Query 021739
Match_columns 308
No_of_seqs 230 out of 1949
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 3.6E-65 7.7E-70 450.3 27.7 304 1-304 58-362 (363)
2 PLN02979 glycolate oxidase 100.0 6.7E-60 1.5E-64 435.8 31.1 308 1-308 59-366 (366)
3 PLN02493 probable peroxisomal 100.0 1.4E-59 3.1E-64 437.2 31.1 308 1-308 60-367 (367)
4 cd04736 MDH_FMN Mandelate dehy 100.0 1.7E-56 3.7E-61 416.3 30.9 288 1-291 54-360 (361)
5 PF01070 FMN_dh: FMN-dependent 100.0 1.4E-56 3.1E-61 419.8 29.8 295 1-295 48-355 (356)
6 PRK11197 lldD L-lactate dehydr 100.0 2.1E-56 4.6E-61 418.3 30.5 296 1-297 60-377 (381)
7 PLN02535 glycolate oxidase 100.0 2.6E-56 5.6E-61 416.0 30.7 296 1-299 62-357 (364)
8 TIGR02708 L_lactate_ox L-lacta 100.0 4.1E-56 8.9E-61 414.6 30.9 292 1-299 70-362 (367)
9 cd03332 LMO_FMN L-Lactate 2-mo 100.0 5.8E-55 1.3E-59 409.4 30.9 293 1-294 75-382 (383)
10 cd04737 LOX_like_FMN L-Lactate 100.0 1E-54 2.2E-59 404.8 30.4 289 1-295 62-351 (351)
11 cd02922 FCB2_FMN Flavocytochro 100.0 2E-52 4.4E-57 389.4 32.6 285 1-292 54-343 (344)
12 COG1304 idi Isopentenyl diphos 100.0 9.3E-47 2E-51 351.4 22.8 296 1-300 54-353 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 6.2E-44 1.3E-48 329.0 30.9 246 1-292 54-299 (299)
14 PRK05437 isopentenyl pyrophosp 100.0 2E-35 4.3E-40 277.2 25.3 259 1-300 50-341 (352)
15 cd02811 IDI-2_FMN Isopentenyl- 100.0 1.1E-34 2.5E-39 269.9 25.6 247 1-292 42-326 (326)
16 TIGR02151 IPP_isom_2 isopenten 100.0 8.2E-35 1.8E-39 271.6 24.4 258 1-299 43-333 (333)
17 PRK10415 tRNA-dihydrouridine s 100.0 6.2E-28 1.4E-32 224.3 20.5 252 4-297 2-286 (321)
18 COG0042 tRNA-dihydrouridine sy 100.0 9.7E-28 2.1E-32 222.5 20.4 255 5-300 4-290 (323)
19 PRK10550 tRNA-dihydrouridine s 100.0 1.2E-26 2.7E-31 214.4 21.0 244 12-297 1-280 (312)
20 TIGR01037 pyrD_sub1_fam dihydr 99.9 7.6E-26 1.6E-30 208.9 23.4 237 1-293 1-298 (300)
21 TIGR00742 yjbN tRNA dihydrouri 99.9 4.2E-26 9.1E-31 211.2 20.1 242 12-297 1-281 (318)
22 TIGR00737 nifR3_yhdG putative 99.9 1.8E-25 3.9E-30 208.1 23.0 247 6-294 2-281 (319)
23 cd02808 GltS_FMN Glutamate syn 99.9 5.2E-25 1.1E-29 209.7 23.7 262 9-297 75-391 (392)
24 PRK05458 guanosine 5'-monophos 99.9 1.9E-24 4.1E-29 199.4 24.9 237 1-297 27-315 (326)
25 PF01207 Dus: Dihydrouridine s 99.9 9.2E-26 2E-30 208.8 15.3 243 15-299 1-276 (309)
26 TIGR01306 GMP_reduct_2 guanosi 99.9 7.8E-24 1.7E-28 194.5 24.1 237 1-297 24-312 (321)
27 PRK07259 dihydroorotate dehydr 99.9 1.1E-23 2.4E-28 194.6 24.0 238 1-293 2-298 (301)
28 PRK11815 tRNA-dihydrouridine s 99.9 6.6E-24 1.4E-28 198.3 22.4 245 9-297 8-291 (333)
29 cd04740 DHOD_1B_like Dihydroor 99.9 3E-23 6.4E-28 191.3 25.4 237 2-293 1-295 (296)
30 cd04739 DHOD_like Dihydroorota 99.9 3.6E-23 7.9E-28 192.8 25.8 238 1-293 2-302 (325)
31 PRK07565 dihydroorotate dehydr 99.9 4E-23 8.6E-28 193.4 21.8 239 1-294 3-305 (334)
32 cd02940 DHPD_FMN Dihydropyrimi 99.9 1.7E-22 3.7E-27 186.4 21.4 213 1-254 2-286 (299)
33 COG0167 PyrD Dihydroorotate de 99.9 3.4E-22 7.4E-27 182.5 22.2 242 1-295 2-308 (310)
34 PLN02495 oxidoreductase, actin 99.9 5E-22 1.1E-26 187.3 22.3 247 1-295 11-337 (385)
35 TIGR01305 GMP_reduct_1 guanosi 99.9 1.3E-21 2.8E-26 178.6 24.2 236 1-293 30-329 (343)
36 PRK08649 inosine 5-monophospha 99.9 1.1E-21 2.4E-26 184.4 24.0 269 1-297 37-367 (368)
37 PRK08318 dihydropyrimidine deh 99.9 7.2E-22 1.6E-26 190.4 22.5 245 1-295 4-320 (420)
38 cd00381 IMPDH IMPDH: The catal 99.9 2.1E-21 4.5E-26 180.8 23.6 238 1-295 23-321 (325)
39 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 1.2E-21 2.7E-26 183.7 20.4 268 3-296 36-368 (369)
40 PRK02506 dihydroorotate dehydr 99.9 8.4E-21 1.8E-25 175.7 21.9 240 1-293 2-306 (310)
41 PF01645 Glu_synthase: Conserv 99.9 1.2E-20 2.7E-25 176.2 19.5 250 9-285 63-368 (368)
42 cd04741 DHOD_1A_like Dihydroor 99.9 3.1E-20 6.7E-25 170.9 21.8 223 3-279 1-294 (294)
43 PF00478 IMPDH: IMP dehydrogen 99.9 4.7E-20 1E-24 171.2 21.9 232 6-294 32-336 (352)
44 cd02801 DUS_like_FMN Dihydrour 99.9 2.2E-20 4.7E-25 165.9 18.3 201 13-255 1-219 (231)
45 PRK05286 dihydroorotate dehydr 99.9 5.2E-20 1.1E-24 172.9 21.5 227 1-283 49-344 (344)
46 cd02911 arch_FMN Archeal FMN-b 99.9 1.6E-20 3.5E-25 167.0 17.2 188 13-251 1-222 (233)
47 KOG2335 tRNA-dihydrouridine sy 99.9 2E-20 4.4E-25 170.8 18.0 207 6-254 12-238 (358)
48 PLN02826 dihydroorotate dehydr 99.9 1.9E-19 4.2E-24 171.4 24.9 123 164-294 261-407 (409)
49 PRK06843 inosine 5-monophospha 99.8 3.4E-19 7.3E-24 168.5 24.3 142 152-293 180-381 (404)
50 PRK05096 guanosine 5'-monophos 99.8 2.4E-19 5.3E-24 163.6 22.2 229 9-293 44-330 (346)
51 cd02810 DHOD_DHPD_FMN Dihydroo 99.8 2.6E-19 5.7E-24 164.5 21.2 207 3-254 1-277 (289)
52 cd04738 DHOD_2_like Dihydrooro 99.8 2.5E-18 5.5E-23 160.5 20.9 218 1-274 39-326 (327)
53 TIGR00736 nifR3_rel_arch TIM-b 99.8 2.5E-18 5.4E-23 151.8 15.7 153 63-255 68-226 (231)
54 COG0069 GltB Glutamate synthas 99.8 1.8E-17 3.8E-22 158.2 20.2 260 9-295 164-478 (485)
55 PRK07107 inosine 5-monophospha 99.8 7.5E-18 1.6E-22 164.6 17.6 140 154-293 271-472 (502)
56 PF01180 DHO_dh: Dihydroorotat 99.8 4.9E-18 1.1E-22 156.5 15.1 224 1-279 2-295 (295)
57 TIGR01036 pyrD_sub2 dihydrooro 99.8 4.3E-17 9.2E-22 152.4 19.5 106 149-254 187-322 (335)
58 PTZ00314 inosine-5'-monophosph 99.7 2.2E-16 4.8E-21 154.4 19.9 144 149-292 265-466 (495)
59 TIGR01303 IMP_DH_rel_1 IMP deh 99.7 1.4E-16 3E-21 154.9 17.5 144 150-293 250-456 (475)
60 PRK11750 gltB glutamate syntha 99.7 4E-16 8.7E-21 164.3 20.7 256 11-292 858-1167(1485)
61 TIGR01302 IMP_dehydrog inosine 99.7 2.5E-16 5.5E-21 152.9 17.7 142 151-292 250-450 (450)
62 PLN02274 inosine-5'-monophosph 99.7 2.7E-16 5.9E-21 153.9 17.8 143 149-293 272-473 (505)
63 PRK05567 inosine 5'-monophosph 99.7 7.6E-16 1.7E-20 151.0 18.7 141 153-293 256-455 (486)
64 TIGR03151 enACPred_II putative 99.7 9.8E-15 2.1E-19 135.0 22.3 183 4-256 6-197 (307)
65 KOG2333 Uncharacterized conser 99.7 3.8E-15 8.1E-20 139.9 17.7 206 10-255 263-496 (614)
66 PRK07807 inosine 5-monophospha 99.6 1.6E-14 3.5E-19 140.6 17.4 141 153-293 255-458 (479)
67 KOG1436 Dihydroorotate dehydro 99.6 4.5E-14 9.7E-19 126.6 18.1 122 165-294 252-397 (398)
68 PF03060 NMO: Nitronate monoox 99.6 2E-13 4.4E-18 127.7 21.0 186 5-255 7-225 (330)
69 PRK13523 NADPH dehydrogenase N 99.6 9.2E-14 2E-18 130.1 17.0 226 3-255 7-311 (337)
70 cd04730 NPD_like 2-Nitropropan 99.6 1.3E-12 2.8E-17 116.4 22.5 187 11-262 2-198 (236)
71 KOG2550 IMP dehydrogenase/GMP 99.5 1E-13 2.2E-18 128.2 11.5 145 149-293 275-476 (503)
72 cd02803 OYE_like_FMN_family Ol 99.5 1.1E-12 2.3E-17 122.6 18.2 227 3-255 4-317 (327)
73 cd04734 OYE_like_3_FMN Old yel 99.5 4.6E-12 1E-16 119.1 20.4 225 3-255 5-321 (343)
74 cd02932 OYE_YqiM_FMN Old yello 99.4 1.1E-11 2.4E-16 116.3 19.5 227 3-255 5-326 (336)
75 cd04733 OYE_like_2_FMN Old yel 99.4 2.2E-11 4.7E-16 114.4 19.2 150 80-255 153-328 (338)
76 cd02933 OYE_like_FMN Old yello 99.4 4.4E-11 9.6E-16 112.2 21.1 148 80-255 156-320 (338)
77 cd04735 OYE_like_4_FMN Old yel 99.4 1.5E-11 3.2E-16 116.2 17.8 107 149-255 193-319 (353)
78 cd02931 ER_like_FMN Enoate red 99.4 2.8E-11 6.1E-16 115.4 18.7 105 149-255 200-341 (382)
79 cd04747 OYE_like_5_FMN Old yel 99.4 4.1E-11 8.8E-16 113.1 19.1 226 3-255 5-334 (361)
80 cd04722 TIM_phosphate_binding 99.4 5.9E-11 1.3E-15 101.4 18.5 185 14-250 1-200 (200)
81 cd04742 NPD_FabD 2-Nitropropan 99.4 1.1E-10 2.4E-15 111.2 20.7 216 10-255 12-254 (418)
82 COG2070 Dioxygenases related t 99.3 4.1E-11 8.8E-16 112.0 17.0 98 155-256 118-220 (336)
83 cd04743 NPD_PKS 2-Nitropropane 99.3 1.6E-10 3.4E-15 106.7 19.9 181 11-255 2-208 (320)
84 PRK08255 salicylyl-CoA 5-hydro 99.3 2.4E-10 5.3E-15 118.1 21.5 104 150-255 601-723 (765)
85 cd02930 DCR_FMN 2,4-dienoyl-Co 99.3 2E-10 4.4E-15 108.5 17.2 227 3-255 5-312 (353)
86 cd02929 TMADH_HD_FMN Trimethyl 99.3 5.3E-10 1.1E-14 106.2 19.6 149 80-255 154-325 (370)
87 TIGR00262 trpA tryptophan synt 99.3 9.5E-10 2.1E-14 99.3 20.1 152 72-256 20-234 (256)
88 CHL00200 trpA tryptophan synth 99.3 1.2E-09 2.5E-14 98.9 20.5 153 72-257 25-239 (263)
89 TIGR02814 pfaD_fam PfaD family 99.3 1.7E-09 3.6E-14 103.8 22.6 217 10-256 17-260 (444)
90 PRK01130 N-acetylmannosamine-6 99.2 2.4E-09 5.2E-14 94.6 20.3 97 155-254 109-207 (221)
91 PLN02591 tryptophan synthase 99.2 2.4E-09 5.2E-14 96.1 20.3 152 72-256 12-225 (250)
92 COG1902 NemA NADH:flavin oxido 99.2 2.1E-09 4.5E-14 101.4 20.6 103 151-255 200-324 (363)
93 COG0159 TrpA Tryptophan syntha 99.2 6.2E-09 1.4E-13 93.1 21.5 179 65-278 21-262 (265)
94 PRK04180 pyridoxal biosynthesi 99.2 2E-10 4.3E-15 103.3 11.9 136 79-255 27-240 (293)
95 PRK13111 trpA tryptophan synth 99.1 7.3E-09 1.6E-13 93.5 19.9 152 72-257 22-236 (258)
96 KOG2334 tRNA-dihydrouridine sy 99.1 9.5E-10 2E-14 102.5 13.4 206 8-255 7-248 (477)
97 PRK06552 keto-hydroxyglutarate 99.1 4.8E-09 1.1E-13 92.0 16.8 190 67-273 16-207 (213)
98 cd04729 NanE N-acetylmannosami 99.1 1.1E-08 2.4E-13 90.4 19.2 99 154-255 112-212 (219)
99 PRK10605 N-ethylmaleimide redu 99.1 2.9E-08 6.2E-13 94.1 22.3 99 151-255 210-327 (362)
100 PRK09140 2-dehydro-3-deoxy-6-p 99.1 7.8E-09 1.7E-13 90.4 16.5 169 70-254 16-184 (206)
101 PRK13125 trpA tryptophan synth 99.1 2.3E-08 4.9E-13 89.8 19.6 166 72-271 14-236 (244)
102 cd04727 pdxS PdxS is a subunit 99.1 2.5E-08 5.4E-13 89.6 19.3 98 154-254 101-230 (283)
103 PF00724 Oxidored_FMN: NADH:fl 99.0 1E-08 2.2E-13 96.5 17.1 226 3-255 6-327 (341)
104 KOG1799 Dihydropyrimidine dehy 99.0 3.8E-10 8.2E-15 102.7 6.9 175 79-296 221-424 (471)
105 PF04131 NanE: Putative N-acet 99.0 7.4E-09 1.6E-13 87.8 14.0 96 154-254 82-178 (192)
106 PF00290 Trp_syntA: Tryptophan 99.0 1.7E-08 3.6E-13 90.9 16.0 155 72-260 20-237 (259)
107 TIGR00343 pyridoxal 5'-phospha 99.0 7.2E-08 1.6E-12 86.7 19.2 99 154-255 103-234 (287)
108 cd00331 IGPS Indole-3-glycerol 99.0 2.3E-08 4.9E-13 88.1 16.0 101 155-255 62-207 (217)
109 cd04724 Tryptophan_synthase_al 99.0 4.4E-08 9.6E-13 87.8 17.6 155 72-256 10-222 (242)
110 PRK00278 trpC indole-3-glycero 98.9 7E-08 1.5E-12 87.4 16.9 102 154-255 100-246 (260)
111 COG3010 NanE Putative N-acetyl 98.9 4.5E-07 9.8E-12 77.5 19.6 94 156-254 119-214 (229)
112 TIGR01182 eda Entner-Doudoroff 98.9 6.9E-08 1.5E-12 83.9 14.1 171 67-254 11-181 (204)
113 PRK07114 keto-hydroxyglutarate 98.8 1.5E-07 3.3E-12 82.9 13.8 170 69-254 20-193 (222)
114 PLN02411 12-oxophytodienoate r 98.8 7.9E-07 1.7E-11 85.1 19.8 102 151-255 216-348 (391)
115 PRK14024 phosphoribosyl isomer 98.7 1.5E-07 3.2E-12 84.4 12.6 77 176-255 149-228 (241)
116 cd04731 HisF The cyclase subun 98.7 1.3E-07 2.7E-12 84.8 11.9 77 176-255 152-229 (243)
117 cd00452 KDPG_aldolase KDPG and 98.7 1.9E-07 4.2E-12 80.6 12.6 168 69-254 9-176 (190)
118 PRK06015 keto-hydroxyglutarate 98.7 5.2E-07 1.1E-11 78.3 15.1 168 69-253 9-176 (201)
119 PRK00507 deoxyribose-phosphate 98.7 3.6E-07 7.7E-12 80.7 13.1 98 149-251 104-210 (221)
120 PRK01033 imidazole glycerol ph 98.7 4.4E-07 9.5E-12 82.2 14.1 77 176-255 155-232 (258)
121 PF00218 IGPS: Indole-3-glycer 98.7 5.6E-07 1.2E-11 80.9 14.2 102 154-255 98-244 (254)
122 TIGR03572 WbuZ glycosyl amidat 98.7 1.2E-06 2.7E-11 77.9 16.3 75 176-253 156-231 (232)
123 PRK00748 1-(5-phosphoribosyl)- 98.7 3E-07 6.6E-12 81.7 12.3 77 176-255 149-226 (233)
124 PRK07455 keto-hydroxyglutarate 98.7 5.3E-07 1.1E-11 77.7 13.2 169 69-254 17-185 (187)
125 TIGR00007 phosphoribosylformim 98.6 5.8E-07 1.3E-11 79.8 12.6 77 176-255 148-224 (230)
126 PRK13585 1-(5-phosphoribosyl)- 98.6 2.2E-06 4.9E-11 76.6 15.6 77 176-255 152-228 (241)
127 PRK07695 transcriptional regul 98.6 1.7E-06 3.7E-11 75.3 13.7 94 158-255 87-183 (201)
128 cd04732 HisA HisA. Phosphorib 98.6 1E-06 2.2E-11 78.3 12.5 76 177-255 150-225 (234)
129 COG0800 Eda 2-keto-3-deoxy-6-p 98.6 8E-07 1.7E-11 76.9 11.2 166 72-254 21-186 (211)
130 cd04728 ThiG Thiazole synthase 98.5 2.4E-06 5.2E-11 75.5 14.1 78 173-254 131-209 (248)
131 TIGR01304 IMP_DH_rel_2 IMP deh 98.5 5.6E-07 1.2E-11 85.1 10.8 97 148-250 116-217 (369)
132 PRK00208 thiG thiazole synthas 98.5 3.1E-06 6.8E-11 74.9 14.2 78 173-254 131-209 (250)
133 PF01081 Aldolase: KDPG and KH 98.5 2.5E-07 5.5E-12 79.9 7.1 166 72-255 16-182 (196)
134 TIGR01163 rpe ribulose-phospha 98.5 7.8E-06 1.7E-10 71.3 16.3 47 207-254 149-198 (210)
135 COG0134 TrpC Indole-3-glycerol 98.5 2.3E-06 5.1E-11 76.3 12.8 102 154-255 96-242 (254)
136 PRK13957 indole-3-glycerol-pho 98.5 6.7E-06 1.5E-10 73.5 15.6 101 154-255 91-236 (247)
137 PRK13587 1-(5-phosphoribosyl)- 98.5 2.7E-06 5.7E-11 76.0 12.5 100 153-254 64-226 (234)
138 COG0107 HisF Imidazoleglycerol 98.5 4.4E-06 9.4E-11 72.8 13.2 117 153-284 62-251 (256)
139 COG0274 DeoC Deoxyribose-phosp 98.4 3.9E-06 8.5E-11 73.1 12.4 99 148-250 106-213 (228)
140 cd00945 Aldolase_Class_I Class 98.4 2.9E-05 6.2E-10 66.6 17.6 174 26-249 11-201 (201)
141 PRK13802 bifunctional indole-3 98.4 9.1E-06 2E-10 82.6 15.6 102 154-255 100-246 (695)
142 PRK08649 inosine 5-monophospha 98.4 2.1E-06 4.6E-11 81.3 10.0 99 148-250 115-216 (368)
143 PRK02083 imidazole glycerol ph 98.4 4.4E-06 9.5E-11 75.4 11.5 77 176-255 156-233 (253)
144 PRK05718 keto-hydroxyglutarate 98.4 1.4E-05 3E-10 70.2 14.2 171 66-254 17-187 (212)
145 TIGR00735 hisF imidazoleglycer 98.3 3.5E-06 7.5E-11 76.1 10.2 77 176-255 158-235 (254)
146 PF00977 His_biosynth: Histidi 98.3 8E-06 1.7E-10 72.6 12.2 100 154-255 62-226 (229)
147 PF05690 ThiG: Thiazole biosyn 98.3 5.1E-06 1.1E-10 72.7 10.1 79 173-255 131-210 (247)
148 cd04731 HisF The cyclase subun 98.3 7.5E-06 1.6E-10 73.3 11.5 76 176-254 30-105 (243)
149 TIGR00126 deoC deoxyribose-pho 98.3 1.6E-05 3.5E-10 69.6 12.9 96 150-250 101-205 (211)
150 PRK02083 imidazole glycerol ph 98.3 1E-05 2.3E-10 72.9 11.5 77 176-255 33-109 (253)
151 PLN02460 indole-3-glycerol-pho 98.2 1.8E-05 3.9E-10 73.5 12.9 103 153-255 168-323 (338)
152 PRK08883 ribulose-phosphate 3- 98.2 8.6E-05 1.9E-09 65.6 16.6 138 72-254 8-200 (220)
153 PRK00043 thiE thiamine-phospha 98.2 2.9E-05 6.2E-10 67.8 13.3 79 174-254 112-193 (212)
154 cd04726 KGPDC_HPS 3-Keto-L-gul 98.2 0.0001 2.2E-09 63.9 16.6 95 156-254 95-191 (202)
155 CHL00162 thiG thiamin biosynth 98.2 8E-06 1.7E-10 72.3 9.4 79 173-255 145-224 (267)
156 cd00959 DeoC 2-deoxyribose-5-p 98.2 4.3E-05 9.3E-10 66.7 14.0 92 152-247 102-201 (203)
157 COG0106 HisA Phosphoribosylfor 98.2 2.7E-05 5.9E-10 68.8 12.6 100 154-255 64-227 (241)
158 TIGR00735 hisF imidazoleglycer 98.2 1.8E-05 3.8E-10 71.5 11.8 76 177-255 34-109 (254)
159 cd04723 HisA_HisF Phosphoribos 98.2 3.2E-05 6.9E-10 69.0 12.7 101 153-255 66-224 (233)
160 PRK09427 bifunctional indole-3 98.2 1.2E-05 2.5E-10 78.2 10.6 129 153-291 98-271 (454)
161 TIGR03128 RuMP_HxlA 3-hexulose 98.1 0.0001 2.2E-09 64.2 14.9 96 155-254 93-191 (206)
162 PRK05848 nicotinate-nucleotide 98.1 4.2E-05 9.1E-10 69.6 12.3 89 154-254 169-262 (273)
163 PTZ00170 D-ribulose-5-phosphat 98.1 0.00035 7.6E-09 62.1 17.2 154 72-277 15-223 (228)
164 PRK14114 1-(5-phosphoribosyl)- 98.1 5.6E-05 1.2E-09 67.7 11.6 100 153-255 62-229 (241)
165 cd00958 DhnA Class I fructose- 98.0 0.00025 5.5E-09 63.1 15.2 83 162-255 119-220 (235)
166 cd00564 TMP_TenI Thiamine mono 98.0 0.00011 2.5E-09 62.7 12.1 78 174-254 103-183 (196)
167 cd00429 RPE Ribulose-5-phospha 98.0 0.00038 8.1E-09 60.5 15.4 35 220-255 166-200 (211)
168 KOG0399 Glutamate synthase [Am 98.0 3.2E-05 7E-10 80.4 9.7 151 143-293 1070-1269(2142)
169 cd00956 Transaldolase_FSA Tran 98.0 0.00079 1.7E-08 59.1 17.3 175 29-258 7-194 (211)
170 cd04732 HisA HisA. Phosphorib 98.0 5.1E-05 1.1E-09 67.4 10.0 76 176-254 32-107 (234)
171 PRK04128 1-(5-phosphoribosyl)- 98.0 0.00015 3.3E-09 64.4 12.8 102 153-255 61-217 (228)
172 PRK07028 bifunctional hexulose 98.0 8.4E-05 1.8E-09 72.2 12.0 95 155-254 98-195 (430)
173 PRK04302 triosephosphate isome 98.0 0.0008 1.7E-08 59.6 17.0 98 156-255 106-208 (223)
174 PRK00748 1-(5-phosphoribosyl)- 97.9 0.00013 2.8E-09 64.8 11.9 75 177-254 34-108 (233)
175 PRK06512 thiamine-phosphate py 97.9 0.00023 5.1E-09 62.9 13.0 96 157-255 100-198 (221)
176 PRK14024 phosphoribosyl isomer 97.9 0.00014 3E-09 65.2 11.3 74 177-254 36-109 (241)
177 TIGR00734 hisAF_rel hisA/hisF 97.9 8.8E-05 1.9E-09 65.6 9.8 72 178-255 146-219 (221)
178 PRK07226 fructose-bisphosphate 97.9 0.00029 6.3E-09 64.1 12.9 87 158-255 132-237 (267)
179 PLN02334 ribulose-phosphate 3- 97.9 0.00092 2E-08 59.4 15.8 115 155-278 106-225 (229)
180 cd00405 PRAI Phosphoribosylant 97.8 0.0025 5.4E-08 55.5 18.1 96 155-255 86-187 (203)
181 COG2022 ThiG Uncharacterized e 97.8 0.00012 2.7E-09 63.9 9.2 78 174-255 139-217 (262)
182 PF04481 DUF561: Protein of un 97.8 0.0016 3.5E-08 56.5 15.7 169 72-254 23-219 (242)
183 PTZ00314 inosine-5'-monophosph 97.8 0.0047 1E-07 61.1 21.1 67 177-249 244-310 (495)
184 PRK05581 ribulose-phosphate 3- 97.8 0.0019 4.2E-08 56.6 16.6 33 221-254 171-203 (220)
185 PRK07428 nicotinate-nucleotide 97.8 0.00042 9.1E-09 63.6 12.4 90 154-254 183-276 (288)
186 PRK08745 ribulose-phosphate 3- 97.8 0.0017 3.7E-08 57.4 15.9 137 72-253 12-203 (223)
187 TIGR00078 nadC nicotinate-nucl 97.8 0.00045 9.8E-09 62.7 12.5 87 155-252 166-253 (265)
188 PRK05742 nicotinate-nucleotide 97.8 0.00044 9.6E-09 63.1 12.3 88 155-254 178-266 (277)
189 COG0269 SgbH 3-hexulose-6-phos 97.8 0.00055 1.2E-08 59.5 12.1 107 163-276 104-213 (217)
190 TIGR00875 fsa_talC_mipB fructo 97.8 0.0079 1.7E-07 52.9 19.6 173 29-257 8-193 (213)
191 PRK02615 thiamine-phosphate py 97.8 0.00055 1.2E-08 64.4 13.2 79 173-254 247-327 (347)
192 TIGR00693 thiE thiamine-phosph 97.7 0.00056 1.2E-08 59.0 12.3 80 173-254 103-185 (196)
193 PF04131 NanE: Putative N-acet 97.7 0.001 2.2E-08 56.9 13.2 88 154-249 21-119 (192)
194 COG0036 Rpe Pentose-5-phosphat 97.7 0.0031 6.7E-08 55.2 16.6 135 72-253 12-201 (220)
195 KOG4175 Tryptophan synthase al 97.7 0.0013 2.8E-08 56.4 13.7 155 72-255 28-241 (268)
196 COG0214 SNZ1 Pyridoxine biosyn 97.7 0.0002 4.4E-09 62.5 8.7 99 155-255 67-243 (296)
197 COG0352 ThiE Thiamine monophos 97.7 0.0013 2.8E-08 57.7 13.8 95 158-255 95-192 (211)
198 cd01572 QPRTase Quinolinate ph 97.7 0.00052 1.1E-08 62.4 11.9 88 155-253 170-258 (268)
199 PRK11840 bifunctional sulfur c 97.7 0.00042 9.1E-09 64.0 11.2 96 156-255 186-284 (326)
200 PF01791 DeoC: DeoC/LacD famil 97.7 0.00027 5.9E-09 63.0 9.8 93 154-253 111-234 (236)
201 TIGR03572 WbuZ glycosyl amidat 97.7 0.00057 1.2E-08 60.7 11.7 76 176-254 33-108 (232)
202 cd01573 modD_like ModD; Quinol 97.7 0.00058 1.3E-08 62.3 11.9 88 154-252 171-261 (272)
203 PRK08072 nicotinate-nucleotide 97.7 0.00064 1.4E-08 62.1 12.1 88 155-253 176-264 (277)
204 PRK06806 fructose-bisphosphate 97.6 0.027 5.9E-07 51.6 22.2 109 174-285 153-278 (281)
205 TIGR01919 hisA-trpF 1-(5-phosp 97.6 0.00038 8.2E-09 62.5 9.3 74 177-255 153-231 (243)
206 PRK13585 1-(5-phosphoribosyl)- 97.6 0.00081 1.7E-08 60.0 11.3 76 176-254 35-110 (241)
207 cd01568 QPRTase_NadC Quinolina 97.6 0.0012 2.5E-08 60.2 12.4 87 155-253 169-259 (269)
208 cd04727 pdxS PdxS is a subunit 97.6 0.0025 5.5E-08 57.7 14.1 85 153-248 53-138 (283)
209 PRK13307 bifunctional formalde 97.6 0.0049 1.1E-07 58.9 16.9 143 54-254 217-363 (391)
210 TIGR01182 eda Entner-Doudoroff 97.6 0.00075 1.6E-08 58.8 10.3 84 150-248 43-127 (204)
211 TIGR02129 hisA_euk phosphoribo 97.6 0.0015 3.3E-08 58.6 12.5 42 153-194 64-105 (253)
212 PF02581 TMP-TENI: Thiamine mo 97.6 0.001 2.2E-08 56.8 10.9 77 173-252 102-180 (180)
213 PRK05283 deoxyribose-phosphate 97.5 0.0011 2.5E-08 59.5 11.4 100 149-254 113-227 (257)
214 PRK09722 allulose-6-phosphate 97.5 0.0078 1.7E-07 53.4 16.5 119 153-276 47-220 (229)
215 PRK04128 1-(5-phosphoribosyl)- 97.5 0.00057 1.2E-08 60.7 9.2 73 177-253 34-106 (228)
216 PRK01033 imidazole glycerol ph 97.5 0.0013 2.9E-08 59.5 11.7 75 177-254 34-108 (258)
217 TIGR00343 pyridoxal 5'-phospha 97.5 0.0013 2.7E-08 59.6 11.3 83 154-247 56-139 (287)
218 PRK13587 1-(5-phosphoribosyl)- 97.5 0.0013 2.8E-08 58.7 11.4 75 177-254 35-110 (234)
219 PRK12653 fructose-6-phosphate 97.5 0.029 6.2E-07 49.6 19.6 173 29-257 8-195 (220)
220 TIGR02129 hisA_euk phosphoribo 97.5 0.00057 1.2E-08 61.4 9.0 69 176-254 41-109 (253)
221 TIGR01949 AroFGH_arch predicte 97.5 0.0017 3.6E-08 58.8 12.2 88 157-255 128-233 (258)
222 PRK08005 epimerase; Validated 97.5 0.0072 1.6E-07 53.0 15.5 136 72-253 9-195 (210)
223 TIGR00007 phosphoribosylformim 97.5 0.0019 4.1E-08 57.3 12.1 75 177-254 32-106 (230)
224 TIGR00259 thylakoid_BtpA membr 97.5 0.011 2.3E-07 53.4 16.8 70 177-253 161-231 (257)
225 COG0107 HisF Imidazoleglycerol 97.5 0.001 2.2E-08 58.3 9.7 77 176-255 33-109 (256)
226 PRK08385 nicotinate-nucleotide 97.5 0.0018 3.9E-08 59.1 11.8 87 155-253 171-263 (278)
227 PRK01362 putative translaldola 97.4 0.035 7.7E-07 48.8 19.4 173 30-257 9-193 (214)
228 KOG1606 Stationary phase-induc 97.4 0.0012 2.6E-08 56.9 9.7 99 155-255 68-244 (296)
229 PLN02446 (5-phosphoribosyl)-5- 97.4 0.0022 4.8E-08 57.9 11.7 76 175-253 164-242 (262)
230 PRK12655 fructose-6-phosphate 97.4 0.044 9.5E-07 48.4 19.5 187 29-271 8-211 (220)
231 PF00977 His_biosynth: Histidi 97.4 0.0011 2.4E-08 59.0 9.5 76 177-255 33-108 (229)
232 PRK06106 nicotinate-nucleotide 97.4 0.0026 5.7E-08 58.1 11.9 88 154-253 181-270 (281)
233 PRK13586 1-(5-phosphoribosyl)- 97.4 0.0011 2.4E-08 59.1 9.2 73 177-255 150-224 (232)
234 PRK04169 geranylgeranylglycery 97.4 0.0019 4E-08 57.5 10.5 65 185-254 153-218 (232)
235 cd04723 HisA_HisF Phosphoribos 97.4 0.0013 2.8E-08 58.7 9.4 74 176-253 38-111 (233)
236 PRK06552 keto-hydroxyglutarate 97.4 0.0018 3.8E-08 57.0 10.1 84 150-248 48-135 (213)
237 PRK12656 fructose-6-phosphate 97.3 0.056 1.2E-06 47.8 19.3 186 30-271 9-213 (222)
238 PF01729 QRPTase_C: Quinolinat 97.3 0.0027 5.8E-08 53.8 10.6 89 154-254 67-160 (169)
239 PLN02274 inosine-5'-monophosph 97.3 0.034 7.4E-07 55.1 19.6 68 176-249 250-317 (505)
240 PRK13586 1-(5-phosphoribosyl)- 97.3 0.0039 8.4E-08 55.6 11.6 74 177-254 34-107 (232)
241 TIGR01769 GGGP geranylgeranylg 97.2 0.0022 4.8E-08 55.9 9.4 66 179-249 140-205 (205)
242 PRK06559 nicotinate-nucleotide 97.2 0.0049 1.1E-07 56.4 11.9 87 155-253 185-273 (290)
243 PRK06543 nicotinate-nucleotide 97.2 0.0047 1E-07 56.4 11.7 87 155-253 181-269 (281)
244 PRK06015 keto-hydroxyglutarate 97.2 0.0031 6.6E-08 54.9 10.0 83 151-248 40-123 (201)
245 PRK06801 hypothetical protein; 97.2 0.048 1E-06 50.1 18.3 108 175-285 157-283 (286)
246 PRK03512 thiamine-phosphate py 97.2 0.0094 2E-07 52.3 13.2 80 174-255 110-192 (211)
247 cd02812 PcrB_like PcrB_like pr 97.2 0.002 4.4E-08 56.7 9.0 69 179-254 141-209 (219)
248 TIGR01859 fruc_bis_ald_ fructo 97.2 0.17 3.7E-06 46.4 23.8 108 174-285 153-279 (282)
249 PF01884 PcrB: PcrB family; I 97.2 0.0024 5.1E-08 56.6 8.8 66 185-255 152-217 (230)
250 PLN02898 HMP-P kinase/thiamin- 97.2 0.0076 1.7E-07 59.8 13.5 94 158-254 381-480 (502)
251 PF01081 Aldolase: KDPG and KH 97.2 0.0029 6.2E-08 54.8 9.1 84 151-249 44-128 (196)
252 PF09370 TIM-br_sig_trns: TIM- 97.1 0.05 1.1E-06 49.0 17.0 184 32-252 26-249 (268)
253 PRK12290 thiE thiamine-phospha 97.1 0.0088 1.9E-07 57.6 13.0 87 168-255 301-398 (437)
254 PF00834 Ribul_P_3_epim: Ribul 97.1 0.0077 1.7E-07 52.5 11.4 137 72-254 8-199 (201)
255 PLN02446 (5-phosphoribosyl)-5- 97.1 0.006 1.3E-07 55.1 10.9 71 176-254 46-116 (262)
256 PRK12376 putative translaldola 97.1 0.16 3.5E-06 45.3 19.8 177 29-257 13-207 (236)
257 PRK09016 quinolinate phosphori 97.1 0.0066 1.4E-07 55.8 11.3 87 155-253 197-284 (296)
258 PRK14114 1-(5-phosphoribosyl)- 97.1 0.0046 9.9E-08 55.4 9.7 74 177-254 34-107 (241)
259 PRK06978 nicotinate-nucleotide 97.0 0.009 1.9E-07 54.8 11.6 87 155-253 194-281 (294)
260 TIGR02134 transald_staph trans 97.0 0.22 4.7E-06 44.5 20.6 176 29-256 13-206 (236)
261 PRK07807 inosine 5-monophospha 97.0 0.067 1.5E-06 52.7 18.4 67 177-249 230-296 (479)
262 cd03319 L-Ala-DL-Glu_epimerase 97.0 0.036 7.8E-07 51.5 15.8 127 65-251 126-260 (316)
263 PF03437 BtpA: BtpA family; I 97.0 0.03 6.6E-07 50.4 14.6 70 177-254 162-232 (254)
264 TIGR01768 GGGP-family geranylg 97.0 0.0056 1.2E-07 54.0 9.6 66 185-254 148-213 (223)
265 PRK07896 nicotinate-nucleotide 97.0 0.01 2.3E-07 54.4 11.7 87 155-253 188-278 (289)
266 COG3010 NanE Putative N-acetyl 97.0 0.033 7.2E-07 48.1 13.8 87 154-247 55-152 (229)
267 TIGR01919 hisA-trpF 1-(5-phosp 97.0 0.0055 1.2E-07 55.0 9.7 74 177-254 35-108 (243)
268 PRK13813 orotidine 5'-phosphat 97.0 0.0046 9.9E-08 54.3 8.8 117 153-276 43-213 (215)
269 cd00452 KDPG_aldolase KDPG and 97.0 0.0099 2.2E-07 51.2 10.7 81 153-248 42-123 (190)
270 PLN02617 imidazole glycerol ph 97.0 0.0066 1.4E-07 60.5 10.8 75 176-255 441-518 (538)
271 PRK06096 molybdenum transport 96.9 0.012 2.6E-07 53.9 11.5 86 154-251 177-266 (284)
272 PRK13306 ulaD 3-keto-L-gulonat 96.9 0.023 4.9E-07 50.1 12.9 116 154-276 44-212 (216)
273 PRK08227 autoinducer 2 aldolas 96.9 0.024 5.2E-07 51.4 13.2 83 159-255 134-232 (264)
274 TIGR01334 modD putative molybd 96.9 0.014 3E-07 53.3 11.6 87 154-252 176-266 (277)
275 PRK08999 hypothetical protein; 96.9 0.0052 1.1E-07 57.0 9.0 76 174-252 234-311 (312)
276 PRK01130 N-acetylmannosamine-6 96.9 0.059 1.3E-06 47.4 15.1 91 154-249 45-146 (221)
277 KOG4201 Anthranilate synthase 96.8 0.013 2.9E-07 50.8 10.0 97 154-255 175-272 (289)
278 PRK07114 keto-hydroxyglutarate 96.8 0.01 2.2E-07 52.5 9.4 81 153-248 53-138 (222)
279 PRK05718 keto-hydroxyglutarate 96.7 0.017 3.6E-07 50.8 10.5 82 152-248 52-134 (212)
280 PRK05567 inosine 5'-monophosph 96.7 0.28 6.1E-06 48.5 20.2 68 176-249 230-297 (486)
281 PLN02617 imidazole glycerol ph 96.7 0.0098 2.1E-07 59.3 9.6 77 177-255 271-360 (538)
282 PRK09140 2-dehydro-3-deoxy-6-p 96.7 0.034 7.3E-07 48.7 11.8 81 153-248 48-130 (206)
283 cd04729 NanE N-acetylmannosami 96.7 0.12 2.6E-06 45.4 15.5 90 155-249 50-150 (219)
284 cd04726 KGPDC_HPS 3-Keto-L-gul 96.6 0.098 2.1E-06 45.1 14.5 87 154-249 41-133 (202)
285 PRK09517 multifunctional thiam 96.6 0.041 8.9E-07 57.3 13.5 80 174-254 109-199 (755)
286 cd00381 IMPDH IMPDH: The catal 96.5 0.034 7.3E-07 52.1 11.6 68 176-249 96-163 (325)
287 PRK07315 fructose-bisphosphate 96.5 0.082 1.8E-06 48.8 13.8 79 174-254 154-237 (293)
288 PLN02716 nicotinate-nucleotide 96.5 0.045 9.8E-07 50.6 11.9 96 155-253 188-294 (308)
289 COG0106 HisA Phosphoribosylfor 96.5 0.03 6.6E-07 49.7 10.4 75 176-253 34-108 (241)
290 PRK00230 orotidine 5'-phosphat 96.5 0.037 8.1E-07 49.2 11.0 43 154-196 43-90 (230)
291 COG0157 NadC Nicotinate-nucleo 96.4 0.043 9.4E-07 49.7 11.2 87 155-252 176-265 (280)
292 PRK08091 ribulose-phosphate 3- 96.4 0.16 3.4E-06 45.1 14.7 96 155-253 107-211 (228)
293 PLN02591 tryptophan synthase 96.4 0.082 1.8E-06 47.6 12.8 41 154-194 178-219 (250)
294 COG0800 Eda 2-keto-3-deoxy-6-p 96.3 0.018 3.9E-07 50.1 7.9 83 150-247 48-131 (211)
295 PF00478 IMPDH: IMP dehydrogen 96.3 0.037 8E-07 52.2 10.4 68 176-249 110-177 (352)
296 PF03932 CutC: CutC family; I 96.3 0.055 1.2E-06 47.1 10.7 121 74-247 70-197 (201)
297 PRK14057 epimerase; Provisiona 96.2 0.25 5.4E-06 44.5 15.0 77 175-253 144-225 (254)
298 cd04728 ThiG Thiazole synthase 96.2 0.028 6E-07 50.1 8.7 106 64-193 91-204 (248)
299 PRK06843 inosine 5-monophospha 96.2 0.023 5E-07 54.5 8.8 67 177-249 156-222 (404)
300 cd00408 DHDPS-like Dihydrodipi 96.2 0.92 2E-05 41.2 20.8 181 12-252 2-204 (281)
301 TIGR00736 nifR3_rel_arch TIM-b 96.2 0.05 1.1E-06 48.4 10.2 42 152-193 177-220 (231)
302 COG0434 SgcQ Predicted TIM-bar 96.2 0.65 1.4E-05 41.2 16.6 48 203-254 190-237 (263)
303 PRK08185 hypothetical protein; 96.1 1.1 2.3E-05 41.2 22.0 109 175-285 150-277 (283)
304 PRK11572 copper homeostasis pr 96.1 0.13 2.9E-06 46.0 12.5 122 74-249 71-198 (248)
305 PRK07998 gatY putative fructos 96.1 1.1 2.4E-05 41.1 19.8 110 174-285 153-278 (283)
306 TIGR02320 PEP_mutase phosphoen 96.1 0.46 1E-05 43.7 16.4 150 64-255 80-246 (285)
307 PLN02417 dihydrodipicolinate s 96.1 0.056 1.2E-06 49.5 10.3 92 179-273 28-124 (280)
308 COG0135 TrpF Phosphoribosylant 96.0 0.94 2E-05 39.6 17.8 93 153-253 86-187 (208)
309 cd04739 DHOD_like Dihydroorota 96.0 0.27 5.9E-06 46.0 14.7 150 11-193 99-266 (325)
310 PRK03170 dihydrodipicolinate s 96.0 1.2 2.7E-05 40.8 20.6 182 12-253 6-209 (292)
311 TIGR02313 HpaI-NOT-DapA 2,4-di 96.0 0.068 1.5E-06 49.3 10.4 94 178-274 26-124 (294)
312 CHL00162 thiG thiamin biosynth 96.0 0.031 6.6E-07 49.9 7.6 105 64-192 105-217 (267)
313 TIGR01302 IMP_dehydrog inosine 95.9 0.034 7.3E-07 54.4 8.6 68 176-249 226-293 (450)
314 PRK00208 thiG thiazole synthas 95.9 0.048 1.1E-06 48.6 8.7 106 64-193 91-204 (250)
315 cd03315 MLE_like Muconate lact 95.9 0.41 9E-06 43.2 15.1 86 154-249 116-210 (265)
316 PRK06852 aldolase; Validated 95.9 0.19 4.2E-06 46.5 12.9 89 162-255 164-271 (304)
317 cd00951 KDGDH 5-dehydro-4-deox 95.9 0.086 1.9E-06 48.5 10.7 92 179-274 27-123 (289)
318 PRK03620 5-dehydro-4-deoxygluc 95.9 0.076 1.6E-06 49.2 10.3 92 179-274 34-130 (303)
319 CHL00200 trpA tryptophan synth 95.9 0.13 2.8E-06 46.7 11.5 41 154-194 191-232 (263)
320 PRK11750 gltB glutamate syntha 95.9 0.078 1.7E-06 58.0 11.5 117 178-294 602-732 (1485)
321 PRK13397 3-deoxy-7-phosphohept 95.8 1.3 2.8E-05 39.8 18.3 195 7-250 10-220 (250)
322 cd00952 CHBPH_aldolase Trans-o 95.8 0.079 1.7E-06 49.3 10.2 93 179-274 35-132 (309)
323 PRK07565 dihydroorotate dehydr 95.8 0.14 3.1E-06 48.1 11.9 95 154-250 90-198 (334)
324 cd00331 IGPS Indole-3-glycerol 95.8 0.048 1E-06 47.8 8.3 72 176-253 34-105 (217)
325 cd00408 DHDPS-like Dihydrodipi 95.8 0.098 2.1E-06 47.7 10.5 93 178-273 23-120 (281)
326 cd03316 MR_like Mandelate race 95.7 0.2 4.3E-06 47.3 12.5 123 74-249 139-270 (357)
327 PF05690 ThiG: Thiazole biosyn 95.6 0.033 7.1E-07 49.2 6.4 159 4-192 1-203 (247)
328 TIGR00734 hisAF_rel hisA/hisF 95.6 0.075 1.6E-06 47.0 8.9 73 176-254 39-113 (221)
329 TIGR03249 KdgD 5-dehydro-4-deo 95.6 0.13 2.7E-06 47.5 10.6 92 179-274 32-128 (296)
330 TIGR01305 GMP_reduct_1 guanosi 95.6 0.11 2.4E-06 48.5 9.9 68 176-249 109-178 (343)
331 KOG2335 tRNA-dihydrouridine sy 95.6 0.21 4.5E-06 46.8 11.7 89 63-193 142-233 (358)
332 cd02810 DHOD_DHPD_FMN Dihydroo 95.5 0.25 5.4E-06 45.2 12.3 155 11-193 98-272 (289)
333 COG0329 DapA Dihydrodipicolina 95.5 0.13 2.8E-06 47.6 10.2 93 179-274 31-128 (299)
334 COG1830 FbaB DhnA-type fructos 95.5 0.33 7.2E-06 43.7 12.3 95 162-270 140-255 (265)
335 TIGR00683 nanA N-acetylneurami 95.5 0.16 3.5E-06 46.8 10.7 93 178-273 26-124 (290)
336 PF01207 Dus: Dihydrouridine s 95.5 0.086 1.9E-06 49.0 9.0 88 62-193 122-213 (309)
337 TIGR02313 HpaI-NOT-DapA 2,4-di 95.4 2.1 4.6E-05 39.4 20.8 181 12-252 5-209 (294)
338 PRK09250 fructose-bisphosphate 95.4 0.25 5.5E-06 46.3 11.8 77 179-255 223-324 (348)
339 PRK07107 inosine 5-monophospha 95.4 0.078 1.7E-06 52.6 8.8 68 177-249 245-312 (502)
340 PRK12595 bifunctional 3-deoxy- 95.3 2.7 5.8E-05 40.0 18.7 191 13-252 120-325 (360)
341 KOG3111 D-ribulose-5-phosphate 95.3 0.8 1.7E-05 39.4 13.3 50 220-276 169-218 (224)
342 PRK12858 tagatose 1,6-diphosph 95.3 0.099 2.1E-06 49.2 8.8 87 179-268 190-299 (340)
343 cd00954 NAL N-Acetylneuraminic 95.2 0.17 3.7E-06 46.4 10.2 94 178-274 26-125 (288)
344 TIGR01306 GMP_reduct_2 guanosi 95.2 0.14 3.1E-06 47.7 9.6 78 166-249 83-165 (321)
345 TIGR00674 dapA dihydrodipicoli 95.2 0.19 4.2E-06 46.0 10.4 93 179-274 25-122 (285)
346 PF00701 DHDPS: Dihydrodipicol 95.2 0.17 3.6E-06 46.4 9.8 92 178-272 27-123 (289)
347 TIGR01303 IMP_DH_rel_1 IMP deh 95.1 0.12 2.5E-06 51.0 9.1 69 176-250 227-295 (475)
348 PRK05096 guanosine 5'-monophos 95.1 0.23 5E-06 46.4 10.4 68 176-249 110-179 (346)
349 TIGR03128 RuMP_HxlA 3-hexulose 95.1 0.57 1.2E-05 40.5 12.6 88 154-250 40-134 (206)
350 TIGR03569 NeuB_NnaB N-acetylne 95.1 0.65 1.4E-05 43.5 13.5 143 72-244 12-161 (329)
351 cd00950 DHDPS Dihydrodipicolin 95.1 0.21 4.5E-06 45.7 10.1 93 178-273 26-123 (284)
352 cd00377 ICL_PEPM Members of th 95.0 0.55 1.2E-05 42.1 12.5 97 155-251 59-182 (243)
353 PRK04147 N-acetylneuraminate l 95.0 0.21 4.5E-06 46.0 10.1 92 179-273 30-127 (293)
354 TIGR00674 dapA dihydrodipicoli 95.0 2.8 6E-05 38.3 21.3 183 12-253 3-206 (285)
355 cd00516 PRTase_typeII Phosphor 95.0 0.36 7.8E-06 44.0 11.4 95 155-254 170-272 (281)
356 PRK13957 indole-3-glycerol-pho 94.9 0.29 6.2E-06 44.0 10.3 71 177-253 65-135 (247)
357 COG0159 TrpA Tryptophan syntha 94.9 0.18 3.9E-06 45.6 8.9 40 153-193 193-233 (265)
358 PRK10550 tRNA-dihydrouridine s 94.8 0.44 9.5E-06 44.4 11.8 87 64-193 135-224 (312)
359 COG1646 Predicted phosphate-bi 94.8 0.15 3.3E-06 44.9 8.1 63 185-254 163-225 (240)
360 cd00439 Transaldolase Transald 94.8 2.9 6.3E-05 37.7 16.7 98 155-256 130-241 (252)
361 COG2022 ThiG Uncharacterized e 94.8 0.12 2.5E-06 45.6 7.2 105 64-192 98-210 (262)
362 KOG2550 IMP dehydrogenase/GMP 94.8 1.1 2.5E-05 42.7 14.3 67 177-249 254-320 (503)
363 cd00947 TBP_aldolase_IIB Tagat 94.8 3.2 6.9E-05 38.0 19.4 109 174-284 148-274 (276)
364 PF04898 Glu_syn_central: Glut 94.7 0.47 1E-05 43.5 11.3 117 177-293 146-277 (287)
365 PF00701 DHDPS: Dihydrodipicol 94.7 3.4 7.3E-05 37.8 20.3 181 13-253 7-209 (289)
366 PRK07709 fructose-bisphosphate 94.7 0.78 1.7E-05 42.2 12.7 110 174-285 156-282 (285)
367 TIGR01037 pyrD_sub1_fam dihydr 94.6 0.2 4.4E-06 46.1 9.0 42 152-193 221-263 (300)
368 PRK03170 dihydrodipicolinate s 94.6 0.36 7.8E-06 44.3 10.6 94 178-274 27-125 (292)
369 COG3142 CutC Uncharacterized p 94.6 0.78 1.7E-05 40.4 11.8 119 74-245 71-196 (241)
370 PLN02979 glycolate oxidase 94.6 0.35 7.6E-06 45.8 10.3 92 153-250 111-252 (366)
371 TIGR00262 trpA tryptophan synt 94.5 0.64 1.4E-05 42.0 11.7 42 153-194 186-228 (256)
372 cd04740 DHOD_1B_like Dihydroor 94.5 0.46 1E-05 43.6 11.0 43 151-193 217-260 (296)
373 COG0352 ThiE Thiamine monophos 94.5 1.6 3.5E-05 38.3 13.6 44 150-193 143-186 (211)
374 PF04309 G3P_antiterm: Glycero 94.4 0.029 6.3E-07 47.6 2.4 139 72-254 27-174 (175)
375 PLN02535 glycolate oxidase 94.4 0.45 9.7E-06 45.3 10.6 87 160-249 118-251 (364)
376 cd00950 DHDPS Dihydrodipicolin 94.2 4.2 9.1E-05 37.0 21.1 181 12-252 5-207 (284)
377 PRK13523 NADPH dehydrogenase N 94.1 0.42 9E-06 45.0 10.0 88 64-192 209-304 (337)
378 cd01571 NAPRTase_B Nicotinate 94.0 0.7 1.5E-05 42.8 11.0 95 155-254 172-278 (302)
379 PRK08883 ribulose-phosphate 3- 94.0 0.36 7.7E-06 42.7 8.7 41 153-193 150-195 (220)
380 PRK05458 guanosine 5'-monophos 93.9 0.56 1.2E-05 43.9 10.2 67 177-249 100-168 (326)
381 PLN02493 probable peroxisomal 93.9 0.54 1.2E-05 44.7 10.2 43 205-250 211-253 (367)
382 PRK11840 bifunctional sulfur c 93.8 0.2 4.3E-06 46.6 6.9 105 64-192 165-277 (326)
383 cd03174 DRE_TIM_metallolyase D 93.8 3.2 6.9E-05 37.1 14.8 154 74-274 17-187 (265)
384 TIGR03569 NeuB_NnaB N-acetylne 93.8 6.1 0.00013 37.1 19.6 232 13-284 1-260 (329)
385 cd02801 DUS_like_FMN Dihydrour 93.7 0.89 1.9E-05 39.9 10.8 42 152-193 170-213 (231)
386 PRK12738 kbaY tagatose-bisphos 93.7 2.2 4.9E-05 39.2 13.5 109 174-285 155-281 (286)
387 cd00951 KDGDH 5-dehydro-4-deox 93.6 5.7 0.00012 36.4 24.4 182 12-252 5-207 (289)
388 PRK07259 dihydroorotate dehydr 93.6 0.78 1.7E-05 42.3 10.6 43 151-193 220-263 (301)
389 PRK13111 trpA tryptophan synth 93.4 2.1 4.5E-05 38.8 12.8 41 153-194 188-229 (258)
390 PRK09195 gatY tagatose-bisphos 93.4 2.6 5.6E-05 38.7 13.5 110 174-285 155-281 (284)
391 PRK07455 keto-hydroxyglutarate 93.4 1.1 2.3E-05 38.6 10.4 80 154-248 51-131 (187)
392 COG2089 SpsE Sialic acid synth 93.4 6.2 0.00014 36.8 15.7 209 2-246 1-232 (347)
393 TIGR03249 KdgD 5-dehydro-4-deo 93.4 6.4 0.00014 36.2 21.7 183 12-252 10-212 (296)
394 TIGR00737 nifR3_yhdG putative 93.3 1.1 2.4E-05 41.7 11.3 40 153-192 180-221 (319)
395 TIGR01769 GGGP geranylgeranylg 93.3 0.63 1.4E-05 40.7 8.8 39 154-192 165-204 (205)
396 cd02809 alpha_hydroxyacid_oxid 93.3 0.92 2E-05 41.9 10.5 86 159-249 109-200 (299)
397 cd00945 Aldolase_Class_I Class 93.3 1.6 3.4E-05 36.9 11.4 65 178-255 18-91 (201)
398 PRK05286 dihydroorotate dehydr 93.2 0.27 5.9E-06 46.4 7.1 103 64-193 213-318 (344)
399 PRK05835 fructose-bisphosphate 93.2 3.1 6.7E-05 38.6 13.7 110 174-285 155-304 (307)
400 cd04738 DHOD_2_like Dihydrooro 93.2 0.28 6.1E-06 45.9 7.0 103 64-193 204-309 (327)
401 PF00290 Trp_syntA: Tryptophan 93.2 0.26 5.6E-06 44.7 6.5 40 154-194 187-227 (259)
402 cd00564 TMP_TenI Thiamine mono 93.2 4.6 9.9E-05 34.0 14.1 44 151-194 136-179 (196)
403 PRK10415 tRNA-dihydrouridine s 93.1 1.4 3.1E-05 41.1 11.6 41 153-193 182-224 (321)
404 COG0036 Rpe Pentose-5-phosphat 93.1 0.56 1.2E-05 41.2 8.2 41 153-193 153-197 (220)
405 PRK08610 fructose-bisphosphate 93.0 2.3 4.9E-05 39.2 12.5 110 174-285 156-282 (286)
406 COG5016 Pyruvate/oxaloacetate 93.0 1.8 3.9E-05 41.4 11.9 47 148-194 182-232 (472)
407 PRK07695 transcriptional regul 92.9 3.2 7E-05 35.7 12.9 42 153-194 137-178 (201)
408 COG0042 tRNA-dihydrouridine sy 92.9 0.81 1.8E-05 42.8 9.7 42 152-193 184-228 (323)
409 COG2876 AroA 3-deoxy-D-arabino 92.9 6.4 0.00014 35.6 14.6 93 154-249 142-249 (286)
410 TIGR03586 PseI pseudaminic aci 92.9 3.3 7.2E-05 38.8 13.6 147 72-248 13-166 (327)
411 COG1954 GlpP Glycerol-3-phosph 92.9 2 4.4E-05 36.2 10.8 78 64-194 96-174 (181)
412 PRK08318 dihydropyrimidine deh 92.7 0.57 1.2E-05 45.4 8.7 111 63-194 169-283 (420)
413 cd02911 arch_FMN Archeal FMN-b 92.7 1.1 2.4E-05 39.9 9.8 40 152-193 180-220 (233)
414 cd02933 OYE_like_FMN Old yello 92.7 1 2.2E-05 42.4 10.0 42 151-192 271-313 (338)
415 PRK06512 thiamine-phosphate py 92.6 3.9 8.5E-05 36.1 13.1 43 152-194 151-193 (221)
416 PLN02334 ribulose-phosphate 3- 92.5 6.3 0.00014 34.8 14.5 90 154-250 54-147 (229)
417 TIGR00742 yjbN tRNA dihydrouri 92.5 1.7 3.7E-05 40.6 11.3 94 63-193 124-223 (318)
418 KOG3111 D-ribulose-5-phosphate 92.5 2 4.4E-05 36.9 10.4 39 154-192 157-196 (224)
419 PRK07709 fructose-bisphosphate 92.5 0.78 1.7E-05 42.1 8.7 46 149-194 187-234 (285)
420 TIGR01858 tag_bisphos_ald clas 92.4 0.69 1.5E-05 42.4 8.2 45 149-193 184-230 (282)
421 TIGR02319 CPEP_Pphonmut carbox 92.3 7.2 0.00016 36.0 14.8 66 179-255 171-239 (294)
422 cd00377 ICL_PEPM Members of th 92.2 8.2 0.00018 34.5 15.4 179 30-255 18-232 (243)
423 cd02940 DHPD_FMN Dihydropyrimi 92.2 1.3 2.7E-05 41.0 9.9 109 63-193 169-281 (299)
424 TIGR00167 cbbA ketose-bisphosp 92.2 4.5 9.8E-05 37.2 13.3 110 174-285 158-285 (288)
425 COG1954 GlpP Glycerol-3-phosph 92.0 0.7 1.5E-05 38.9 7.0 88 155-254 86-178 (181)
426 PF02581 TMP-TENI: Thiamine mo 92.0 2.4 5.2E-05 35.9 10.7 44 150-193 134-177 (180)
427 PRK12738 kbaY tagatose-bisphos 91.9 0.95 2.1E-05 41.6 8.6 45 149-193 186-232 (286)
428 TIGR02317 prpB methylisocitrat 91.9 7.1 0.00015 35.9 14.3 189 13-255 13-235 (285)
429 PRK11320 prpB 2-methylisocitra 91.8 1.2 2.5E-05 41.2 9.0 83 165-249 16-113 (292)
430 PF03102 NeuB: NeuB family; I 91.8 2 4.3E-05 38.5 10.3 79 151-240 52-133 (241)
431 COG0329 DapA Dihydrodipicolina 91.8 11 0.00023 34.9 23.8 182 11-251 8-211 (299)
432 cd02811 IDI-2_FMN Isopentenyl- 91.7 2.6 5.7E-05 39.4 11.6 99 149-250 96-210 (326)
433 cd03332 LMO_FMN L-Lactate 2-mo 91.7 2.2 4.7E-05 41.0 11.0 41 206-249 241-281 (383)
434 cd04733 OYE_like_2_FMN Old yel 91.7 2.4 5.3E-05 39.8 11.3 40 153-192 280-321 (338)
435 PRK00366 ispG 4-hydroxy-3-meth 91.7 4.2 9.1E-05 38.3 12.5 78 64-192 27-107 (360)
436 PRK12737 gatY tagatose-bisphos 91.7 1.1 2.3E-05 41.3 8.5 45 149-193 186-232 (284)
437 cd02922 FCB2_FMN Flavocytochro 91.6 2.4 5.2E-05 40.0 11.2 83 165-250 117-242 (344)
438 KOG0134 NADH:flavin oxidoreduc 91.6 3.3 7.2E-05 39.6 12.0 104 151-255 225-354 (400)
439 PRK11320 prpB 2-methylisocitra 91.5 11 0.00025 34.7 15.3 180 30-255 26-240 (292)
440 PRK09195 gatY tagatose-bisphos 91.4 1.1 2.3E-05 41.2 8.4 45 149-193 186-232 (284)
441 PRK08005 epimerase; Validated 91.4 1.8 3.8E-05 38.0 9.4 40 154-193 151-191 (210)
442 PRK08610 fructose-bisphosphate 91.4 1.2 2.5E-05 41.0 8.5 46 149-194 187-234 (286)
443 PRK00278 trpC indole-3-glycero 91.4 2.7 5.8E-05 38.1 10.9 72 176-253 73-144 (260)
444 PRK08673 3-deoxy-7-phosphohept 91.3 6.3 0.00014 37.1 13.5 127 154-283 190-333 (335)
445 cd04741 DHOD_1A_like Dihydroor 91.3 1.3 2.9E-05 40.8 8.9 109 63-193 158-272 (294)
446 PRK12857 fructose-1,6-bisphosp 91.2 1.2 2.6E-05 40.9 8.5 45 149-193 186-232 (284)
447 PRK09427 bifunctional indole-3 91.1 4.6 9.9E-05 39.7 12.8 84 154-248 197-283 (454)
448 PRK06806 fructose-bisphosphate 91.1 1.7 3.7E-05 39.9 9.3 177 10-194 41-231 (281)
449 PF01116 F_bP_aldolase: Fructo 91.0 5.5 0.00012 36.7 12.6 110 175-285 156-284 (287)
450 PRK06801 hypothetical protein; 91.0 1.7 3.6E-05 40.1 9.2 46 149-194 187-234 (286)
451 PF00218 IGPS: Indole-3-glycer 91.0 1.9 4.1E-05 39.0 9.4 71 177-253 72-142 (254)
452 PRK03620 5-dehydro-4-deoxygluc 91.0 13 0.00028 34.4 22.1 182 12-252 12-214 (303)
453 PRK00043 thiE thiamine-phospha 91.0 9.1 0.0002 32.9 13.5 42 153-194 147-189 (212)
454 PLN02826 dihydroorotate dehydr 90.9 1.8 3.9E-05 41.9 9.7 104 64-193 264-370 (409)
455 TIGR01858 tag_bisphos_ald clas 90.9 7.1 0.00015 35.8 13.1 110 174-285 153-279 (282)
456 cd02803 OYE_like_FMN_family Ol 90.8 1.9 4.1E-05 40.1 9.6 41 152-192 268-310 (327)
457 PRK10605 N-ethylmaleimide redu 90.8 2.2 4.7E-05 40.6 10.1 38 155-192 282-320 (362)
458 TIGR01361 DAHP_synth_Bsub phos 90.7 12 0.00027 33.8 14.7 46 151-196 180-232 (260)
459 TIGR02317 prpB methylisocitrat 90.7 3.1 6.8E-05 38.2 10.7 84 165-250 12-109 (285)
460 COG0167 PyrD Dihydroorotate de 90.7 2.1 4.5E-05 39.8 9.5 106 64-194 163-271 (310)
461 PF01680 SOR_SNZ: SOR/SNZ fami 90.7 1.2 2.5E-05 37.9 7.1 83 153-246 59-142 (208)
462 cd04737 LOX_like_FMN L-Lactate 90.7 2.2 4.8E-05 40.4 9.9 90 153-248 114-248 (351)
463 PRK13307 bifunctional formalde 90.6 8 0.00017 37.2 13.7 88 154-250 214-307 (391)
464 PTZ00411 transaldolase-like pr 90.6 3.3 7.1E-05 38.9 10.8 100 153-256 146-262 (333)
465 TIGR02708 L_lactate_ox L-lacta 90.5 2.6 5.7E-05 40.1 10.2 93 153-250 122-257 (367)
466 PRK12737 gatY tagatose-bisphos 90.3 8.6 0.00019 35.3 13.2 109 175-285 156-281 (284)
467 cd04734 OYE_like_3_FMN Old yel 90.3 4.5 9.8E-05 38.1 11.7 41 152-192 272-314 (343)
468 cd00953 KDG_aldolase KDG (2-ke 90.2 3.1 6.8E-05 38.0 10.3 91 178-273 25-120 (279)
469 PRK07998 gatY putative fructos 90.2 1.4 3E-05 40.5 7.8 44 150-193 184-229 (283)
470 PRK05437 isopentenyl pyrophosp 90.1 3.9 8.4E-05 38.8 11.1 99 149-250 104-218 (352)
471 PRK00311 panB 3-methyl-2-oxobu 90.1 12 0.00026 34.0 13.7 133 30-227 24-203 (264)
472 PF04309 G3P_antiterm: Glycero 90.1 0.69 1.5E-05 39.3 5.4 77 65-194 93-170 (175)
473 PF13714 PEP_mutase: Phosphoen 90.0 5.2 0.00011 35.8 11.3 84 165-251 8-107 (238)
474 cd02812 PcrB_like PcrB_like pr 90.0 0.8 1.7E-05 40.4 6.0 42 153-194 162-205 (219)
475 TIGR01521 FruBisAldo_II_B fruc 89.9 8.2 0.00018 36.5 12.8 111 174-285 171-324 (347)
476 cd00957 Transaldolase_TalAB Tr 89.9 3.8 8.3E-05 38.1 10.6 99 153-256 134-250 (313)
477 TIGR01768 GGGP-family geranylg 89.9 0.88 1.9E-05 40.2 6.1 43 152-194 165-209 (223)
478 TIGR03151 enACPred_II putative 89.8 3.4 7.3E-05 38.4 10.3 82 153-248 50-135 (307)
479 TIGR00874 talAB transaldolase. 89.8 4.3 9.3E-05 37.9 10.8 101 153-256 134-250 (317)
480 PRK13398 3-deoxy-7-phosphohept 89.6 7.1 0.00015 35.5 12.0 93 153-248 123-230 (266)
481 PRK12857 fructose-1,6-bisphosp 89.6 13 0.00029 34.1 13.8 109 175-285 156-281 (284)
482 COG2876 AroA 3-deoxy-D-arabino 89.6 3.6 7.9E-05 37.2 9.7 43 154-196 203-252 (286)
483 cd00947 TBP_aldolase_IIB Tagat 89.5 2.1 4.5E-05 39.2 8.4 45 149-193 180-226 (276)
484 TIGR01859 fruc_bis_ald_ fructo 89.5 2.5 5.5E-05 38.7 9.1 178 9-194 38-231 (282)
485 cd02932 OYE_YqiM_FMN Old yello 89.5 2.2 4.8E-05 40.0 8.9 40 153-192 278-319 (336)
486 PRK08745 ribulose-phosphate 3- 89.4 3 6.6E-05 36.9 9.2 40 154-193 155-199 (223)
487 cd04730 NPD_like 2-Nitropropan 89.4 6.3 0.00014 34.6 11.4 81 155-249 43-129 (236)
488 COG0176 MipB Transaldolase [Ca 89.3 16 0.00034 32.7 16.6 101 155-259 106-210 (239)
489 TIGR01740 pyrF orotidine 5'-ph 89.2 4.6 0.0001 35.3 10.2 33 222-254 159-201 (213)
490 TIGR00693 thiE thiamine-phosph 89.1 13 0.00028 31.6 12.9 43 152-194 138-181 (196)
491 TIGR02319 CPEP_Pphonmut carbox 89.1 2.3 5E-05 39.2 8.5 84 165-250 15-113 (294)
492 PRK12346 transaldolase A; Prov 89.1 5 0.00011 37.4 10.7 99 153-256 135-251 (316)
493 TIGR00167 cbbA ketose-bisphosp 89.1 2.1 4.5E-05 39.4 8.2 44 150-193 190-236 (288)
494 PRK13396 3-deoxy-7-phosphohept 88.9 8.6 0.00019 36.4 12.3 46 151-196 257-309 (352)
495 cd06557 KPHMT-like Ketopantoat 88.9 13 0.00029 33.5 13.1 116 82-248 25-177 (254)
496 PRK02615 thiamine-phosphate py 88.7 14 0.0003 35.0 13.6 44 151-194 280-323 (347)
497 cd00954 NAL N-Acetylneuraminic 88.6 19 0.00042 32.9 21.8 181 12-251 5-208 (288)
498 PRK04147 N-acetylneuraminate l 88.3 20 0.00044 32.8 22.9 178 12-250 8-208 (293)
499 PRK08999 hypothetical protein; 88.3 11 0.00023 34.8 12.6 44 151-194 266-309 (312)
500 COG2513 PrpB PEP phosphonomuta 88.3 5.6 0.00012 36.4 10.2 84 165-250 17-114 (289)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=3.6e-65 Score=450.29 Aligned_cols=304 Identities=71% Similarity=1.103 Sum_probs=289.2
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CCceEEeeecCCchHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDA 79 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~-~~~~~Ql~~~~d~~~~~ 79 (308)
+||++||.+++.||+|||.+.+.+.||+||...+++|.+.|+++++|+++++++||+...+| +..|||||.++|++.++
T Consensus 58 ~sTtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~ 137 (363)
T KOG0538|consen 58 TSTTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITE 137 (363)
T ss_pred ccceeccccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998876 58999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHH
Q 021739 80 QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKW 159 (308)
Q Consensus 80 ~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 159 (308)
+++++++++||++|++|+|+|+.|+|+.|++|.|..|+.++.++++.......++...++...+++...||..+|+.|+|
T Consensus 138 ~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~w 217 (363)
T KOG0538|consen 138 QLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKW 217 (363)
T ss_pred HHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHH
Confidence 99999999999999999999999999999999999999888888887766666665567778899999999999999999
Q ss_pred HHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHH
Q 021739 160 LQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL 239 (308)
Q Consensus 160 ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l 239 (308)
+|+.+++||++|++++.|+|+.+.++|+++|+||||||+|+|..+.+.+.|.++.+++.+++||+.+||+|++.|++|||
T Consensus 218 Lr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKAL 297 (363)
T KOG0538|consen 218 LRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKAL 297 (363)
T ss_pred HHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceeccCCCCcc
Q 021739 240 ALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGA 304 (308)
Q Consensus 240 ~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~ 304 (308)
++||.+|.+|||++|+++++|+.||+++++.+++|++..|...|+.|+.|+.++.+....+++++
T Consensus 298 ALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~~s~l~~ 362 (363)
T KOG0538|consen 298 ALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTEESRLKK 362 (363)
T ss_pred hcccceEEecCchheeeccccchhHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeechhhhcc
Confidence 99999999999999999999999999999999999999999999999999999987777666553
No 2
>PLN02979 glycolate oxidase
Probab=100.00 E-value=6.7e-60 Score=435.81 Aligned_cols=308 Identities=85% Similarity=1.266 Sum_probs=278.0
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQ 80 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~ 80 (308)
|+|++||++++.||++||+++.++.||++|.+++++|++.|+++++|+.++.++||+++..+++.|||+|++.|++.+.+
T Consensus 59 tst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~~wfQLY~~~Dr~~~~~ 138 (366)
T PLN02979 59 MTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQ 138 (366)
T ss_pred CceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCCeEEEEeecCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999997766689999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHH
Q 021739 81 LVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWL 160 (308)
Q Consensus 81 ~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 160 (308)
++++++++|+++|++|+|+|+.|+|++|+||+|..|.+++.++.........+.....+...++....|+..+|+.|+++
T Consensus 139 ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wl 218 (366)
T PLN02979 139 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 218 (366)
T ss_pred HHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999976654444321111111111223344555567899999999999
Q ss_pred HHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH
Q 021739 161 QTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 240 (308)
Q Consensus 161 r~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~ 240 (308)
|+.+++||++|++.+.++++++.++|+|+|+|+||||++.++.+++...|.++++.+.+++|||++|||+++.|++|+|+
T Consensus 219 r~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALA 298 (366)
T PLN02979 219 QTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 298 (366)
T ss_pred HhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999888766899999999999999999999
Q ss_pred cCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceeccCCCCccccCC
Q 021739 241 LGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 308 (308)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~ 308 (308)
+|||+|++|||+++++...|++++.++++.+++||+..|..+|++++.++++..+...++.|+--+||
T Consensus 299 LGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~~~~~~~ 366 (366)
T PLN02979 299 LGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 366 (366)
T ss_pred cCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhccccccCC
Confidence 99999999999999988899999999999999999999999999999999999998888888888876
No 3
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=1.4e-59 Score=437.21 Aligned_cols=308 Identities=85% Similarity=1.266 Sum_probs=276.4
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQ 80 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~ 80 (308)
|+|++||++++.||++||+++.++.||++|..++++|++.|+++++|+.+++++||+++..+++.|||||+..|++.+.+
T Consensus 60 ~~t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~ 139 (367)
T PLN02493 60 MTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQ 139 (367)
T ss_pred CceEECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998755689999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHH
Q 021739 81 LVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWL 160 (308)
Q Consensus 81 ~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 160 (308)
++++++++|+++|++|+|+|+.|+|++|+||+|..|.++..++...............+...++....|+.++|+.|+++
T Consensus 140 li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wl 219 (367)
T PLN02493 140 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 219 (367)
T ss_pred HHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999876554433221100001011223334555567899999999999
Q ss_pred HHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH
Q 021739 161 QTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 240 (308)
Q Consensus 161 r~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~ 240 (308)
|+.+++||++|++.+.++++++.++|+|+|+|+||||++.++.+++...|.++++.+.+++|||++|||+++.|++|+|+
T Consensus 220 r~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALA 299 (367)
T PLN02493 220 QTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 299 (367)
T ss_pred HhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888767899999999999999999999
Q ss_pred cCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceeccCCCCccccCC
Q 021739 241 LGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 308 (308)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~ 308 (308)
+||++|++|||+++++...|++++.++++.+++|++..|..+|++++.++++..+...++.|+--+||
T Consensus 300 LGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~~~~~~~~~~ 367 (367)
T PLN02493 300 LGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 367 (367)
T ss_pred cCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhccCcccCC
Confidence 99999999999999998899999999999999999999999999999999999888888778877775
No 4
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.7e-56 Score=416.31 Aligned_cols=288 Identities=42% Similarity=0.684 Sum_probs=257.4
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQ 80 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~ 80 (308)
|+|++||++++.||+|||++..++.||++|.+++++|.+.|+++++|+++++++||+++..+++.|||||+. |++.+++
T Consensus 54 ~~ttllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ 132 (361)
T cd04736 54 ISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAEL 132 (361)
T ss_pred CceeECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987667899999975 7999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccc-------------cccC---CCCCC---chhh
Q 021739 81 LVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------------IGKM---DKTDD---SGLA 141 (308)
Q Consensus 81 ~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~-------------~~~~---~~~~~---~~~~ 141 (308)
++++++++||++|++|+|+|+.|+|++|+||+|..|.++..+++.+.- ...+ ..... ....
