BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021738
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L8W|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
Xanthin
pdb|3L9G|A Chain A, Urate Oxidase Complexed With Uric Acid And Chloride
pdb|3LBG|A Chain A, Urate Oxidase Complexed With 8-Thio Xanthine
pdb|3LD4|A Chain A, Urate Oxidase Complexed With 8-Nitro Xanthine
Length = 296
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 155/294 (52%), Gaps = 9/294 (3%)
Query: 13 RHGKARVRVARVWRS-KEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYA 71
R+GK VRV +V + K G + E V + L + +Y DNS IVATD+IKNT+Y
Sbjct: 8 RYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYI 67
Query: 72 KAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KLGS 130
AK+ E F +L HF Y + +A V IV W + +DG+ H H F +
Sbjct: 68 TAKQ-NPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSE 126
Query: 131 ERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTST 190
E+ +V V E + + S + GL +LK+T S F GF+RD+YT L +T +R+L+T+V +T
Sbjct: 127 EKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDAT 186
Query: 191 WRY-SYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLG 249
W++ ++ + + F + ++V + TF SASVQ+T+Y+MA+ +L
Sbjct: 187 WQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDN-----SASVQATMYKMAEQILA 241
Query: 250 RFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303
R I V +PN H+ ++LS +V+ P +P+G I+ + R
Sbjct: 242 RQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGR 295
>pdb|2PES|A Chain A, Urate Oxidase In Complex With Tris-Dipicolinate Lutetium
Length = 295
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 155/294 (52%), Gaps = 9/294 (3%)
Query: 13 RHGKARVRVARVWRS-KEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYA 71
R+GK VRV +V + K G + E V + L + +Y DNS IVATD+IKNT+Y
Sbjct: 7 RYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYI 66
Query: 72 KAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KLGS 130
AK+ E F +L HF Y + +A V IV W + +DG+ H H F +
Sbjct: 67 TAKQ-NPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSE 125
Query: 131 ERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTST 190
E+ +V V E + + S + GL +LK+T S F GF+RD+YT L +T +R+L+T+V +T
Sbjct: 126 EKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDAT 185
Query: 191 WRY-SYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLG 249
W++ ++ + + F + ++V + TF SASVQ+T+Y+MA+ +L
Sbjct: 186 WQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDN-----SASVQATMYKMAEQILA 240
Query: 250 RFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303
R I V +PN H+ ++LS +V+ P +P+G I+ + R
Sbjct: 241 RQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGR 294
>pdb|1R4S|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its
Inhibitor 9- Methyl Uric Acid
pdb|1R4U|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its
Inhibitor Oxonic Acid
pdb|1R56|A Chain A, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|B Chain B, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|C Chain C, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|D Chain D, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|E Chain E, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|F Chain F, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|G Chain G, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|H Chain H, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1WRR|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
5-Amino 6-Nitro Uracil
pdb|1WS2|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With 5,6-
Diaminouracil
pdb|1WS2|B Chain B, Urate Oxidase From Aspergillus Flavus Complexed With 5,6-
Diaminouracil
pdb|1WS2|C Chain C, Urate Oxidase From Aspergillus Flavus Complexed With 5,6-
Diaminouracil
pdb|1WS2|D Chain D, Urate Oxidase From Aspergillus Flavus Complexed With 5,6-
