Query 021735
Match_columns 308
No_of_seqs 152 out of 1179
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 08:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 8E-74 2.7E-78 556.0 36.8 302 4-307 1-314 (435)
2 1w63_M Adaptor-related protein 100.0 3.8E-74 1.3E-78 556.5 28.4 303 3-307 1-304 (423)
3 1i31_A Clathrin coat assembly 100.0 1.4E-45 4.9E-50 343.2 19.2 181 127-307 1-193 (314)
4 4en2_M AP-1 complex subunit MU 100.0 2E-40 6.9E-45 301.5 16.1 147 160-307 1-147 (266)
5 3l81_A AP-4 complex subunit MU 100.0 5.7E-40 1.9E-44 303.2 16.9 155 151-307 14-172 (301)
6 3ml6_A Chimeric complex betwee 100.0 1.3E-39 4.3E-44 310.1 19.8 191 112-307 60-264 (385)
7 1w63_Q Adapter-related protein 100.0 4.1E-34 1.4E-38 240.9 16.7 140 4-146 1-143 (158)
8 2vgl_S AP-2 complex subunit si 100.0 4.5E-33 1.5E-37 230.7 15.3 136 4-142 1-140 (142)
9 3tjz_C Coatomer subunit zeta-1 100.0 1.4E-31 4.8E-36 223.9 16.9 134 3-142 11-150 (153)
10 2nut_C Vesicle-trafficking pro 95.3 0.31 1.1E-05 41.2 12.9 98 3-100 1-102 (196)
11 4b93_A Vesicle-associated memb 93.4 1.1 3.9E-05 37.5 12.0 84 13-100 10-93 (189)
12 2vx8_A Nucleoporin-like protei 93.4 0.64 2.2E-05 38.5 10.1 49 52-100 87-135 (169)
13 3bw6_A Synaptobrevin homolog Y 93.3 1.4 4.9E-05 35.2 12.0 97 1-99 3-110 (144)
14 3cpt_A Mitogen-activated prote 92.8 2.2 7.4E-05 34.2 11.9 91 5-96 38-135 (143)
15 3cue_A Transport protein parti 92.8 1.9 6.7E-05 37.0 12.5 25 3-27 1-25 (219)
16 1nrj_A Signal recognition part 92.3 1.6 5.5E-05 34.9 10.4 73 4-76 1-93 (158)
17 3g9h_A Suppressor of yeast pro 91.7 7.7 0.00026 35.4 17.4 113 170-302 67-189 (328)
18 4afi_A AP-3 complex subunit de 91.6 2.7 9.2E-05 34.8 11.8 84 13-100 62-145 (173)
19 2fh5_A Signal recognition part 90.4 2.6 9E-05 35.3 10.5 94 3-99 9-104 (185)
20 2j3t_C Trafficking protein par 89.8 1.8 6.2E-05 34.7 8.8 92 3-98 1-109 (145)
21 3kyq_A YKT6, synaptobrevin hom 83.8 12 0.00043 31.4 11.2 93 5-99 4-107 (199)
22 2j3w_A Sedlin, trafficking pro 83.2 14 0.00048 29.2 10.7 94 5-100 6-114 (142)
23 3cue_C Transport protein parti 81.2 6.5 0.00022 32.0 8.1 92 3-98 1-115 (159)
24 2j3t_D Trafficking protein par 33.7 31 0.0011 29.5 3.5 20 5-24 3-22 (219)
25 2wl8_A Peroxisomal biogenesis 24.3 1.1E+02 0.0037 23.7 4.8 21 107-127 88-108 (126)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=8e-74 Score=556.00 Aligned_cols=302 Identities=40% Similarity=0.775 Sum_probs=261.9
Q ss_pred ceeEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHhccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHH
Q 021735 4 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASI 83 (308)
Q Consensus 4 MI~~i~Il~~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~Ly~v~v~~~~~n~l~~ 83 (308)
||+++||+|++|+++++|+|+++.++...+.|.+.+....+. ..+|++++++++|+|+++++|||+|+++.++||+++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~--~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 78 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ--VRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV 78 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSSC--CCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccccC--CCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 899999999999999999999988888889999998865422 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHhhhHHHHHHHHHHHHcCCeeeecChHHHHHHhccccccccc-----cCCCCCcccCC
Q 021735 84 LLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEV-----TQRPPMAVTNA 158 (308)
Q Consensus 84 ~~~L~~~~~~l~~y~~~l~e~~I~~n~~~v~~lLDEiid~G~p~~t~~~~L~~~i~~~~~~~~~-----~~~~~~~~~~~ 158 (308)
++|||+++++|++||++++|++|++||++||++||||+|+|+||+|+++.|++++.++++..+. .+.+|++++++
T Consensus 79 le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (435)
T 2vgl_M 79 FEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQ 158 (435)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999987643 12345566778
Q ss_pred CcCcccCCccccceEEEEEEEeEeEEEccCCcEEEEEEEEEEEEEEEeCCCCeEEEeeccchhhhhccCC-----C--CC
Q 021735 159 VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRS-----T--KG 231 (308)
Q Consensus 159 ~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~-----~--~~ 231 (308)
+|||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..++. + ..
