BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021737
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/309 (65%), Positives = 248/309 (80%), Gaps = 2/309 (0%)
Query: 1 MAEKSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVS-DPVKGKLVEDFKNLGVTL 59
M +S+IL++G TGYIG+ + +AS+ GHPTF LVRE+T S + K +L+E FK G +
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANI 60
Query: 60 LHGDLHDHESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFGNDVDR 119
+HG + DH SLV+A+K VDVVISTVG++Q+ Q +I AIKE G VKRFFPSEFGNDVD
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDN 120
Query: 120 VNAVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDKLTIL 179
V+AVEPAKS F +KA++RRA+EAEGIP+T+V+SNCFAGYFL +L Q G++ PPRDK+ IL
Sbjct: 121 VHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVIL 180
Query: 180 GDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLD 239
GDGNA+ VF KE DI TFTIKAVDDPRTLNK LY+R P NT S NELVALWEK I KTL+
Sbjct: 181 GDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLE 240
Query: 240 KVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTT 299
K YVPE+++LK I + P P NI +AI+HS+FV GDQTNF I P+ GVEAS+LYPDVKYTT
Sbjct: 241 KAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPA-GVEASQLYPDVKYTT 299
Query: 300 VEEYLHQFV 308
V+EYL FV
Sbjct: 300 VDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 354 bits (909), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 232/307 (75%), Gaps = 3/307 (0%)
Query: 4 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVREN-TVSDP-VKGKLVEDFKNLGVTLLH 61
++KIL++G TG IG+ IV AS+KAG+PT+ALVR+ T ++P K +L++++++LGV LL
Sbjct: 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLE 61
Query: 62 GDLHDHESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFGNDVDRVN 121
GD++DHE+LVKAIKQVD+VI G + + DQ K+I AIKEAGNVK+FFPSEFG DVDR +
Sbjct: 62 GDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHD 121
Query: 122 AVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDKLTILGD 181
AVEP + F KA IRR +EAEG+P+T++ + F GYFL L Q + PPRDK+ ILGD
Sbjct: 122 AVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGD 181
Query: 182 GNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKV 241
GN K + E D+ TFTI+A +DP TLNK ++IR PKN + NE++ALWEK IGKTL+K
Sbjct: 182 GNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKT 241
Query: 242 YVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVE 301
YV E+Q+LK+IQE+ P N +LA+ HS + GD + I+P+ +EASE YPDV YTT +
Sbjct: 242 YVSEEQVLKDIQESSFPHNYLLALYHSQQIKGDAV-YEIDPAKDIEASEAYPDVTYTTAD 300
Query: 302 EYLHQFV 308
EYL+QFV
Sbjct: 301 EYLNQFV 307
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 300 bits (767), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 149/314 (47%), Positives = 212/314 (67%), Gaps = 7/314 (2%)
Query: 1 MAEKSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLL 60
M +KS++L+VGGTGYIGK IV AS+ GHPT+ L R VS+ K +++ FK LG L+
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 61 HGDLHDHESLVKAIKQVDVVISTVG----NMQLADQTKLITAIKEAGNVKRFFPSEFGND 116
L DH+ LV A+KQVDVVIS + + + +Q KL+ AIKEAGN+KRF PSEFG D
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMD 120
Query: 117 VDRV-NAVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQ-PGVSVPPRD 174
D + +A++P +F K ++RRA+EA IP+T+V+SN FAGYF +L Q G +PPRD
Sbjct: 121 PDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRD 180
Query: 175 KLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLI 234
K+ I GDGN K ++ E D+ T+TIK++DDP+TLNK +YIRPP N S E++ +WE+L
Sbjct: 181 KVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLS 240
Query: 235 GKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPD 294
+ LDK+Y+ L ++++ IV + +F GD NF I P+ +EA++LYP+
Sbjct: 241 EQNLDKIYISSQDFLADMKDKSYEEKIVRCHLYQIFFRGDLYNFEIGPN-AIEATKLYPE 299
Query: 295 VKYTTVEEYLHQFV 308
VKY T++ YL ++V
Sbjct: 300 VKYVTMDSYLERYV 313
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/304 (43%), Positives = 196/304 (64%), Gaps = 2/304 (0%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTV-SDPVKGKLVEDFKNLGVTLLHGDL 64
KI++ GGTGYIGKF+V AS+ HPTF R T S P +L E+F+++GVT++ G++
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 65 HDHESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFGNDVDRVNAVE 124
+HE +V +KQVD+VIS + ++ Q +I AIK AGN+KRF PS+FG + DR+ +
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLP 125
Query: 125 PAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNA 184
