Query 021738
Match_columns 308
No_of_seqs 124 out of 281
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02415 uricase 100.0 2E-124 4E-129 887.2 35.4 301 5-308 2-304 (304)
2 cd00445 Uricase Urate oxidase 100.0 3E-121 6E-126 860.4 34.5 283 13-303 1-286 (286)
3 TIGR03383 urate_oxi urate oxid 100.0 5E-120 1E-124 850.2 34.0 280 9-303 2-282 (282)
4 KOG1599 Uricase (urate oxidase 100.0 5E-100 1E-104 699.1 12.0 290 8-308 6-297 (297)
5 COG3648 Uricase (urate oxidase 100.0 1.1E-91 2.5E-96 644.4 24.6 283 11-304 12-298 (299)
6 PF01014 Uricase: Uricase; In 100.0 1.1E-36 2.4E-41 259.9 8.0 138 146-299 1-138 (138)
7 PF01014 Uricase: Uricase; In 100.0 1.6E-34 3.6E-39 246.5 8.8 128 11-139 1-138 (138)
8 cd00651 TFold Tunnelling fold 97.3 0.0029 6.3E-08 51.3 9.8 110 14-136 2-120 (122)
9 cd00651 TFold Tunnelling fold 96.4 0.008 1.7E-07 48.7 6.1 115 153-299 5-121 (122)
10 TIGR00525 folB dihydroneopteri 94.1 0.2 4.2E-06 41.3 6.7 71 36-107 26-96 (116)
11 TIGR00526 folB_dom FolB domain 93.0 0.36 7.7E-06 39.9 6.6 73 34-107 25-97 (118)
12 cd00534 DHNA_DHNTPE Dihydroneo 90.3 1 2.2E-05 37.1 6.5 72 35-107 26-97 (118)
13 PF02152 FolB: Dihydroneopteri 90.1 0.63 1.4E-05 37.8 5.0 75 33-108 21-95 (113)
14 PRK11245 folX D-erythro-7,8-di 89.4 1.3 2.7E-05 37.0 6.4 71 35-107 30-100 (120)
15 KOG1599 Uricase (urate oxidase 84.2 0.2 4.4E-06 47.8 -1.3 80 36-115 148-256 (297)
16 PRK11593 folB bifunctional dih 80.5 8.2 0.00018 31.9 7.2 69 37-107 28-96 (119)
17 COG1539 FolB Dihydroneopterin 76.5 12 0.00025 31.8 7.0 70 182-260 28-97 (121)
18 TIGR00525 folB dihydroneopteri 76.2 13 0.00029 30.4 7.2 70 183-261 27-96 (116)
19 cd00534 DHNA_DHNTPE Dihydroneo 68.8 23 0.0005 29.0 6.9 71 182-261 27-97 (118)
20 TIGR00526 folB_dom FolB domain 67.6 21 0.00045 29.3 6.5 48 205-261 50-97 (118)
21 COG1539 FolB Dihydroneopterin 65.3 35 0.00077 28.9 7.5 73 39-113 31-103 (121)
22 PF02152 FolB: Dihydroneopteri 61.2 20 0.00043 29.0 5.1 70 183-261 25-94 (113)
23 PF14998 Ripply: Transcription 51.5 20 0.00044 29.1 3.5 37 222-259 39-76 (87)
24 PRK11593 folB bifunctional dih 48.0 86 0.0019 25.8 6.9 69 182-260 27-95 (119)
25 PF00958 GMP_synt_C: GMP synth 42.9 40 0.00086 27.6 4.0 28 237-264 59-86 (93)
26 PF03485 Arg_tRNA_synt_N: Argi 38.2 67 0.0015 24.7 4.6 38 65-105 38-75 (85)
27 PF10360 DUF2433: Protein of u 36.7 72 0.0016 27.8 4.9 44 206-257 26-69 (132)
28 PF01514 YscJ_FliF: Secretory 34.5 1.1E+02 0.0024 27.9 6.1 64 54-140 96-159 (206)
29 PRK11245 folX D-erythro-7,8-di 34.3 1.4E+02 0.003 24.7 6.2 69 183-262 32-101 (120)
30 TIGR02544 III_secr_YscJ type I 34.2 96 0.0021 28.2 5.6 63 55-140 89-151 (193)
31 COG4331 Predicted membrane pro 26.5 53 0.0011 29.4 2.4 31 54-85 33-63 (167)
32 COG3277 GAR1 RNA-binding prote 25.7 42 0.0009 27.8 1.5 16 284-299 43-58 (98)
33 TIGR00039 6PTHBS 6-pyruvoyl te 24.5 4.1E+02 0.0089 22.1 7.8 73 34-111 28-113 (124)
34 PF01849 NAC: NAC domain; Int 23.6 35 0.00076 24.9 0.6 32 236-270 4-35 (58)
35 PF01106 NifU: NifU-like domai 20.2 1.1E+02 0.0024 23.1 2.8 27 232-258 39-66 (68)
No 1
>PLN02415 uricase
Probab=100.00 E-value=2e-124 Score=887.20 Aligned_cols=301 Identities=75% Similarity=1.144 Sum_probs=285.0
Q ss_pred ccccchhcccCCCceEEEEEEeCCCCceeEEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHH
Q 021738 5 LEGFNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEE 84 (308)
Q Consensus 5 ~~~~~~~~~YGK~~Vrv~rv~R~~~~~H~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~ 84 (308)
|+.+++.++|||++|||+||+|.+++.|+|+|+||+|+|+|||++|||+||||.||||||||||||++||+++++.+||+
T Consensus 2 ~~~~~~~~~YGK~~Vrv~rv~R~~~~~H~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNTVy~~Ak~~~~v~s~E~ 81 (304)
T PLN02415 2 ADGFLLEQRHGKARVRVGRVWRADGGIHHFVEWNVSISLLSDCLPAYVRDDNSDIVATDTIKNTVYVKAKECTQRLSVEE 81 (304)
T ss_pred CceeehhhccCccceEEEEEEecCCCceEEEEEEEEEEEeecchhheecCCCCccccccchHHHHHHHHHhcCCCCCHHH
Confidence 56778888999999999999994357999999999999999999999999999999999999999999999756999999
Q ss_pred HHHHHHHHHhccCCCeeEEEEEEEEeceeEeeeCCcccccccccCCceeEEEEEEecCCceEEEecccccEEEeecCCcc
Q 021738 85 FAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGF 164 (308)
Q Consensus 85 F~~~L~~hFl~~Y~hV~~~~v~i~e~~W~Ri~v~g~~H~HsF~~g~e~r~~~v~~~~~~~~~v~SGi~dL~vLKtTgS~F 164 (308)
||++||+|||++||||++|+|+|+|+||+||.++|+||+|||++|+|+|+|+|+++|+|.++|.|||+||+|||||||+|
T Consensus 82 Fa~~L~~HF~~~y~hV~~a~v~i~e~~W~Ri~v~G~pH~HsF~~g~e~r~~~v~~~~~~~~~v~SGi~dL~vLKtT~S~F 161 (304)
T PLN02415 82 FAILLAKHFTSTYPQVTTAIVSIEQKPWERVSIDGKPHDHGFKLGSEKHTAEVTVSKSGALDVTSGITGLSLLKTTQSGF 161 (304)
T ss_pred HHHHHHHHHhccCCCeEEEEEEEEEcceEEeccCCCcCCceeccCCceeEEEEEEeCCCceEEEecccceEEEeecCccc
Confidence 99999999999999999999999999999999999999999966889999999999998889999999999999999999
Q ss_pred cccccCCccCCCCCCCcceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHH
Q 021738 165 EGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMA 244 (308)
Q Consensus 165 ~GFirDeYTTLpEt~DRilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg 244 (308)
+||+||||||||||+||||||+|+|+|+|+ ..+++...+.||+++|++||++||++|||||++++||||||+|||+||
T Consensus 162 ~GF~rDeYTTLpet~DRilaT~v~a~W~y~--~~~~~~~~~~df~~~~~~vr~~ll~~Fag~~~~~~~S~SvQ~TlY~m~ 239 (304)
T PLN02415 162 EGFIRDKYTALPETRERILATEVTASWRYS--SVSSIPTKPLCYTEAYLDVKKVLADTFFGPPKSGVYSPSVQYTLYQMA 239 (304)
T ss_pred cccccCCcccCCCcccceEEEEEEEEEEEc--cccccccCccchHHHHHHHHHHHHHHhcCCcccCccCHHHHHHHHHHH
Confidence 999999999999999999999999999996 233455667899999999999999999999999999999999999999
Q ss_pred HHHHhhcCCeeEEEEECcCcceecccCCCCCCcccCCCCCeEEecCCCCCeeEEEEEecC--CCCC
Q 021738 245 KAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRF--WSKM 308 (308)
Q Consensus 245 ~~vL~~~P~v~eV~~~~PNkH~~~vdls~f~~~~~~~~~~eVf~p~d~P~G~I~atv~R~--~~kl 308 (308)
++||+++|||++|+|+|||||||+|||+||++ .+++|+||||+|+|+|||+|+|||+|+ .|||
T Consensus 240 ~~iL~~~P~i~~V~~~lPNkH~f~vdl~~~~~-~~l~n~~eVf~p~d~P~G~I~~tv~R~~~~~~~ 304 (304)
T PLN02415 240 KAVLNRFPDISSIQLNMPNLHFLPVNLPTKEN-SIVKFNDDVYLPTSEPHGSIEATVSRKTPTSKL 304 (304)
T ss_pred HHHHHhCCCceEEEEECCCcceEEEccccccc-ccCCCCCeEEccCCCCCccEEEEEECCCCCCCC
Confidence 99999999999999999999999999999863 348899999999999999999999999 7887
No 2
>cd00445 Uricase Urate oxidase (UO, uricase) is a peroxisomal enzyme that catalyzes the oxidation of uric acid to allantoin in most fish, amphibian, and mammalian species. The enzymatic process involves catalyzing the oxidative opening of the purine ring during the purine degradation pathway. In humans and certain other primates, however, the enzyme has been lost by some unknown mechanism. Each monomer contains two instances of this domain. Its functional form is a homotetramer for most species, though there are reports that some may form heterotetramers based on a few biochemical studies.