T Consensus 133 ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (361)
T cd04736 133 LVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQA 212 (361)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHH
Confidence 999999999999999999999999999999999999766554422100 0000 00000 1123
Q ss_pred hHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCC
Q 021739 142 SYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRV 221 (308)
Q Consensus 142 ~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 221 (308)
.++..++|+.++|+.|++||+.++.|+++|++.+.++++++.++|+|+|.++||||++++..+++.+.|.++++.+ ++
T Consensus 213 ~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~ 290 (361)
T cd04736 213 ALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YK 290 (361)
T ss_pred HHHHhccCCcCCHHHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CC
Confidence 3444468899999999999999999999999999999999999999999999999999998888999999998876 59
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhc
Q 021739 222 PVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 291 (308)
Q Consensus 222 pvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~ 291 (308)
|||++|||+++.|++|+|++||++|++|||++++++..|++++.++++.+++||+..|..+|+++++|++
T Consensus 291 ~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 291 PVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence 9999999999999999999999999999999999888999999999999999999999999999999985
No 5
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=1.4e-56 Score=419.78 Aligned_cols=295 Identities=45% Similarity=0.724 Sum_probs=261.1
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQ 80 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~ 80 (308)
|+|+|||++++.||++|||+++++.||++|..++++|++.|+++++|++++.++|++++..+++.|||+|.+.|++.+.+
T Consensus 48 ~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~ 127 (356)
T PF01070_consen 48 TSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRD 127 (356)
T ss_dssp SSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHH
T ss_pred CCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998766789999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccc------------cCC-CCCCchhhhHhhhh
Q 021739 81 LVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIG------------KMD-KTDDSGLASYVANQ 147 (308)
Q Consensus 81 ~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~ 147 (308)
++++++++|++++.+|+|+|+.++|++|.|++|..|.+++.+++.+.-.. ... .......+.+.+..
T Consensus 128 ~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (356)
T PF01070_consen 128 LIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQ 207 (356)
T ss_dssp HHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCH
T ss_pred HHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHh
Confidence 99999999999999999999999999999999999987765554321100 000 11123445677777
Q ss_pred cccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEec
Q 021739 148 IDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 227 (308)
Q Consensus 148 ~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (308)
.|+.++|+.|+++++.+++||++|+++++++++++.++|+|+|.|+|||||++++++++.+.|.+++++++.++|||++|
T Consensus 208 ~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dg 287 (356)
T PF01070_consen 208 FDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADG 287 (356)
T ss_dssp B-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEES
T ss_pred cCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999887789999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccce
Q 021739 228 GVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 295 (308)
Q Consensus 228 GI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~ 295 (308)
|||++.|++|++++||++|++|||+++++..+|++++.++++.|++||+..|..+|++++.||+++.+
T Consensus 288 Gir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~ 355 (356)
T PF01070_consen 288 GIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVLEILKEELKRAMFLLGARSIAELRRSLL 355 (356)
T ss_dssp S--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGE
T ss_pred CCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhc
Confidence 99999999999999999999999999998889999999999999999999999999999999998876
No 6
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-56 Score=418.32 Aligned_cols=296 Identities=36% Similarity=0.642 Sum_probs=261.6
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQ 80 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~ 80 (308)
|+|++||++++.||++||+++.++.||++|..++++|.+.|+++++|+.++.++||+++..+++.|||||++.|++.+.+
T Consensus 60 ~~t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~ 139 (381)
T PRK11197 60 LETTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRN 139 (381)
T ss_pred CceEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999997765689999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccc-c----------------ccccCCC----CCC-c
Q 021739 81 LVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEG-L----------------YIGKMDK----TDD-S 138 (308)
Q Consensus 81 ~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~-~----------------~~~~~~~----~~~-~ 138 (308)
++++++++|+++|++|+|+|+.|+|++|+||+|..|.. ..+++.. + ....... ..+ .
T Consensus 140 li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~ 218 (381)
T PRK11197 140 ALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLE 218 (381)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchh
Confidence 99999999999999999999999999999999998842 2222111 0 0001000 000 1
Q ss_pred hhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHcc
Q 021739 139 GLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK 218 (308)
Q Consensus 139 ~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 218 (308)
....++...+|+.++|+.|++||+.++.||++|++.+.++++.+.++|+|+|+|+||||++.+..+++...|.++++.+.
T Consensus 219 ~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~ 298 (381)
T PRK11197 219 DYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVK 298 (381)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhc
Confidence 11224445578899999999999999999999999999999999999999999999999999888889999999988776
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceec
Q 021739 219 GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 297 (308)
Q Consensus 219 ~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~~~ 297 (308)
.++|||++|||+++.|+.|+|++||++|++||||++++...|++++.++++.+++||+..|..+|++++.||++..+..
T Consensus 299 ~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~ 377 (381)
T PRK11197 299 GDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQ 377 (381)
T ss_pred CCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcc
Confidence 6799999999999999999999999999999999999988999999999999999999999999999999999887643
No 7
>PLN02535 glycolate oxidase
Probab=100.00 E-value=2.6e-56 Score=415.98 Aligned_cols=296 Identities=65% Similarity=1.007 Sum_probs=263.9
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQ 80 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~ 80 (308)
|+|++||++++.||+|||+++.++.||++|.+++++|.+.|+++++|+.+++++||+++..+++.|||||++.|++.+.+
T Consensus 62 ~~t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ 141 (364)
T PLN02535 62 MSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQ 141 (364)
T ss_pred CceEECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999997756689999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHH
Q 021739 81 LVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWL 160 (308)
Q Consensus 81 ~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 160 (308)
++++++++|+++|++|+|+|+.|+|++|+||+|..|. .+++............+.....++...+|+.++|+.|+++
T Consensus 142 ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~l 218 (364)
T PLN02535 142 LVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWL 218 (364)
T ss_pred HHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999883 1222211000011111223344555567899999999999
Q ss_pred HHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH
Q 021739 161 QTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 240 (308)
Q Consensus 161 r~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~ 240 (308)
|+.+++||++|++.++++++.+.++|+|+|+++||||++.+.++++...|.++++.+..++|||++|||+++.|++|+|+
T Consensus 219 r~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALa 298 (364)
T PLN02535 219 RSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA 298 (364)
T ss_pred HhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999889999999999887766799999999999999999999
Q ss_pred cCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceeccC
Q 021739 241 LGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHW 299 (308)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~ 299 (308)
+||++|++|||+++++...|++++.+.++.+++||+..|..+|+.++.|+++..+...-
T Consensus 299 lGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~ 357 (364)
T PLN02535 299 LGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTER 357 (364)
T ss_pred cCCCEEEECHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchH
Confidence 99999999999999988889999999999999999999999999999999988775443
No 8
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=4.1e-56 Score=414.55 Aligned_cols=292 Identities=36% Similarity=0.585 Sum_probs=259.3
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccC-CCCceEEeeecCCchHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRNVDA 79 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~-~~~~~~Ql~~~~d~~~~~ 79 (308)
|+|++||++++.||+|||+++.++.||++|..++++|.+.|+++++|+.++.++||+++.. +++.|||||+..|++.+.
T Consensus 70 ~~t~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~ 149 (367)
T TIGR02708 70 TEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINR 149 (367)
T ss_pred CceeeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999773 458999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHH
Q 021739 80 QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKW 159 (308)
Q Consensus 80 ~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 159 (308)
+++++++++|+++|++|+|+|+.|+|++|+|++|.+|.+....+ ..+....+... ..+....++.++|+.|++
T Consensus 150 ~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~w~~i~~ 222 (367)
T TIGR02708 150 DIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQ------EYLPTGAGKSM-DNVYKSAKQKLSPRDIEE 222 (367)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhh------hhcccCCccch-hhhccccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999885332111 00100000000 111222467889999999
Q ss_pred HHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHH
Q 021739 160 LQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL 239 (308)
Q Consensus 160 ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l 239 (308)
+++.+++||++|++.+.++++.+.++|+|+|.|+||||++++..+++++.|.++++++.+++|||++|||+++.|++|+|
T Consensus 223 l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaL 302 (367)
T TIGR02708 223 IAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKAL 302 (367)
T ss_pred HHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988876679999999999999999999
Q ss_pred HcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceeccC
Q 021739 240 ALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHW 299 (308)
Q Consensus 240 ~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~ 299 (308)
++||++|++|||++++++..|++++.++++.+++||+..|..+|++++.||++..+...+
T Consensus 303 alGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~ 362 (367)
T TIGR02708 303 ASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNP 362 (367)
T ss_pred HcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccCC
Confidence 999999999999999988899999999999999999999999999999999998875443
No 9
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=5.8e-55 Score=409.35 Aligned_cols=293 Identities=39% Similarity=0.674 Sum_probs=256.3
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CCceEEeeecCCchHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDA 79 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~-~~~~~Ql~~~~d~~~~~ 79 (308)
|+|+|||++++.||+|||+++.++.||++|..++++|.+.|+++++|+++++++||+++..+ ++.|||||+..|++.+.
T Consensus 75 t~t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~ 154 (383)
T cd03332 75 LSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTE 154 (383)
T ss_pred CceeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999997743 58999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCc--ccccccc-c-c---cc--ccCCCC-----CCchhhhHhh
Q 021739 80 QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPH--LTLKNYE-G-L---YI--GKMDKT-----DDSGLASYVA 145 (308)
Q Consensus 80 ~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~--v~~~~~~-~-~---~~--~~~~~~-----~~~~~~~~~~ 145 (308)
+++++++++|+++|++|+|+|+.|+|++|+|++|. |.. .+..++. . . .. ...... .......+..
T Consensus 155 ~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (383)
T cd03332 155 SLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYL-PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVS 233 (383)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCC-CCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHH
Confidence 99999999999999999999999999999999994 531 1111100 0 0 00 000000 0012222333
Q ss_pred hhcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEE
Q 021739 146 NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 225 (308)
Q Consensus 146 ~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (308)
...|+.++|+.|+++++.+++||++|++.+.++++.+.++|+|+|+|+||||++.+.++++...|.++++++.+++||++
T Consensus 234 ~~~~~~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~ 313 (383)
T cd03332 234 VFSGPSLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLF 313 (383)
T ss_pred hcCCCCCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEE
Confidence 33688999999999999999999999999999999999999999999999999999999999999999988866799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021739 226 DGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 294 (308)
Q Consensus 226 ~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (308)
+|||+++.|++|+|++||++|++||||++++...|++++.++++.+++||+..|..+|++++.||++..
T Consensus 314 dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~ 382 (383)
T cd03332 314 DSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDA 382 (383)
T ss_pred eCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCccc
Confidence 999999999999999999999999999999888999999999999999999999999999999998764
No 10
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1e-54 Score=404.78 Aligned_cols=289 Identities=41% Similarity=0.684 Sum_probs=257.8
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccC-CCCceEEeeecCCchHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRNVDA 79 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~-~~~~~~Ql~~~~d~~~~~ 79 (308)
|+|++||++++.||++|||++.++.||++|.+++++|.+.|+++++|+.++.++||+++.. +++.|||+|++.|++.+.
T Consensus 62 ~~t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~ 141 (351)
T cd04737 62 TSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNR 141 (351)
T ss_pred CceEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999876 458999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHH
Q 021739 80 QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKW 159 (308)
Q Consensus 80 ~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 159 (308)
+++++++++|+++|.+|+|+|+.|+|++|+|++|..|.+....+.. +.. ...+.+ ........++.++|+.+++
T Consensus 142 ~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~--~~~---~~~~~~-~~~~~~~~~~~~~~~~l~~ 215 (351)
T cd04737 142 SLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHF--SEG---TGKGKG-ISEIYAAAKQKLSPADIEF 215 (351)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhh--ccc---cccCcc-hhhhhhhccCCCCHHHHHH
Confidence 9999999999999999999999999999999999988543321111 000 000111 1112233577889999999
Q ss_pred HHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHH
Q 021739 160 LQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL 239 (308)
Q Consensus 160 ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l 239 (308)
+|+.+++||++|++.++++++.+.++|+|+|+++||||++++.++++++.|.++++++..++|||++|||+++.|++|+|
T Consensus 216 lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaL 295 (351)
T cd04737 216 IAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKAL 295 (351)
T ss_pred HHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999988889999999988876679999999999999999999
Q ss_pred HcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccce
Q 021739 240 ALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 295 (308)
Q Consensus 240 ~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~ 295 (308)
++||++|++||+++++++..|++++.++++.+++||+.+|..+|+++++|+++.++
T Consensus 296 alGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 296 ASGADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HcCCCEEEECHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 99999999999999999889999999999999999999999999999999987653
No 11
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=2e-52 Score=389.43 Aligned_cols=285 Identities=46% Similarity=0.720 Sum_probs=252.9
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhcc-CC-CCceEEeeecCCchHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSST-GP-GIRFFQLYVTKHRNVD 78 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~-~~-~~~~~Ql~~~~d~~~~ 78 (308)
|+|+|||++++.||+||||++.++.||++|.+++++|.+.|+++++|++++.++|++.+. .+ .+.|||||.+.|++.+
T Consensus 54 ~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~ 133 (344)
T cd02922 54 TSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKT 133 (344)
T ss_pred CceEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHH
Confidence 689999999999999999999988999999999999999999999999999999998866 34 4899999999999999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHH
Q 021739 79 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 158 (308)
Q Consensus 79 ~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 158 (308)
.+++++++++|+++|++|+|+|+.++|++|+|++|..|.+++..+... .....+...+.....|+..+|+.|+
T Consensus 134 ~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~ 206 (344)
T cd02922 134 EELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKT-------KAKGGGAGRAMSGFIDPTLTWDDIK 206 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCcccccccccc-------ccccchHHHHHhhccCCCCCHHHHH
Confidence 999999999999999999999999999999999999886543221100 0001122233333457788999999
Q ss_pred HHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc---cCCCeEEEecCCCCHHHH
Q 021739 159 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRRGTDV 235 (308)
Q Consensus 159 ~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~d~ 235 (308)
++++.+++||++|++.+.++++.+.++|+|+|+++||+|++.+..+++...|.++++.+ .+++|||++|||+++.|+
T Consensus 207 ~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv 286 (344)
T cd02922 207 WLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDV 286 (344)
T ss_pred HHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999888788888888887643 347999999999999999
Q ss_pred HHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021739 236 FKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 292 (308)
Q Consensus 236 ~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~ 292 (308)
+|+|++||++|++||||++++.+.|+++|.++++.+++||+.+|..+|++++++|++
T Consensus 287 ~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 287 LKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred HHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 999999999999999999999888999999999999999999999999999999975
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.3e-47 Score=351.37 Aligned_cols=296 Identities=41% Similarity=0.579 Sum_probs=264.8
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQ 80 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~ 80 (308)
|+|++||++++.||+||||+++++.|++++..-+++|..+|.+++.++++++++|+.....+ ||+|+..|++...+
T Consensus 54 lst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~ 129 (360)
T COG1304 54 LSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPN 129 (360)
T ss_pred cceEecCccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHH
Confidence 68999999999999999999999999999999999999999999999999999998875543 99997789999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccc-cc--cCC-CCCCchhhhHhhhhcccccCHHH
Q 021739 81 LVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-IG--KMD-KTDDSGLASYVANQIDRSLNWKD 156 (308)
Q Consensus 81 ~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~d~~~~~~~ 156 (308)
+++++.++|++.+++|+|.|+.++|+++.++.+..|...+..|+.+.. .+ ... ........++.....+|..+|+.
T Consensus 130 ~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked 209 (360)
T COG1304 130 LVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKED 209 (360)
T ss_pred HHHHHHhcCCcceeeccCccchHHHHHHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHH
Confidence 999999999999999999999999999999999999765544443210 00 000 00001234566666889999999
Q ss_pred HHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHH
Q 021739 157 VKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVF 236 (308)
Q Consensus 157 i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~ 236 (308)
+.++++.+..|+++|++.+++|+..+.+.|+|+|.++||+|+++|+++++.++|.++++++.++++|++|||||++.|++
T Consensus 210 ~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~ 289 (360)
T COG1304 210 GAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVA 289 (360)
T ss_pred HhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997789999999999999999
Q ss_pred HHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceeccCC
Q 021739 237 KALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWD 300 (308)
Q Consensus 237 k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~ 300 (308)
|||++||++|++|||+++++...|+++|.+.++.+++||+..|..+|+++|.||++..++..+.
T Consensus 290 KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~ 353 (360)
T COG1304 290 KALALGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGR 353 (360)
T ss_pred HHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeeccc
Confidence 9999999999999999999999999999999999999999999999999999999998887654
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=6.2e-44 Score=329.02 Aligned_cols=246 Identities=57% Similarity=0.917 Sum_probs=227.3
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHH
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQ 80 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~ 80 (308)
|+|+|||++++.||+++||++.+..+++++..++++|+++|+++++|+++..+++++.+..+.+.|+|+|...|++.+.+
T Consensus 54 ~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~ 133 (299)
T cd02809 54 TSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITED 133 (299)
T ss_pred CceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHH
Confidence 68999999999999999999887779999999999999999999999998889999987766789999996669999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHH
Q 021739 81 LVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWL 160 (308)
Q Consensus 81 ~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 160 (308)
+++++++.|+++|++|+|||..+.+ ..|+.++++
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~~~~----------------------------------------------~~~~~i~~l 167 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVLGRR----------------------------------------------LTWDDLAWL 167 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCC----------------------------------------------CCHHHHHHH
Confidence 9999999999999999999964210 356889999
Q ss_pred HHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH
Q 021739 161 QTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 240 (308)
Q Consensus 161 r~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~ 240 (308)
++.+++||++|++.+.++++.+.++|+|+|+++||||++.+++++++..+.++++.+..++|||++|||+++.|+.|+++
T Consensus 168 ~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~ 247 (299)
T cd02809 168 RSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA 247 (299)
T ss_pred HHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999887755799999999999999999999
Q ss_pred cCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021739 241 LGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 292 (308)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~ 292 (308)
+|||+|++||||++++.+.|.+++.++++.+++||+.+|..+|+++++||++
T Consensus 248 lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 248 LGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred cCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999988788999999999999999999999999999999963
No 14
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=2e-35 Score=277.23 Aligned_cols=259 Identities=24% Similarity=0.329 Sum_probs=205.5
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCC--C------HHHHhccCC-CCceEEeee
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS--S------VEEVSSTGP-GIRFFQLYV 71 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~--~------~e~i~~~~~-~~~~~Ql~~ 71 (308)
|||+|||++++.||+++||+|+.-...+.|..|+++|+++|+++++++++.. + ++.+++..| .|.+.+|+.
T Consensus 50 ~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~ 129 (352)
T PRK05437 50 LSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPELADSFSVVRKVAPDGLLFANLGA 129 (352)
T ss_pred ceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhhHHHHHHHHHHCCCceEEeecCc
Confidence 6899999999999999999987322234567899999999999999988521 1 222334444 367777765
Q ss_pred cCCchH-HHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhccc
Q 021739 72 TKHRNV-DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDR 150 (308)
Q Consensus 72 ~~d~~~-~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 150 (308)
...... .+.+.+.++..+++++.++++++.. .++++.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe----------------------------------------~~~p~g~~ 169 (352)
T PRK05437 130 VQLYGYGVEEAQRAVEMIEADALQIHLNPLQE----------------------------------------LVQPEGDR 169 (352)
T ss_pred cccCCCCHHHHHHHHHhcCCCcEEEeCccchh----------------------------------------hcCCCCcc
Confidence 433222 2223334555688899998865432 23333444
Q ss_pred ccC--HHHHHHHHHhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEecccccC------------------CCCCcchH
Q 021739 151 SLN--WKDVKWLQTITSLPILVKGV---LTAEDASLAIQYGAAGIIVSNHGARQ------------------LDYVPATV 207 (308)
Q Consensus 151 ~~~--~~~i~~ir~~~~~Pv~vK~~---~~~e~a~~~~~~G~d~i~v~~~gg~~------------------~~~~~~~~ 207 (308)
++. ++.++++++.+++||++|++ .+.++++.+.++|+|+|+++|+||+. .+++.++.
T Consensus 170 ~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~ 249 (352)
T PRK05437 170 DFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTA 249 (352)
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHH
Confidence 442 47899999999999999988 78999999999999999999988732 12456788
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCH
Q 021739 208 MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSL 287 (308)
Q Consensus 208 ~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i 287 (308)
..|.++++.. .++|||++|||+++.|+.|++++|||+|++||+|++++...|.+++.++++.+.+||+.+|..+|++++
T Consensus 250 ~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i 328 (352)
T PRK05437 250 QSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNI 328 (352)
T ss_pred HHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 8888887763 379999999999999999999999999999999999877789999999999999999999999999999
Q ss_pred hhhcccceeccCC
Q 021739 288 KEITRNHIVTHWD 300 (308)
Q Consensus 288 ~~l~~~~~~~~~~ 300 (308)
+||++.+++..++
T Consensus 329 ~eL~~~~~~~~~~ 341 (352)
T PRK05437 329 AELRKVPLVLSGE 341 (352)
T ss_pred HHhCCCCEEecHh
Confidence 9999999887765
No 15
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=1.1e-34 Score=269.91 Aligned_cols=247 Identities=27% Similarity=0.338 Sum_probs=193.5
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCC--C------HHHHhccCC-CCceEEeee
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS--S------VEEVSSTGP-GIRFFQLYV 71 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~--~------~e~i~~~~~-~~~~~Ql~~ 71 (308)
|||+|+|++++.|||++||+|+.....+.+..++++|++.|+++++++++.. . ++.+....+ .+.+.+++.
T Consensus 42 ~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~~~~~~vr~~~~~~p~~~Nl~~ 121 (326)
T cd02811 42 LSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELAESFTVVREAPPNGPLIANLGA 121 (326)
T ss_pred CeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhhhHHHHHHHhCCCceEEeecCc
Confidence 6899999999999999999987332333467899999999999999988421 1 223333344 366666664
Q ss_pred cC----CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhh
Q 021739 72 TK----HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQ 147 (308)
Q Consensus 72 ~~----d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (308)
.. +++...+.+ +..+++++.++++++.. ..+++
T Consensus 122 ~~~~~~~~~~~~~~i---~~~~adalel~l~~~q~----------------------------------------~~~~~ 158 (326)
T cd02811 122 VQLNGYGVEEARRAV---EMIEADALAIHLNPLQE----------------------------------------AVQPE 158 (326)
T ss_pred cccCCCCHHHHHHHH---HhcCCCcEEEeCcchHh----------------------------------------hcCCC
Confidence 33 455544444 44578889888865422 22333
Q ss_pred cccccC--HHHHHHHHHhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEecccccCC--------------------CC
Q 021739 148 IDRSLN--WKDVKWLQTITSLPILVKGV---LTAEDASLAIQYGAAGIIVSNHGARQL--------------------DY 202 (308)
Q Consensus 148 ~d~~~~--~~~i~~ir~~~~~Pv~vK~~---~~~e~a~~~~~~G~d~i~v~~~gg~~~--------------------~~ 202 (308)
.+.++. .+.|+++++.+++||++|.+ .+.++++.+.++|+|+|+++++||+.+ ++
T Consensus 159 ~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~ 238 (326)
T cd02811 159 GDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADW 238 (326)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccc
Confidence 344442 37799999999999999987 789999999999999999999877421 12
Q ss_pred CcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHc
Q 021739 203 VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALS 282 (308)
Q Consensus 203 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~ 282 (308)
+.++...+.++++.+. ++|||++|||+++.|+.|++++|||+|++||||++++.. |.+++.++++.+.+||+.+|..+
T Consensus 239 g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~~~ 316 (326)
T cd02811 239 GIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMFLT 316 (326)
T ss_pred cccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677888776653 799999999999999999999999999999999998765 99999999999999999999999
Q ss_pred CCCCHhhhcc
Q 021739 283 GCRSLKEITR 292 (308)
Q Consensus 283 G~~~i~~l~~ 292 (308)
|+++++||++
T Consensus 317 G~~si~el~~ 326 (326)
T cd02811 317 GAKNLAELKQ 326 (326)
T ss_pred CCCCHHHhcC
Confidence 9999999974
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=100.00 E-value=8.2e-35 Score=271.63 Aligned_cols=258 Identities=25% Similarity=0.329 Sum_probs=197.6
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCC--C------HHHHhccCC-CCceEEeee
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS--S------VEEVSSTGP-GIRFFQLYV 71 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~--~------~e~i~~~~~-~~~~~Ql~~ 71 (308)
|||+|||++++.||+++||+|+.......+..++++|++.|+++++++++.. . .+.+....+ .|.+.+++.
T Consensus 43 ~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~ 122 (333)
T TIGR02151 43 LTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREEAPNGPLIANIGA 122 (333)
T ss_pred CceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhHhHHHHHHHhCCCCcEEeecCc
Confidence 6899999999999999999987321233467899999999999999987521 1 122333233 366666653
Q ss_pred cCCch-HHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhccc
Q 021739 72 TKHRN-VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDR 150 (308)
Q Consensus 72 ~~d~~-~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 150 (308)
....+ ..++..+.++..+++++.++++|+.. ..+++.++
T Consensus 123 ~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------------------------------------~~~p~g~~ 162 (333)
T TIGR02151 123 PQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------------------------------------LVQPEGDR 162 (333)
T ss_pred hhhccccHHHHHHHHHHhcCCCEEEcCccccc----------------------------------------ccCCCCCc
Confidence 32211 12333344455678888888876532 23333454
Q ss_pred ccC--HHHHHHHHHhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEecccccCC------------------CCCcchH
Q 021739 151 SLN--WKDVKWLQTITSLPILVKGV---LTAEDASLAIQYGAAGIIVSNHGARQL------------------DYVPATV 207 (308)
Q Consensus 151 ~~~--~~~i~~ir~~~~~Pv~vK~~---~~~e~a~~~~~~G~d~i~v~~~gg~~~------------------~~~~~~~ 207 (308)
++. ++.++++++.+++||++|.+ .+.+.++.+.++|+|+|+++++||+.+ +++.++.
T Consensus 163 ~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~ 242 (333)
T TIGR02151 163 NFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTA 242 (333)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHH
Confidence 442 37899999999999999987 788999999999999999999887531 1244556
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCH
Q 021739 208 MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSL 287 (308)
Q Consensus 208 ~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i 287 (308)
+.+.++++ ...++|||++|||+++.|+.|++++|||+|++||+|+.+....|++++.++++.+.++|+.+|..+|++++
T Consensus 243 ~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i 321 (333)
T TIGR02151 243 ASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTI 321 (333)
T ss_pred HHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 67777765 22379999999999999999999999999999999999866689999999999999999999999999999
Q ss_pred hhhcccceeccC
Q 021739 288 KEITRNHIVTHW 299 (308)
Q Consensus 288 ~~l~~~~~~~~~ 299 (308)
+||++.++++.+
T Consensus 322 ~el~~~~~~~~~ 333 (333)
T TIGR02151 322 AELKKVPLVISG 333 (333)
T ss_pred HHHccCCeEecC
Confidence 999999887643
No 17
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.96 E-value=6.2e-28 Score=224.27 Aligned_cols=252 Identities=16% Similarity=0.138 Sum_probs=194.3
Q ss_pred eecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCC-H-----H--HHhccCC--CCceEEeeecC
Q 021739 4 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSS-V-----E--EVSSTGP--GIRFFQLYVTK 73 (308)
Q Consensus 4 ~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~-~-----e--~i~~~~~--~~~~~Ql~~~~ 73 (308)
+|.+..++.|+++|||+|. + |.++|+.|+++|+.+++|+|.+.. + . ......+ .+..+|++ ++
T Consensus 2 ~i~~~~~~~~~~lAPM~g~--t----d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGI--T----DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GS 74 (321)
T ss_pred ccCCccCCCCEEecCCCCC--C----cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CC
Confidence 3566788999999999987 7 779999999999999999984332 1 0 0111112 36679998 99
Q ss_pred CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccC
Q 021739 74 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 153 (308)
Q Consensus 74 d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 153 (308)
|++.+.+.++.+++.|++.|++|++||++ ++.. .+.++.++ .||+..
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~---------------~v~~----------------~g~Gs~ll--~~p~~~ 121 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK---------------KVNR----------------KLAGSALL--QYPDLV 121 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH---------------HHcC----------------CCcccHHh--cCHHHH
Confidence 99999999998888999999999999975 2221 12233444 378888
Q ss_pred HHHHHHHHHhcCCCEEEEecC--------CHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEE
Q 021739 154 WKDVKWLQTITSLPILVKGVL--------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 225 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~--------~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (308)
.++++++++.+++||++|++. ..+.++.+.++|+|+|++++....+...+...++.+.++++.+ ++|||+
T Consensus 122 ~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~ 199 (321)
T PRK10415 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIA 199 (321)
T ss_pred HHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEE
Confidence 999999999999999999862 1255788899999999998765445555667889999998876 799999
Q ss_pred ecCCCCHHHHHHHHH-cCCCEEEEchHHH-----Hhcc----cCC----HHHHHHHHHHHHHHHHHHHHHcCCC-CHhhh
Q 021739 226 DGGVRRGTDVFKALA-LGASGVFVGRPVP-----FSLA----VDG----EAGVRKVLQMLRDEFELTMALSGCR-SLKEI 290 (308)
Q Consensus 226 ~GGI~~~~d~~k~l~-~GAd~V~ig~~~l-----~~~~----~~G----~~~v~~~i~~l~~~l~~~m~~~G~~-~i~~l 290 (308)
+|||.|++|+.++++ .|||+||+||+++ +... ..| +...++.+..+.++++...+++|.. .+.++
T Consensus 200 nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (321)
T PRK10415 200 NGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA 279 (321)
T ss_pred eCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 999999999999997 6999999999554 3211 112 2235577888999999999988865 77888
Q ss_pred cccceec
Q 021739 291 TRNHIVT 297 (308)
Q Consensus 291 ~~~~~~~ 297 (308)
|++..+.
T Consensus 280 rk~~~~y 286 (321)
T PRK10415 280 RKHVSWY 286 (321)
T ss_pred HHHHHHH
Confidence 8875553
No 18
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.7e-28 Score=222.55 Aligned_cols=255 Identities=22% Similarity=0.253 Sum_probs=203.5
Q ss_pred ecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCC-ceeecCCCCC-CH-----HHHh---cc-CCCCceEEeeecC
Q 021739 5 VLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWATS-SV-----EEVS---ST-GPGIRFFQLYVTK 73 (308)
Q Consensus 5 ~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~-~~~~s~~~~~-~~-----e~i~---~~-~~~~~~~Ql~~~~ 73 (308)
+....+..++++|||++. + |.++++.++++|. .+++|+|.+. .+ +... .. .+.|..+||. ++
T Consensus 4 ~~~~~~~~~~~lAPM~gv--t----d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-gs 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGV--T----DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-GS 76 (323)
T ss_pred cccccccCcEEEecCCCC--c----cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-CC
Confidence 445667899999999997 7 7799999999999 9999999432 11 1111 11 1247899999 99
Q ss_pred CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccC
Q 021739 74 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 153 (308)
Q Consensus 74 d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 153 (308)
|++.+.+..+.+.+.|++.|+||++||++ +|+. .+.++.++ .+|+..
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~~----------------~g~Ga~Ll--~~p~lv 123 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVVK----------------GGAGAALL--KNPELL 123 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------HhcC----------------CCcchhhc--CCHHHH
Confidence 99999999999999999999999999986 4432 23455565 488889
Q ss_pred HHHHHHHHHhc-CCCEEEEecCC--------HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEE
Q 021739 154 WKDVKWLQTIT-SLPILVKGVLT--------AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 224 (308)
Q Consensus 154 ~~~i~~ir~~~-~~Pv~vK~~~~--------~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 224 (308)
.+.|+++++.+ ++||.||++.. .+.++.+.++|++.++|+++...+.+.++..|+.|.++++.++. +|||
T Consensus 124 ~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~-ipvi 202 (323)
T COG0042 124 AEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS-IPVI 202 (323)
T ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC-CeEE
Confidence 99999999999 59999999732 34688999999999999887665666778899999999998843 9999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEch-----HHHHhc---ccCCH---HHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021739 225 LDGGVRRGTDVFKALA-LGASGVFVGR-----PVPFSL---AVDGE---AGVRKVLQMLRDEFELTMALSGCRSLKEITR 292 (308)
Q Consensus 225 a~GGI~~~~d~~k~l~-~GAd~V~ig~-----~~l~~~---~~~G~---~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~ 292 (308)
++|+|.+++|+.++|+ .|+|+||+|| ||++.- ...|+ ....+..+.+..+++.+.++.|...+..+++
T Consensus 203 ~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~ 282 (323)
T COG0042 203 ANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRK 282 (323)
T ss_pred eCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999 6899999999 445431 12233 4567888899999999999999668888988
Q ss_pred cceeccCC
Q 021739 293 NHIVTHWD 300 (308)
Q Consensus 293 ~~~~~~~~ 300 (308)
+..+....
T Consensus 283 h~~~~~~~ 290 (323)
T COG0042 283 HLGYYLKG 290 (323)
T ss_pred HHHHHhhc
Confidence 86554433
No 19
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.95 E-value=1.2e-26 Score=214.36 Aligned_cols=244 Identities=18% Similarity=0.156 Sum_probs=179.0
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHcC-CceeecCCCCC--------CHHHHhc------cC--CCCceEEeeecCC
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAAG-TIMTLSSWATS--------SVEEVSS------TG--PGIRFFQLYVTKH 74 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g-~~~~~s~~~~~--------~~e~i~~------~~--~~~~~~Ql~~~~d 74 (308)
.|+++|||+|. + |.++|+.|+++| +.+++|+|.+. ....+.+ .. +.|..+||+ +.|
T Consensus 1 ~~~~lAPMag~--t----d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGV--L----DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCC--c----CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 48999999998 7 679999999999 89999999432 1111111 11 248999999 999
Q ss_pred chHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCH
Q 021739 75 RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 154 (308)
Q Consensus 75 ~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 154 (308)
++.+.+.++++++.|++.|+||++||++ +++. .+.++.++ .+|++..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~---------------~v~~----------------~g~Gs~Ll--~~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK---------------TVNG----------------SGGGATLL--KDPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch---------------HHhc----------------CCCchHhh--cCHHHHH
Confidence 9999999999999999999999999975 3321 12233444 3788889
Q ss_pred HHHHHHHHhc--CCCEEEEecCC-------HHHHHHHHHcCCcEEEEecccccCCCCCcc-hHHHHHHHHHHccCCCeEE
Q 021739 155 KDVKWLQTIT--SLPILVKGVLT-------AEDASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVF 224 (308)
Q Consensus 155 ~~i~~ir~~~--~~Pv~vK~~~~-------~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi 224 (308)
++++++++.+ ++||++|++.. .+.++.+.++|+|+|+|+++...+.+.+++ .|+.+.++++.+ ++|||
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 9999999987 49999998732 245788999999999998765545555554 788899998876 79999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEchHHH-----HhcccCCH--HHHHHHHHHHHHHHHHHHHHcCC-CCHhhhcccce
Q 021739 225 LDGGVRRGTDVFKALA-LGASGVFVGRPVP-----FSLAVDGE--AGVRKVLQMLRDEFELTMALSGC-RSLKEITRNHI 295 (308)
Q Consensus 225 a~GGI~~~~d~~k~l~-~GAd~V~ig~~~l-----~~~~~~G~--~~v~~~i~~l~~~l~~~m~~~G~-~~i~~l~~~~~ 295 (308)
++|||.|++|+.++++ .|||+||+||+++ +.....|. +...+.++.+.++++......+. ..+.++|+...
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~ 278 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLG 278 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 9999999999999997 6899999999554 43221221 22345555666666533333232 24666777644
Q ss_pred ec
Q 021739 296 VT 297 (308)
Q Consensus 296 ~~ 297 (308)
+.
T Consensus 279 ~y 280 (312)
T PRK10550 279 YL 280 (312)
T ss_pred HH
Confidence 43
No 20
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.95 E-value=7.6e-26 Score=208.93 Aligned_cols=237 Identities=20% Similarity=0.250 Sum_probs=176.1
Q ss_pred CceeecCcccCCceEeccc-cCcccCCCHHHHHHHHHHHHcCCceeecC---------------------C------CCC
Q 021739 1 MTTTVLGFNISMPIMIAPT-AFQKMAHPEGECATARAASAAGTIMTLSS---------------------W------ATS 52 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm-~~~~~~~~~~~~~~a~~a~~~g~~~~~s~---------------------~------~~~ 52 (308)
|+|+++|.++++||++||+ .+. + +..+++.+ +.|.+++++. + .+.
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~--~----~~~~~~~~-~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~ 73 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGS--G----VESLRRID-RSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNP 73 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCC--C----HHHHHHHH-HcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCc
Confidence 6899999999999999995 333 2 33455444 4588888771 1 011
Q ss_pred CHH----HHhcc-CC--CCceEEeeecCCchHHHHHHHHHHHc--CCcEEEEecCCCCCCcchHHhhhccCCCCcccccc
Q 021739 53 SVE----EVSST-GP--GIRFFQLYVTKHRNVDAQLVKRAERA--GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 123 (308)
Q Consensus 53 ~~e----~i~~~-~~--~~~~~Ql~~~~d~~~~~~~~~~~~~~--g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~ 123 (308)
..+ .+... .+ .|.++|++ +.+++.+.+.++.++++ +++++++|++||.... +
T Consensus 74 g~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~--------~---------- 134 (300)
T TIGR01037 74 GVEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKG--------G---------- 134 (300)
T ss_pred CHHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCC--------C----------
Confidence 122 22221 11 27899998 88999999999998876 3899999999997410 0
Q ss_pred ccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEeccc-cc
Q 021739 124 YEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVSNHG-AR 198 (308)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~----e~a~~~~~~G~d~i~v~~~g-g~ 198 (308)
+..+. .+++...+.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+. ++
T Consensus 135 -----------------g~~l~--~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~ 195 (300)
T TIGR01037 135 -----------------GIAIG--QDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGM 195 (300)
T ss_pred -----------------ccccc--cCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCcc
Confidence 11111 35667789999999999999999998553 44788999999999998742 21
Q ss_pred CC---------------CCCcc----hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccC
Q 021739 199 QL---------------DYVPA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD 259 (308)
Q Consensus 199 ~~---------------~~~~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~ 259 (308)
.. ..+++ .+..+.++++.+ ++|||++|||++++|+.+++.+|||+|++||++++.
T Consensus 196 ~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~---- 269 (300)
T TIGR01037 196 KIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR---- 269 (300)
T ss_pred ccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----
Confidence 10 01221 235566776665 699999999999999999999999999999999974
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 260 GEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 260 G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
+ .++..++++|+.+|+..|+++++|+++.
T Consensus 270 p-----~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 270 G-----FAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred c-----hHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 2 4788999999999999999999999864
No 21
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.94 E-value=4.2e-26 Score=211.22 Aligned_cols=242 Identities=17% Similarity=0.181 Sum_probs=176.9
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHcCC-ceeecCCCCC-C-----HHHHhccCC--CCceEEeeecCCchHHHHHH
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWATS-S-----VEEVSSTGP--GIRFFQLYVTKHRNVDAQLV 82 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~-~~~~s~~~~~-~-----~e~i~~~~~--~~~~~Ql~~~~d~~~~~~~~ 82 (308)
.|+++|||+|. + |.++|+.|+++|. .+++|+|.+. . .+++....+ .|..+||+ +.|++.+.+.+
T Consensus 1 ~~~~lAPM~g~--T----d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA 73 (318)
T TIGR00742 1 GRFSVAPMLDW--T----DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCA 73 (318)
T ss_pred CCEEEECCCCC--c----CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHH
Confidence 38999999998 7 6799999999998 7999999322 1 223333333 48899999 99999999999
Q ss_pred HHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHH
Q 021739 83 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 162 (308)
Q Consensus 83 ~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 162 (308)
+.+++.|+++|+||++||.. ++.. .+.+..++ .+|+...++++++++
T Consensus 74 ~~~~~~g~d~IDlN~GCP~~---------------~v~~----------------~g~Gs~Ll--~~p~~~~~iv~av~~ 120 (318)
T TIGR00742 74 KIAEKRGYDEINLNVGCPSD---------------RVQN----------------GNFGACLM--GNADLVADCVKAMQE 120 (318)
T ss_pred HHHHhCCCCEEEEECCCCHH---------------HhCC----------------CCeehHhh--cCHHHHHHHHHHHHH
Confidence 99999999999999999975 2211 12234454 378888999999999
Q ss_pred hcCCCEEEEecCC----------HHHHHHHHHcCCcEEEEecccc-cCCCC-------CcchHHHHHHHHHHccCCCeEE
Q 021739 163 ITSLPILVKGVLT----------AEDASLAIQYGAAGIIVSNHGA-RQLDY-------VPATVMALEEVVQAAKGRVPVF 224 (308)
Q Consensus 163 ~~~~Pv~vK~~~~----------~e~a~~~~~~G~d~i~v~~~gg-~~~~~-------~~~~~~~l~~i~~~~~~~ipvi 224 (308)
.+++||++|++.. .+.++.+.++|+|.|+++++.. .+... .+..|+.+.++++.+ .++|||
T Consensus 121 ~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~-~~ipVi 199 (318)
T TIGR00742 121 AVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDF-PHLTIE 199 (318)
T ss_pred HhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhC-CCCcEE
Confidence 9999999999742 1337888999999999977542 12111 223677888887765 269999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHH-----Hhcc----cCC---HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021739 225 LDGGVRRGTDVFKALALGASGVFVGRPVP-----FSLA----VDG---EAGVRKVLQMLRDEFELTMALSGCRSLKEITR 292 (308)
Q Consensus 225 a~GGI~~~~d~~k~l~~GAd~V~ig~~~l-----~~~~----~~G---~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~ 292 (308)
++|||+|.+|+.+++. |||+||+||+++ +.-. ..| .+...+.++.+.++++..... ...+.++|+
T Consensus 200 ~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~rk 276 (318)
T TIGR00742 200 INGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHITR 276 (318)
T ss_pred EECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHHH
Confidence 9999999999999996 999999999554 4211 111 123445666777777765443 246777777
Q ss_pred cceec
Q 021739 293 NHIVT 297 (308)
Q Consensus 293 ~~~~~ 297 (308)
+..+.