P +S K IRRA+EA +P+T+V++NCF YF+ L P D + I G G
Sbjct: 126 PFESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVIYGTGET 185
Query: 185 KAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVP 244
K V N E DIA +TIK DPR N+++ RPPKN S NEL++LWE G + KV++P
Sbjct: 186 KFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245
Query: 245 EDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYL 304
++QL++ QE P P NI ++I HS+FV GD ++ + +EAS LYP++++T+++ L
Sbjct: 246 DEQLVRLSQELPQPQNIPVSILHSIFVKGDLMSYEMRKD-DIEASNLYPELEFTSIDGLL 304
Query: 305 HQFV 308
F+
Sbjct: 305 DLFI 308
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 138/305 (45%), Positives = 204/305 (66%), Gaps = 8/305 (2%)
Query: 4 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGD 63
KSKIL+ GGTGYIG +V+ S+K GHPT+ R N+ K L+++F++LG ++ G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGE 66
Query: 64 LHDHESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFGNDVDRVNAV 123
L +HE LV+ +K+VDVVIS + Q+ DQ K++ AIK AGN+KRF PS+FG + DR+NA+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 EPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGN 183
P ++ K IRRA+E IP+T+V++NCFA YF+ L +P P+D++T+ G G
Sbjct: 127 PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 183
Query: 184 AKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYV 243
AK N E DI +TIK DPR LN+V+ RP N + EL++ WEK IGK K++V
Sbjct: 184 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 243
Query: 244 PEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEY 303
PE++++ +E P P NI +AI H +F++G ++ + + VEAS LYP++K+TT++E
Sbjct: 244 PEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDEL 302
Query: 304 LHQFV 308
L FV
Sbjct: 303 LDIFV 307
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 261 bits (668), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 138/305 (45%), Positives = 204/305 (66%), Gaps = 8/305 (2%)
Query: 4 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGD 63
KSKIL+ GGTGYIG +V+ S+K GHPT+ R N+ K L+++F++LG ++ G+
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGE 62
Query: 64 LHDHESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFGNDVDRVNAV 123
L +HE LV+ +K+VDVVIS + Q+ DQ K++ AIK AGN+KRF PS+FG + DR+NA+
Sbjct: 63 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 122
Query: 124 EPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGN 183
P ++ K IRRA+E IP+T+V++NCFA YF+ L +P P+D++T+ G G
Sbjct: 123 PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 179
Query: 184 AKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYV 243
AK N E DI +TIK DPR LN+V+ RP N + EL++ WEK IGK K++V
Sbjct: 180 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 239
Query: 244 PEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEY 303
PE++++ +E P P NI +AI H +F++G ++ + + VEAS LYP++K+TT++E
Sbjct: 240 PEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDEL 298
Query: 304 LHQFV 308
L FV
Sbjct: 299 LDIFV 303
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 261 bits (666), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 137/305 (44%), Positives = 204/305 (66%), Gaps = 8/305 (2%)
Query: 4 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGD 63
KSKIL+ GGTGYIG +V+ S+K GHPT+ R N+ K L+++F++LG ++ G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGE 66
Query: 64 LHDHESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFGNDVDRVNAV 123
L +HE LV+ +K+VDVVIS + Q+ DQ K++ AIK AGN+KRF PS+FG + DR+NA+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 EPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGN 183
P ++ + IRRA+E IP+T+V++NCFA YF+ L +P P+D++T+ G G
Sbjct: 127 PPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 183
Query: 184 AKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYV 243
AK N E DI +TIK DPR LN+V+ RP N + EL++ WEK IGK K++V
Sbjct: 184 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 243
Query: 244 PEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEY 303
PE++++ +E P P NI +AI H +F++G ++ + + VEAS LYP++K+TT++E
Sbjct: 244 PEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDEL 302
Query: 304 LHQFV 308
L FV
Sbjct: 303 LDIFV 307
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 260 bits (665), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/305 (45%), Positives = 203/305 (66%), Gaps = 8/305 (2%)
Query: 4 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGD 63