Probab=100.00 E-value=2.6e-121 Score=860.42 Aligned_cols=283 Identities=57% Similarity=0.869 Sum_probs=270.5
Q ss_pred ccCCCceEEEEEEeCCC--CceeEEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHHH
Q 021738 13 RHGKARVRVARVWRSKE--GRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLA 90 (308)
Q Consensus 13 ~YGK~~Vrv~rv~R~~~--~~H~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L~ 90 (308)
||||++|||+||+|+ + ++|+|+|+||+|+|+|||++|||+||||.||||||||||||++||++ ++.+||+||++||
T Consensus 1 ~YGK~~Vrv~rv~r~-~~~~~h~i~e~~V~v~L~Gd~~~syt~gDNs~vVaTDt~KNTvy~~Ak~~-~~~s~E~Fa~~L~ 78 (286)
T cd00445 1 TYGKDLVRVLRVWRD-GFGGVHEVVEVNVGVSLGGDFLTSYTEGDNSDIVATDTIKNTVYVLAKEY-GITSIEEFAIILA 78 (286)
T ss_pred CCCccceEEEEEEcC-CCCCceEEEEEEEEEEEeecchhhhhcCcCCccccccchHHHHHHHHHHC-CCCCHHHHHHHHH
Confidence 799999999999994 5 79999999999999999999999999999999999999999999997 5999999999999
Q ss_pred HHHhccCCCeeEEEEEEEEeceeEeeeCCccccccccc-CCceeEEEEEEecCCceEEEecccccEEEeecCCccccccc
Q 021738 91 KHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKL-GSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIR 169 (308)
Q Consensus 91 ~hFl~~Y~hV~~~~v~i~e~~W~Ri~v~g~~H~HsF~~-g~e~r~~~v~~~~~~~~~v~SGi~dL~vLKtTgS~F~GFir 169 (308)
+|||++||||++|+|+|+|+||+||.++|+||+|||++ |+|+|+|+|+++|++.++|.|||+||+|||||||+|+||+|
T Consensus 79 ~HF~~~y~hv~~a~v~i~e~~W~Ri~v~g~~H~HsF~~~g~e~r~~~v~~~r~~~~~v~SGi~dL~vLKsT~S~F~GF~r 158 (286)
T cd00445 79 THFLSKYSHVTGAHVNIEEKPWERVQQDGKPHDHAFIRTPTEKRTTEVIVVRSGILTVTSGIKGLSVLKTTQSGFEGFLR 158 (286)
T ss_pred HHHcccCCCeEEEEEEEEEcceEEeecCCCCCCcceeeCCCceEEEEEEEeCCCceEEEecccccEEEeecCcccccccc
Confidence 99999999999999999999999999999999999965 77999999999999889999999999999999999999999
Q ss_pred CCccCCCCCCCcceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHHHh
Q 021738 170 DKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLG 249 (308)
Q Consensus 170 DeYTTLpEt~DRilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~vL~ 249 (308)
|||||||||+||||||+|+|+|+|+..++. ...++||+++|++||+++|++||+||++|+||||||+|||+||++||+
T Consensus 159 DeYTTLpet~DRilaT~v~a~W~y~~~~~~--~~~~~df~~~~~~vr~~~l~~Fa~~~~~~~~S~SvQ~TlY~mg~~vL~ 236 (286)
T cd00445 159 DEYTTLPETRDRILATYVTASWRYSNTEDS--PAKSPDFDAAWEQVRDILLDTFAGPPDVGVYSPSVQHTLYLMAKQILD 236 (286)
T ss_pred CCcccCCCcccceEEEEEEEEEEECCcccc--cccccchHHHHHHHHHHHHHHhcCCcccCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999643322 334579999999999999999999999999999999999999999999
Q ss_pred hcCCeeEEEEECcCcceecccCCCCCCcccCCCCCeEEecCCCCCeeEEEEEec
Q 021738 250 RFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303 (308)
Q Consensus 250 ~~P~v~eV~~~~PNkH~~~vdls~f~~~~~~~~~~eVf~p~d~P~G~I~atv~R 303 (308)
++|||++|+|+|||||||+|||++|| ++|+||||+|+|+|||+|+|||+|
T Consensus 237 ~~P~i~~V~~~~PNkH~f~vdl~~~g----~~n~~eVf~p~d~P~G~I~~tv~R 286 (286)
T cd00445 237 RFPQISSVSFQMPNKHYFPIDLSIKG----LENNNEVYLPTDEPHGLIEATVTR 286 (286)
T ss_pred hCCCeeEEEEECCCcceEEEcCcccC----CCCCCeEEccCCCCceeEEEEEeC
Confidence 99999999999999999999999986 778999999999999999999998
No 3
>TIGR03383 urate_oxi urate oxidase. Members of this protein family are urate oxidase, also called uricase. This protein contains two copies of the domain described by the uricase model pfam01014. In animals, this enzyme has been lost from primates and birds.
Probab=100.00 E-value=5.3e-120 Score=850.21 Aligned_cols=280 Identities=52% Similarity=0.760 Sum_probs=267.0
Q ss_pred chhcccCCCceEEEEEEeCCCCceeEEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHH
Q 021738 9 NFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAIL 88 (308)
Q Consensus 9 ~~~~~YGK~~Vrv~rv~R~~~~~H~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~ 88 (308)
|.+++|||++|||+||+| +++.|+|+|+||+|+|+|||++|||+||||.||||||||||||++||++ ++.|||+||++
T Consensus 2 l~~~~YGK~~Vrv~rv~r-d~~~H~i~e~~V~v~L~Gd~~~syt~gDNs~vvaTDT~KNtvy~~Ak~~-~~~s~E~Fa~~ 79 (282)
T TIGR03383 2 LGQNRYGKANVRVLRVHR-DPLTHTIKELNVSVLLRGDFEASYTEGDNSDVVATDTQKNTVYALAKEH-GVTSIEEFAIA 79 (282)
T ss_pred CccccCCccceEEEEEEe-cCCceEEEEEEEEEEEeecchhhhhcCcCCccccccchHHHHHHHHHHC-CCCCHHHHHHH
Confidence 567899999999999999 5679999999999999999999999999999999999999999999997 59999999999
Q ss_pred HHHHHhccCCCeeEEEEEEEEeceeEeeeCCcccccccc-cCCceeEEEEEEecCCceEEEecccccEEEeecCCccccc
Q 021738 89 LAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFK-LGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGF 167 (308)
Q Consensus 89 L~~hFl~~Y~hV~~~~v~i~e~~W~Ri~v~g~~H~HsF~-~g~e~r~~~v~~~~~~~~~v~SGi~dL~vLKtTgS~F~GF 167 (308)
||+||+++||||++|+|+|+|+||+||.++|+||+|||+ .|+|+|+|+|+++|++.++|.|||+||+|||||||+|+||
T Consensus 80 l~~HF~~~y~~V~~a~v~i~e~~W~Ri~v~G~~H~HsF~~~g~e~r~~~v~~~~~~~~~v~SGi~dL~vLKtT~S~F~gF 159 (282)
T TIGR03383 80 LAKHFLDTYSHVTGARVEIEEYPWERIEVDGKPHDHSFVRSGGETRTAEVTVDRGGNIQITSGIKDLTVLKTTGSGFVGF 159 (282)
T ss_pred HHHHHcccCCCeEEEEEEEEEcceEEeecCCCCCCcceeecCCceEEEEEEEeCCCceEEEecccccEEEeecCcccccc
Confidence 999999999999999999999999999999999999995 4789999999999998899999999999999999999999
Q ss_pred ccCCccCCCCCCCcceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHH
Q 021738 168 IRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAV 247 (308)
Q Consensus 168 irDeYTTLpEt~DRilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~v 247 (308)
+||||||||||+||||||+|+|+|+|+... ...+.||+++|++||+++|++| +++||||||+|||+||++|
T Consensus 160 ~rDeYTTLpet~DRilaT~v~a~W~y~~~~----~~~~~df~~~~~~vr~~~l~~F-----a~~~S~SvQ~TlY~mg~~v 230 (282)
T TIGR03383 160 IRDEYTTLPETTDRILATDVTARWRYNNFL----DATGVDFDAAYEQVRDILLDTF-----AETYSPSVQNTLYLMGKAV 230 (282)
T ss_pred ccCCcccCCCcccceEEEEEEEEEEECCcc----cccccChHHHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999996421 1235789999999999999999 5889999999999999999
Q ss_pred HhhcCCeeEEEEECcCcceecccCCCCCCcccCCCCCeEEecCCCCCeeEEEEEec
Q 021738 248 LGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303 (308)
Q Consensus 248 L~~~P~v~eV~~~~PNkH~~~vdls~f~~~~~~~~~~eVf~p~d~P~G~I~atv~R 303 (308)
|+++|||++|+|+|||||||+|||++|| ++|+||||+|+|+|||+|+|||+|
T Consensus 231 L~~~P~i~~V~~~~PNkH~f~vdl~~~g----l~n~~eVf~p~d~P~G~I~~tv~R 282 (282)
T TIGR03383 231 LERFPEVEEVSLSMPNKHYFLVDLSPFG----LKNNGEVYYPADEPYGLIEATVTR 282 (282)