T Consensus 277 ~~~~y 281 (318)
T TIGR00742 277 HLLGL 281 (318)
T ss_pred HHHHH
Confidence 75544
No 22
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.94 E-value=1.8e-25 Score=208.08 Aligned_cols=247 Identities=21% Similarity=0.220 Sum_probs=185.1
Q ss_pred cCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCC-CCCH-------HHHhccCC--CCceEEeeecCCc
Q 021739 6 LGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWA-TSSV-------EEVSSTGP--GIRFFQLYVTKHR 75 (308)
Q Consensus 6 ~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~-~~~~-------e~i~~~~~--~~~~~Ql~~~~d~ 75 (308)
.+..++.|+++|||.+. + +.++|+.|+++|+.+++|+|. +..+ ..+....+ .|.++|+. +.++
T Consensus 2 ~~~~~~~~l~lAPm~~~--t----~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGV--T----DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDP 74 (319)
T ss_pred CCccCCCCEEecCCCCC--C----cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCH
Confidence 56788999999999987 6 669999999999999999883 2221 12222222 37889998 9999
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHH
Q 021739 76 NVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWK 155 (308)
Q Consensus 76 ~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 155 (308)
+.+.+.+++++++|+++|++|++||.. +++. .+.++.+. .++++..+
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~---------------~~~~----------------~~~Gs~l~--~~~~~~~e 121 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP---------------KITK----------------KGAGSALL--RDPDLIGK 121 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH---------------HhcC----------------CCccchHh--CCHHHHHH
Confidence 999999999999999999999999953 1110 11122332 36778889
Q ss_pred HHHHHHHhcCCCEEEEecC--------CHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEec
Q 021739 156 DVKWLQTITSLPILVKGVL--------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 227 (308)
Q Consensus 156 ~i~~ir~~~~~Pv~vK~~~--------~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (308)
+++++++.+++||++|++. ..+.++.+.++|+|+|+++++...+...++..++.+.++++.+ ++|||++|
T Consensus 122 i~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nG 199 (319)
T TIGR00737 122 IVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNG 199 (319)
T ss_pred HHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeC
Confidence 9999999999999999862 1356788999999999997654333334556788888888776 69999999
Q ss_pred CCCCHHHHHHHHH-cCCCEEEEchHHHHhc---------ccCC----HHHHHHHHHHHHHHHHHHHHHcCCC-CHhhhcc
Q 021739 228 GVRRGTDVFKALA-LGASGVFVGRPVPFSL---------AVDG----EAGVRKVLQMLRDEFELTMALSGCR-SLKEITR 292 (308)
Q Consensus 228 GI~~~~d~~k~l~-~GAd~V~ig~~~l~~~---------~~~G----~~~v~~~i~~l~~~l~~~m~~~G~~-~i~~l~~ 292 (308)
||++++|+.++++ .|||+||+||+++... ...| .....+.++.+.++++...+.+|.. .+..+++
T Consensus 200 gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~ 279 (319)
T TIGR00737 200 DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARK 279 (319)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 9999999999995 7899999999776431 0112 1234466777888888888877754 5666665
Q ss_pred cc
Q 021739 293 NH 294 (308)
Q Consensus 293 ~~ 294 (308)
+.
T Consensus 280 ~~ 281 (319)
T TIGR00737 280 HI 281 (319)
T ss_pred HH
Confidence 53
No 23
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.94 E-value=5.2e-25 Score=209.72 Aligned_cols=262 Identities=25% Similarity=0.258 Sum_probs=187.3
Q ss_pred ccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHHHHHHHHHc
Q 021739 9 NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERA 88 (308)
Q Consensus 9 ~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~~~~~~~~~ 88 (308)
.++.||+++||+++.+ .++...+++.++++.|....+++.. .+.+++.... ..+.|+- ...........+.
T Consensus 75 ~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~~--~~i~q~~-~~~fGv~~~~~~~---- 145 (392)
T cd02808 75 KLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGGG--DIIKQVA-SGRFGVRPEYLNK---- 145 (392)
T ss_pred ccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhhh--heEEEec-CCCCccCHHHccc----
Confidence 4689999999997754 4566789999999999998777644 5666665322 3455653 2222222222222
Q ss_pred CCcEEEEecCC---CCCCcchHHhhhccCCCC-ccccccccccccccCCCCCCchhhhHhhhhcccccC-----HHHHHH
Q 021739 89 GFKAIALTVDT---PRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN-----WKDVKW 159 (308)
Q Consensus 89 g~~~i~i~~~~---p~~~~r~~~~~~~~~~p~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~i~~ 159 (308)
++.|.+-++- |..| -.+|. ||+. +.+.. . ..+..++.++++.++++. .+.|++
T Consensus 146 -~~~ieik~~QGAkpg~g---------g~l~~~Kv~~---eiA~~----r-~~~~g~~~isp~~~~~~~~~~~l~~~I~~ 207 (392)
T cd02808 146 -ADAIEIKIGQGAKPGEG---------GHLPGEKVTE---EIAKI----R-GIPPGVDLISPPPHHDIYSIEDLAQLIED 207 (392)
T ss_pred -CcEEEEEeccCCCCCCC---------CccccccCCH---HHHHH----h-CCCCCccccCCCCCCCCCCHHHHHHHHHH
Confidence 5666666541 2111 11121 2321 10000 0 113446677887888875 677999
Q ss_pred HHHhcC-CCEEEEecC--CHHHHHHHHHcC-CcEEEEecccccC--------CCCCcchHHHHHHHHHHc-----cCCCe
Q 021739 160 LQTITS-LPILVKGVL--TAEDASLAIQYG-AAGIIVSNHGARQ--------LDYVPATVMALEEVVQAA-----KGRVP 222 (308)
Q Consensus 160 ir~~~~-~Pv~vK~~~--~~e~a~~~~~~G-~d~i~v~~~gg~~--------~~~~~~~~~~l~~i~~~~-----~~~ip 222 (308)
+|+.++ +||++|++. +.+++..+.+.| +|+|+++|++|.. .+++.|+...|.++++.+ +.++|
T Consensus 208 lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~ 287 (392)
T cd02808 208 LREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVS 287 (392)
T ss_pred HHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCe
Confidence 999987 999999986 466655555555 9999999985422 235678888888887654 24699
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccC-----------------------------CHHHHHHHHHHHHH
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-----------------------------GEAGVRKVLQMLRD 273 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~i~~l~~ 273 (308)
||++|||+++.|+.|++++|||+|.+||++++++.|. |.++|.++++.+.+
T Consensus 288 viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~ 367 (392)
T cd02808 288 LIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAE 367 (392)
T ss_pred EEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987543 67899999999999
Q ss_pred HHHHHHHHcCCCCHhhhcccceec
Q 021739 274 EFELTMALSGCRSLKEITRNHIVT 297 (308)
Q Consensus 274 ~l~~~m~~~G~~~i~~l~~~~~~~ 297 (308)
||+.+|..+|+++++++++.+++.
T Consensus 368 el~~~m~~~G~~~~~~l~~~~l~~ 391 (392)
T cd02808 368 ELRELAAALGKRSLELLGRSDLLA 391 (392)
T ss_pred HHHHHHHHhCCCChHHCCHHHhhc
Confidence 999999999999999999887754
No 24
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.94 E-value=1.9e-24 Score=199.37 Aligned_cols=237 Identities=16% Similarity=0.185 Sum_probs=176.7
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHh----ccCCCCceEEeeecCCch
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS----STGPGIRFFQLYVTKHRN 76 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~----~~~~~~~~~Ql~~~~d~~ 76 (308)
|||+|+|++++.|||+++|.. ..|..|+++|++.|.-.++-- ++.|+.. ...+..+++.+..+.+++
T Consensus 27 lst~~~~~~l~~P~~inAM~t------~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~~~r~~~~~~l~v~~~vg~~~~ 97 (326)
T PRK05458 27 TSVTLGPRTFKLPVVPANMQT------IIDEKIAEWLAENGYFYIMHR---FDPEARIPFIKDMHEQGLIASISVGVKDD 97 (326)
T ss_pred cceEECCcEecCcEEEecccc------hhHHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhccccccEEEEEecCCHH
Confidence 689999999999999999942 458899999999987766654 2444433 222333466666555555
Q ss_pred HHHHHHHHHHHcC--CcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCH
Q 021739 77 VDAQLVKRAERAG--FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 154 (308)
Q Consensus 77 ~~~~~~~~~~~~g--~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 154 (308)
..+++ +.+.++| +++|.|.+-. + +.....
T Consensus 98 ~~~~~-~~Lv~ag~~~d~i~iD~a~---------------------------------------g---------h~~~~~ 128 (326)
T PRK05458 98 EYDFV-DQLAAEGLTPEYITIDIAH---------------------------------------G---------HSDSVI 128 (326)
T ss_pred HHHHH-HHHHhcCCCCCEEEEECCC---------------------------------------C---------chHHHH
Confidence 55444 3445564 4887664311 1 111123
Q ss_pred HHHHHHHHhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCC------CCCcchH--HHHHHHHHHccCCCeEEE
Q 021739 155 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL------DYVPATV--MALEEVVQAAKGRVPVFL 225 (308)
Q Consensus 155 ~~i~~ir~~~~-~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~------~~~~~~~--~~l~~i~~~~~~~ipvia 225 (308)
+.|+++|+.++ .||++|.+.|.++++.+.++|+|++.+++++|+.. ..+.++| ..+.++++.+ ++|||+
T Consensus 129 e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIA 206 (326)
T PRK05458 129 NMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIA 206 (326)
T ss_pred HHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEEE
Confidence 67999999985 89999889999999999999999999999888541 1234544 4588887766 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHHHh------------------c-----cc-------CCHH-------HHHHHH
Q 021739 226 DGGVRRGTDVFKALALGASGVFVGRPVPFS------------------L-----AV-------DGEA-------GVRKVL 268 (308)
Q Consensus 226 ~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~------------------~-----~~-------~G~~-------~v~~~i 268 (308)
+|||+++.|+.|+|++|||+||+|++|+.. . .. +|.+ .+.+++
T Consensus 207 dGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l 286 (326)
T PRK05458 207 DGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTL 286 (326)
T ss_pred eCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHH
Confidence 999999999999999999999999999711 0 01 2333 488999
Q ss_pred HHHHHHHHHHHHHcCCCCHhhhcccceec
Q 021739 269 QMLRDEFELTMALSGCRSLKEITRNHIVT 297 (308)
Q Consensus 269 ~~l~~~l~~~m~~~G~~~i~~l~~~~~~~ 297 (308)
..+..+|+..|.++|++++.||++..++.
T Consensus 287 ~~l~~gLr~~m~~~Ga~~i~el~~~~~v~ 315 (326)
T PRK05458 287 TEMEQDLQSSISYAGGRDLDAIRKVDYVI 315 (326)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhcCCEEE
Confidence 99999999999999999999999875554
No 25
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.93 E-value=9.2e-26 Score=208.79 Aligned_cols=243 Identities=22% Similarity=0.272 Sum_probs=166.9
Q ss_pred EeccccCcccCCCHHHHHHHHHHHHcCCc-eeecCCCCC------C--HHHHhccCC--CCceEEeeecCCchHHHHHHH
Q 021739 15 MIAPTAFQKMAHPEGECATARAASAAGTI-MTLSSWATS------S--VEEVSSTGP--GIRFFQLYVTKHRNVDAQLVK 83 (308)
Q Consensus 15 ~iapm~~~~~~~~~~~~~~a~~a~~~g~~-~~~s~~~~~------~--~e~i~~~~~--~~~~~Ql~~~~d~~~~~~~~~ 83 (308)
++|||.+. + |.++|+.|+++|.. +++|+|.+. . ........+ .|..+||. ++|++.+.+.++
T Consensus 1 ~LAPM~g~--t----d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGV--T----DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTT--S----SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCC--c----hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 58999987 7 67999999999999 999998422 1 111112222 38999999 999999999999
Q ss_pred HHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHh
Q 021739 84 RAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTI 163 (308)
Q Consensus 84 ~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~ 163 (308)
.+.+.|++.|+||+|||.+ +++. .+.++.++ .||+...++++.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~---------------~v~~----------------~g~Ga~Ll--~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP---------------KVTK----------------GGAGAALL--KDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH---------------HHHH----------------CT-GGGGG--C-HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH---------------HHhc----------------CCcChhhh--cChHHhhHHHHhhhcc
Confidence 9888899999999999986 3321 23345555 3788888999999999
Q ss_pred cCCCEEEEecC--C------HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHH
Q 021739 164 TSLPILVKGVL--T------AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDV 235 (308)
Q Consensus 164 ~~~Pv~vK~~~--~------~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~ 235 (308)
+++||.+|++. . .+.++.+.++|+++|+|+++...+.+.++..|+.+.++++.+ ++|||++|||.|.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 99999999873 2 356899999999999998887777777788999999998887 6999999999999999
Q ss_pred HHHHH-cCCCEEEEch-----HHHHhc---ccCC----HHHHHHHHHHHHHHHHHHHHHcCCC-CHhhhcccceeccC
Q 021739 236 FKALA-LGASGVFVGR-----PVPFSL---AVDG----EAGVRKVLQMLRDEFELTMALSGCR-SLKEITRNHIVTHW 299 (308)
Q Consensus 236 ~k~l~-~GAd~V~ig~-----~~l~~~---~~~G----~~~v~~~i~~l~~~l~~~m~~~G~~-~i~~l~~~~~~~~~ 299 (308)
.+.+. .|+|+||+|| ||++.. ...| ...+.+.+..+.++++.....+|.. .+..++++..+...
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~ 276 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYFK 276 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCTT
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHc
Confidence 99998 4999999999 556541 1111 1125677788888888888888744 78888877655433
No 26
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.93 E-value=7.8e-24 Score=194.49 Aligned_cols=237 Identities=17% Similarity=0.187 Sum_probs=173.3
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHh----ccCCCCceEEeeecCCch
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS----STGPGIRFFQLYVTKHRN 76 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~----~~~~~~~~~Ql~~~~d~~ 76 (308)
|+|+|++++++.|||+++|.. ..|..|+++|+++|.-.++-.+ ++|+.. ...+...++.+-.+..++
T Consensus 24 lst~~~~~~l~~P~~inAM~t------~in~~LA~~a~~~G~~~i~hK~---~~E~~~sfvrk~k~~~L~v~~SvG~t~e 94 (321)
T TIGR01306 24 TSVTLGKHKFKLPVVPANMQT------IIDEKLAEQLAENGYFYIMHRF---DEESRIPFIKDMQERGLFASISVGVKAC 94 (321)
T ss_pred eeEEECCcEecCcEEeeccch------hhhHHHHHHHHHcCCEEEEecC---CHHHHHHHHHhccccccEEEEEcCCCHH
Confidence 689999999999999999942 4588999999999988877653 444322 222223355555555555
Q ss_pred HHHHHHHHHHHcC--CcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCH
Q 021739 77 VDAQLVKRAERAG--FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 154 (308)
Q Consensus 77 ~~~~~~~~~~~~g--~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 154 (308)
..+++.. +.++| .+.|.+.. . + + +....+
T Consensus 95 ~~~r~~~-lv~a~~~~d~i~~D~--a-h------------------------------------g---------~s~~~~ 125 (321)
T TIGR01306 95 EYEFVTQ-LAEEALTPEYITIDI--A-H------------------------------------G---------HSNSVI 125 (321)
T ss_pred HHHHHHH-HHhcCCCCCEEEEeC--c-c------------------------------------C---------chHHHH
Confidence 5554444 34445 46655432 1 1 1 223346
Q ss_pred HHHHHHHHhcCCCEEEE-ecCCHHHHHHHHHcCCcEEEEecccccCC--------CCCcchHHHHHHHHHHccCCCeEEE
Q 021739 155 KDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVSNHGARQL--------DYVPATVMALEEVVQAAKGRVPVFL 225 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK-~~~~~e~a~~~~~~G~d~i~v~~~gg~~~--------~~~~~~~~~l~~i~~~~~~~ipvia 225 (308)
+.|+++|+.++.|++++ .+.+.+.++.+.++|+|+|.+++++|+.. ....+...++.+++++. ++|||+
T Consensus 126 ~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pVIa 203 (321)
T TIGR01306 126 NMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIA 203 (321)
T ss_pred HHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeEEE
Confidence 78999999998885445 48999999999999999999997665421 11123456888888776 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------hcc---c-------CCH-------HHHHHHH
Q 021739 226 DGGVRRGTDVFKALALGASGVFVGRPVPF--------------------SLA---V-------DGE-------AGVRKVL 268 (308)
Q Consensus 226 ~GGI~~~~d~~k~l~~GAd~V~ig~~~l~--------------------~~~---~-------~G~-------~~v~~~i 268 (308)
+|||+++.|+.|+|++|||+||+||+|-- ++. . +|. -.+.+++
T Consensus 204 dGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~ 283 (321)
T TIGR01306 204 DGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSDTL 283 (321)
T ss_pred ECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCCHHHHH
Confidence 99999999999999999999999998831 110 0 110 1388999
Q ss_pred HHHHHHHHHHHHHcCCCCHhhhcccceec
Q 021739 269 QMLRDEFELTMALSGCRSLKEITRNHIVT 297 (308)
Q Consensus 269 ~~l~~~l~~~m~~~G~~~i~~l~~~~~~~ 297 (308)
..+..+||+.|.++|+++++||++..+++
T Consensus 284 ~~~~~glr~~~~~~G~~~l~~~~~~~~~~ 312 (321)
T TIGR01306 284 IEMQQDLQSSISYAGGKDLDSLRTVDYVI 312 (321)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHhhCCEEE
Confidence 99999999999999999999999876664
No 27
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.93 E-value=1.1e-23 Score=194.60 Aligned_cols=238 Identities=22% Similarity=0.251 Sum_probs=179.5
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCCC--------------------------C
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS--------------------------S 53 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~~--------------------------~ 53 (308)
|+|+++|.++++||++|+-... . +..+.+.+.+.|.++++. |.... .
T Consensus 2 l~~~~~G~~~~nPv~~aag~~~--~----~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g 75 (301)
T PRK07259 2 LSVELPGLKLKNPVMPASGTFG--F----GGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPG 75 (301)
T ss_pred CceEECCEECCCCcEECCcCCC--C----CHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcC
Confidence 6899999999999999983222 1 336677778888887764 32100 1
Q ss_pred H----HHHhcc---CCCCceEEeeecCCchHHHHHHHHHHHcC-CcEEEEecCCCCCCcchHHhhhccCCCCcccccccc
Q 021739 54 V----EEVSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAG-FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE 125 (308)
Q Consensus 54 ~----e~i~~~---~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g-~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~ 125 (308)
+ +++.+. ...+.++|+. +.+.+.+.+.+++++++| +++|++|+.||....
T Consensus 76 ~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~--------------------- 133 (301)
T PRK07259 76 VDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKH--------------------- 133 (301)
T ss_pred HHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCC---------------------
Confidence 1 222221 1237899998 888999999999999998 999999999995310
Q ss_pred ccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEeccc-ccC-
Q 021739 126 GLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVSNHG-ARQ- 199 (308)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~----e~a~~~~~~G~d~i~v~~~g-g~~- 199 (308)
+ +..+. .++++..+.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+. +..
T Consensus 134 -------------g-g~~~~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~ 197 (301)
T PRK07259 134 -------------G-GMAFG--TDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAI 197 (301)
T ss_pred -------------C-ccccc--cCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEcccccccc
Confidence 0 00111 25667789999999999999999998654 34788999999999987742 110
Q ss_pred --------------CCCC----cchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCH
Q 021739 200 --------------LDYV----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGE 261 (308)
Q Consensus 200 --------------~~~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~ 261 (308)
...+ +..+..+.++++.+ ++|||++|||++++|+.+++++|||+|++||++++. +
T Consensus 198 ~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~-----P 270 (301)
T PRK07259 198 DIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYD-----P 270 (301)
T ss_pred ccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcC-----c
Confidence 0011 12456777777766 799999999999999999999999999999999963 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 262 AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 262 ~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
.++..++++++.+|+..|+++++++++.
T Consensus 271 ----~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 271 ----YAFPKIIEGLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 5788999999999999999999999864
No 28
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.93 E-value=6.6e-24 Score=198.26 Aligned_cols=245 Identities=19% Similarity=0.179 Sum_probs=178.4
Q ss_pred ccCCceEeccccCcccCCCHHHHHHHHHHHHcCC-ceeecCCCCC------CHHHHhccCC--CCceEEeeecCCchHHH
Q 021739 9 NISMPIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWATS------SVEEVSSTGP--GIRFFQLYVTKHRNVDA 79 (308)
Q Consensus 9 ~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~-~~~~s~~~~~------~~e~i~~~~~--~~~~~Ql~~~~d~~~~~ 79 (308)
....|+++|||+|. + |.++|+.|+++|. .+++|+|.+. ....+....+ .+..+||+ +.|++.+.
T Consensus 8 ~~~~~~~lAPM~g~--t----d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~ 80 (333)
T PRK11815 8 LPSRRFSVAPMMDW--T----DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPADLA 80 (333)
T ss_pred CCCCCEEEeCCCCC--c----CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHHHH
Confidence 45679999999998 7 6699999999997 7899998322 1122222223 48999999 99999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHH
Q 021739 80 QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKW 159 (308)
Q Consensus 80 ~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 159 (308)
+.++++++.|+++|+||++||.. ++.. .+.+..+. .++++..+++++
T Consensus 81 ~aA~~~~~~g~d~IdlN~gCP~~---------------~v~~----------------~~~Gs~L~--~~p~~~~eiv~a 127 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSD---------------RVQN----------------GRFGACLM--AEPELVADCVKA 127 (333)
T ss_pred HHHHHHHhcCCCEEEEcCCCCHH---------------HccC----------------CCeeeHHh--cCHHHHHHHHHH
Confidence 99999999999999999999975 1110 11122333 378888999999
Q ss_pred HHHhcCCCEEEEecCC----------HHHHHHHHHcCCcEEEEecccc-cCCCC-------CcchHHHHHHHHHHccCCC
Q 021739 160 LQTITSLPILVKGVLT----------AEDASLAIQYGAAGIIVSNHGA-RQLDY-------VPATVMALEEVVQAAKGRV 221 (308)
Q Consensus 160 ir~~~~~Pv~vK~~~~----------~e~a~~~~~~G~d~i~v~~~gg-~~~~~-------~~~~~~~l~~i~~~~~~~i 221 (308)
+++.+++||.+|++.. .+.++.+.++|+|+|+++++.+ .+... .+..++.+.++++.+ .++
T Consensus 128 vr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~i 206 (333)
T PRK11815 128 MKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF-PHL 206 (333)
T ss_pred HHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC-CCC
Confidence 9999999999998531 2446888999999999986432 11111 234577888887653 269
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhc-----c---cCCH----HHHHHHHHHHHHHHHHHHHHcCCCCHhh
Q 021739 222 PVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL-----A---VDGE----AGVRKVLQMLRDEFELTMALSGCRSLKE 289 (308)
Q Consensus 222 pvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~-----~---~~G~----~~v~~~i~~l~~~l~~~m~~~G~~~i~~ 289 (308)
|||++|||++++|+.++++ |||+||+||+++... . ..|. ....+.+..+.++++..... |. .+..
T Consensus 207 PVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 283 (333)
T PRK11815 207 TIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLNH 283 (333)
T ss_pred eEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHHH
Confidence 9999999999999999987 799999999776431 0 1121 23456677777777777663 54 5777
Q ss_pred hcccceec
Q 021739 290 ITRNHIVT 297 (308)
Q Consensus 290 l~~~~~~~ 297 (308)
+|++..+.
T Consensus 284 ~rk~~~~y 291 (333)
T PRK11815 284 ITRHMLGL 291 (333)
T ss_pred HHHHHHHH
Confidence 77765443
No 29
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.92 E-value=3e-23 Score=191.27 Aligned_cols=237 Identities=20% Similarity=0.217 Sum_probs=176.2
Q ss_pred ceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCC-CCC--------------------------C-
Q 021739 2 TTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW-ATS--------------------------S- 53 (308)
Q Consensus 2 ~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~-~~~--------------------------~- 53 (308)
+|+++|.++++||++|+-.. . ....+++.+...|.+++++.. +.. .
T Consensus 1 ~~~~~G~~~~nP~~~aag~~-----~-~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILASGTF-----G-FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECCCCC-----C-CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 58999999999999995211 1 134566666655588877643 111 0
Q ss_pred ---HHHHhcc---CCCCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCcccccccccc
Q 021739 54 ---VEEVSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGL 127 (308)
Q Consensus 54 ---~e~i~~~---~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~ 127 (308)
++++.+. ...+.++|+. +.+.+...+.+++++++|+++|++|+.||....+
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~---------------------- 131 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGG---------------------- 131 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC----------------------
Confidence 1222221 1237899998 8888999999999999999999999999964110
Q ss_pred ccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEeccc-ccC---
Q 021739 128 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVSNHG-ARQ--- 199 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~----e~a~~~~~~G~d~i~v~~~g-g~~--- 199 (308)
...+. .++++..+.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+. +..
T Consensus 132 ------------g~~~~---~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 132 ------------GMAFG---TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred ------------ccccc---CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 00111 25566678999999988999999987543 45788999999999998742 110
Q ss_pred ------------CCCCc----chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHH
Q 021739 200 ------------LDYVP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAG 263 (308)
Q Consensus 200 ------------~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~ 263 (308)
...++ ..+..+.++++.+ ++|||++|||++++|+.+++++|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~-----p-- 267 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVD-----P-- 267 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcC-----h--
Confidence 01111 1346677777766 799999999999999999999999999999999863 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 264 VRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 264 v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
.++..+++++.++|+..|+++++|+++.
T Consensus 268 --~~~~~i~~~l~~~~~~~g~~~~~~~~g~ 295 (296)
T cd04740 268 --EAFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4778999999999999999999999863
No 30
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.92 E-value=3.6e-23 Score=192.78 Aligned_cols=238 Identities=18% Similarity=0.207 Sum_probs=171.8
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCCC---------------------------
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS--------------------------- 52 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~~--------------------------- 52 (308)
|+|+++|.++++||++|+-+.+ . +....+.+.+.|.+.+++ |....
T Consensus 2 L~v~~~Gl~l~nPv~~ASg~~~--~----~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in 75 (325)
T cd04739 2 LSTTYLGLSLKNPLVASASPLS--R----NLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFP 75 (325)
T ss_pred ceEEECCEecCCCCEeCCcCCC--C----CHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccc
Confidence 6899999999999999764332 1 224444477788776664 21100
Q ss_pred -------C----HHHHhcc---CCCCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCc
Q 021739 53 -------S----VEEVSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPH 118 (308)
Q Consensus 53 -------~----~e~i~~~---~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~ 118 (308)
. ++++.+. ...|.++|+. +.+.+.+.++++.+++.|++++++|+.||... | +
T Consensus 76 ~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~-~ 141 (325)
T cd04739 76 EYGRYNLGPEEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTD------------P-D 141 (325)
T ss_pred cccccCcCHHHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-C
Confidence 0 1122221 1236788987 77788888899999999999999999985220 0 0
Q ss_pred cccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCC----HHHHHHHHHcCCcEEEEec
Q 021739 119 LTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 119 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~----~e~a~~~~~~G~d~i~v~~ 194 (308)
.. +.. .++...+.++++++.+++||++|+..+ .+.++.+.++|+|+|+++|
T Consensus 142 ~~----------------g~~---------~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 142 IS----------------GAE---------VEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred cc----------------cch---------HHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEc
Confidence 00 000 012345789999999999999998754 3568889999999999999
Q ss_pred ccc-cCCC------------CCc----chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcc
Q 021739 195 HGA-RQLD------------YVP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 257 (308)
Q Consensus 195 ~gg-~~~~------------~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~ 257 (308)
+.. ...+ +++ ..+..+.++++.+ ++|||++|||+|++|+.+++.+|||+|++||++++.
T Consensus 197 t~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~-- 272 (325)
T cd04739 197 RFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH-- 272 (325)
T ss_pred CcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc--
Confidence 641 1111 111 1244556665544 799999999999999999999999999999999973
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 258 VDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 258 ~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
|+ .++..+.++|+.+|...|+++++|+++.
T Consensus 273 --gp----~~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 273 --GP----DYIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred --Cc----hHHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 66 4788999999999999999999999985
No 31
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.91 E-value=4e-23 Score=193.45 Aligned_cols=239 Identities=18% Similarity=0.172 Sum_probs=171.4
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCC----------------------------
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWAT---------------------------- 51 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~---------------------------- 51 (308)
|+|+++|.++++||++|+-+.+ . +....+.+.+.|.+.+++ |...
T Consensus 3 l~~~~~Gl~l~nPv~~asg~~~--~----~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (334)
T PRK07565 3 LSTTYLGLTLRNPLVASASPLS--E----SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYF 76 (334)
T ss_pred ceEEECCEecCCCCEecCcCCC--C----CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhh
Confidence 6899999999999999885443 1 223344477788776664 2110
Q ss_pred -------CCHHH----Hhcc---CCCCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCC
Q 021739 52 -------SSVEE----VSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 117 (308)
Q Consensus 52 -------~~~e~----i~~~---~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~ 117 (308)
..+++ +... ...+.+.|+. +.+.+...+++++++++|++++.+|+.||...
T Consensus 77 n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~-g~~~~e~~~~a~~~~~agad~ielN~scpp~~-------------- 141 (334)
T PRK07565 77 PEPAKFYVGPEEYLELIRRAKEAVDIPVIASLN-GSSAGGWVDYARQIEQAGADALELNIYYLPTD-------------- 141 (334)
T ss_pred hhhhccCcCHHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC--------------
Confidence 01111 1111 1237788987 67777778888888889999999999986320
Q ss_pred ccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCC----HHHHHHHHHcCCcEEEEe
Q 021739 118 HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 118 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~----~e~a~~~~~~G~d~i~v~ 193 (308)
.. .. +.. .++..++.++++++.+++||++|+... .+.++.+.++|+|+|+++
T Consensus 142 -~~-------------~~-g~~---------~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 142 -PD-------------IS-GAE---------VEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred -CC-------------Cc-ccc---------HHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 00 00 000 012246889999999999999998743 356788999999999999
Q ss_pred cccc-cCC---------CC---Cc----chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhc
Q 021739 194 NHGA-RQL---------DY---VP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 256 (308)
Q Consensus 194 ~~gg-~~~---------~~---~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~ 256 (308)
|+.. ... .+ ++ ..+..+.++++.+ ++|||++|||+|++|+.+++.+|||+|++||++++.
T Consensus 198 n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~- 274 (334)
T PRK07565 198 NRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRH- 274 (334)
T ss_pred CCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhh-
Confidence 8642 111 11 11 1234455565555 799999999999999999999999999999999973
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021739 257 AVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 294 (308)
Q Consensus 257 ~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (308)
|+ +++..++++|+.+|+..|+++++|+++..
T Consensus 275 ---g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 275 ---GP----DYIGTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred ---Cc----HHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 55 47889999999999999999999999854
No 32
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.90 E-value=1.7e-22 Score=186.40 Aligned_cols=213 Identities=23% Similarity=0.235 Sum_probs=153.7
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCCC---------------------------
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS--------------------------- 52 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~~--------------------------- 52 (308)
|+|+++|.++++||++|+-... . +....+.+.+.|.+.++. +....
T Consensus 2 l~~~~~Gl~l~nPi~~aag~~~----~--~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~ 75 (299)
T cd02940 2 LSVTFCGIKFPNPFGLASAPPT----T--SYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNI 75 (299)
T ss_pred CceEECCEEcCCCCEeCCcCCC----C--CHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCC
Confidence 6899999999999999993222 1 234444444557766553 21100
Q ss_pred ------CHHH----Hh---ccCC-CCceEEeeecC-CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCC
Q 021739 53 ------SVEE----VS---STGP-GIRFFQLYVTK-HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 117 (308)
Q Consensus 53 ------~~e~----i~---~~~~-~~~~~Ql~~~~-d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~ 117 (308)
.++. +. ...+ .+.+.|++ +. +++.+.+.++++++.|+++|++|++||..-
T Consensus 76 e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~-G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-------------- 140 (299)
T cd02940 76 ELISEKPLEYWLKEIRELKKDFPDKILIASIM-CEYNKEDWTELAKLVEEAGADALELNFSCPHGM-------------- 140 (299)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCCeEEEEec-CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC--------------
Confidence 0111 11 1112 36789998 76 899999999999888999999999999741
Q ss_pred ccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEe
Q 021739 118 HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVS 193 (308)
Q Consensus 118 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~----e~a~~~~~~G~d~i~v~ 193 (308)
.. .+.+..+. .|++...+.++++++.+++||++|+..+. +.++.+.++|+|+|+++
T Consensus 141 --~~----------------~~~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 141 --PE----------------RGMGAAVG--QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred --CC----------------CCCchhhc--cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 00 01111222 36677778999999989999999998543 66888999999999988
Q ss_pred cccc---------------------cCCCCCc----chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021739 194 NHGA---------------------RQLDYVP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 194 ~~gg---------------------~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 248 (308)
|+.. .+..+++ .+++.+.++++.+..++|||++|||++++|+.+++.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 7431 1112232 24788888888775579999999999999999999999999999
Q ss_pred chHHHH
Q 021739 249 GRPVPF 254 (308)
Q Consensus 249 g~~~l~ 254 (308)
||.+++
T Consensus 281 ~ta~~~ 286 (299)
T cd02940 281 CTAVMN 286 (299)
T ss_pred ceeecc
Confidence 999887
No 33
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.90 E-value=3.4e-22 Score=182.47 Aligned_cols=242 Identities=22% Similarity=0.286 Sum_probs=169.6
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCCCC--------------------------
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATSS-------------------------- 53 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~~~-------------------------- 53 (308)
++|+++|.++++||++|+=..+ . +........+.|.++++. +....+
T Consensus 2 l~~~~~Gl~f~NPl~lAaG~~~----~--~~~~~~~~~~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N 75 (310)
T COG0167 2 LSTEILGLKFPNPLGLAAGFDG----K--NGEELDALAALGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNN 75 (310)
T ss_pred CceeecceecCCCCeEcccCCc----c--CHHHHHHHHhcCCceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCc
Confidence 5789999999999999873221 1 334444455555555443 221000
Q ss_pred ------HHHHhccCC-----C-CceEEeeecCCchHHHHHHHHHHHcC-CcEEEEecCCCCCCcchHHhhhccCCCCccc
Q 021739 54 ------VEEVSSTGP-----G-IRFFQLYVTKHRNVDAQLVKRAERAG-FKAIALTVDTPRLGRREADIKNRFVLPPHLT 120 (308)
Q Consensus 54 ------~e~i~~~~~-----~-~~~~Ql~~~~d~~~~~~~~~~~~~~g-~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~ 120 (308)
++++..... + +.+...+ ....+...+.++.+++.+ ++++.+|+.||-. |
T Consensus 76 ~G~~~~~~~l~~~~~~~~~~~~~i~~~~~-~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~---- 137 (310)
T COG0167 76 PGADAFLEELKLAKYEGKPIGVNIGKNKG-GPSEEAWADYARLLEEAGDADAIELNISCPNT-------------P---- 137 (310)
T ss_pred hhHHHHHHHHHhhhhccCCcCcceEEecC-CCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------C----
Confidence 111111111 1 1222222 445666777777777777 7888888888842 0
Q ss_pred cccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCHH----HHHHHHHcCCcEEEEeccc
Q 021739 121 LKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAE----DASLAIQYGAAGIIVSNHG 196 (308)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e----~a~~~~~~G~d~i~v~~~g 196 (308)
+ ...++ .|++...+.++++++..++||++|+..+.+ .|+.+.++|+|+|++.|+.
T Consensus 138 ------------------g-~~~l~--~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~ 196 (310)
T COG0167 138 ------------------G-GRALG--QDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTT 196 (310)
T ss_pred ------------------C-hhhhc--cCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeec
Confidence 0 11121 256666678899999999999999987653 4788999999999999953
Q ss_pred ccC--C------------C---CC----cchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 197 ARQ--L------------D---YV----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 197 g~~--~------------~---~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
... . . ++ +.....++++++.+..++|||++|||.|++|+++.+.+||++|++|+++++
T Consensus 197 ~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~- 275 (310)
T COG0167 197 KSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY- 275 (310)
T ss_pred cccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee-
Confidence 210 0 1 12 234567788888886789999999999999999999999999999999997
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccce
Q 021739 256 LAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 295 (308)
Q Consensus 256 ~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~ 295 (308)
+|+ .+++.+.++|..+|+..|++|++|+++...
T Consensus 276 ---~Gp----~i~~~I~~~l~~~l~~~g~~si~d~iG~~~ 308 (310)
T COG0167 276 ---KGP----GIVKEIIKGLARWLEEKGFESIQDIIGSAL 308 (310)
T ss_pred ---eCc----hHHHHHHHHHHHHHHHcCCCCHHHHhchhc
Confidence 477 477899999999999999999999988643
No 34
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.90 E-value=5e-22 Score=187.31 Aligned_cols=247 Identities=18% Similarity=0.239 Sum_probs=175.2
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecC-CC--C-----------------------C--
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSS-WA--T-----------------------S-- 52 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~-~~--~-----------------------~-- 52 (308)
|+|+|+|.++++||++|+-... . +....+.+.+.|++.+|+- .+ . -
T Consensus 11 Lst~~~Gl~l~NP~i~ASgp~t--~----~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~i 84 (385)
T PLN02495 11 LSVTVNGLKMPNPFVIGSGPPG--T----NYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVI 84 (385)
T ss_pred ceEEECCEEcCCCcEeCCccCC--C----CHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccccccc
Confidence 6899999999999999985432 1 3455556666688877741 11 0 0
Q ss_pred -----------CHH----HHhc---cCCC-CceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhcc
Q 021739 53 -----------SVE----EVSS---TGPG-IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF 113 (308)
Q Consensus 53 -----------~~e----~i~~---~~~~-~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~ 113 (308)
+++ ++.. ..+. +.+..+.-..+.+...++++++++.|++++.+|+.||-.. ..+
T Consensus 85 Gl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~-~~r------ 157 (385)
T PLN02495 85 GWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM-PER------ 157 (385)
T ss_pred cccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CcC------
Confidence 122 2221 1223 6677776236788888999999999999999999999530 000
Q ss_pred CCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH----HHHHHHHHcCCcE
Q 021739 114 VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAG 189 (308)
Q Consensus 114 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~----e~a~~~~~~G~d~ 189 (308)
..+..+. .+++...+.++++++.+++||++|+..+. +.++.+.++|+|+
T Consensus 158 -------------------------~~g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadg 210 (385)
T PLN02495 158 -------------------------KMGAAVG--QDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEG 210 (385)
T ss_pred -------------------------ccchhhc--cCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCE
Confidence 0011111 25666677889999988999999998654 4578889999999
Q ss_pred EEEecccc--cCC----------------CC---Cc----chHHHHHHHHHHcc----CCCeEEEecCCCCHHHHHHHHH
Q 021739 190 IIVSNHGA--RQL----------------DY---VP----ATVMALEEVVQAAK----GRVPVFLDGGVRRGTDVFKALA 240 (308)
Q Consensus 190 i~v~~~gg--~~~----------------~~---~~----~~~~~l~~i~~~~~----~~ipvia~GGI~~~~d~~k~l~ 240 (308)
|++.|+-. ... .+ |+ .....+.++++.+. .++|||+.|||.|++|+++++.
T Consensus 211 i~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~ 290 (385)
T PLN02495 211 VAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFIL 290 (385)
T ss_pred EEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHH
Confidence 99998532 111 01 11 11223344555442 2599999999999999999999
Q ss_pred cCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccce
Q 021739 241 LGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 295 (308)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~ 295 (308)
+||++|++++.+++ +|+ .+++.+.++|+.+|...|+++++|+++..+
T Consensus 291 aGAs~VQv~Ta~~~----~Gp----~vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 291 LGADTVQVCTGVMM----HGY----PLVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred hCCCceeEeeeeee----cCc----HHHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 99999999999986 477 477889999999999999999999988643
No 35
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.90 E-value=1.3e-21 Score=178.59 Aligned_cols=236 Identities=22% Similarity=0.220 Sum_probs=169.1
Q ss_pred CceeecCc-----ccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhc----cCCC-CceEEee
Q 021739 1 MTTTVLGF-----NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS----TGPG-IRFFQLY 70 (308)
Q Consensus 1 ~~t~~~g~-----~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~----~~~~-~~~~Ql~ 70 (308)
|+++|-.+ .+..||+-|.|... + +..+|.+.+++|.-.++-- ..++|+..+ ..+. ...+-+-
T Consensus 30 l~~~~~~~~~~~~~~~iPii~AnMdtv--~----~~~mA~~la~~g~~~~iHk--~~~~e~~~~~v~~~~~~~~~~~~vs 101 (343)
T TIGR01305 30 LERTFTFRNSKQTYSGVPIIAANMDTV--G----TFEMAAALSQHSIFTAIHK--HYSVDEWKAFATNSSPDCLQNVAVS 101 (343)
T ss_pred eeEEEccccCCceeeCCceEecCCCcc--c----CHHHHHHHHHCCCeEEEee--CCCHHHHHHHHHhhcccccceEEEE
Confidence 35566533 57899999999654 4 6799999999998887763 334544222 1111 1111122
Q ss_pred ecCCchHHHHHHHHHHHc--CCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhc
Q 021739 71 VTKHRNVDAQLVKRAERA--GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQI 148 (308)
Q Consensus 71 ~~~d~~~~~~~~~~~~~~--g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (308)
.+..++..+++ +.+.++ +.++|.|.+ . .+
T Consensus 102 vG~~~~d~er~-~~L~~a~~~~d~iviD~--A-------------------------------------hG--------- 132 (343)
T TIGR01305 102 SGSSDNDLEKM-TSILEAVPQLKFICLDV--A-------------------------------------NG--------- 132 (343)
T ss_pred eccCHHHHHHH-HHHHhcCCCCCEEEEEC--C-------------------------------------CC---------
Confidence 24344433333 333334 588876643 1 11
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEe-----cccccCCCCCc-chHHHHHHHHHHccC-C
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS-----NHGARQLDYVP-ATVMALEEVVQAAKG-R 220 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~~G~d~i~v~-----~~gg~~~~~~~-~~~~~l~~i~~~~~~-~ 220 (308)
+.....+.|++||+.++-+.++|+ +.+++.++.|+++|||+|.|+ +|++++.++.. |.++++.+++++... +
T Consensus 133 hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~ 212 (343)
T TIGR01305 133 YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLK 212 (343)
T ss_pred cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCC
Confidence 222335789999999865666666 899999999999999999998 56667766554 899999999988765 7
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------hccc-----------------CCH--
Q 021739 221 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF--------------------SLAV-----------------DGE-- 261 (308)
Q Consensus 221 ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~--------------------~~~~-----------------~G~-- 261 (308)
+|||++|||+++.|+.|||++|||+||+|+.|.- +|++ +|.
T Consensus 213 v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~e~ 292 (343)
T TIGR01305 213 GHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGKTV 292 (343)
T ss_pred CeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCcccccccccCceE
Confidence 9999999999999999999999999999976631 1111 111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 262 -----AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 262 -----~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
-.+.+++..+..+|+..|.++|..++.||+++
T Consensus 293 ~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 293 EVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred EeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 13889999999999999999999999999765
No 36
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.90 E-value=1.1e-21 Score=184.45 Aligned_cols=269 Identities=21% Similarity=0.260 Sum_probs=172.4
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecC-C---CCCCHHHHhc----cCCC---CceEEe
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSS-W---ATSSVEEVSS----TGPG---IRFFQL 69 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~-~---~~~~~e~i~~----~~~~---~~~~Ql 69 (308)
|++.+.+..++.||+++||++. + +.+++.+++++|...++.. . ...+.+++.. ..+. ...-++
T Consensus 37 ls~~~~~~~i~~Piv~a~M~gV--t----~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~ 110 (368)
T PRK08649 37 TSWQIDAYRFEIPIIASPMDAV--V----SPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQEL 110 (368)
T ss_pred eeeeecceeccCcEeccCCccc--C----CHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHh
Confidence 4566778889999999999886 6 5599999999998655552 1 1223333222 1110 001111
Q ss_pred e-ecCCchHHHHHHHHHHHcCCcEEEEecCC-CCCC-cchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhh
Q 021739 70 Y-VTKHRNVDAQLVKRAERAGFKAIALTVDT-PRLG-RREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVAN 146 (308)
Q Consensus 70 ~-~~~d~~~~~~~~~~~~~~g~~~i~i~~~~-p~~~-~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (308)
+ -+.|++.+.++++.+++.+ +.+.+.. |... .+.+.+ .....+.+..+.....+.+..+
T Consensus 111 ~~~P~~p~l~~~iv~~~~~~~---V~v~vr~~~~~~~e~a~~l---------------~eaGvd~I~vhgrt~~~~h~~~ 172 (368)
T PRK08649 111 YAEPIKPELITERIAEIRDAG---VIVAVSLSPQRAQELAPTV---------------VEAGVDLFVIQGTVVSAEHVSK 172 (368)
T ss_pred hcCCCCHHHHHHHHHHHHhCe---EEEEEecCCcCHHHHHHHH---------------HHCCCCEEEEeccchhhhccCC
Confidence 1 1346777788888777754 2233221 1110 011111 0011111111100111222211
Q ss_pred hcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc-----C-CCCCcchHHHHHHHHHHcc--
Q 021739 147 QIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR-----Q-LDYVPATVMALEEVVQAAK-- 218 (308)
Q Consensus 147 ~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~-----~-~~~~~~~~~~l~~i~~~~~-- 218 (308)
...|+.+.++++..++||+++.+.+.+.++.+.++|+|+|.+..++|. . ...+.|...++.+++++.+
T Consensus 173 ----~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~ 248 (368)
T PRK08649 173 ----EGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDY 248 (368)
T ss_pred ----cCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHh
Confidence 113666677766789999998899999999999999999988644332 1 1224667777777754321
Q ss_pred ------CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccC-----------------CH-------HHHHHHH
Q 021739 219 ------GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-----------------GE-------AGVRKVL 268 (308)
Q Consensus 219 ------~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~-----------------G~-------~~v~~~i 268 (308)
.++|||++|||+++.|+.|+|++|||+||+|++|.....+. |. -.+.+++
T Consensus 249 l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~~~g~~~~~~ 328 (368)
T PRK08649 249 LDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPSLPRGTRIKVGTTGSLEQIL 328 (368)
T ss_pred hhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCcCCCceEEeCCCcCcHHHHh
Confidence 15999999999999999999999999999999997532211 11 1377887
Q ss_pred H----------HHHHHHHHHHHHcCCCCHhhhcccceec
Q 021739 269 Q----------MLRDEFELTMALSGCRSLKEITRNHIVT 297 (308)
Q Consensus 269 ~----------~l~~~l~~~m~~~G~~~i~~l~~~~~~~ 297 (308)
. ++...||+.|.++|+.+|+||++-.+++
T Consensus 329 ~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 329 FGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred cCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 7 9999999999999999999999887654
No 37
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.90 E-value=7.2e-22 Score=190.41 Aligned_cols=245 Identities=20% Similarity=0.225 Sum_probs=176.2
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCC------C----------------------
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWA------T---------------------- 51 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~------~---------------------- 51 (308)
|+|+++|.++++||++|+-... .. ...+.+.. +.|.+.++. |.. .
T Consensus 4 L~~~~~Gl~l~nPv~~aag~~~---~~--~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~~~ 77 (420)
T PRK08318 4 LSITFCGIKSPNPFWLASAPPT---NK--YYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNIEL 77 (420)
T ss_pred ceEEECCEecCCCcEeCCcCCC---CC--HHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCccc
Confidence 5899999999999999984321 11 22334444 356665442 110 0
Q ss_pred ---CCHH----HH---hccCC-CCceEEeeecC-CchHHHHHHHHHHHcCCcEEEEecCCCCC-CcchHHhhhccCCCCc
Q 021739 52 ---SSVE----EV---SSTGP-GIRFFQLYVTK-HRNVDAQLVKRAERAGFKAIALTVDTPRL-GRREADIKNRFVLPPH 118 (308)
Q Consensus 52 ---~~~e----~i---~~~~~-~~~~~Ql~~~~-d~~~~~~~~~~~~~~g~~~i~i~~~~p~~-~~r~~~~~~~~~~p~~ 118 (308)
..++ .+ ....+ .+.++|++ +. +.+.+.+.++.+++.|+++|++|+.||.. ..+
T Consensus 78 ~s~~~~~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~------------- 143 (420)
T PRK08318 78 ITDRPLEVNLREIRRVKRDYPDRALIASIM-VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER------------- 143 (420)
T ss_pred ccccCHHHHHHHHHHHHhhCCCceEEEEec-cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc-------------
Confidence 0112 11 11122 35789998 76 78888899999999999999999999962 100
Q ss_pred cccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCC----HHHHHHHHHcCCcEEEEec
Q 021739 119 LTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 119 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~----~e~a~~~~~~G~d~i~v~~ 194 (308)
+.+..+. .|++...++++++++.+++||++|+..+ .+.++.+.++|+|+|++.|
T Consensus 144 --------------------~~g~~~~--~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~N 201 (420)
T PRK08318 144 --------------------GMGSAVG--QVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLIN 201 (420)
T ss_pred --------------------CCccccc--CCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEec
Confidence 0111121 3666777899999998999999999854 3567889999999999876
Q ss_pred ccc---------------------cCCCCCcc----hHHHHHHHHHHcc-CCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021739 195 HGA---------------------RQLDYVPA----TVMALEEVVQAAK-GRVPVFLDGGVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 195 ~gg---------------------~~~~~~~~----~~~~l~~i~~~~~-~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 248 (308)
+.. .+..++++ .+..+.++++.+. .++|||++|||.|++|+.+++.+|||+||+
T Consensus 202 t~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi 281 (420)
T PRK08318 202 TINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQV 281 (420)
T ss_pred ccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhee
Confidence 421 01112333 4677888877653 279999999999999999999999999999
Q ss_pred chHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccce
Q 021739 249 GRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 295 (308)
Q Consensus 249 g~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~ 295 (308)
||.+++ +|+ .++..+.++|+.+|...|+.++.++.+..+
T Consensus 282 ~ta~~~----~gp----~ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 282 CTAAMQ----YGF----RIVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred eeeecc----CCc----hhHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 999987 366 467889999999999999999999987533
No 38
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.89 E-value=2.1e-21 Score=180.76 Aligned_cols=238 Identities=25% Similarity=0.330 Sum_probs=171.8
Q ss_pred CceeecC-cccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhc---cCCCCceEEeeecCCch
Q 021739 1 MTTTVLG-FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS---TGPGIRFFQLYVTKHRN 76 (308)
Q Consensus 1 ~~t~~~g-~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~---~~~~~~~~Ql~~~~d~~ 76 (308)
|+|+|.+ ..++.||+.|||.+. + +..++.+..+.|...++... .+.++... ...+...+..-.+.+++
T Consensus 23 l~t~l~~~~~l~~Piv~apM~~v--t----~~~ma~ava~~GglGvi~~~--~~~~~~~~~i~~vk~~l~v~~~~~~~~~ 94 (325)
T cd00381 23 LSTKLTKNITLNIPLVSAPMDTV--T----ESEMAIAMARLGGIGVIHRN--MSIEEQAEEVRKVKGRLLVGAAVGTRED 94 (325)
T ss_pred eeEEecCccccCCCEEecCCCcC--C----cHHHHHHHHHCCCEEEEeCC--CCHHHHHHHHHHhccCceEEEecCCChh
Confidence 4677877 788999999999876 6 55889988898876555532 33344332 11222333222243333
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHH
Q 021739 77 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 156 (308)
Q Consensus 77 ~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 156 (308)
..+.++.+.++|++.|.+++.. ++++...+.
T Consensus 95 -~~~~~~~l~eagv~~I~vd~~~------------------------------------------------G~~~~~~~~ 125 (325)
T cd00381 95 -DKERAEALVEAGVDVIVIDSAH------------------------------------------------GHSVYVIEM 125 (325)
T ss_pred -HHHHHHHHHhcCCCEEEEECCC------------------------------------------------CCcHHHHHH
Confidence 3445566667899998876421 011222467
Q ss_pred HHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc------CCCCCcchHHHHHHHHHHccC-CCeEEEecC
Q 021739 157 VKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR------QLDYVPATVMALEEVVQAAKG-RVPVFLDGG 228 (308)
Q Consensus 157 i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~------~~~~~~~~~~~l~~i~~~~~~-~ipvia~GG 228 (308)
++++++.. ++||++..+.+.+.++.+.++|+|+|.++..+|. ....+.+++..+.++.+.+.. ++|||++||
T Consensus 126 i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GG 205 (325)
T cd00381 126 IKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGG 205 (325)
T ss_pred HHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCC
Confidence 89999876 4899988889999999999999999998543322 123456788888888776532 699999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHHHhcccC------------------------------------------C------
Q 021739 229 VRRGTDVFKALALGASGVFVGRPVPFSLAVD------------------------------------------G------ 260 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~------------------------------------------G------ 260 (308)
|+++.|+.+++++||++||+||.|.-...+. |
T Consensus 206 I~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eg~~~~v~ 285 (325)
T cd00381 206 IRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVPEGVEGIVP 285 (325)
T ss_pred CCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccCCceEEEEe
Confidence 9999999999999999999999986421110 1
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccce
Q 021739 261 -EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 295 (308)
Q Consensus 261 -~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~ 295 (308)
.-.+.+.+..+...||+.|.++|+.+|+||++...
T Consensus 286 ~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 286 YKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 01388999999999999999999999999998754
No 39
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.89 E-value=1.2e-21 Score=183.72 Aligned_cols=268 Identities=20% Similarity=0.242 Sum_probs=165.3
Q ss_pred eeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCC----CCCCHH----HHhccCCC-------CceE
Q 021739 3 TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW----ATSSVE----EVSSTGPG-------IRFF 67 (308)
Q Consensus 3 t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~----~~~~~e----~i~~~~~~-------~~~~ 67 (308)
-++.+.+++.||+.|||++. + +.+++.+|+++|...+++.. .....+ ++...... ....
T Consensus 36 ~~i~~~~l~~PivlAPMagV--t----d~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~~a~aa~~~~ 109 (369)
T TIGR01304 36 WQIDAYRFELPFIAHPMDAL--V----SPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGDQAAATRLLQ 109 (369)
T ss_pred eEEcceecCCceeecCCCcc--c----CHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChHHHHHHHHHH
Confidence 34567788999999999987 7 55999999999996656532 111111 12211000 0111
Q ss_pred Eeee-cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhh
Q 021739 68 QLYV-TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVAN 146 (308)
Q Consensus 68 Ql~~-~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (308)
++|. +.+++.+.++++.+++++.. +-+.++ |.. ..++. +.+.+..++.+..+.....+.+...
T Consensus 110 e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~~~---~~e~a-----------~~l~eAGad~I~ihgrt~~q~~~sg 173 (369)
T TIGR01304 110 ELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-PQN---AREIA-----------PIVVKAGADLLVIQGTLVSAEHVST 173 (369)
T ss_pred HcCCCccChHHHHHHHHHHHhcceE-EEEecC-CcC---HHHHH-----------HHHHHCCCCEEEEeccchhhhccCC
Confidence 1221 23566666666666665521 222221 111 10100 0000111111111100111222211
Q ss_pred hcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccC----CCCCcchHHHHHHHHHHc-----
Q 021739 147 QIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ----LDYVPATVMALEEVVQAA----- 217 (308)
Q Consensus 147 ~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~----~~~~~~~~~~l~~i~~~~----- 217 (308)
.-.|+.+.++++..++||+++.+.+.++++.+.+.|+|+|.++.+++.. ...+.++...+.++.++.
T Consensus 174 ----~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~ 249 (369)
T TIGR01304 174 ----SGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLD 249 (369)
T ss_pred ----CCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 2247788888888899999988999999999999999999844333211 122456677777665432
Q ss_pred --cC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCC-----------------------H----HHHHHH
Q 021739 218 --KG-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG-----------------------E----AGVRKV 267 (308)
Q Consensus 218 --~~-~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G-----------------------~----~~v~~~ 267 (308)
.+ .+|||++|||+++.|+.|+|++|||+||+|++|+....+.| . +.++++
T Consensus 250 e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (369)
T TIGR01304 250 ETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESGTVGEAPTLEEI 329 (369)
T ss_pred hcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCccccccccccCCCCcHHHH
Confidence 21 49999999999999999999999999999999987532211 0 125555
Q ss_pred H----------HHHHHHHHHHHHHcCCCCHhhhccccee
Q 021739 268 L----------QMLRDEFELTMALSGCRSLKEITRNHIV 296 (308)
Q Consensus 268 i----------~~l~~~l~~~m~~~G~~~i~~l~~~~~~ 296 (308)
+ .+|...|+..|..+|+++++|+++-.+.
T Consensus 330 ~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 330 LHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred eeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 5 4788999999999999999999987654
No 40
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.88 E-value=8.4e-21 Score=175.75 Aligned_cols=240 Identities=19% Similarity=0.199 Sum_probs=168.8
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCCC--------------------------C
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS--------------------------S 53 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~~--------------------------~ 53 (308)
|+|+++|.++++||++|+-... .+....+.+.+.|.+.++. |.... .
T Consensus 2 L~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g 75 (310)
T PRK02506 2 TSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLG 75 (310)
T ss_pred CceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcC
Confidence 6899999999999999995432 1234444577888887765 22110 1
Q ss_pred ----HHHHhcc---CC-CCceEEeeecCCchHHHHHHHHHHHcC-CcEEEEecCCCCCCcchHHhhhccCCCCccccccc
Q 021739 54 ----VEEVSST---GP-GIRFFQLYVTKHRNVDAQLVKRAERAG-FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY 124 (308)
Q Consensus 54 ----~e~i~~~---~~-~~~~~Ql~~~~d~~~~~~~~~~~~~~g-~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~ 124 (308)
++++... .+ .+.+.++. +.+.+.+.+.+++++++| +++|++|+.||-... .
T Consensus 76 ~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-------------~------ 135 (310)
T PRK02506 76 FDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPG-------------K------ 135 (310)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-------------c------
Confidence 1222221 11 36677776 777888888888888888 899999999994200 0
Q ss_pred cccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH---HHHHHH---HHcCCcEEEEeccc--
Q 021739 125 EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA---EDASLA---IQYGAAGIIVSNHG-- 196 (308)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~---e~a~~~---~~~G~d~i~v~~~g-- 196 (308)
. .+ ..|++...+.++++++.+++||++|+..+. +.++.+ .+.|+++|...|.-
T Consensus 136 -------------~----~~--g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~ 196 (310)
T PRK02506 136 -------------P----QI--AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGN 196 (310)
T ss_pred -------------c----cc--ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCC
Confidence 0 00 024455568899999999999999998532 233333 35577777666531
Q ss_pred c--------cC-C-----C---CC----cchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 197 A--------RQ-L-----D---YV----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 197 g--------~~-~-----~---~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+ +. . . ++ +.....+.++++.+..++|||++|||.|++|+.+++.+||++||+++++++.
T Consensus 197 ~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~ 276 (310)
T PRK02506 197 GLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKE 276 (310)
T ss_pred ceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHh
Confidence 1 00 0 0 11 1234556667676655799999999999999999999999999999999973
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 256 LAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 256 ~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
|+ .++..++++|+.+|+..|+++++|+++.
T Consensus 277 ----gp----~~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 277 ----GP----AVFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred ----Ch----HHHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 56 4778999999999999999999999874
No 41
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.87 E-value=1.2e-20 Score=176.21 Aligned_cols=250 Identities=25% Similarity=0.290 Sum_probs=151.3
Q ss_pred ccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCc-eEEeeecCCchHHHHHHHHHHH
Q 021739 9 NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIR-FFQLYVTKHRNVDAQLVKRAER 87 (308)
Q Consensus 9 ~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~-~~Ql~~~~d~~~~~~~~~~~~~ 87 (308)
+++.||++++|+++.++ ++...++++++++.|+....+|.. .+.+++... ... ++|+- ........+.++
T Consensus 63 ~l~~p~~is~MS~GaLS-~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~--~~~~I~Q~~-sg~fGv~~~~l~---- 133 (368)
T PF01645_consen 63 ELSIPFMISAMSYGALS-EEAKEALAKGANMAGTASNTGEGG-ELPEERKAA--KDLRIKQIA-SGRFGVRPEYLK---- 133 (368)
T ss_dssp HHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB---TTSSEEEE--TT-TT--HHHHC----
T ss_pred hheeeeecccCChhhcC-HHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc--CCceEEEcC-CCCCCCCHHHhc----
Confidence 46899999999998774 778889999999999888766544 444433322 244 88976 566666655554
Q ss_pred cCCcEEEEecCC---CCCCcchHHhhhccCCC-CccccccccccccccCCCCCCchhhhHhhhhccccc-C----HHHHH
Q 021739 88 AGFKAIALTVDT---PRLGRREADIKNRFVLP-PHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-N----WKDVK 158 (308)
Q Consensus 88 ~g~~~i~i~~~~---p~~~~r~~~~~~~~~~p-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~----~~~i~ 158 (308)
.++.|.|-++- |..| ..+| .||+..- .....+ ......++|...+++ + .+.|.