KSKIL+ GGTGYIG +V+ S+K GHPT+ R N+ K L+++F++LG ++ G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGE 66
Query: 64 LHDHESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFGNDVDRVNAV 123
L +HE LV+ +K+VDVVIS + Q DQ K++ AIK AGN+KRF PS+FG + DR+NA+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 EPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGN 183
P ++ K IRRA+E IP+T+V++NCFA YF+ L +P P+D++T+ G G
Sbjct: 127 PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 183
Query: 184 AKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYV 243
AK N E DI +TIK DPR LN+V+ RP N + EL++ WEK IGK K++V
Sbjct: 184 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 243
Query: 244 PEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEY 303
PE++++ +E P P NI +AI H +F++G ++ + + VEAS LYP++K+TT++E
Sbjct: 244 PEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDEL 302
Query: 304 LHQFV 308
L FV
Sbjct: 303 LDIFV 307
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 187/307 (60%), Gaps = 3/307 (0%)
Query: 4 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGD 63
K ++L+ G TG+IG+F+ AS+ A PT+ L R S P K K+ + ++ G +++G
Sbjct: 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS-PSKAKIFKALEDKGAIIVYGL 68
Query: 64 LHDHESLVKAIKQ--VDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFGNDVDRVN 121
+++ E++ K +K+ +D+V+STVG + DQ L+ A+K G +KRF PSEFG+DV+R +
Sbjct: 69 INEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRAD 128
Query: 122 AVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDKLTILGD 181
VEP + + K ++R+ VE GIP T++ N A + P +PP D I GD
Sbjct: 129 PVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGD 188
Query: 182 GNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKV 241
GN KA F TDI FT+K VDD RTLNK ++ RP N + NEL ++WEK IG+TL +V
Sbjct: 189 GNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRV 248
Query: 242 YVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVE 301
V ED LL E +P ++V A H +F+ G Q NF+I+ VE + LYP+ + TVE
Sbjct: 249 TVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPEDSFRTVE 308
Query: 302 EYLHQFV 308
E +++
Sbjct: 309 ECFGEYI 315
>pdb|1XGK|A Chain A, Crystal Structure Of N12g And A18g Mutant Nmra
Length = 352
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 14/165 (8%)
Query: 1 MAEKSK-ILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNL-GVT 58
MA++ K I VVG TG G ++ + GH A V +KG + E+ + + VT
Sbjct: 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS------LKGLIAEELQAIPNVT 54
Query: 59 LLHGDLHDH----ESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFG 114
L G L ++ ++L + + ++ ++A L A K AG ++ + S
Sbjct: 55 LFQGPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114
Query: 115 NDVDRVNAVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYF 159
+ + PA ++ K + V G+P TFV + + F
Sbjct: 115 D--HSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNF 157
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 2 AEKSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLH 61
++ + V G +G+IG ++V ++ G+ A VR+ T VK L +TL
Sbjct: 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWK 62
Query: 62 GDLHDHESLVKAIK 75
DL D S +AIK
Sbjct: 63 ADLADEGSFDEAIK 76
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 14/83 (16%)
Query: 6 KILVVGGTGYIG----KFIVEASVKAGHPTFALVRENTV---SDPVKGKLVEDFKNLGVT 58
K+LV GG G+IG ++I+E HP + ++ + + S+P K +ED + T
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEK-----HPDWEVINIDKLGYGSNPANLKDLED--DPRYT 57
Query: 59 LLHGDLHDHESLVKAIKQVDVVI 81
+ GD+ D+E + + +++VD V+
Sbjct: 58 FVKGDVADYELVKELVRKVDGVV 80
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 4 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNL-----GVT 58
K ++ V GGTG++G +I+++ ++ G+ +R +DP + + V NL +
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR----ADPERKRDVSFLTNLPGASEKLH 56
Query: 59 LLHGDLHDHESLVKAIKQVDVVISTVGNMQLA 90
+ DL + +S AI+ + T + A
Sbjct: 57 FFNADLSNPDSFAAAIEGCVGIFHTASPIDFA 88
>pdb|1K6I|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Trigonal Form)
pdb|1K6J|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6J|B Chain B, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6X|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator In Complex With Nad At 1.5 A Resolution
(Trigonal Form)
pdb|1TI7|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator, In Complex With Nadp At 1.7a Resolution