T Consensus 159 i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~ 238 (435)
T 2vgl_M 159 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 238 (435)
T ss_dssp CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC----------------
T ss_pred cccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998766543211 0 12
Q ss_pred ceeecccccccccccccCccCCCeEEEeCCCCceEEEEEEecCCCCCcEEEEEEEEEcCceEEEEEEEEeeccCCC
Q 021735 232 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKER 307 (308)
Q Consensus 232 ~~~~l~~~~fH~cV~~~~f~~~~~i~F~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~~~i~l~~~~~~~ 307 (308)
.++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..|||.+.||+++.+++++|+.++++++|+++
T Consensus 239 ~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~ 314 (435)
T 2vgl_M 239 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPS 314 (435)
T ss_dssp -CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTT
T ss_pred CceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCC
Confidence 4678999999999999999999999999999999999999998889999999999987778999999999999865
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=3.8e-74 Score=556.46 Aligned_cols=303 Identities=60% Similarity=1.071 Sum_probs=263.8
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHhccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHH
Q 021735 3 GAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAAS 82 (308)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~Ly~v~v~~~~~n~l~ 82 (308)
|||+|+||+|++|+++++|+|+++.++..++.|.+++..+.+. ...+|++++++++|+|+++++|||+|+++.++||++
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~-~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEE-GMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHT-SCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 5999999999999999999999988888889999998865321 136899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHhhhHHHHHHHHHHHHcCCeeeecChHHHHHHhccccccccccC-CCCCcccCCCcC
Q 021735 83 ILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQ-RPPMAVTNAVSW 161 (308)
Q Consensus 83 ~~~~L~~~~~~l~~y~~~l~e~~I~~n~~~v~~lLDEiid~G~p~~t~~~~L~~~i~~~~~~~~~~~-~~~~~~~~~~~w 161 (308)
+++|||+++++|++||++++|++|++||++||++||||+|+|+||+|++++|+++|.++++..+.++ .+|++.++++||
T Consensus 80 ~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~w 159 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSW 159 (423)
T ss_dssp HHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC-----------CCS
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccccccCCcccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999988632222 344556678999
Q ss_pred cccCCccccceEEEEEEEeEeEEEccCCcEEEEEEEEEEEEEEEeCCCCeEEEeeccchhhhhccCCCCCceeecccccc
Q 021735 162 RSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKF 241 (308)
Q Consensus 162 R~~~~~~~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~l~~~~f 241 (308)
|+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..++ +...++.++||+|
T Consensus 160 r~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~-~~~~~v~l~d~~f 238 (423)
T 1w63_M 160 RSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDVKF 238 (423)
T ss_dssp SCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC--------------CEEEEEE
T ss_pred cccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc-cccCceEcccccc
Confidence 999999999999999999999999999999999999999999999999999999999876654332 2345678999999
Q ss_pred cccccccCccCCCeEEEeCCCCceEEEEEEecCCCCCcEEEEEEEEEcCceEEEEEEEEeeccCCC
Q 021735 242 HQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKER 307 (308)
Q Consensus 242 H~cV~~~~f~~~~~i~F~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~~~i~l~~~~~~~ 307 (308)
||||++++|+++|+|+|+||||+|+||+||++.+..|||.+.||++..+++++|+.++++++|+++
T Consensus 239 HpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~ 304 (423)
T 1w63_M 239 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRR 304 (423)
T ss_dssp CTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTT
T ss_pred cccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCc
Confidence 999999999999999999999999999999988889999999999987778999999999999874
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=1.4e-45 Score=343.22 Aligned_cols=181 Identities=42% Similarity=0.818 Sum_probs=129.3
Q ss_pred eecChHHHHHHhccccccccc-----cCCCCCcccCCCcCcccCCccccceEEEEEEEeEeEEEccCCcEEEEEEEEEEE
Q 021735 127 QFTEAKILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALK 201 (308)
Q Consensus 127 ~~t~~~~L~~~i~~~~~~~~~-----~~~~~~~~~~~~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~ 201 (308)
|+||++.||++|..+++..+. ...+|+++++++|||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 689999999999999876532 224566778899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEeeccchhhhhccCC-------CCCceeecccccccccccccCccCCCeEEEeCCCCceEEEEEEecC
Q 021735 202 MRTYLSGMPECKLGLNDRVLLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLST 274 (308)
Q Consensus 202 ~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~~~l~~~~fH~cV~~~~f~~~~~i~F~PPdg~f~Lm~Y~~~~ 274 (308)
|+|+|+|||+|+|+||++..++.+++. ....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~ 160 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK 160 (314)
T ss_dssp EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS
T ss_pred EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC
Confidence 999999999999999998766543321 1135678999999999999999999999999999999999999998
Q ss_pred CCCCcEEEEEEEEEcCceEEEEEEEEeeccCCC
Q 021735 275 QVKPLIWVEAQIERHSRSRIEIMVKARSQFKER 307 (308)
Q Consensus 275 ~~~~P~~v~~~~~~~~~~~~~~~i~l~~~~~~~ 307 (308)
+..+||.+.|++++.+++++||.++++++|+++
T Consensus 161 ~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~ 193 (314)