T Consensus 134 -~a~~iEIKigQGAKpG~G---------G~Lp~~KV~~~i---a~~R~~-----~~g~~~iSP~~h~di~s~edl~~~I~ 195 (368)
T PF01645_consen 134 -QADMIEIKIGQGAKPGEG---------GHLPGEKVTEEI---ARIRGV-----PPGVDLISPPPHHDIYSIEDLAQLIE 195 (368)
T ss_dssp -C-SEEEEE---TTSTTT-----------EE-GGG--HHH---HHHHTS------TT--EE--SS-TT-SSHHHHHHHHH
T ss_pred -CCCeEEEEEecCccccCc---------ceechhhchHHH---HHHhCC-----CCCCccccCCCCCCcCCHHHHHHHHH
Confidence 45778887652 3221 1122 1333210 000001 112334445444544 2 45688
Q ss_pred HHHHhc-CCCEEEEecCC--HHHH-HHHHHcCCcEEEEeccc-ccCC-------CCCcchHHHHHHHHHHc-----cCCC
Q 021739 159 WLQTIT-SLPILVKGVLT--AEDA-SLAIQYGAAGIIVSNHG-ARQL-------DYVPATVMALEEVVQAA-----KGRV 221 (308)
Q Consensus 159 ~ir~~~-~~Pv~vK~~~~--~e~a-~~~~~~G~d~i~v~~~g-g~~~-------~~~~~~~~~l~~i~~~~-----~~~i 221 (308)
++|+.. +.||.+|++.. .++. ..+.++|+|+|+++++. |+.. +.+.|+...|.++.+.+ ++++
T Consensus 196 ~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V 275 (368)
T PF01645_consen 196 ELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRV 275 (368)
T ss_dssp HHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCS
T ss_pred HHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCce
Confidence 889887 89999999843 3443 44889999999999864 4421 24677778888887654 4579
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccC-----------------------------CHHHHHHHHHHHH
Q 021739 222 PVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-----------------------------GEAGVRKVLQMLR 272 (308)
Q Consensus 222 pvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~i~~l~ 272 (308)
.++++||++++.|++|++++|||+|.+||++|+++.|. +.+.|.+++..+.
T Consensus 276 ~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~ 355 (368)
T PF01645_consen 276 SLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACA 355 (368)
T ss_dssp EEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHH
T ss_pred EEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987652 3567999999999
Q ss_pred HHHHHHHHHcCCC
Q 021739 273 DEFELTMALSGCR 285 (308)
Q Consensus 273 ~~l~~~m~~~G~~ 285 (308)
+|++..+..+|.+
T Consensus 356 ~el~~~~~a~G~~ 368 (368)
T PF01645_consen 356 EELREILAALGKR 368 (368)
T ss_dssp HHHHHHHHHHT-S
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999974
No 42
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.87 E-value=3.1e-20 Score=170.89 Aligned_cols=223 Identities=19% Similarity=0.142 Sum_probs=154.6
Q ss_pred eeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCCC--------------------------C--
Q 021739 3 TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS--------------------------S-- 53 (308)
Q Consensus 3 t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~~--------------------------~-- 53 (308)
|+++|.++++||++|+-... .+....+.+.+.|.++++. |.... .
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWC------TTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCCC------CCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 57899999999999994422 2445566666688887764 22100 1
Q ss_pred --HHHHhcc------CCCCceEEeeecCCchHHHHHHHHHHHc---CCcEEEEecCCCCCCcchHHhhhccCCCCccccc
Q 021739 54 --VEEVSST------GPGIRFFQLYVTKHRNVDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 122 (308)
Q Consensus 54 --~e~i~~~------~~~~~~~Ql~~~~d~~~~~~~~~~~~~~---g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~ 122 (308)
++++.+. ...|.++|+. +. .+...+.++++.+. ++++|++|+.||....
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~-g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~------------------ 134 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVT-GS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPG------------------ 134 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECC-CC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCC------------------
Confidence 2233321 1237889997 66 77777888887765 6999999999996310
Q ss_pred cccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH------HHHHHHHHc--CCcEEEEec
Q 021739 123 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA------EDASLAIQY--GAAGIIVSN 194 (308)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~------e~a~~~~~~--G~d~i~v~~ 194 (308)
. .. +. .|++...++++++++.+++||++|+.... +.++.+.++ |+|+|++.|
T Consensus 135 ---------------~--~~-~~--~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 135 ---------------K--PP-PA--YDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred ---------------c--cc-cc--CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 0 00 11 25666678899999999999999998432 235566677 999999876
Q ss_pred ccc---------cC-------CCCCcc-------hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 021739 195 HGA---------RQ-------LDYVPA-------TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 195 ~gg---------~~-------~~~~~~-------~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
+.+ +. ..++.+ .+..+.++++.+..++|||++|||.|++|+.+++.+|||+||+||.
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 431 11 111221 2344566666664469999999999999999999999999999999
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHH
Q 021739 252 VPFSLAVDGEAGVRKVLQMLRDEFELTM 279 (308)
Q Consensus 252 ~l~~~~~~G~~~v~~~i~~l~~~l~~~m 279 (308)
+++ +|+ .++..++++|+.+|
T Consensus 275 ~~~----~gp----~~~~~i~~~L~~~~ 294 (294)
T cd04741 275 LGK----EGP----KVFARIEKELEDIW 294 (294)
T ss_pred hhh----cCc----hHHHHHHHHHHhhC
Confidence 986 255 36677788887664
No 43
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.86 E-value=4.7e-20 Score=171.20 Aligned_cols=232 Identities=25% Similarity=0.311 Sum_probs=161.2
Q ss_pred cCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHH-------HhccC-------CCCceEEeee
Q 021739 6 LGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEE-------VSSTG-------PGIRFFQLYV 71 (308)
Q Consensus 6 ~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~-------i~~~~-------~~~~~~Ql~~ 71 (308)
-+.+++.||+-|||... + +..++.+..++|...++.-. .++|+ +.... .+...+=...
T Consensus 32 ~~~~l~iPivsa~MDtV--t----e~~mAiama~~Gglgvih~~--~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aav 103 (352)
T PF00478_consen 32 RNITLKIPIVSAPMDTV--T----ESEMAIAMARLGGLGVIHRN--MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAV 103 (352)
T ss_dssp TSEEESSSEEE-SSTTT--S----SHHHHHHHHHTTSEEEEESS--SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEE
T ss_pred CCEeecCceEecCcccc--c----hHHHHHHHHHhcCCceecCC--CCHHHHHHHHhhhccccccccccccccceEEEEe
Confidence 46788999999999665 5 56899888899877777633 34332 11111 1223332222
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
+..++. .+.++.+.++|++.|.|.. . .++.++
T Consensus 104 g~~~~~-~er~~~L~~agvD~ivID~--a-------------------------------------~g~s~~-------- 135 (352)
T PF00478_consen 104 GTRDDD-FERAEALVEAGVDVIVIDS--A-------------------------------------HGHSEH-------- 135 (352)
T ss_dssp ESSTCH-HHHHHHHHHTT-SEEEEE---S-------------------------------------STTSHH--------
T ss_pred cCCHHH-HHHHHHHHHcCCCEEEccc--c-------------------------------------CccHHH--------
Confidence 333222 2334555668999987753 1 111122
Q ss_pred cCHHHHHHHHHhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEecccccC------CCCCcchHHHHHHHHHHcc-CCCeE
Q 021739 152 LNWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ------LDYVPATVMALEEVVQAAK-GRVPV 223 (308)
Q Consensus 152 ~~~~~i~~ir~~~~-~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-~~ipv 223 (308)
..+.++++|+.++ +||++..+.|.+.++.|.++|||+|.+.-.+|.. .-.+.|.+.++.+++++.. ..+||
T Consensus 136 -~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~i 214 (352)
T PF00478_consen 136 -VIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPI 214 (352)
T ss_dssp -HHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEE
T ss_pred -HHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCce
Confidence 2467999999885 9999999999999999999999999997655431 1235678999999887664 36999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------hccc------------------------C
Q 021739 224 FLDGGVRRGTDVFKALALGASGVFVGRPVPF--------------------SLAV------------------------D 259 (308)
Q Consensus 224 ia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~--------------------~~~~------------------------~ 259 (308)
|++|||+++.|+.|||++|||+||+|+.|-- +|++ +
T Consensus 215 IADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~~~~v~e 294 (352)
T PF00478_consen 215 IADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQAEDKKFVPE 294 (352)
T ss_dssp EEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTSSTSSTSSSS
T ss_pred eecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhcccccccccccc
Confidence 9999999999999999999999999998731 1111 1
Q ss_pred CH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021739 260 GE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 294 (308)
Q Consensus 260 G~-------~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (308)
|. -.+.+++..+...|++.|.++|..+|+||++..
T Consensus 295 Gve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 295 GVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp BEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred ceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 11 138899999999999999999999999999874
No 44
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.86 E-value=2.2e-20 Score=165.92 Aligned_cols=201 Identities=20% Similarity=0.213 Sum_probs=152.3
Q ss_pred ceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCC-CCH-----H--HHhccCC--CCceEEeeecCCchHHHHHH
Q 021739 13 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT-SSV-----E--EVSSTGP--GIRFFQLYVTKHRNVDAQLV 82 (308)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~-~~~-----e--~i~~~~~--~~~~~Ql~~~~d~~~~~~~~ 82 (308)
|+++|||.+. + |.++|..++++|+..+.|+|-. .++ + ......+ .+.++|+. +.+++.+.+..
T Consensus 1 ~~~~aPm~~~--~----~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGV--T----DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCC--c----CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 6899999886 6 7799999999999999998831 111 1 1111222 37899998 88999999999
Q ss_pred HHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHH
Q 021739 83 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 162 (308)
Q Consensus 83 ~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 162 (308)
+++.++|+++|+||++||....|. .+| +..+. .++++..+.++++++
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~~---------------------------G~~l~--~~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GGA---------------------------GAALL--KDPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CCe---------------------------eehhc--CCHHHHHHHHHHHHH
Confidence 999999999999999999641110 000 11121 366777899999999
Q ss_pred hcCCCEEEEecCCH-------HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHH
Q 021739 163 ITSLPILVKGVLTA-------EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDV 235 (308)
Q Consensus 163 ~~~~Pv~vK~~~~~-------e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~ 235 (308)
.+++|+.+|..... +.++.+.++|+|+|.+++....+...++..++.+.++++.. ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 88899999987322 34678889999999997654322233455778888887654 7999999999999999
Q ss_pred HHHHHc-CCCEEEEchHHHHh
Q 021739 236 FKALAL-GASGVFVGRPVPFS 255 (308)
Q Consensus 236 ~k~l~~-GAd~V~ig~~~l~~ 255 (308)
.++++. |||+|++||+++..
T Consensus 199 ~~~l~~~gad~V~igr~~l~~ 219 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALGN 219 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHhC
Confidence 999997 89999999999864
No 45
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.86 E-value=5.2e-20 Score=172.87 Aligned_cols=227 Identities=15% Similarity=0.153 Sum_probs=155.5
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCCC---------------------------
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS--------------------------- 52 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~~--------------------------- 52 (308)
|+|+++|.++++||++|+= . .. +....+.+.+.|.+.++. |....
T Consensus 49 L~~~~~Gl~l~nPi~~AsG-~----~~--~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n 121 (344)
T PRK05286 49 LPVTVMGLTFPNPVGLAAG-F----DK--NGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNN 121 (344)
T ss_pred CceEECCEECCCCCEECCC-C----CC--ChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCC
Confidence 5899999999999999772 1 22 335556688899887765 22110
Q ss_pred -C----HHHHhccCC-CCceEEeeecC-------CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCcc
Q 021739 53 -S----VEEVSSTGP-GIRFFQLYVTK-------HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHL 119 (308)
Q Consensus 53 -~----~e~i~~~~~-~~~~~Ql~~~~-------d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v 119 (308)
. ++++.+... -|.++++. .. .++.+.+.++++.+ +++++++|+.||... +
T Consensus 122 ~g~~~~~~~l~~~~~~~pvivsI~-~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~--------------g- 184 (344)
T PRK05286 122 DGADALAERLKKAYRGIPLGINIG-KNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTP--------------G- 184 (344)
T ss_pred HhHHHHHHHHHHhcCCCcEEEEEe-cCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCC--------------C-
Confidence 0 112222111 25677775 22 23455555555543 488888888888530 0
Q ss_pred ccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcC-----CCEEEEecCC------HHHHHHHHHcCCc
Q 021739 120 TLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS-----LPILVKGVLT------AEDASLAIQYGAA 188 (308)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~-----~Pv~vK~~~~------~e~a~~~~~~G~d 188 (308)
. . . ..+++...+.++++|+.++ +||++|+..+ .+.++.+.++|+|
T Consensus 185 ------------------~--~-~---~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gad 240 (344)
T PRK05286 185 ------------------L--R-D---LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGID 240 (344)
T ss_pred ------------------c--c-c---ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCc
Confidence 0 0 0 0234444578999999876 9999999843 2457888999999
Q ss_pred EEEEecccc-------------cCCCCCcc----hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 021739 189 GIIVSNHGA-------------RQLDYVPA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 189 ~i~v~~~gg-------------~~~~~~~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
+|+++|+.. .+..++++ .++.+.++++.+..++|||++|||+|++|+.+++.+|||+|++||+
T Consensus 241 gi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~ 320 (344)
T PRK05286 241 GVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSG 320 (344)
T ss_pred EEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHH
Confidence 999998531 01112222 4566777777775579999999999999999999999999999999
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 021739 252 VPFSLAVDGEAGVRKVLQMLRDEFELTMALSG 283 (308)
Q Consensus 252 ~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G 283 (308)
+++. |+ .++..++++|+.+|+..|
T Consensus 321 ~~~~----gP----~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 321 LIYE----GP----GLVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHh----Cc----hHHHHHHHHHHHHHHhcC
Confidence 9873 55 467889999999998875
No 46
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.86 E-value=1.6e-20 Score=166.95 Aligned_cols=188 Identities=16% Similarity=0.133 Sum_probs=138.5
Q ss_pred ceEeccccCcccCCCHHHHHHHH-HHHHcCCceeecCCC----------------------CCCHHH----Hhcc--CCC
Q 021739 13 PIMIAPTAFQKMAHPEGECATAR-AASAAGTIMTLSSWA----------------------TSSVEE----VSST--GPG 63 (308)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~~a~-~a~~~g~~~~~s~~~----------------------~~~~e~----i~~~--~~~ 63 (308)
|+++|||+|. + |.+|++ .|..+|+.+ ++..+ +.+++. +... .+.
T Consensus 1 ~~~lApMag~--t----d~~f~~~~~~~~g~~~-~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~ 73 (233)
T cd02911 1 PVALASMAGI--T----DGDFCRKRADHAGLVF-LGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNV 73 (233)
T ss_pred CceeeecCCC--c----CHHHHHhhCccCCEEE-EcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCC
Confidence 8999999997 7 559999 666777654 43321 112221 1111 123
Q ss_pred CceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhH
Q 021739 64 IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASY 143 (308)
Q Consensus 64 ~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (308)
+..+|++ +.|++.+.++++.+++. ++.|++|++||.. ++.. .+.++.
T Consensus 74 p~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~---------------~v~~----------------~g~G~~ 120 (233)
T cd02911 74 LVGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQP---------------EMVE----------------AGAGEA 120 (233)
T ss_pred eEEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcH---------------HHhc----------------CCcchH
Confidence 7899999 99999999999988774 6999999999975 2211 122344
Q ss_pred hhhhcccccCHHHHHHHHHhcCCCEEEEecC-----CHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHcc
Q 021739 144 VANQIDRSLNWKDVKWLQTITSLPILVKGVL-----TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK 218 (308)
Q Consensus 144 ~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~-----~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 218 (308)
++ .||+...++++.+++ .++||++|++. +.+.++.+.++|+|+|++++. .+ +....+..+.+++ .
T Consensus 121 Ll--~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~--~~--g~~ad~~~I~~i~--~- 190 (233)
T cd02911 121 LL--KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAM--DP--GNHADLKKIRDIS--T- 190 (233)
T ss_pred Hc--CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcC--CC--CCCCcHHHHHHhc--C-
Confidence 44 378888899999998 59999999973 245688999999999877542 11 1244677777664 3
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 021739 219 GRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 219 ~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
++|||++|||.+++|+.+++..|||+||+||+
T Consensus 191 -~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 -ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred -CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 79999999999999999999999999999995
No 47
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2e-20 Score=170.80 Aligned_cols=207 Identities=19% Similarity=0.214 Sum_probs=160.2
Q ss_pred cCcccCCce-EeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCC-CH-------HHHhccCC--CCceEEeeecCC
Q 021739 6 LGFNISMPI-MIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS-SV-------EEVSSTGP--GIRFFQLYVTKH 74 (308)
Q Consensus 6 ~g~~~~~Pi-~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~-~~-------e~i~~~~~--~~~~~Ql~~~~d 74 (308)
|..+...|. ++|||-.+ + +.++|+.+++.|...+.|.|--. ++ ..-...++ .|+++|+- +.|
T Consensus 12 f~~~~~~~~ri~APMvd~--S----~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~nd 84 (358)
T KOG2335|consen 12 FWSKQGRPKRIVAPMVDY--S----ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GND 84 (358)
T ss_pred hhhhcCCcccccCCcccc--c----HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CCC
Confidence 444444553 59999776 5 88999999999999999988311 11 10111223 48999987 899
Q ss_pred chHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCH
Q 021739 75 RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 154 (308)
Q Consensus 75 ~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 154 (308)
++.+.++++.+.... ++|+||+|||.. +.. ..+.+.+++ .++++.-
T Consensus 85 p~~ll~Aa~lv~~y~-D~idlNcGCPq~----------------~a~---------------~g~yGa~L~--~~~eLv~ 130 (358)
T KOG2335|consen 85 PENLLKAARLVQPYC-DGIDLNCGCPQK----------------VAK---------------RGGYGAFLM--DNPELVG 130 (358)
T ss_pred HHHHHHHHHHhhhhc-CcccccCCCCHH----------------HHh---------------cCCccceec--cCHHHHH
Confidence 999999999888876 999999999953 100 012234555 3677778
Q ss_pred HHHHHHHHhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEecccccCC--CCCcchHHHHHHHHHHccCCCeEEEe
Q 021739 155 KDVKWLQTITSLPILVKGVL------TAEDASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLD 226 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~------~~e~a~~~~~~G~d~i~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~ 226 (308)
++++++++.++.||.+|++. |.+.++.+.++|++.++|+++...+. ..++..|+.++.+++.+.+ +|||++
T Consensus 131 e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaN 209 (358)
T KOG2335|consen 131 EMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIAN 209 (358)
T ss_pred HHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEee
Confidence 89999999999999999983 45679999999999999977654332 2567899999999998854 999999
Q ss_pred cCCCCHHHHHHHHH-cCCCEEEEchHHHH
Q 021739 227 GGVRRGTDVFKALA-LGASGVFVGRPVPF 254 (308)
Q Consensus 227 GGI~~~~d~~k~l~-~GAd~V~ig~~~l~ 254 (308)
|+|.+.+|+..++. .|||+||.|+.++.
T Consensus 210 GnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 210 GNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred CCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 99999999999999 99999999996554
No 48
>PLN02826 dihydroorotate dehydrogenase
Probab=99.86 E-value=1.9e-19 Score=171.38 Aligned_cols=123 Identities=28% Similarity=0.462 Sum_probs=99.9
Q ss_pred cCCCEEEEec--CCHHH----HHHHHHcCCcEEEEecccc-c----------CCC---CCc----chHHHHHHHHHHccC
Q 021739 164 TSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGA-R----------QLD---YVP----ATVMALEEVVQAAKG 219 (308)
Q Consensus 164 ~~~Pv~vK~~--~~~e~----a~~~~~~G~d~i~v~~~gg-~----------~~~---~~~----~~~~~l~~i~~~~~~ 219 (308)
.++||++|+. .+.++ ++.+.++|+|+|+++|+.- + +.. +++ .+...+.++++.+.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999996 44333 7888999999999998531 1 011 222 245677888877766
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021739 220 RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 294 (308)
Q Consensus 220 ~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (308)
++|||++|||.|++|+.+++.+||++|+++|++++ +|+ .++..++++|.++|...|+++++|+++..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp----~~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGP----ALIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCH----HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 89999999999999999999999999999999998 376 47788999999999999999999998753
No 49
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.85 E-value=3.4e-19 Score=168.45 Aligned_cols=142 Identities=24% Similarity=0.324 Sum_probs=113.9
Q ss_pred cCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccc-----cCCC-CCcchHHHHHHHHHHcc-CCCeE
Q 021739 152 LNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGA-----RQLD-YVPATVMALEEVVQAAK-GRVPV 223 (308)
Q Consensus 152 ~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg-----~~~~-~~~~~~~~l~~i~~~~~-~~ipv 223 (308)
...+.++++|+.+ +.+|+++.+.|.++++.+.++|+|+|.++...| +... .+.|++..+.++.+.+. .++||
T Consensus 180 ~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpV 259 (404)
T PRK06843 180 RIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICI 259 (404)
T ss_pred hHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeE
Confidence 3457899999987 799999999999999999999999999854333 2222 34677888777766543 36999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHHHHh--------------------ccc-------------------------
Q 021739 224 FLDGGVRRGTDVFKALALGASGVFVGRPVPFS--------------------LAV------------------------- 258 (308)
Q Consensus 224 ia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~--------------------~~~------------------------- 258 (308)
|++|||+++.|+.|+|++||++||+|++|.-. |++
T Consensus 260 IAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~ 339 (404)
T PRK06843 260 IADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVP 339 (404)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCC
Confidence 99999999999999999999999999988431 110
Q ss_pred CCH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 259 DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 259 ~G~-------~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
+|- -.+.+++.++..+|++.|.++|..+|.||++.
T Consensus 340 eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~ 381 (404)
T PRK06843 340 EGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN 381 (404)
T ss_pred CccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence 010 01789999999999999999999999999864
No 50
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.85 E-value=2.4e-19 Score=163.62 Aligned_cols=229 Identities=19% Similarity=0.151 Sum_probs=164.7
Q ss_pred ccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhc----cCCC-CceEEeeecCCchHHHHHHH
Q 021739 9 NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS----TGPG-IRFFQLYVTKHRNVDAQLVK 83 (308)
Q Consensus 9 ~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~----~~~~-~~~~Ql~~~~d~~~~~~~~~ 83 (308)
.+..|++-|+|... + +..+|.+.+++|.-.++. ...++|+..+ ..+. ...+-+-.+..++..+++-+
T Consensus 44 ~~giPii~AnMdTV--~----~~~mA~~la~~g~~~~iH--k~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~ 115 (346)
T PRK05096 44 WSGVPIIAANMDTV--G----TFEMAKALASFDILTAVH--KHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQ 115 (346)
T ss_pred ccCCceEecCCCcc--c----cHHHHHHHHHCCCeEEEe--cCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHH
Confidence 35689999999654 4 679999999999888776 3345554332 2211 11111233444444444433
Q ss_pred HHHH-cCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHH
Q 021739 84 RAER-AGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 162 (308)
Q Consensus 84 ~~~~-~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 162 (308)
.++. .|+++|.|.+ . .+ +.....+.|++||+
T Consensus 116 L~~~~~g~D~iviD~--A-------------------------------------hG---------hs~~~i~~ik~ik~ 147 (346)
T PRK05096 116 ILALSPALNFICIDV--A-------------------------------------NG---------YSEHFVQFVAKARE 147 (346)
T ss_pred HHhcCCCCCEEEEEC--C-------------------------------------CC---------cHHHHHHHHHHHHH
Confidence 3332 6888887653 1 11 12223578999999
Q ss_pred hc-CCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc----CC--CCCcchHHHHHHHHHHcc-CCCeEEEecCCCCHHH
Q 021739 163 IT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QL--DYVPATVMALEEVVQAAK-GRVPVFLDGGVRRGTD 234 (308)
Q Consensus 163 ~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~----~~--~~~~~~~~~l~~i~~~~~-~~ipvia~GGI~~~~d 234 (308)
.+ +++|+...+.|.|.++.|+++|||+|.|.-..|. +. .-+.|.+.++.+++++.. ..+|||++|||++..|
T Consensus 148 ~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGD 227 (346)
T PRK05096 148 AWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGD 227 (346)
T ss_pred hCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccH
Confidence 86 7999999999999999999999999998765542 11 235678889988877653 3699999999999999
Q ss_pred HHHHHHcCCCEEEEchHHHH--------------------hccc-----------------CCH-------HHHHHHHHH
Q 021739 235 VFKALALGASGVFVGRPVPF--------------------SLAV-----------------DGE-------AGVRKVLQM 270 (308)
Q Consensus 235 ~~k~l~~GAd~V~ig~~~l~--------------------~~~~-----------------~G~-------~~v~~~i~~ 270 (308)
+.|||++|||+||+|+.|-- +|++ +|. -.+.+++..
T Consensus 228 I~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~ 307 (346)
T PRK05096 228 VAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARD 307 (346)
T ss_pred HHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccccccCceEEeccCCcHHHHHHH
Confidence 99999999999999998731 1111 111 128899999
Q ss_pred HHHHHHHHHHHcCCCCHhhhccc
Q 021739 271 LRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 271 l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
+..+|+..|.++|..+|.||+++
T Consensus 308 l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 308 ILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred HHHHHHHHHcccCcCcHHHHHhC
Confidence 99999999999999999999655
No 51
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.84 E-value=2.6e-19 Score=164.45 Aligned_cols=207 Identities=21% Similarity=0.255 Sum_probs=150.9
Q ss_pred eeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCCC-----------------------------
Q 021739 3 TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS----------------------------- 52 (308)
Q Consensus 3 t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~~----------------------------- 52 (308)
|+++|.++++||++|+.... . +....+.+.+.|.+.++. |....
T Consensus 1 ~~~~G~~~~nPv~~aag~~~--~----~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL--K----TGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC--C----CHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 68999999999999996553 2 446777788888887764 22100
Q ss_pred ------CH----HHHhcc----CCCCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCc
Q 021739 53 ------SV----EEVSST----GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPH 118 (308)
Q Consensus 53 ------~~----e~i~~~----~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~ 118 (308)
.+ +++.+. ...+.++|+. +.+.+.+.+.++++.+.|+++|++|++||.....
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~------------- 140 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGG------------- 140 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------------
Confidence 01 122221 1236788987 7788888899999999999999999999964100
Q ss_pred cccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecC--C----HHHHHHHHHcCCcEEEE
Q 021739 119 LTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL--T----AEDASLAIQYGAAGIIV 192 (308)
Q Consensus 119 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~--~----~e~a~~~~~~G~d~i~v 192 (308)
. . +. .+++...+.++++|+.+++||++|+.. + .+.++.+.++|+|+|++
T Consensus 141 -------------------~---~-~~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 141 -------------------R---Q-LG--QDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred -------------------c---c-cc--cCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 0 10 245556688999999889999999873 3 34578899999999999
Q ss_pred ecccc-cC------------CC---CCc----chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 021739 193 SNHGA-RQ------------LD---YVP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 193 ~~~gg-~~------------~~---~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~ 252 (308)
+|+.. .. .. .+. ..++.+.++++.+..++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 87521 10 00 111 135566777776644799999999999999999999999999999999
Q ss_pred HH
Q 021739 253 PF 254 (308)
Q Consensus 253 l~ 254 (308)
+.
T Consensus 276 ~~ 277 (289)
T cd02810 276 MW 277 (289)
T ss_pred Hh
Confidence 87
No 52
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.81 E-value=2.5e-18 Score=160.51 Aligned_cols=218 Identities=17% Similarity=0.196 Sum_probs=144.9
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCCC---------------------------
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS--------------------------- 52 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~~--------------------------- 52 (308)
|+|+++|.++++||++|+= ... +....+.+.+.|.++++. |....
T Consensus 39 L~~~~~Gl~l~nPi~~AsG-----~~~--~~~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n 111 (327)
T cd04738 39 LEVEVFGLTFPNPVGLAAG-----FDK--NAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNN 111 (327)
T ss_pred cceEECCEECCCCCEeCcC-----CCC--CHHHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCC
Confidence 6899999999999999772 122 334445555788887664 22110
Q ss_pred -C----HHHHhccC--CCCceEEeeecCC-------chHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCc
Q 021739 53 -S----VEEVSSTG--PGIRFFQLYVTKH-------RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPH 118 (308)
Q Consensus 53 -~----~e~i~~~~--~~~~~~Ql~~~~d-------~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~ 118 (308)
. ++++.... ..|.++|+. +.+ .+.+.+.++++.. .+++|++|+.||....
T Consensus 112 ~g~~~~~~~l~~~~~~~~plivsi~-g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g-------------- 175 (327)
T cd04738 112 DGADAVAKRLKKRRPRGGPLGVNIG-KNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPG-------------- 175 (327)
T ss_pred ccHHHHHHHHHHhccCCCeEEEEEe-CCCCCcccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCc--------------
Confidence 0 12232222 236788886 444 3444455555443 3889999999996410
Q ss_pred cccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcC-----CCEEEEecCC------HHHHHHHHHcCC
Q 021739 119 LTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS-----LPILVKGVLT------AEDASLAIQYGA 187 (308)
Q Consensus 119 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~-----~Pv~vK~~~~------~e~a~~~~~~G~ 187 (308)
.. . ..+++...+.++++|+.++ +||++|+... .+.++.+.++|+
T Consensus 176 -------------------~~---~---~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGa 230 (327)
T cd04738 176 -------------------LR---D---LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGV 230 (327)
T ss_pred -------------------cc---c---ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 00 0 0244555678999998875 9999999742 234788899999
Q ss_pred cEEEEecccc-------------cCCCCCc----chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 188 AGIIVSNHGA-------------RQLDYVP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 188 d~i~v~~~gg-------------~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
|+|+++|+.. .+..+++ ..+..+.++++.+..++|||++|||+|++|+.+++.+|||+||+||
T Consensus 231 d~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~ 310 (327)
T cd04738 231 DGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYT 310 (327)
T ss_pred cEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccH
Confidence 9999988521 0011122 2356777777777557999999999999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHH
Q 021739 251 PVPFSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 251 ~~l~~~~~~G~~~v~~~i~~l~~~ 274 (308)
++++. |+. ++..++++
T Consensus 311 ~~~~~----gP~----~~~~i~~~ 326 (327)
T cd04738 311 GLVYE----GPG----LVKRIKRE 326 (327)
T ss_pred HHHhh----CcH----HHHHHHhc
Confidence 99873 553 44455444
No 53
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.79 E-value=2.5e-18 Score=151.84 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=121.5
Q ss_pred CCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhh
Q 021739 63 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 142 (308)
Q Consensus 63 ~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~ 142 (308)
.+.++|+. +.+++...+.++.+.+ ++++|+||++||++ ++.. .+.++
T Consensus 68 ~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~---------------~v~~----------------~g~G~ 114 (231)
T TIGR00736 68 ALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP---------------EITE----------------IGIGQ 114 (231)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH---------------HHcC----------------CCCch
Confidence 48899998 8899999999888866 79999999999986 2221 12233
Q ss_pred HhhhhcccccCHHHHHHHHHhcCCCEEEEecCC------HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHH
Q 021739 143 YVANQIDRSLNWKDVKWLQTITSLPILVKGVLT------AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQA 216 (308)
Q Consensus 143 ~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~------~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~ 216 (308)
.++ .||+...+.++.+++ .++||++|++.. .+.++.+.++|+|+|+|+. ++.. .+...|+.++++++.
T Consensus 115 ~Ll--~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~--~~~g-~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELL--KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA--MYPG-KPYADMDLLKILSEE 188 (231)
T ss_pred hhc--CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee--CCCC-CchhhHHHHHHHHHh
Confidence 444 378888889999994 589999999842 3668999999999999953 2110 122578999999887
Q ss_pred ccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 217 AKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 217 ~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+. .+|||++|||+|++|+.+++..|||+||+||+.+.+
T Consensus 189 ~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 189 FN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred cC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 62 399999999999999999999999999999998864
No 54
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.78 E-value=1.8e-17 Score=158.24 Aligned_cols=260 Identities=21% Similarity=0.197 Sum_probs=178.7
Q ss_pred ccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHHHHHHHHHc
Q 021739 9 NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERA 88 (308)
Q Consensus 9 ~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~~~~~~~~~ 88 (308)
.+..||.++.|+++.++ ++...++++++.+.|.....+|.. .+.++. ......+.|+- ......+.+.+..
T Consensus 164 ~i~~~~~~~aMS~GAlS-~eA~~alA~a~~~~G~~sntGEGG-e~~~~~--~~~~s~I~Qva-SGRFGV~~~yL~~---- 234 (485)
T COG0069 164 ELKKRFVTGAMSFGALS-KEAHEALARAMNRIGTKSNTGEGG-EDPERY--EDGRSAIKQVA-SGRFGVTPEYLAN---- 234 (485)
T ss_pred eeeecccccccCCcccc-HHHHHHHHHHHHHhcCcccCCCCC-CCHHHh--ccccceEEEec-cccCccCHHHhCc----
Confidence 45679999999999884 778899999999999877655554 444433 12236788875 4444555444333
Q ss_pred CCcEEEEecC---CCCCCcchHHhhhccCCCC-ccccccccccccccCCCCCCchhhhHhhhhccccc-CHH----HHHH
Q 021739 89 GFKAIALTVD---TPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NWK----DVKW 159 (308)
Q Consensus 89 g~~~i~i~~~---~p~~~~r~~~~~~~~~~p~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~----~i~~ 159 (308)
++.|.|-+. -|..| -.+|. ||+.- .+.... .......++|..++++ +.+ .|..
T Consensus 235 -a~~ieIKiaQGAKPGeG---------G~Lpg~KV~~~---IA~~R~-----~~pG~~~ISP~pHHDiysieDLaqlI~d 296 (485)
T COG0069 235 -ADAIEIKIAQGAKPGEG---------GQLPGEKVTPE---IAKTRG-----SPPGVGLISPPPHHDIYSIEDLAQLIKD 296 (485)
T ss_pred -cceEEEEeccCCCCCCC---------CCCCCccCCHH---HHHhcC-----CCCCCCCcCCCCcccccCHHHHHHHHHH
Confidence 455666653 23221 11232 44421 000000 1112234555555554 333 4666
Q ss_pred HHHhc-CCCEEEEecC--CHHHHHH-HHHcCCcEEEEeccc-ccCC-------CCCcchHHHHHHHHHHc-----cCCCe
Q 021739 160 LQTIT-SLPILVKGVL--TAEDASL-AIQYGAAGIIVSNHG-ARQL-------DYVPATVMALEEVVQAA-----KGRVP 222 (308)
Q Consensus 160 ir~~~-~~Pv~vK~~~--~~e~a~~-~~~~G~d~i~v~~~g-g~~~-------~~~~~~~~~l~~i~~~~-----~~~ip 222 (308)
+|+.. ..+|.||++. ..+.+.. +++++||.|+|+++. ||.. ..|.|....|.++.+.+ ++++.
T Consensus 297 Lk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~ 376 (485)
T COG0069 297 LKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVK 376 (485)
T ss_pred HHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeE
Confidence 77664 4679999984 3444443 899999999999873 4431 24666666777776644 46799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccC-----------------------------CHHHHHHHHHHHHH
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-----------------------------GEAGVRKVLQMLRD 273 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~i~~l~~ 273 (308)
|+++||++|+.|+++++++|||.|.+|++.+.++.|. .++.|.+++..+.+
T Consensus 377 l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~ 456 (485)
T COG0069 377 LIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAE 456 (485)
T ss_pred EEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877542 35779999999999
Q ss_pred HHHHHHHHcCCCCHhhhcccce
Q 021739 274 EFELTMALSGCRSLKEITRNHI 295 (308)
Q Consensus 274 ~l~~~m~~~G~~~i~~l~~~~~ 295 (308)
|++++|..+|.+++++|+++..
T Consensus 457 e~rella~lG~~~l~el~g~~d 478 (485)
T COG0069 457 ELRELLAALGKRSLSELIGRTD 478 (485)
T ss_pred HHHHHHHHhCCCCHHHHhcchh
Confidence 9999999999999999997743
No 55
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.78 E-value=7.5e-18 Score=164.63 Aligned_cols=140 Identities=22% Similarity=0.291 Sum_probs=116.4
Q ss_pred HHHHHHHHHhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEecccc-----c-CCCCCcchHHHHHHHHHHc-------c
Q 021739 154 WKDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGA-----R-QLDYVPATVMALEEVVQAA-------K 218 (308)
Q Consensus 154 ~~~i~~ir~~~~--~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg-----~-~~~~~~~~~~~l~~i~~~~-------~ 218 (308)
.+.|+++|+.++ ++|+...+.+.++++.+.++|||+|.+++++| + +...+.|.+.++.+++++. .
T Consensus 271 ~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g 350 (502)
T PRK07107 271 KRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETG 350 (502)
T ss_pred HHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcC
Confidence 578999999885 55666668999999999999999999999888 3 4556788999998887754 2
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------hccc--------------------
Q 021739 219 GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF--------------------SLAV-------------------- 258 (308)
Q Consensus 219 ~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~--------------------~~~~-------------------- 258 (308)
.++|||++|||+++.|++|||++|||+||+||+|-- +|++
T Consensus 351 ~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~ 430 (502)
T PRK07107 351 VYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFE 430 (502)
T ss_pred CcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccC
Confidence 249999999999999999999999999999999832 1111
Q ss_pred CCH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 259 DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 259 ~G~-------~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
+|. -.+.+++..+..+|++.|.++|..+|.||+++
T Consensus 431 egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 431 EGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred CccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 111 12889999999999999999999999999866
No 56
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.77 E-value=4.9e-18 Score=156.53 Aligned_cols=224 Identities=23% Similarity=0.278 Sum_probs=136.3
Q ss_pred CceeecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeec-CCCCC---------------------------
Q 021739 1 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS--------------------------- 52 (308)
Q Consensus 1 ~~t~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s-~~~~~--------------------------- 52 (308)
|+|+++|.++++||++|+ +. .. +....+.+.++|.++++. +....
T Consensus 2 L~~~~~Gl~l~nPi~~as-G~----~~--~~~~~~~~~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n 74 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS-GL----DK--NGEEIKRLFDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPN 74 (295)
T ss_dssp G-EEETTEEESSSEEE-T-TS----ST--SSHHHHHHHHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-B
T ss_pred ccEEECCEEcCCCcEECC-cC----CC--CchhhhhhhcCCccEEEeccccccccccccCCcEEeeccccccccccCCCh
Confidence 689999999999999986 21 22 224445677888777664 21110
Q ss_pred -CH----HHHhcc---CC---C-CceEEeeecCC---chHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCC
Q 021739 53 -SV----EEVSST---GP---G-IRFFQLYVTKH---RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 117 (308)
Q Consensus 53 -~~----e~i~~~---~~---~-~~~~Ql~~~~d---~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~ 117 (308)
.+ +++.+. .. . +.++.+. +.. .+...+.+++++ .|++++.+|+.||-..
T Consensus 75 ~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~-~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~-------------- 138 (295)
T PF01180_consen 75 PGLEYYLERLRPILKEAKKDVDIPVIASIN-GDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP-------------- 138 (295)
T ss_dssp SHHHHHHHHHHHTHHHTTCH-CEEEEEEE--TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST--------------
T ss_pred HHHHHHHHHHHHHhhhcccccceeEEEEee-cCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC--------------
Confidence 01 111111 11 1 2333333 333 344444445444 6677777777777420
Q ss_pred ccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecC---CH---HHHHHHHHcCCcEEE
Q 021739 118 HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL---TA---EDASLAIQYGAAGII 191 (308)
Q Consensus 118 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~---~~---e~a~~~~~~G~d~i~ 191 (308)
+ ...+. .+++...+.++.+++..++||++|+.. .. ..+..+.+.|+|+|+
T Consensus 139 ---------------------~-~~~~~--~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~ 194 (295)
T PF01180_consen 139 ---------------------G-GRPFG--QDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIV 194 (295)
T ss_dssp ---------------------T-SGGGG--GHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEE
T ss_pred ---------------------C-ccccc--cCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEE
Confidence 0 00000 133334567888888889999999985 22 235566688999999
Q ss_pred Eecccc----------cCCC-------CCc----chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 192 VSNHGA----------RQLD-------YVP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 192 v~~~gg----------~~~~-------~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
+.|... +... +++ .....+.++++.+..++|||++|||+|++|+.+++.+||++|++++
T Consensus 195 ~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~S 274 (295)
T PF01180_consen 195 AINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCS 274 (295)
T ss_dssp E---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESH
T ss_pred EecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheech
Confidence 877421 0010 122 2345667777777556999999999999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q 021739 251 PVPFSLAVDGEAGVRKVLQMLRDEFELTM 279 (308)
Q Consensus 251 ~~l~~~~~~G~~~v~~~i~~l~~~l~~~m 279 (308)
.+++. |+ .++..++++|+++|
T Consensus 275 al~~~----Gp----~~~~~i~~~L~~~l 295 (295)
T PF01180_consen 275 ALIYR----GP----GVIRRINRELEEWL 295 (295)
T ss_dssp HHHHH----GT----THHHHHHHHHHHHH
T ss_pred hhhhc----Cc----HHHHHHHHHHHhhC
Confidence 99874 56 46778888888876
No 57
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.76 E-value=4.3e-17 Score=152.39 Aligned_cols=106 Identities=17% Similarity=0.216 Sum_probs=79.7
Q ss_pred ccccCHHHHHHHHHhcC-------CCEEEEecCC------HHHHHHHHHcCCcEEEEecccc-------------cCCCC
Q 021739 149 DRSLNWKDVKWLQTITS-------LPILVKGVLT------AEDASLAIQYGAAGIIVSNHGA-------------RQLDY 202 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~-------~Pv~vK~~~~------~e~a~~~~~~G~d~i~v~~~gg-------------~~~~~ 202 (308)
+++...+.++++++.++ +||++|+..+ .+.++.+.++|+|+|++.|+.. ....+
T Consensus 187 ~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlS 266 (335)
T TIGR01036 187 YKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLS 266 (335)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCccc
Confidence 34445567888887765 9999999843 2347888999999999998531 00111
Q ss_pred Cc----chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 203 VP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 203 ~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
|+ .....+.++++.+..++|||++|||.+++|+.+++.+|||+|++||++++
T Consensus 267 G~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 267 GKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 22 23345566666665579999999999999999999999999999999987
No 58
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.73 E-value=2.2e-16 Score=154.44 Aligned_cols=144 Identities=26% Similarity=0.349 Sum_probs=117.2
Q ss_pred ccccCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc------CCCCCcchHHHHHHHHHHcc-CC
Q 021739 149 DRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR------QLDYVPATVMALEEVVQAAK-GR 220 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~------~~~~~~~~~~~l~~i~~~~~-~~ 220 (308)
+....++.|+++|+.+ ++||+++.+.+.++++.+.++|+|+|.++.+.|. ....+.|++.++.++.+.+. .+
T Consensus 265 ~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~ 344 (495)
T PTZ00314 265 NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERG 344 (495)
T ss_pred CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcC
Confidence 3444578999999986 7999999999999999999999999998644331 12356678888888876553 36
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------hccc------C---------------
Q 021739 221 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF--------------------SLAV------D--------------- 259 (308)
Q Consensus 221 ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~--------------------~~~~------~--------------- 259 (308)
+|+|++|||+++.|+.||+++||++||+|+.|.- +|++ .
T Consensus 345 v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~ 424 (495)
T PTZ00314 345 VPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKV 424 (495)
T ss_pred CeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccccccc
Confidence 9999999999999999999999999999998842 1110 0
Q ss_pred --CH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021739 260 --GE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITR 292 (308)
Q Consensus 260 --G~-------~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~ 292 (308)
|- ..+.+++..+..+|+..|.++|+.+|.||++
T Consensus 425 ~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 425 AQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred CCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 10 1388999999999999999999999999987
No 59
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.73 E-value=1.4e-16 Score=154.86 Aligned_cols=144 Identities=26% Similarity=0.286 Sum_probs=118.2
Q ss_pred cccCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccC------CCCCcchHHHHHHHHHHcc-CCC
Q 021739 150 RSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ------LDYVPATVMALEEVVQAAK-GRV 221 (308)
Q Consensus 150 ~~~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-~~i 221 (308)
+....+.+++||+.+ ++||++..+.|.+.++.|.++|+|+|.++..+|+. ...+.++..++.++++... ..+
T Consensus 250 ~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~ 329 (475)
T TIGR01303 250 QVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGG 329 (475)
T ss_pred cHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCC
Confidence 344567899999876 89999988999999999999999999998877643 2346788888888765443 269
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH---------------------hccc----------------------
Q 021739 222 PVFLDGGVRRGTDVFKALALGASGVFVGRPVPF---------------------SLAV---------------------- 258 (308)
Q Consensus 222 pvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~---------------------~~~~---------------------- 258 (308)
|||++|||+++.|+.|||++||++||+|+.|-- +|++
T Consensus 330 ~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v 409 (475)
T TIGR01303 330 HVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALF 409 (475)
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccc
Confidence 999999999999999999999999999997721 1111
Q ss_pred -CCHHH-----------HHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 259 -DGEAG-----------VRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 259 -~G~~~-----------v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
+|.++ +.+++.++..+|+..|.++|..+|.||+.+
T Consensus 410 ~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~ 456 (475)
T TIGR01303 410 EEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHER 456 (475)
T ss_pred cCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhC
Confidence 23221 788999999999999999999999999877
No 60
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.72 E-value=4e-16 Score=164.32 Aligned_cols=256 Identities=18% Similarity=0.131 Sum_probs=176.8
Q ss_pred CCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHHHHHHHHHcCC
Q 021739 11 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGF 90 (308)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g~ 90 (308)
-.+|.+++|+++.++ ++...++++++++.|+....+|.. ...++... .....++|+- ......+.+.+.. +
T Consensus 858 ~~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~Qia-SGrFGv~~e~l~~-----a 928 (1485)
T PRK11750 858 FKRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVA-SGRFGVTPAYLVN-----A 928 (1485)
T ss_pred hcccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEcc-CCcCCCCHHHhcc-----C
Confidence 347899999998774 778899999999999887555544 45554432 2235788876 4445555555443 5
Q ss_pred cEEEEecCC---CCCCcchHHhhhccCCCC-ccccccccccccccCCCCCCchhhhHhhhhccccc-CHHH----HHHHH
Q 021739 91 KAIALTVDT---PRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NWKD----VKWLQ 161 (308)
Q Consensus 91 ~~i~i~~~~---p~~~~r~~~~~~~~~~p~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~----i~~ir 161 (308)
+.|.|.++- |.. +..+|. ||+.. .+.... .......++|...+++ +.|. |.++|
T Consensus 929 ~~ieIKi~QGAKPG~---------GG~Lpg~KV~~~---IA~~R~-----~~~G~~liSP~phhdiySieDL~qlI~~Lk 991 (1485)
T PRK11750 929 EVLQIKVAQGAKPGE---------GGQLPGDKVNPL---IARLRY-----SVPGVTLISPPPHHDIYSIEDLAQLIFDLK 991 (1485)
T ss_pred CEEEEEecCCCCCCC---------CCcCccccCCHH---HHHHcC-----CCCCCCCCCCCCCccCCCHHHHHHHHHHHH
Confidence 677777641 322 122232 44421 111101 1122345566566665 4444 66667
Q ss_pred Hhc-CCCEEEEecCC---HHHHHHHHHcCCcEEEEeccc-ccCC-------CCCcchHHHHHHHHHHc-----cCCCeEE
Q 021739 162 TIT-SLPILVKGVLT---AEDASLAIQYGAAGIIVSNHG-ARQL-------DYVPATVMALEEVVQAA-----KGRVPVF 224 (308)
Q Consensus 162 ~~~-~~Pv~vK~~~~---~e~a~~~~~~G~d~i~v~~~g-g~~~-------~~~~~~~~~l~~i~~~~-----~~~ipvi 224 (308)
+.. +.||.||.+.. ...+.-+.++|+|+|+|+++. |+.- +.+.|....|.++.+.+ ++++.|+
T Consensus 992 ~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~ 1071 (1485)
T PRK11750 992 QVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQ 1071 (1485)
T ss_pred HhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEE
Confidence 665 67999999843 234446778999999999974 3321 23556556677776644 4579999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccC----------------------------CHHHHHHHHHHHHHHHH
Q 021739 225 LDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD----------------------------GEAGVRKVLQMLRDEFE 276 (308)
Q Consensus 225 a~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~----------------------------G~~~v~~~i~~l~~~l~ 276 (308)
++||++|+.|+++++++|||.|.+|+++|.+++|. .++.|.+++..+.+|++
T Consensus 1072 a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~ 1151 (1485)
T PRK11750 1072 VDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETR 1151 (1485)
T ss_pred EcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987662 13679999999999999
Q ss_pred HHHHHcCCCCHhhhcc
Q 021739 277 LTMALSGCRSLKEITR 292 (308)
Q Consensus 277 ~~m~~~G~~~i~~l~~ 292 (308)
.+|..+|.++++||.+
T Consensus 1152 ~~la~lG~~s~~elvG 1167 (1485)
T PRK11750 1152 EWMAQLGVRSLEDLIG 1167 (1485)
T ss_pred HHHHHhCCCCHHHhcC
Confidence 9999999999999943
No 61
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.72 E-value=2.5e-16 Score=152.90 Aligned_cols=142 Identities=28% Similarity=0.378 Sum_probs=116.0
Q ss_pred ccCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc-----C-CCCCcchHHHHHHHHHHcc-CCCe
Q 021739 151 SLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR-----Q-LDYVPATVMALEEVVQAAK-GRVP 222 (308)
Q Consensus 151 ~~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~-----~-~~~~~~~~~~l~~i~~~~~-~~ip 222 (308)
...++.|+++|+.+ ++||+++.+.+.++++.+.++|+|+|.++.+.|. . ...+.|++.++.++++... .++|
T Consensus 250 ~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vp 329 (450)
T TIGR01302 250 IYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIP 329 (450)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCe
Confidence 34568899999984 8999999999999999999999999998755441 1 2346778888888876543 3799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------hccc------------------------
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVFVGRPVPF--------------------SLAV------------------------ 258 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ig~~~l~--------------------~~~~------------------------ 258 (308)
||++|||+++.|+.|||++||++||+|+.|.- +|++
T Consensus 330 viadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~~~ 409 (450)
T TIGR01302 330 VIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFVP 409 (450)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccccC
Confidence 99999999999999999999999999998841 1111
Q ss_pred CCH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021739 259 DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITR 292 (308)
Q Consensus 259 ~G~-------~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~ 292 (308)
+|- -.+.+++.++..+|++.|.++|+.++.||+.
T Consensus 410 egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 450 (450)
T TIGR01302 410 EGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELRE 450 (450)
T ss_pred CceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHhC
Confidence 111 1388999999999999999999999999973
No 62
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.71 E-value=2.7e-16 Score=153.94 Aligned_cols=143 Identities=24% Similarity=0.298 Sum_probs=113.6
Q ss_pred ccccCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc----CCC--CCcc---hHHHHHHHHHHcc
Q 021739 149 DRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLD--YVPA---TVMALEEVVQAAK 218 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~----~~~--~~~~---~~~~l~~i~~~~~ 218 (308)
+....|+.|++||+.+ +.+|+++.+.+.++++.+.++|+|+|.+++|.|. +.. .+.+ ++..+.++.+..
T Consensus 272 ~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~- 350 (505)
T PLN02274 272 DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH- 350 (505)
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-
Confidence 3445689999999987 5999999999999999999999999999876652 221 1222 344455555443
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh--------------------ccc--------------------
Q 021739 219 GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS--------------------LAV-------------------- 258 (308)
Q Consensus 219 ~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~--------------------~~~-------------------- 258 (308)
++|||++|||+++.|+.|||++||++||+|+.|... |++
T Consensus 351 -~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~ 429 (505)
T PLN02274 351 -GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLK 429 (505)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccc
Confidence 799999999999999999999999999999988521 110
Q ss_pred --CCH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 259 --DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 259 --~G~-------~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
+|- -.+.+++.++..+|+..|.++|+.+|.||+.+
T Consensus 430 v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 430 IAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred cCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 111 12889999999999999999999999999877
No 63
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.70 E-value=7.6e-16 Score=150.97 Aligned_cols=141 Identities=26% Similarity=0.385 Sum_probs=116.4
Q ss_pred CHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccc-----cCC-CCCcchHHHHHHHHHHcc-CCCeEE
Q 021739 153 NWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGA-----RQL-DYVPATVMALEEVVQAAK-GRVPVF 224 (308)
Q Consensus 153 ~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg-----~~~-~~~~~~~~~l~~i~~~~~-~~ipvi 224 (308)
.++.++++++++ ++||+++.+.+.++++.+.++|+|+|.++..++ +.. .++.|+++++.++++... .++|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 467899999987 899999999999999999999999999854332 322 356789999999887653 369999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHHh--------------------ccc------------------------CC
Q 021739 225 LDGGVRRGTDVFKALALGASGVFVGRPVPFS--------------------LAV------------------------DG 260 (308)
Q Consensus 225 a~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~--------------------~~~------------------------~G 260 (308)
++|||+++.|+.|||++|||+||+|+.|--. |++ +|
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 9999999999999999999999999987321 110 11
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 261 E-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 261 ~-------~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
. -.+.+++..+..+|++.|.++|+.+|.||+.+
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 0 13889999999999999999999999999855
No 64
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.68 E-value=9.8e-15 Score=135.02 Aligned_cols=183 Identities=22% Similarity=0.236 Sum_probs=129.5
Q ss_pred eecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHH-------hccCCCCceEEeeecCCch
Q 021739 4 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV-------SSTGPGIRFFQLYVTKHRN 76 (308)
Q Consensus 4 ~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i-------~~~~~~~~~~Ql~~~~d~~ 76 (308)
++|| ++.||+.+||++. ++ ..|+.++.+.|....++... .+++++ .+....|..+++.... +.
T Consensus 6 ~~lg--i~~Pii~apM~~~--s~----~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~-~~ 75 (307)
T TIGR03151 6 DLLG--IEYPIFQGGMAWV--AT----GSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLS-PF 75 (307)
T ss_pred HHhC--CCCCEEcCCCCCC--CC----HHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCC-CC
Confidence 3455 6799999999875 64 48999999999888777432 233332 2222335556654222 21
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHH
Q 021739 77 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 156 (308)
Q Consensus 77 ~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 156 (308)
..+.++.+.+.+++.+.++.+.| .+.
T Consensus 76 -~~~~~~~~~~~~v~~v~~~~g~p-----------------------------------------------------~~~ 101 (307)
T TIGR03151 76 -VDELVDLVIEEKVPVVTTGAGNP-----------------------------------------------------GKY 101 (307)
T ss_pred -HHHHHHHHHhCCCCEEEEcCCCc-----------------------------------------------------HHH
Confidence 23455556667887765532211 135
Q ss_pred HHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecc--cccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHH
Q 021739 157 VKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 234 (308)
Q Consensus 157 i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 234 (308)
++++++. +++|+. .+.+.++++.+.++|+|.|++.++ +|+. +..+++..++++++.+ ++|||+.|||.+++|
T Consensus 102 i~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~ 175 (307)
T TIGR03151 102 IPRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRG 175 (307)
T ss_pred HHHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHH
Confidence 6777664 677665 557899999999999999999875 2331 2335788889988776 799999999999999
Q ss_pred HHHHHHcCCCEEEEchHHHHhc
Q 021739 235 VFKALALGASGVFVGRPVPFSL 256 (308)
Q Consensus 235 ~~k~l~~GAd~V~ig~~~l~~~ 256 (308)
+.+++++|||+|++|+.|+...
T Consensus 176 ~~~al~~GA~gV~iGt~f~~t~ 197 (307)
T TIGR03151 176 MAAAFALGAEAVQMGTRFLCAK 197 (307)
T ss_pred HHHHHHcCCCEeecchHHhccc
Confidence 9999999999999999998753
No 65
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.66 E-value=3.8e-15 Score=139.88 Aligned_cols=206 Identities=18% Similarity=0.188 Sum_probs=151.2
Q ss_pred cCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCC--------HHHHhccC--CCCceEEeeecCCchHHH
Q 021739 10 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSS--------VEEVSSTG--PGIRFFQLYVTKHRNVDA 79 (308)
Q Consensus 10 ~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~--------~e~i~~~~--~~~~~~Ql~~~~d~~~~~ 79 (308)
+..-.++||++-. + |.++++.|+++|+..++|+|.-+. -..+...+ ++...+||- ++.++.+.
T Consensus 263 ~r~K~~LaPLTTv--G----NLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQla-g~~pdt~~ 335 (614)
T KOG2333|consen 263 FRDKKYLAPLTTV--G----NLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLA-GSKPDTAA 335 (614)
T ss_pred cccceeecccccc--C----CccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEec-cCChHHHH
Confidence 3457899999765 3 569999999999999999985331 11222222 346789998 88888888
Q ss_pred HHHHHH-HHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHH
Q 021739 80 QLVKRA-ERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 158 (308)
Q Consensus 80 ~~~~~~-~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 158 (308)
+..+.+ +...+++|+||++||.. -|. ++ +++.+++. .|......++
T Consensus 336 kaaq~i~e~~~VDFIDlN~GCPID---------------lvy------------~q----G~GsALl~--rp~rl~~~l~ 382 (614)
T KOG2333|consen 336 KAAQVIAETCDVDFIDLNMGCPID---------------LVY------------RQ----GGGSALLN--RPARLIRILR 382 (614)
T ss_pred HHHHHHHhhcceeeeeccCCCChh---------------eee------------cc----CCcchhhc--CcHHHHHHHH
Confidence 887754 45679999999999975 111 11 22334432 3444455566
Q ss_pred HHHHhc-CCCEEEEecCC--------HHHHHHHH-HcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 159 WLQTIT-SLPILVKGVLT--------AEDASLAI-QYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 159 ~ir~~~-~~Pv~vK~~~~--------~e~a~~~~-~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
...... .+||.||++.. .+...++. +.|+++|+++++...|.+.....|+.+.++.+.++..+|+|++|.
T Consensus 383 ~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGD 462 (614)
T KOG2333|consen 383 AMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGD 462 (614)
T ss_pred HHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCc
Confidence 665555 46999999732 23345555 899999999887766767777899999999988766699999999
Q ss_pred CCCHHHHHHHHHcC--CCEEEEch-----HHHHh
Q 021739 229 VRRGTDVFKALALG--ASGVFVGR-----PVPFS 255 (308)
Q Consensus 229 I~~~~d~~k~l~~G--Ad~V~ig~-----~~l~~ 255 (308)
|.|.+|-.+.+..+ .+.||||| ||||.