pdb|2VUS|A Chain A, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|B Chain B, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|C Chain C, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|D Chain D, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|E Chain E, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|F Chain F, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|G Chain G, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|H Chain H, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUT|A Chain A, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|B Chain B, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|C Chain C, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|D Chain D, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|E Chain E, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|F Chain F, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|G Chain G, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|H Chain H, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|A Chain A, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|B Chain B, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|C Chain C, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|D Chain D, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|E Chain E, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|F Chain F, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|G Chain G, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|H Chain H, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
Length = 352
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 1 MAEKSK-ILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNL-GVT 58
MA++ K I VV TG ++ + GH A V +KG + E+ + + VT
Sbjct: 1 MAQQKKTIAVVNATGRQAASLIRVAAAVGHHVRAQVHS------LKGLIAEELQAIPNVT 54
Query: 59 LLHGDLHDH----ESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFG 114
L G L ++ ++L + + ++ ++A L A K AG ++ + S
Sbjct: 55 LFQGPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114
Query: 115 NDVDRVNAVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYF 159
+ + PA ++ K + V G+P TFV + + F
Sbjct: 115 DH--SLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNF 157
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 1 MAEKSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVK-GKLVEDFKNLGVTL 59
M + IL+ GGTG GK V + + +V D +K ++ +F + +
Sbjct: 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR---DELKQSEMAMEFNDPRMRF 74
Query: 60 LHGDLHDHESLVKAIKQVDVVI 81
GD+ D E L A++ VD+ I
Sbjct: 75 FIGDVRDLERLNYALEGVDICI 96
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 29/238 (12%)
Query: 7 ILVVGGTGYIGKFIVE---ASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGD 63
I V G TG +G +++ A+V A A+VR + K + D GV + HGD
Sbjct: 3 IAVTGATGQLGGLVIQHLXAAVPASQ-IIAIVR-----NVEKASTLAD---QGVEVRHGD 53
Query: 64 LHDHESLVKAIKQVDVVISTVG-----NMQLADQTKLITAIKEAGNVKRFFPSEFGNDVD 118
+ ESL KA V ++ G + + ++ A ++AG VK + + +
Sbjct: 54 YNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAG-VKHIAYTGYAFAEE 112
Query: 119 RVNAVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDKLTI 178
+ + A + + IR IP+TF+ + + +F+ + S +T
Sbjct: 113 SI--IPLAHVHLATEYAIRTT----NIPYTFLRNALYTDFFVNEGLR--ASTESGAIVTN 164
Query: 179 LGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGK 236
G G +V E +A T+ + L P ++F+EL + ++ GK
Sbjct: 165 AGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQP---WTFDELAQILSEVSGK 219
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 35/241 (14%)
Query: 7 ILVVGGTGYIGKFIVEASVKA--GHPTFALVRE----NTVSDPVKGKLVEDFKNLGVTLL 60
I V G TG +G +++ +K A+VR +T++D GV +
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQ------------GVEVR 50
Query: 61 HGDLHDHESLVKAIKQVDVVISTVG-----NMQLADQTKLITAIKEAGNVKRFFPSEFGN 115
HGD + ESL KA V ++ G + + ++ A ++AG VK + +
Sbjct: 51 HGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAG-VKHIAYTGYAF 109
Query: 116 DVDRVNAVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDK 175
+ + + A + + IR IP+TF+ + + +F+ + S
Sbjct: 110 AEESI--IPLAHVHLATEYAIRTT----NIPYTFLRNALYTDFFVNEGLR--ASTESGAI 161
Query: 176 LTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIG 235
+T G G +V E +A T+ + L P ++F+EL + ++ G
Sbjct: 162 VTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQP---WTFDELAQILSEVSG 218
Query: 236 K 236
K
Sbjct: 219 K 219
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 35/241 (14%)
Query: 7 ILVVGGTGYIGKFIVEASVKA--GHPTFALVRE----NTVSDPVKGKLVEDFKNLGVTLL 60