Diaminouracil
pdb|1WS3|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
Uracil
pdb|1WS3|B Chain B, Urate Oxidase From Aspergillus Flavus Complexed With
Uracil
pdb|1WS3|C Chain C, Urate Oxidase From Aspergillus Flavus Complexed With
Uracil
pdb|1WS3|D Chain D, Urate Oxidase From Aspergillus Flavus Complexed With
Uracil
pdb|1XT4|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XXJ|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With 5-
Amino 6-Nitro Uracil
pdb|1XXJ|B Chain B, Urate Oxidase From Aspergillus Flavus Complexed With 5-
Amino 6-Nitro Uracil
pdb|1XXJ|C Chain C, Urate Oxidase From Aspergillus Flavus Complexed With 5-
Amino 6-Nitro Uracil
pdb|1XXJ|D Chain D, Urate Oxidase From Aspergillus Flavus Complexed With 5-
Amino 6-Nitro Uracil
pdb|1XY3|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|B Chain B, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|C Chain C, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|D Chain D, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|E Chain E, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|F Chain F, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|G Chain G, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|H Chain H, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|2FXL|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
Allantoin
pdb|3GKO|A Chain A, Crystal Structure Of Urate Oxydase Using Surfactant
Poloxamer 188 As A New Crystallizing Agent
pdb|1R51|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its
Inhibitor 8- Azaxanthin
Length = 301
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 155/294 (52%), Gaps = 9/294 (3%)
Query: 13 RHGKARVRVARVWRS-KEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYA 71
R+GK VRV +V + K G + E V + L + +Y DNS IVATD+IKNT+Y
Sbjct: 7 RYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYI 66
Query: 72 KAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KLGS 130
AK+ E F +L HF Y + +A V IV W + +DG+ H H F +
Sbjct: 67 TAKQ-NPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSE 125
Query: 131 ERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTST 190
E+ +V V E + + S + GL +LK+T S F GF+RD+YT L +T +R+L+T+V +T
Sbjct: 126 EKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDAT 185
Query: 191 WRY-SYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLG 249
W++ ++ + + F + ++V + TF SASVQ+T+Y+MA+ +L
Sbjct: 186 WQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDN-----SASVQATMYKMAEQILA 240
Query: 250 RFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303
R I V +PN H+ ++LS +V+ P +P+G I+ + R
Sbjct: 241 RQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGR 294
>pdb|2ZKA|A Chain A, Urate Oxidase Complexed With 8-Azaxanthine Under 1.0 Mpa
Oxygen Pressure
pdb|2ZKB|A Chain A, Urate Oxidase Complexed With 8-Azaxanthine Under 2.5 Mpa
Oxygen Pressure
pdb|3CKS|A Chain A, Urate Oxidase Complexed With 8-Azaxanthine Under 4.0 Mpa
Oxygen Pressure
pdb|3CKU|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its
Inhibitor 8-Azaxanthin And Chloride
pdb|3F2M|A Chain A, Urate Oxidase Complexed With 8-Azaxanthine At 150 Mpa
pdb|3PJK|A Chain A, Urate Oxidase Under 1.0 Mpa 10 BARS PRESSURE OF XENON
pdb|3PK3|A Chain A, Urate Oxidase Under 3.0 Mpa 30 BARS PRESSURE OF NITROUS
OXIDE
pdb|3PK4|A Chain A, Urate Oxidase Under 3.2 Mpa 32 BARS PRESSURE OF XENON
pdb|3PK5|A Chain A, Urate Oxidase Under 0.1 Mpa 1 BAR PRESSURE OF XENON
pdb|3PK6|A Chain A, Urate Oxidase Under 0.2 Mpa 2 BARS PRESSURE OF XENON
pdb|3PK8|A Chain A, Urate Oxidase Under 0.5 Mpa 5 BARS PRESSURE OF NITROUS
OXIDE
pdb|3PKF|A Chain A, Urate Oxidase Under 0.2 Mpa 2 BARS PRESSURE OF EQUIMOLAR
MIXTURE OF Xenon And Nitrous Oxide
pdb|3PKG|A Chain A, Urate Oxidase Under 2 Mpa 20 BARS PRESSURE OF XENON
