity=0.435 Sum_probs=167.9
Q ss_pred CchHHHHHHHhHHHHHhhhhcccHHHHHHHHHhcCCCCccccCCCCCCCHHHHHHHHHHhhchhhhccccchhhhhhccc
Q 021733 103 PSYKVVALAGVGTGAIQSLILSPVELVKIRLQLQGSNYTRSKQADRYKGPTDVARSILRREGLRGIYRGLSITVLRDAPS 182 (308)
Q Consensus 103 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 182 (308)
.+....+++|++|++++.++++|+|+||+|+|.+....+ ......|+++.++++++++++|++|||||+.+++++.+|.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ-ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS-CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc-cccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 456678999999999999999999999999999864311 1223568999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCC--chHHHHHHHHHHHHHHHHHhhchHHHHHHHHhcCCCC--CccccccHHHHHHHH
Q 021733 183 HGFYFWTYECMREQLHPGCRKNGQ--ESLQTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSPS--SVLKYNGIVDCFYKS 258 (308)
Q Consensus 183 ~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~P~d~i~~r~q~~~~~--~~~~~~~~~~~~~~i 258 (308)
.+++|.+||.+|+.+....+.... ......+++|++|++++.++++|+|+||+|+|.+... ....|.++++|+++|
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 999999999999954332221211 2346789999999999999999999999999998542 135789999999999
Q ss_pred HHhhchhhhccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 021733 259 VKADGYSVLWRGLGAAVARAFVVNGAIFAAYEVALRCLFH 298 (308)
Q Consensus 259 ~~~eG~~~l~~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 298 (308)
+++||++|||||+.+++++.+|..++.|.+||.+|+.+.+
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999997754
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.9e-35 Score=253.36 Aligned_cols=190 Identities=26% Similarity=0.449 Sum_probs=168.5
Q ss_pred HHHHHhHHHHHhhhhcccHHHHHHHHHhcCCCCcc--ccCCCCCCCHHHHHHHHHHhhchhhhccccchhhhhhcccchh
Q 021733 108 VALAGVGTGAIQSLILSPVELVKIRLQLQGSNYTR--SKQADRYKGPTDVARSILRREGLRGIYRGLSITVLRDAPSHGF 185 (308)
Q Consensus 108 ~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~ 185 (308)
.+++|++|++++.++++|+|+||+|+|.+...... .....+|+++++++++|++++|+++||||+.+.+++.+|..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999998653110 0123468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhchHHHHHHHHhcCCCC-CccccccHHHHHHHHHHhhch
Q 021733 186 YFWTYECMREQLHPGCRKNGQESLQTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSPS-SVLKYNGIVDCFYKSVKADGY 264 (308)
Q Consensus 186 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~i~~r~q~~~~~-~~~~~~~~~~~~~~i~~~eG~ 264 (308)
+|.+||.+|+.+.+..+ ..+....+++|.+|++++.++++|+|+||+|+|.+... ....|.+.++|+++|+++||+
T Consensus 84 ~f~~ye~~k~~~~~~~~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp TTTHHHHHHHHHSCCCS---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCCc---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 99999999999875421 35678899999999999999999999999999998642 235789999999999999999
Q ss_pred hhhccchHHHHHHHHHHhhHHHHHHHHHHHHHhhcC
Q 021733 265 SVLWRGLGAAVARAFVVNGAIFAAYEVALRCLFHNG 300 (308)
Q Consensus 265 ~~l~~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 300 (308)
+|||||+.+++++.+|..++.|.+||.+|+.+.+..
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999987654
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=61.87 E-value=14 Score=24.04 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=36.3
Q ss_pred hchhhhccchHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCCCC
Q 021733 262 DGYSVLWRGLGAAVARAFVVNGAIFAAYEVALRCLFHNGSIQTE 305 (308)
Q Consensus 262 eG~~~l~~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 305 (308)
.|+-..+|-+...++..+|..++...+|+..++.......+...
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnpa 75 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPA 75 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGG
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566677777888999999999999999999999888777654
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=56.74 E-value=21 Score=23.13 Aligned_cols=45 Identities=13% Similarity=0.086 Sum_probs=36.2
Q ss_pred hchhhhccchHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCCCCC
Q 021733 262 DGYSVLWRGLGAAVARAFVVNGAIFAAYEVALRCLFHNGSIQTEN 306 (308)
Q Consensus 262 eG~~~l~~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 306 (308)
.|+...+|-+...++..+|..++.+.+|+..++.......+...+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp~d 76 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPAA 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC--
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 456666777778888899999999999999999998888876543
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=26.09 E-value=93 Score=19.68 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=25.7
Q ss_pred cccccHHHHHHHHHHhhch----hhhccchHHHHHHHHHH
Q 021733 246 LKYNGIVDCFYKSVKADGY----SVLWRGLGAAVARAFVV 281 (308)
Q Consensus 246 ~~~~~~~~~~~~i~~~eG~----~~l~~G~~~~~~~~~~~ 281 (308)
+++.+.-+-+..++.+.|+ +..|.|+.....|..-.
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaralnr 45 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALNR 45 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHHHh
Confidence 4677777777888888876 56888998887776543
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=24.88 E-value=66 Score=21.40 Aligned_cols=41 Identities=7% Similarity=-0.052 Sum_probs=33.5
Q ss_pred hchhhhccchHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCC
Q 021733 262 DGYSVLWRGLGAAVARAFVVNGAIFAAYEVALRCLFHNGSI 302 (308)
Q Consensus 262 eG~~~l~~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 302 (308)
.|+...+|-+...++..+|..++...+|+..++.......+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~~K 82 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYSK 82 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTSG
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHhcc
Confidence 35666777777788889999999999999999988776655
No 9
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=15.73 E-value=24 Score=21.13 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.8
Q ss_pred ccHHHHHHHHHHhhchhhhc
Q 021733 249 NGIVDCFYKSVKADGYSVLW 268 (308)
Q Consensus 249 ~~~~~~~~~i~~~eG~~~l~ 268 (308)
+++.+.+.+|++++|+.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56888899999999988875
No 10
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=15.43 E-value=1.1e+02 Score=23.01 Aligned_cols=44 Identities=9% Similarity=-0.053 Sum_probs=29.0
Q ss_pred ccchhHHHHHHHHHHHhcCCCCC---CCCchHHHHHHHHHHHHHHHH
Q 021733 181 PSHGFYFWTYECMREQLHPGCRK---NGQESLQTMLVAGGLAGVASW 224 (308)
Q Consensus 181 ~~~~~~~~~y~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~ 224 (308)
......|..||..|.......++ ..-...+..+++|++|++++.
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 45677788889988654433221 223567888999888877653
Done!