I V G TG +G +++ +K A+VR +T++D GV +
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQ------------GVEVR 50
Query: 61 HGDLHDHESLVKAIKQVDVVISTVG-----NMQLADQTKLITAIKEAGNVKRFFPSEFGN 115
HGD + ESL KA V ++ G + + ++ A ++AG VK + +
Sbjct: 51 HGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAG-VKHIAYTGYAF 109
Query: 116 DVDRVNAVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDK 175
+ + + A + + IR IP+TF+ + + +F+ + S
Sbjct: 110 AEESI--IPLAHVHLATEYAIRTT----NIPYTFLRNALYTDFFVNEGLR--ASTESGAI 161
Query: 176 LTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIG 235
+T G G +V E +A T+ + L P ++F+EL + ++ G
Sbjct: 162 VTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQP---WTFDELAQILSEVSG 218
Query: 236 K 236
K
Sbjct: 219 K 219
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19
Length = 224
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGDLH 65
KI V+G TG G IV + + GH A+VR+ + G V + L DL
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLD 61
Query: 66 DHESLVKAIK 75
+++V A+
Sbjct: 62 SVDAVVDALS 71
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 24/107 (22%)
Query: 1 MAEKSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENT--------VSDPVK----GKL 48
MA+K K+ ++G TG +G+ +V+ K HP LV+ + D VK G +
Sbjct: 1 MADKIKVSLLGSTGMVGQKMVKMLAK--HPYLELVKVSASPSKIGKKYKDAVKWIEQGDI 58
Query: 49 VEDFKNLGVTLLHGDLHDHESLVKAIKQVDVVISTVGNMQLADQTKL 95
E+ ++L ++ + DH K VDVV+S + N +LA+ +L
Sbjct: 59 PEEVQDL--PIVSTNYEDH-------KDVDVVLSALPN-ELAESIEL 95
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFK 53
KI V GGTG++G+++VE+ G+ L R + K + D++
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTR------SIGNKAINDYE 45
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 7 ILVVGGTGYIGKFIVEASVKA--GHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGDL 64
I + G TG +G +++E+ +K A+VR +P K + G+T+ D
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVR-----NPAK---AQALAAQGITVRQADY 53
Query: 65 HDHESLVKAIKQVD--VVISTVGNMQLADQTK-LITAIKEAG 103
D +L A++ V+ ++IS+ Q A Q + +I A K AG
Sbjct: 54 GDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAG 95
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 37/242 (15%)
Query: 7 ILVVGGTGYIGKFIVE---ASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGD 63
I V G TG +G +++ A+V A A+VR + K + D GV + HGD
Sbjct: 3 IAVTGATGQLGGLVIQHLXAAVPASQ-IIAIVR-----NVEKASTLAD---QGVEVRHGD 53
Query: 64 LHDHESLVKAIKQVDVVISTVG-----NMQLADQTKLITAIKEAGNVKRFFPSEFGNDVD 118
+ ESL KA V ++ G + + ++ A ++AG VK + +
Sbjct: 54 YNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAG-VKHIAYTGYAF--- 109
Query: 119 RVNAVEPAKSSFSIKAQIRRAVE----AEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRD 174
A+ S A + A E IP+TF+ + + +F+ + S
Sbjct: 110 -------AEESIIPLAHVHLATEYATRTTNIPYTFLRNALYTDFFVNEGLR--ASTESGA 160
Query: 175 KLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLI 234
+T G G +V E +A T+ + L P ++F+EL + ++
Sbjct: 161 IVTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQP---WTFDELAQILSEVS 217
Query: 235 GK 236
GK
Sbjct: 218 GK 219
>pdb|4E2E|A Chain A, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN
5- Monooxygenase Activation Protein, Gamma Polypeptide
(Ywhag) From Homo Sapiens At 2.25 A Resolution
Length = 248
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 194 IATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEK--LIGKTLDKVYVPEDQLLKN 251
+ + IK + + +KV Y++ + Y + VA EK + ++ +K Y ++ K
Sbjct: 105 LDNYLIKNCSETQYESKVFYLKXKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKE 164
Query: 252 IQEAPLPLNIVLAINHSVF 270
+ P+ + LA+N+SVF
Sbjct: 165 HXQPTHPIRLGLALNYSVF 183
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 8 LVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKN------LGVTLLH 61
L+ G TG G ++ E ++ G+ +VR ++ + G++ +KN + L +
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNT--GRIEHLYKNPQAHIEGNMKLHY 85
Query: 62 GDLHDHESLVKAIKQV 77
GDL D LVK I +V
Sbjct: 86 GDLTDSTCLVKIINEV 101
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 105 VKRFFPSEFGNDVDRVNAVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFL 160
+K+ P + N + + + +E I +A EA GIPHTF + G+F
Sbjct: 323 LKQLTPDSYKNFIKKGDRLEEG---------ISKAAEAHGIPHTFNRAGSMIGFFF 369
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTF----ALVRENTVSDPVKGKLVEDFKNLGVTLLH 61
++LV GG G+IG V + +P +V ++ + L + + +H
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 62 GDLHDHESLVKAIKQVDVVI 81