T ss_pred HHhCCCeEEEEEECCCcceEEecCcccC----CCCCCeEEccCCCCCeeeEEEEeC
Confidence 9999999999999999999999999986 788999999999999999999998
No 4
>KOG1599 consensus Uricase (urate oxidase) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-100 Score=699.09 Aligned_cols=290 Identities=44% Similarity=0.626 Sum_probs=276.0
Q ss_pred cchhcccCCCceEEEEEEeCCCCceeEEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHH
Q 021738 8 FNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAI 87 (308)
Q Consensus 8 ~~~~~~YGK~~Vrv~rv~R~~~~~H~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~ 87 (308)
+..+..|||+.|||+||+|. +..|+|.||+|+.+|.|..+.||+.||||+||||||||||||++||++ ++.+||.||+
T Consensus 6 ~~~q~d~gk~~vrv~~v~r~-~~~h~~~e~~v~~~l~~~~~~sy~~~dnsdivatdtqkntvyv~ak~~-g~~spe~fa~ 83 (297)
T KOG1599|consen 6 YVKQCDYGKTLVRVMKVDRC-PKTHTVYEMDVQSLLTGELEESYTKADNSDIVATDTQKNTVYVFAKNN-GVSSPEVFAA 83 (297)
T ss_pred cceeccccceeeEEEEEecC-CCcceEEEEehhHHHHHhhhhhhhccCCCceeecccccceEEEEeccc-CCCCHHHHHH
Confidence 34456789999999999994 559999999999999999999999999999999999999999999997 5999999999
Q ss_pred HHHHHHhccCCCeeEEEEEEEEeceeEeeeCCcccccccccCCceeEEEEEEe-cCCceEEEecccccEEEeecCCcccc
Q 021738 88 LLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQ-ESGTLQMTSGIEGLALLKTTKSGFEG 166 (308)
Q Consensus 88 ~L~~hFl~~Y~hV~~~~v~i~e~~W~Ri~v~g~~H~HsF~~g~e~r~~~v~~~-~~~~~~v~SGi~dL~vLKtTgS~F~G 166 (308)
.||+||+++|+||++|.|+|+++||+|+.+||+||.|||++++|.|+|++... .+|...|.|||+||.|||||||+|++
T Consensus 84 llakhf~~ky~hv~~a~v~i~~~pw~rvsidgkph~h~fi~~~et~~te~~~v~~~gal~V~sgik~l~VLKTTqSgFe~ 163 (297)
T KOG1599|consen 84 LLAKHFVDKYKHVHGAAVDITITPWTRVSIDGKPHSHSFIRNGETRTTEVVMVEAGGALVVGSGIKDLSVLKTTQSGFEN 163 (297)
T ss_pred HHHHHHhhhcchhhheeEEEEeccceEEEecCcccccceeecccceeeeeeeEeccCceeeeeccceeEEEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999955 56678899999999999999999999
Q ss_pred cccCCccCCCCCCCcceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHH
Q 021738 167 FIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKA 246 (308)
Q Consensus 167 FirDeYTTLpEt~DRilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~ 246 (308)
|++||||+|||+.||||+|.|+|+|+|+.. ..+||...|..++.+++++|||||+.|+||+|||.|||.|+..
T Consensus 164 FhkDeftiLPe~tdRi~stvvd~sw~ys~t-------eGLdf~~~y~~vk~i~ie~fag~pd~gvyseSVQ~TLy~m~~s 236 (297)
T KOG1599|consen 164 FHKDEFTILPEDTDRIFSTVVDCSWTYSET-------EGLDFKLHYGDVKLISIETFAGDPDTGVYSESVQVTLYLMFLS 236 (297)
T ss_pred eecCccccCcchhhhhheeeeeeeeecccc-------cccchHHHhccceeEEEeeccCCcccccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999843 3689999999999999999999999999999999999999999
Q ss_pred HHhhcCCeeEEEEECcCcceecccCCCCCCcccCCCCCeEEecCCCCCeeEEEEEecC-CCCC
Q 021738 247 VLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRF-WSKM 308 (308)
Q Consensus 247 vL~~~P~v~eV~~~~PNkH~~~vdls~f~~~~~~~~~~eVf~p~d~P~G~I~atv~R~-~~kl 308 (308)
+|.++|+|++|.++|||||||+|||++|.+ ++++++|||+|+|+|||.|+|||.|| .|||
T Consensus 237 sln~vp~isvi~~~mPNkHyf~vnls~~~~--~l~~~~eV~lP~d~PhG~I~atvaRki~s~l 297 (297)
T KOG1599|consen 237 SLNRVPAISVIMEELPNKHYFNVNLSPFAI--NLGLNKEVYLPADYPHGYITATVARKITSKL 297 (297)
T ss_pred HHhhchhHHHHHHhCCccceeeccchhhhc--cccccceeeeeccCCCceEEEEeeehhhccC
Confidence 999999999999999999999999999975 37789999999999999999999999 8887
No 5
>COG3648 Uricase (urate oxidase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-91 Score=644.43 Aligned_cols=283 Identities=36% Similarity=0.522 Sum_probs=264.7
Q ss_pred hcccCCCceEEEEEEeCCC-CceeEEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHH
Q 021738 11 EQRHGKARVRVARVWRSKE-GRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILL 89 (308)
Q Consensus 11 ~~~YGK~~Vrv~rv~R~~~-~~H~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L 89 (308)
-+-|||..|++++|.|-+. ..|+|+|+.|+|+|.|+|++|||+||||.||||||||||||++||.+ .+++||+|+..|
T Consensus 12 v~aYgk~lv~lmkik~~pesr~htv~emdv~~al~G~f~~S~TdgDNtlvVaTDtmKNtIy~~ak~~-~~St~E~F~~~l 90 (299)
T COG3648 12 VFAYGKALVPLMKIKRIPESRTHTVREMDVRVALYGAFLASFTDGDNTLVVATDTMKNTIYRLAKEG-FGSTIEEFLKEL 90 (299)
T ss_pred eeecccccchhhccccCCCCCcceEEEeeEEEEecccchhhhccCCcceEEecchhHHHHHHHHHhc-CCCcHHHHHHHH
Confidence 4679999999999999322 25999999999999999999999999999999999999999999995 799999999999
Q ss_pred HHHHhccCCCeeEEEEEEEEeceeEeeeCCcccccc--cccC-CceeEEEEEEecCCceEEEecccccEEEeecCCcccc
Q 021738 90 AKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHG--FKLG-SERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEG 166 (308)
Q Consensus 90 ~~hFl~~Y~hV~~~~v~i~e~~W~Ri~v~g~~H~Hs--F~~g-~e~r~~~v~~~~~~~~~v~SGi~dL~vLKtTgS~F~G 166 (308)
++|||++|+||+++.++++++||+||++.++||.|. |++. +++|++.|+..+++...+.|||+||.|||+|||||+|
T Consensus 91 akhFvdty~hi~g~~l~~t~~pwerm~~~~~pqthdl~F~r~~~er~~a~ve~~~g~~fev~S~i~dl~vlK~tgsgf~n 170 (299)
T COG3648 91 AKHFVDTYSHITGGFLEGTEHPWERMPTPAQPQTHDLAFVRQMPERRTARVETQRGRRFEVTSGIEDLYVLKVTGSGFEN 170 (299)
T ss_pred HHHHhhhcCccceeeecccccchhhccCCCCCCccceeeeecCCCCcceEEEEecCCceEEeeccceEEEEEecCcccee
Confidence 999999999999999999999999999999886655 9775 5888999999999889999999999999999999999
Q ss_pred cccCCccCCCCCCCcceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHH
Q 021738 167 FIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKA 246 (308)
Q Consensus 167 FirDeYTTLpEt~DRilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~ 246 (308)
||+||||||||+.||||+|+++|.|.|.+.++. .+.+|.||+++|++|+++++.+| +++||||||+|||+||++
T Consensus 171 fi~dEfTTLPE~~dR~l~t~ln~~w~yen~~d~-~a~~~~dy~a~~EqV~~ia~~tF-----~e~~spSiQ~tlY~mg~~ 244 (299)
T COG3648 171 FILDEFTTLPETHDRPLFTYLNAKWEYENFDDF-EAVEPCDYVAAWEQVYRIAQTTF-----HEHYSPSIQNTLYLMGER 244 (299)
T ss_pred eehhhcccCcccCCcceEEEEeeEEEeecCccc-cccCccchHHHHHHHHHHHHHHH-----HhccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999876543 34557899999999999999999 689999999999999999
Q ss_pred HHhhcCCeeEEEEECcCcceecccCCCCCCcccCCCCCeEEecCCCCCeeEEEEEecC
Q 021738 247 VLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRF 304 (308)
Q Consensus 247 vL~~~P~v~eV~~~~PNkH~~~vdls~f~~~~~~~~~~eVf~p~d~P~G~I~atv~R~ 304 (308)
||.+||||.+|+|.|||||++.++|.+|+ ++|.++||.|...|||+|+|||.|.
