Query 021734
Match_columns 308
No_of_seqs 141 out of 255
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 08:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m3w_A H10H24; four-helix bund 52.0 17 0.00056 23.7 3.5 23 270-292 2-24 (32)
2 2ejx_A ST0812; arcaea, unknown 51.9 11 0.00037 32.3 3.4 22 274-295 115-136 (139)
3 1d0c_A Bovine endothelial nitr 27.7 1.1E+02 0.0039 30.4 6.7 25 267-291 80-104 (444)
4 3n5w_A Nitric oxide synthase; 23.8 33 0.0011 34.0 2.1 23 270-292 54-76 (422)
5 3e7m_A Nitric oxide synthase, 22.0 35 0.0012 33.9 1.8 23 269-291 63-85 (433)
6 2kt5_B ICP27; chaperone, mRNA 15.7 94 0.0032 21.4 2.3 25 166-191 6-32 (40)
7 2q2f_A Selenoprotein S; anti-p 15.2 2.2E+02 0.0075 22.6 4.7 16 271-286 57-72 (89)
8 1y66_A Engrailed homeodomain; 14.0 3.3E+02 0.011 19.2 4.8 16 272-287 6-21 (52)
9 2kkm_A Translation machinery-a 13.8 1.4E+02 0.0049 24.8 3.5 24 267-290 43-66 (144)
10 1v74_B Colicin D immunity prot 11.2 1.6E+02 0.0055 23.1 2.8 24 263-286 63-86 (87)
No 1
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=52.03 E-value=17 Score=23.73 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=19.9
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHH
Q 021734 270 SQDELNRRVEAFIKKFNDEMRLQ 292 (308)
Q Consensus 270 ~~~evd~rAE~FI~kF~~qlrLQ 292 (308)
+..||=+.-|+|.+||.+-|+|.
T Consensus 2 gggeiwklheeflkkfeellklh 24 (32)
T 1m3w_A 2 GGGEIWKLHEEFLKKFEELLKLH 24 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999998875
No 2
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=51.95 E-value=11 Score=32.25 Aligned_cols=22 Identities=14% Similarity=0.456 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 021734 274 LNRRVEAFIKKFNDEMRLQRQE 295 (308)
Q Consensus 274 vd~rAE~FI~kF~~qlrLQRqe 295 (308)
++++.+.|.++|.|.+||+|-.
T Consensus 115 i~k~i~~f~k~ldE~IRlERIK 136 (139)
T 2ejx_A 115 VSSNLDRLAENIDEIIRLERIK 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHhhhh
Confidence 8999999999999999999964
No 3
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold, oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP: d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A* 1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A* 1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A* 1nse_A* ...
Probab=27.71 E-value=1.1e+02 Score=30.43 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=20.8
Q ss_pred CCCChhHHhHHHHHHHHHHHHHHHH
Q 021734 267 PSLSQDELNRRVEAFIKKFNDEMRL 291 (308)
Q Consensus 267 ~~~~~~evd~rAE~FI~kF~~qlrL 291 (308)
.....++|...|++||+.||.+++.
T Consensus 80 ~~~~~~~l~~eA~~Fi~~~y~e~~~ 104 (444)
T 1d0c_A 80 GPPPAEQLLSQARDFINQYYSSIKR 104 (444)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccc
Confidence 3446678999999999999999855
No 4
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn oxidoreductase, oxidoreductase-oxidoreductase inhibitor COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} SCOP: d.174.1.1 PDB: 2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A* 3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A* 3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Probab=23.85 E-value=33 Score=33.96 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.3
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHH
Q 021734 270 SQDELNRRVEAFIKKFNDEMRLQ 292 (308)
Q Consensus 270 ~~~evd~rAE~FI~kF~~qlrLQ 292 (308)
+.++|...|++||..||.+++..
T Consensus 54 ~~e~ll~eA~~Fi~q~y~e~~~~ 76 (422)
T 3n5w_A 54 TKDQLFPLAKEFLDQYYSSIKRF 76 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHHHHHHhcccc
Confidence 66789999999999999998753
No 5
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin, oxido calmodulin-binding, FAD, FMN, iron, metal-binding, NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A* 3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A* 3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A* 1m8h_A* 1m8i_A* 1m9t_A* ...