GD+ D L + ++ VD ++
Sbjct: 62 GDIRDAGLLARELRGVDAIV 81
>pdb|3UZD|A Chain A, Crystal Structure Of 14-3-3 Gamma
Length = 248
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 194 IATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEK--LIGKTLDKVYVPEDQLLKN 251
+ + IK + + +KV Y++ + Y + VA EK + ++ +K Y ++ K
Sbjct: 104 LDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKE 163
Query: 252 IQEAPLPLNIVLAINHSVF 270
+ P+ + LA+N+SVF
Sbjct: 164 HMQPTHPIRLGLALNYSVF 182
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose
4,6-Dehydratase) From Streptomyces Venezuelae With Nad
And Tyd Bound
Length = 337
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTF----ALVRENTVSDPVKGKLVEDFKNLGVTLLH 61
++LV GG G+IG V + +P +V ++ + L + + +H
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 62 GDLHDHESLVKAIKQVDVVI 81
GD+ D L + ++ VD ++
Sbjct: 62 GDIRDAGLLARELRGVDAIV 81
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 4 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVE---DFKNLG-VTL 59
K VVGGTG++ +V+ ++ G+ TV DP K V + + LG + +
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAV-----NTTVRDPDNQKKVSHLLELQELGDLKI 63
Query: 60 LHGDLHDHESLVKAIKQVDVVISTVGNMQLADQ 92
DL D S I D V + A +
Sbjct: 64 FRADLTDELSFEAPIAGCDFVFHVATPVHFASE 96
>pdb|2B05|A Chain A, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|B Chain B, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|C Chain C, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|D Chain D, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|E Chain E, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|F Chain F, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
Length = 246
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 194 IATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEK--LIGKTLDKVYVPEDQLLKN 251
+ + IK + + +KV Y++ + Y + VA EK + ++ +K Y ++ K
Sbjct: 103 LDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKE 162
Query: 252 IQEAPLPLNIVLAINHSVF 270
+ P+ + LA+N+SVF
Sbjct: 163 HMQPTHPIRLGLALNYSVF 181
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 7 ILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHG--DL 64
+L+ GG G IG+ + G L P +L E+ + G ++H D+
Sbjct: 262 VLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDV 321
Query: 65 HDHESLV 71
+ ++L
Sbjct: 322 AERDALA 328
>pdb|3EW7|A Chain A, Crystal Structure Of The Lmo0794 Protein From Listeria
Monocytogenes. Northeast Structural Genomics Consortium
Target Lmr162
Length = 221
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGDLH 65
KI ++G TG G I+E + GH A+VR GK+ + K+ + +L D+
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRN-------AGKITQTHKD--INILQKDIF 52
Query: 66 D 66
D
Sbjct: 53 D 53
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 7 ILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHG---- 62
+LV GG GYIG V ++ G+ + V+D + + L V H
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGY-------DCVVADNLSNSTYDSVARLEVLTKHHIPFY 66
Query: 63 --DLHDHESLVKAIKQ--VDVVISTVGNMQLADQTKL 95
DL D + L K K+ +D VI G + + T++
Sbjct: 67 EVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQI 103
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM
BACILLUS HALODURANS
Length = 236
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALV---------RENTVSDPVKGKLVEDFKN 54
++LVVG G + ++++ GH A V RE SD V L EDF +
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGPELRERGASDIVVANLEEDFSH 80
>pdb|3U9L|A Chain A, The Crystal Structure Of
3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From
Sinorhizobium Meliloti
Length = 324
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 4 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDF---KNLGVTLL 60
K IL+ G + G+ EA AGH +A R+ + + + F ++ + L
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASXRDIVGRNASNVEAIAGFARDNDVDLRTL 64
Query: 61 HGDLHDHESLVKAIKQ-------VDVVISTVGN 86
D+ S+ +AI Q +DV+I G+
Sbjct: 65 ELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGH 97
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 9 VVGGTGY-IGKFIVEASVKAGHPTFALVRENTVS--DPVKGKLVEDFKNLGVTLLHGDLH 65
++ +GY IG VE ++ HP A+V +S DPV+G++V+ F L L H
Sbjct: 458 IINSSGYRIGPSEVENALME-HP--AVVETAVISSPDPVRGEVVKAFVVLASQFLS---H 511
Query: 66 DHESLVKAIKQ 76
D E L K ++Q
Sbjct: 512 DPEQLTKELQQ 522
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 9 VVGGTGY-IGKFIVEASVKAGHPTFALVRENTVS--DPVKGKLVEDFKNLGVTLLHGDLH 65
++ +GY IG VE ++ HP A+V +S DPV+G++V+ F L L H