T Consensus 245 il~~~Pqi~ev~fq~pNkh~~e~nl~~f~----~dn~gkvy~~~~~PyGf~~~tvtRe 298 (299)
T COG3648 245 ILSRFPQISEVSFQSPNKHTWETNLVEFG----LDNNGKVYTEPRPPYGFQEFTVTRE 298 (299)
T ss_pred HHHhCcchheeeeeCCCcceEEEeeeecc----cccCCccccCCCCCCcceeEEEEcc
Confidence 99999999999999999999999999997 6677899999999999999999996
No 6
>PF01014 Uricase: Uricase; InterPro: IPR002042 Uricase (1.7.3.3 from EC) (urate oxidase) [] is the peroxisomal enzyme responsible for the degradation of urate into allantoin: Urate + O2 + H2O = 5-hydroxyisourate + H2O2 Some species, like primates and birds, have lost the gene for uricase and are therefore unable to degrade urate []. Uricase is a protein of 300 to 400 amino acids, its sequence is well conserved. It is mainly localised in the liver, where it forms a large electron-dense paracrystalline core in many peroxisomes []. The enzyme exists as a tetramer of identical subunits, each containing a possible type 2 copper-binding site []. In legumes, 2 forms of uricase are found: in the roots, the tetrameric form; and, in the uninfected cells of root nodules, a monomeric form, which plays an important role in nitrogen-fixation [].; PDB: 1XY3_D 2FUB_A 3OBP_A 3LD4_A 3PK3_A 2IC0_A 3PLG_A 2PES_A 1XXJ_C 3CKU_A ....
Probab=100.00 E-value=1.1e-36 Score=259.93 Aligned_cols=138 Identities=35% Similarity=0.528 Sum_probs=118.6
Q ss_pred EEEecccccEEEeecCCcccccccCCccCCCCCCCcceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCC
Q 021738 146 QMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFG 225 (308)
Q Consensus 146 ~v~SGi~dL~vLKtTgS~F~GFirDeYTTLpEt~DRilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~ 225 (308)
++.||++||+|||+| ||||||| .||||+|.|++.|+|+..... ......+|+++|..+++.++++||+
T Consensus 1 ~~~~Gk~~v~vlKtt----------~~ttlpe-~dri~~~~V~~~~~~~~~~~~-~~~dn~~~~~v~td~~kn~v~~fA~ 68 (138)
T PF01014_consen 1 QNRYGKKDVRVLKTT----------RYTTLPE-HDRIFETNVDVSWTGDFASSY-TEGDNSDFDAVATDTRKNTVYAFAK 68 (138)
T ss_dssp EEEEEEEEEEEEEES----------TTTTTTB-SSEEEEEEEEEEEEECCHHHH-HSCSGCCHHHHHHHHHHHHHHHHHH
T ss_pred CcccCcCCEEEEEEE----------ecCCCCC-CcEEEEEEEEEEEEEeccccc-ccCCCCceeehHHHHHHHHHHHHhc
Confidence 468999999999999 9999999 999999999999999532211 1122468999999999999999998
Q ss_pred CCCCCccChhHHHHHHHHHHHHHhhcCCeeEEEEECcCcceecccCCCCCCcccCCCCCeEEecCCCCCeeEEE
Q 021738 226 PPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEA 299 (308)
Q Consensus 226 ~~~a~~~S~SVQ~TlY~mg~~vL~~~P~v~eV~~~~PNkH~~~vdls~f~~~~~~~~~~eVf~p~d~P~G~I~a 299 (308)
+++ ||+|+|+|||.||+.+|+++|+|++|+++|||+||++|||+++|.. +..++++||.|+++|+|+|+|
T Consensus 69 ~~~---~s~Svq~~~~~~~~~~L~~~p~V~~v~~~~~n~~w~~v~~~~~G~~-~~~~~~~v~~~~~~p~g~I~~ 138 (138)
T PF01014_consen 69 PHD---YSPSVQQFLYLMGKHFLDRYPQVSEVRVSMPNKHWFRVDLSKFGLD-NPHNHAFVFTPTEKPTGLIEA 138 (138)
T ss_dssp HSH----BSSHHHHHHHHHHHHHHH-TTEEEEEEEEEEEEEEEEECEETTEE-ECECSEEEEEEEESCEEEEEE
T ss_pred ccC---CCCCHHHHHHHHHHHHHhhCCCeEEEEEEEEeccceecccCCCCcc-CCCCCCeeECCCCCceEEEeC
Confidence 744 8999999999999999999999999999999999999999997621 122678999999999999997
No 7
>PF01014 Uricase: Uricase; InterPro: IPR002042 Uricase (1.7.3.3 from EC) (urate oxidase) [] is the peroxisomal enzyme responsible for the degradation of urate into allantoin: Urate + O2 + H2O = 5-hydroxyisourate + H2O2 Some species, like primates and birds, have lost the gene for uricase and are therefore unable to degrade urate []. Uricase is a protein of 300 to 400 amino acids, its sequence is well conserved. It is mainly localised in the liver, where it forms a large electron-dense paracrystalline core in many peroxisomes []. The enzyme exists as a tetramer of identical subunits, each containing a possible type 2 copper-binding site []. In legumes, 2 forms of uricase are found: in the roots, the tetrameric form; and, in the uninfected cells of root nodules, a monomeric form, which plays an important role in nitrogen-fixation [].; PDB: 1XY3_D 2FUB_A 3OBP_A 3LD4_A 3PK3_A 2IC0_A 3PLG_A 2PES_A 1XXJ_C 3CKU_A ....