T 1i31_A 161 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPS 193 (314)
T ss_dssp SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTT
T ss_pred CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCc
Confidence 889999999999987778999999999999874
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=2e-40 Score=301.54 Aligned_cols=147 Identities=70% Similarity=1.239 Sum_probs=137.0
Q ss_pred cCcccCCccccceEEEEEEEeEeEEEccCCcEEEEEEEEEEEEEEEeCCCCeEEEeeccchhhhhccCCCCCceeecccc
Q 021735 160 SWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDI 239 (308)
Q Consensus 160 ~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~l~~~ 239 (308)
+||+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..++ +...++.++||
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~-~~~~~~~l~d~ 79 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDV 79 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTC-TTSCCBCCEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccc-cccCccCcccc
Confidence 69999999999999999999999999999999999999999999999999999999999987765543 23467789999
Q ss_pred cccccccccCccCCCeEEEeCCCCceEEEEEEecCCCCCcEEEEEEEEEcCceEEEEEEEEeeccCCC
Q 021735 240 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKER 307 (308)
Q Consensus 240 ~fH~cV~~~~f~~~~~i~F~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~~~i~l~~~~~~~ 307 (308)
+|||||++++|+++|+|+|+||||+|+||+||++.+..|||.+.|+++..++++++++++++++|+++
T Consensus 80 ~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~ 147 (266)
T 4en2_M 80 KFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRR 147 (266)
T ss_dssp EECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTT
T ss_pred ccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCC
Confidence 99999999999999999999999999999999998889999999999988778999999999999864
No 5
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=5.7e-40 Score=303.24 Aligned_cols=155 Identities=30% Similarity=0.590 Sum_probs=126.5
Q ss_pred CCCcccCCC-cCcccCCccccceEEEEEEEeEeEEEccCCcEEEEEEEEEEEEEEEeCCCCeEEEeeccchhhhhccCCC
Q 021735 151 PPMAVTNAV-SWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRST 229 (308)
Q Consensus 151 ~~~~~~~~~-~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~ 229 (308)
++.++++++ +||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..+++.+..+
T Consensus 14 ~~~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~ 91 (301)
T 3l81_A 14 PSSAASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRG 91 (301)
T ss_dssp ---------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTC
T ss_pred CchhhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccccccc
Confidence 344556665 99985 899999999999999999999999999999999999999999999999999998776655444
Q ss_pred CCceeecccccccccccccCccCCCeEEEeCCCCceEEEEEEecCCC--CCcEEEEEEEEEcCc-eEEEEEEEEeeccCC
Q 021735 230 KGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQV--KPLIWVEAQIERHSR-SRIEIMVKARSQFKE 306 (308)
Q Consensus 230 ~~~~~~l~~~~fH~cV~~~~f~~~~~i~F~PPdg~f~Lm~Y~~~~~~--~~P~~v~~~~~~~~~-~~~~~~i~l~~~~~~ 306 (308)
...++.++||+|||||++++|+++|+|+|+||||+|+||+||++.+. .+||.++|++++.++ +++|+.++++++|++
T Consensus 92 ~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~ 171 (301)
T 3l81_A 92 YGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLS 171 (301)
T ss_dssp CCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCT
T ss_pred ccCceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCC
Confidence 45678899999999999999999999999999999999999998754 799999999999755 799999999999987
Q ss_pred C
Q 021735 307 R 307 (308)
Q Consensus 307 ~ 307 (308)
+
T Consensus 172 ~ 172 (301)
T 3l81_A 172 K 172 (301)
T ss_dssp T
T ss_pred C
Confidence 5
No 6
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=1.3e-39 Score=310.11 Aligned_cols=191 Identities=37% Similarity=0.681 Sum_probs=145.8
Q ss_pred HHHHHHHHHHcCCeeeecChHHHHHHhcccccccccc---CCCCCcccCCC-cC---cccCCccccceEEEEEEEeEeEE
Q 021735 112 VVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVT---QRPPMAVTNAV-SW---RSEGIRYKKNEVFLDVVESVNIL 184 (308)
Q Consensus 112 ~v~~lLDEiid~G~p~~t~~~~L~~~i~~~~~~~~~~---~~~~~~~~~~~-~w---R~~~~~~~~nei~vdv~E~i~~~ 184 (308)
....+-..+++.|+++-+.-.. .+.. ... -.+ ...|...++++ || |+.|++|++|||||||+|+|+++
T Consensus 60 eA~~~g~~Ll~~G~i~hv~~~~--~F~d--~~~-y~f~~~~~~~~~~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~ 134 (385)
T 3ml6_A 60 EARKYASGLLKAGLIRHTVNKI--TFSE--QCY-YVFGDLSGGPRPYSPQPPPYHELEFGGSGGSRNELFLDVLESVNLL 134 (385)
T ss_dssp HHHHHHHHHHHHSSEEESSSCS--SCCS--SSE-EEECCCCC------CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEcCCcc--eecC--cce-EEeeccccccCccCCCCCCchhccccCCccccceEEEEEEEEEEEE
Confidence 3445667778889988765221 0100 000 000 12222334444 99 78999999999999999999999
Q ss_pred EccCCcEEEEEEEEEEEEEEEeCCCCeEEEeeccchhhhhccCC-------CCCceeecccccccccccccCccCCCeEE
Q 021735 185 VNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTIS 257 (308)
Q Consensus 185 ~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~~~l~~~~fH~cV~~~~f~~~~~i~ 257 (308)
++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..++. +...++.|+||+|||||++++|+++|+|+
T Consensus 135 ~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~Is 214 (385)
T 3ml6_A 135 MSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSIS 214 (385)
T ss_dssp ECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------------CCCCEEEECTTBCCCCSSSCSEEE
T ss_pred ECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccccccccCceEccccccccccChhHccccceEE
Confidence 99999999999999999999999999999999998766543321 12356789999999999999999999999
Q ss_pred EeCCCCceEEEEEEecCCCCCcEEEEEEEEEcCceEEEEEEEEeeccCCC
Q 021735 258 FIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKER 307 (308)
