Query 021734
Match_columns 308
No_of_seqs 141 out of 255
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 05:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05553 DUF761: Cotton fibre 99.7 4.8E-17 1E-21 113.1 5.5 38 270-307 1-38 (38)
2 PF14364 DUF4408: Domain of un 99.5 9.6E-15 2.1E-19 99.4 1.4 34 42-75 1-34 (34)
3 PF11485 DUF3211: Protein of u 53.0 16 0.00034 32.2 3.4 26 270-295 108-133 (136)
4 COG4420 Predicted membrane pro 32.0 15 0.00033 34.1 -0.0 33 40-72 65-102 (191)
5 cd00795 NOS_oxygenase_euk Nitr 22.2 1.2E+02 0.0026 31.3 4.3 23 269-291 50-72 (412)
6 PF14376 Haem_bd: Haem-binding 19.5 44 0.00096 28.7 0.5 26 189-215 87-112 (137)
7 PF07240 Turandot: Stress-indu 19.3 1.1E+02 0.0024 25.1 2.7 19 272-290 30-48 (85)
8 PRK04405 prsA peptidylprolyl i 15.7 2E+02 0.0043 27.6 4.0 23 268-290 74-96 (298)
9 PRK03002 prsA peptidylprolyl i 15.3 2.2E+02 0.0048 26.9 4.2 40 267-306 69-112 (285)
10 PF03993 DUF349: Domain of Unk 14.3 5.2E+02 0.011 19.0 5.4 34 273-306 6-42 (77)
No 1
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=99.68 E-value=4.8e-17 Score=113.07 Aligned_cols=38 Identities=63% Similarity=1.069 Sum_probs=36.6
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021734 270 SQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRG 307 (308)
Q Consensus 270 ~~~evd~rAE~FI~kF~~qlrLQRqeS~~~y~eml~Rg 307 (308)
+++|||++||+||+|||+|||||||+|+++|+||++||
T Consensus 1 ~~~evd~rAe~FI~~f~~qlrlqr~~S~~ry~eml~Rg 38 (38)
T PF05553_consen 1 SDDEVDRRAEEFIAKFREQLRLQRQESLQRYQEMLARG 38 (38)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999999999999998
No 2
>PF14364 DUF4408: Domain of unknown function (DUF4408)
Probab=99.48 E-value=9.6e-15 Score=99.42 Aligned_cols=34 Identities=59% Similarity=1.136 Sum_probs=32.9
Q ss_pred chhHHHHHhhhcCCCeeeeeeheehhhhhhcccc
Q 021734 42 APVIWSSFVSWLKPPYLYIIINAIIIIIAASSHL 75 (308)
Q Consensus 42 lP~~ws~~~swltPpyLfi~~N~IIi~I~asSk~ 75 (308)
+|++|+++++||+|||||+++|+||++|+++|||
T Consensus 1 ~p~l~~~~~s~ltP~~Lfv~~N~IIi~i~~~S~~ 34 (34)
T PF14364_consen 1 FPSLWSSLRSWLTPPYLFVIVNLIIITIVASSRF 34 (34)
T ss_pred CccHHHHHHHhcCCCeehhhhhhHHHHhhhhccC
Confidence 5999999999999999999999999999999986
No 3
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=53.03 E-value=16 Score=32.22 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.7
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHH
Q 021734 270 SQDELNRRVEAFIKKFNDEMRLQRQE 295 (308)
Q Consensus 270 ~~~evd~rAE~FI~kF~~qlrLQRqe 295 (308)
+.--++++.+.|.++|.|.+||+|-.
T Consensus 108 ~~~~i~~~i~~f~~~ldE~IRlERIK 133 (136)
T PF11485_consen 108 SGFFISKWIEKFKKNLDEEIRLERIK 133 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHhHh
Confidence 34579999999999999999999953
No 4
>COG4420 Predicted membrane protein [Function unknown]
Probab=31.97 E-value=15 Score=34.11 Aligned_cols=33 Identities=27% Similarity=0.631 Sum_probs=26.1
Q ss_pred ccchhHHHHHhhhcCC-----Ceeeeeeheehhhhhhc
Q 021734 40 SRAPVIWSSFVSWLKP-----PYLYIIINAIIIIIAAS 72 (308)
Q Consensus 40 s~lP~~ws~~~swltP-----pyLfi~~N~IIi~I~as 72 (308)
+.+=.+|.++-.|+.| ||=||++|+.+-++++-
T Consensus 65 ~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~Aai 102 (191)
T COG4420 65 TLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAI 102 (191)
T ss_pred HHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHH
Confidence 3445678888888888 99999999998776653
No 5
>cd00795 NOS_oxygenase_euk Nitric oxide synthase (NOS) eukaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In mammals, there are three distinct NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) . Nitric oxide synthases are homodimers. In eukaryotes, each monomer has an N-terminal oxygenase domain, which binds to the substrate L-Arg, zinc, and to the cofactors heme and 5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic NOS's also have a C-terminal electron supplying reductase region, which is homologous to cytochrome P450 reductase and binds NADH, FAD and FMN.