Probab=100.00 E-value=1.6e-34 Score=246.54 Aligned_cols=128 Identities=39% Similarity=0.491 Sum_probs=116.9
Q ss_pred hcccCCCceEEEEEEeCCCC---ceeEEEEEEEEEEeeCccccccccCCCce--ecCcchHHHHHHHHHhcCCCCCHHHH
Q 021738 11 EQRHGKARVRVARVWRSKEG---RHFMVEWNVSISLLSDSIIAYVDDDNSDI--VATDTIKNTVYAKAKECKEQLSVEEF 85 (308)
Q Consensus 11 ~~~YGK~~Vrv~rv~R~~~~---~H~i~e~~V~v~L~Gd~~~syt~gDNs~V--VaTDT~KNtVy~~Ak~~~~~~s~E~F 85 (308)
+++|||++|||+|++|. +. .|.|++++|+++|+|+++++|+.|||+.+ ||||+||||||++||++....|+|+|
T Consensus 1 ~~~~Gk~~v~vlKtt~~-ttlpe~dri~~~~V~~~~~~~~~~~~~~~dn~~~~~v~td~~kn~v~~fA~~~~~s~Svq~~ 79 (138)
T PF01014_consen 1 QNRYGKKDVRVLKTTRY-TTLPEHDRIFETNVDVSWTGDFASSYTEGDNSDFDAVATDTRKNTVYAFAKPHDYSPSVQQF 79 (138)
T ss_dssp EEEEEEEEEEEEEESTT-TTTTBSSEEEEEEEEEEEEECCHHHHHSCSGCCHHHHHHHHHHHHHHHHHHHSH-BSSHHHH
T ss_pred CcccCcCCEEEEEEEec-CCCCCCcEEEEEEEEEEEEEecccccccCCCCceeehHHHHHHHHHHHHhcccCCCCCHHHH
Confidence 36899999999999994 44 89999999999999999999999999999 99999999999999985228999999
Q ss_pred HHHHHHHHhccCCCeeEEEEEEEEeceeE--eeeCC--ccccccccc-CCceeEEEEEE
Q 021738 86 AILLAKHFTSFYRQVTSAIVRIVEKPWEC--VSVDG--QLHEHGFKL-GSERHTTEVTV 139 (308)
Q Consensus 86 ~~~L~~hFl~~Y~hV~~~~v~i~e~~W~R--i~v~g--~~H~HsF~~-g~e~r~~~v~~ 139 (308)
+..||+|||++||||++|++.+++++|.| +..+| +||+|+|+. +.+.|++.|++
T Consensus 80 ~~~~~~~~L~~~p~V~~v~~~~~n~~w~~v~~~~~G~~~~~~~~~v~~~~~~p~g~I~~ 138 (138)
T PF01014_consen 80 LYLMGKHFLDRYPQVSEVRVSMPNKHWFRVDLSKFGLDNPHNHAFVFTPTEKPTGLIEA 138 (138)
T ss_dssp HHHHHHHHHHH-TTEEEEEEEEEEEEEEEEECEETTEEECECSEEEEEEEESCEEEEEE
T ss_pred HHHHHHHHHhhCCCeEEEEEEEEeccceecccCCCCccCCCCCCeeECCCCCceEEEeC
Confidence 99999999999999999999999999999 77899 789999976 55889998874
No 8
>cd00651 TFold Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl tetrahydropterin synthetase (PTPS), and uricase (UO,uroate/urate oxidase). They bind to substrates belonging to the purine or pterin families, and share a fold-related binding site with a glutamate or glutamine residue anchoring the substrate and a lot of conserved interactions. They also share a similar oligomerization mode: several T-folds join together to form a beta(2n)alpha(n) barrel, then two barrels join together in a head-to-head fashion to made up the native enzymes. The functional enzyme is a tetramer for UO, a hexamer for PTPS, an octamer for DHNA/DHNTPE and a decamer for GTPCH-1. The substrate is located in a deep and narrow pocket at the interface between monomers. In PTPS, the active site is located at the interface of thr
Probab=97.27 E-value=0.0029 Score=51.28 Aligned_cols=110 Identities=34% Similarity=0.306 Sum_probs=76.1
Q ss_pred cCCCceE-EEEEEeCC-----CCceeEEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCC-CCHHHHH
Q 021738 14 HGKARVR-VARVWRSK-----EGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQ-LSVEEFA 86 (308)
Q Consensus 14 YGK~~Vr-v~rv~R~~-----~~~H~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~-~s~E~F~ 86 (308)
||+ .++ |....+.+ ...+..++++|++.+.++.... +.-++++..+|+|+..+++.... ..+|.++
T Consensus 2 ~~i-~i~~l~~~~~~G~~~~e~~~~q~~~v~v~~~~~~~~~~~------~d~l~~~i~y~~v~~~i~~~~~~~~l~E~la 74 (122)
T cd00651 2 DGV-RVKDLLKVTRLGFVTLERTVGQIFEVDVTLSWDGKKAAA------SDDVATDTVYNTIYRLAKEYVEGSQLIERLA 74 (122)
T ss_pred CEE-EEEeeEEEEEECCCHHHHhcCCEEEEEEEEEecCchhhc------cCchhhhCCHHHHHHHHHHHHcccCCHHHHH
Confidence 566 677 77777732 2356799999999988876433 22588899999999998875211 4567777
Q ss_pred HHHHHHHhccCC-CeeEEEEEEEEeceeEeeeCCccccccccc-CCceeEEE
Q 021738 87 ILLAKHFTSFYR-QVTSAIVRIVEKPWECVSVDGQLHEHGFKL-GSERHTTE 136 (308)
Q Consensus 87 ~~L~~hFl~~Y~-hV~~~~v~i~e~~W~Ri~v~g~~H~HsF~~-g~e~r~~~ 136 (308)
..++...+..|+ .+. .|.+...+|.++..+| |.|.. ++..++++
T Consensus 75 e~i~~~i~~~~~~~~~--~v~v~v~k~~~~~~~~----~~~~~~~~~~~~~~ 120 (122)
T cd00651 75 EEIAYLIAEHFLSSVA--EVKVEEKKPHAVIPDR----GVFKPTDSPGVTIE 120 (122)
T ss_pred HHHHHHHHHhcccCce--EEEEEEeCCCCCCCcc----cccccCCcEEEEEE
Confidence 777777777766 554 5667778999888777 77754 44545543
No 9
>cd00651 TFold Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl tetrahydropterin synthetase (PTPS), and uricase (UO,uroate/urate oxidase). They bind to substrates belonging to the purine or pterin families, and share a fold-related binding site with a glutamate or glutamine residue anchoring the substrate and a lot of conserved interactions. They also share a similar oligomerization mode: several T-folds join together to form a beta(2n)alpha(n) barrel, then two barrels join together in a head-to-head fashion to made up the native enzymes. The functional enzyme is a tetramer for UO, a hexamer for PTPS, an octamer for DHNA/DHNTPE and a decamer for GTPCH-1. The substrate is located in a deep and narrow pocket at the interface between monomers. In PTPS, the active site is located at the interface of thr
Probab=96.45 E-value=0.008 Score=48.72 Aligned_cols=115 Identities=21% Similarity=0.289 Sum_probs=68.6
Q ss_pred ccE-EEeecCCcccccccCCccCCCCCCCcceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCc
Q 021738 153 GLA-LLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGV 231 (308)
Q Consensus 153 dL~-vLKtTgS~F~GFirDeYTTLpEt~DRilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~ 231 (308)
.+. |.+.+.+|+. +......+++.+.|++.|.+..+.....-....+++..++.+.+...+.
T Consensus 5 ~i~~l~~~~~~G~~--------~~e~~~~q~~~v~v~~~~~~~~~~~~d~l~~~i~y~~v~~~i~~~~~~~--------- 67 (122)
T cd00651 5 RVKDLLKVTRLGFV--------TLERTVGQIFEVDVTLSWDGKKAAASDDVATDTVYNTIYRLAKEYVEGS--------- 67 (122)
T ss_pred EEEeeEEEEEECCC--------HHHHhcCCEEEEEEEEEecCchhhccCchhhhCCHHHHHHHHHHHHccc---------
Confidence 455 6667766665 5555778999999999999964321111111234444444444433221
Q ss_pred cChhHHHHHHHHHHHHHhhcC-CeeEEEEECcCcceecccCCCCCCcccCCCCCeEEecCCCCCeeEEE
Q 021738 232 YSASVQSTLYQMAKAVLGRFH-DISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEA 299 (308)
Q Consensus 232 ~S~SVQ~TlY~mg~~vL~~~P-~v~eV~~~~PNkH~~~vdls~f~~~~~~~~~~eVf~p~d~P~G~I~a 299 (308)
..+-.+.-+++..|++.++ .+ .++++++++|..+... .+||.+.+.|.+.|+-
T Consensus 68 --~l~E~lae~i~~~i~~~~~~~~--~~v~v~v~k~~~~~~~-----------~~~~~~~~~~~~~~~~ 121 (122)
T cd00651 68 --QLIERLAEEIAYLIAEHFLSSV--AEVKVEEKKPHAVIPD-----------RGVFKPTDSPGVTIER 121 (122)
T ss_pred --CCHHHHHHHHHHHHHHhcccCc--eEEEEEEeCCCCCCCc-----------ccccccCCcEEEEEEE
Confidence 3333344555566666666 44 4566777887665532 2688899888888763
No 10
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=94.05 E-value=0.2 Score=41.33 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=55.6
Q ss_pred EEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeeEEEEEE
Q 021738 36 EWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRI 107 (308)
Q Consensus 36 e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L~~hFl~~Y~hV~~~~v~i 107 (308)
-+.|++.|.-++..+....|-...|-=.++-+.|..+++.. ....+|.+|..+|+..+..||+|..++|.+
T Consensus 26 ~~~idv~l~~~~~~a~~~D~l~~tidY~~v~~~i~~~~~~~-~~~llE~la~~Ia~~i~~~~~~v~~v~v~i 96 (116)
T TIGR00525 26 RFVVDLELSVDETKAAESDDLGDTVNYAELYSAIEEIVAEK-PRDLIETVAYRIADRLFADFPQVQRVKVRV 96 (116)
T ss_pred EEEEEEEEEEcChhhhccCCchhccCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHHCCCceEEEEEE
Confidence 35555556666666666656566666667788888888874 479999999999999999999999999998
No 11
>TIGR00526 folB_dom FolB domain. Two paralogous genes of E. coli, folB (dihydroneopterin aldolase) and folX (d-erythro-7,8-dihydroneopterin triphosphate epimerase) are homologous to each other and homo-octameric. In Pneumocystis carinii, a multifunctional enzyme of folate synthesis has an N-terminal region active as dihydroneopterin aldolase. This region consists of two tandem sequences each homologous to folB and forms tetramers.