pdb|3PKH|A Chain A, Urate Oxidase Under 1.5 Mpa 15 BARS PRESSURE OF XENON
pdb|3PKK|A Chain A, Urate Oxidase Under 0.5 Mpa 5 BARS PRESSURE OF XENON
pdb|3PKL|A Chain A, Urate Oxidase Under 0.8 Mpa 8 BARS PRESSURE OF XENON
pdb|3PKS|A Chain A, Urate Oxidase Under 1.5 Mpa 15 BARS PRESSURE OF NITROUS
OXIDE
pdb|3PKT|A Chain A, Urate Oxidase Under 2 Mpa 20 BARS PRESSURE OF NITROUS
OXIDE
pdb|3PKU|A Chain A, Urate Oxidase Under 1 Mpa 10 BARS PRESSURE OF NITROUS
OXIDE
pdb|3PLE|A Chain A, Urate Oxidase Under 0.5 Mpa 5 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3PLG|A Chain A, Urate Oxidase Under 1.0 Mpa 10 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3PLH|A Chain A, Urate Oxidase Under 1.5 Mpa 15 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3PLI|A Chain A, Urate Oxidase Under 1.8 Mpa 18 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3PLJ|A Chain A, Urate Oxidase Under 3.0 Mpa 30 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3PLM|A Chain A, Urate Oxidase Under 2.0 Mpa 20 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3OBP|A Chain A, Anaerobic Complex Of Urate Oxidase With Uric Acid
pdb|3P9O|A Chain A, Aerobic Ternary Complex Of Urate Oxidase With Azide And
Chloride
pdb|3P9F|A Chain A, Urate Oxidase-Azaxanthine-Azide Ternary Complex
pdb|2ICQ|A Chain A, Urate Oxidase Under 2.0 Mpa Pressure Of Nitrous Oxide
pdb|2IBA|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its
Inhibitor 8- Azaxanthine
pdb|2IC0|A Chain A, Urate Oxidase Under 2.0 Mpa Pressure Of Xenon
Length = 302
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 155/294 (52%), Gaps = 9/294 (3%)
Query: 13 RHGKARVRVARVWRS-KEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYA 71
R+GK VRV +V + K G + E V + L + +Y DNS IVATD+IKNT+Y
Sbjct: 8 RYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYI 67
Query: 72 KAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KLGS 130
AK+ E F +L HF Y + +A V IV W + +DG+ H H F +
Sbjct: 68 TAKQ-NPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSE 126
Query: 131 ERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTST 190
E+ +V V E + + S + GL +LK+T S F GF+RD+YT L +T +R+L+T+V +T
Sbjct: 127 EKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDAT 186
Query: 191 WRY-SYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLG 249
W++ ++ + + F + ++V + TF SASVQ+T+Y+MA+ +L
Sbjct: 187 WQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDN-----SASVQATMYKMAEQILA 241
Query: 250 RFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303
R I V +PN H+ ++LS +V+ P +P+G I+ + R
Sbjct: 242 RQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGR 295
>pdb|3BJP|A Chain A, Urate Oxidase Cyanide Uric Acid Ternary Complex
pdb|3BK8|A Chain A, Urate Oxidase Aza-Xanthine Complex In Cyanide
pdb|2FUB|A Chain A, Crystal Structure Of Urate Oxidase At 140 Mpa
Length = 301
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 155/294 (52%), Gaps = 9/294 (3%)
Query: 13 RHGKARVRVARVWRS-KEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYA 71
R+GK VRV +V + K G + E V + L + +Y DNS IVATD+IKNT+Y
Sbjct: 7 RYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYI 66
Query: 72 KAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KLGS 130
AK+ E F +L HF Y + +A V IV W + +DG+ H H F +
Sbjct: 67 TAKQ-NPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSE 125
Query: 131 ERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTST 190
E+ +V V E + + S + GL +LK+T S F GF+RD+YT L +T +R+L+T+V +T
Sbjct: 126 EKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDAT 185
Query: 191 WRY-SYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLG 249
W++ ++ + + F + ++V + TF SASVQ+T+Y+MA+ +L
Sbjct: 186 WQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDN-----SASVQATMYKMAEQILA 240