T Consensus 463 i~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFt 496 (614)
T KOG2333|consen 463 ILSWEDWYERLNQNPNVDSVMIARGALIKPWIFT 496 (614)
T ss_pred cccHHHHHHHhhcCCCcceEEeeccccccchHhh
Confidence 99999999888865 89999999 77764
No 66
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.62 E-value=1.6e-14 Score=140.60 Aligned_cols=141 Identities=27% Similarity=0.360 Sum_probs=115.5
Q ss_pred CHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc----CC--CCCcchHHHHHHHHHHcc-CCCeEE
Q 021739 153 NWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QL--DYVPATVMALEEVVQAAK-GRVPVF 224 (308)
Q Consensus 153 ~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~----~~--~~~~~~~~~l~~i~~~~~-~~ipvi 224 (308)
.++.|++||+.+ +++|++..+.|.+.++.|.++|+|+|.+.-..|. +. ..+.|.++++.++++... .++|||
T Consensus 255 ~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~vi 334 (479)
T PRK07807 255 MLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVW 334 (479)
T ss_pred HHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEE
Confidence 468899999987 7999999999999999999999999998655432 11 124578999998887543 269999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHHh---------------------cc-----------------------cCC
Q 021739 225 LDGGVRRGTDVFKALALGASGVFVGRPVPFS---------------------LA-----------------------VDG 260 (308)
Q Consensus 225 a~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~---------------------~~-----------------------~~G 260 (308)
++|||+++.|+.|+|++||++||+|+.|.-. |+ .+|
T Consensus 335 a~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eG 414 (479)
T PRK07807 335 ADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEEG 414 (479)
T ss_pred ecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCCC
Confidence 9999999999999999999999999987421 10 012
Q ss_pred HH-----------HHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 261 EA-----------GVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 261 ~~-----------~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
-+ .+.+++..+...||..|.++|..+|.||+.+
T Consensus 415 v~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~ 458 (479)
T PRK07807 415 ISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER 458 (479)
T ss_pred ccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 11 1778899999999999999999999999877
No 67
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.61 E-value=4.5e-14 Score=126.61 Aligned_cols=122 Identities=22% Similarity=0.361 Sum_probs=97.4
Q ss_pred CCCEEEEecCCH------HHHHHHHHcCCcEEEEecccc-c-------------CCCCCc----chHHHHHHHHHHccCC
Q 021739 165 SLPILVKGVLTA------EDASLAIQYGAAGIIVSNHGA-R-------------QLDYVP----ATVMALEEVVQAAKGR 220 (308)
Q Consensus 165 ~~Pv~vK~~~~~------e~a~~~~~~G~d~i~v~~~gg-~-------------~~~~~~----~~~~~l~~i~~~~~~~ 220 (308)
+.|+++|+..+. +.+..+.+...|+++++|..- + ..-+++ .+.+.++..++.++++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 459999987542 345666789999999988531 1 001222 2455677777778889
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021739 221 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 294 (308)
Q Consensus 221 ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (308)
||||+.|||.++.|+.+.+.+||+.|+++++|.+ +|+ .+++.+++||...|+..|++++.|+++.+
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp----~i~~kIk~El~~ll~~kG~t~v~d~iG~~ 397 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGP----AIIEKIKRELSALLKAKGFTSVDDAIGKD 397 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCc----hhHHHHHHHHHHHHHhcCCCcHHHhccCC
Confidence 9999999999999999999999999999999987 476 47889999999999999999999988753
No 68
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.59 E-value=2e-13 Score=127.70 Aligned_cols=186 Identities=24% Similarity=0.315 Sum_probs=112.1
Q ss_pred ecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHh-------ccCCCCceEEeeecCCchH
Q 021739 5 VLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS-------STGPGIRFFQLYVTKHRNV 77 (308)
Q Consensus 5 ~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~-------~~~~~~~~~Ql~~~~d~~~ 77 (308)
+|| ++.||+.+||++. +.+ .|+-+..+.|...+++.. ..+.+++. +..+.|..++++.......
T Consensus 7 ~lg--i~~PIiqapM~~i--s~~----~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~ 77 (330)
T PF03060_consen 7 LLG--IKYPIIQAPMGGI--STP----ELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPA 77 (330)
T ss_dssp HHT---SSSEEE---TTT--SSH----HHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHH
T ss_pred HhC--CCcCEEcCCCCCC--ChH----HHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCcccc
Confidence 445 6799999999885 644 899999999998888843 33443322 2233467777775443222
Q ss_pred HH----------HHHHHHHHcCCc--------------EEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCC
Q 021739 78 DA----------QLVKRAERAGFK--------------AIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMD 133 (308)
Q Consensus 78 ~~----------~~~~~~~~~g~~--------------~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~ 133 (308)
.. ...+...+.+.. .+.++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~---------------------------------- 123 (330)
T PF03060_consen 78 DEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGL---------------------------------- 123 (330)
T ss_dssp HH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSS----------------------------------
T ss_pred hhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeeccc----------------------------------
Confidence 22 111222223322 22222211
Q ss_pred CCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecc--cccCCCCCcchHHHHH
Q 021739 134 KTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALE 211 (308)
Q Consensus 134 ~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~--gg~~~~~~~~~~~~l~ 211 (308)
| ..+.++++++ .++.++. .+.+.++++.+.+.|+|+|++.+. ||+......+++..+.
T Consensus 124 ----------------p--~~~~i~~l~~-~gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~ 183 (330)
T PF03060_consen 124 ----------------P--PPEVIERLHA-AGIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLP 183 (330)
T ss_dssp ----------------C---HHHHHHHHH-TT-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHH
T ss_pred ----------------c--hHHHHHHHHH-cCCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHH
Confidence 1 1245666665 4677665 457899999999999999999874 4443211114677778
Q ss_pred HHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 212 EVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 212 ~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
++.+.+ ++|||+.|||.++.++..+|++|||+|++|+.|+..
T Consensus 184 ~v~~~~--~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t 225 (330)
T PF03060_consen 184 QVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLAT 225 (330)
T ss_dssp HHHHH---SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTS
T ss_pred HHhhhc--CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEec
Confidence 888877 699999999999999999999999999999999864
No 69
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.57 E-value=9.2e-14 Score=130.09 Aligned_cols=226 Identities=16% Similarity=0.112 Sum_probs=142.1
Q ss_pred eeecCcccCCceEeccccCcccC----C-CHHHHHHHHHHHHcCCceeecCCCCC--------------C------HHHH
Q 021739 3 TTVLGFNISMPIMIAPTAFQKMA----H-PEGECATARAASAAGTIMTLSSWATS--------------S------VEEV 57 (308)
Q Consensus 3 t~~~g~~~~~Pi~iapm~~~~~~----~-~~~~~~~a~~a~~~g~~~~~s~~~~~--------------~------~e~i 57 (308)
.+|.+.++++.|+++||+..... . .+....+-+.-++-|+++++++.... + ++++
T Consensus 7 ~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l 86 (337)
T PRK13523 7 YTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKL 86 (337)
T ss_pred eeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHH
Confidence 46788999999999999632111 1 22345666666677899988764211 1 1112
Q ss_pred hcc---CCCCceEEeeecCC---------------------------c-------hHHHHHHHHHHHcCCcEEEEecCCC
Q 021739 58 SST---GPGIRFFQLYVTKH---------------------------R-------NVDAQLVKRAERAGFKAIALTVDTP 100 (308)
Q Consensus 58 ~~~---~~~~~~~Ql~~~~d---------------------------~-------~~~~~~~~~~~~~g~~~i~i~~~~p 100 (308)
... .....++||+.... . +.+.+..++++++||++|.|+..+
T Consensus 87 ~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah- 165 (337)
T PRK13523 87 VTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH- 165 (337)
T ss_pred HHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc-
Confidence 211 12267889864211 0 122344556778999999999873
Q ss_pred CCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecC------
Q 021739 101 RLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL------ 174 (308)
Q Consensus 101 ~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~------ 174 (308)
|+ +-+.|--| ..+.| -+ +. .+++- ....+..|+|+.||+.++.||.+|+..
T Consensus 166 --Gy----Ll~qFlSp-~~N~R-tD--------~y----GGsle---nR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~ 222 (337)
T PRK13523 166 --GY----LINEFLSP-LSNKR-TD--------EY----GGSPE---NRYRFLREIIDAVKEVWDGPLFVRISASDYHPG 222 (337)
T ss_pred --ch----HHHHhcCC-ccCCc-CC--------CC----CCCHH---HHHHHHHHHHHHHHHhcCCCeEEEecccccCCC
Confidence 11 11122211 01100 00 11 11111 235567899999999989999999873
Q ss_pred --CHH----HHHHHHHcCCcEEEEeccccc----CCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcC-C
Q 021739 175 --TAE----DASLAIQYGAAGIIVSNHGAR----QLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-A 243 (308)
Q Consensus 175 --~~e----~a~~~~~~G~d~i~v~~~gg~----~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~G-A 243 (308)
+.+ .++.+.++|+|+|.++.+... +...+ ..+....++++.+ ++||+++|+|++++++.++|+.| |
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~-~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPG-YQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcc-ccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 444 357888899999999764311 11111 1345556676665 79999999999999999999987 9
Q ss_pred CEEEEchHHHHh
Q 021739 244 SGVFVGRPVPFS 255 (308)
Q Consensus 244 d~V~ig~~~l~~ 255 (308)
|+|++||+++..
T Consensus 300 D~V~~gR~~iad 311 (337)
T PRK13523 300 DLIFIGRELLRN 311 (337)
T ss_pred ChHHhhHHHHhC
Confidence 999999999863
No 70
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.56 E-value=1.3e-12 Score=116.41 Aligned_cols=187 Identities=22% Similarity=0.259 Sum_probs=128.0
Q ss_pred CCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHH-------HHhccCCCCceEEeeecCCc-hHHHHHH
Q 021739 11 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVE-------EVSSTGPGIRFFQLYVTKHR-NVDAQLV 82 (308)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e-------~i~~~~~~~~~~Ql~~~~d~-~~~~~~~ 82 (308)
+.|++.|||.|. + +..+++++.+.|....++... .+.+ ++.+..+.+..+++. ..++ ....+.+
T Consensus 2 ~~pi~~a~m~g~--~----~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i-~~~~~~~~~~~~ 73 (236)
T cd04730 2 RYPIIQAPMAGV--S----TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLL-VPSSNPDFEALL 73 (236)
T ss_pred CCCEECCCCCCC--C----CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEe-cCCCCcCHHHHH
Confidence 579999999887 6 558999999998644443221 1222 222222224567777 4443 3566777
Q ss_pred HHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHH
Q 021739 83 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 162 (308)
Q Consensus 83 ~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 162 (308)
+.+.+.|++++.++.+.+ .+.++++++
T Consensus 74 ~~~~~~g~d~v~l~~~~~-----------------------------------------------------~~~~~~~~~ 100 (236)
T cd04730 74 EVALEEGVPVVSFSFGPP-----------------------------------------------------AEVVERLKA 100 (236)
T ss_pred HHHHhCCCCEEEEcCCCC-----------------------------------------------------HHHHHHHHH
Confidence 888889999987753210 123444443
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEeccc--ccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH
Q 021739 163 ITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHG--ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 240 (308)
Q Consensus 163 ~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~g--g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~ 240 (308)
.+++++.+ +.+.++++.+.+.|+|+|.+.+.+ |.........++.+.++++.. ++|+++.|||++++|+.+++.
T Consensus 101 -~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~ 176 (236)
T cd04730 101 -AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALA 176 (236)
T ss_pred -cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHH
Confidence 46777765 456788899999999999886542 221111124567788887665 799999999999999999999
Q ss_pred cCCCEEEEchHHHHhcccCCHH
Q 021739 241 LGASGVFVGRPVPFSLAVDGEA 262 (308)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~ 262 (308)
.|||+|++||.++....+.+..
T Consensus 177 ~GadgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 177 LGADGVQMGTRFLATEESGASP 198 (236)
T ss_pred cCCcEEEEchhhhcCcccCCCH
Confidence 9999999999999876555554
No 71
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.51 E-value=1e-13 Score=128.17 Aligned_cols=145 Identities=28% Similarity=0.365 Sum_probs=114.0
Q ss_pred ccccCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc----C--CCCCcchHHHHHHHHHHcc-CC
Q 021739 149 DRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----Q--LDYVPATVMALEEVVQAAK-GR 220 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~----~--~~~~~~~~~~l~~i~~~~~-~~ 220 (308)
...+.+++|+++|+.+ +++|+...+.+.+.++.|+++|||++.|....|. | ..-+.|...+++++.+... ..
T Consensus 275 nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~g 354 (503)
T KOG2550|consen 275 NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFG 354 (503)
T ss_pred cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcC
Confidence 4455678999999987 6889998999999999999999999999765442 2 2234555666666655432 36
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------Hhc------c----------------c
Q 021739 221 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSL------A----------------V 258 (308)
Q Consensus 221 ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l--------------------~~~------~----------------~ 258 (308)
+|+|++|||++..++.|||.+||+.||+|+-+- ++| . .
T Consensus 355 vpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvkiA 434 (503)
T KOG2550|consen 355 VPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKIA 434 (503)
T ss_pred CceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEeec
Confidence 999999999999999999999999999998541 111 0 0
Q ss_pred CCH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 259 DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 259 ~G~-------~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
+|. -.+.+++..+..+++..|...|++++++++..
T Consensus 435 QGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 435 QGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred cCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 111 23788999999999999999999999999875
No 72
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.51 E-value=1.1e-12 Score=122.59 Aligned_cols=227 Identities=19% Similarity=0.179 Sum_probs=139.3
Q ss_pred eeecCcccCCceEeccccCcccC---CCH-HHHHHHHHHHHcCCceeecCCCCC--------------C------HHHHh
Q 021739 3 TTVLGFNISMPIMIAPTAFQKMA---HPE-GECATARAASAAGTIMTLSSWATS--------------S------VEEVS 58 (308)
Q Consensus 3 t~~~g~~~~~Pi~iapm~~~~~~---~~~-~~~~~a~~a~~~g~~~~~s~~~~~--------------~------~e~i~ 58 (308)
.+|.+.++++.|+++||+..... .|. -...+-+.-++-|.++++++.... + ++++.
T Consensus 4 ~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (327)
T cd02803 4 IKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLT 83 (327)
T ss_pred cccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHH
Confidence 56888999999999999643221 111 224444444556888888764211 1 11122
Q ss_pred cc---CCCCceEEeeecC------------------------------CchH-------HHHHHHHHHHcCCcEEEEecC
Q 021739 59 ST---GPGIRFFQLYVTK------------------------------HRNV-------DAQLVKRAERAGFKAIALTVD 98 (308)
Q Consensus 59 ~~---~~~~~~~Ql~~~~------------------------------d~~~-------~~~~~~~~~~~g~~~i~i~~~ 98 (308)
.. .....++||+... +.+. +.+..++++++|+++|+|++.
T Consensus 84 ~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~ 163 (327)
T cd02803 84 EAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGA 163 (327)
T ss_pred HHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcch
Confidence 11 1124456664211 0122 224445667789999999987
Q ss_pred CCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhc--CCCEEEEecC--
Q 021739 99 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT--SLPILVKGVL-- 174 (308)
Q Consensus 99 ~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK~~~-- 174 (308)
+... ...|.-| ..+.|+ + +. | ++.. ....+..+.++++|+.+ ++||.+|+..
T Consensus 164 ~gyL-------~~qFlsp-~~n~R~-d--------~y-G---gs~e---nr~r~~~eii~avr~~~g~d~~i~vris~~~ 219 (327)
T cd02803 164 HGYL-------LSQFLSP-YTNKRT-D--------EY-G---GSLE---NRARFLLEIVAAVREAVGPDFPVGVRLSADD 219 (327)
T ss_pred hhhH-------HHHhcCc-cccCCC-c--------cc-C---CCHH---HHHHHHHHHHHHHHHHcCCCceEEEEechhc
Confidence 4321 1222222 111110 0 01 1 1111 23456689999999987 7899999873
Q ss_pred ------CHH----HHHHHHHcCCcEEEEecccccCCCC--------CcchHHHHHHHHHHccCCCeEEEecCCCCHHHHH
Q 021739 175 ------TAE----DASLAIQYGAAGIIVSNHGARQLDY--------VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVF 236 (308)
Q Consensus 175 ------~~e----~a~~~~~~G~d~i~v~~~gg~~~~~--------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~ 236 (308)
+.+ .++.+.++|+|+|.+++....+... ....+..+..+++.+ ++||+++|||++++++.
T Consensus 220 ~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~~~a~ 297 (327)
T cd02803 220 FVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVGGIRDPEVAE 297 (327)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHH
Confidence 333 3678899999999998754322111 122345566777666 79999999999999999
Q ss_pred HHHHc-CCCEEEEchHHHHh
Q 021739 237 KALAL-GASGVFVGRPVPFS 255 (308)
Q Consensus 237 k~l~~-GAd~V~ig~~~l~~ 255 (308)
++++. |||.|++||+++..
T Consensus 298 ~~l~~g~aD~V~igR~~lad 317 (327)
T cd02803 298 EILAEGKADLVALGRALLAD 317 (327)
T ss_pred HHHHCCCCCeeeecHHHHhC
Confidence 99998 69999999999863
No 73
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.48 E-value=4.6e-12 Score=119.12 Aligned_cols=225 Identities=15% Similarity=0.124 Sum_probs=136.4
Q ss_pred eeecCcccCCceEeccccCcccC--C-CHHHHHHHHHHHHcCCceeecCCCCC--------------C------HHHHhc
Q 021739 3 TTVLGFNISMPIMIAPTAFQKMA--H-PEGECATARAASAAGTIMTLSSWATS--------------S------VEEVSS 59 (308)
Q Consensus 3 t~~~g~~~~~Pi~iapm~~~~~~--~-~~~~~~~a~~a~~~g~~~~~s~~~~~--------------~------~e~i~~ 59 (308)
.+|.+.++++.|++|||+...-. . .+....+.+.-++-|.++++++.... + ++++..
T Consensus 5 ~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~ 84 (343)
T cd04734 5 LQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAE 84 (343)
T ss_pred eeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHH
Confidence 46888999999999999633110 1 11234555666667888888764211 1 111221
Q ss_pred ---cCCCCceEEeeecC----------------C------------------c---hHHHHHHHHHHHcCCcEEEEec--
Q 021739 60 ---TGPGIRFFQLYVTK----------------H------------------R---NVDAQLVKRAERAGFKAIALTV-- 97 (308)
Q Consensus 60 ---~~~~~~~~Ql~~~~----------------d------------------~---~~~~~~~~~~~~~g~~~i~i~~-- 97 (308)
......++||+... + . +.+.+.+++++++||++|+||.
T Consensus 85 ~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ah 164 (343)
T cd04734 85 AVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAH 164 (343)
T ss_pred HHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 11236788876321 0 0 1223445567789999999997
Q ss_pred CCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCC--CEEEEecC-
Q 021739 98 DTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSL--PILVKGVL- 174 (308)
Q Consensus 98 ~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~--Pv~vK~~~- 174 (308)
+|.. +.|.-| .++.|+ + .. | +++. ....+..++++.+|+.++. ||.+|+..
T Consensus 165 GyLl---------~qFlsp-~~N~Rt-D--------~y-G---Gsle---nR~r~~~eiv~~ir~~vg~~~~v~iRl~~~ 218 (343)
T cd04734 165 GHLI---------DQFLSP-LTNRRT-D--------EY-G---GSLE---NRMRFLLEVLAAVRAAVGPDFIVGIRISGD 218 (343)
T ss_pred chHH---------HHhhCC-CcCCCC-C--------cC-C---CCHH---HHhHHHHHHHHHHHHHcCCCCeEEEEeehh
Confidence 3211 122222 222110 0 01 1 1111 2456778999999999855 45555431
Q ss_pred -------CHH----HHHHHHHcC-CcEEEEecccccCC----------CCCc-chHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 175 -------TAE----DASLAIQYG-AAGIIVSNHGARQL----------DYVP-ATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 175 -------~~e----~a~~~~~~G-~d~i~v~~~gg~~~----------~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
+.+ .++.+.++| +|+|.|+...-... .... ..+.....+++.+ ++|||++|+|++
T Consensus 219 ~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~ 296 (343)
T cd04734 219 EDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRD 296 (343)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCC
Confidence 233 367888898 89999974321110 1111 1345567777766 799999999999
Q ss_pred HHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 232 GTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 232 ~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
++++.++++.| ||+|++||+++..
T Consensus 297 ~~~~~~~l~~~~~D~V~~gR~~lad 321 (343)
T cd04734 297 PAEAEQALAAGHADMVGMTRAHIAD 321 (343)
T ss_pred HHHHHHHHHcCCCCeeeecHHhHhC
Confidence 99999999976 9999999999864
No 74
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.44 E-value=1.1e-11 Score=116.31 Aligned_cols=227 Identities=19% Similarity=0.168 Sum_probs=141.1
Q ss_pred eeecCcccCCceEeccccCccc---CCCHHHHHHHHHHHHcCCceeecCCCCC--------------C------HHHHhc
Q 021739 3 TTVLGFNISMPIMIAPTAFQKM---AHPEGECATARAASAAGTIMTLSSWATS--------------S------VEEVSS 59 (308)
Q Consensus 3 t~~~g~~~~~Pi~iapm~~~~~---~~~~~~~~~a~~a~~~g~~~~~s~~~~~--------------~------~e~i~~ 59 (308)
.+|.+.++++.|+++||+...- ...+....+-+.-++-|+++++++.... + ++++..
T Consensus 5 ~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~ 84 (336)
T cd02932 5 LTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVD 84 (336)
T ss_pred eeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHH
Confidence 5788899999999999963211 1122335666666667899988764111 0 111221
Q ss_pred ---cCCCCceEEeeecC-------------------------------------------Cc-------hHHHHHHHHHH
Q 021739 60 ---TGPGIRFFQLYVTK-------------------------------------------HR-------NVDAQLVKRAE 86 (308)
Q Consensus 60 ---~~~~~~~~Ql~~~~-------------------------------------------d~-------~~~~~~~~~~~ 86 (308)
......++||+... +. +.+.+.+++++
T Consensus 85 ~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~ 164 (336)
T cd02932 85 FIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAV 164 (336)
T ss_pred HHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 11125677874311 00 12223445667
Q ss_pred HcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhc--
Q 021739 87 RAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT-- 164 (308)
Q Consensus 87 ~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~-- 164 (308)
++|++++.||++|-. +-+.|.-| ..+.+ -+ .. .+.+. .++.+..+.++.+|+.+
T Consensus 165 ~aGfDgVei~~~~gy-------Ll~qFlsp-~~N~R-~D--------~y----Ggsl~---nr~rf~~eiv~aIR~~vG~ 220 (336)
T cd02932 165 EAGFDVIEIHAAHGY-------LLHQFLSP-LSNKR-TD--------EY----GGSLE---NRMRFLLEVVDAVRAVWPE 220 (336)
T ss_pred HcCCCEEEEcccccc-------HHHHhcCC-ccCCC-Cc--------cc----CCCHH---HHhHHHHHHHHHHHHHcCC
Confidence 799999999987621 11122222 01100 00 00 11121 35667789999999998
Q ss_pred CCCEEEEec--------CCHH----HHHHHHHcCCcEEEEeccccc--CCCCC-c-chHHHHHHHHHHccCCCeEEEecC
Q 021739 165 SLPILVKGV--------LTAE----DASLAIQYGAAGIIVSNHGAR--QLDYV-P-ATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 165 ~~Pv~vK~~--------~~~e----~a~~~~~~G~d~i~v~~~gg~--~~~~~-~-~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
+.||.+|+. .+.+ .++.+.+.|+|+|.++.++.+ +.... + .......++++.+ ++||+++|+
T Consensus 221 d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~G~ 298 (336)
T cd02932 221 DKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA--GIPVIAVGL 298 (336)
T ss_pred CceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC--CCCEEEeCC
Confidence 789999965 2343 356778899999999754322 11111 1 1235556677666 799999999
Q ss_pred CCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 229 VRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 229 I~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
|.+++++.++++.| ||+|++||+++..
T Consensus 299 i~t~~~a~~~l~~g~aD~V~~gR~~i~d 326 (336)
T cd02932 299 ITDPEQAEAILESGRADLVALGRELLRN 326 (336)
T ss_pred CCCHHHHHHHHHcCCCCeehhhHHHHhC
Confidence 99999999999988 9999999999864
No 75
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.40 E-value=2.2e-11 Score=114.43 Aligned_cols=150 Identities=18% Similarity=0.249 Sum_probs=99.9
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHH
Q 021739 80 QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKW 159 (308)
Q Consensus 80 ~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 159 (308)
+..++++++|+|+|.||..|= + +-+.|--| ..+.|+ + +. .+++. ....+..+.|++
T Consensus 153 ~aA~ra~~aGfDgVeih~a~g---y----Ll~qFlsp-~~N~R~-D--------~y----GGsle---nR~rf~~EiI~a 208 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHG---Y----LLSQFLSP-LTNKRT-D--------EY----GGSLE---NRARLLLEIYDA 208 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhh---h----HHHHhcCC-cCCCCC-c--------cC----CCCHH---HHHHHHHHHHHH
Confidence 455677789999999998761 1 11122222 111110 0 11 11211 256677899999
Q ss_pred HHHhc--CCCEEEEec--------CCHH----HHHHHHHcCCcEEEEecccccCCCC----C------cc-hHHHHHHHH
Q 021739 160 LQTIT--SLPILVKGV--------LTAE----DASLAIQYGAAGIIVSNHGARQLDY----V------PA-TVMALEEVV 214 (308)
Q Consensus 160 ir~~~--~~Pv~vK~~--------~~~e----~a~~~~~~G~d~i~v~~~gg~~~~~----~------~~-~~~~l~~i~ 214 (308)
||+.+ +.||.+|.. .+.+ .++.+.++|+|+|.|+.+...+... . .. .+....+++
T Consensus 209 IR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik 288 (338)
T cd04733 209 IRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR 288 (338)
T ss_pred HHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHH
Confidence 99988 589999985 3444 3678889999999987643211110 0 00 134445677
Q ss_pred HHccCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 215 QAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 215 ~~~~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
+.+ ++||+++|+|.+++++.++++.| ||.|++||+++..
T Consensus 289 ~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iad 328 (338)
T cd04733 289 KVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALE 328 (338)
T ss_pred HHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhC
Confidence 666 79999999999999999999987 9999999999863
No 76
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.40 E-value=4.4e-11 Score=112.19 Aligned_cols=148 Identities=18% Similarity=0.100 Sum_probs=98.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHH
Q 021739 80 QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKW 159 (308)
Q Consensus 80 ~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 159 (308)
+..++++++|+++|.|+..| |+ +-+.|.-| ..+.| -+ +. .+++- ....+..+++++
T Consensus 156 ~aA~~a~~aGfDgVeih~ah---Gy----Ll~qFlSp-~~N~R-~D--------~y----GGsle---nR~rf~~eii~a 211 (338)
T cd02933 156 QAARNAIEAGFDGVEIHGAN---GY----LIDQFLRD-GSNKR-TD--------EY----GGSIE---NRARFLLEVVDA 211 (338)
T ss_pred HHHHHHHHcCCCEEEEcccc---ch----hHHHhcCC-ccCCC-CC--------cC----CCcHH---HhhhHHHHHHHH
Confidence 44556778999999999877 11 11122222 11111 00 11 11111 234567899999
Q ss_pred HHHhcCC-CEEEEecC-----------CH----HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeE
Q 021739 160 LQTITSL-PILVKGVL-----------TA----EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 223 (308)
Q Consensus 160 ir~~~~~-Pv~vK~~~-----------~~----e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (308)
||+.++. ||.+|+.. +. +.++.+.+.|+|+|.|+... .........+....++++.+ ++||
T Consensus 212 ir~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~-~~~~~~~~~~~~~~~ik~~~--~ipv 288 (338)
T cd02933 212 VAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR-VAGNPEDQPPDFLDFLRKAF--KGPL 288 (338)
T ss_pred HHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCcccccchHHHHHHHHHc--CCCE
Confidence 9998744 89999852 33 34678889999999996432 11111223456667777776 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 224 FLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 224 ia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
|++|||+ ++++.++++.| ||+|++||+++..
T Consensus 289 i~~G~i~-~~~a~~~l~~g~~D~V~~gR~~lad 320 (338)
T cd02933 289 IAAGGYD-AESAEAALADGKADLVAFGRPFIAN 320 (338)
T ss_pred EEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhC
Confidence 9999997 99999999976 9999999999863
No 77
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.40 E-value=1.5e-11 Score=116.21 Aligned_cols=107 Identities=19% Similarity=0.145 Sum_probs=77.6
Q ss_pred ccccCHHHHHHHHHhcC------CCEEEEecC--------CHH----HHHHHHHcCCcEEEEecccccCC--CCCcchHH
Q 021739 149 DRSLNWKDVKWLQTITS------LPILVKGVL--------TAE----DASLAIQYGAAGIIVSNHGARQL--DYVPATVM 208 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~------~Pv~vK~~~--------~~e----~a~~~~~~G~d~i~v~~~gg~~~--~~~~~~~~ 208 (308)
...+..|+++.+|+.++ .||.+|+.. +.+ .++.+.++|+|+|.++.+..+.. ........
T Consensus 193 R~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~ 272 (353)
T cd04735 193 RMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQT 272 (353)
T ss_pred HHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHH
Confidence 45667899999999864 566666542 233 36788899999999986432211 11111234
Q ss_pred HHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 209 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 209 ~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
.+..+++.+..++|||++|||++++++.++++.|||+|++||+++..
T Consensus 273 ~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liad 319 (353)
T cd04735 273 IMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVD 319 (353)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhC
Confidence 44555555544799999999999999999999999999999999864
No 78
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.38 E-value=2.8e-11 Score=115.39 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=78.8
Q ss_pred ccccCHHHHHHHHHhc--CCCEEEEecC----------------------CHH----HHHHHHHcCCcEEEEecccccCC
Q 021739 149 DRSLNWKDVKWLQTIT--SLPILVKGVL----------------------TAE----DASLAIQYGAAGIIVSNHGARQL 200 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~--~~Pv~vK~~~----------------------~~e----~a~~~~~~G~d~i~v~~~gg~~~ 200 (308)
...+..++|++||+.+ +.||.+|+.. +.+ .++.+.++|+|+|.++.....+.
T Consensus 200 R~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~ 279 (382)
T cd02931 200 RLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW 279 (382)
T ss_pred HhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence 4567789999999988 5799999863 223 36788889999999976432111
Q ss_pred C-C------Ccch-HHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 201 D-Y------VPAT-VMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 201 ~-~------~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
. . .... +.....+++.+ ++||+++|||++++++.++++.| ||+|++||+++..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad 341 (382)
T cd02931 280 YWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLAD 341 (382)
T ss_pred ccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhC
Confidence 1 0 1111 23456666666 79999999999999999999977 9999999999864
No 79
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.38 E-value=4.1e-11 Score=113.10 Aligned_cols=226 Identities=18% Similarity=0.163 Sum_probs=136.4
Q ss_pred eeecCcccCCceEeccccCcccC---CCHHHHHHHHHHHHcCCceeecCCCCC---------------CH------HHHh
Q 021739 3 TTVLGFNISMPIMIAPTAFQKMA---HPEGECATARAASAAGTIMTLSSWATS---------------SV------EEVS 58 (308)
Q Consensus 3 t~~~g~~~~~Pi~iapm~~~~~~---~~~~~~~~a~~a~~~g~~~~~s~~~~~---------------~~------e~i~ 58 (308)
.+|.+.++++.|+++||+..... ..+....+-+.-++-|+++++++.... +. +++.
T Consensus 5 l~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~ 84 (361)
T cd04747 5 FTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVV 84 (361)
T ss_pred eeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHH
Confidence 47888999999999999633110 122345566666667888887753111 11 1111
Q ss_pred cc---CCCCceEEeeecCC----------------------------c-----------hHHHHHHHHHHHcCCcEEEEe
Q 021739 59 ST---GPGIRFFQLYVTKH----------------------------R-----------NVDAQLVKRAERAGFKAIALT 96 (308)
Q Consensus 59 ~~---~~~~~~~Ql~~~~d----------------------------~-----------~~~~~~~~~~~~~g~~~i~i~ 96 (308)
.. .....++||..... + +.+.+..++++++||++|.|+
T Consensus 85 d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih 164 (361)
T cd04747 85 DEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELH 164 (361)
T ss_pred HHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 11 11256788753110 0 123345567778999999999
Q ss_pred cCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhc--CCCEEEEecC
Q 021739 97 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT--SLPILVKGVL 174 (308)
Q Consensus 97 ~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK~~~ 174 (308)
..| |+ +-+.|--| ..+.|+ + +. | +++- ....+..|+|+.||+.+ +.||.+|+..
T Consensus 165 ~ah---Gy----Ll~qFLSp-~~N~Rt-D--------eY-G---Gsle---nR~Rf~~eii~air~~vG~d~~v~vRis~ 220 (361)
T cd04747 165 GAH---GY----LIDQFFWA-GTNRRA-D--------GY-G---GSLA---ARSRFAAEVVKAIRAAVGPDFPIILRFSQ 220 (361)
T ss_pred ccc---ch----HHHHhcCC-CCCCCC-C--------CC-C---CCHH---HHHHHHHHHHHHHHHHcCCCCeEEEEECc
Confidence 876 11 11122222 111110 0 01 1 1111 23556789999999987 5899999862
Q ss_pred ------------CHHH----HHHHHHcCCcEEEEecccc-cCCCCCcchHHHHHHHHHHccCCCeEEEecCC--------
Q 021739 175 ------------TAED----ASLAIQYGAAGIIVSNHGA-RQLDYVPATVMALEEVVQAAKGRVPVFLDGGV-------- 229 (308)
Q Consensus 175 ------------~~e~----a~~~~~~G~d~i~v~~~gg-~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI-------- 229 (308)
++++ ++.+.++|+|+|.++...- .+...+ ..+....++++.+ ++||+++|+|
T Consensus 221 ~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~~~k~~~--~~pv~~~G~i~~~~~~~~ 297 (361)
T cd04747 221 WKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAGWTKKLT--GLPTITVGSVGLDGDFIG 297 (361)
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHHHHHHHc--CCCEEEECCccccccccc
Confidence 2233 4567889999999875321 111111 1233445566655 7999999999
Q ss_pred ----------CCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 230 ----------RRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 230 ----------~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
++++++.++++.| ||+|++||+++..
T Consensus 298 ~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iad 334 (361)
T cd04747 298 AFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSD 334 (361)
T ss_pred ccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhC
Confidence 5999999999976 9999999999864
No 80
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.38 E-value=5.9e-11 Score=101.37 Aligned_cols=185 Identities=23% Similarity=0.219 Sum_probs=120.3
Q ss_pred eEeccccCcccCCCHHHHHHHHHHHHcCCceeecCC-CCC-----C-----HHHHhccCCCCceEEeeecCCchHHHHHH
Q 021739 14 IMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW-ATS-----S-----VEEVSSTGPGIRFFQLYVTKHRNVDAQLV 82 (308)
Q Consensus 14 i~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~-~~~-----~-----~e~i~~~~~~~~~~Ql~~~~d~~~~~~~~ 82 (308)
|++++|+++. .+.....++.+.+.|+.+..... ... . ++.+......+.++|++.....+......
T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGP---SGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCc---hHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 5678887752 13346788889999877655433 111 1 22333333347889998333333333335
Q ss_pred HHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHH
Q 021739 83 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 162 (308)
Q Consensus 83 ~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 162 (308)
+.+.++|++++.++..++.. +....+.++++++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-----------------------------------------------~~~~~~~~~~i~~ 110 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-----------------------------------------------AREDLELIRELRE 110 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-----------------------------------------------HHHHHHHHHHHHH
Confidence 67888999999998765421 1223467888888
Q ss_pred hc-CCCEEEEecCCHHHHHH-HHHcCCcEEEEecccccCCCCCcch--HHHHHHHHHHccCCCeEEEecCCCCHHHHHHH
Q 021739 163 IT-SLPILVKGVLTAEDASL-AIQYGAAGIIVSNHGARQLDYVPAT--VMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA 238 (308)
Q Consensus 163 ~~-~~Pv~vK~~~~~e~a~~-~~~~G~d~i~v~~~gg~~~~~~~~~--~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~ 238 (308)
.+ +.|+++|.....+.... +.+.|+|+|.++++........... ...+..+.+. .++||+++|||.+++++.++
T Consensus 111 ~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~GGi~~~~~~~~~ 188 (200)
T cd04722 111 AVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAGGGINDPEDAAEA 188 (200)
T ss_pred hcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEECCCCCHHHHHHH
Confidence 87 89999998744332222 6889999999987654332222111 1223333332 37999999999999999999
Q ss_pred HHcCCCEEEEch
Q 021739 239 LALGASGVFVGR 250 (308)
Q Consensus 239 l~~GAd~V~ig~ 250 (308)
+..|||+|++||
T Consensus 189 ~~~Gad~v~vgs 200 (200)
T cd04722 189 LALGADGVIVGS 200 (200)
T ss_pred HHhCCCEEEecC
Confidence 999999999997
No 81
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.36 E-value=1.1e-10 Score=111.23 Aligned_cols=216 Identities=19% Similarity=0.215 Sum_probs=128.4
Q ss_pred cCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHh-------cc-C-CCCceEEeeec-CCchHHH
Q 021739 10 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS-------ST-G-PGIRFFQLYVT-KHRNVDA 79 (308)
Q Consensus 10 ~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~-------~~-~-~~~~~~Ql~~~-~d~~~~~ 79 (308)
++.|++.+||+++ .+.+ .|+.+..+.|....++... .+++++. +. . ..|..++|+.. .+++...
T Consensus 12 iryPii~gpMa~G-iss~----eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~ 85 (418)
T cd04742 12 LRYAYVAGAMARG-IASA----ELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEE 85 (418)
T ss_pred CCccEECCcccCC-CCCH----HHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHH
Confidence 5789999999832 2544 8999999999888787543 3444433 22 2 34788888753 3455556
Q ss_pred HHHHHHHHcCCcEEEEe--cC-CCCCCcchHH--hhhccCCCCccccccccccccccCCC-CCCchhhhHhhhhcccccC
Q 021739 80 QLVKRAERAGFKAIALT--VD-TPRLGRREAD--IKNRFVLPPHLTLKNYEGLYIGKMDK-TDDSGLASYVANQIDRSLN 153 (308)
Q Consensus 80 ~~~~~~~~~g~~~i~i~--~~-~p~~~~r~~~--~~~~~~~p~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 153 (308)
+.++.+.+.|++.+..+ ++ .|.. .+++. ++ +.....+...+. . +.+ .....+...+. ...
T Consensus 86 ~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~~G~~--~~~~g~~~~~~~-V-----iakVsr~evAs~~f~-----ppp 151 (418)
T cd04742 86 GLVDLFLRHGVRVVEASAFMQLTPAL-VRYRAKGLR--RDADGRVQIANR-I-----IAKVSRPEVAEAFMS-----PAP 151 (418)
T ss_pred HHHHHHHHcCCCEEEeccccCCCcch-hhHHhcCCc--ccccccccccce-E-----EEecCChhhhhhhcC-----CCC
Confidence 67788888999887655 22 1211 11111 10 000000000000 0 000 00001111111 123
Q ss_pred HHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcC-CcEEEEecc-cccCCCCCcchHHHHHHHHH---Hc------cCCCe
Q 021739 154 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYG-AAGIIVSNH-GARQLDYVPATVMALEEVVQ---AA------KGRVP 222 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G-~d~i~v~~~-gg~~~~~~~~~~~~l~~i~~---~~------~~~ip 222 (308)
-+.++++++. +..|.++|+.+.+.| +|.|++... ||+. + ..++...+..+.+ .+ ..++|
T Consensus 152 ~~~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~-g-~~~~~~Llp~v~~l~d~v~~~~~~~~~ip 221 (418)
T cd04742 152 ERILKKLLAE--------GKITEEQAELARRVPVADDITVEADSGGHT-D-NRPLSVLLPTIIRLRDELAARYGYRRPIR 221 (418)
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC-C-CccHHhHHHHHHHHHHHHhhccccCCCce
Confidence 4677887764 234999999999999 599998632 3432 1 2234444444432 22 12599
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
|++.|||.|++++..++++||++|++|+.|+..
T Consensus 222 ViAAGGI~tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 222 VGAAGGIGTPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred EEEECCCCCHHHHHHHHHcCCcEEeeccHHHhC
Confidence 999999999999999999999999999999864
No 82
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.35 E-value=4.1e-11 Score=111.98 Aligned_cols=98 Identities=31% Similarity=0.432 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecc--cccCC--CCCcchHHHHHHHHHHccCC-CeEEEecCC
Q 021739 155 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQL--DYVPATVMALEEVVQAAKGR-VPVFLDGGV 229 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-ipvia~GGI 229 (308)
+.++.++. .+..++.+ +.+...++++.+.|+|.|+..+. ||+.. +..+.+...+.++++.+ + +|||+.|||
T Consensus 118 ~~i~~~~~-~g~~v~~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI 193 (336)
T COG2070 118 EFVARLKA-AGIKVIHS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGI 193 (336)
T ss_pred HHHHHHHH-cCCeEEEE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCc
Confidence 56677766 56666654 46889999999999999998763 34322 23456677889999887 5 999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHHhc
Q 021739 230 RRGTDVFKALALGASGVFVGRPVPFSL 256 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig~~~l~~~ 256 (308)
.++.++..++++||++|+||+.|+...
T Consensus 194 ~dg~~i~AAlalGA~gVq~GT~Fl~t~ 220 (336)
T COG2070 194 ADGRGIAAALALGADGVQMGTRFLATK 220 (336)
T ss_pred cChHHHHHHHHhccHHHHhhhhhhccc
Confidence 999999999999999999999998653
No 83
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.34 E-value=1.6e-10 Score=106.67 Aligned_cols=181 Identities=16% Similarity=0.186 Sum_probs=120.1
Q ss_pred CCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHh-------cc-CCCCceEEeeecCCchHHHHHH
Q 021739 11 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS-------ST-GPGIRFFQLYVTKHRNVDAQLV 82 (308)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~-------~~-~~~~~~~Ql~~~~d~~~~~~~~ 82 (308)
+.||+-+||++. ++ ...|+.+..+.|...+++.. ..+.+++. +. ...|+.+++....+.....+.+
T Consensus 2 ~yPIiqgpM~~v--s~---~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRV--SD---VAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCC--CC---cHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 579999999876 53 13889999999877666532 23333322 21 2346666664222223345566
Q ss_pred HHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHH
Q 021739 83 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 162 (308)
Q Consensus 83 ~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 162 (308)
+.+.+.+++.+.++.+.| . .++++++
T Consensus 76 ~vi~e~~v~~V~~~~G~P--------------------------------------------------~----~~~~lk~ 101 (320)
T cd04743 76 AVVRAIKPTFALIAGGRP--------------------------------------------------D----QARALEA 101 (320)
T ss_pred HHHHhcCCcEEEEcCCCh--------------------------------------------------H----HHHHHHH
Confidence 666677877765543211 1 1355554
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEecc--cccCCCCCcchHHHHHHHHHHcc--------CCCeEEEecCCCCH
Q 021739 163 ITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAK--------GRVPVFLDGGVRRG 232 (308)
Q Consensus 163 ~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~ipvia~GGI~~~ 232 (308)
.++.++. .+.+++.++++.++|+|+|++.++ ||+. +..+++..+.++.+.+. .++|||+.|||.++
T Consensus 102 -~Gi~v~~-~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dg 177 (320)
T cd04743 102 -IGISTYL-HVPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDE 177 (320)
T ss_pred -CCCEEEE-EeCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCH
Confidence 4666664 347889999999999999999874 4442 12234444455444331 26999999999999
Q ss_pred HHHHHHHHcCC--------CEEEEchHHHHh
Q 021739 233 TDVFKALALGA--------SGVFVGRPVPFS 255 (308)
Q Consensus 233 ~d~~k~l~~GA--------d~V~ig~~~l~~ 255 (308)
..+..++++|| ++|+||+.|+..
T Consensus 178 r~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t 208 (320)
T cd04743 178 RSAAMVSALAAPLAERGAKVGVLMGTAYLFT 208 (320)
T ss_pred HHHHHHHHcCCcccccccccEEEEccHHhcc
Confidence 99999999998 899999999874
No 84
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.31 E-value=2.4e-10 Score=118.14 Aligned_cols=104 Identities=18% Similarity=0.107 Sum_probs=76.8
Q ss_pred cccCHHHHHHHHHhc--CCCEEEEecC--------CH----HHHHHHHHcCCcEEEEeccccc-CC--CCCcc-hHHHHH
Q 021739 150 RSLNWKDVKWLQTIT--SLPILVKGVL--------TA----EDASLAIQYGAAGIIVSNHGAR-QL--DYVPA-TVMALE 211 (308)
Q Consensus 150 ~~~~~~~i~~ir~~~--~~Pv~vK~~~--------~~----e~a~~~~~~G~d~i~v~~~gg~-~~--~~~~~-~~~~l~ 211 (308)
..+..|+++.||+.+ ++||.+|+.. +. +.++.+.++|+|+|.|+..... .. ..++. ......
T Consensus 601 ~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~ 680 (765)
T PRK08255 601 LRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFAD 680 (765)
T ss_pred hHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHH
Confidence 456679999999986 5899999873 23 3467888999999999743211 10 01111 123335
Q ss_pred HHHHHccCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 212 EVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 212 ~i~~~~~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
++++.+ ++||+++|+|++++++.++++.| ||+|++||+++..
T Consensus 681 ~ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~d 723 (765)
T PRK08255 681 RIRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLAD 723 (765)
T ss_pred HHHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhC
Confidence 566665 79999999999999999999976 9999999999964
No 85
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.27 E-value=2e-10 Score=108.51 Aligned_cols=227 Identities=15% Similarity=0.086 Sum_probs=135.4
Q ss_pred eeecCcccCCceEeccccC-ccc-CC-CHHHHHHHHHHHHcCCceeecCCCCC--------------C------HHHHhc
Q 021739 3 TTVLGFNISMPIMIAPTAF-QKM-AH-PEGECATARAASAAGTIMTLSSWATS--------------S------VEEVSS 59 (308)
Q Consensus 3 t~~~g~~~~~Pi~iapm~~-~~~-~~-~~~~~~~a~~a~~~g~~~~~s~~~~~--------------~------~e~i~~ 59 (308)
.+|.+.++++.|+++||+. ... .. .+....+-+.-++-|.++++++.... + ++++..
T Consensus 5 ~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~ 84 (353)
T cd02930 5 LDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITD 84 (353)
T ss_pred eeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHH
Confidence 4788999999999999962 110 11 23345566666667888887764110 0 112221
Q ss_pred c---CCCCceEEeeecC--------------------------Cc-------hHHHHHHHHHHHcCCcEEEEecCCCCCC
Q 021739 60 T---GPGIRFFQLYVTK--------------------------HR-------NVDAQLVKRAERAGFKAIALTVDTPRLG 103 (308)
Q Consensus 60 ~---~~~~~~~Ql~~~~--------------------------d~-------~~~~~~~~~~~~~g~~~i~i~~~~p~~~ 103 (308)
. .....++||.... +. +.+.+.+++++++|||++.|+.. +|
T Consensus 85 ~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~a---hG 161 (353)
T cd02930 85 AVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGS---EG 161 (353)
T ss_pred HHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc---cc
Confidence 1 1225688884311 01 22334455667799999999753 12
Q ss_pred cchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhc--CCCEEEEec--------
Q 021739 104 RREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT--SLPILVKGV-------- 173 (308)
Q Consensus 104 ~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK~~-------- 173 (308)
+ +-+.|.-| ..+.|+ + +. .+++. ....+..+.++.+|+.+ ++||.+|+.
T Consensus 162 y----Ll~qFlsp-~~N~Rt-D--------~y----GGsle---nR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g 220 (353)
T cd02930 162 Y----LINQFLAP-RTNKRT-D--------EW----GGSFE---NRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGG 220 (353)
T ss_pred h----HHHHhcCC-ccCCCc-C--------cc----CCCHH---HHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCC
Confidence 1 11122222 111100 0 11 11111 24566789999999987 456777764
Q ss_pred CCHH----HHHHHHHcCCcEEEEeccc--ccC-C---CCCcc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcC
Q 021739 174 LTAE----DASLAIQYGAAGIIVSNHG--ARQ-L---DYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG 242 (308)
Q Consensus 174 ~~~e----~a~~~~~~G~d~i~v~~~g--g~~-~---~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~G 242 (308)
.+.+ .++.+.++|+|+|.++... .+. . ..... ......++++.+ ++||+++|++++++++.++++.|
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g 298 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLADG 298 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCC
Confidence 2333 3678889999999997421 111 0 01111 123345666665 79999999999999999999977
Q ss_pred -CCEEEEchHHHHh
Q 021739 243 -ASGVFVGRPVPFS 255 (308)
Q Consensus 243 -Ad~V~ig~~~l~~ 255 (308)
+|+|++||+++..
T Consensus 299 ~~D~V~~gR~~l~d 312 (353)
T cd02930 299 DADMVSMARPFLAD 312 (353)
T ss_pred CCChhHhhHHHHHC
Confidence 9999999999864
No 86
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.26 E-value=5.3e-10 Score=106.25 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHH
Q 021739 80 QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKW 159 (308)
Q Consensus 80 ~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 159 (308)
+..++++++|||+|+|+..|-.. -+.|.-| ..+.| -+ +. | +++ +....+..|+++.
T Consensus 154 ~AA~ra~~aGfDgVEih~ahGyL-------l~QFlSp-~~N~R-tD--------~y-G---Gsl---enR~Rf~~eii~a 209 (370)
T cd02929 154 DAALRARDAGFDIVYVYAAHGYL-------PLQFLLP-RYNKR-TD--------EY-G---GSL---ENRARFWRETLED 209 (370)
T ss_pred HHHHHHHHcCCCEEEEcccccch-------HHHhhCc-cccCC-cc--------cc-C---CCh---HhhhHHHHHHHHH
Confidence 44556778999999999877211 1122222 11110 00 01 1 111 1245667899999
Q ss_pred HHHhcC--CCEEEEecC----------CHHH----HHHHHHcCCcEEEEeccccc----CCCCCc--chHHHHHHHHHHc
Q 021739 160 LQTITS--LPILVKGVL----------TAED----ASLAIQYGAAGIIVSNHGAR----QLDYVP--ATVMALEEVVQAA 217 (308)
Q Consensus 160 ir~~~~--~Pv~vK~~~----------~~e~----a~~~~~~G~d~i~v~~~gg~----~~~~~~--~~~~~l~~i~~~~ 217 (308)
||+.++ +||.+|+.. +.++ ++.+.+ .+|++.++...-. .....+ ..+....++++.+
T Consensus 210 Ir~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~ 288 (370)
T cd02929 210 TKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT 288 (370)
T ss_pred HHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccccHHHHHHHHHHC
Confidence 999884 567777641 2333 344544 4899998753210 000001 1234456666665
Q ss_pred cCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 218 KGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 218 ~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
++|||++|+|++++++.++++.| ||+|++||+++..
T Consensus 289 --~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad 325 (370)
T cd02929 289 --SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIAD 325 (370)
T ss_pred --CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhC
Confidence 79999999999999999999987 9999999999863
No 87
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.26 E-value=9.5e-10 Score=99.29 Aligned_cols=152 Identities=20% Similarity=0.268 Sum_probs=105.0
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhH----hhhh
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASY----VANQ 147 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 147 (308)
+.|.+.+.++++.+.+.|++.|.+.+ | |+.|. +| |+..|.+ +...
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElGi--P------------fsDP~---------aD--------GpvIq~a~~~al~~G 68 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELGV--P------------FSDPL---------AD--------GPTIQAADLRALRAG 68 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--C------------CCCCC---------Cc--------CHHHHHHHHHHHHcC
Confidence 35778889999999999999998875 5 33442 11 2333332 2222
Q ss_pred cccccCHHHHHHHHHh-cCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------ccc-------
Q 021739 148 IDRSLNWKDVKWLQTI-TSLPILVKGVLTA-------EDASLAIQYGAAGIIVSN---------------HGA------- 197 (308)
Q Consensus 148 ~d~~~~~~~i~~ir~~-~~~Pv~vK~~~~~-------e~a~~~~~~G~d~i~v~~---------------~gg------- 197 (308)
...+..++.++++|+. .++|++.-...++ +.++.+.++|+|++.+.. +|-
T Consensus 69 ~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 69 MTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEEC
Confidence 2333457889999976 7899876665554 458899999999998853 010
Q ss_pred --cC-------------------CC--CC------cchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021739 198 --RQ-------------------LD--YV------PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 198 --~~-------------------~~--~~------~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 248 (308)
+. .. .| +...+.+.++++.. +.||++.|||+|++++.+++..|||+|.+
T Consensus 149 P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 149 PNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIV 226 (256)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 00 00 11 12344556666544 67999999999999999999999999999
Q ss_pred chHHHHhc
Q 021739 249 GRPVPFSL 256 (308)
Q Consensus 249 g~~~l~~~ 256 (308)
||.++..+
T Consensus 227 GSaiv~~~ 234 (256)
T TIGR00262 227 GSAIVKII 234 (256)
T ss_pred CHHHHHHH
Confidence 99998765
No 88
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.26 E-value=1.2e-09 Score=98.87 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=104.3
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhh----
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQ---- 147 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 147 (308)
+.|.+.+.++++.+.+.|++.|.+.+ | |+.|. +| |+..|.+....
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElGi--P------------fSDP~---------aD--------GpvIq~a~~rAL~~g 73 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELGI--P------------YSDPL---------AD--------GPIIQEASNRALKQG 73 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--C------------CCCCC---------cc--------CHHHHHHHHHHHHcC
Confidence 45778899999999999999998875 5 34442 11 23333333222
Q ss_pred cccccCHHHHHHHHHhcCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------ccc--------
Q 021739 148 IDRSLNWKDVKWLQTITSLPILVKGVLTA-------EDASLAIQYGAAGIIVSN---------------HGA-------- 197 (308)
Q Consensus 148 ~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~-------e~a~~~~~~G~d~i~v~~---------------~gg-------- 197 (308)
...+..++.++++|+..++|+++-...++ ...+.+.++|+|++.+.. +|-
T Consensus 74 ~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 74 INLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 23334588899999878899877665442 357899999999999853 000
Q ss_pred -cC-------------------C--CCCc-----c-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 198 -RQ-------------------L--DYVP-----A-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 198 -~~-------------------~--~~~~-----~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+. . -.|. . ..+.+.++++.. +.||...+||++++++.++...|||+|.+|
T Consensus 154 tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 154 TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 00 0 0111 1 122344444433 799999999999999999999999999999
Q ss_pred hHHHHhcc
Q 021739 250 RPVPFSLA 257 (308)
Q Consensus 250 ~~~l~~~~ 257 (308)
|+++..+.
T Consensus 232 Salv~~i~ 239 (263)
T CHL00200 232 SACVQILL 239 (263)
T ss_pred HHHHHHHH
Confidence 99987543
No 89
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.26 E-value=1.7e-09 Score=103.80 Aligned_cols=217 Identities=19% Similarity=0.204 Sum_probs=127.8
Q ss_pred cCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHh-------ccCCC-C-ceEEeeecC-CchHHH
Q 021739 10 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS-------STGPG-I-RFFQLYVTK-HRNVDA 79 (308)
Q Consensus 10 ~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~-------~~~~~-~-~~~Ql~~~~-d~~~~~ 79 (308)
++.|++.+||+++ .+.+ .|+.+..+.|....++... .+++++. +..++ + ..++|+... +++.-.
T Consensus 17 iryPiiqgpMa~G-iSs~----eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~ 90 (444)
T TIGR02814 17 VRYAYVAGAMANG-IASA----ELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEW 90 (444)
T ss_pred CCCcEECccccCC-CCCH----HHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHH
Confidence 5789999999842 2544 8999999999888787543 3454433 22222 5 788887543 444445
Q ss_pred HHHHHHHHcCCcEEEEe--cC-CCCCCcchHH--hhhccCCCCccccccccccccccCCCCCCc-hhhhHhhhhcccccC
Q 021739 80 QLVKRAERAGFKAIALT--VD-TPRLGRREAD--IKNRFVLPPHLTLKNYEGLYIGKMDKTDDS-GLASYVANQIDRSLN 153 (308)
Q Consensus 80 ~~~~~~~~~g~~~i~i~--~~-~p~~~~r~~~--~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~ 153 (308)
+.++.+.+.|++.+... ++ +|.. .+++. ++ +.....+..++. -+.+-... .+...+. ...
T Consensus 91 ~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~~G~~--~~~~g~~~~~~~------ViakVsr~~vAs~f~~-----p~p 156 (444)
T TIGR02814 91 GLVDLLLRHGVRIVEASAFMQLTPAL-VRYRAKGLH--RDADGRVVIRNR------LIAKVSRPEVAEAFMS-----PAP 156 (444)
T ss_pred HHHHHHHHcCCCEEEeccccCCCcch-hhhhhcccc--ccccccccccce------EEEecCCHHHHHHhcC-----CCc
Confidence 56677778899887665 22 2221 11111 10 000000000000 00000000 1111111 112
Q ss_pred HHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCC-cEEEEec-ccccCCCCCcchHHHHHHHH---HHc------cCCCe
Q 021739 154 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA-AGIIVSN-HGARQLDYVPATVMALEEVV---QAA------KGRVP 222 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~-d~i~v~~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~ip 222 (308)
-+.++++.+. +..|++++..+.+.|+ |.|++.. .||+. +..++...++.+. +.+ ..++|
T Consensus 157 ~~~v~~L~~~--------G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~Vp 226 (444)
T TIGR02814 157 AHILQKLLAE--------GRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIR 226 (444)
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCce
Confidence 3567777653 2349999999999995 9888753 23432 1224555555553 233 12689
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhc
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 256 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~ 256 (308)
|++.|||.|++++..++++|||+|++|+.|+...
T Consensus 227 ViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 227 VGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred EEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 9999999999999999999999999999998753
No 90
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.22 E-value=2.4e-09 Score=94.64 Aligned_cols=97 Identities=24% Similarity=0.261 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCC--CCCcchHHHHHHHHHHccCCCeEEEecCCCCH
Q 021739 155 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 232 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (308)
+.++.+++..++|+++ .+.+.++++.+.+.|+|++.+++++.+.. .........+.++++.+ ++||++.|||+++
T Consensus 109 ~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~ 185 (221)
T PRK01130 109 ELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTP 185 (221)
T ss_pred HHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCH
Confidence 5567776645677764 45788999999999999998754432211 12334567788887766 7999999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 021739 233 TDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 233 ~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+|+.+++++|||+|++|+.++.
T Consensus 186 ~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 186 EQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HHHHHHHHCCCCEEEEchHhcC
Confidence 9999999999999999999764
No 91
>PLN02591 tryptophan synthase
Probab=99.22 E-value=2.4e-09 Score=96.07 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=104.0
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhh----Hhhhh
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS----YVANQ 147 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 147 (308)
+.|.+.+.++++.+.+.|++.|.+.+ | |+.|. +| |+..|. ++...