Probab=92.97 E-value=0.36 Score=39.90 Aligned_cols=73 Identities=21% Similarity=0.144 Sum_probs=54.8
Q ss_pred EEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeeEEEEEE
Q 021738 34 MVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRI 107 (308)
Q Consensus 34 i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L~~hFl~~Y~hV~~~~v~i 107 (308)
-..+.|++.|..++..+...-|=+..|-=+.+-+.|..++... ....+|.+|..|++.-+..||.|..++|.+
T Consensus 25 ~Q~v~vdv~l~~~~~~a~~~Ddl~~ti~Y~~l~~~i~~~~~~~-~~~llE~la~~ia~~i~~~~~~v~~v~v~v 97 (118)
T TIGR00526 25 PQKVVVDLTLGYDASKAANSDDLSDSLNYAEIASNITKFVEEN-PFKLIETLAKSVSEVVLDDYQKVTEVELEV 97 (118)
T ss_pred CCeEEEEEEEeeCchHhhccCCHHHccCHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 4456667777777765544322244455566778888887764 478999999999999999999999999999
No 12
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=90.26 E-value=1 Score=37.09 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=50.7
Q ss_pred EEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeeEEEEEE
Q 021738 35 VEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRI 107 (308)
Q Consensus 35 ~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L~~hFl~~Y~hV~~~~v~i 107 (308)
.-+.|++.+.-++..+-..-|=+..|-=++.-+.|..++... ...++|.+|..|++..+..|++|..++|.+
T Consensus 26 Q~~~idv~~~~~~~~a~~~D~l~~tidY~~l~~~i~~~~~~~-~~~llE~La~~ia~~i~~~~~~v~~v~v~v 97 (118)
T cd00534 26 QKFVVDLTLWYDLSKAGESDDLADTLNYAEVAKLIKKIVEGS-PFKLIETLAEEIADILLEDYPKVSAIKVKV 97 (118)
T ss_pred CeEEEEEEEEeCchhhhccCChhhccCHHHHHHHHHHHHhCC-CHhHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 345666666666654433322223344455666666666653 478999999999999999999999999998
No 13
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=90.08 E-value=0.63 Score=37.80 Aligned_cols=75 Identities=19% Similarity=0.115 Sum_probs=59.7
Q ss_pred eEEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeeEEEEEEE
Q 021738 33 FMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIV 108 (308)
Q Consensus 33 ~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L~~hFl~~Y~hV~~~~v~i~ 108 (308)
.-..+.|++.|.-++..+-...|=...|-=+..-+.|..++... ....+|.+|..|+...+..||.|..++|.++
T Consensus 21 ~~Q~v~id~~l~~~~~~a~~~D~l~~tvdY~~l~~~i~~~~~~~-~f~llE~la~~i~~~i~~~~~~v~~v~v~v~ 95 (113)
T PF02152_consen 21 RPQPVVIDLELEYDFSKAGSSDDLDDTVDYAELAEAIRELVENS-HFNLLETLAERIADRILKEFPQVQSVTVKVR 95 (113)
T ss_dssp SEEEEEEEEEEEEEHHHHHHHTTGGGSSHHHHHHHHHHHHHHSS-EESSHHHHHHHHHHHHHHHTTTESEEEEEEE
T ss_pred cCCEEEEEEEEEechhHhccccccccccCHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHhCCCccEEEEEEE
Confidence 45566777777777766665545456677777888888888874 5799999999999999999999999999993
No 14
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=89.35 E-value=1.3 Score=37.03 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=54.9
Q ss_pred EEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeeEEEEEE
Q 021738 35 VEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRI 107 (308)
Q Consensus 35 ~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L~~hFl~~Y~hV~~~~v~i 107 (308)
..+.|++.|.-|+..+....|=+.-|-=..+-+.|..+++.. ....+|.+|..|++-.+. ++.+..++|.+
T Consensus 30 Q~~~vdl~l~~d~~~a~~sDdl~~tidY~~v~~~i~~~v~~~-~~~llE~la~~Ia~~i~~-~~~v~~v~v~v 100 (120)
T PRK11245 30 QDVVINVTIHYPADKARTSDDIDDALNYRTITKNIIQHVENN-RFSLLEKLTQDVLDIARE-HPWVTYAEVEI 100 (120)
T ss_pred CeEEEEEEEecCchhhccccCHHHhcCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHc-cCCccEEEEEE
Confidence 345566666777776666666666666677888888888764 478999999999996665 89999999998
No 15
>KOG1599 consensus Uricase (urate oxidase) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.15 E-value=0.2 Score=47.77 Aligned_cols=80 Identities=18% Similarity=0.077 Sum_probs=60.7
Q ss_pred EEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhc--------------CC---------------CCCHHHHH
Q 021738 36 EWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKEC--------------KE---------------QLSVEEFA 86 (308)
Q Consensus 36 e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~--------------~~---------------~~s~E~F~ 86 (308)
+-.+.|+++-..--.+..+||..++|+|+.||+.-.+++.+ +. +...|.|.
T Consensus 148 ik~l~VLKTTqSgFe~FhkDeftiLPe~tdRi~stvvd~sw~ys~teGLdf~~~y~~vk~i~ie~fag~pd~gvyseSVQ 227 (297)
T KOG1599|consen 148 IKDLSVLKTTQSGFENFHKDEFTILPEDTDRIFSTVVDCSWTYSETEGLDFKLHYGDVKLISIETFAGDPDTGVYSESVQ 227 (297)
T ss_pred cceeEEEEeccccccceecCccccCcchhhhhheeeeeeeeecccccccchHHHhccceeEEEeeccCCcccccccHHHH
Confidence 34455666655566788999999999999999965554433 11 12267888
Q ss_pred HHHHHHHhccCCCeeEEEEEEEEeceeEe
Q 021738 87 ILLAKHFTSFYRQVTSAIVRIVEKPWECV 115 (308)
Q Consensus 87 ~~L~~hFl~~Y~hV~~~~v~i~e~~W~Ri 115 (308)
.-|+.||+....++-.+.+-.++.||.-.
T Consensus 228 ~TLy~m~~ssln~vp~isvi~~~mPNkHy 256 (297)
T KOG1599|consen 228 VTLYLMFLSSLNRVPAISVIMEELPNKHY 256 (297)
T ss_pred HHHHHHHHHHHhhchhHHHHHHhCCccce
Confidence 88999999999999999999999999744
No 16
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=80.50 E-value=8.2 Score=31.91 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=46.5
Q ss_pred EEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeeEEEEEE
Q 021738 37 WNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRI 107 (308)
Q Consensus 37 ~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L~~hFl~~Y~hV~~~~v~i 107 (308)
+.|++.|.-|+..+-...|=...|-=..+-+.|..+++.. ....+|.+|..|++.-+..|+ +..++|.|
T Consensus 28 ~~vdl~l~~d~~~a~~~Ddl~~tidY~~v~~~I~~~~~~~-~~~LlE~la~~ia~~i~~~~~-~~~v~v~v 96 (119)
T PRK11593 28 LVFDIEMAWDNRKAAKSDDVADCLSYADIAETVISHVEGA-RFALVERVAEEVAELLLARFN-SPWVRIKL 96 (119)
T ss_pred EEEEEEEEecccccccccCHhhccCHHHHHHHHHHHHhCC-CcccHHHHHHHHHHHHHhhCC-CcEEEEEE
Confidence 4445555555544433333344444455666667777764 478999999999999999986 58888887
No 17
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=76.54 E-value=12 Score=31.82 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=47.5
Q ss_pred ceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHHHhhcCCeeEEEEE
Q 021738 182 MLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLK 260 (308)
Q Consensus 182 ilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~vL~~~P~v~eV~~~ 260 (308)
.|..+++..|....+.-.+.-...++|...++.+++.+-...+ .-+-.....+++.+++++|.+..++++
T Consensus 28 ~~~Vdl~l~~d~~~A~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~---------~LiE~lA~~ia~~l~~~~~~v~~~~v~ 97 (121)
T COG1539 28 KFVVDLTLGYDLRKAAESDDLADTLNYAEVSELIKEIVEGKRF---------ALIETLAEEIADLLLARFPRVELVEVK 97 (121)
T ss_pred eEEEEEEEeccchhhcCccchhheecHHHHHHHHHHHHhCCcc---------chHHHHHHHHHHHHHhhCCccEEEEEE
Confidence 3677788888774321111112236888888888887665442 456677899999999999999877554
No 18
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=76.23 E-value=13 Score=30.41 Aligned_cols=70 Identities=10% Similarity=0.256 Sum_probs=41.4
Q ss_pred eeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHHHhhcCCeeEEEEEC
Q 021738 183 LATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKM 261 (308)
Q Consensus 183 lsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~vL~~~P~v~eV~~~~ 261 (308)
+..++.+.|....+...+.-.+.+||...++.+++.+-. ..-..+=...-.+++.+|..+|++..|++.+
T Consensus 27 ~~idv~l~~~~~~a~~~D~l~~tidY~~v~~~i~~~~~~---------~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i 96 (116)
T TIGR00525 27 FVVDLELSVDETKAAESDDLGDTVNYAELYSAIEEIVAE---------KPRDLIETVAYRIADRLFADFPQVQRVKVRV 96 (116)
T ss_pred EEEEEEEEEcChhhhccCCchhccCHHHHHHHHHHHHhC---------CChhHHHHHHHHHHHHHHHHCCCceEEEEEE
Confidence 556666666543221111112235666666666655432 1124556677889999999999888887765
No 19
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=68.78 E-value=23 Score=29.01 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=42.5
Q ss_pred ceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHHHhhcCCeeEEEEEC
Q 021738 182 MLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKM 261 (308)
Q Consensus 182 ilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~vL~~~P~v~eV~~~~ 261 (308)
.+..++...|....+...+.-...+||...++.+++.+-+ ..-.++=...-.+++.+|..+|++..|++.+
T Consensus 27 ~~~idv~~~~~~~~a~~~D~l~~tidY~~l~~~i~~~~~~---------~~~~llE~La~~ia~~i~~~~~~v~~v~v~v 97 (118)
T cd00534 27 KFVVDLTLWYDLSKAGESDDLADTLNYAEVAKLIKKIVEG---------SPFKLIETLAEEIADILLEDYPKVSAIKVKV 97 (118)
T ss_pred eEEEEEEEEeCchhhhccCChhhccCHHHHHHHHHHHHhC---------CCHhHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 3666777777665322111111235777766666665332 1124555566778888998989998887765
No 20
>TIGR00526 folB_dom FolB domain. Two paralogous genes of E. coli, folB (dihydroneopterin aldolase) and folX (d-erythro-7,8-dihydroneopterin triphosphate epimerase) are homologous to each other and homo-octameric. In Pneumocystis carinii, a multifunctional enzyme of folate synthesis has an N-terminal region active as dihydroneopterin aldolase. This region consists of two tandem sequences each homologous to folB and forms tetramers.