Query: 250 RFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303
R I V +PN H+ ++LS +V+ P +P+G I+ + R
Sbjct: 241 RQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGR 294
>pdb|2YZB|A Chain A, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Uric Acid (Substrate)
pdb|2YZB|B Chain B, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Uric Acid (Substrate)
pdb|2YZB|C Chain C, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Uric Acid (Substrate)
pdb|2YZB|D Chain D, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Uric Acid (Substrate)
pdb|2YZB|E Chain E, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Uric Acid (Substrate)
pdb|2YZB|F Chain F, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Uric Acid (Substrate)
pdb|2YZB|G Chain G, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Uric Acid (Substrate)
pdb|2YZB|H Chain H, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Uric Acid (Substrate)
pdb|2YZC|A Chain A, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Allantoate
pdb|2YZC|B Chain B, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Allantoate
pdb|2YZC|C Chain C, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Allantoate
pdb|2YZC|D Chain D, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Allantoate
pdb|2YZC|E Chain E, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Allantoate
pdb|2YZC|F Chain F, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Allantoate
pdb|2YZC|G Chain G, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Allantoate
pdb|2YZC|H Chain H, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With Allantoate
pdb|2YZD|A Chain A, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With 8-Azaxanthin (Inhibitor)
pdb|2YZD|B Chain B, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With 8-Azaxanthin (Inhibitor)
pdb|2YZD|C Chain C, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With 8-Azaxanthin (Inhibitor)
pdb|2YZD|D Chain D, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With 8-Azaxanthin (Inhibitor)
pdb|2YZD|E Chain E, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With 8-Azaxanthin (Inhibitor)
pdb|2YZD|F Chain F, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With 8-Azaxanthin (Inhibitor)
pdb|2YZD|G Chain G, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With 8-Azaxanthin (Inhibitor)
pdb|2YZD|H Chain H, Crystal Structure Of Uricase From Arthrobacter Globiformis
In Complex With 8-Azaxanthin (Inhibitor)
pdb|2YZE|A Chain A, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|2YZE|B Chain B, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|2YZE|C Chain C, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|2YZE|D Chain D, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|2YZE|E Chain E, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|2YZE|F Chain F, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|2YZE|G Chain G, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|2YZE|H Chain H, Crystal Structure Of Uricase From Arthrobacter Globiformis
Length = 302
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 162/298 (54%), Gaps = 26/298 (8%)
Query: 11 EQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVY 70
+ ++GKA VR+ +V R+ RH + + NV+ L D A+ DN+ +VATDT KNTVY
Sbjct: 17 QNQYGKAEVRLVKVTRNT-ARHEIQDLNVTSQLRGDFEAAHTAGDNAHVVATDTQKNTVY 75
Query: 71 AKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGS 130
A A++ + EEF + L KHFT + VT + W+ ++ H+H F
Sbjct: 76 AFARDGF--ATTEEFLLRLGKHFTEGFDWVTGGRWAAQQFFWDRIND----HDHAFSRNK 129
Query: 131 ERHTTEVTVQESGTLQ-MTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTS 189
T V ++ SG+ Q + +GIEGL +LK+T S F GF RDKYT L +T +R+LAT+V++
Sbjct: 130 SEVRTAV-LEISGSEQAIVAGIEGLTVLKSTGSEFHGFPRDKYTTLQETTDRILATDVSA 188
Query: 190 TWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLG 249