Sbjct: 458 IINSSGYRIGPSEVENALME-HP--AVVETAVISSPDPVRGEVVKAFVVLASQFLS---H 511
Query: 66 DHESLVKAIKQ 76
D E L K ++Q
Sbjct: 512 DPEQLTKELQQ 522
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp
pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp
pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump
Length = 217
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 45 KGKLVEDFKNLGVTLLHGDLHDHESLVKAIKQ-------VDVVISTVGNMQL 89
K L+E+ KN +T +G+ + ES+ KAI++ ++ + T GN Q+
Sbjct: 122 KSNLLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPYIECNVDTQGNHQI 173
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKL--VEDFKNLGVTLLHGD 63
++LV GG+GYIG ++ GH L + + + + L +E T + GD
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 64 LHDHESLVKAI---KQVDVVISTVGNMQLADQT---------------KLITAIKEAGNV 105
+ + E+L+ I +D VI G + + +LI+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 106 KRFF 109
K F
Sbjct: 117 KNFI 120
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKL--VEDFKNLGVTLLHGD 63
++LV GG+GYIG ++ GH L + + + + L +E T + GD
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 64 LHDHESLVKAI---KQVDVVISTVGNMQLADQT---------------KLITAIKEAGNV 105
+ + E+L+ I +D VI G + + +LI+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 106 KRFF 109
K F
Sbjct: 117 KNFI 120
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKL--VEDFKNLGVTLLHGD 63
++LV GG+GYIG ++ GH L + + + + L +E T + GD
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 64 LHDHESLVKAI---KQVDVVISTVGNMQLADQT---------------KLITAIKEAGNV 105
+ + E+L+ I +D VI G + + +LI+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 106 KRFF 109
K F
Sbjct: 117 KNFI 120
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKL--VEDFKNLGVTLLHGD 63
++LV GG+GYIG ++ GH L + + + + L +E T + GD
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 64 LHDHESLVKAI---KQVDVVISTVGNMQLADQT---------------KLITAIKEAGNV 105
+ + E+L+ I +D VI G + + +LI+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 106 KRFF 109
K F
Sbjct: 117 KNFI 120
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKL--VEDFKNLGVTLLHGD 63
++LV GG+GYIG ++ GH L + + + + L +E T + GD
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 64 LHDHESLVKAI---KQVDVVISTVGNMQLADQT---------------KLITAIKEAGNV 105
+ + E+L+ I +D VI G + + +LI+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 106 KRFF 109
K F
Sbjct: 117 KNFI 120
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKL--VEDFKNLGVTLLHGD 63
++LV GG+GYIG ++ GH L + + + + L +E T + GD
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 64 LHDHESLVKAI---KQVDVVISTVGNMQLADQT---------------KLITAIKEAGNV 105
+ + E+L+ I +D VI G + + +LI+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 106 KRFF 109
K F
Sbjct: 117 KNFI 120
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKL--VEDFKNLGVTLLHGD 63
++LV GG+GYIG ++ GH L + + + + L +E T + GD
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 64 LHDHESLVKAI---KQVDVVISTVGNMQLADQT---------------KLITAIKEAGNV 105
+ + E+L+ I +D VI G + + +LI+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 106 KRFF 109
K F
Sbjct: 117 KNFI 120
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKL--VEDFKNLGVTLLHGD 63
++LV GG+GYIG ++ GH L + + + + L +E T + GD
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 64 LHDHESLVKAI---KQVDVVISTVGNMQLADQT---------------KLITAIKEAGNV 105
+ + E+L+ I +D VI G + + +LI+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 106 KRFF 109
K F
Sbjct: 117 KNFI 120
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKL--VEDFKNLGVTLLHGD 63
++LV GG+GYIG ++ GH L + + + + L +E T + GD
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 64 LHDHESLVKAI---KQVDVVISTVGNMQLADQT---------------KLITAIKEAGNV 105
+ + E+L+ I +D VI G + + +LI+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 106 KRFF 109
K F
Sbjct: 117 KNFI 120
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 26/108 (24%)
Query: 59 LLHGDLHDHESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAGNVKRFF--------- 109
++ GD+ +H +L +A + D+V + + L Q + A +A +VKR
Sbjct: 71 IIXGDVLNHAALKQAXQGQDIVYANLTGEDLDIQANSVIAAXKACDVKRLIFVLSLGIYD 130
Query: 110 --PSEFGNDVDRVNAV--EPAKSSFSIKAQIRR---AVEAEGIPHTFV 150
P +F V+ NAV EP K RR A+EA G+ +T +
Sbjct: 131 EVPGKF---VEWNNAVIGEPLKP-------FRRAADAIEASGLEYTIL 168
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKL--VEDFKNLGVTLLHGD 63
++LV GG+GYIG ++ GH L + + + + L +E T + GD