Q Consensus 258 F~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~~~i~l~~~~~~~ 307 (308)
|+||||+|+||+||++.+..+||++.|++++.++++++++++++++|+++
T Consensus 215 FiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~ 264 (385)
T 3ml6_A 215 FIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPS 264 (385)
T ss_dssp ECCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEECSCTT
T ss_pred EeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeecCCCc
Confidence 99999999999999988889999999999998889999999999999875
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=4.1e-34 Score=240.95 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=129.1
Q ss_pred ceeEEEEEcCCCCEEEEEccCCCCCh---hHHHHHHHHhccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCH
Q 021735 4 AASALFLLDIKGRVLIWRDYRGDVSA---IQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNA 80 (308)
Q Consensus 4 MI~~i~Il~~~G~~ll~r~y~~~~~~---~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~Ly~v~v~~~~~n~ 80 (308)
||+++||+|++|+++++|||+++.++ ...+.|++.+.++++ ..+|++++++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne 77 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKP---KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE 77 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCS---SSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCC---CCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 89999999999999999999988765 456688887766532 368999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHhhhHHHHHHHHHHHHcCCeeeecChHHHHHHhcccccccc
Q 021735 81 ASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRME 146 (308)
Q Consensus 81 l~~~~~L~~~~~~l~~y~~~l~e~~I~~n~~~v~~lLDEiid~G~p~~t~~~~L~~~i~~~~~~~~ 146 (308)
++++++||+++++|++|||+++|++|++||+.||++||||+|+|+||+|+++.|+++|.+++...+
T Consensus 78 l~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~~ 143 (158)
T 1w63_Q 78 LITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQE 143 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999998876543
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=4.5e-33 Score=230.69 Aligned_cols=136 Identities=18% Similarity=0.231 Sum_probs=123.0
Q ss_pred ceeEEEEEcCCCCEEEEEccCCCC---ChhHHHHHHHHhccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCH
Q 021735 4 AASALFLLDIKGRVLIWRDYRGDV---SAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNA 80 (308)
Q Consensus 4 MI~~i~Il~~~G~~ll~r~y~~~~---~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~Ly~v~v~~~~~n~ 80 (308)
||+|++|+|++|+++++|||++.. .+...+.|.+.+..+++ ..+|+++.++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~---~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~ 77 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDA---KHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN 77 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCT---TSCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCC---CCCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence 899999999999999999999532 34577889999885432 368999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHhhhHHHHHHHHHHHHcCCeeeecC-hHHHHHHhcccc
Q 021735 81 ASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTE-AKILSEFIKTDA 142 (308)
Q Consensus 81 l~~~~~L~~~~~~l~~y~~~l~e~~I~~n~~~v~~lLDEiid~G~p~~t~-~~~L~~~i~~~~ 142 (308)
++++++||+++++|++|||+++|++|++||+.+|++||||+|+|+||+|+ .+.|+.++.++.
T Consensus 78 l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~ 140 (142)
T 2vgl_S 78 LAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999995 677888876653
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.98 E-value=1.4e-31 Score=223.86 Aligned_cols=134 Identities=18% Similarity=0.286 Sum_probs=116.5
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCC-C---hhHHH-HHHHHhccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCC
Q 021735 3 GAASALFLLDIKGRVLIWRDYRGDV-S---AIQAE-RFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQN 77 (308)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~r~y~~~~-~---~~~~~-~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~Ly~v~v~~~~ 77 (308)
.||++++|+|++|+++++|||+++. + +...+ .+++.+. + ..+|++.++++.++|+++++|||+++++.+
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r-----~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~ 84 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-R-----TDSEIALLEGLTVVYKSSIDLYFYVIGSSY 84 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-S-----CCCCEEEETTEEEEEEECSSCEEEEEEETT
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-----CCCCEEEECCEEEEEEEECCEEEEEEEcCC
Confidence 4999999999999999999999863 3 22233 3555542 2 137999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh-cchhHHHHhhhHHHHHHHHHHHHcCCeeeecChHHHHHHhcccc
Q 021735 78 CNAASILLFLHRVADVFKHYF-EELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDA 142 (308)
Q Consensus 78 ~n~l~~~~~L~~~~~~l~~y~-~~l~e~~I~~n~~~v~~lLDEiid~G~p~~t~~~~L~~~i~~~~ 142 (308)
+||++++++||+++++|++|| ++++|++|++||+.||++||||+|+|+||+|+++.+.+.+...+
T Consensus 85 eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 999999999999999999999 88999999999999999999999999999999999999987654
No 10
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.34 E-value=0.31 Score=41.20 Aligned_cols=98 Identities=9% Similarity=0.110 Sum_probs=63.4
Q ss_pred cceeEEEEEcC-CCCEEEEEccCCCC---ChhHHHHHHHHhccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCC
Q 021735 3 GAASALFLLDI-KGRVLIWRDYRGDV---SAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNC 78 (308)
Q Consensus 3 ~MI~~i~Il~~-~G~~ll~r~y~~~~---~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~Ly~v~v~~~~~ 78 (308)
+||....|.-. +|.+|.+..-.+.. .+.....+.+.+..+-..+....--+..+++.|.|...+++.++|+++.+.