WRY+ V F Y +V+ +L+ F +S ++Q T+Y+M +AV+
Sbjct: 189 RWRYNTVEV--------DFDAVYASVRGLLLKAF-----AETHSLALQQTMYEMGRAVIE 235
Query: 250 RFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRFWSK 307
+I + + +PN H V+L +D ++V+ D P+G IEA+ R S+
Sbjct: 236 THPEIDEIKMSLPNKHHFLVDLQPFGQDN----PNEVFYAADRPYGLIEATIQREGSR 289
>pdb|1VAX|A Chain A, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|1VAX|B Chain B, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|1VAX|C Chain C, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|1VAX|D Chain D, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|1VAX|E Chain E, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|1VAX|F Chain F, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|1VAX|G Chain G, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|1VAX|H Chain H, Crystal Structure Of Uricase From Arthrobacter Globiformis
pdb|1VAY|A Chain A, Crystal Structure Of Uricase From Arthrobacter Globiformis
With Inhibitor 8-Azaxanthine
pdb|1VAY|B Chain B, Crystal Structure Of Uricase From Arthrobacter Globiformis
With Inhibitor 8-Azaxanthine
pdb|1VAY|C Chain C, Crystal Structure Of Uricase From Arthrobacter Globiformis
With Inhibitor 8-Azaxanthine
pdb|1VAY|D Chain D, Crystal Structure Of Uricase From Arthrobacter Globiformis
With Inhibitor 8-Azaxanthine
pdb|1VAY|E Chain E, Crystal Structure Of Uricase From Arthrobacter Globiformis
With Inhibitor 8-Azaxanthine
pdb|1VAY|F Chain F, Crystal Structure Of Uricase From Arthrobacter Globiformis
With Inhibitor 8-Azaxanthine
pdb|1VAY|G Chain G, Crystal Structure Of Uricase From Arthrobacter Globiformis
With Inhibitor 8-Azaxanthine
pdb|1VAY|H Chain H, Crystal Structure Of Uricase From Arthrobacter Globiformis
With Inhibitor 8-Azaxanthine
Length = 287
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 162/298 (54%), Gaps = 26/298 (8%)
Query: 11 EQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVY 70
+ ++GKA VR+ +V R+ RH + + NV+ L D A+ DN+ +VATDT KNTVY
Sbjct: 7 QNQYGKAEVRLVKVTRNT-ARHEIQDLNVTSQLRGDFEAAHTAGDNAHVVATDTQKNTVY 65
Query: 71 AKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGS 130
A A++ + EEF + L KHFT + VT + W+ ++ H+H F
Sbjct: 66 AFARDGF--ATTEEFLLRLGKHFTEGFDWVTGGRWAAQQFFWDRIND----HDHAFSRNK 119
Query: 131 ERHTTEVTVQESGTLQ-MTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTS 189
T V ++ SG+ Q + +GIEGL +LK+T S F GF RDKYT L +T +R+LAT+V++
Sbjct: 120 SEVRTAV-LEISGSEQAIVAGIEGLTVLKSTGSEFHGFPRDKYTTLQETTDRILATDVSA 178
Query: 190 TWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLG 249
WRY+ V F Y +V+ +L+ F +S ++Q T+Y+M +AV+
Sbjct: 179 RWRYNTVEV--------DFDAVYASVRGLLLKAF-----AETHSLALQQTMYEMGRAVIE 225
Query: 250 RFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRFWSK 307
+I + + +PN H V+L +D ++V+ D P+G IEA+ R S+
Sbjct: 226 THPEIDEIKMSLPNKHHFLVDLQPFGQDN----PNEVFYAADRPYGLIEATIQREGSR 279
>pdb|1J2G|A Chain A, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
pdb|1J2G|B Chain B, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
pdb|1J2G|C Chain C, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
pdb|1J2G|D Chain D, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
Length = 319
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 114/249 (45%), Gaps = 26/249 (10%)
Query: 30 GR-HFMVEWNVSISLLSDSII-AYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAI 87
GR H + NV IS+ ++ ++ DNS +VATD++KN + K ++E F
Sbjct: 39 GRDHILFGVNVKISVGGTKLLTSFTKGDNSLVVATDSMKNFI-QKHLASYTGTTIEGFLE 97
Query: 88 LLAKHFTSFYRQVTSAIVRIVEKPWECV----SVDGQLHEHGFKLGSERHTT---EVTVQ 140
+A F Y + + E P+E + + E FK + T +
Sbjct: 98 YVATSFLKKYSHIEKISLIGEEIPFETTFAVKNGNRAASELVFKKSRNEYATAYLNMVRN 157
Query: 141 ESGTLQMT---SGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRY-SYE 196
E TL +T SG+ GL L+K + + F GFIRD+YT LP+ R L + W+Y + E