Probab=22.03 E-value=35 Score=33.94 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=19.6
Q ss_pred CChhHHhHHHHHHHHHHHHHHHH
Q 021734 269 LSQDELNRRVEAFIKKFNDEMRL 291 (308)
Q Consensus 269 ~~~~evd~rAE~FI~kF~~qlrL 291 (308)
-..++|...|++||+.||.+++.
T Consensus 63 ~~~e~l~~eA~~Fi~q~y~e~~~ 85 (433)
T 3e7m_A 63 TPLEELLPHAIEFINQYYGSFKE 85 (433)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC
Confidence 45678999999999999987764
No 6
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=15.67 E-value=94 Score=21.36 Aligned_cols=25 Identities=48% Similarity=0.773 Sum_probs=16.9
Q ss_pred cccccCCcccccCCcc--ccccccccCC
Q 021734 166 VSARFGHRKPIKSSPE--DGKKLRVTKP 191 (308)
Q Consensus 166 vsaRfghrK~vk~spe--g~kaL~v~kp 191 (308)
|-+|.|+|++-. ++| ||++.|+-.|
T Consensus 6 VWsrLG~RR~~s-~~E~~~GkvAR~qpp 32 (40)
T 2kt5_B 6 VWSRLGARRPSC-SPERHGGKVARLQPP 32 (40)
T ss_dssp CCCCCSSCCCCC-CCCCCCCCSCCCCCC
T ss_pred HHHHhcccCcCC-CcCCCCCceeeecCC
Confidence 557999888754 444 6788776544
No 7
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=15.17 E-value=2.2e+02 Score=22.63 Aligned_cols=16 Identities=44% Similarity=0.611 Sum_probs=13.0
Q ss_pred hhHHhHHHHHHHHHHH
Q 021734 271 QDELNRRVEAFIKKFN 286 (308)
Q Consensus 271 ~~evd~rAE~FI~kF~ 286 (308)
++|+|++|+.|-.|-+
T Consensus 57 QEeldAqAe~~keKQk 72 (89)
T 2q2f_A 57 QEELNAQVEKHKEKLK 72 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4799999999987743
No 8
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=14.04 E-value=3.3e+02 Score=19.25 Aligned_cols=16 Identities=19% Similarity=0.796 Sum_probs=13.4
Q ss_pred hHHhHHHHHHHHHHHH
Q 021734 272 DELNRRVEAFIKKFND 287 (308)
Q Consensus 272 ~evd~rAE~FI~kF~~ 287 (308)
+||.|+-.+|.++..+
T Consensus 6 eeverklkefvrrhqe 21 (52)
T 1y66_A 6 EEVERKLKEFVRRHQE 21 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999998543
No 9
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=13.76 E-value=1.4e+02 Score=24.84 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=20.8
Q ss_pred CCCChhHHhHHHHHHHHHHHHHHH
Q 021734 267 PSLSQDELNRRVEAFIKKFNDEMR 290 (308)
Q Consensus 267 ~~~~~~evd~rAE~FI~kF~~qlr 290 (308)
..++.+|+-.-++.||.||.++|-
T Consensus 43 ~~~t~~e~~~lI~~yl~R~d~ELe 66 (144)
T 2kkm_A 43 PIFDHAHTREFIQSFIERDDTELD 66 (144)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcHHHH
Confidence 357899999999999999988753
No 10
>1v74_B Colicin D immunity protein; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: a.24.20.1 PDB: 1tfk_B* 1tfo_B
Probab=11.22 E-value=1.6e+02 Score=23.15 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.1
Q ss_pred cccCCCCChhHHhHHHHHHHHHHH
Q 021734 263 LRKEPSLSQDELNRRVEAFIKKFN 286 (308)
Q Consensus 263 ~r~e~~~~~~evd~rAE~FI~kF~ 286 (308)
.|++.+.+++++.++|.++++||+
T Consensus 63 ~r~~yElde~~Lr~ev~~~L~k~~ 86 (87)
T 1v74_B 63 DRANYEIDDNGLKVEVRSILEKFK 86 (87)
T ss_dssp TCCTTCBCHHHHHHHHHHHHHHTT
T ss_pred cccccccChHHHHHHHHHHHHHhc
Confidence 566788999999999999999975
Done!