T Consensus 1 ~Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 1 SMVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp -CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred CceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 57777777644 57777664322111 122344444555443211011112567789999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcc
Q 021735 79 NAASILLFLHRVADVFKHYFEE 100 (308)
Q Consensus 79 n~l~~~~~L~~~~~~l~~y~~~ 100 (308)
+.-.++.||..+.+-+..-++.
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999877765553
No 11
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=93.41 E-value=1.1 Score=37.54 Aligned_cols=84 Identities=8% Similarity=0.176 Sum_probs=58.6
Q ss_pred CCCCEEEEEccCCCCChhHHHHHHHHhccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHHHHHHHHHHH
Q 021735 13 IKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVAD 92 (308)
Q Consensus 13 ~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~Ly~v~v~~~~~n~l~~~~~L~~~~~ 92 (308)
.+|.++++.+-.. . .-...+.+.+..+-... ...-.+..+++.|.|...+++.++|+++.+-+--.++.||+.+.+
T Consensus 10 Arg~~iLae~t~~--~-gnf~~ia~~iL~kip~~-~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~ 85 (189)
T 4b93_A 10 ARGTTILAKHAWC--G-GNFLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 85 (189)
T ss_dssp EETTEEEEEEESS--E-ECHHHHHHHHHTTCCSS-SEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EeCCEEEEeCCCC--C-CCHHHHHHHHHHhCCCC-CCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHH
Confidence 3688888865222 1 12233444444332111 111256789999999999999999999999999999999999998
Q ss_pred HHHHHhcc
Q 021735 93 VFKHYFEE 100 (308)
Q Consensus 93 ~l~~y~~~ 100 (308)
-+..-++.
T Consensus 86 eF~~~~~~ 93 (189)
T 4b93_A 86 RFQTTYGS 93 (189)
T ss_dssp HHHHHHGG
T ss_pred HHHhhccc
Confidence 88777664
No 12
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=93.37 E-value=0.64 Score=38.51 Aligned_cols=49 Identities=10% Similarity=0.289 Sum_probs=44.1
Q ss_pred EEEeCCEEEEEEEeCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q 021735 52 VVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEE 100 (308)
Q Consensus 52 ii~~~~~~~v~~~~~~Ly~v~v~~~~~n~l~~~~~L~~~~~~l~~y~~~ 100 (308)
-++.++..|.|...++|.++|+++..-.--.++.||+++.+-+..-++.
T Consensus 87 s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y~~ 135 (169)
T 2vx8_A 87 TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS 135 (169)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHHHHHhhh
Confidence 5678999999999999999999999999999999999999988877764
No 13
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=93.35 E-value=1.4 Score=35.24 Aligned_cols=97 Identities=8% Similarity=0.044 Sum_probs=63.0
Q ss_pred CccceeEEEEEcCCC--CEEEEEccCCC----CChhHHHHH----HHHhccccCCCCCCCCEEEeCCEEEEEE-EeCCEE
Q 021735 1 MAGAASALFLLDIKG--RVLIWRDYRGD----VSAIQAERF----FTKFIEKEGDPQSQNPVVFDNGVTYMFI-QHNNVY 69 (308)
Q Consensus 1 ~~~MI~~i~Il~~~G--~~ll~r~y~~~----~~~~~~~~f----~~~i~~~~~~~~~~~pii~~~~~~~v~~-~~~~Ly 69 (308)
|++=|-++.|+-..+ -++++..+.-. ..|+....| -+.+..+...+ .---++.+++.+.|. +.+++.