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElGi--P------------fSDP~---------aD--------GpvIq~a~~rAL~~G 60 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELGV--P------------YSDPL---------AD--------GPVIQAAATRALEKG 60 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--C------------CCCCc---------cc--------CHHHHHHHHHHHHcC
Confidence 45778899999999999999998875 5 33442 11 233333 22222
Q ss_pred cccccCHHHHHHHHHhcCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------ccc--------
Q 021739 148 IDRSLNWKDVKWLQTITSLPILVKGVLTA-------EDASLAIQYGAAGIIVSN---------------HGA-------- 197 (308)
Q Consensus 148 ~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~-------e~a~~~~~~G~d~i~v~~---------------~gg-------- 197 (308)
.+.+..++.++++|+..++|+++-...++ ...+.+.++|+|++.+-. +|-
T Consensus 61 ~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~P 140 (250)
T PLN02591 61 TTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTP 140 (250)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 23334578899999878899877665442 357888999999998732 000
Q ss_pred -cC----------------------CCC---C-cchH-HHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 198 -RQ----------------------LDY---V-PATV-MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 198 -~~----------------------~~~---~-~~~~-~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+. ..+ . +... +.+.++++. .++||+...||++++|+.+++..|||+|.+|
T Consensus 141 tt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 141 TTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV--TDKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred CCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc--CCCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 00 001 1 1222 335666554 3799999999999999999999999999999
Q ss_pred hHHHHhc
Q 021739 250 RPVPFSL 256 (308)
Q Consensus 250 ~~~l~~~ 256 (308)
|.++..+
T Consensus 219 SalVk~i 225 (250)
T PLN02591 219 SAMVKAL 225 (250)
T ss_pred HHHHHhh
Confidence 9998764
No 92
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.21 E-value=2.1e-09 Score=101.36 Aligned_cols=103 Identities=26% Similarity=0.278 Sum_probs=75.1
Q ss_pred ccCHHHHHHHHHhcC--CCEEEEecC---------CH----HHHHHHHHcC-CcEEEEecccccC---CCCC-cch-HHH
Q 021739 151 SLNWKDVKWLQTITS--LPILVKGVL---------TA----EDASLAIQYG-AAGIIVSNHGARQ---LDYV-PAT-VMA 209 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~--~Pv~vK~~~---------~~----e~a~~~~~~G-~d~i~v~~~gg~~---~~~~-~~~-~~~ 209 (308)
.+..|+++.+|+.++ .||.+++.. +. +.++.+.+.| +|+|.++..+... .... +.. ...
T Consensus 200 Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~ 279 (363)
T COG1902 200 RFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEF 279 (363)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHH
Confidence 356899999999984 589999862 22 3478889999 7999998643211 1111 111 122
Q ss_pred HHHHHHHccCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 210 LEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 210 l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
...++... ++|+|++|+|++++.+.++++.| ||.|.+||+|+..
T Consensus 280 a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 280 AARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD 324 (363)
T ss_pred HHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC
Confidence 23344444 69999999999999999999998 9999999999974
No 93
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.19 E-value=6.2e-09 Score=93.14 Aligned_cols=179 Identities=17% Similarity=0.227 Sum_probs=116.7
Q ss_pred ceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhh--
Q 021739 65 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS-- 142 (308)
Q Consensus 65 ~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~-- 142 (308)
.++.+. +.|.+.+.++++.+.+.|+++|.+++ | |+.|. +| |+..|.
T Consensus 21 ~yit~G-dP~~e~s~e~i~~L~~~GaD~iELGv--P------------fSDPv---------AD--------GP~Iq~A~ 68 (265)
T COG0159 21 PYVTAG-DPDLETSLEIIKTLVEAGADILELGV--P------------FSDPV---------AD--------GPTIQAAH 68 (265)
T ss_pred EEEeCC-CCCHHHHHHHHHHHHhCCCCEEEecC--C------------CCCcC---------cc--------CHHHHHHH
Confidence 344444 56788999999999999999998876 5 34442 11 233333
Q ss_pred --HhhhhcccccCHHHHHHHHHh-cCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------ccc
Q 021739 143 --YVANQIDRSLNWKDVKWLQTI-TSLPILVKGVLTA-------EDASLAIQYGAAGIIVSN---------------HGA 197 (308)
Q Consensus 143 --~~~~~~d~~~~~~~i~~ir~~-~~~Pv~vK~~~~~-------e~a~~~~~~G~d~i~v~~---------------~gg 197 (308)
++......+..++.++++|+. .++|+++-...++ ...+.+.++|+|++.+-. +|-
T Consensus 69 ~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi 148 (265)
T COG0159 69 LRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGI 148 (265)
T ss_pred HHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCC
Confidence 332223344568889999966 6899998876543 347899999999998842 110
Q ss_pred ---------cC----------------------CCCC-cc----hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHc
Q 021739 198 ---------RQ----------------------LDYV-PA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL 241 (308)
Q Consensus 198 ---------~~----------------------~~~~-~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~ 241 (308)
+. ..+. .+ ..+.+.++++.. ++|+...-||++++++.++.+.
T Consensus 149 ~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~ 226 (265)
T COG0159 149 DPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA 226 (265)
T ss_pred cEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh
Confidence 00 0010 11 233445555544 8999999999999999999999
Q ss_pred CCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHH
Q 021739 242 GASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELT 278 (308)
Q Consensus 242 GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~ 278 (308)
||+|.+||+++..+.....+...+.+..+.++|+..
T Consensus 227 -ADGVIVGSAiV~~i~~~~~~~~~~~~~~l~~~l~~~ 262 (265)
T COG0159 227 -ADGVIVGSAIVKIIEEGLDEEALEELRALVKELKAA 262 (265)
T ss_pred -CCeEEEcHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 999999999998754321111223344455555443
No 94
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.19 E-value=2e-10 Score=103.30 Aligned_cols=136 Identities=26% Similarity=0.284 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHH
Q 021739 79 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 158 (308)
Q Consensus 79 ~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 158 (308)
.+..+.++++|++.++++++||.. .+.. + +...+. ..+.|+
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd---------------~~~~-----------------g-g~~Rm~------~p~~I~ 67 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD---------------IRAA-----------------G-GVARMA------DPKMIE 67 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch---------------Hhhc-----------------C-CeeecC------CHHHHH
Confidence 345677889999999999999975 1110 1 111111 236888
Q ss_pred HHHHhcCCCEEEEecCC-HHHHHHHHHcCCcEEEEecccc---------------------------------------c
Q 021739 159 WLQTITSLPILVKGVLT-AEDASLAIQYGAAGIIVSNHGA---------------------------------------R 198 (308)
Q Consensus 159 ~ir~~~~~Pv~vK~~~~-~e~a~~~~~~G~d~i~v~~~gg---------------------------------------~ 198 (308)
++++.+++||+.|.... ..+++.+.++|+|+|.-+..-. +
T Consensus 68 aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~T 147 (293)
T PRK04180 68 EIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRT 147 (293)
T ss_pred HHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeec
Confidence 99999999999997644 6778888888888886543100 0
Q ss_pred C------------------------CC------------CCcchHHHHHHHHHHccCCCeEE--EecCCCCHHHHHHHHH
Q 021739 199 Q------------------------LD------------YVPATVMALEEVVQAAKGRVPVF--LDGGVRRGTDVFKALA 240 (308)
Q Consensus 199 ~------------------------~~------------~~~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~d~~k~l~ 240 (308)
. +. ...+.++.|.++++.. ++||+ +.|||.|++|+.+++.
T Consensus 148 tge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme 225 (293)
T PRK04180 148 KGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQ 225 (293)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHH
Confidence 0 00 0123456667766654 69998 9999999999999999
Q ss_pred cCCCEEEEchHHHHh
Q 021739 241 LGASGVFVGRPVPFS 255 (308)
Q Consensus 241 ~GAd~V~ig~~~l~~ 255 (308)
+||++|.+|+.++..
T Consensus 226 ~GAdgVaVGSaI~ks 240 (293)
T PRK04180 226 LGADGVFVGSGIFKS 240 (293)
T ss_pred hCCCEEEEcHHhhcC
Confidence 999999999998853
No 95
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.14 E-value=7.3e-09 Score=93.51 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=102.5
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhh----
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQ---- 147 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 147 (308)
+.|.+.+.++++.+.+.|++.|.+.+ |. +.|. +| |+..|+.....
T Consensus 22 ~P~~~~~~~~~~~l~~~Gad~iElGi--Pf------------SDP~---------aD--------GpvIq~a~~~AL~~G 70 (258)
T PRK13111 22 DPDLETSLEIIKALVEAGADIIELGI--PF------------SDPV---------AD--------GPVIQAASLRALAAG 70 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--CC------------CCCc---------cc--------CHHHHHHHHHHHHcC
Confidence 45778899999999999999998875 63 3442 11 23333332222
Q ss_pred cccccCHHHHHHHH-HhcCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------ccc-------
Q 021739 148 IDRSLNWKDVKWLQ-TITSLPILVKGVLTA-------EDASLAIQYGAAGIIVSN---------------HGA------- 197 (308)
Q Consensus 148 ~d~~~~~~~i~~ir-~~~~~Pv~vK~~~~~-------e~a~~~~~~G~d~i~v~~---------------~gg------- 197 (308)
...+..++.++++| +..++|+++-...++ ...+.+.++|+|++.+-. +|-
T Consensus 71 ~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 71 VTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 23334578899998 456899887665332 458899999999998842 000
Q ss_pred --c-------------------------CCC-CCcc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021739 198 --R-------------------------QLD-YVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 198 --~-------------------------~~~-~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 248 (308)
+ ... ..+. ..+.+.++++.. ++||+..+||++++|+.+++.. ||+|.+
T Consensus 151 p~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviV 227 (258)
T PRK13111 151 PTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIV 227 (258)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEE
Confidence 0 000 0112 233566666644 7999999999999999998875 999999
Q ss_pred chHHHHhcc
Q 021739 249 GRPVPFSLA 257 (308)
Q Consensus 249 g~~~l~~~~ 257 (308)
|+.++..+.
T Consensus 228 GSaiv~~~~ 236 (258)
T PRK13111 228 GSALVKIIE 236 (258)
T ss_pred cHHHHHHHH
Confidence 999987653
No 96
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=9.5e-10 Score=102.54 Aligned_cols=206 Identities=20% Similarity=0.222 Sum_probs=144.0
Q ss_pred cccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCC-C-CHHHHh---------------------ccCC--
Q 021739 8 FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT-S-SVEEVS---------------------STGP-- 62 (308)
Q Consensus 8 ~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~-~-~~e~i~---------------------~~~~-- 62 (308)
..+.+-+++|||--. |+.+++..|-++|+.++-++.-. . .++-+. ..+|
T Consensus 7 l~y~nk~iLApMvr~------G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMVRA------GELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHHHh------ccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 456788999999322 36689999999999998876521 1 111110 0011
Q ss_pred -CCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhh
Q 021739 63 -GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 141 (308)
Q Consensus 63 -~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~ 141 (308)
....||+. ..+.+...+..+.+.. .+.+|++|++||-+ |+.- .|-++
T Consensus 81 ~~rlilQ~g-T~sa~lA~e~A~lv~n-DvsgidiN~gCpK~----------fSi~-------------------~gmga- 128 (477)
T KOG2334|consen 81 NSRLILQIG-TASAELALEAAKLVDN-DVSGIDINMGCPKE----------FSIH-------------------GGMGA- 128 (477)
T ss_pred cCeEEEEec-CCcHHHHHHHHHHhhc-ccccccccCCCCCc----------cccc-------------------cCCCc-
Confidence 24688886 5667776666665543 56679999999964 2110 01111
Q ss_pred hHhhhhcccccCHHHHHHHHHhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHH
Q 021739 142 SYVANQIDRSLNWKDVKWLQTITSLPILVKGVL------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQ 215 (308)
Q Consensus 142 ~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~------~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~ 215 (308)
..+ .+|+....++..+.+...+|+.+|++. +.+..+++...|+.+|.++.+........+.+.+.+.+++.
T Consensus 129 alL---t~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~ 205 (477)
T KOG2334|consen 129 ALL---TDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQ 205 (477)
T ss_pred hhh---cCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHH
Confidence 122 367777888999999999999999982 34557889999999999987542222234667788888887
Q ss_pred HccCCCeEEEecCCCC---HHHHHHHHH-cCCCEEEEchHHHHh
Q 021739 216 AAKGRVPVFLDGGVRR---GTDVFKALA-LGASGVFVGRPVPFS 255 (308)
Q Consensus 216 ~~~~~ipvia~GGI~~---~~d~~k~l~-~GAd~V~ig~~~l~~ 255 (308)
.+. .+|||++||..+ ..|+.+... .|++.||+.|...+.
T Consensus 206 ~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 206 ACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred Hhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcC
Confidence 773 399999999998 888988877 799999999976654
No 97
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.11 E-value=4.8e-09 Score=92.04 Aligned_cols=190 Identities=15% Similarity=0.130 Sum_probs=125.4
Q ss_pred EEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCC-CC-ccccccccccccccCCCCCCchhhhHh
Q 021739 67 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVL-PP-HLTLKNYEGLYIGKMDKTDDSGLASYV 144 (308)
Q Consensus 67 ~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~-p~-~v~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (308)
+-+....+.+...++++.+.+.|++.+.|++++|..-...+.++..|.. |. .+..+++- +....+.....+++..+
T Consensus 16 i~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~--~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVL--DAVTARLAILAGAQFIV 93 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCC--CHHHHHHHHHcCCCEEE
Confidence 3344477889999999999999999999999988754556777777643 31 23333322 11111111123444444
Q ss_pred hhhcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEE
Q 021739 145 ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 224 (308)
Q Consensus 145 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 224 (308)
+ |.+..+.++..+ ..++|++- ++.|+.++..+.++|+|+|.++... ......+..++..+ ..+|++
T Consensus 94 s----P~~~~~v~~~~~-~~~i~~iP-G~~T~~E~~~A~~~Gad~vklFPa~-------~~G~~~ik~l~~~~-p~ip~~ 159 (213)
T PRK06552 94 S----PSFNRETAKICN-LYQIPYLP-GCMTVTEIVTALEAGSEIVKLFPGS-------TLGPSFIKAIKGPL-PQVNVM 159 (213)
T ss_pred C----CCCCHHHHHHHH-HcCCCEEC-CcCCHHHHHHHHHcCCCEEEECCcc-------cCCHHHHHHHhhhC-CCCEEE
Confidence 4 344456666655 46888764 6789999999999999999985421 11244555555444 369999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHH
Q 021739 225 LDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRD 273 (308)
Q Consensus 225 a~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~ 273 (308)
+.|||. .+++.+++++||+++.+|+.|+........+.+.+..+.+++
T Consensus 160 atGGI~-~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~ 207 (213)
T PRK06552 160 VTGGVN-LDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMS 207 (213)
T ss_pred EECCCC-HHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHH
Confidence 999998 899999999999999999999754322223444444444433
No 98
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.11 E-value=1.1e-08 Score=90.35 Aligned_cols=99 Identities=23% Similarity=0.254 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccC--CCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 154 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ--LDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
.+.++++++..++|+++ .+.+++++..+.++|+|++.+.++|.+. .....+.++.+.++++.+ ++|+++.|||++
T Consensus 112 ~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~ 188 (219)
T cd04729 112 AELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINS 188 (219)
T ss_pred HHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCC
Confidence 45677887765688876 4568899999999999999765444221 112234677888887766 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHh
Q 021739 232 GTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 232 ~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
++|+.+++.+|||+|++|+.++..
T Consensus 189 ~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 189 PEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred HHHHHHHHHCCCCEEEEchHHhCh
Confidence 999999999999999999998753
No 99
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.09 E-value=2.9e-08 Score=94.09 Aligned_cols=99 Identities=14% Similarity=-0.060 Sum_probs=71.0
Q ss_pred ccCHHHHHHHHHhcC-CCEEEEec-----------CCHHH-----HHHHHHcCCcEEEEecccccCCCCCcc-hHHHHHH
Q 021739 151 SLNWKDVKWLQTITS-LPILVKGV-----------LTAED-----ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEE 212 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~-~Pv~vK~~-----------~~~e~-----a~~~~~~G~d~i~v~~~gg~~~~~~~~-~~~~l~~ 212 (308)
.+..|+|++||+.++ -+|.+|+. .+.++ ++.+.+.|+|+|.++.... ....+ ....-.+
T Consensus 210 Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~---~~~~~~~~~~~~~ 286 (362)
T PRK10605 210 RLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW---AGGEPYSDAFREK 286 (362)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccc---cCCccccHHHHHH
Confidence 356789999999873 25888864 23333 5778889999999985311 11111 1223355
Q ss_pred HHHHccCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 213 VVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 213 i~~~~~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
+++.+ ++||++.|++ +++++.++++.| ||+|++||+++..
T Consensus 287 ik~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 287 VRARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HHHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhC
Confidence 55555 6899999996 899999999988 9999999999964
No 100
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.08 E-value=7.8e-09 Score=90.36 Aligned_cols=169 Identities=18% Similarity=0.179 Sum_probs=113.1
Q ss_pred eecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcc
Q 021739 70 YVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQID 149 (308)
Q Consensus 70 ~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 149 (308)
....+.+...+.++.+.+.|++.+.++...|..-...+.++..|..+..+..+++-.. +..+.....+++..++|
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~--~~~~~a~~aGA~fivsp--- 90 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSP--EQVDRLADAGGRLIVTP--- 90 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCH--HHHHHHHHcCCCEEECC---
Confidence 3367888888999999999999999998887543456677766754323332222110 11111111222233333
Q ss_pred cccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCC
Q 021739 150 RSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 229 (308)
Q Consensus 150 ~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (308)
..+.+.++.. ...+.|++.. +.|++++..+.+.|+|+|.++... ....+.+..+++.+...+|+++.|||
T Consensus 91 -~~~~~v~~~~-~~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa~-------~~G~~~l~~l~~~~~~~ipvvaiGGI 160 (206)
T PRK09140 91 -NTDPEVIRRA-VALGMVVMPG-VATPTEAFAALRAGAQALKLFPAS-------QLGPAGIKALRAVLPPDVPVFAVGGV 160 (206)
T ss_pred -CCCHHHHHHH-HHCCCcEEcc-cCCHHHHHHHHHcCCCEEEECCCC-------CCCHHHHHHHHhhcCCCCeEEEECCC
Confidence 2334445444 4567787765 789999999999999999974321 12355666666554336999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 230 RRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.+++.+.+++||++|.+++.++.
T Consensus 161 -~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 161 -TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred -CHHHHHHHHHCCCeEEEEehHhcc
Confidence 789999999999999999999875
No 101
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.07 E-value=2.3e-08 Score=89.82 Aligned_cols=166 Identities=16% Similarity=0.189 Sum_probs=103.2
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
+.+.+.+.++++.+++. +++|.+++-||-+ . . + |...+..........
T Consensus 14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp--------------~------a---d--------G~~i~~~~~~a~~~g 61 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL-VDILELGIPPKYP--------------K------Y---D--------GPVIRKSHRKVKGLD 61 (244)
T ss_pred CCCHHHHHHHHHHHHhh-CCEEEECCCCCCC--------------C------C---C--------CHHHHHHHHHHHHcC
Confidence 35678888899988887 9999999865532 0 0 0 122222211111112
Q ss_pred cCHHHHHHHHHhcCCCEE--EEec---CCHHH-HHHHHHcCCcEEEEec-------cc----------c----------c
Q 021739 152 LNWKDVKWLQTITSLPIL--VKGV---LTAED-ASLAIQYGAAGIIVSN-------HG----------A----------R 198 (308)
Q Consensus 152 ~~~~~i~~ir~~~~~Pv~--vK~~---~~~e~-a~~~~~~G~d~i~v~~-------~g----------g----------~ 198 (308)
+ ++.++++|+.+++|+. +|.. .+++. ++.+.++|+|++.+.. +. | +
T Consensus 62 ~-~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T 140 (244)
T PRK13125 62 I-WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKF 140 (244)
T ss_pred c-HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 2 6899999988899975 3332 24443 7889999999999862 00 0 0
Q ss_pred C----------C-----------CCC--cc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 199 Q----------L-----------DYV--PA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 199 ~----------~-----------~~~--~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
. . .++ .+ ..+.+.++++.. .+.||+++|||+|++++.+++..|||++.+||.++.
T Consensus 141 ~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~-~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 141 PDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLV-GNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc-CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 0 001 01 123445555443 247899999999999999999999999999999886
Q ss_pred hcccCCHHHHHHHHHHH
Q 021739 255 SLAVDGEAGVRKVLQML 271 (308)
Q Consensus 255 ~~~~~G~~~v~~~i~~l 271 (308)
.+..++.+...++++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~ 236 (244)
T PRK13125 220 ELEKNGVESALNLLKKI 236 (244)
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 44323333333344333
No 102
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.06 E-value=2.5e-08 Score=89.58 Aligned_cols=98 Identities=26% Similarity=0.294 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCC-----------------------------C-CC
Q 021739 154 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL-----------------------------D-YV 203 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~-----------------------------~-~~ 203 (308)
.+.++.+|..++.|++. .+.+.+++.++.+.|+|.|.-...|++.. . ..
T Consensus 101 ~~~~~~iK~~~~~l~MA-D~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKVPFVC-GARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCCcEEc-cCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 35788888888888775 56899999999999999998776554431 0 11
Q ss_pred cchHHHHHHHHHHccCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 204 PATVMALEEVVQAAKGRVPVF--LDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 204 ~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+.++.|.++.+.. ++||+ +.|||.+++|+.+++.+||++|++|+.++.
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 35677888887765 69997 999999999999999999999999999985
No 103
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.04 E-value=1e-08 Score=96.45 Aligned_cols=226 Identities=19% Similarity=0.230 Sum_probs=129.4
Q ss_pred eeecCcccCCceEeccccCcccCCCH------HHHHHHHHHHHcCCceeecCCCCC--------------CH------HH
Q 021739 3 TTVLGFNISMPIMIAPTAFQKMAHPE------GECATARAASAAGTIMTLSSWATS--------------SV------EE 56 (308)
Q Consensus 3 t~~~g~~~~~Pi~iapm~~~~~~~~~------~~~~~a~~a~~~g~~~~~s~~~~~--------------~~------e~ 56 (308)
.+|.+.++++.|+++||+... ..++ ....+-+.-++-|+++++++.... +. ++
T Consensus 6 ~~ig~~~lkNRiv~apm~~~~-~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~ 84 (341)
T PF00724_consen 6 LKIGNLTLKNRIVMAPMTTNM-ADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKK 84 (341)
T ss_dssp EEETTEEESSSEEE----SST-SCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHH
T ss_pred eeECCEEecCCeEECCCCCCC-cccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHH
Confidence 478899999999999996431 2222 335566666777889888765211 11 11
Q ss_pred Hhc---cCCCCceEEeeec----------------C-------------------Cch-------HHHHHHHHHHHcCCc
Q 021739 57 VSS---TGPGIRFFQLYVT----------------K-------------------HRN-------VDAQLVKRAERAGFK 91 (308)
Q Consensus 57 i~~---~~~~~~~~Ql~~~----------------~-------------------d~~-------~~~~~~~~~~~~g~~ 91 (308)
+.. ......++||+.. + ..+ ...+..++++++|||
T Consensus 85 l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGfD 164 (341)
T PF00724_consen 85 LADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGFD 164 (341)
T ss_dssp HHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 111 1112556666621 0 011 222444567788999
Q ss_pred EEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhc--CCCEE
Q 021739 92 AIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT--SLPIL 169 (308)
Q Consensus 92 ~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~ 169 (308)
++.|+..+ |+-. +.|.-| ..+.|+ + +..|+ + +.-..+..|+|++||+.+ +.||.
T Consensus 165 GVEIH~ah---GyLl----~qFLSp-~~N~Rt-D--------eYGGs----~---ENR~Rf~~Eii~aIr~~vg~d~~v~ 220 (341)
T PF00724_consen 165 GVEIHAAH---GYLL----SQFLSP-LTNRRT-D--------EYGGS----L---ENRARFLLEIIEAIREAVGPDFPVG 220 (341)
T ss_dssp EEEEEEST---TSHH----HHHHST-TT---S-S--------TTSSS----H---HHHHHHHHHHHHHHHHHHTGGGEEE
T ss_pred eEeecccc---hhhh----hheeee-ccCCCc-h--------hhhhh----h---chhhHHHHHHHHHHHHHhcCCceEE
Confidence 99998643 3221 223222 111110 0 11011 0 011235678999999986 68899
Q ss_pred EEecCC---------H---HHHHHHHHcCCcEEEEecccc----cCC---C-CCcc--hHHHHHHHHHHccCCCeEEEec
Q 021739 170 VKGVLT---------A---EDASLAIQYGAAGIIVSNHGA----RQL---D-YVPA--TVMALEEVVQAAKGRVPVFLDG 227 (308)
Q Consensus 170 vK~~~~---------~---e~a~~~~~~G~d~i~v~~~gg----~~~---~-~~~~--~~~~l~~i~~~~~~~ipvia~G 227 (308)
+|+... . +.++.+.+.|+|.+.++.... ... . .... .......+++.+ ++|||++|
T Consensus 221 ~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~--~~pvi~~G 298 (341)
T PF00724_consen 221 VRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV--KIPVIGVG 298 (341)
T ss_dssp EEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH--SSEEEEES
T ss_pred EEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc--CceEEEEe
Confidence 998621 1 236788899999987764221 100 0 0111 123445556655 79999999
Q ss_pred CCCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 228 GVRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 228 GI~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
||++++.+.++++.| ||+|.+||+++..
T Consensus 299 ~i~~~~~ae~~l~~g~~DlV~~gR~~lad 327 (341)
T PF00724_consen 299 GIRTPEQAEKALEEGKADLVAMGRPLLAD 327 (341)
T ss_dssp STTHHHHHHHHHHTTSTSEEEESHHHHH-
T ss_pred eecchhhhHHHHhcCCceEeeccHHHHhC
Confidence 999999999999988 9999999999974
No 104
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=99.04 E-value=3.8e-10 Score=102.69 Aligned_cols=175 Identities=18% Similarity=0.232 Sum_probs=125.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHH
Q 021739 79 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 158 (308)
Q Consensus 79 ~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 158 (308)
.++.++.+++|.+.+.+|+.||.. ++. . +-+-.+. .+|...-|.-.
T Consensus 221 ~el~d~~eqag~d~lE~nlscphg------------m~e----------------r----gmgla~g--q~p~v~~EvC~ 266 (471)
T KOG1799|consen 221 MELNDSGEQAGQDDLETNLSCPHG------------MCE----------------R----GMGLALG--QCPIVDCEVCG 266 (471)
T ss_pred HHHhhhHHhhcccchhccCCCCCC------------Ccc----------------c----cccceec--cChhhhHHHhh
Confidence 345566677788888888877752 111 0 0011222 25666678899
Q ss_pred HHHHhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEeccc------------------ccCCCCC-------cchHHH
Q 021739 159 WLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVSNHG------------------ARQLDYV-------PATVMA 209 (308)
Q Consensus 159 ~ir~~~~~Pv~vK~~~~~----e~a~~~~~~G~d~i~v~~~g------------------g~~~~~~-------~~~~~~ 209 (308)
||+....+|++-|...+. |.++.+...|+.+|...|.- ++...++ |.....
T Consensus 267 Wi~A~~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~ 346 (471)
T KOG1799|consen 267 WINAKATIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAK 346 (471)
T ss_pred hhhhccccccccccCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHH
Confidence 999999999999987643 45777788888888766520 1111111 333445
Q ss_pred HHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHhh
Q 021739 210 LEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKE 289 (308)
Q Consensus 210 l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~~~i~~ 289 (308)
+..+++.++ ..|+.+.|||.++.|.+..+.+|++.|++++..+. +|+. .+..+-.+|+.+|.++|+++|++
T Consensus 347 V~~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~ 417 (471)
T KOG1799|consen 347 VMNIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFSTIEE 417 (471)
T ss_pred HHHHHHHhh-cCccccccCcccccchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchhhhh
Confidence 555665553 68999999999999999999999999999998875 3553 34577889999999999999999
Q ss_pred hccccee
Q 021739 290 ITRNHIV 296 (308)
Q Consensus 290 l~~~~~~ 296 (308)
+|++.+.
T Consensus 418 ~~G~SL~ 424 (471)
T KOG1799|consen 418 FRGHSLQ 424 (471)
T ss_pred ccCcchh
Confidence 9998765
No 105
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.03 E-value=7.4e-09 Score=87.83 Aligned_cols=96 Identities=25% Similarity=0.262 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCC-CCcchHHHHHHHHHHccCCCeEEEecCCCCH
Q 021739 154 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD-YVPATVMALEEVVQAAKGRVPVFLDGGVRRG 232 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (308)
.+.++++|+.. -+++-.+.+.|++..+.++|+|.|.-...|.+... ...|+++.+.++.+. .+|||+.|+|.++
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~---~~pvIaEGri~tp 156 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA---DVPVIAEGRIHTP 156 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT---TSEEEEESS--SH
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC---CCcEeecCCCCCH
Confidence 46799999987 55556789999999999999999976655544321 245788999888753 7999999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 021739 233 TDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 233 ~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+++.+++.+||++|.+|+++-.
T Consensus 157 e~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 157 EQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHHHHHTT-SEEEE-HHHH-
T ss_pred HHHHHHHhcCCeEEEECcccCC
Confidence 9999999999999999998865
No 106
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=99.01 E-value=1.7e-08 Score=90.93 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=101.3
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhh----hh
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVA----NQ 147 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 147 (308)
+.|.+.+.++++.+.+.|++.|.|++ |. +.|. +| |+..|.+.. ..
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGi--Pf------------SDP~---------AD--------GpvIq~A~~rAL~~G 68 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGI--PF------------SDPV---------AD--------GPVIQKASQRALKNG 68 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE----S------------SSCT---------TS--------SHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CC------------CCCC---------CC--------CHHHHHHHHHHHHCC
Confidence 35678999999999999999999886 53 3441 01 333443332 22
Q ss_pred cccccCHHHHHHHH-HhcCCCEEEEecCC------H-HHHHHHHHcCCcEEEEec---------------ccc-------
Q 021739 148 IDRSLNWKDVKWLQ-TITSLPILVKGVLT------A-EDASLAIQYGAAGIIVSN---------------HGA------- 197 (308)
Q Consensus 148 ~d~~~~~~~i~~ir-~~~~~Pv~vK~~~~------~-e~a~~~~~~G~d~i~v~~---------------~gg------- 197 (308)
.+.+..++.++++| +..++|+++-...+ . ..++.+.++|+|++.+-. +|-
T Consensus 69 ~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~ 148 (259)
T PF00290_consen 69 FTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVA 148 (259)
T ss_dssp --HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEEC
Confidence 33444578899999 66799999887533 2 357888999999998843 110
Q ss_pred --c----------------------CCCCC----cc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021739 198 --R----------------------QLDYV----PA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 198 --~----------------------~~~~~----~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 248 (308)
+ ...+. +. ..+.+.++++.. ++||.+.-||++++|+.+.. .|||+|.+
T Consensus 149 p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIV 225 (259)
T PF00290_consen 149 PTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIV 225 (259)
T ss_dssp TTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEE
T ss_pred CCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEE
Confidence 0 00011 11 123455555544 79999999999999999877 99999999
Q ss_pred chHHHHhcccCC
Q 021739 249 GRPVPFSLAVDG 260 (308)
Q Consensus 249 g~~~l~~~~~~G 260 (308)
||+++..+...+
T Consensus 226 GSa~v~~i~~~~ 237 (259)
T PF00290_consen 226 GSAFVKIIEENG 237 (259)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHcc
Confidence 999998764333
No 107
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.99 E-value=7.2e-08 Score=86.69 Aligned_cols=99 Identities=27% Similarity=0.275 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCC---------------------C----------C
Q 021739 154 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL---------------------D----------Y 202 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~---------------------~----------~ 202 (308)
.+.+..+|+.++.|+++ .+.+.+++.+..+.|+|.|.-.+.+++.. . .
T Consensus 103 de~~~~~K~~f~vpfma-d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVPFVC-GARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 35678888888999886 46789999999999999998776555431 0 0
Q ss_pred CcchHHHHHHHHHHccCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 203 VPATVMALEEVVQAAKGRVPVF--LDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 203 ~~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
-.+.++.|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+|+.++.+
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks 234 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 234 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcC
Confidence 124677788877654 79998 9999999999999999999999999998863
No 108
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.99 E-value=2.3e-08 Score=88.12 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEecccc------------------------------------
Q 021739 155 KDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGA------------------------------------ 197 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~gg------------------------------------ 197 (308)
+.++.+++.+++||++|.. .+.++++.+.++|+|++.+....-
T Consensus 62 ~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g 141 (217)
T cd00331 62 EDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALG 141 (217)
T ss_pred HHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcC
Confidence 4666666666777777754 445567777777777777543100
Q ss_pred --------cCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 198 --------RQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 198 --------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+......+..+.+.++++.+..++|+++.|||.+++|+.+++.+||++|.+|++++..
T Consensus 142 ~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 142 AKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred CCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 0000012234555666555434689999999999999999999999999999998864
No 109
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.98 E-value=4.4e-08 Score=87.83 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=100.8
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
+.+.+.+.+.++.++++|++.|.+++ |. +.|. . |...++ +....++......+
T Consensus 10 ~P~~~~~~~~~~~l~~~Gad~iel~i--Pf------------sdPv-~--------DG~~I~----~a~~~al~~g~~~~ 62 (242)
T cd04724 10 DPDLETTLEILKALVEAGADIIELGI--PF------------SDPV-A--------DGPVIQ----AASERALANGVTLK 62 (242)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--CC------------CCCC-C--------CCHHHH----HHHHHHHHcCCCHH
Confidence 34667888999999999999988875 64 2231 0 100011 11122232222334
Q ss_pred cCHHHHHHHHHhcCCCEEEEecCC-------HHHHHHHHHcCCcEEEEec---------------ccc---------cC-
Q 021739 152 LNWKDVKWLQTITSLPILVKGVLT-------AEDASLAIQYGAAGIIVSN---------------HGA---------RQ- 199 (308)
Q Consensus 152 ~~~~~i~~ir~~~~~Pv~vK~~~~-------~e~a~~~~~~G~d~i~v~~---------------~gg---------~~- 199 (308)
..++.++++|+..++|+.+-...+ ...++.+.++|+|++++.. +|- +.
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~ 142 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPD 142 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 567889999988889977644333 3458889999999998821 010 00
Q ss_pred ----------C-----------CCC-----cchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 200 ----------L-----------DYV-----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 200 ----------~-----------~~~-----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
. .++ ....+.+.++++. .++||+..|||++.+++.++... ||++.+|+.++
T Consensus 143 ~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~--~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 143 ERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY--TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc--CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 0 011 1123445556554 27999999999999999999999 99999999998
Q ss_pred Hhc
Q 021739 254 FSL 256 (308)
Q Consensus 254 ~~~ 256 (308)
..+
T Consensus 220 ~~~ 222 (242)
T cd04724 220 KII 222 (242)
T ss_pred HHH
Confidence 764
No 110
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.92 E-value=7e-08 Score=87.40 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEecccc----------------cC-----------------
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGA----------------RQ----------------- 199 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~gg----------------~~----------------- 199 (308)
++.++.+++.+++||+.|.. .++.++..+.++|||+|.+....- ..
T Consensus 100 ~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~ 179 (260)
T PRK00278 100 LEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL 179 (260)
T ss_pred HHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc
Confidence 57889999989999999976 556788999999999998865220 00
Q ss_pred -----------CCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 200 -----------LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 200 -----------~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
.....+..+...++.+..+...++|+.|||.+++|+.+++.+|||+|.+|+.++..
T Consensus 180 gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 180 GAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 00112234455565555443579999999999999999999999999999999864
No 111
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=4.5e-07 Score=77.47 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccC--CCCCcchHHHHHHHHHHccCCCeEEEecCCCCHH
Q 021739 156 DVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ--LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 233 (308)
Q Consensus 156 ~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (308)
.++++ +..--+..-.+.+.|+...+.++|+|+|--.-+|.+. .....|+++.+.++.+ .+++||+.|.+.||+
T Consensus 119 ~i~~~--k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~---~~~~vIAEGr~~tP~ 193 (229)
T COG3010 119 LIARI--KYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD---AGCRVIAEGRYNTPE 193 (229)
T ss_pred HHHHh--hcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh---CCCeEEeeCCCCCHH
Confidence 44552 2344566677899999999999999999644344332 1223467888888765 279999999999999
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 021739 234 DVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 234 d~~k~l~~GAd~V~ig~~~l~ 254 (308)
++.+++..||++|.+|+++-.
T Consensus 194 ~Ak~a~~~Ga~aVvVGsAITR 214 (229)
T COG3010 194 QAKKAIEIGADAVVVGSAITR 214 (229)
T ss_pred HHHHHHHhCCeEEEECcccCC
Confidence 999999999999999998754
No 112
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.86 E-value=6.9e-08 Score=83.95 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=116.2
Q ss_pred EEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhh
Q 021739 67 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVAN 146 (308)
Q Consensus 67 ~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (308)
+-+....+.+...+.++.+.+.|++.+.+++++|-.-...+.++..|. ...+..+++.. ....+.....+++..++|
T Consensus 11 iaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~--~~~a~~a~~aGA~FivsP 87 (204)
T TIGR01182 11 VPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLN--PEQLRQAVDAGAQFIVSP 87 (204)
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCC--HHHHHHHHHcCCCEEECC
Confidence 334447788999999999999999999999998865445677776663 12233333321 111111112333444443
Q ss_pred hcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEe
Q 021739 147 QIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLD 226 (308)
Q Consensus 147 ~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~ 226 (308)
.++.+.++..+ ..++|++- ++.|+.++..+.++|+|.|.++-.+- .+++. .++.++.-+ +.+|++.+
T Consensus 88 ----~~~~~v~~~~~-~~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~~---~GG~~---yikal~~pl-p~i~~~pt 154 (204)
T TIGR01182 88 ----GLTPELAKHAQ-DHGIPIIP-GVATPSEIMLALELGITALKLFPAEV---SGGVK---MLKALAGPF-PQVRFCPT 154 (204)
T ss_pred ----CCCHHHHHHHH-HcCCcEEC-CCCCHHHHHHHHHCCCCEEEECCchh---cCCHH---HHHHHhccC-CCCcEEec
Confidence 34456666655 46888775 78999999999999999999975321 11233 333333323 57999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 227 GGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 227 GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
|||. .+++.+++.+|+.+|++|+.++.
T Consensus 155 GGV~-~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 155 GGIN-LANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred CCCC-HHHHHHHHhCCCEEEEEChhhcC
Confidence 9998 59999999999999999998874
No 113
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.79 E-value=1.5e-07 Score=82.90 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=114.4
Q ss_pred eeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccC--CCC-ccccccccccccccCCCCCCchhhhHhh
Q 021739 69 LYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFV--LPP-HLTLKNYEGLYIGKMDKTDDSGLASYVA 145 (308)
Q Consensus 69 l~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~--~p~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (308)
+....|.+...++++.+.+.|++.+.|++++|..-...+.++..|. .|. .+..+++. +....+.....+++..++
T Consensus 20 Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl--~~e~a~~a~~aGA~FiVs 97 (222)
T PRK07114 20 VFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIV--DAATAALYIQLGANFIVT 97 (222)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCc--CHHHHHHHHHcCCCEEEC
Confidence 3337788999999999999999999999999875555566654442 231 23222222 111111111234444444
Q ss_pred hhcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEE
Q 021739 146 NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 225 (308)
Q Consensus 146 ~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (308)
|.++.+.++..++ .++|++ -++.|+.++..+.++|+|.|.++-.+ ..++ ..++.++.-+ +.++++.
T Consensus 98 ----P~~~~~v~~~~~~-~~i~~i-PG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~---~~ikal~~p~-p~i~~~p 163 (222)
T PRK07114 98 ----PLFNPDIAKVCNR-RKVPYS-PGCGSLSEIGYAEELGCEIVKLFPGS----VYGP---GFVKAIKGPM-PWTKIMP 163 (222)
T ss_pred ----CCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECccc----ccCH---HHHHHHhccC-CCCeEEe
Confidence 3444566666654 578876 46789999999999999999997532 1133 3333333222 4799999
Q ss_pred ecCCCC-HHHHHHHHHcCCCEEEEchHHHH
Q 021739 226 DGGVRR-GTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 226 ~GGI~~-~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+|||.- .+++.+++.+|+.+|++|+.++-
T Consensus 164 tGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 164 TGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred CCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 999985 58999999999999999998763
No 114
>PLN02411 12-oxophytodienoate reductase
Probab=98.79 E-value=7.9e-07 Score=85.13 Aligned_cols=102 Identities=13% Similarity=-0.009 Sum_probs=68.5
Q ss_pred ccCHHHHHHHHHhcC-CCEEEEecCC---------------HHHHHHHHHc------CCcEEEEecccccC---CC---C
Q 021739 151 SLNWKDVKWLQTITS-LPILVKGVLT---------------AEDASLAIQY------GAAGIIVSNHGARQ---LD---Y 202 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~-~Pv~vK~~~~---------------~e~a~~~~~~------G~d~i~v~~~gg~~---~~---~ 202 (308)
.|..|+|++||+.++ -.|.+|+... .+.++.+.+. |+|+|.++...... .. .
T Consensus 216 RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~ 295 (391)
T PLN02411 216 RFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRH 295 (391)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccccc
Confidence 456799999999873 2488887631 1124444442 59999998632110 00 0
Q ss_pred Ccc-hH-HHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 203 VPA-TV-MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 203 ~~~-~~-~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
... .. ....++++.+ ++|||++|+| +.+++.++++.| ||+|.+||+++..
T Consensus 296 ~~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iad 348 (391)
T PLN02411 296 GSEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISN 348 (391)
T ss_pred CCccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhC
Confidence 111 11 2335566665 6899999999 579999999999 9999999999864
No 115
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.74 E-value=1.5e-07 Score=84.40 Aligned_cols=77 Identities=23% Similarity=0.249 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH---cCCCEEEEchHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA---LGASGVFVGRPV 252 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~---~GAd~V~ig~~~ 252 (308)
.+.++.+.+.|++.+.+++....+...++ .++.+.++.+.+ ++|||++|||+|.+|+.++.. .||++|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 45688999999999999875543344454 799999988775 799999999999999999865 499999999999
Q ss_pred HHh
Q 021739 253 PFS 255 (308)
Q Consensus 253 l~~ 255 (308)
+.+
T Consensus 226 ~~g 228 (241)
T PRK14024 226 YAG 228 (241)
T ss_pred HcC
Confidence 874
No 116
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.73 E-value=1.3e-07 Score=84.82 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHc-CCCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL-GASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~-GAd~V~ig~~~l~ 254 (308)
.+.++.+.+.|+|+|.+++....... ....++.+.++.+.+ ++||+++|||++++|+.+++.. |||+|++||++..
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~~-~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGTK-KGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCCC-CCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 46678999999999999764321111 123577788877665 7999999999999999999996 9999999999987
Q ss_pred h
Q 021739 255 S 255 (308)
Q Consensus 255 ~ 255 (308)
+
T Consensus 229 ~ 229 (243)
T cd04731 229 G 229 (243)
T ss_pred C
Confidence 4
No 117
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.73 E-value=1.9e-07 Score=80.60 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=103.2
Q ss_pred eeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhc
Q 021739 69 LYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQI 148 (308)
Q Consensus 69 l~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (308)
+....+++...+.++.+.+.|++.+.+++..+..-...+.++..+.. ..+..+++.. .+.++.....++...+.+
T Consensus 9 i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~-~~iGag~v~~--~~~~~~a~~~Ga~~i~~p-- 83 (190)
T cd00452 9 VLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPE-ALIGAGTVLT--PEQADAAIAAGAQFIVSP-- 83 (190)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCC-CEEEEEeCCC--HHHHHHHHHcCCCEEEcC--
Confidence 44466778888888888888999998888766422234555544421 1111111110 000000000111122222
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
....+.++. ++..+.|+++ ++.|++++..+.++|+|+|.++... +...+.+..+.+.+ ..+|+++.||
T Consensus 84 --~~~~~~~~~-~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~~-------~~g~~~~~~l~~~~-~~~p~~a~GG 151 (190)
T cd00452 84 --GLDPEVVKA-ANRAGIPLLP-GVATPTEIMQALELGADIVKLFPAE-------AVGPAYIKALKGPF-PQVRFMPTGG 151 (190)
T ss_pred --CCCHHHHHH-HHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCCc-------ccCHHHHHHHHhhC-CCCeEEEeCC
Confidence 222344444 4446788876 4569999999999999999985321 11344555554433 2599999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 229 VRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
| +.+++.+++.+||++|.+++.+..
T Consensus 152 I-~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 152 V-SLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred C-CHHHHHHHHHCCCEEEEEchhcch
Confidence 9 899999999999999999998763
No 118
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.73 E-value=5.2e-07 Score=78.28 Aligned_cols=168 Identities=13% Similarity=0.075 Sum_probs=112.1
Q ss_pred eeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhc
Q 021739 69 LYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQI 148 (308)
Q Consensus 69 l~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (308)
+....+.+...++++.+.+.|++.+.|++++|..-.-.+.++..|. ...+..+++- +....+.....+++..++
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~-~~~vGAGTVl--~~e~a~~ai~aGA~FivS--- 82 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVE-EAIVGAGTIL--NAKQFEDAAKAGSRFIVS--- 82 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEeeEeCc--CHHHHHHHHHcCCCEEEC---
Confidence 3436788999999999999999999999998875445667776662 1123333332 111111111234444444
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
|.+..+.++..+ ..++|++ -+++|+.++..+.++|+|.|.++-.+- .+++ ..++.++.-+ +.+|++.+||
T Consensus 83 -P~~~~~vi~~a~-~~~i~~i-PG~~TptEi~~A~~~Ga~~vK~FPa~~---~GG~---~yikal~~pl-p~~~l~ptGG 152 (201)
T PRK06015 83 -PGTTQELLAAAN-DSDVPLL-PGAATPSEVMALREEGYTVLKFFPAEQ---AGGA---AFLKALSSPL-AGTFFCPTGG 152 (201)
T ss_pred -CCCCHHHHHHHH-HcCCCEe-CCCCCHHHHHHHHHCCCCEEEECCchh---hCCH---HHHHHHHhhC-CCCcEEecCC
Confidence 344556676655 4688876 467899999999999999999975321 1123 3344443333 4799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 229 VRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
|. .+++.+++.+|+..++.|+.+.
T Consensus 153 V~-~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 153 IS-LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred CC-HHHHHHHHhCCCeEEEEchhhC
Confidence 98 5899999999988777666554
No 119
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.69 E-value=3.6e-07 Score=80.69 Aligned_cols=98 Identities=22% Similarity=0.178 Sum_probs=72.6
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccC
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG 219 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~-----~~~e~----a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~ 219 (308)
+.+...+.++++++.. .|+.+|.+ ++.++ ++.+.++|+|+|..+.+. ..+..+.+.+..+++.+++
T Consensus 104 ~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~----~~~gat~~~v~~m~~~~~~ 178 (221)
T PRK00507 104 DWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF----STGGATVEDVKLMRETVGP 178 (221)
T ss_pred CHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCC
Confidence 3334456788888765 47888985 44443 467789999988764321 1233567777777777777
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 021739 220 RVPVFLDGGVRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 220 ~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
+++|.++|||+|.+|+.+.+.+||+.++..+.
T Consensus 179 ~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 179 RVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred CceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 89999999999999999999999999887654
No 120
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.69 E-value=4.4e-07 Score=82.18 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHH-HcCCCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL-ALGASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l-~~GAd~V~ig~~~l~ 254 (308)
.+.++.+.+.|++.+.+.+...-+...+ +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|.|
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 3567889999999999876433223334 4788888888765 79999999999999999999 699999999999998
Q ss_pred h
Q 021739 255 S 255 (308)
Q Consensus 255 ~ 255 (308)
.
T Consensus 232 ~ 232 (258)
T PRK01033 232 K 232 (258)
T ss_pred C
Confidence 4
No 121
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.68 E-value=5.6e-07 Score=80.86 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEeccc----------------c-------------------
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHG----------------A------------------- 197 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~g----------------g------------------- 197 (308)
++.++.+++.+++|+..|.. .++.+...+..+|||+|.+...- |
T Consensus 98 ~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~ 177 (254)
T PF00218_consen 98 LEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEA 177 (254)
T ss_dssp HHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHc
Confidence 57889999999999999975 78899999999999999885421 0
Q ss_pred ---------cCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 198 ---------RQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 198 ---------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+.+.....+.....++...++.++.+|+.+||.+++|+.++...|+|+|.+|+.++..
T Consensus 178 ~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 178 GADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp T-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred CCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 0111112233333455555555789999999999999999999999999999999975
No 122
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.67 E-value=1.2e-06 Score=77.85 Aligned_cols=75 Identities=27% Similarity=0.233 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHH-HHHcCCCEEEEchHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK-ALALGASGVFVGRPVP 253 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k-~l~~GAd~V~ig~~~l 253 (308)
.+.++.+.++|+|.|.+++....+...+ +.++.+.++.+.+ ++||+++|||++.+|+.+ ....|||+|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 4668999999999999987432222223 4678888887765 799999999999999999 5558999999999874
No 123
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.67 E-value=3e-07 Score=81.71 Aligned_cols=77 Identities=27% Similarity=0.288 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~ 254 (308)
.+.++.+.+.|++.|.+......+...+ +.++.+.++.+.+ ++|+|++|||++.+|+.+++..| |++|++||++++
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4667888899999888765432222234 5788888888765 69999999999999999999988 999999999987
Q ss_pred h
Q 021739 255 S 255 (308)
Q Consensus 255 ~ 255 (308)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 4
No 124
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.66 E-value=5.3e-07 Score=77.73 Aligned_cols=169 Identities=14% Similarity=0.151 Sum_probs=98.8
Q ss_pred eeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhc
Q 021739 69 LYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQI 148 (308)
Q Consensus 69 l~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (308)
+....+.+...+.++.+-+.|++.+.++...+........++..+..- .+...++-.. +..+.....++...+.+.
T Consensus 17 v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~-~~g~gtvl~~--d~~~~A~~~gAdgv~~p~- 92 (187)
T PRK07455 17 VIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPEC-IIGTGTILTL--EDLEEAIAAGAQFCFTPH- 92 (187)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCc-EEeEEEEEcH--HHHHHHHHcCCCEEECCC-
Confidence 343667777777777777777777777766554322233333222110 0100001000 000000001111222222
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
...+ +...++..+++.++. +.|++++..+.+.|+|+|.++-.. .....+.+..++..+ ..+|+++.||
T Consensus 93 ---~~~~-~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt~------~~~G~~~l~~~~~~~-~~ipvvaiGG 160 (187)
T PRK07455 93 ---VDPE-LIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPVQ------AVGGADYIKSLQGPL-GHIPLIPTGG 160 (187)
T ss_pred ---CCHH-HHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcCC------cccCHHHHHHHHhhC-CCCcEEEeCC
Confidence 2223 344555567787766 889999999999999999984321 111245566665544 3599999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 229 VRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
| +.+++...+++||++|.+++.++.
T Consensus 161 I-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 161 V-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred C-CHHHHHHHHHCCCeEEEEehhccc
Confidence 9 589999999999999999998753
No 125
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.62 E-value=5.8e-07 Score=79.81 Aligned_cols=77 Identities=29% Similarity=0.324 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
.+.++.+.+.|++.+.+..........+ +.++.+.++.+.+ ++|++++|||++.+|+.+++..||++|++|+.++.+
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSG-PNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 3567889999999998765432222223 4688888887765 799999999999999999999999999999999874
No 126
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.59 E-value=2.2e-06 Score=76.57 Aligned_cols=77 Identities=27% Similarity=0.347 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
.+.++.+.+.|++.|.+++....... ..+.++.+.++.+.+ ++||++.|||++.+|+.+++.+||++|++|+.++..
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLL-EGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCc-CCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 46688999999999998764211111 235678888888766 799999999999999999988999999999999864
No 127
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.56 E-value=1.7e-06 Score=75.32 Aligned_cols=94 Identities=21% Similarity=0.211 Sum_probs=67.9
Q ss_pred HHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCC--CCcchHHHHHHHHHHccCCCeEEEecCCCCHHH
Q 021739 158 KWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 234 (308)
Q Consensus 158 ~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 234 (308)
+.+|+.. +..|.+ .+.+.+++..+.+.|+|++.++....+... ..+..+..+.++.+.+ ++||++.||| ++++
T Consensus 87 ~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~~ 162 (201)
T PRK07695 87 RSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPEN 162 (201)
T ss_pred HHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHHH
Confidence 4445443 344554 356788999999999999976432222111 1123466777776655 6999999999 8999
Q ss_pred HHHHHHcCCCEEEEchHHHHh
Q 021739 235 VFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 235 ~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+.+++.+||++|++++.+..+
T Consensus 163 ~~~~~~~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 163 TRDVLAAGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHcCCCEEEEEHHHhcC
Confidence 999999999999999999863
No 128
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.56 E-value=1e-06 Score=78.30 Aligned_cols=76 Identities=25% Similarity=0.282 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+.++.+.+.|++.+.+......+...+ +.++.+.++.+.. ++|++++|||++.+|+.+++..||++|++||.++.+
T Consensus 150 ~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 150 ELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 567889999999999875432222233 5688888888765 799999999999999999999999999999999874
No 129
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=8e-07 Score=76.89 Aligned_cols=166 Identities=19% Similarity=0.150 Sum_probs=112.7
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
..+.+....+++.+-+.|++.|.|++.+|....-.+.++..|. ...+..+++. +..+++.....+++..++| .
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL--~~~q~~~a~~aGa~fiVsP----~ 93 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVL--NPEQARQAIAAGAQFIVSP----G 93 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEcccccc--CHHHHHHHHHcCCCEEECC----C
Confidence 6788999999999999999999999999988777778877764 1123222221 1111111222344555544 4
Q ss_pred cCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 152 LNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 152 ~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
++-+.++... ..++|++ -++.|+.++..+.++|++.+.++-... .+++ ..+..+ +.....++++.+|||+
T Consensus 94 ~~~ev~~~a~-~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~---~~~ka~-~gP~~~v~~~pTGGVs- 163 (211)
T COG0800 94 LNPEVAKAAN-RYGIPYI-PGVATPTEIMAALELGASALKFFPAEV---VGGP---AMLKAL-AGPFPQVRFCPTGGVS- 163 (211)
T ss_pred CCHHHHHHHH-hCCCccc-CCCCCHHHHHHHHHcChhheeecCccc---cCcH---HHHHHH-cCCCCCCeEeecCCCC-
Confidence 4445555544 4688876 467899999999999999999875321 1122 222221 1222469999999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 021739 232 GTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 232 ~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
..++.+++++|+.+|++|+.+..
T Consensus 164 ~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 164 LDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred HHHHHHHHhCCceEEecCccccC
Confidence 56999999999999999987764
No 130
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.54 E-value=2.4e-06 Score=75.54 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHcCCcEEEEeccc-ccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 021739 173 VLTAEDASLAIQYGAAGIIVSNHG-ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 173 ~~~~e~a~~~~~~G~d~i~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
..++..++++.++|+++|.-.+.. |+. .+..+.+.|..+++.. ++|||++|||.+++|+.+++++|||+|++|++
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~SA 206 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 468999999999999999542211 111 2445677788777664 79999999999999999999999999999999
Q ss_pred HHH
Q 021739 252 VPF 254 (308)
Q Consensus 252 ~l~ 254 (308)
+..
T Consensus 207 It~ 209 (248)
T cd04728 207 IAK 209 (248)
T ss_pred hcC
Confidence 875
No 131
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.54 E-value=5.6e-07 Score=85.05 Aligned_cols=97 Identities=21% Similarity=0.303 Sum_probs=74.4
Q ss_pred cccccCHHHHHHHHHhcCCCEEEEecCC----HHHHHHHHHcCCcEEEEecccccCCC-CCcchHHHHHHHHHHccCCCe
Q 021739 148 IDRSLNWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIVSNHGARQLD-YVPATVMALEEVVQAAKGRVP 222 (308)
Q Consensus 148 ~d~~~~~~~i~~ir~~~~~Pv~vK~~~~----~e~a~~~~~~G~d~i~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ip 222 (308)
.+++...+.++++|+.. +.+|...+ .+.++.+.++|+|.|.++++...+.+ ++...+..+.++.+.+ ++|
T Consensus 116 ~~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IP 190 (369)
T TIGR01304 116 LKPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVP 190 (369)
T ss_pred cChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCC
Confidence 45666677788888853 78888754 36789999999999999876433322 2223466677776665 799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
||+ |++.+.+|+.+++.+|||+|++|+
T Consensus 191 VI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 191 VIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 998 999999999999999999999886
No 132
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.52 E-value=3.1e-06 Score=74.90 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHcCCcEEEEeccc-ccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 021739 173 VLTAEDASLAIQYGAAGIIVSNHG-ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 173 ~~~~e~a~~~~~~G~d~i~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
..+++.++++.++|+++|--.+.. |+. .+..+.+.+..+.+.. ++|||++|||.+++|+.+++++|||+|+++++
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIGsg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~SA 206 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIGSG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 468999999999999999542211 111 2344567777777654 79999999999999999999999999999999
Q ss_pred HHH
Q 021739 252 VPF 254 (308)
Q Consensus 252 ~l~ 254 (308)
+..
T Consensus 207 Itk 209 (250)
T PRK00208 207 IAV 209 (250)
T ss_pred hhC
Confidence 875
No 133
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.52 E-value=2.5e-07 Score=79.94 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=104.7
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCC-ccccccccccccccCCCCCCchhhhHhhhhccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDR 150 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 150 (308)
..+.+...++++.+.+.|++.+.|++.+|-.-.-.+.++..| |. .+..+++.. ....+.....+++..++ |
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~~vGAGTV~~--~e~a~~a~~aGA~FivS----P 87 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PDLLVGAGTVLT--AEQAEAAIAAGAQFIVS----P 87 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TTSEEEEES--S--HHHHHHHHHHT-SEEEE----S
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CCCeeEEEeccC--HHHHHHHHHcCCCEEEC----C
Confidence 677888899999999999999999999885433456666665 32 233333221 11111111123333443 3
Q ss_pred ccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCC
Q 021739 151 SLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 230 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (308)
.++.+.++..++ .++|++ -++.|+.++..+.++|++.+.++-.+- .+| ...++.++.-+ ++++++.+|||.
T Consensus 88 ~~~~~v~~~~~~-~~i~~i-PG~~TptEi~~A~~~G~~~vK~FPA~~---~GG---~~~ik~l~~p~-p~~~~~ptGGV~ 158 (196)
T PF01081_consen 88 GFDPEVIEYARE-YGIPYI-PGVMTPTEIMQALEAGADIVKLFPAGA---LGG---PSYIKALRGPF-PDLPFMPTGGVN 158 (196)
T ss_dssp S--HHHHHHHHH-HTSEEE-EEESSHHHHHHHHHTT-SEEEETTTTT---TTH---HHHHHHHHTTT-TT-EEEEBSS--
T ss_pred CCCHHHHHHHHH-cCCccc-CCcCCHHHHHHHHHCCCCEEEEecchh---cCc---HHHHHHHhccC-CCCeEEEcCCCC
Confidence 444566666654 588876 467899999999999999999975421 112 34444443322 479999999998
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 231 RGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
.+++.+++.+|+.+|++|+.+...
T Consensus 159 -~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 159 -PDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp -TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred -HHHHHHHHhCCCEEEEECchhcCH
Confidence 589999999999999999987753
No 134
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.50 E-value=7.8e-06 Score=71.27 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 207 VMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 207 ~~~l~~i~~~~~---~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+.+.++++... ..+|+++.|||+ .+++.+++..|||.+.+||+++.
T Consensus 149 ~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 149 LEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred HHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 344455544332 237999999996 79999999999999999999874
No 135
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.49 E-value=2.3e-06 Score=76.27 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEeccc----------------c-------------------
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHG----------------A------------------- 197 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~g----------------g------------------- 197 (308)
.+.++.+++.+++||..|.. .++.+...+..+|+|+|-+...- |
T Consensus 96 ~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ 175 (254)
T COG0134 96 FEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKL 175 (254)
T ss_pred HHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhC
Confidence 57888888888999999974 56666666666777766543200 0
Q ss_pred ---------cCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 198 ---------RQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 198 ---------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
|.+..-..+.+...++....+....+|+.+||++++|+.+....|||++.||+.+|..