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 64 LHDHESLVKAI---KQVDVVISTVGNMQLADQT---------------KLITAIKEAGNV 105
+ + E+L+ I +D VI G + + +LI+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 106 KRFF 109
K F
Sbjct: 117 KNFI 120
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 23/89 (25%)
Query: 4 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVK----------GKLVE--- 50
K +IL+ GG G+IG + A V +G E TV D ++ GK +E
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGE-------EVTVLDDLRVPPMIPPEGTGKFLEKPV 59
Query: 51 ---DFKNLGVTLLHGDLHDHESLVKAIKQ 76
+ ++L L L H+S+ ++ KQ
Sbjct: 60 LELEERDLSDVRLVYHLASHKSVPRSFKQ 88
>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
Length = 201
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 19 FIVEASVKAGHPTFALVRENTVSDPVKGK---LVEDFKNLGVTLLH 61
F V + AG + + R+NT+ DP+ GK +V DFK L +L
Sbjct: 154 FDVIGAKNAGMRSIFVNRKNTIVDPIGGKPDVIVNDFKELYEWILR 199
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGD 63
++LV GG GYIG V A ++ + + +V ++ V K VE +N+ L D
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIV-DSLVGTHGKSDHVETRENVARKLQQSD 60
>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
Length = 206
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 19 FIVEASVKAGHPTFALVRENTVSDPVKGK---LVEDFKNLGVTLLH 61
F V + AG + + R+NT+ DP+ GK +V DFK L +L
Sbjct: 159 FDVIGAKNAGMRSIFVNRKNTIVDPIGGKPDVIVNDFKELYEWILR 204
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 1 MAEKSKILVVGGTGYIGKFIVEASVKAGH 29
MAEK +LV GG GYIG V ++AG+
Sbjct: 1 MAEK--VLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 1 MAEKSKILVVGGTGYIGKFIVEASVKAGH 29
MAEK +LV GG GYIG V ++AG+
Sbjct: 1 MAEK--VLVTGGAGYIGSHTVLELLEAGY 27
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 27 AGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGDLHDHESLVKAIKQVDVVISTVGN 86
AG + R + P+ L++ N VT+ H + LVK Q D+++ VG
Sbjct: 178 AGKHAVVVGRSAILGKPMAMMLLQ--ANATVTICHSRTQNLPELVK---QADIIVGAVGK 232
Query: 87 MQL--ADQTKLITAIKEAGNVKRFFPSEFGNDVD-RVNAVEPAKSSF----------SIK 133
+L D K + +AG F P + G D ++ +E S++ +I
Sbjct: 233 AELIQKDWIKQGAVVVDAG----FHPRDGGGVGDIQLQGIEEIASAYTPVPGGVGPMTIT 288
Query: 134 AQIRRAVEA 142
IR+ VEA
Sbjct: 289 TLIRQTVEA 297
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 1 MAEKSKILVVGGTGYIGKFIVEASVKAGH 29
MAEK +LV GG GYIG V ++AG+
Sbjct: 1 MAEK--VLVTGGAGYIGSHTVLELLEAGY 27
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 29/149 (19%)
Query: 44 VKGKLVEDFKNLGVTLLHGDLHDHESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAG 103
V ++ + FK LGVT+L ES+ QV V ++ G Q K++ AI A
Sbjct: 216 VSKEIEKQFKKLGVTILTAT--KVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAP 273
Query: 104 NVKRFFPSEFG-----------NDVDRVNAVE-PAKSSFSIKAQIRRAVEAEGIPHTFVA 151
NV+ + + G +D R N A + Q+ EA+G+ VA
Sbjct: 274 NVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGV----VA 329
Query: 152 SNCFAG---------YFLP--TLCQPGVS 169
+ AG LP T CQP V+
Sbjct: 330 AETIAGAETLTLGDHRMLPRATFCQPNVA 358
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 29/149 (19%)
Query: 44 VKGKLVEDFKNLGVTLLHGDLHDHESLVKAIKQVDVVISTVGNMQLADQTKLITAIKEAG 103
V ++ + FK LGVT+L ES+ QV V ++ G Q K++ AI A
Sbjct: 214 VSKEIEKQFKKLGVTILTAT--KVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAP 271
Query: 104 NVKRFFPSEFG-----------NDVDRVNAVE-PAKSSFSIKAQIRRAVEAEGIPHTFVA 151
NV+ + + G +D R N A + Q+ EA+G+ VA
Sbjct: 272 NVEGYGLDKAGVALTDRKAIGVDDYXRTNVGHIYAIGDVNGLLQLAHVAEAQGV----VA 327
Query: 152 SNCFAG---------YFLP--TLCQPGVS 169
+ AG LP T CQP V+
Sbjct: 328 AETIAGAETLTLGDHRXLPRATFCQPNVA 356
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 6 KILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGDLH 65
++LV GG G+IG IVE + G E V D + E+ GV DL
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARG-------LEVAVLDNLATGKRENVPK-GVPFFRVDLR 53
Query: 66 DHESLVKAIKQ 76
D E + +A ++
Sbjct: 54 DKEGVERAFRE 64
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 43 PVKGKLVEDFKNLGVTLLHGD--LHDHESLVKAIKQVDVVISTVGNMQLAD 91
P G E K++ LL G LH H + + +K ++++++ G ++LAD
Sbjct: 113 PEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLAD 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,099,011
Number of Sequences: 62578
Number of extensions: 371839
Number of successful extensions: 1259
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1202
Number of HSP's gapped (non-prelim): 86
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)