T Consensus 3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~--~R~sv~~~~y~fH~~~~~~gl~ 80 (144)
T 3bw6_A 3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG--QRQSIEEGNYIGHVYARSEGIC 80 (144)
T ss_dssp CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT--EEEEEEETTEEEEEEECTTSEE
T ss_pred cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC--ceEEEEeCCEEEEEEEecCCEE
Confidence 677788887775432 34555554321 124334433 34444332111 112567788888887 778999
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Q 021735 70 LMAASRQNCNAASILLFLHRVADVFKHYFE 99 (308)
Q Consensus 70 ~v~v~~~~~n~l~~~~~L~~~~~~l~~y~~ 99 (308)
++|+++.+-+--.++.||+.+.+-+..-++
T Consensus 81 ~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 81 GVLITDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999988877666555
No 14
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=92.81 E-value=2.2 Score=34.21 Aligned_cols=91 Identities=11% Similarity=0.062 Sum_probs=63.6
Q ss_pred eeEEEEEcCCCCEEEEEccCCCCCh----hHHHHHHHHhccccC--CCCCCCC-EEEeCCEEEEEEEeCCEEEEEEecCC
Q 021735 5 ASALFLLDIKGRVLIWRDYRGDVSA----IQAERFFTKFIEKEG--DPQSQNP-VVFDNGVTYMFIQHNNVYLMAASRQN 77 (308)
Q Consensus 5 I~~i~Il~~~G~~ll~r~y~~~~~~----~~~~~f~~~i~~~~~--~~~~~~p-ii~~~~~~~v~~~~~~Ly~v~v~~~~ 77 (308)
+.+|+|.|++|-+++.-...+.... +.+..|-...-+.++ -+ .... +-.++++.+++.....+++-.+++.+
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglG-knksII~~Y~~yqvVq~n~~Plvit~Ias~~ 116 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLS-KNKSIICYYNTYQVVQFNRLPLVVSFIASSS 116 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCC-CEEEEEEECSSEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCC-CCceEEEEecCeEEEEEecCCEEEEEEecCC
Confidence 5799999999999998776553321 344455444433211 11 2234 44678889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 021735 78 CNAASILLFLHRVADVFKH 96 (308)
Q Consensus 78 ~n~l~~~~~L~~~~~~l~~ 96 (308)
.|.-.++++=+.+..+|++
T Consensus 117 aNtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 117 ANTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCchhHhhhHHHHHHHHHH
Confidence 9988888876666666655
No 15
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=92.80 E-value=1.9 Score=37.03 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCC
Q 021735 3 GAASALFLLDIKGRVLIWRDYRGDV 27 (308)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~r~y~~~~ 27 (308)
+||.+++|+|+.|.++++|.|..+.
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~ 25 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDE 25 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCC
T ss_pred CeeEEEEEEeCCCCEEeehhhccCc
Confidence 5799999999999999999997544
No 16
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=92.31 E-value=1.6 Score=34.92 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=47.5
Q ss_pred ceeEEEEEcCCCCEEEEEcc-CCCCChhHHHHHHHHhccccCCCC----C------CCCEEEe-------CCEEEEEE--
Q 021735 4 AASALFLLDIKGRVLIWRDY-RGDVSAIQAERFFTKFIEKEGDPQ----S------QNPVVFD-------NGVTYMFI-- 63 (308)
Q Consensus 4 MI~~i~Il~~~G~~ll~r~y-~~~~~~~~~~~f~~~i~~~~~~~~----~------~~pii~~-------~~~~~v~~-- 63 (308)
||+++.|+..+|+++++..= ........+.+|..++++.+.... . --+++.+ ++..+.|.
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 99999999999999999542 222333567799999986542110 0 2357776 66666653
Q ss_pred EeCCEEEEEEecC
Q 021735 64 QHNNVYLMAASRQ 76 (308)
Q Consensus 64 ~~~~Ly~v~v~~~ 76 (308)
+.-.||||++--.
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 4457999988743
No 17
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=91.70 E-value=7.7 Score=35.37 Aligned_cols=113 Identities=13% Similarity=0.217 Sum_probs=67.0
Q ss_pred cceEEEEEEEeEeEEEccCCcEEEEEEEEEEEEEEEeCC-------CCeEEEeeccchhhhhccCCCCCceeeccccccc
Q 021735 170 KNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSG-------MPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFH 242 (308)
Q Consensus 170 ~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG-------~P~~~l~ln~~~~~~~~~~~~~~~~~~l~~~~fH 242 (308)
.-++-..|.|.|+|.+.. |.+.++.|.|+|.+. |..| .+.+.++|++-..++.-.+ +-+|-
T Consensus 67 ~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEiaLs-y~~~~~s~~p~p~~l~fRL~N~~~Lekv~p----------N~~fv 134 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFKD-GMLQNSQLIGEIALN-YLPNSVMNSPLPIGINLRINNGAKFEKVIL----------NQAFI 134 (328)
T ss_dssp CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEEEE-EECCSSSCCCCCSEEEEEEETGGGEEEEEE----------CTTTE
T ss_pred CCceeEEEEEEEEEEEEC-CcEEEEEEEEEEEEe-cCCCccccCCCCccEEEEecCcchhheeeC----------CHHHh
Confidence 457888999999999975 789999999997765 4444 2457888876543332111 11111
Q ss_pred ccccccCccCCCeEEEeCC---CCceEEEEEEecCCCCCcEEEEEEEEEcCceEEEEEEEEee
Q 021735 243 QCVRLARFENDRTISFIPP---DGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARS 302 (308)
Q Consensus 243 ~cV~~~~f~~~~~i~F~PP---dg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~~~i~l~~ 302 (308)
.++.-+ .-.|-++ ...-.+++|+++. ...|+.+.+.-+-. ..+.++.|.++.