T Consensus 176 ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 176 GAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred CCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 0111111223334455555555688999999999999999999999999999999975
No 136
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.49 E-value=6.7e-06 Score=73.47 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEeccc----------------c-------------------
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHG----------------A------------------- 197 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~g----------------g------------------- 197 (308)
++.++.+++.+++||+.|.. .++.+...+..+|||+|.+...- |
T Consensus 91 ~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ 170 (247)
T PRK13957 91 LEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDC 170 (247)
T ss_pred HHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhC
Confidence 57889999989999999975 68888888888999999875311 0
Q ss_pred ---------cCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 198 ---------RQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 198 ---------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+.+.....+.....++...++....+|+.+||+|++|+.++... +|+|.+|+.++.+
T Consensus 171 ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 171 GAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred CCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 00111112233345555556567889999999999999987766 9999999999975
No 137
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.46 E-value=2.7e-06 Score=75.95 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=77.6
Q ss_pred CHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEecc---------------ccc---------------CC-
Q 021739 153 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNH---------------GAR---------------QL- 200 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~---------------gg~---------------~~- 200 (308)
..+.|+++.+.+++||.+.+. .+.|+++++.++|++.+++... +.. .|
T Consensus 64 n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~ 143 (234)
T PRK13587 64 EFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWE 143 (234)
T ss_pred hHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCc
Confidence 467899999888999999865 6899999999999999987431 000 00
Q ss_pred ---------------------------C--C--CcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 201 ---------------------------D--Y--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 201 ---------------------------~--~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+ + ..+.++.+.++.+.. ++|++++|||++.+|+.+++.+|+++|.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 144 EDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 0 0 013455566665544 799999999999999999999999999999
Q ss_pred hHHHH
Q 021739 250 RPVPF 254 (308)
Q Consensus 250 ~~~l~ 254 (308)
+++..
T Consensus 222 ~a~~~ 226 (234)
T PRK13587 222 KAAHQ 226 (234)
T ss_pred HHHHh
Confidence 99875
No 138
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.46 E-value=4.4e-06 Score=72.81 Aligned_cols=117 Identities=23% Similarity=0.314 Sum_probs=85.1
Q ss_pred CHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEec-------------------------------------
Q 021739 153 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSN------------------------------------- 194 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~------------------------------------- 194 (308)
.++.++++.+.+.+|+.+.+. .+.++++++..+|||-|.+-.
T Consensus 62 ~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~ 141 (256)
T COG0107 62 MLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGW 141 (256)
T ss_pred HHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCc
Confidence 357788888889999999864 689999999999999998721
Q ss_pred -----ccccC---CC----------------------C-C---cchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH
Q 021739 195 -----HGARQ---LD----------------------Y-V---PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 240 (308)
Q Consensus 195 -----~gg~~---~~----------------------~-~---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~ 240 (308)
+||+. ++ . | --+.+.+..+++.+ ++|||+|||..+++|..+++.
T Consensus 142 ~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~ 219 (256)
T COG0107 142 YEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFT 219 (256)
T ss_pred EEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHH
Confidence 01110 00 0 0 01344555665555 899999999999999999999
Q ss_pred cC-CCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 021739 241 LG-ASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGC 284 (308)
Q Consensus 241 ~G-Ad~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~m~~~G~ 284 (308)
.| ||++..++-|.+.. .-+.+++.+|...|.
T Consensus 220 ~~~adAaLAAsiFH~~~-------------~~i~evK~yL~~~gi 251 (256)
T COG0107 220 EGKADAALAASIFHFGE-------------ITIGEVKEYLAEQGI 251 (256)
T ss_pred hcCccHHHhhhhhhcCc-------------ccHHHHHHHHHHcCC
Confidence 87 99999998887741 223566666776665
No 139
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.44 E-value=3.9e-06 Score=73.13 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=73.7
Q ss_pred cccccCHHHHHHHHHhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHcc
Q 021739 148 IDRSLNWKDVKWLQTITSLPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK 218 (308)
Q Consensus 148 ~d~~~~~~~i~~ir~~~~~Pv~vK~~-----~~~e~----a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 218 (308)
++.+...++|+.+++.++-++.+|.+ ++.++ .+.+.++|+|+|.-|.+. ..+..+.+.+.-.++.++
T Consensus 106 g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf----~~~gAT~edv~lM~~~vg 181 (228)
T COG0274 106 GNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGF----SAGGATVEDVKLMKETVG 181 (228)
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhc
Confidence 45556678899999988655778865 34333 467789999999976432 234456666665666666
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 219 GRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 219 ~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
.++.|=++|||||.+|+.+++.+||+-++..+
T Consensus 182 ~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 182 GRVGVKASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred cCceeeccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 78999999999999999999999987776555
No 140
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.42 E-value=2.9e-05 Score=66.61 Aligned_cols=174 Identities=20% Similarity=0.109 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccC-C-C-CceEEeeecCC----chHHHHHHHHHHHcCCcEEEEecC
Q 021739 26 HPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-P-G-IRFFQLYVTKH----RNVDAQLVKRAERAGFKAIALTVD 98 (308)
Q Consensus 26 ~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~-~-~-~~~~Ql~~~~d----~~~~~~~~~~~~~~g~~~i~i~~~ 98 (308)
+.+.-..+.+.+.+.|+...+... ..++.+.+.. . . +.++++. ... .+...+.++++.+.|++++.+..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~-~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~- 86 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVG-FPTGLTTTEVKVAEVEEAIDLGADEIDVVI- 86 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEec-CCCCCCcHHHHHHHHHHHHHcCCCEEEEec-
Confidence 444456788888888987655433 2233333222 2 2 4566665 333 56777788889999999988753
Q ss_pred CCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHh--cCCCEEEEecC--
Q 021739 99 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTI--TSLPILVKGVL-- 174 (308)
Q Consensus 99 ~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~--~~~Pv~vK~~~-- 174 (308)
|.. ..+..+.+...+.++++++. .++|+++....
T Consensus 87 -~~~-----------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~ 124 (201)
T cd00945 87 -NIG-----------------------------------------SLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRG 124 (201)
T ss_pred -cHH-----------------------------------------HHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCC
Confidence 210 00000122335677888887 48999998862
Q ss_pred --CHHHH----HHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021739 175 --TAEDA----SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 175 --~~e~a----~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 248 (308)
+++.. +.+.+.|+|+|..+.... .+..++..+.++++..+.++|+++.||+.+.+++..++.+||+++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~ 200 (201)
T cd00945 125 LKTADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGT 200 (201)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeec
Confidence 44443 345689999998764211 11224566666666654468999999999999999999999999987
Q ss_pred c
Q 021739 249 G 249 (308)
Q Consensus 249 g 249 (308)
|
T Consensus 201 g 201 (201)
T cd00945 201 S 201 (201)
T ss_pred C
Confidence 5
No 141
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.39 E-value=9.1e-06 Score=82.59 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEeccc----------------c-------------------
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHG----------------A------------------- 197 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~g----------------g------------------- 197 (308)
++.++.+|+.+++||+.|.. .++.++..+..+|||+|.+...- |
T Consensus 100 ~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ 179 (695)
T PRK13802 100 LDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAA 179 (695)
T ss_pred HHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhC
Confidence 57888999989999999974 67888888888888888875310 0
Q ss_pred ---------cCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 198 ---------RQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 198 ---------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
|.+.....+.....++.+.++.++.+|+.+||++++|+..+..+|||+|.||+.++.+
T Consensus 180 ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 180 GAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred CCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 0011111223334455555555788999999999999999999999999999999864
No 142
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.37 E-value=2.1e-06 Score=81.32 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=72.8
Q ss_pred cccccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEecccccCCCCCcc-hHHHHHHHHHHccCCCeEE
Q 021739 148 IDRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVF 224 (308)
Q Consensus 148 ~d~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi 224 (308)
++|+...+.++++++. .+++.++.. ...+.++.+.++|+|.|.++++...+.+.+.. .+..+.++.+.. ++|||
T Consensus 115 ~~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVI 191 (368)
T PRK08649 115 IKPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVI 191 (368)
T ss_pred CCHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEE
Confidence 4566667788888885 455544442 23577899999999999997754333332222 455566665554 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 225 LDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 225 a~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
+ |+|.|.+++.+++.+|||+|++|+
T Consensus 192 a-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 192 V-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred E-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 9 999999999999999999999996
No 143
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.36 E-value=4.4e-06 Score=75.38 Aligned_cols=77 Identities=21% Similarity=0.225 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH-cCCCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA-LGASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~-~GAd~V~ig~~~l~ 254 (308)
.+.++.+.+.|++.+.++.........+ ..++.+.++.+.+ ++|||++|||++.+|+.+++. .||++|++|+.+.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 3567889999999998866432111123 3678888887765 799999999999999999997 49999999999987
Q ss_pred h
Q 021739 255 S 255 (308)
Q Consensus 255 ~ 255 (308)
+
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 4
No 144
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.36 E-value=1.4e-05 Score=70.18 Aligned_cols=171 Identities=16% Similarity=0.102 Sum_probs=108.6
Q ss_pred eEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhh
Q 021739 66 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVA 145 (308)
Q Consensus 66 ~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (308)
.+-+....+.+...++++.+.+.|++.+.|++..|..-.-.+.++..|.. ..+..+++- +....+.....+++..++
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~-~~IGAGTVl--~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPE-ALIGAGTVL--NPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCC-CEEEEeecc--CHHHHHHHHHcCCCEEEC
Confidence 33444477899999999999999999999999888533346777766631 123222221 111111111223333443
Q ss_pred hhcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEE
Q 021739 146 NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 225 (308)
Q Consensus 146 ~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (308)
|.++.+.++..++ .++|++ -++.|+.++..+.++|+|.+.++-.+- . ++ ...++.++.-+ +.++++.
T Consensus 94 ----P~~~~~vi~~a~~-~~i~~i-PG~~TptEi~~a~~~Ga~~vKlFPa~~--~-gg---~~~lk~l~~p~-p~~~~~p 160 (212)
T PRK05718 94 ----PGLTPPLLKAAQE-GPIPLI-PGVSTPSELMLGMELGLRTFKFFPAEA--S-GG---VKMLKALAGPF-PDVRFCP 160 (212)
T ss_pred ----CCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEEccchh--c-cC---HHHHHHHhccC-CCCeEEE
Confidence 3444566666654 677776 356899899999999999999964220 0 12 33444444333 4699999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 226 DGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 226 ~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+|||. .+++.+++.+|+..++. +.+++
T Consensus 161 tGGV~-~~ni~~~l~ag~v~~vg-gs~L~ 187 (212)
T PRK05718 161 TGGIS-PANYRDYLALPNVLCIG-GSWMV 187 (212)
T ss_pred eCCCC-HHHHHHHHhCCCEEEEE-ChHhC
Confidence 99998 59999999999555554 45553
No 145
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.34 E-value=3.5e-06 Score=76.12 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~ 254 (308)
.+.++.+.++|+|.|.++.... ......+.++.+.++++.+ ++|||++|||++.+|+.+++..| ||+|++|+.+..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 3567899999999999965321 1112335677888887765 79999999999999999999988 999999999876
Q ss_pred h
Q 021739 255 S 255 (308)
Q Consensus 255 ~ 255 (308)
+
T Consensus 235 ~ 235 (254)
T TIGR00735 235 R 235 (254)
T ss_pred C
Confidence 4
No 146
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.33 E-value=8e-06 Score=72.64 Aligned_cols=100 Identities=27% Similarity=0.410 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEecc---------------c------------c-c----CC
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNH---------------G------------A-R----QL 200 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~---------------g------------g-~----~~ 200 (308)
++.|+++.+.+++|+.+.+. .+.++++.+.+.|++.++++.. | + . .+
T Consensus 62 ~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw 141 (229)
T PF00977_consen 62 LELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGW 141 (229)
T ss_dssp HHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTT
T ss_pred HHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCc
Confidence 57889999999999999865 6899999999999999988530 0 1 0 00
Q ss_pred ------------------------------C--CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021739 201 ------------------------------D--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 201 ------------------------------~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 248 (308)
+ ..-+.++.+.++++.. ++|+|++|||++.+|+.++...|+++|.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 142 QESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp TEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 0 0124567777777666 89999999999999999999999999999
Q ss_pred chHHHHh
Q 021739 249 GRPVPFS 255 (308)
Q Consensus 249 g~~~l~~ 255 (308)
|++|..+
T Consensus 220 g~al~~g 226 (229)
T PF00977_consen 220 GSALHEG 226 (229)
T ss_dssp SHHHHTT
T ss_pred ehHhhCC
Confidence 9999753
No 147
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.31 E-value=5.1e-06 Score=72.74 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHcCCcEEEEeccc-ccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 021739 173 VLTAEDASLAIQYGAAGIIVSNHG-ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 173 ~~~~e~a~~~~~~G~d~i~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
..++..++++.++|+..|.--+.. |+. .|..+...|..+.+.. ++|||.++||.++.|+.+++++|||+|.+-++
T Consensus 131 ~~D~v~akrL~d~GcaavMPlgsPIGSg--~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 131 TDDPVLAKRLEDAGCAAVMPLGSPIGSG--RGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp -S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred CCCHHHHHHHHHCCCCEEEecccccccC--cCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 467888999999999999765432 111 2455677788887776 89999999999999999999999999999998
Q ss_pred HHHh
Q 021739 252 VPFS 255 (308)
Q Consensus 252 ~l~~ 255 (308)
+..+
T Consensus 207 iA~A 210 (247)
T PF05690_consen 207 IAKA 210 (247)
T ss_dssp HHTS
T ss_pred Hhcc
Confidence 8653
No 148
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.30 E-value=7.5e-06 Score=73.34 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+.++.+.++|+|.+.+.+..+. ....++.+..+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITAS-SEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCcc-cccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 36688899999999988764421 122345677888888776 69999999999999999999999999999998875
No 149
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.29 E-value=1.6e-05 Score=69.63 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=66.9
Q ss_pred cccCHHHHHHHHHhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCC
Q 021739 150 RSLNWKDVKWLQTITSLPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGR 220 (308)
Q Consensus 150 ~~~~~~~i~~ir~~~~~Pv~vK~~-----~~~e~----a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ 220 (308)
.+...++++++++..+ .+.+|.+ ++.++ ++.+.++|+|+|..+.+.. .+..+...+..+++.++++
T Consensus 101 ~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~gat~~dv~~m~~~v~~~ 175 (211)
T TIGR00126 101 EEVVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGGATVEDVRLMRNTVGDT 175 (211)
T ss_pred HHHHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHhccC
Confidence 3444678888888763 3334443 34333 5677899999999764211 1234555555555666668
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 221 VPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 221 ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
++|-++|||++.+|+.+++.+||+.++..+
T Consensus 176 v~IKaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 176 IGVKASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred CeEEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 999999999999999999999999876543
No 150
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.26 E-value=1e-05 Score=72.94 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
.+.++.+.+.|++.+.+....+... .....++.++++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++..
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~-~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~ 109 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSE-GRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVAN 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccc-cCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence 3678888899999999987543221 2356788888888776 799999999999999999999999999999988763
No 151
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.25 E-value=1.8e-05 Score=73.54 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=71.3
Q ss_pred CHHHHHHHHHh-cCCCEEEEec-CCHHHHHHHHHcCCcEEEEeccc----------------c-----------------
Q 021739 153 NWKDVKWLQTI-TSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHG----------------A----------------- 197 (308)
Q Consensus 153 ~~~~i~~ir~~-~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~g----------------g----------------- 197 (308)
+++.++.+|+. +++||+.|.. .++.+...+..+|||+|.+...- |
T Consensus 168 s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl 247 (338)
T PLN02460 168 SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVL 247 (338)
T ss_pred CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 47889999997 8999999974 67777777777777777653210 0
Q ss_pred ------------cCCCCCcchHHHHHHHHH-----Hc-cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 198 ------------RQLDYVPATVMALEEVVQ-----AA-KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 198 ------------~~~~~~~~~~~~l~~i~~-----~~-~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+.+..-..+.....++.. .+ ..++.+++.+||+|++|+..+..+|||+|.||..++..
T Consensus 248 ~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 248 GIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred hcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 001111112222333333 22 13466899999999999999999999999999999974
No 152
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.24 E-value=8.6e-05 Score=65.62 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=91.1
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
..|...+.+.++++++.|++.+=+.+ . + +.++ .+-.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~lH~Dv----m----------------------D---------------G~Fv---pn~t 43 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVVHFDV----M----------------------D---------------NHYV---PNLT 43 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEec----c----------------------c---------------Cccc---Cccc
Confidence 45777788889999999999864432 0 0 0011 0112
Q ss_pred cCHHHHHHHHHh-cCCCEEEEec-CCHH-HHHHHHHcCCcEEEEecc---------------c---c------cC-----
Q 021739 152 LNWKDVKWLQTI-TSLPILVKGV-LTAE-DASLAIQYGAAGIIVSNH---------------G---A------RQ----- 199 (308)
Q Consensus 152 ~~~~~i~~ir~~-~~~Pv~vK~~-~~~e-~a~~~~~~G~d~i~v~~~---------------g---g------~~----- 199 (308)
+..+.++++|+. +++|+=+-+- .+++ ....+.++|+|.|+++-. | | +.
T Consensus 44 fg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 44 FGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred cCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 345788999987 5888766643 4454 477888999999988641 0 0 10
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHcc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 200 -----LD-----------YV----PATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 200 -----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+ ++ +...+-+.++++... .++||.++|||. .+++.+..++|||.+.+||.++.
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFG 200 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 00 11 223445555554432 148999999999 89999999999999999999764
No 153
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.23 E-value=2.9e-05 Score=67.79 Aligned_cols=79 Identities=27% Similarity=0.307 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHcCCcEEEEecccccCCC---CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 174 LTAEDASLAIQYGAAGIIVSNHGARQLD---YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 174 ~~~e~a~~~~~~G~d~i~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
.+.+++..+.+.|+|+|.++...-+... .....++.+.++++.. ..+||++.||| +.+++.+++.+||++|.+|+
T Consensus 112 ~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 112 HTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeH
Confidence 5778899999999999987642111111 1112367777777665 24999999999 69999999999999999999
Q ss_pred HHHH
Q 021739 251 PVPF 254 (308)
Q Consensus 251 ~~l~ 254 (308)
.+..
T Consensus 190 ~i~~ 193 (212)
T PRK00043 190 AITG 193 (212)
T ss_pred Hhhc
Confidence 8764
No 154
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.23 E-value=0.0001 Score=63.92 Aligned_cols=95 Identities=22% Similarity=0.134 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCCEEE--EecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHH
Q 021739 156 DVKWLQTITSLPILV--KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 233 (308)
Q Consensus 156 ~i~~ir~~~~~Pv~v--K~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (308)
.++.+++ .++++++ =...++++...+.+.|+|++.+......+..+.....+.+.++.+. .++|++++|||+ ++
T Consensus 95 ~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~GGI~-~~ 170 (202)
T cd04726 95 AVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL--LGVKVAVAGGIT-PD 170 (202)
T ss_pred HHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh--cCCCEEEECCcC-HH
Confidence 4555554 4677765 3456788887888899999987421101111123445666666544 379999999996 99
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 021739 234 DVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 234 d~~k~l~~GAd~V~ig~~~l~ 254 (308)
++.+++..|||.+.+||+++.
T Consensus 171 ~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 171 TLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHHHHhcCCCEEEEeehhcC
Confidence 999999999999999999764
No 155
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.22 E-value=8e-06 Score=72.31 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHcCCcEEEEeccc-ccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 021739 173 VLTAEDASLAIQYGAAGIIVSNHG-ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 173 ~~~~e~a~~~~~~G~d~i~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
..++..++++.++|+..|.--+.. |+. .|..+...|..+.+.. ++||+.++||.+++|+.+++++|||+|.+.++
T Consensus 145 ~~D~v~a~rLed~Gc~aVMPlgsPIGSg--~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nSa 220 (267)
T CHL00162 145 NADPMLAKHLEDIGCATVMPLGSPIGSG--QGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNTA 220 (267)
T ss_pred CCCHHHHHHHHHcCCeEEeeccCcccCC--CCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeecce
Confidence 356888999999999999754431 111 2445667777776654 79999999999999999999999999999999
Q ss_pred HHHh
Q 021739 252 VPFS 255 (308)
Q Consensus 252 ~l~~ 255 (308)
+..+
T Consensus 221 IakA 224 (267)
T CHL00162 221 VAQA 224 (267)
T ss_pred eecC
Confidence 8864
No 156
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.21 E-value=4.3e-05 Score=66.69 Aligned_cols=92 Identities=27% Similarity=0.278 Sum_probs=62.7
Q ss_pred cCHHHHHHHHHhcC-CCEEEEe---cCCHHH----HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeE
Q 021739 152 LNWKDVKWLQTITS-LPILVKG---VLTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 223 (308)
Q Consensus 152 ~~~~~i~~ir~~~~-~Pv~vK~---~~~~e~----a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (308)
...+.+.++++..+ +|+.+=. ..+.+. ++.+.++|+|+|..+.+. .....+...+..+.+.++.++||
T Consensus 102 ~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~----~~~~at~~~v~~~~~~~~~~v~i 177 (203)
T cd00959 102 AVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGF----GPGGATVEDVKLMKEAVGGRVGV 177 (203)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCCCceE
Confidence 34567888888764 5543311 144443 678899999999976221 11234455544444555457999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEE
Q 021739 224 FLDGGVRRGTDVFKALALGASGVF 247 (308)
Q Consensus 224 ia~GGI~~~~d~~k~l~~GAd~V~ 247 (308)
-++|||+|.+++++++.+||+.++
T Consensus 178 k~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 178 KAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred EEeCCCCCHHHHHHHHHhChhhcc
Confidence 999999999999999999998765
No 157
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.21 E-value=2.7e-05 Score=68.81 Aligned_cols=100 Identities=29% Similarity=0.414 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEec---------------cccc---------------CC--
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSN---------------HGAR---------------QL-- 200 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~---------------~gg~---------------~~-- 200 (308)
.+.++++.+.++.||=+.+. -+.+.++.+.++|++.++++. +|++ .|
T Consensus 64 ~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e 143 (241)
T COG0106 64 LEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQE 143 (241)
T ss_pred HHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccc
Confidence 46789999989999988864 678889999999999998753 1110 00
Q ss_pred ----------------------------CC--CcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHc-CCCEEEEc
Q 021739 201 ----------------------------DY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL-GASGVFVG 249 (308)
Q Consensus 201 ----------------------------~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~-GAd~V~ig 249 (308)
++ .-+.++.+.++.+.+ ++|++++|||++-+|+..+..+ |++.|.+|
T Consensus 144 ~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG 221 (241)
T COG0106 144 DSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIVG 221 (241)
T ss_pred cccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEEe
Confidence 00 124677788888777 8999999999999999988888 89999999
Q ss_pred hHHHHh
Q 021739 250 RPVPFS 255 (308)
Q Consensus 250 ~~~l~~ 255 (308)
|+++.+
T Consensus 222 ~ALy~g 227 (241)
T COG0106 222 RALYEG 227 (241)
T ss_pred hHHhcC
Confidence 999864
No 158
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.21 E-value=1.8e-05 Score=71.51 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+.++.+.+.|+|.+.+.+..+.. ......++.+.++++.+ ++||+++|||++.+|+.+++.+||+.|.+|+.++..
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~-~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~ 109 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASS-EGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKN 109 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCccc-ccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence 66888889999999998754321 12345677888888776 799999999999999999999999999999988753
No 159
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.18 E-value=3.2e-05 Score=69.00 Aligned_cols=101 Identities=30% Similarity=0.343 Sum_probs=75.7
Q ss_pred CHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEeccc-------------ccC-----CC--C---------
Q 021739 153 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHG-------------ARQ-----LD--Y--------- 202 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~g-------------g~~-----~~--~--------- 202 (308)
..+.++++.+.+.+|+.+.+. .+.|+++.+.++|++.+++.... +.+ +| .
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~ 145 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDF 145 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCc
Confidence 357889998888899998865 67899999999999999874311 000 00 0
Q ss_pred ----------------------------CcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 203 ----------------------------VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 203 ----------------------------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
..+..+.+.++.+.. .+|++++|||++.+|+.+++.+||+.|.+|+++..
T Consensus 146 ~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 146 IGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred CCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 012234444444443 79999999999999999999999999999999886
Q ss_pred h
Q 021739 255 S 255 (308)
Q Consensus 255 ~ 255 (308)
+
T Consensus 224 g 224 (233)
T cd04723 224 G 224 (233)
T ss_pred C
Confidence 4
No 160
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.18 E-value=1.2e-05 Score=78.24 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=88.3
Q ss_pred CHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEeccc----------------c------------------
Q 021739 153 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHG----------------A------------------ 197 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~g----------------g------------------ 197 (308)
+++.++.+|+.+++||+.|.. .++.+...+..+|||+|.+...- |
T Consensus 98 s~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~ 177 (454)
T PRK09427 98 SFDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIA 177 (454)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHh
Confidence 468899999999999999975 67788888888888888764310 0
Q ss_pred ----------cCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHH
Q 021739 198 ----------RQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKV 267 (308)
Q Consensus 198 ----------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~ 267 (308)
+.+.....+...-.++...++.++.+|+.+||+|++|+..+ ..|||+|.+|+.++.+ ..+ .+.
T Consensus 178 ~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~---~d~---~~~ 250 (454)
T PRK09427 178 LGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAE---DDL---ELA 250 (454)
T ss_pred CCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCC---CCH---HHH
Confidence 00111112233334455555567889999999999999886 4589999999999975 222 223
Q ss_pred HHHHHHHHHHHHHHcCCCCHhhhc
Q 021739 268 LQMLRDEFELTMALSGCRSLKEIT 291 (308)
Q Consensus 268 i~~l~~~l~~~m~~~G~~~i~~l~ 291 (308)
+..+.. .....||.++..+.+
T Consensus 251 ~~~L~~---~~vKICGit~~eda~ 271 (454)
T PRK09427 251 VRKLIL---GENKVCGLTRPQDAK 271 (454)
T ss_pred HHHHhc---cccccCCCCCHHHHH
Confidence 333322 346779988877765
No 161
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.14 E-value=0.0001 Score=64.22 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCCEEEEec--CC-HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 155 KDVKWLQTITSLPILVKGV--LT-AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~--~~-~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
+.++.+++ .++++++-.. .+ .+.++.+.+.|+|++.+......+ ...+.....+.++++.+. .+++.++||| +
T Consensus 93 ~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~-~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~ 168 (206)
T TIGR03128 93 GAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQ-AKGQNPFEDLQTILKLVK-EARVAVAGGI-N 168 (206)
T ss_pred HHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcc-cCCCCCHHHHHHHHHhcC-CCcEEEECCc-C
Confidence 34555554 5888887642 22 478888899999999875321111 122344566666665543 4677779999 7
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 021739 232 GTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 232 ~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+++.+++..||+.+.+||.++.
T Consensus 169 ~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 169 LDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred HHHHHHHHHcCCCEEEEeehhcC
Confidence 89999999999999999999764
No 162
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.12 E-value=4.2e-05 Score=69.59 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHcc---CCCeEEEecC
Q 021739 154 WKDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGG 228 (308)
Q Consensus 154 ~~~i~~ir~~~~--~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GG 228 (308)
.+.++++|+..+ .+|.+ .+.+.|++..+.++|+|.|.+.|- +.+.+.++.+..+ .++.+.++||
T Consensus 169 ~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsGg 237 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASGN 237 (273)
T ss_pred HHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECC
Confidence 466888888764 34443 667999999999999999987652 4555655555432 3678999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 229 VRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
| |++.+.++..+|+|.+.+|++...
T Consensus 238 I-t~~ni~~ya~~GvD~IsvG~l~~s 262 (273)
T PRK05848 238 I-TLENINAYAKSGVDAISSGSLIHQ 262 (273)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhcC
Confidence 9 999999999999999999997653
No 163
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.08 E-value=0.00035 Score=62.11 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=98.1
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
..|+..+.+.++++++.|++.+ ++|. . + +.++ .+-.
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~--H~Di--m----------------------D---------------g~fv---pn~~ 50 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWL--HVDV--M----------------------D---------------GHFV---PNLS 50 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEec--c----------------------c---------------CccC---CCcC
Confidence 3577788899999999999875 4431 0 0 0011 0112
Q ss_pred cCHHHHHHHHHhc-CCCEEEEec-CCHH-HHHHHHHcCCcEEEEecccccC-----------------------------
Q 021739 152 LNWKDVKWLQTIT-SLPILVKGV-LTAE-DASLAIQYGAAGIIVSNHGARQ----------------------------- 199 (308)
Q Consensus 152 ~~~~~i~~ir~~~-~~Pv~vK~~-~~~e-~a~~~~~~G~d~i~v~~~gg~~----------------------------- 199 (308)
+..+.++++|+.+ ++|+-+|.- .+++ .++.+.++|+|.++++..+...
T Consensus 51 ~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 51 FGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVL 130 (228)
T ss_pred cCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHH
Confidence 2357899999887 899999976 4554 4688899999999987532100
Q ss_pred ---C-----------------CCC---cchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhc
Q 021739 200 ---L-----------------DYV---PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 256 (308)
Q Consensus 200 ---~-----------------~~~---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~ 256 (308)
. ++. +....-+.++++.. ..+.|.++|||+ .+.+..+..+|||.+.+||++..+
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~-~~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a- 207 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRY-PHLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKA- 207 (228)
T ss_pred HHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhc-ccCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCC-
Confidence 0 000 11123334443332 247899999998 578888899999999999996542
Q ss_pred ccCCHHHHHHHHHHHHHHHHH
Q 021739 257 AVDGEAGVRKVLQMLRDEFEL 277 (308)
Q Consensus 257 ~~~G~~~v~~~i~~l~~~l~~ 277 (308)
..+ .+.++.+++.++.
T Consensus 208 --~d~---~~~~~~i~~~~~~ 223 (228)
T PTZ00170 208 --KDR---KQAIELLRESVQK 223 (228)
T ss_pred --CCH---HHHHHHHHHHHHH
Confidence 222 3445555555544
No 164
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.05 E-value=5.6e-05 Score=67.73 Aligned_cols=100 Identities=22% Similarity=0.250 Sum_probs=74.1
Q ss_pred CHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEecc--------------c-----------c---------
Q 021739 153 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNH--------------G-----------A--------- 197 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~--------------g-----------g--------- 197 (308)
..+.++++.+.+ .|+.+.+. .+.++++.+.++|+|.+++... + |
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 357788888776 68888764 6789999999999998877430 0 0
Q ss_pred -cCC----------------------C--C--CcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHc-----C-CC
Q 021739 198 -RQL----------------------D--Y--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL-----G-AS 244 (308)
Q Consensus 198 -~~~----------------------~--~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~-----G-Ad 244 (308)
+.. + + .-+.++.+.++.+.. ++|||++||+++.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 000 0 0 124566677666554 7999999999999999999887 6 99
Q ss_pred EEEEchHHHHh
Q 021739 245 GVFVGRPVPFS 255 (308)
Q Consensus 245 ~V~ig~~~l~~ 255 (308)
+|.+|+++..+
T Consensus 219 gvivg~Al~~g 229 (241)
T PRK14114 219 GVIVGRAFLEG 229 (241)
T ss_pred EEEEehHHHCC
Confidence 99999998764
No 165
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.02 E-value=0.00025 Score=63.07 Aligned_cols=83 Identities=28% Similarity=0.419 Sum_probs=60.2
Q ss_pred HhcCCCEEEEecC---------CHHH----HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 162 TITSLPILVKGVL---------TAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 162 ~~~~~Pv~vK~~~---------~~e~----a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
+..++|+++=... +.+. ++.+.++|+|+|.++..+ ..+.+.++.+.. .+|+++.||
T Consensus 119 ~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG 187 (235)
T cd00958 119 HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGG 187 (235)
T ss_pred HHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCC
Confidence 4568898873322 2333 455889999999885321 356667776654 689999999
Q ss_pred C--CCHHH----HHHHHHcCCCEEEEchHHHHh
Q 021739 229 V--RRGTD----VFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 229 I--~~~~d----~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+ .|.+| +..++..||+.|.+||.++..
T Consensus 188 ~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~ 220 (235)
T cd00958 188 PKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQR 220 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEechhhhcC
Confidence 7 67766 777788999999999998864
No 166
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.99 E-value=0.00011 Score=62.74 Aligned_cols=78 Identities=24% Similarity=0.214 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHcCCcEEEEeccccc---CCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 174 LTAEDASLAIQYGAAGIIVSNHGAR---QLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 174 ~~~e~a~~~~~~G~d~i~v~~~gg~---~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
.+.+++..+.+.|+|+|.++...-+ +....+..++.+.++++.. ++||++.|||. .+++.+++.+||+++.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 5678899999999999988643111 1111234566777776553 79999999995 7999999999999999999
Q ss_pred HHHH
Q 021739 251 PVPF 254 (308)
Q Consensus 251 ~~l~ 254 (308)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 9775
No 167
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.99 E-value=0.00038 Score=60.54 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=31.7
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 220 RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 220 ~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
++|+++.|||+. +++.+++..|||.+.+||+++..
T Consensus 166 ~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 166 NLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred CeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCC
Confidence 489999999995 99999999999999999999853
No 168
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.98 E-value=3.2e-05 Score=80.35 Aligned_cols=151 Identities=26% Similarity=0.219 Sum_probs=107.7
Q ss_pred Hhhhhcccc-cCHHHHHHHHH----h-cCCCEEEEecCCH---HHHHHHHHcCCcEEEEeccc-ccC---CC----CCcc
Q 021739 143 YVANQIDRS-LNWKDVKWLQT----I-TSLPILVKGVLTA---EDASLAIQYGAAGIIVSNHG-ARQ---LD----YVPA 205 (308)
Q Consensus 143 ~~~~~~d~~-~~~~~i~~ir~----~-~~~Pv~vK~~~~~---e~a~~~~~~G~d~i~v~~~g-g~~---~~----~~~~ 205 (308)
+++|..+.+ ++.|.++++.- . ..-.|+||++... -.|.-++++.||.|.+++|. |+. |. .+.|
T Consensus 1070 LISPPPHHDIYSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlP 1149 (2142)
T KOG0399|consen 1070 LISPPPHHDIYSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLP 1149 (2142)
T ss_pred cCCCCCccccccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCC
Confidence 445444444 47777776642 2 2457999987432 23567778899999999984 432 21 1222
Q ss_pred hHHHHHHHHHH-----ccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccC---------------------
Q 021739 206 TVMALEEVVQA-----AKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD--------------------- 259 (308)
Q Consensus 206 ~~~~l~~i~~~-----~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~--------------------- 259 (308)
.---+.+..+. ++.++-+=.+|+++|+.|+.-|..+||+-.++++.-+.+++|-
T Consensus 1150 WELGlAEThQtLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~L 1229 (2142)
T KOG0399|consen 1150 WELGLAETHQTLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPEL 1229 (2142)
T ss_pred hhhcchhhhhHHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHH
Confidence 22224444432 3457889999999999999999999999999999666654331
Q ss_pred -----C-HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 260 -----G-EAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 260 -----G-~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
| ++.|.+++-.+.+|+|.+|..+|++.+.|+-+.
T Consensus 1230 RakF~G~PehvVNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1230 RAKFPGQPEHVVNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HhhCCCCcHHHHHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 3 467889999999999999999999999998665
No 169
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.98 E-value=0.00079 Score=59.11 Aligned_cols=175 Identities=17% Similarity=0.141 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHcCCceeecCCC------CC-C----HHHHhccCCCCceEEeeecCCchHHHHHHHHHHHcCCcEEEEec
Q 021739 29 GECATARAASAAGTIMTLSSWA------TS-S----VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTV 97 (308)
Q Consensus 29 ~~~~~a~~a~~~g~~~~~s~~~------~~-~----~e~i~~~~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~ 97 (308)
+|..-.+.+.+.|.--.+||.- .. . +++++...+++..+|++ ..|.+.+.+..+.+.+.+- .+.+-+
T Consensus 7 a~~~ei~~~~~~~~i~GvTTNPsll~k~~~~~~~~~~~~i~~~~~~~v~~qv~-~~~~e~~i~~a~~l~~~~~-~~~iKI 84 (211)
T cd00956 7 ADLEEIKKASETGLLDGVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVV-STDAEGMVAEARKLASLGG-NVVVKI 84 (211)
T ss_pred CCHHHHHHHHhcCCcCccccCHHHHHhcCCcCHHHHHHHHHHhcCCCEEEEEE-eCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 3556666677777655555541 11 2 23444444567889997 7777777777666655422 233332
Q ss_pred CCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCHH
Q 021739 98 DTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAE 177 (308)
Q Consensus 98 ~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e 177 (308)
|.. . ...+.++.+++. ++++.+-.+.+.+
T Consensus 85 --P~T------------------------------------~------------~gl~ai~~L~~~-gi~v~~T~V~s~~ 113 (211)
T cd00956 85 --PVT------------------------------------E------------DGLKAIKKLSEE-GIKTNVTAIFSAA 113 (211)
T ss_pred --cCc------------------------------------H------------hHHHHHHHHHHc-CCceeeEEecCHH
Confidence 221 0 013456667655 7888888899999
Q ss_pred HHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccC-CC-eEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 178 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG-RV-PVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 178 ~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~i-pvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
.+..+.++|+++|.. +-|+-.+.+......+.++.+.+.. +. .-|...|++++.++..++.+|||.|-+.-.++..
T Consensus 114 Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~ 191 (211)
T cd00956 114 QALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQ 191 (211)
T ss_pred HHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHH
Confidence 999999999999654 3333223333445555555544321 22 2334467999999999999999999999988887
Q ss_pred ccc
Q 021739 256 LAV 258 (308)
Q Consensus 256 ~~~ 258 (308)
+..
T Consensus 192 l~~ 194 (211)
T cd00956 192 LLK 194 (211)
T ss_pred Hhc
Confidence 643
No 170
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.98 E-value=5.1e-05 Score=67.39 Aligned_cols=76 Identities=29% Similarity=0.355 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+.++.+.+.|+|.+.+....+. .......+..+.++.+.+ .+|+++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 36688888999999999754321 112344677788887776 79999999999999999999999999999998764
No 171
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.97 E-value=0.00015 Score=64.43 Aligned_cols=102 Identities=25% Similarity=0.257 Sum_probs=72.5
Q ss_pred CHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEeccc-------------cc---------------CCC--
Q 021739 153 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHG-------------AR---------------QLD-- 201 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~~G~d~i~v~~~g-------------g~---------------~~~-- 201 (308)
..+.++++.+.+++||.+.+ +.+.++++.+.+.|++.+++.... +. .+.
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 35788888888899999875 478999999999999998874210 00 000
Q ss_pred CCcchHHHHHH------------------------HHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 202 YVPATVMALEE------------------------VVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 202 ~~~~~~~~l~~------------------------i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
......+.+.+ +.+.. .++|||++|||++.+|+.++...|+++|.+|++|..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 01111122221 11221 2699999999999999999999999999999998764
No 172
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.97 E-value=8.4e-05 Score=72.21 Aligned_cols=95 Identities=21% Similarity=0.189 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCCEEEEe-c-CC-HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 155 KDVKWLQTITSLPILVKG-V-LT-AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~-~-~~-~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
+.++.+++ .+.++++.. . .+ .+.++.+.+.|+|+|.++.....+ ...+...+.+.++++.+ ++||++.||| +
T Consensus 98 ~~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~-~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~ 172 (430)
T PRK07028 98 DAVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQ-MLGKDPLELLKEVSEEV--SIPIAVAGGL-D 172 (430)
T ss_pred HHHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchh-hcCCChHHHHHHHHhhC--CCcEEEECCC-C
Confidence 34555555 577777642 2 23 466788899999999765321111 11233456677776554 5999999999 6
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 021739 232 GTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 232 ~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+++.++++.||+.+.+||.++.
T Consensus 173 ~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 173 AETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHHcCCCEEEEChHHcC
Confidence 89999999999999999999875
No 173
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.95 E-value=0.0008 Score=59.55 Aligned_cols=98 Identities=27% Similarity=0.304 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEeccc--ccCCCCCcchHHHHHHHHHHc---cCCCeEEEecCCC
Q 021739 156 DVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHG--ARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVR 230 (308)
Q Consensus 156 ~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~g--g~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~ 230 (308)
.++..++ .++.+++ .+.+.++++.+.+.|.|+|-+-... |+.......+.+.+.++.+.+ ..++||++.|||+
T Consensus 106 ~v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~ 183 (223)
T PRK04302 106 VVERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 4444444 4554443 4466788888889999988764321 211110011122233322222 2368999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 231 RGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+++++..++..|||+|.+|+.++..
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhCC
Confidence 9999999999999999999999964
No 174
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.95 E-value=0.00013 Score=64.78 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.++.+.+.|+|.+.+..-.+.. .+..+..+.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~~-~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGAK-AGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 55788889999999987643221 12345677888887765 79999999999999999999999999999998875
No 175
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.92 E-value=0.00023 Score=62.90 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=66.5
Q ss_pred HHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEeccccc-CCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHH
Q 021739 157 VKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSNHGAR-QLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 233 (308)
Q Consensus 157 i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~~~gg~-~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (308)
+..+|+...--.++... .+.+++..+.+.|+|+|.++.-.-+ .....+...+.+.++.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 34555544322345542 4677888888999999988653211 1111223455666666554 7999999999 799
Q ss_pred HHHHHHHcCCCEEEEchHHHHh
Q 021739 234 DVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 234 d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
++.+++..||++|.+-|.++.+
T Consensus 177 n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhCC
Confidence 9999999999999999998853
No 176
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.90 E-value=0.00014 Score=65.21 Aligned_cols=74 Identities=28% Similarity=0.211 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.|+...+.|+|.+.+..-.+.. +.......+.++.+.+ .+|+.+.|||+|.+|+.+++.+||+.+.+|+.++.
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~~--g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAAF--GRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHCCCCEEEEEeccccC--CCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 56788889999999876533221 2345667888888776 79999999999999999999999999999998875
No 177
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.89 E-value=8.8e-05 Score=65.63 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=54.1
Q ss_pred HHHHHHHcCCcEEEEecc--cccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 178 DASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 178 ~a~~~~~~G~d~i~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
....+.+.|+ .+.+..- -|+ ...+.++.+.++.+.. ++|+|++|||++.+|+.++...||++|.+|+++..+
T Consensus 146 ~~~~~~~~g~-~ii~tdI~~dGt---~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 146 VRDFLNSFDY-GLIVLDIHSVGT---MKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHHHhcCC-EEEEEECCcccc---CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 3455667788 5554321 122 1234678888887765 799999999999999999888999999999998764
No 178
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.86 E-value=0.00029 Score=64.08 Aligned_cols=87 Identities=26% Similarity=0.327 Sum_probs=61.4
Q ss_pred HHHHHhcCCCEEEEe---------cCCHHH----HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEE
Q 021739 158 KWLQTITSLPILVKG---------VLTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 224 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~---------~~~~e~----a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 224 (308)
.++...+++|+++-. ..+.+. ++.+.+.|+|+|..+-. ...+.+.++.+.. ++||+
T Consensus 132 ~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~---------~~~~~l~~~~~~~--~ipV~ 200 (267)
T PRK07226 132 AEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYT---------GDPESFREVVEGC--PVPVV 200 (267)
T ss_pred HHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCC---------CCHHHHHHHHHhC--CCCEE
Confidence 333344689987731 123333 57788999999987521 1345666665543 69999
Q ss_pred EecCCC--CHHHHHHHH----HcCCCEEEEchHHHHh
Q 021739 225 LDGGVR--RGTDVFKAL----ALGASGVFVGRPVPFS 255 (308)
Q Consensus 225 a~GGI~--~~~d~~k~l----~~GAd~V~ig~~~l~~ 255 (308)
++|||+ |.+++.+.+ ++||+++.+||.++..
T Consensus 201 a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 201 IAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC
Confidence 999999 888777765 8999999999998864
No 179
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.86 E-value=0.00092 Score=59.39 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCCEEEEecC-C-HHHHHHHHHcC-CcEEEEec-ccccCC-CCCcchHHHHHHHHHHccCCCeEEEecCC
Q 021739 155 KDVKWLQTITSLPILVKGVL-T-AEDASLAIQYG-AAGIIVSN-HGARQL-DYVPATVMALEEVVQAAKGRVPVFLDGGV 229 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~-~-~e~a~~~~~~G-~d~i~v~~-~gg~~~-~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (308)
+.++++++. +.-+.+-... + .+.++...+.| +|+|.+.. +.+... ...+...+.+.++++.. .++||.+.|||
T Consensus 106 ~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI 183 (229)
T PLN02334 106 RLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV 183 (229)
T ss_pred HHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC
Confidence 456666653 3322222221 3 45566666664 99997643 222211 12233445566665543 35799999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHHHH
Q 021739 230 RRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELT 278 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~~~ 278 (308)
+.+++.+..++|||.+.+||+++.+ .. ..+.++.+++.++..
T Consensus 184 -~~e~i~~l~~aGad~vvvgsai~~~---~d---~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 184 -GPSTIDKAAEAGANVIVAGSAVFGA---PD---YAEVISGLRASVEKA 225 (229)
T ss_pred -CHHHHHHHHHcCCCEEEEChHHhCC---CC---HHHHHHHHHHHHHHh
Confidence 5999999999999999999997642 22 334555666655544
No 180
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.84 E-value=0.0025 Score=55.46 Aligned_cols=96 Identities=23% Similarity=0.217 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCCEEEEecC-CHHH--HHHHHHcCCcEEEEecccccCC--CCCcchHHHHHHHHHHccCCCeEEEecCC
Q 021739 155 KDVKWLQTITSLPILVKGVL-TAED--ASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGV 229 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~-~~e~--a~~~~~~G~d~i~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (308)
+.++.+++..+.+++..... +..+ .......|+|++.+........ .+.+..|+.+.++. .++|+++.|||
T Consensus 86 ~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~----~~~PvilaGGI 161 (203)
T cd00405 86 EYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA----SRKPVILAGGL 161 (203)
T ss_pred HHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc----cCCCEEEECCC
Confidence 46677777667777632322 2222 2345567999998754321111 12234667676554 36899999999
Q ss_pred CCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 230 RRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 230 ~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
|++++.+++..| +++|-+.|.+...
T Consensus 162 -~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 162 -TPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred -ChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 899999999998 9999999987653
No 181
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.83 E-value=0.00012 Score=63.87 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHcCCcEEEEeccc-ccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 021739 174 LTAEDASLAIQYGAAGIIVSNHG-ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 174 ~~~e~a~~~~~~G~d~i~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~ 252 (308)
-++-.+++++++|+..|.=-+.. |+. .|..+...|.-+.+.. ++|||.+-||.++.|+..++++|||+|.+-+++
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIGSg--~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIGSG--LGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred CCHHHHHHHHhcCceEeccccccccCC--cCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 46778999999999988632211 111 2445667777777766 899999999999999999999999999999987
Q ss_pred HHh
Q 021739 253 PFS 255 (308)
Q Consensus 253 l~~ 255 (308)
-.+
T Consensus 215 A~A 217 (262)
T COG2022 215 ARA 217 (262)
T ss_pred hcc
Confidence 653
No 182
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.81 E-value=0.0016 Score=56.48 Aligned_cols=169 Identities=21% Similarity=0.190 Sum_probs=99.6
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccc---ccccc---ccccccCCCCCCchhhhHhh
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLT---LKNYE---GLYIGKMDKTDDSGLASYVA 145 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~---~~~~~---~~~~~~~~~~~~~~~~~~~~ 145 (308)
..|.+...+.++.++..|++.++|-.| |- -.+..+.--.+|..|- +..+- ...++.+|. ||--..|-+
T Consensus 23 NFd~~~V~~i~~AA~~ggAt~vDIAad-p~---LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEI--GNfDsFY~q 96 (242)
T PF04481_consen 23 NFDAESVAAIVKAAEIGGATFVDIAAD-PE---LVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEI--GNFDSFYAQ 96 (242)
T ss_pred ccCHHHHHHHHHHHHccCCceEEecCC-HH---HHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEe--cchHHHHhc
Confidence 457788888888888899999988765 21 2233333334554322 11110 112222332 232222221
Q ss_pred hhcccccC----HHHHHHHHHhc-CCCEEEEec--CC----HHHHHHHHHcCCcEEEEecccccCC---C--------CC
Q 021739 146 NQIDRSLN----WKDVKWLQTIT-SLPILVKGV--LT----AEDASLAIQYGAAGIIVSNHGARQL---D--------YV 203 (308)
Q Consensus 146 ~~~d~~~~----~~~i~~ir~~~-~~Pv~vK~~--~~----~e~a~~~~~~G~d~i~v~~~gg~~~---~--------~~ 203 (308)
-..|. ++..++.|+.. ++|+.|-.- +. .+.+..+.++|+|.|.-- ||+.. . ..
T Consensus 97 ---Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTE--Ggtss~p~~~g~lglIeka 171 (242)
T PF04481_consen 97 ---GRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTE--GGTSSKPTSPGILGLIEKA 171 (242)
T ss_pred ---CCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcC--CCCCCCCCCcchHHHHHHH
Confidence 12333 34455555543 677766432 22 244889999999999753 33221 1 11
Q ss_pred cchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 204 PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 204 ~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.|++.+.+.+.+.+ ++||+...|+.. -.+--++++||++|++|+.+-.
T Consensus 172 apTLAaay~ISr~v--~iPVlcASGlS~-vT~PmAiaaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 172 APTLAAAYAISRAV--SIPVLCASGLSA-VTAPMAIAAGASGVGVGSAVNR 219 (242)
T ss_pred hHHHHHHHHHHhcc--CCceEeccCcch-hhHHHHHHcCCcccchhHHhhh
Confidence 35666667776666 899999999985 4566789999999999998754
No 183
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.80 E-value=0.0047 Score=61.07 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+.+..+.++|+|.|.+....|+. ...++.+.++++.. .+++|++ |.+.|.+++..++.+|||++-+|
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~-~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNY-PHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhC-CCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 56889999999999987643321 12356778887764 3688888 89999999999999999999764
No 184
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.79 E-value=0.0019 Score=56.63 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=29.1
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 221 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 221 ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.++.+.|||+. +++.+++..|+|.|.+||+++.
T Consensus 171 ~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 171 ILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred ceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 44778899997 8999999999999999999885
No 185
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.78 E-value=0.00042 Score=63.56 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCCE-EEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc---cCCCeEEEecCC
Q 021739 154 WKDVKWLQTITSLPI-LVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGV 229 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv-~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI 229 (308)
.+.++.+|+..+... +--.+-+.+++..+.++|+|+|.+.+-+ .+.+.++.+.+ ..++|+.++|||
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~----------~e~l~~av~~~~~~~~~i~leAsGGI 252 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMP----------VDLMQQAVQLIRQQNPRVKIEASGNI 252 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 356788887764222 2224578999999999999999987532 34444443332 357999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 230 RRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
|.+++.++.++|+|.+.+|++...
T Consensus 253 -t~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 253 -TLETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred -CHHHHHHHHHcCCCEEEEchhhhC
Confidence 599999999999999999997763
No 186
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.77 E-value=0.0017 Score=57.43 Aligned_cols=137 Identities=19% Similarity=0.209 Sum_probs=88.9
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
..|+..+.+.++++++.|++.+=+.+ . + +.++ .+-.
T Consensus 12 ~ad~~~l~~~i~~l~~~g~d~lHiDi----m----------------------D---------------G~FV---PN~t 47 (223)
T PRK08745 12 SADFARLGEEVDNVLKAGADWVHFDV----M----------------------D---------------NHYV---PNLT 47 (223)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEec----c----------------------c---------------CccC---CCcc
Confidence 45777888899999999999864432 0 0 0011 0112
Q ss_pred cCHHHHHHHHHh-cCCCEEEEec-CCHH-HHHHHHHcCCcEEEEecc---------------c---c------cC-----
Q 021739 152 LNWKDVKWLQTI-TSLPILVKGV-LTAE-DASLAIQYGAAGIIVSNH---------------G---A------RQ----- 199 (308)
Q Consensus 152 ~~~~~i~~ir~~-~~~Pv~vK~~-~~~e-~a~~~~~~G~d~i~v~~~---------------g---g------~~----- 199 (308)
+..+.++++|+. +++|+=+-+- .+++ .+..+.++|+|.|.++-. | | +.
T Consensus 48 fg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 48 IGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILD 127 (223)
T ss_pred cCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHH
Confidence 345789999987 5888776653 4454 477888999999988641 0 0 10
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHcc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 200 -----LD-----------YV----PATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 200 -----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
.| +| +...+-+.++++... .++.|-++|||. .+.+.++.++|||.+.+||.++
T Consensus 128 ~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred HHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhh
Confidence 00 11 223334444443321 247799999998 7888898999999999999855
No 187
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.77 E-value=0.00045 Score=62.73 Aligned_cols=87 Identities=25% Similarity=0.236 Sum_probs=65.3
Q ss_pred HHHHHHHHhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHH
Q 021739 155 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 233 (308)
Q Consensus 155 ~~i~~ir~~~~-~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (308)
..++++|+..+ -..+.-.+-+.+++..+.++|+|+|.+.+- ..+.+.++.+.+...+|+.++|||. .+
T Consensus 166 ~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI~-~~ 234 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGIT-LD 234 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCCC-HH
Confidence 34778887664 222223457889999999999999988552 2355666665554459999999995 99
Q ss_pred HHHHHHHcCCCEEEEchHH
Q 021739 234 DVFKALALGASGVFVGRPV 252 (308)
Q Consensus 234 d~~k~l~~GAd~V~ig~~~ 252 (308)
++.+..+.|+|.+.+|...
T Consensus 235 ni~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 235 NLEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHHcCCCEEEeCHHH
Confidence 9999999999999996543
No 188
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.76 E-value=0.00044 Score=63.09 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=65.5
Q ss_pred HHHHHHHHhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHH
Q 021739 155 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 233 (308)
Q Consensus 155 ~~i~~ir~~~~-~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (308)
+.++.+|+..+ .+|.+ .+-+.+++..+.++|+|+|.+.+- +.+.+.++.+..+.++|+.++||| +.+
T Consensus 178 ~av~~~r~~~~~~~I~V-Ev~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGI-t~~ 245 (277)
T PRK05742 178 QAVAAAHRIAPGKPVEV-EVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGI-NES 245 (277)
T ss_pred HHHHHHHHhCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCC-CHH
Confidence 34667776542 33332 346789999999999999987542 345566665554457999999999 499
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 021739 234 DVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 234 d~~k~l~~GAd~V~ig~~~l~ 254 (308)
++.++.++|+|.+.+|++...
T Consensus 246 ni~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 246 TLRVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHHHcCCCEEEEChhhcC
Confidence 999999999999999986543
No 189
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00055 Score=59.53 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=71.1
Q ss_pred hcCCCEEEEec--CCHHHH-HHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHH
Q 021739 163 ITSLPILVKGV--LTAEDA-SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL 239 (308)
Q Consensus 163 ~~~~Pv~vK~~--~~~e~a-~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l 239 (308)
.+++-+.+=+. .+++.. +.+.++|+|.+.++-.-..|..+..+.++.+..+++.......|-..|||. ++++..+.
T Consensus 104 ~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~ 182 (217)
T COG0269 104 EYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFK 182 (217)
T ss_pred HcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCC-HHHHHHHh
Confidence 35666665544 456664 555559999998853211122222334677777776654348999999997 99999999
Q ss_pred HcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHH
Q 021739 240 ALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFE 276 (308)
Q Consensus 240 ~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~ 276 (308)
..|++.|.+||.+..+ .++ .+..+.++++++
T Consensus 183 ~~~~~ivIvGraIt~a---~dp---~~~a~~~~~~i~ 213 (217)
T COG0269 183 GIGADIVIVGRAITGA---KDP---AEAARKFKEEID 213 (217)
T ss_pred cCCCCEEEECchhcCC---CCH---HHHHHHHHHHHh
Confidence 9999999999998753 343 344455555553
No 190
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.75 E-value=0.0079 Score=52.86 Aligned_cols=173 Identities=20% Similarity=0.137 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHcCCceeecCCC------CCC----HHHHhccCCCCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecC
Q 021739 29 GECATARAASAAGTIMTLSSWA------TSS----VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 98 (308)
Q Consensus 29 ~~~~~a~~a~~~g~~~~~s~~~------~~~----~e~i~~~~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~ 98 (308)
+|..-.+.+.+.|.--.+||.- ..+ +++++...+++..+|++ +.|.+.+.+..+++.+..- .+.|-+
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~-~~~~~~mi~~a~~l~~~~~-~i~iKI- 84 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETI-SLDAEGMVEEAKELAKLAP-NIVVKI- 84 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEe-eCCHHHHHHHHHHHHHhCC-CeEEEe-
Confidence 4566777788888776777652 122 23444444567889997 6776666656666555443 344432
Q ss_pred CCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCHHH
Q 021739 99 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 178 (308)
Q Consensus 99 ~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~ 178 (308)
|.. . . .++.++.+++. ++++-+=.+.+.+.
T Consensus 85 -P~T------------------~----------------~--------------Gl~A~~~L~~~-Gi~v~~T~vfs~~Q 114 (213)
T TIGR00875 85 -PMT------------------S----------------E--------------GLKAVKILKKE-GIKTNVTLVFSAAQ 114 (213)
T ss_pred -CCC------------------H----------------H--------------HHHHHHHHHHC-CCceeEEEecCHHH
Confidence 321 0 0 02455666543 78887777899999
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+..+.++|+++|...- ||-.+.+.+....+.++.+.+ ..+..|++ ..+|+..++.++..+|||.|-+.-.++..
T Consensus 115 a~~Aa~aGa~yispyv--gRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-AS~r~~~~v~~~~~~G~d~vTip~~vl~~ 191 (213)
T TIGR00875 115 ALLAAKAGATYVSPFV--GRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-ASVRHPRHVLEAALIGADIATMPLDVMQQ 191 (213)
T ss_pred HHHHHHcCCCEEEeec--chHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-eccCCHHHHHHHHHcCCCEEEcCHHHHHH
Confidence 9999999999987542 222222333455555554433 23566555 67999999999999999999999988887
Q ss_pred cc
Q 021739 256 LA 257 (308)
Q Consensus 256 ~~ 257 (308)
+.
T Consensus 192 l~ 193 (213)
T TIGR00875 192 LF 193 (213)
T ss_pred HH
Confidence 64
No 191
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.75 E-value=0.00055 Score=64.39 Aligned_cols=79 Identities=27% Similarity=0.249 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHcCCcEEEEecccccCCC--CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 173 VLTAEDASLAIQYGAAGIIVSNHGARQLD--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 173 ~~~~e~a~~~~~~G~d~i~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
+-+.+++..+.+.|+|+|.++....+... ..+..++.+..+.+.. .+|+++-|||. .+++.+.+.+||++|.+++
T Consensus 247 ~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvis 323 (347)
T PRK02615 247 TTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSNIPEVLQAGAKRVAVVR 323 (347)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCcEEEEeH
Confidence 35789999999999999988654332211 1234466777776554 79999999996 8999999999999999999
Q ss_pred HHHH
Q 021739 251 PVPF 254 (308)
Q Consensus 251 ~~l~ 254 (308)
.++.
T Consensus 324 aI~~ 327 (347)
T PRK02615 324 AIMG 327 (347)
T ss_pred HHhC
Confidence 9875
No 192
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.74 E-value=0.00056 Score=59.00 Aligned_cols=80 Identities=25% Similarity=0.205 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHHcCCcEEEEecccccCCCC---CcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 173 VLTAEDASLAIQYGAAGIIVSNHGARQLDY---VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 173 ~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+-+.+++..+.+.|+|++.++.-.-+.... .+..++.+.++.+.. .++||++.||| +.+++.+++.+|+++|.+|
T Consensus 103 ~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~-~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~ 180 (196)
T TIGR00693 103 THNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS-IDIPIVAIGGI-TLENAAEVLAAGADGVAVV 180 (196)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEh
Confidence 457788888999999999886532221111 112466677766543 25999999999 5899999999999999999
Q ss_pred hHHHH
Q 021739 250 RPVPF 254 (308)
Q Consensus 250 ~~~l~ 254 (308)
+.+..