Probab=67.58 E-value=21 Score=29.32 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=33.0
Q ss_pred CcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHHHhhcCCeeEEEEEC
Q 021738 205 PLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKM 261 (308)
Q Consensus 205 ~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~vL~~~P~v~eV~~~~ 261 (308)
.+||...++.+++.+-.. .-..+=.....+++.+|..+|.+..|++..
T Consensus 50 ti~Y~~l~~~i~~~~~~~---------~~~llE~la~~ia~~i~~~~~~v~~v~v~v 97 (118)
T TIGR00526 50 SLNYAEIASNITKFVEEN---------PFKLIETLAKSVSEVVLDDYQKVTEVELEV 97 (118)
T ss_pred ccCHHHHHHHHHHHHhCC---------CcchHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 356777777777665321 124455567788999999999998877764
No 21
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=65.31 E-value=35 Score=28.88 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=44.8
Q ss_pred EEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeeEEEEEEEEecee
Q 021738 39 VSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWE 113 (308)
Q Consensus 39 V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L~~hFl~~Y~hV~~~~v~i~e~~W~ 113 (308)
|++-|.=|+..+=..-|.+.-|-=..+==.|-.+.... ...-+|..|..||..-++.||+|+.++|.+ ..||.
T Consensus 31 Vdl~l~~d~~~A~~~Ddl~dtl~Y~~v~~~i~~~v~~~-~~~LiE~lA~~ia~~l~~~~~~v~~~~v~v-~KP~a 103 (121)
T COG1539 31 VDLTLGYDLRKAAESDDLADTLNYAEVSELIKEIVEGK-RFALIETLAEEIADLLLARFPRVELVEVKV-TKPKA 103 (121)
T ss_pred EEEEEeccchhhcCccchhheecHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHHHhhCCccEEEEEEE-ECCCC
Confidence 44444444433333334433333222222333344442 579999999999999999999999999998 34443
No 22
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=61.15 E-value=20 Score=28.96 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=43.6
Q ss_pred eeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHHHhhcCCeeEEEEEC
Q 021738 183 LATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKM 261 (308)
Q Consensus 183 lsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~vL~~~P~v~eV~~~~ 261 (308)
+..++.+.+....+...+.-...+||...++.+++.+-+.= =..+-.....+++.+++.+|++..|++.+
T Consensus 25 v~id~~l~~~~~~a~~~D~l~~tvdY~~l~~~i~~~~~~~~---------f~llE~la~~i~~~i~~~~~~v~~v~v~v 94 (113)
T PF02152_consen 25 VVIDLELEYDFSKAGSSDDLDDTVDYAELAEAIRELVENSH---------FNLLETLAERIADRILKEFPQVQSVTVKV 94 (113)
T ss_dssp EEEEEEEEEEHHHHHHHTTGGGSSHHHHHHHHHHHHHHSSE---------ESSHHHHHHHHHHHHHHHTTTESEEEEEE
T ss_pred EEEEEEEEechhHhccccccccccCHHHHHHHHHHHHhcCC---------cccHHHHHHHHHHHHHHhCCCccEEEEEE
Confidence 45556665555322110111224677777777766544311 25566778899999999999999988775
No 23
>PF14998 Ripply: Transcription Regulator
Probab=51.49 E-value=20 Score=29.07 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=28.2
Q ss_pred hcCCCCCCCccChh-HHHHHHHHHHHHHhhcCCeeEEEE
Q 021738 222 TFFGPPKEGVYSAS-VQSTLYQMAKAVLGRFHDISLVHL 259 (308)
Q Consensus 222 ~Fa~~~~a~~~S~S-VQ~TlY~mg~~vL~~~P~v~eV~~ 259 (308)
.|-||-. -.-..| .|.=||+.|+.+|+.||-=+.|.|
T Consensus 39 ~FqHPVR-L~wPkSk~~dYLy~~gE~lL~nFPVQATI~f 76 (87)
T PF14998_consen 39 GFQHPVR-LYWPKSKCYDYLYSEGEKLLANFPVQATIHF 76 (87)
T ss_pred ccCCceE-eeccchHHHHHHHHHHHHHHHcCCceeEEEe
Confidence 3555422 223566 788999999999999999999976
No 24
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=47.98 E-value=86 Score=25.79 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=38.5
Q ss_pred ceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHHHhhcCCeeEEEEE
Q 021738 182 MLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLK 260 (308)
Q Consensus 182 ilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~vL~~~P~v~eV~~~ 260 (308)
.+..+++..|....+...+.-...+||...++.+++.+-+. .-..+=.....+++.+|+.+|. ..|+++
T Consensus 27 ~~~vdl~l~~d~~~a~~~Ddl~~tidY~~v~~~I~~~~~~~---------~~~LlE~la~~ia~~i~~~~~~-~~v~v~ 95 (119)
T PRK11593 27 KLVFDIEMAWDNRKAAKSDDVADCLSYADIAETVISHVEGA---------RFALVERVAEEVAELLLARFNS-PWVRIK 95 (119)
T ss_pred EEEEEEEEEecccccccccCHhhccCHHHHHHHHHHHHhCC---------CcccHHHHHHHHHHHHHhhCCC-cEEEEE
Confidence 35666767665543211111112357777766666654321 1245556677888899988874 555544
No 25
>PF00958 GMP_synt_C: GMP synthase C terminal domain domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations []. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains [].; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process; PDB: 2VXO_A 2YWC_D 2YWB_D 2DPL_B 3A4I_A 3UOW_B 3TQI_D 1GPM_C.
Probab=42.90 E-value=40 Score=27.60 Aligned_cols=28 Identities=7% Similarity=0.110 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhcCCeeEEEEECcCc
Q 021738 237 QSTLYQMAKAVLGRFHDISLVHLKMPNI 264 (308)
Q Consensus 237 Q~TlY~mg~~vL~~~P~v~eV~~~~PNk 264 (308)
..+|-.|+.+|+..+|+|..|-|.+-+|
T Consensus 59 ~~~L~~is~~I~n~v~~V~RV~yDiT~K 86 (93)
T PF00958_consen 59 WELLEEISSRITNEVPGVNRVVYDITSK 86 (93)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEE---B
T ss_pred HHHHHHHHHHHHHcCCCccEEEEeccCC
Confidence 3588899999999999999999988766
No 26
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=38.22 E-value=67 Score=24.67 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeeEEEE
Q 021738 65 IKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIV 105 (308)
Q Consensus 65 ~KNtVy~~Ak~~~~~~s~E~F~~~L~~hFl~~Y~hV~~~~v 105 (308)
+=|....+||.. ..+|+++|..|+.++-...- |..+.|
T Consensus 38 ~~n~a~~lak~~--k~~P~~iA~~i~~~l~~~~~-i~~vev 75 (85)
T PF03485_consen 38 QTNIAFRLAKKL--KKNPREIAEEIAEKLEKSPI-IEKVEV 75 (85)
T ss_dssp EEEHHHHHHHHT--TS-HHHHHHHHHHCHCTTTT-EEEEEE
T ss_pred eccchHHHHHHc--CCCHHHHHHHHHHhcCCCCC-EEEEEE
Confidence 446778999995 58999999999999987644 776654
No 27
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=36.73 E-value=72 Score=27.77 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=36.6
Q ss_pred cchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHHHhhcCCeeEE
Q 021738 206 LYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLV 257 (308)
Q Consensus 206 ~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~vL~~~P~v~eV 257 (308)
..|.++|+.||.-+-.... .-..|.+|=..|-.|++++|.+..-
T Consensus 26 ~~F~~vW~~VK~~ve~~i~--------~~~~q~~LL~~AL~v~~kiP~~~~~ 69 (132)
T PF10360_consen 26 ASFGEVWETVKGQVEEAID--------PNEAQRNLLENALSVFDKIPISANG 69 (132)
T ss_pred HHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHhCCCCCCC
Confidence 4699999999998877662 3457999999999999999987654
No 28
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=34.48 E-value=1.1e+02 Score=27.90 Aligned_cols=64 Identities=23% Similarity=0.214 Sum_probs=38.9
Q ss_pred cCCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeeEEEEEEEEeceeEeeeCCcccccccccCCcee
Q 021738 54 DDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERH 133 (308)
Q Consensus 54 gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L~~hFl~~Y~hV~~~~v~i~e~~W~Ri~v~g~~H~HsF~~g~e~r 133 (308)
-||+....||.+++.-|..|.+ + .|++.. .+.+.|..|+|++ .. |-.-.|....+..