T Consensus 135 ~~~~~~------eF~vn~~~L~sktv~~lKYqVs~-~~~PL~l~p~WK~E-~~qtsliI~Yk~ 189 (328)
T 3g9h_A 135 ERVAPE------EFKVNPSFIDSRTLGAIKYSIKE-PIAPIVIHPVWRFE-SHQASVVLTVKM 189 (328)
T ss_dssp EEEETT------EEEECTTTTBTCEEEEEEEEEES-CCCSEEEEEEEEEC-SSEEEEEEEEEE
T ss_pred ccCCCC------CEEEchHHhcccceeeEEEEECC-CCCCeEEEeeeecC-CCeeEEEEEEEE
Confidence 122111 1111111 1226789999975 78888887765543 334555554443
No 18
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=91.62 E-value=2.7 Score=34.81 Aligned_cols=84 Identities=8% Similarity=0.175 Sum_probs=59.4
Q ss_pred CCCCEEEEEccCCCCChhHHHHHHHHhccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHHHHHHHHHHH
Q 021735 13 IKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVAD 92 (308)
Q Consensus 13 ~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~Ly~v~v~~~~~n~l~~~~~L~~~~~ 92 (308)
.+|.++|+.+-... ...+.+.+.+..+-... ...-.++.+++.|.|...+++.++|+++.+..--.++.||+++.+
T Consensus 62 Arg~tiLAE~t~~~---gnf~~va~~iL~kip~~-~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~ 137 (173)
T 4afi_A 62 ARGTTILAKHAWCG---GNFLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 137 (173)
T ss_dssp EETTEEEEEEESSC---CCHHHHHHHHHTTSCSS-SEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred ECCCEEEEEccCCC---CCHHHHHHHHHHhCCCC-CCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHH
Confidence 35778777543322 12235555555432111 111266789999999999999999999999999999999999998
Q ss_pred HHHHHhcc
Q 021735 93 VFKHYFEE 100 (308)
Q Consensus 93 ~l~~y~~~ 100 (308)
-+..-++.
T Consensus 138 eF~~~yg~ 145 (173)
T 4afi_A 138 RFQTTYGS 145 (173)
T ss_dssp HHHHHHGG
T ss_pred HHHHHhch
Confidence 88877764
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=90.41 E-value=2.6 Score=35.30 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=63.1
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHhccccCCCCCCCCEEEeCCEEEEEEEeCC--EEEEEEecCCCCH
Q 021735 3 GAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNN--VYLMAASRQNCNA 80 (308)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~--Ly~v~v~~~~~n~ 80 (308)
+|++.+.|++..|=+|-+..-.+......+.++.+.++-.. +. ..+.+..+++..-|...|+ |.||++-..--+.
T Consensus 9 ~~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEE--R~-~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L 85 (185)
T 2fh5_A 9 SMVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQE--RG-GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTL 85 (185)
T ss_dssp CSCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGH
T ss_pred cceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcc--cc-CCCceeEcCeEEEEEEeccCCEEEEEEEcccccc
Confidence 79999999999999888732222122346778888877532 11 2356778998888888875 7899998775566
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 021735 81 ASILLFLHRVADVFKHYFE 99 (308)
Q Consensus 81 l~~~~~L~~~~~~l~~y~~ 99 (308)
..+=+||..+...+.+-|+
T Consensus 86 ~YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 86 TYVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6677777777776666664
No 20
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=89.80 E-value=1.8 Score=34.74 Aligned_cols=92 Identities=12% Similarity=0.189 Sum_probs=54.7
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCC----C-hh----------HHHHHHHHhccccCCCCCCCCEEEeCCE-EEEEEEeC
Q 021735 3 GAASALFLLDIKGRVLIWRDYRGDV----S-AI----------QAERFFTKFIEKEGDPQSQNPVVFDNGV-TYMFIQHN 66 (308)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~r~y~~~~----~-~~----------~~~~f~~~i~~~~~~~~~~~pii~~~~~-~~v~~~~~ 66 (308)
+|+.+++|+|++|.+|+++.|.... + .. .+..+.+++.- . .++..--.+..+++ ..+|..-.
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp-~-~~~~~~~~~~t~~ykl~~~~T~T 78 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSP-L-DMKDGFLSFQTSRYKLHYYETPT 78 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCS-S-CCSSCEEEEECSSCEEEEEECTT
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCC-C-CCCCceEEEecCCEEEEEEEcCC
Confidence 5789999999999999999996422 1 11 11223333321 1 11111124456665 45556667
Q ss_pred CEEEEEEecCCCCHHHHHHHHHHHH-HHHHHHh
Q 021735 67 NVYLMAASRQNCNAASILLFLHRVA-DVFKHYF 98 (308)
Q Consensus 67 ~Ly~v~v~~~~~n~l~~~~~L~~~~-~~l~~y~ 98 (308)
++-|+.+++..++. +=++|+++. ++.-+|.