Sbjct: 158 EDNTLNITEQQSGLAGLQLIKVSGNSFVGFIRDEYTTLPEDSNRPLFVYLNIKWKYKNTE 217
Query: 197 SVFNLPQKPLYFTERYLAVKKV--LMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDI 254
F P E Y+A +++ + + F + + S+Q +Y + + +L RF +
Sbjct: 218 DSFG--TNP----ENYVAAEQIRDIATSVFHETE----TLSIQHLIYLIGRRILERFPQL 267
Query: 255 SLVHLKMPN 263
V+ + N
Sbjct: 268 QEVYFESQN 276
>pdb|1EQQ|A Chain A, Single Stranded Dna Binding Protein And Ssdna Complex
pdb|1EQQ|B Chain B, Single Stranded Dna Binding Protein And Ssdna Complex
pdb|1EQQ|C Chain C, Single Stranded Dna Binding Protein And Ssdna Complex
pdb|1EQQ|D Chain D, Single Stranded Dna Binding Protein And Ssdna Complex
Length = 178
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 115 VSVDGQLHEHGF--KLGSERHTTEVTVQESGTLQMTSGIEG 153
V ++GQL + + G +R+TTEV V GT+QM G +G
Sbjct: 78 VYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118
>pdb|1QVC|A Chain A, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
pdb|1QVC|B Chain B, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
pdb|1QVC|C Chain C, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
pdb|1QVC|D Chain D, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
Length = 145
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 115 VSVDGQLHEHGF--KLGSERHTTEVTVQESGTLQMTSGIEG 153
V ++GQL + + G +R+TTEV V GT+QM G +G
Sbjct: 77 VYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 117
>pdb|1KAW|A Chain A, Structure Of Single Stranded Dna Binding Protein (Ssb)
pdb|1KAW|B Chain B, Structure Of Single Stranded Dna Binding Protein (Ssb)
pdb|1KAW|C Chain C, Structure Of Single Stranded Dna Binding Protein (Ssb)
pdb|1KAW|D Chain D, Structure Of Single Stranded Dna Binding Protein (Ssb)
Length = 135
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 115 VSVDGQLHEHGF--KLGSERHTTEVTVQESGTLQMTSGIEG 153
V ++GQL + + G +R+TTEV V GT+QM G +G
Sbjct: 77 VYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 117
>pdb|1EYG|A Chain A, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
Bound To Two 35-Mer Single Strand Dnas
pdb|1EYG|B Chain B, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
Bound To Two 35-Mer Single Strand Dnas
pdb|1EYG|C Chain C, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
Bound To Two 35-Mer Single Strand Dnas
pdb|1EYG|D Chain D, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
Bound To Two 35-Mer Single Strand Dnas
Length = 116
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 115 VSVDGQLHEHGF--KLGSERHTTEVTVQESGTLQMTSG 150
V ++GQL + + G +R+TTEV V GT+QM G
Sbjct: 78 VYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 115
>pdb|1SRU|A Chain A, Crystal Structure Of Full Length E. Coli Ssb Protein
pdb|1SRU|B Chain B, Crystal Structure Of Full Length E. Coli Ssb Protein
pdb|1SRU|C Chain C, Crystal Structure Of Full Length E. Coli Ssb Protein
pdb|1SRU|D Chain D, Crystal Structure Of Full Length E. Coli Ssb Protein
Length = 113
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 115 VSVDGQLHEHGF--KLGSERHTTEVTVQESGTLQM 147
V ++GQL + + G +R+TTEV V GT+QM
Sbjct: 78 VYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQM 112
>pdb|3PGZ|A Chain A, Crystal Structure Of A Single Strand Binding Protein (Ssb)
From Bartonella Henselae
pdb|3PGZ|B Chain B, Crystal Structure Of A Single Strand Binding Protein (Ssb)
From Bartonella Henselae
Length = 193
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 104 IVRIVE---KPWECVSVDGQLHEHGFK--LGSERHTTEVTVQE-SGTLQMTSG 150
+V++VE K + ++GQL ++ G++R+TTE+ +Q+ G LQM G
Sbjct: 85 LVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDG 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,903,917
Number of Sequences: 62578
Number of extensions: 348634
Number of successful extensions: 884
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 17
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)