Probab=22.17 E-value=1.2e+02 Score=31.32 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=19.4
Q ss_pred CChhHHhHHHHHHHHHHHHHHHH
Q 021734 269 LSQDELNRRVEAFIKKFNDEMRL 291 (308)
Q Consensus 269 ~~~~evd~rAE~FI~kF~~qlrL 291 (308)
-+.+++-..|++||..||.+++.
T Consensus 50 r~~e~l~~eA~~Fi~~~y~e~~~ 72 (412)
T cd00795 50 RPKEELLPQAKDFINQYYSSIKR 72 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcC
Confidence 45678999999999999987764
No 6
>PF14376 Haem_bd: Haem-binding domain
Probab=19.54 E-value=44 Score=28.70 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=21.6
Q ss_pred cCCCCcccHHHHHHHHhcCCCCCcccc
Q 021734 189 TKPRRHETLENTWKTITEGRAMPLTRH 215 (308)
Q Consensus 189 ~kp~~~eTLE~tWk~I~egr~~pltrh 215 (308)
.+++++..|+.+.+.|.+|. ||+...
T Consensus 87 ~~~~~~~~l~~i~~~I~~g~-MP~~~Y 112 (137)
T PF14376_consen 87 SKRKQEAKLAKIEEVIEDGE-MPPPSY 112 (137)
T ss_pred CcccCHHHHHHHHHHHHcCC-CChHHH
Confidence 45788899999999999987 787654
No 7
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=19.27 E-value=1.1e+02 Score=25.14 Aligned_cols=19 Identities=21% Similarity=0.622 Sum_probs=16.3
Q ss_pred hHHhHHHHHHHHHHHHHHH
Q 021734 272 DELNRRVEAFIKKFNDEMR 290 (308)
Q Consensus 272 ~evd~rAE~FI~kF~~qlr 290 (308)
.+...++|.||++|.++.+
T Consensus 30 ~~~r~~~d~~i~~y~~~~~ 48 (85)
T PF07240_consen 30 PQDRQRIDRFIRRYKEENN 48 (85)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4788999999999998864
No 8
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=15.65 E-value=2e+02 Score=27.64 Aligned_cols=23 Identities=9% Similarity=0.437 Sum_probs=17.7
Q ss_pred CCChhHHhHHHHHHHHHHHHHHH
Q 021734 268 SLSQDELNRRVEAFIKKFNDEMR 290 (308)
Q Consensus 268 ~~~~~evd~rAE~FI~kF~~qlr 290 (308)
..+++|||+..+.|.++|..+++
T Consensus 74 ~v~~~evd~~i~~i~~~~g~~f~ 96 (298)
T PRK04405 74 KVSTKKVDKQYNSYKKQYGSSFD 96 (298)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHH
Confidence 35688899999999988776543
No 9
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=15.29 E-value=2.2e+02 Score=26.93 Aligned_cols=40 Identities=15% Similarity=0.381 Sum_probs=25.2
Q ss_pred CCCChhHHhHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHhc
Q 021734 267 PSLSQDELNRRVEAFIKKFNDEMR--LQRQE--SLRQYQEMISR 306 (308)
Q Consensus 267 ~~~~~~evd~rAE~FI~kF~~qlr--LQRqe--S~~~y~eml~R 306 (308)
-..+++|||...+....+|.++++ |+++. ++..|++.+++
T Consensus 69 i~vsd~evd~~i~~i~~~~g~~f~~~L~~~G~~~~~~~r~~ir~ 112 (285)
T PRK03002 69 YKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKF 112 (285)
T ss_pred CCcCHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 356788888888887777655444 23332 46677666543
No 10
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=14.27 E-value=5.2e+02 Score=18.98 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=23.2
Q ss_pred HHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Q 021734 273 ELNRRVEAFI---KKFNDEMRLQRQESLRQYQEMISR 306 (308)
Q Consensus 273 evd~rAE~FI---~kF~~qlrLQRqeS~~~y~eml~R 306 (308)
+++...+.|- +.|+++++.++++.+...++++.+
T Consensus 6 ~F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~ 42 (77)
T PF03993_consen 6 RFRAACDAFFDRRKEFFEEQDAEREENLEKKEALIEE 42 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566664 456777788888888888777653
Done!