T Consensus 79 giKFvl~td~~~~~--i~~~l~~iy~~lYv~~v 109 (145)
T 2j3t_C 79 GIKVVMNTDLGVGP--IRDVLHHIYSALYVEFV 109 (145)
T ss_dssp SCEEEEEECTTCCC--CHHHHHHHHHTTHHHHT
T ss_pred CCEEEEEecCCcch--HHHHHHHHHHHHHHHHH
Confidence 89999999876553 335667766 5655543
No 21
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=83.77 E-value=12 Score=31.40 Aligned_cols=93 Identities=11% Similarity=0.188 Sum_probs=60.7
Q ss_pred eeEEEEEcCCCC-E-EEEEccC-CC---CChhHHH---HHHH-HhccccCCCCCCCCEEEeCCEEEE-EEEeCCEEEEEE
Q 021735 5 ASALFLLDIKGR-V-LIWRDYR-GD---VSAIQAE---RFFT-KFIEKEGDPQSQNPVVFDNGVTYM-FIQHNNVYLMAA 73 (308)
Q Consensus 5 I~~i~Il~~~G~-~-ll~r~y~-~~---~~~~~~~---~f~~-~i~~~~~~~~~~~pii~~~~~~~v-~~~~~~Ly~v~v 73 (308)
|-++.|+-..|+ + ++...|. +. ..|.... .|.. .+..+... ...--+..+++.|. |...+++.++|+
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 567777765554 2 3444443 11 2244443 3333 33433211 11125667888877 888899999999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHhc
Q 021735 74 SRQNCNAASILLFLHRVADVFKHYFE 99 (308)
Q Consensus 74 ~~~~~n~l~~~~~L~~~~~~l~~y~~ 99 (308)
++.+-+--.++.||+.+.+-+..-++
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999888877776
No 22
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=83.19 E-value=14 Score=29.20 Aligned_cols=94 Identities=9% Similarity=0.040 Sum_probs=53.2
Q ss_pred eeEEEEEcCCCCEEEEEccCCCCCh---hHH-HHH----HHHh--c-cccCCCCCCCCEEE---eCCE-EEEEEEeCCEE
Q 021735 5 ASALFLLDIKGRVLIWRDYRGDVSA---IQA-ERF----FTKF--I-EKEGDPQSQNPVVF---DNGV-TYMFIQHNNVY 69 (308)
Q Consensus 5 I~~i~Il~~~G~~ll~r~y~~~~~~---~~~-~~f----~~~i--~-~~~~~~~~~~pii~---~~~~-~~v~~~~~~Ly 69 (308)
|.+++|+|++|.+|+.+.|...... ... ..+ ...+ . +.... +...-... .+++ .+.|..-.++-
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~-~~~~~l~~~~~~~~y~v~~~~T~tg~K 84 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWL-SNNMYLKTVDKFNEWFVSAFVTAGHMR 84 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGG-CSCSEEEEEEEETTEEEEEEECTTCCE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCC-CCcceeEeeecccceEEEEEEcCCCcE
Confidence 7899999999999999999754221 011 011 1111 0 00000 01112222 3343 45566667899
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q 021735 70 LMAASRQNCNAASILLFLHRVADVFKHYFEE 100 (308)
Q Consensus 70 ~v~v~~~~~n~l~~~~~L~~~~~~l~~y~~~ 100 (308)
|+.+++.. +.-.+=++++++.++.-+|.-+
T Consensus 85 fvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N 114 (142)
T 2j3w_A 85 FIMLHDVR-QEDGIKNFFTDVYDLYIKFAMN 114 (142)
T ss_dssp EEEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence 99999763 3445667777777766666543
No 23
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=81.18 E-value=6.5 Score=31.97 Aligned_cols=92 Identities=7% Similarity=0.125 Sum_probs=50.9
Q ss_pred cceeEEEEEcCCCCEEEEEccCCC-------CC---h-h----------HHHHHHHHhccccCCCCCCCCEEEeCCE-EE
Q 021735 3 GAASALFLLDIKGRVLIWRDYRGD-------VS---A-I----------QAERFFTKFIEKEGDPQSQNPVVFDNGV-TY 60 (308)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~r~y~~~-------~~---~-~----------~~~~f~~~i~~~~~~~~~~~pii~~~~~-~~ 60 (308)
|||.+++|+|++|.+|++|.|... .+ . . .+..|.+++.. .. ....--.+..+.+ .+
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~-~~-~~~~f~~~~T~~ykl~ 78 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSK-GS-VKNDIRSISTGKYRVH 78 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCC-SS-SCCCEEEEECSSCBEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCC-CC-CCCCeEEEeeCCEEEE
Confidence 578999999999999999999531 10 1 0 11122222211 10 0001123334444 44
Q ss_pred EEEEeCCEEEEEEecCCCCHHHHHHHHHHHHH-HHHHHh
Q 021735 61 MFIQHNNVYLMAASRQNCNAASILLFLHRVAD-VFKHYF 98 (308)
Q Consensus 61 v~~~~~~Ly~v~v~~~~~n~l~~~~~L~~~~~-~l~~y~ 98 (308)
.|..-.++-||++++..++.+ =++|+++.+ +.-+|.
T Consensus 79 ~~eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~yv 115 (159)
T 3cue_C 79 TYCTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKYV 115 (159)
T ss_dssp EECCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHHH
Confidence 555556899999998775533 255677775 655554
No 24
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=33.72 E-value=31 Score=29.47 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCEEEEEccC
Q 021735 5 ASALFLLDIKGRVLIWRDYR 24 (308)
Q Consensus 5 I~~i~Il~~~G~~ll~r~y~ 24 (308)
|-++||+|+.|.+++++.|.
T Consensus 3 iy~~yi~~~~~~liy~~~~~ 22 (219)
T 2j3t_D 3 IFSVYVVNKAGGLIYQLDSY 22 (219)
T ss_dssp EEEEEEECTTSCEEEEEECC
T ss_pred EEEEEEEecCCceEEecccC
Confidence 89999999999999997776
No 25
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=24.33 E-value=1.1e+02 Score=23.71 Aligned_cols=21 Identities=29% Similarity=0.751 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHcCCeee
Q 021735 107 RDNFVVVYELLDEIMDFGFPQ 127 (308)
Q Consensus 107 ~~n~~~v~~lLDEiid~G~p~ 127 (308)
+.+|..|..++.+|=+.|.|=
T Consensus 88 ~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 88 KARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCc
Confidence 467888888888888888763
Done!