T Consensus 96 ~~~~~~~~T~~~~~~~~~~ale-~----------eL~~tI-~~i~gV~~A~V~l--------~~---Pe~~~f~~~~~~~ 152 (206)
T PF01514_consen 96 FDNSSFGTTDFEEKVNYQRALE-G----------ELERTI-ESIDGVESARVHL--------VL---PERSVFGENQQPP 152 (206)
T ss_dssp TTT-S---SHHHHHHHHHHHHH-H----------HHHHHH-TTSTTEEEEEEEE--------EE-------BTTB----E
T ss_pred hccCCCCCCHHHHHHHHHHHHH-H----------HHHHHH-HcCCCeeEEEEEE--------ec---CCccccccCCCCC
Confidence 3689999999999999999998 3 355543 6779999999998 33 2334555444445
Q ss_pred EEEEEEe
Q 021738 134 TTEVTVQ 140 (308)
Q Consensus 134 ~~~v~~~ 140 (308)
+|.|.+.
T Consensus 153 sASV~l~ 159 (206)
T PF01514_consen 153 SASVVLK 159 (206)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 6666665
No 29
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=34.30 E-value=1.4e+02 Score=24.70 Aligned_cols=69 Identities=4% Similarity=0.033 Sum_probs=35.8
Q ss_pred eeEEEEEEEEEecccc-ccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHHHhhcCCeeEEEEEC
Q 021738 183 LATEVTSTWRYSYESV-FNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKM 261 (308)
Q Consensus 183 lsT~v~a~W~y~~~~~-~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg~~vL~~~P~v~eV~~~~ 261 (308)
+-.++...|....+.. +.+ ...+||...++.+.+.+... .-..+=...-.+++.+|+ .|.+..|++..
T Consensus 32 ~~vdl~l~~d~~~a~~sDdl-~~tidY~~v~~~i~~~v~~~---------~~~llE~la~~Ia~~i~~-~~~v~~v~v~v 100 (120)
T PRK11245 32 VVINVTIHYPADKARTSDDI-DDALNYRTITKNIIQHVENN---------RFSLLEKLTQDVLDIARE-HPWVTYAEVEI 100 (120)
T ss_pred EEEEEEEecCchhhccccCH-HHhcCHHHHHHHHHHHHhcC---------CcchHHHHHHHHHHHHHc-cCCccEEEEEE
Confidence 5556666665543211 111 11356666666665554321 123444455566776665 68888777765
Q ss_pred c
Q 021738 262 P 262 (308)
Q Consensus 262 P 262 (308)
.
T Consensus 101 ~ 101 (120)
T PRK11245 101 D 101 (120)
T ss_pred E
Confidence 3
No 30
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=34.22 E-value=96 Score=28.17 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=45.9
Q ss_pred CCCceecCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeeEEEEEEEEeceeEeeeCCcccccccccCCceeE
Q 021738 55 DNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHT 134 (308)
Q Consensus 55 DNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F~~~L~~hFl~~Y~hV~~~~v~i~e~~W~Ri~v~g~~H~HsF~~g~e~r~ 134 (308)
||+....||.+++.-|..|.+ + .|++. +.+.+.|..|+|++ .. |..-.|....+..+
T Consensus 89 ~~~~lg~T~~~e~~~~~~ale-~----------EL~rt-I~~i~~V~~ArVhl--------~~---P~~~~f~~~~~~~s 145 (193)
T TIGR02544 89 PKDGLVSSPQEERARYLYAIE-Q----------RLEQT-LSQIDGVISARVHV--------VL---PENDNNGRPKKPSS 145 (193)
T ss_pred cCCCCcCCHHHHHHHHHHHHH-H----------HHHHH-HHhcCCeeeeEEEE--------EC---CCCCcccccCCCCc
Confidence 677799999999999999998 4 34444 45679999999999 33 33346665555567
Q ss_pred EEEEEe
Q 021738 135 TEVTVQ 140 (308)
Q Consensus 135 ~~v~~~ 140 (308)
|.|.+.
T Consensus 146 ASV~l~ 151 (193)
T TIGR02544 146 ASVFIK 151 (193)
T ss_pred EEEEEE
Confidence 777766
No 31
>COG4331 Predicted membrane protein [Function unknown]
Probab=26.48 E-value=53 Score=29.36 Aligned_cols=31 Identities=16% Similarity=-0.024 Sum_probs=21.3
Q ss_pred cCCCceecCcchHHHHHHHHHhcCCCCCHHHH
Q 021738 54 DDNSDIVATDTIKNTVYAKAKECKEQLSVEEF 85 (308)
Q Consensus 54 gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F 85 (308)
|==---|++|..|||+..+++.. ...+|-++
T Consensus 33 Gill~Fv~~d~i~~~i~~ltq~e-~~e~~~di 63 (167)
T COG4331 33 GILLIFVPPDLIKATIHHLTQAE-LLEDPSDI 63 (167)
T ss_pred hHheeeeCHHHHHHHHHHHHHHH-HhCCHHHH
Confidence 33334589999999999999863 34444433
No 32
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=25.71 E-value=42 Score=27.80 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.9
Q ss_pred CeEEecCCCCCeeEEE
Q 021738 284 DDVYLPTDEPHGSIEA 299 (308)
Q Consensus 284 ~eVf~p~d~P~G~I~a 299 (308)
.+||=|.++||++|.+
T Consensus 43 ~dVfGPv~~PY~~Vkp 58 (98)
T COG3277 43 VDVFGPVDEPYILVKP 58 (98)
T ss_pred EEEEccCCCCEEEEec
Confidence 5799999999999998
No 33
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=24.54 E-value=4.1e+02 Score=22.05 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=50.4
Q ss_pred EEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHh-c-----------CCCCCHHHHHHHHHHHHhccC-CCe
Q 021738 34 MVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKE-C-----------KEQLSVEEFAILLAKHFTSFY-RQV 100 (308)
Q Consensus 34 i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~-~-----------~~~~s~E~F~~~L~~hFl~~Y-~hV 100 (308)
-.-|.|.|.|+|+. ..+|..|+--.-.|+.+-.+-++ . ....|.|..|..+....-... +.+
T Consensus 28 GH~y~v~v~v~g~~-----~~~~G~viDf~~lk~~~~~~~~~~lDH~~Ln~~~~~~~~pT~Enia~~i~~~l~~~l~~~~ 102 (124)
T TIGR00039 28 GHSYKVDVEVSGER-----DPKTGMVMDFSDLKKIVKEVIDEPLDHKLLNDDVNYLENPTSENVAVYIFDNLKEYLIPVE 102 (124)
T ss_pred CCcEEEEEEEEEee-----CCCceEEEEHHHHHHHHHHHhccCCCCceeccCCCCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 34578888888863 45788999998899888765333 1 123588999999988776663 455
Q ss_pred eEEEEEEEEec
Q 021738 101 TSAIVRIVEKP 111 (308)
Q Consensus 101 ~~~~v~i~e~~ 111 (308)
.-++|.+-|.|
T Consensus 103 ~~~~V~v~Et~ 113 (124)
T TIGR00039 103 NLVKVKEEETP 113 (124)
T ss_pred eEEEEEEEECC
Confidence 55666665543
No 34
>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation. The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.
Probab=23.59 E-value=35 Score=24.92 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhcCCeeEEEEECcCcceeccc
Q 021738 236 VQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVN 270 (308)
Q Consensus 236 VQ~TlY~mg~~vL~~~P~v~eV~~~~PNkH~~~vd 270 (308)
+|..|=+||. ..+|.|.+|.|..++..-|.++
T Consensus 4 ~~~~l~klgl---~~i~~i~eV~i~~~dg~~~~~~ 35 (58)
T PF01849_consen 4 LQKMLKKLGL---KEIPGIEEVTIRKDDGTVFVFN 35 (58)
T ss_dssp ----GHHCT----EEETTEEEEEEEETTTEEEEEE
T ss_pred HHHHHHHcCC---cccCCcEEEEEEECCceEEEEc
Confidence 5667777776 9999999999999998877776
No 35
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=20.20 E-value=1.1e+02 Score=23.13 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=21.6
Q ss_pred cChhHHHHH-HHHHHHHHhhcCCeeEEE
Q 021738 232 YSASVQSTL-YQMAKAVLGRFHDISLVH 258 (308)
Q Consensus 232 ~S~SVQ~Tl-Y~mg~~vL~~~P~v~eV~ 258 (308)
..||...|| ..+.+.+.+++|++.+|.
T Consensus 39 gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~ 66 (68)
T PF01106_consen 39 GCPSSDMTLKQGIEQALREAVPEVKRVV 66 (68)
T ss_dssp SSCCHHHHHHHHHHHHHHHHSTT-SEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCceEE
Confidence 467888888 888888899999998874
Done!