T Consensus 181 ~~i~~ 185 (196)
T TIGR00693 181 SAIMQ 185 (196)
T ss_pred HHhhC
Confidence 99875
No 193
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.74 E-value=0.001 Score=56.86 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCCEE--EEec---------CCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCe
Q 021739 154 WKDVKWLQTITSLPIL--VKGV---------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 222 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~--vK~~---------~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 222 (308)
.+.|+.+|+.+++||+ +|-. .+.+++..+.++|+|.|-+....+... .+..+.+.++++.. .+
T Consensus 21 ~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~---~l 94 (192)
T PF04131_consen 21 VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY---QL 94 (192)
T ss_dssp HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT---SE
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC---cE
Confidence 4788999999999985 3421 467899999999999999887543211 22334456665432 55
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+++ .|.|.+|...+..+|+|.|.--
T Consensus 95 ~MA--Dist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 95 VMA--DISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp EEE--E-SSHHHHHHHHHTT-SEEE-T
T ss_pred Eee--ecCCHHHHHHHHHcCCCEEEcc
Confidence 555 6899999999999999998643
No 194
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.0031 Score=55.18 Aligned_cols=135 Identities=22% Similarity=0.218 Sum_probs=90.5
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
..|.....+.+++++++|++.+=+.+ . .+. +-|+
T Consensus 12 saD~~~l~~el~~~~~agad~iH~DV----M-------Dgh-----------------------------------FVPN 45 (220)
T COG0036 12 SADFARLGEELKALEAAGADLIHIDV----M-------DGH-----------------------------------FVPN 45 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEEEEec----c-------CCC-----------------------------------cCCC
Confidence 45778888999999999999864432 0 001 1122
Q ss_pred --cCHHHHHHHHHhcCCCEEEEec-CCHH-HHHHHHHcCCcEEEEecc---------------c---------ccCC---
Q 021739 152 --LNWKDVKWLQTITSLPILVKGV-LTAE-DASLAIQYGAAGIIVSNH---------------G---------ARQL--- 200 (308)
Q Consensus 152 --~~~~~i~~ir~~~~~Pv~vK~~-~~~e-~a~~~~~~G~d~i~v~~~---------------g---------g~~~--- 200 (308)
+....++++|+.++.|+-+-+- .+++ .+...+++|+|.|+++-. | +|..
T Consensus 46 iTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i 125 (220)
T COG0036 46 ITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEAL 125 (220)
T ss_pred cccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHH
Confidence 2346889999988899887754 4554 478899999999998742 1 1110
Q ss_pred -------C-----------CC----cchHHHHHHHHHHccC--CCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 201 -------D-----------YV----PATVMALEEVVQAAKG--RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 201 -------~-----------~~----~~~~~~l~~i~~~~~~--~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
| +| +...+-+.++++.... ++-|-++|||. .+.+.++.++|||.+..||.++
T Consensus 126 ~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF 201 (220)
T COG0036 126 EPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSALF 201 (220)
T ss_pred HHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEe
Confidence 0 11 2233444555444321 57799999997 6778888889999999999544
No 195
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.73 E-value=0.0013 Score=56.41 Aligned_cols=155 Identities=22% Similarity=0.233 Sum_probs=97.8
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
+.|.+.+.++++-.+..|.+.|.+++ |. +.|. +|.+.++.. ....+.+...-+
T Consensus 28 ~P~v~~T~kilkglq~gG~dIIELGv--Pf------------SDp~---------ADGPtIq~~----n~~aL~ng~tl~ 80 (268)
T KOG4175|consen 28 DPDVSTTAKILKGLQSGGSDIIELGV--PF------------SDPL---------ADGPTIQAA----NRRALLNGTTLN 80 (268)
T ss_pred CCcHHHHHHHHHHHhcCCcCeEEecC--cc------------Cccc---------cCCchhhhh----HHHHHHcCCcHH
Confidence 34667888899988899999988875 53 3331 122233321 112333222233
Q ss_pred cCHHHHHHHHHh-cCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------ccc---------cC
Q 021739 152 LNWKDVKWLQTI-TSLPILVKGVLTA-------EDASLAIQYGAAGIIVSN---------------HGA---------RQ 199 (308)
Q Consensus 152 ~~~~~i~~ir~~-~~~Pv~vK~~~~~-------e~a~~~~~~G~d~i~v~~---------------~gg---------~~ 199 (308)
..++++++.|.+ +.+||++-+..++ ..++.+.++|+.++.+-. |+- +.
T Consensus 81 ~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTt 160 (268)
T KOG4175|consen 81 SIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTT 160 (268)
T ss_pred HHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCCh
Confidence 356788888877 6899998876443 347788899999888743 110 00
Q ss_pred ----------CC-----------CC-cc----hH-HHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 021739 200 ----------LD-----------YV-PA----TV-MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 200 ----------~~-----------~~-~~----~~-~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~ 252 (308)
.+ .+ .. .. +.+.++++.. ++.|+...-||.++++....-.. ||.|.+|+.+
T Consensus 161 deRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSki 238 (268)
T KOG4175|consen 161 DERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKI 238 (268)
T ss_pred HHHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHH
Confidence 00 01 11 11 2345555554 46899999999999999876555 9999999998
Q ss_pred HHh
Q 021739 253 PFS 255 (308)
Q Consensus 253 l~~ 255 (308)
+.-
T Consensus 239 v~l 241 (268)
T KOG4175|consen 239 VKL 241 (268)
T ss_pred HHH
Confidence 764
No 196
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.71 E-value=0.0002 Score=62.54 Aligned_cols=99 Identities=33% Similarity=0.427 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCCEEEEecC-CHHHHHHHHHcCCcEEEEec---------------------ccccCC------------
Q 021739 155 KDVKWLQTITSLPILVKGVL-TAEDASLAIQYGAAGIIVSN---------------------HGARQL------------ 200 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~-~~e~a~~~~~~G~d~i~v~~---------------------~gg~~~------------ 200 (308)
+.|++|.+.+.+||..|.+. ...+|+.+...|+|+|.=|- +|.+.+
T Consensus 67 ~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAa 146 (296)
T COG0214 67 KMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAA 146 (296)
T ss_pred HHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHH
Confidence 68899999999999999884 56789999999999998542 111100
Q ss_pred ----CC----C----------------------------------cchHHHHHHHHHHccCCCeE--EEecCCCCHHHHH
Q 021739 201 ----DY----V----------------------------------PATVMALEEVVQAAKGRVPV--FLDGGVRRGTDVF 236 (308)
Q Consensus 201 ----~~----~----------------------------------~~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~d~~ 236 (308)
.+ + ...++.+.++++. +++|| ++.|||-|+.|+.
T Consensus 147 MIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPADAA 224 (296)
T COG0214 147 MIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPADAA 224 (296)
T ss_pred HHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhHHH
Confidence 00 0 0112223333222 35564 6899999999999
Q ss_pred HHHHcCCCEEEEchHHHHh
Q 021739 237 KALALGASGVFVGRPVPFS 255 (308)
Q Consensus 237 k~l~~GAd~V~ig~~~l~~ 255 (308)
-++.+|||.|.+||.+++.
T Consensus 225 LMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 225 LMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred HHHHhCCCeEEecccccCC
Confidence 9999999999999998764
No 197
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.70 E-value=0.0013 Score=57.66 Aligned_cols=95 Identities=20% Similarity=0.185 Sum_probs=68.6
Q ss_pred HHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEecccccCCC--CCcchHHHHHHHHHHccCCCeEEEecCCCCHHH
Q 021739 158 KWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQLD--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 234 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 234 (308)
...++..+-..++..+ -+.+++..+.+.|+|+|.++.-..++.. ..+..++.+.++.+.. ++|+++-|||. .+.
T Consensus 95 ~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi~-~~n 171 (211)
T COG0352 95 AEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGIN-LEN 171 (211)
T ss_pred HHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCCC-HHH
Confidence 3334433333344443 4789999999999999988654333322 2234566777776654 59999999997 899
Q ss_pred HHHHHHcCCCEEEEchHHHHh
Q 021739 235 VFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 235 ~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+...++.||+.|.+-|.++.+
T Consensus 172 v~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 172 VPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred HHHHHHhCCCeEEehhHhhcC
Confidence 999999999999999998864
No 198
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.70 E-value=0.00052 Score=62.44 Aligned_cols=88 Identities=24% Similarity=0.227 Sum_probs=67.2
Q ss_pred HHHHHHHHhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHH
Q 021739 155 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 233 (308)
Q Consensus 155 ~~i~~ir~~~~-~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (308)
..++.+|+..+ -..+.-.+-+.+++..+.++|+|+|.+.+- ..+.+.++.+.+..++|+.++|||. .+
T Consensus 170 ~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI~-~~ 238 (268)
T cd01572 170 EAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGIT-LE 238 (268)
T ss_pred HHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCCC-HH
Confidence 45778887764 222222446889999999999999988653 2466777666554469999999994 99
Q ss_pred HHHHHHHcCCCEEEEchHHH
Q 021739 234 DVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 234 d~~k~l~~GAd~V~ig~~~l 253 (308)
++.+..+.|+|.+.+|++..
T Consensus 239 ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 239 NIRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHcCCCEEEEEeeec
Confidence 99999999999999998654
No 199
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.70 E-value=0.00042 Score=63.98 Aligned_cols=96 Identities=20% Similarity=0.273 Sum_probs=66.4
Q ss_pred HHHHHHHhc--CCCEEEEecCCHHHHHHHHHcCCcEEEEeccc-ccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCH
Q 021739 156 DVKWLQTIT--SLPILVKGVLTAEDASLAIQYGAAGIIVSNHG-ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 232 (308)
Q Consensus 156 ~i~~ir~~~--~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (308)
.+++.+..+ ++-+++=...++..++++.+.|+-++.--+.. |+. .+....+.+..+.+.. ++||+.++||.++
T Consensus 186 ~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg--~gv~~p~~i~~~~e~~--~vpVivdAGIg~~ 261 (326)
T PRK11840 186 TLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSG--LGIQNPYTIRLIVEGA--TVPVLVDAGVGTA 261 (326)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCC--CCCCCHHHHHHHHHcC--CCcEEEeCCCCCH
Confidence 344444433 33333333478899999999999555421110 111 1234667777776654 7999999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHHh
Q 021739 233 TDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 233 ~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+|+.+++++|||+|.+.+++..+
T Consensus 262 sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 262 SDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred HHHHHHHHcCCCEEEEcceeccC
Confidence 99999999999999999988753
No 200
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.69 E-value=0.00027 Score=63.01 Aligned_cols=93 Identities=28% Similarity=0.350 Sum_probs=61.8
Q ss_pred HHHHHHHHHh---cCCCEEEEecCCHHH-------------HHHHHHcCCcEEEEecccccCCCCCcchHH---HHHHHH
Q 021739 154 WKDVKWLQTI---TSLPILVKGVLTAED-------------ASLAIQYGAAGIIVSNHGARQLDYVPATVM---ALEEVV 214 (308)
Q Consensus 154 ~~~i~~ir~~---~~~Pv~vK~~~~~e~-------------a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~---~l~~i~ 214 (308)
.+.++++++. +++|+++=..++.+. ++.+.++|+|+|..+..+ . ...+.. .+.++.
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~-~----~~~t~~~~~~~~~~~ 185 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGK-P----VGATPEDVELMRKAV 185 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SS-S----SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCc-c----ccccHHHHHHHHHHH
Confidence 3556666554 478887764433222 567789999999986431 1 122333 344444
Q ss_pred HHccCCCe----EEEecCC------CCHHHHHHHHHcCC--CEEEEchHHH
Q 021739 215 QAAKGRVP----VFLDGGV------RRGTDVFKALALGA--SGVFVGRPVP 253 (308)
Q Consensus 215 ~~~~~~ip----via~GGI------~~~~d~~k~l~~GA--d~V~ig~~~l 253 (308)
+.. .+| |.++||+ ++.+++.+++.+|| .++..||.+.
T Consensus 186 ~~~--~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 186 EAA--PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp HTH--SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred Hhc--CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 333 466 9999999 99999999999999 7888888765
No 201
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.69 E-value=0.00057 Score=60.72 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+.++.+.+.|++.+.+..-.+. ..........+.++.+.. ++||+++|||++.+|+.+++..||+.|.+|+.++.
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~-~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDAS-KRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCc-ccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 35678888999999988654321 112234667778887765 78999999999999999999999999999998775
No 202
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.68 E-value=0.00058 Score=62.30 Aligned_cols=88 Identities=23% Similarity=0.229 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHcc---CCCeEEEecCCC
Q 021739 154 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGVR 230 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~ 230 (308)
.+.++.+|+..+-..+.-.+-+.+++..+.++|+|+|.+.+-. + +.+.++.+.++ .++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p---~~l~~~~~~~~~~~~~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------P---EELAELVPKLRSLAPPVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHHhccCCCceEEEECCC-
Confidence 4567777776532222224578899999999999999886531 1 22333333222 36999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHH
Q 021739 231 RGTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~ig~~~ 252 (308)
+.+++.+....|+|.+.+|+.+
T Consensus 240 ~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 240 NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred CHHHHHHHHHcCCcEEEEChhh
Confidence 7999999999999999777653
No 203
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.68 E-value=0.00064 Score=62.07 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCCEEEE-ecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHH
Q 021739 155 KDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 233 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK-~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (308)
+.++.+|+..+-...+. .+-+.+++..+.+.|+|+|.+.+ -..+.+.++.+.+..++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 45778887764222233 34688999999999999998743 1346677776655446889999999 599
Q ss_pred HHHHHHHcCCCEEEEchHHH
Q 021739 234 DVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 234 d~~k~l~~GAd~V~ig~~~l 253 (308)
++.+..+.|+|.+.+|++..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998654
No 204
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.64 E-value=0.027 Score=51.61 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=73.4
Q ss_pred CCHHHHHHHH-HcCCcEEEEecc--cccCCCCCcchHHHHHHHHHHccCCCeEEEec--CCCCHHHHHHHHHcCCCEEEE
Q 021739 174 LTAEDASLAI-QYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVPVFLDG--GVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 174 ~~~e~a~~~~-~~G~d~i~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G--GI~~~~d~~k~l~~GAd~V~i 248 (308)
.+++++..+. +.|+|++-++.. .++.....+-.++.|.++.+.+ ++|+++-| ||. .+++.+++..|++.+.+
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKINV 229 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEE
Confidence 4678888876 469999998432 2222112234678888988776 79999999 887 78999999999999999
Q ss_pred chHHHHhcc-------cC--C---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 249 GRPVPFSLA-------VD--G---EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 249 g~~~l~~~~-------~~--G---~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
.+.+..+.. .. . .+-.....+.+++..+..|+.+|..
T Consensus 230 ~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 230 ATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 998865421 00 0 0112333345566666667666643
No 205
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.60 E-value=0.00038 Score=62.48 Aligned_cols=74 Identities=18% Similarity=0.066 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCcEEEEeccc--ccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHH---HcCCCEEEEchH
Q 021739 177 EDASLAIQYGAAGIIVSNHG--ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL---ALGASGVFVGRP 251 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~g--g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l---~~GAd~V~ig~~ 251 (308)
+.++++.+.|+..|.+..-. |+. .| +.++.+.++.+.. ++|||++||+++.+|+.+.- ..|+++|.+|++
T Consensus 153 ~~~~~~~~~g~~~ii~tdI~~dGt~--~G-~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~A 227 (243)
T TIGR01919 153 VLERLLDSGGCSRVVVTDSKKDGLS--GG-PNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKL 227 (243)
T ss_pred HHHHHHHhCCCCEEEEEecCCcccC--CC-cCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHH
Confidence 56788899999999886532 221 23 4677777777664 79999999999999999864 359999999999
Q ss_pred HHHh
Q 021739 252 VPFS 255 (308)
Q Consensus 252 ~l~~ 255 (308)
|+.+
T Consensus 228 l~~g 231 (243)
T TIGR01919 228 LYAR 231 (243)
T ss_pred HHcC
Confidence 8754
No 206
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.59 E-value=0.00081 Score=60.04 Aligned_cols=76 Identities=26% Similarity=0.370 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+.++.+.+.|+|.+.+-.-.+. .......+..+.++.+.. .+|++..|||++.+|+..++.+||+.|.+|+..+.
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~-~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGA-FEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE 110 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhh-hcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 36788889999999987543221 112234567777777665 79999999999999999999999999999997763
No 207
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.59 E-value=0.0012 Score=60.22 Aligned_cols=87 Identities=26% Similarity=0.260 Sum_probs=64.4
Q ss_pred HHHHHHHHhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccC--CCeEEEecCCC
Q 021739 155 KDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG--RVPVFLDGGVR 230 (308)
Q Consensus 155 ~~i~~ir~~~~--~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipvia~GGI~ 230 (308)
..++++|+..+ .+|. -.+-+.+++..+.++|+|+|.+.+-. .+.+.++.+.++. ++|+.++|||.
T Consensus 169 ~~v~~~r~~~~~~~~I~-vev~t~eea~~A~~~gaD~I~ld~~~----------~e~l~~~v~~i~~~~~i~i~asGGIt 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIE-VEVETLEEAEEALEAGADIIMLDNMS----------PEELKEAVKLLKGLPRVLLEASGGIT 237 (269)
T ss_pred HHHHHHHHhCCCCCeEE-EecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhccCCCeEEEEECCCC
Confidence 45788888764 3333 34568899999999999999886531 2444444443332 78999999997
Q ss_pred CHHHHHHHHHcCCCEEEEchHHH
Q 021739 231 RGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
.+++.+..+.|||.+.+|+.+.
T Consensus 238 -~~ni~~~a~~Gad~Isvgal~~ 259 (269)
T cd01568 238 -LENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred -HHHHHHHHHcCCCEEEEcHHHc
Confidence 8999999999999999976543
No 208
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.58 E-value=0.0025 Score=57.68 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=64.7
Q ss_pred CHHHHHHHHHhcCCCEEEEecCC-HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 153 NWKDVKWLQTITSLPILVKGVLT-AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~~~-~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
+.+.|++|++.+++||+-+.... ..+++.+.++|+|.|..+.. ..|..+.+..+++.. ++|+++ +++|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r-------~rP~~~~~~~iK~~~--~~l~MA--D~st 121 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEV-------LTPADEEHHIDKHKF--KVPFVC--GARN 121 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCC-------CCcHHHHHHHHHHHc--CCcEEc--cCCC
Confidence 35789999999999999877644 78899999999999953221 112344555555544 677776 8999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 021739 232 GTDVFKALALGASGVFV 248 (308)
Q Consensus 232 ~~d~~k~l~~GAd~V~i 248 (308)
.+++..+..+|||.|.-
T Consensus 122 leEal~a~~~Gad~I~T 138 (283)
T cd04727 122 LGEALRRISEGAAMIRT 138 (283)
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 99999999999998753
No 209
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.57 E-value=0.0049 Score=58.92 Aligned_cols=143 Identities=18% Similarity=0.151 Sum_probs=88.3
Q ss_pred HHHHhccCCC-CceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccC
Q 021739 54 VEEVSSTGPG-IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKM 132 (308)
Q Consensus 54 ~e~i~~~~~~-~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~ 132 (308)
++++.+..++ +.++-|. -.|+..+. ++.+.++|++.+.++...+
T Consensus 217 Vk~Lr~~~~~~~I~~DLK-~~Di~~~v--v~~~a~aGAD~vTVH~ea~-------------------------------- 261 (391)
T PRK13307 217 ISKIREVRPDAFIVADLK-TLDTGNLE--ARMAADATADAVVISGLAP-------------------------------- 261 (391)
T ss_pred HHHHHHhCCCCeEEEEec-ccChhhHH--HHHHHhcCCCEEEEeccCC--------------------------------
Confidence 4455554443 4666666 55666543 5666778998887764211
Q ss_pred CCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEE-Eec-CCH-HHHHHHHHcCCcEEEEecccccCCCCCcchHHH
Q 021739 133 DKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV-KGV-LTA-EDASLAIQYGAAGIIVSNHGARQLDYVPATVMA 209 (308)
Q Consensus 133 ~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~v-K~~-~~~-e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~ 209 (308)
.+.+ .+.++.+++. ++-+.+ -.. .++ +.++.+ ..++|.|.++..-..+ ...+.+..
T Consensus 262 --------~~ti---------~~ai~~akk~-GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~--~~~~~~~k 320 (391)
T PRK13307 262 --------ISTI---------EKAIHEAQKT-GIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGIDEE--GTEHAWGN 320 (391)
T ss_pred --------HHHH---------HHHHHHHHHc-CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEccccCCC--cccchHHH
Confidence 0011 1345555553 544444 222 234 344444 7799999886311111 22345666
Q ss_pred HHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 210 LEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 210 l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.++++. ..+++|.++|||. .+++.+++.+|||.+.+||.+..
T Consensus 321 I~~ikk~-~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 321 IKEIKKA-GGKILVAVAGGVR-VENVEEALKAGADILVVGRAITK 363 (391)
T ss_pred HHHHHHh-CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 7776654 3468999999999 88999999999999999999664
No 210
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.56 E-value=0.00075 Score=58.82 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=62.9
Q ss_pred cccCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 150 RSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 150 ~~~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
.+...+.|+++++.+ ++.|.+..+.+.++++.+.++|+++|+ +.+. +.+.+.... . .++|.+- |
T Consensus 43 t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~~---------~~~v~~~~~-~--~~i~~iP--G 107 (204)
T TIGR01182 43 TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-SPGL---------TPELAKHAQ-D--HGIPIIP--G 107 (204)
T ss_pred CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHHHH-H--cCCcEEC--C
Confidence 334567899998876 577888888999999999999999994 3221 122333322 2 2678887 9
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 021739 229 VRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~i 248 (308)
+.|+.++.+++++||+.|=+
T Consensus 108 ~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 108 VATPSEIMLALELGITALKL 127 (204)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999998753
No 211
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.56 E-value=0.0015 Score=58.63 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021739 153 NWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
..+.++++.+.+++||.+.+....++++.+.++|++.+.++.
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTS 105 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECc
Confidence 457889999888999999887666999999999999999854
No 212
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.55 E-value=0.001 Score=56.84 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHcCCcEEEEecccccCCC--CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 173 VLTAEDASLAIQYGAAGIIVSNHGARQLD--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 173 ~~~~e~a~~~~~~G~d~i~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
+-+.++++.+.+.|+|++.++.-..+... ..+..++.+.++.+.. ++||++-||| +++++.++..+||+.|.+-|
T Consensus 102 ~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 102 CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 36788899999999999998764322211 1234577777777766 6999999999 69999999999999999877
Q ss_pred HH
Q 021739 251 PV 252 (308)
Q Consensus 251 ~~ 252 (308)
++
T Consensus 179 aI 180 (180)
T PF02581_consen 179 AI 180 (180)
T ss_dssp HH
T ss_pred eC
Confidence 53
No 213
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.54 E-value=0.0011 Score=59.54 Aligned_cols=100 Identities=26% Similarity=0.243 Sum_probs=67.8
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec-----CCHHH-----HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc-
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV-----LTAED-----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA- 217 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~-----~~~e~-----a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~- 217 (308)
+.+...++|+++++..+-++.+|.+ ++.++ ++.+.++|+|+|.-|.+.+ .+..+.+.+.-+++.+
T Consensus 113 ~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~ 188 (257)
T PRK05283 113 NEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIR 188 (257)
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHH
Confidence 4444567888888876435677865 34332 4577899999998754321 1234555554444443
Q ss_pred ----cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 218 ----KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 218 ----~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.++.|=++|||+|.+++.+++.+|.+. +|--|+.
T Consensus 189 ~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~--lg~~~~~ 227 (257)
T PRK05283 189 DMGVAKTVGFKPAGGVRTAEDAAQYLALADEI--LGADWAD 227 (257)
T ss_pred hcccCCCeeEEccCCCCCHHHHHHHHHHHHHH--hChhhcC
Confidence 3468999999999999999999998765 4666654
No 214
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.53 E-value=0.0078 Score=53.44 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=74.0
Q ss_pred CHHHHHHHHHhcCCCEEEEec-CCHH-HHHHHHHcCCcEEEEeccc--c-----------------------cC------
Q 021739 153 NWKDVKWLQTITSLPILVKGV-LTAE-DASLAIQYGAAGIIVSNHG--A-----------------------RQ------ 199 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~-~~~e-~a~~~~~~G~d~i~v~~~g--g-----------------------~~------ 199 (308)
..+.++++|+.+++|+=+-+- .+++ .+..+.++|+|.|+++-.. . +.
T Consensus 47 g~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~ 126 (229)
T PRK09722 47 SPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKY 126 (229)
T ss_pred CHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHH
Confidence 357889998877888766643 4554 4778889999999886421 0 10
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHcc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcc
Q 021739 200 ----LD-----------YV----PATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 257 (308)
Q Consensus 200 ----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~ 257 (308)
.| +| +...+-+.++++... .++.|.++|||+ .+.+.++.++|||.+.+||..+|..
T Consensus 127 ~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~- 204 (229)
T PRK09722 127 YIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL- 204 (229)
T ss_pred HHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC-
Confidence 01 11 122333344433321 247799999998 6788899999999999998766531
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 021739 258 VDGEAGVRKVLQMLRDEFE 276 (308)
Q Consensus 258 ~~G~~~v~~~i~~l~~~l~ 276 (308)
... ..+.++.+++.++
T Consensus 205 ~~d---~~~~i~~l~~~~~ 220 (229)
T PRK09722 205 DED---IDEAWDIMTAQIE 220 (229)
T ss_pred CCC---HHHHHHHHHHHHH
Confidence 111 3345555554433
No 215
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.52 E-value=0.00057 Score=60.73 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
+.++.+.+. ++.+.+....|+. .+.++..+.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|+..+
T Consensus 34 ~~a~~~~~~-~~~l~ivDldga~-~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDGAF-EGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcchh-cCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 446666676 8888774433221 22345677888887664 7999999999999999999999999999999765
No 216
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.51 E-value=0.0013 Score=59.47 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=59.9
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.++.+.+.|++.+.+..-.+.. ....+..+.+.++.+.. .+||+++|||++.+|+.+++.+|++.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~~-~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDASK-RGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCCc-CCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 56888999999999987543211 11235677888887764 79999999999999999999999999999997764
No 217
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.51 E-value=0.0013 Score=59.63 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCCEEEEecCC-HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCH
Q 021739 154 WKDVKWLQTITSLPILVKGVLT-AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 232 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~~-~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (308)
.+.|++|++.+++||+.|.... ..+++.+.++|+|+|.-+.. ..|..+.+..+++.+ ++|+++ |++|.
T Consensus 56 p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~-------lrPade~~~~~K~~f--~vpfma--d~~~l 124 (287)
T TIGR00343 56 PKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEV-------LTPADWTFHIDKKKF--KVPFVC--GARDL 124 (287)
T ss_pred HHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCC-------CCcHHHHHHHHHHHc--CCCEEc--cCCCH
Confidence 4789999999999999998754 78999999999999963221 112334444444443 677766 89999
Q ss_pred HHHHHHHHcCCCEEE
Q 021739 233 TDVFKALALGASGVF 247 (308)
Q Consensus 233 ~d~~k~l~~GAd~V~ 247 (308)
++++.++..|||.+.
T Consensus 125 ~EAlrai~~GadmI~ 139 (287)
T TIGR00343 125 GEALRRINEGAAMIR 139 (287)
T ss_pred HHHHHHHHCCCCEEe
Confidence 999999999999875
No 218
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.50 E-value=0.0013 Score=58.67 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=58.9
Q ss_pred HHHHHHHH-cCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 177 EDASLAIQ-YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 177 e~a~~~~~-~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.|+...+ .|+|.+.+..-.+.. .+.+.....+.++.+.+ .+||.+.|||+|.+|+.+++.+||+.|.+|+..+.
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~ 110 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGAK-AQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQ 110 (234)
T ss_pred HHHHHHHhccCCCEEEEEECcccc-cCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhc
Confidence 56777777 699999986533221 12345677788887755 69999999999999999999999999999997654
No 219
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=97.50 E-value=0.029 Score=49.58 Aligned_cols=173 Identities=13% Similarity=0.124 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHcCCceeecCCC------CCC----HHHHhccCC--CCceEEeeecCCchHHHHHHHHHHHcCCcEEEEe
Q 021739 29 GECATARAASAAGTIMTLSSWA------TSS----VEEVSSTGP--GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 96 (308)
Q Consensus 29 ~~~~~a~~a~~~g~~~~~s~~~------~~~----~e~i~~~~~--~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~ 96 (308)
+|..-.+.+.+.|.--.|||.- ..+ ++++++..+ ++.++|+. ..|.+.+.+..+++.+.+.. +.|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~-~~d~e~mi~ea~~l~~~~~n-i~IK 85 (220)
T PRK12653 8 SDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVM-ATTAEGMVNDARKLRSIIAD-IVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEe-cCCHHHHHHHHHHHHHhCCC-EEEE
Confidence 3566667777788777777652 122 344544432 37788997 67776666666665555433 4443
Q ss_pred cCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH
Q 021739 97 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA 176 (308)
Q Consensus 97 ~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~ 176 (308)
+ |.. . . .++.++.+++. ++++-+=.+.+.
T Consensus 86 I--P~T------------------~----------------~--------------Gl~A~~~L~~~-GI~vn~T~vfs~ 114 (220)
T PRK12653 86 V--PVT------------------A----------------E--------------GLAAIKMLKAE-GIPTLGTAVYGA 114 (220)
T ss_pred e--CCC------------------H----------------H--------------HHHHHHHHHHc-CCCeeEEEecCH
Confidence 2 321 0 0 12455666553 788877778999
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
+.+..+..+|+++|...- ||-.+.+......+.++.+.+ ..+..|++ ..+++..++.+++.+|||.+-+.-.++
T Consensus 115 ~Qa~~Aa~aGa~yIspyv--gR~~~~g~dg~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12653 115 AQGLLSALAGAEYVAPYV--NRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDVA 191 (220)
T ss_pred HHHHHHHhcCCcEEEeec--ChHhhcCCChHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 999999999999987542 221122222333344443322 22444444 569999999999999999999999888
Q ss_pred Hhcc
Q 021739 254 FSLA 257 (308)
Q Consensus 254 ~~~~ 257 (308)
..+.
T Consensus 192 ~~l~ 195 (220)
T PRK12653 192 QQMI 195 (220)
T ss_pred HHHH
Confidence 8764
No 220
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.50 E-value=0.00057 Score=61.36 Aligned_cols=69 Identities=26% Similarity=0.148 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+.|+...+.|++.+++..- +.+..+.+.++.+.+ .+||...||||+ +++.+++.+||+.|.+|+.++.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 57899999999999997643 223677888887766 699999999997 9999999999999999998765
No 221
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.50 E-value=0.0017 Score=58.81 Aligned_cols=88 Identities=24% Similarity=0.341 Sum_probs=60.3
Q ss_pred HHHHHHhcCCCEEEEec--------CCHH---H-HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEE
Q 021739 157 VKWLQTITSLPILVKGV--------LTAE---D-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 224 (308)
Q Consensus 157 i~~ir~~~~~Pv~vK~~--------~~~e---~-a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 224 (308)
+.++...+++|+++... .+.+ . ++.+.++|+|+|.++.. ...+.+.++.+.. ++||.
T Consensus 128 i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVv 196 (258)
T TIGR01949 128 IAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVV 196 (258)
T ss_pred HHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEE
Confidence 33444456899887432 1222 2 46778899999986421 2456677666544 79999
Q ss_pred EecCCC--CHHHH----HHHHHcCCCEEEEchHHHHh
Q 021739 225 LDGGVR--RGTDV----FKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 225 a~GGI~--~~~d~----~k~l~~GAd~V~ig~~~l~~ 255 (308)
+.|||+ +.+++ .+++++||+.+.+|+.++..
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 999999 64544 45558999999999998864
No 222
>PRK08005 epimerase; Validated
Probab=97.48 E-value=0.0072 Score=52.96 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=86.7
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
..|+..+.+.+++++++|++.+ ++|. .. ..| + .+-.
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~l--HiDv-MD--------G~F------------------------------V---PN~t 44 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSL--HLDI-ED--------TSF------------------------------I---NNIT 44 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEE--EEec-cC--------CCc------------------------------C---Cccc
Confidence 4577788889999999999875 4431 00 001 1 0112
Q ss_pred cCHHHHHHHHHhcCCCEEEEec-CCHH-HHHHHHHcCCcEEEEeccc--------------c----------cC------
Q 021739 152 LNWKDVKWLQTITSLPILVKGV-LTAE-DASLAIQYGAAGIIVSNHG--------------A----------RQ------ 199 (308)
Q Consensus 152 ~~~~~i~~ir~~~~~Pv~vK~~-~~~e-~a~~~~~~G~d~i~v~~~g--------------g----------~~------ 199 (308)
+..+.++++|+.++.|+=+-+- .+++ .++.+.++|+|.|+++-.. | +.
T Consensus 45 fG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~ 124 (210)
T PRK08005 45 FGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124 (210)
T ss_pred cCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 2346788898877888766653 3454 4678888999999886410 0 11
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 200 ----LD-----------YV----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 200 ----~~-----------~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
.| +| +...+-+.++++.. ....|.++|||+ .+.+.++.++|||.+.+||.++
T Consensus 125 ~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~-~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF-PAAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhc-ccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 01 11 12233344443332 234799999998 7888899999999999999865
No 223
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.48 E-value=0.0019 Score=57.25 Aligned_cols=75 Identities=29% Similarity=0.379 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.++...+.|++.+.+..-.+.. .+.....+.+.++.+.+ .+|+...|||++.+|+.+++.+|||.|.+|+..+.
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~~-~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGAK-EGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCccc-cCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 56788889999999986433221 12334567778887765 68999999999999999999999999999987764
No 224
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.48 E-value=0.011 Score=53.41 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=54.9
Q ss_pred HHHHHHHHcC-CcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 177 EDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 177 e~a~~~~~~G-~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
+.++.+...| +|+|++++.+ .+.+.+++.+.++++.. .++|++..||+. ++++.+++.. ||++.+||.|=
T Consensus 161 e~a~~~~~~~~aDavivtG~~----TG~~~d~~~l~~vr~~~-~~~PvllggGvt-~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKT----TGTEVDLELLKLAKETV-KDTPVLAGSGVN-LENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCC----CCCCCCHHHHHHHHhcc-CCCeEEEECCCC-HHHHHHHHhh-CCEEEECCCcc
Confidence 4577776666 9999998753 12356788888887644 368999999997 8999999887 99999999864
No 225
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.47 E-value=0.001 Score=58.27 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
.|.|++..+.|+|-++.-.-..+ .++..+..+.+.++++.+ .+|+-..|||++.+|+.+.|.+|||-|.+.++.+..
T Consensus 33 VelA~~Y~e~GADElvFlDItAs-~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~ 109 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITAS-SEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKD 109 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccc-cccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcC
Confidence 47789999999999886432211 122345677888887776 799999999999999999999999999999988753
No 226
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.46 E-value=0.0018 Score=59.11 Aligned_cols=87 Identities=23% Similarity=0.284 Sum_probs=65.8
Q ss_pred HHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc-----cCCCeEEEecC
Q 021739 155 KDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA-----KGRVPVFLDGG 228 (308)
Q Consensus 155 ~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia~GG 228 (308)
+.++.+|+.. ..+|.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+.+ +.++.+.++||
T Consensus 171 ~av~~~r~~~~~~kIeV-Ev~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEV-EVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 4577777754 355443 457899999999999999988763 234444444322 24688999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 229 VRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
| +.+.+.++..+|+|.+.+|++..
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 79999999999999999998765
No 227
>PRK01362 putative translaldolase; Provisional
Probab=97.45 E-value=0.035 Score=48.79 Aligned_cols=173 Identities=17% Similarity=0.129 Sum_probs=108.9
Q ss_pred HHHHHHHHHHcCCceeecCCC------CCC----HHHHhccCCCCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCC
Q 021739 30 ECATARAASAAGTIMTLSSWA------TSS----VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 99 (308)
Q Consensus 30 ~~~~a~~a~~~g~~~~~s~~~------~~~----~e~i~~~~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~ 99 (308)
|..-.+.+.+.|.--.+||.- ... +++++...+++..+|+. ..|.+.+.+..+++.+.+ +.+.|-+
T Consensus 9 ~~~ei~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~i~g~vs~qv~-~~d~~~m~~~a~~l~~~~-~~i~iKI-- 84 (214)
T PRK01362 9 NVEEIKEANELGVLDGVTTNPSLIAKEGRDFEEVIKEICSIVDGPVSAEVI-ALDAEGMIKEGRELAKIA-PNVVVKI-- 84 (214)
T ss_pred CHHHHHHHHhCCCcceEcCCHHHHHhcCCCHHHHHHHHHHhcCCCEEEEEe-eCCHHHHHHHHHHHHHhC-CCEEEEe--
Confidence 455566667777655566541 112 23444444567888987 667666665566655554 3344433
Q ss_pred CCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCHHHH
Q 021739 100 PRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDA 179 (308)
Q Consensus 100 p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a 179 (308)
|+. . . .++.++.+++. ++++-+=.+.+.+.+
T Consensus 85 P~T------------------~----------------~--------------G~~a~~~L~~~-Gi~v~~T~vfs~~Qa 115 (214)
T PRK01362 85 PMT------------------P----------------E--------------GLKAVKALSKE-GIKTNVTLIFSANQA 115 (214)
T ss_pred CCC------------------H----------------H--------------HHHHHHHHHHC-CCceEEeeecCHHHH
Confidence 321 0 0 02455666553 788877778999999
Q ss_pred HHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHcc--CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcc
Q 021739 180 SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK--GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 257 (308)
Q Consensus 180 ~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~ 257 (308)
..+.++|+++|...- ||-.+.+.+....+.++.+.+. +.-+-|....+++..++.++..+|||.+-+.-.++..+.
T Consensus 116 ~~Aa~aGa~yispyv--gRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~ 193 (214)
T PRK01362 116 LLAAKAGATYVSPFV--GRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQLF 193 (214)
T ss_pred HHHHhcCCcEEEeec--chHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHHHHHH
Confidence 999999999997542 3322333344555555544332 112344456799999999999999999999988887764
No 228
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.44 E-value=0.0012 Score=56.95 Aligned_cols=99 Identities=30% Similarity=0.407 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCEEEEecC-CHHHHHHHHHcCCcEEEEec---------c------------ccc--------------
Q 021739 155 KDVKWLQTITSLPILVKGVL-TAEDASLAIQYGAAGIIVSN---------H------------GAR-------------- 198 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~-~~e~a~~~~~~G~d~i~v~~---------~------------gg~-------------- 198 (308)
..|++|++.+.+||..|.+. ..-+++.+...|+|+|.=|- | |-+
T Consensus 68 ~mIKei~~aVsiPVMAk~RiGHFVEAQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAA 147 (296)
T KOG1606|consen 68 RMIKEIKNAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAA 147 (296)
T ss_pred HHHHHHHHhccchhhhhhhhhhhhHHHHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchh
Confidence 68999999999999999874 56789999999999997431 0 100
Q ss_pred ----CCCCC-----------------------c-------------chHHHHHHHHHHccCCCeE--EEecCCCCHHHHH
Q 021739 199 ----QLDYV-----------------------P-------------ATVMALEEVVQAAKGRVPV--FLDGGVRRGTDVF 236 (308)
Q Consensus 199 ----~~~~~-----------------------~-------------~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~d~~ 236 (308)
..+.+ . ...+.+.+..+ .+++|| ++.||+.|+.|+.
T Consensus 148 MIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q--~GrlPVV~FAaGGvaTPADAA 225 (296)
T KOG1606|consen 148 MIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQ--LGRLPVVNFAAGGVATPADAA 225 (296)
T ss_pred hheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHH--cCCCceEEecccCcCChhHHH
Confidence 00000 0 00111111111 146776 6899999999999
Q ss_pred HHHHcCCCEEEEchHHHHh
Q 021739 237 KALALGASGVFVGRPVPFS 255 (308)
Q Consensus 237 k~l~~GAd~V~ig~~~l~~ 255 (308)
-++.+|||.|.+|+.++..
T Consensus 226 LmMQLGCdGVFVGSgiFks 244 (296)
T KOG1606|consen 226 LMMQLGCDGVFVGSGIFKS 244 (296)
T ss_pred HHHHcCCCeEEeccccccC
Confidence 9999999999999987753
No 229
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.43 E-value=0.0022 Score=57.87 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=57.6
Q ss_pred CHHH-HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHc--CCCEEEEchH
Q 021739 175 TAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL--GASGVFVGRP 251 (308)
Q Consensus 175 ~~e~-a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~--GAd~V~ig~~ 251 (308)
++.+ +.+..+.|++.|.+..-..-....+ +.++.+.++.+.. ++|||++|||++.+|+.+...+ |...+.+|++
T Consensus 164 ~~~e~~~~~~~~g~~eii~TdI~rDGtl~G-~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkA 240 (262)
T PLN02446 164 AVDEETLEFLAAYCDEFLVHGVDVEGKRLG-IDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSA 240 (262)
T ss_pred CHHHHHHHHHHhCCCEEEEEEEcCCCcccC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEee
Confidence 3444 6889999999998765321111122 4677788887765 7999999999999999998887 5788999999
Q ss_pred HH
Q 021739 252 VP 253 (308)
Q Consensus 252 ~l 253 (308)
+.
T Consensus 241 l~ 242 (262)
T PLN02446 241 LD 242 (262)
T ss_pred HH
Confidence 83
No 230
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=97.41 E-value=0.044 Score=48.40 Aligned_cols=187 Identities=17% Similarity=0.123 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHcCCceeecCCC------CCC----HHHHhccCC--CCceEEeeecCCchHHHHHHHHHHHcCCcEEEEe
Q 021739 29 GECATARAASAAGTIMTLSSWA------TSS----VEEVSSTGP--GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 96 (308)
Q Consensus 29 ~~~~~a~~a~~~g~~~~~s~~~------~~~----~e~i~~~~~--~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~ 96 (308)
+|..-.+.+.+.|.--.|||.- ..+ ++++++..+ ++.++|.. ..|.+.+.+-.+++...+-+ +.|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~qv~-~~d~e~mi~eA~~l~~~~~n-v~IK 85 (220)
T PRK12655 8 ANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLPRLQKAIGGEGILFAQTM-SRDAQGMVEEAKRLRNAIPG-IVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCCEEEEEe-eCCHHHHHHHHHHHHHhCCC-EEEE
Confidence 3556666677777766677652 112 344554432 46788997 67776666555655554433 4443
Q ss_pred cCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH
Q 021739 97 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA 176 (308)
Q Consensus 97 ~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~ 176 (308)
+ |.. . . .++.++.+++. ++++-+=.+.+.
T Consensus 86 I--P~T------------------~----------------~--------------Gl~Ai~~L~~~-GI~vn~T~vfs~ 114 (220)
T PRK12655 86 I--PVT------------------A----------------E--------------GLAAIKKLKKE-GIPTLGTAVYSA 114 (220)
T ss_pred e--CCC------------------H----------------H--------------HHHHHHHHHHC-CCceeEeEecCH
Confidence 3 321 0 0 02455666553 788877778999
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
+.+..+..+|+++|...- ||-.+.+......+.++.+.+ ..+..|++ ..+++..++.+++..|||.+-+.-.++
T Consensus 115 ~Qa~~Aa~aGa~yIspyv--gR~~~~g~dg~~~i~~~~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12655 115 AQGLLAALAGAKYVAPYV--NRVDAQGGDGIRMVQELQTLLEMHAPESMVLA-ASFKTPRQALDCLLAGCQSITLPLDVA 191 (220)
T ss_pred HHHHHHHHcCCeEEEeec--chHhHcCCCHHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 999999999999887542 221122222344444443332 22444444 569999999999999999999999888
Q ss_pred HhcccCC--HHHHHHHHHHH
Q 021739 254 FSLAVDG--EAGVRKVLQML 271 (308)
Q Consensus 254 ~~~~~~G--~~~v~~~i~~l 271 (308)
..+...- .++++++.+.|
T Consensus 192 ~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 192 QQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred HHHHcCCChHHHHHHHHHHH
Confidence 7764322 24555555444
No 231
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.40 E-value=0.0011 Score=58.98 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+.|+...+.|++.+.+..-.+. ..+.+.....+.++.+.+ .+|+...|||++.+|+.+++.+||+.|.+|+..+..
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~ 108 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALED 108 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHC
T ss_pred HHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhc
Confidence 5677888899999988642221 112344667788887776 599999999999999999999999999999988763
No 232
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.39 E-value=0.0026 Score=58.08 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 154 WKDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 154 ~~~i~~ir~~~~--~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
.+.++++|+..+ .+|.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+.++.+.++-++|||.
T Consensus 181 ~~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI~- 248 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRIT- 248 (281)
T ss_pred HHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCCC-
Confidence 356888887754 44443 457899999999999999998763 3466666666666678999999997
Q ss_pred HHHHHHHHHcCCCEEEEchHHH
Q 021739 232 GTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 232 ~~d~~k~l~~GAd~V~ig~~~l 253 (308)
.+.+.++...|+|.+.+|....
T Consensus 249 ~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 249 PETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHHhcCCCEEEeChhhc
Confidence 8899999899999999998654
No 233
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.38 E-value=0.0011 Score=59.08 Aligned_cols=73 Identities=15% Similarity=0.065 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCcEEEEecc--cccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 177 EDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.++++.+.|+..|.+..- -|+. .+ +.++.+..+.+. ..|++++|||++.+|+.++..+|+++|.+|+++..
T Consensus 150 e~~~~l~~~g~~~ii~tdI~~dGt~--~G-~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 150 DGIKKVNELELLGIIFTYISNEGTT--KG-IDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred HHHHHHHhcCCCEEEEecccccccC--cC-cCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 5678899999988877642 2221 23 456667666543 34699999999999999999999999999999875
Q ss_pred h
Q 021739 255 S 255 (308)
Q Consensus 255 ~ 255 (308)
+
T Consensus 224 g 224 (232)
T PRK13586 224 G 224 (232)
T ss_pred C
Confidence 3
No 234
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.37 E-value=0.0019 Score=57.46 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=51.3
Q ss_pred cCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCC-eEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 185 YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRV-PVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 185 ~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i-pvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.|...+.+...++. +.+...+.+.++++.+ +. |++..|||++.+++.+++..|||.|.+|+.+..
T Consensus 153 ~g~~~vYle~gs~~---g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 153 LGMPIVYLEYGGGA---GDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred cCCCeEEEECCCCC---CCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 47666666543322 3445678888888765 56 999999999999999999999999999999885
No 235
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.35 E-value=0.0013 Score=58.68 Aligned_cols=74 Identities=24% Similarity=0.255 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
.+.|+...+.|+|.+.+..-.+. .+.......+.++.+.+ .+|+...|||++.+|+.+++.+||+-|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 36688889999999998654332 13445677788887665 6899999999999999999999999999999654
No 236
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.35 E-value=0.0018 Score=56.98 Aligned_cols=84 Identities=25% Similarity=0.166 Sum_probs=62.7
Q ss_pred cccCHHHHHHHHHhc----CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEE
Q 021739 150 RSLNWKDVKWLQTIT----SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 225 (308)
Q Consensus 150 ~~~~~~~i~~ir~~~----~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (308)
.+...+.|+++++.+ ++-|.+..+.+.++++.+.++|+++++ +-+. ..+.+.... . .++|++-
T Consensus 48 ~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv-sP~~---------~~~v~~~~~-~--~~i~~iP 114 (213)
T PRK06552 48 NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV-SPSF---------NRETAKICN-L--YQIPYLP 114 (213)
T ss_pred CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHHHH-H--cCCCEEC
Confidence 334567899998876 255777778999999999999999996 2211 122233222 2 2677777
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEE
Q 021739 226 DGGVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 226 ~GGI~~~~d~~k~l~~GAd~V~i 248 (308)
|..|+.++..++..|||.+.+
T Consensus 115 --G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 115 --GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred --CcCCHHHHHHHHHcCCCEEEE
Confidence 999999999999999999998
No 237
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.34 E-value=0.056 Score=47.77 Aligned_cols=186 Identities=16% Similarity=0.100 Sum_probs=113.3
Q ss_pred HHHHHHHHHHcCCceeecCCC-------CCCH----HHHhccCC--CCceEEeeecCCchHHHHHHHHHH-HcCCcEEEE
Q 021739 30 ECATARAASAAGTIMTLSSWA-------TSSV----EEVSSTGP--GIRFFQLYVTKHRNVDAQLVKRAE-RAGFKAIAL 95 (308)
Q Consensus 30 ~~~~a~~a~~~g~~~~~s~~~-------~~~~----e~i~~~~~--~~~~~Ql~~~~d~~~~~~~~~~~~-~~g~~~i~i 95 (308)
|..-.+.+.+.|.--.+||.- .... ++++...+ .+..+|.+ ..|.+.+.+..+++. ..| +.+.|
T Consensus 9 d~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~~i~~~i~~~~~vs~ev~-~~~~~~mi~eA~~l~~~~~-~nv~V 86 (222)
T PRK12656 9 NLEAIKKWHEILPLAGVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQVV-AQDYEGILKDAHEIRRQCG-DDVYI 86 (222)
T ss_pred CHHHHHHHHhcCCcceEeCCHHHHHhcCCCCHHHHHHHHHHHhCCCCcEEEEEE-ECCHHHHHHHHHHHHHHhC-CCEEE
Confidence 556666777888777777651 1133 34444433 37889998 777776666666554 344 33334
Q ss_pred ecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCC
Q 021739 96 TVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLT 175 (308)
Q Consensus 96 ~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~ 175 (308)
-+ |.. . . .++.++.+++. ++++-+=.+.+
T Consensus 87 KI--P~T------------------~----------------~--------------Gl~Ai~~L~~~-Gi~vn~T~ifs 115 (222)
T PRK12656 87 KV--PVT------------------P----------------A--------------GLAAIKTLKAE-GYHITATAIYT 115 (222)
T ss_pred Ee--CCC------------------H----------------H--------------HHHHHHHHHHC-CCceEEeeeCC
Confidence 32 321 0 0 12455666543 78888777899
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~ 252 (308)
.+.+..+.++|+++|... -||-.+.+......+.++.+.+ ..+..|++ -.+|+..++.+++.+|||.+-+.-.+
T Consensus 116 ~~Qa~~Aa~aGa~yvsPy--vgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~a~~~G~d~vTvp~~v 192 (222)
T PRK12656 116 VFQGLLAIEAGADYLAPY--YNRMENLNIDSNAVIGQLAEAIDRENSDSKILA-ASFKNVAQVNKAFALGAQAVTAGPDV 192 (222)
T ss_pred HHHHHHHHHCCCCEEecc--cchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEE-EecCCHHHHHHHHHcCCCEEecCHHH
Confidence 999999999999998653 2332222222234444443332 23455555 56999999999999999999999888
Q ss_pred HHhcccCC--HHHHHHHHHHH
Q 021739 253 PFSLAVDG--EAGVRKVLQML 271 (308)
Q Consensus 253 l~~~~~~G--~~~v~~~i~~l 271 (308)
+..+...- .++++++.+.|
T Consensus 193 l~~l~~~p~t~~~~~~F~~dw 213 (222)
T PRK12656 193 FEAAFAMPSIQKAVDDFADDW 213 (222)
T ss_pred HHHHhcCCcHHHHHHHHHHHH
Confidence 87653221 23444444443
No 238
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.33 E-value=0.0027 Score=53.80 Aligned_cols=89 Identities=25% Similarity=0.231 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcC-CC-EEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHH---HccCCCeEEEecC
Q 021739 154 WKDVKWLQTITS-LP-ILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQ---AAKGRVPVFLDGG 228 (308)
Q Consensus 154 ~~~i~~ir~~~~-~P-v~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~---~~~~~ipvia~GG 228 (308)
.+.++++++..+ .+ |.+ .+-+.+++..+.++|+|.|.+.+. +.+.+.++.+ ....++.+.++||
T Consensus 67 ~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~----------~~~~~~~~v~~l~~~~~~v~ie~SGG 135 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNM----------SPEDLKEAVEELRELNPRVKIEASGG 135 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-----------CHHHHHHHHHHHHHHTTTSEEEEESS
T ss_pred HHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCc----------CHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 355778877653 33 444 557889999999999999999874 2244444433 4455799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 229 VRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
|. .+++.++...|+|.+.+|+....
T Consensus 136 I~-~~ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 136 IT-LENIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp SS-TTTHHHHHHTT-SEEEECHHHHS
T ss_pred CC-HHHHHHHHhcCCCEEEcChhhcC
Confidence 96 78899999999999999987654
No 239
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.30 E-value=0.034 Score=55.14 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
.+.++.+.++|+|.|.+....|.+ ...|+.+.++++.. ++++||+ |+|.|.+++..++++|||+|.+|
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~----~~~~~~i~~ik~~~-p~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDS----IYQLEMIKYIKKTY-PELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCc----HHHHHHHHHHHHhC-CCCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 467899999999999997644321 23467788887654 2455555 88999999999999999999765
No 240
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.28 E-value=0.0039 Score=55.58 Aligned_cols=74 Identities=22% Similarity=0.153 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.|+...+.|+|.+++..-.+.. +..+..+.+.++.+.. ..|+...|||+|.+|+.+++..||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 56888889999999986543321 2344567777776632 24999999999999999999999999999997765
No 241
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.25 E-value=0.0022 Score=55.94 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=52.1
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+..+...|++.|.+....|. ..+.+.+.+.++++.+ ++|++..||||+.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45666789999988653333 1223467788887776 799999999999999999989999999987
No 242
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.23 E-value=0.0049 Score=56.44 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=68.6
Q ss_pred HHHHHHHHhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCH
Q 021739 155 KDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 232 (308)
Q Consensus 155 ~~i~~ir~~~~--~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (308)
+.++++|+..+ .+|.| .+-+.|++..+.++|+|.|.+.|- +.+.+.++.+.++.++.+.++|||. .
T Consensus 185 ~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI~-~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNID-M 252 (290)
T ss_pred HHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCCC-H
Confidence 55888887654 34443 457899999999999999998763 3556666666555678999999997 8
Q ss_pred HHHHHHHHcCCCEEEEchHHH
Q 021739 233 TDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 233 ~d~~k~l~~GAd~V~ig~~~l 253 (308)
+.+.++..+|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 999999899999999998654
No 243
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.23 E-value=0.0047 Score=56.41 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=68.0
Q ss_pred HHHHHHHHhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCH
Q 021739 155 KDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 232 (308)
Q Consensus 155 ~~i~~ir~~~~--~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (308)
+.++++|+..+ .+|.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+.++.+..+.++|||. .
T Consensus 181 ~av~~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI~-~ 248 (281)
T PRK06543 181 EALRHVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNVN-L 248 (281)
T ss_pred HHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCCC-H
Confidence 55777877654 44443 567899999999999999998774 3455666666555678899999997 8
Q ss_pred HHHHHHHHcCCCEEEEchHHH
Q 021739 233 TDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 233 ~d~~k~l~~GAd~V~ig~~~l 253 (308)
+.+.++...|+|.+.+|++..
T Consensus 249 ~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 249 NTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 999999999999999998654
No 244
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.22 E-value=0.0031 Score=54.88 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=61.0
Q ss_pred ccCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCC
Q 021739 151 SLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 229 (308)
Q Consensus 151 ~~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (308)
+...+.|+++++++ ++-|.+..+.+.++++.+.++|+++++ |-+. ..+.+...+ .. ++|.+- |+
T Consensus 40 p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv-SP~~---------~~~vi~~a~-~~--~i~~iP--G~ 104 (201)
T PRK06015 40 PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV-SPGT---------TQELLAAAN-DS--DVPLLP--GA 104 (201)
T ss_pred ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHHHH-Hc--CCCEeC--CC
Confidence 33467788888776 466777788999999999999999995 2211 123333332 22 567666 99
Q ss_pred CCHHHHHHHHHcCCCEEEE
Q 021739 230 RRGTDVFKALALGASGVFV 248 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~i 248 (308)
.|+.++..++.+||+.|=+
T Consensus 105 ~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 105 ATPSEVMALREEGYTVLKF 123 (201)
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999998754
No 245
>PRK06801 hypothetical protein; Provisional
Probab=97.22 E-value=0.048 Score=50.12 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=72.9
Q ss_pred CHHHHHHHH-HcCCcEEEEecccccCCCCC--cchHHHHHHHHHHccCCCeEEEecC--CCCHHHHHHHHHcCCCEEEEc
Q 021739 175 TAEDASLAI-QYGAAGIIVSNHGARQLDYV--PATVMALEEVVQAAKGRVPVFLDGG--VRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 175 ~~e~a~~~~-~~G~d~i~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvia~GG--I~~~~d~~k~l~~GAd~V~ig 249 (308)
+++++.... +.|+|++-++...-+..+.+ ...++.|.++++.+ ++|++.-|| |. .+++.+++.+|++-|-++
T Consensus 157 ~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 157 DPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINFY 233 (286)
T ss_pred CHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEeh
Confidence 568888777 89999999854322222222 24678888888776 689999998 77 688999999999999999
Q ss_pred hHHHHhcc-------cCC------H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 250 RPVPFSLA-------VDG------E-AGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 250 ~~~l~~~~-------~~G------~-~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
+.+..+.. ... . .-.....+.+++.++..|+..|..
T Consensus 234 T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 234 TGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred hHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 98765421 011 1 112333345666666777776643
No 246
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.22 E-value=0.0094 Score=52.34 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHcCCcEEEEecccccCCC---CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 174 LTAEDASLAIQYGAAGIIVSNHGARQLD---YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 174 ~~~e~a~~~~~~G~d~i~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
-+.+++..+.+.|+|++.++.-..+... ..+..++.+.++.+.. .++||++-|||. .+++.+.++.||++|.+-+
T Consensus 110 H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvis 187 (211)
T PRK03512 110 HDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVVS 187 (211)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEhh
Confidence 4678888999999999998753322211 1223455566655442 269999999998 8999999999999999999
Q ss_pred HHHHh
Q 021739 251 PVPFS 255 (308)
Q Consensus 251 ~~l~~ 255 (308)
.+..+
T Consensus 188 ai~~~ 192 (211)
T PRK03512 188 AITQA 192 (211)
T ss_pred HhhCC
Confidence 98753
No 247
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.22 E-value=0.002 Score=56.72 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=54.2
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
|..+...|...|.+. ..|. ....+.+.++++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 141 A~aae~~g~~ivyLe-~SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YSGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeC-CCCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 566677888888776 2222 234667777776542 68999999999999999999999999999999875
No 248
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.21 E-value=0.17 Score=46.40 Aligned_cols=108 Identities=16% Similarity=0.280 Sum_probs=75.2
Q ss_pred CCHHHHHHHHH-cCCcEEEEec---ccccCCCCCcchHHHHHHHHHHccCCCeEEEec--CCCCHHHHHHHHHcCCCEEE
Q 021739 174 LTAEDASLAIQ-YGAAGIIVSN---HGARQLDYVPATVMALEEVVQAAKGRVPVFLDG--GVRRGTDVFKALALGASGVF 247 (308)
Q Consensus 174 ~~~e~a~~~~~-~G~d~i~v~~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G--GI~~~~d~~k~l~~GAd~V~ 247 (308)
.+++++..+.+ .|+|++.++. ||-. .....-.++.|.++++.+ ++|+++=| ||. .+++.+++..|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~-~~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKY-KGEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCcccccc-CCCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEE
Confidence 37889988886 9999999753 2211 111233577888888776 79999999 987 6889999999999999
Q ss_pred EchHHHHhcc-------cC-----C-HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 248 VGRPVPFSLA-------VD-----G-EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 248 ig~~~l~~~~-------~~-----G-~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
+++-+..+.. .. . ..-+....+.+.+.++..|+.+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9997755321 00 1 1223344556677777777777753
No 249
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.17 E-value=0.0024 Score=56.59 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=45.6
Q ss_pred cCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 185 YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 185 ~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
.|...|-+-...|+. ++. ...+.++++.+ .++|+|..|||||.+++.+++..|||.|.+|..|-..
T Consensus 152 ~g~~~iYLEaGSGa~---~~v-~~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 152 LGMPIIYLEAGSGAY---GPV-PEEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED 217 (230)
T ss_dssp TT-SEEEEE--TTSS---S-H-HHHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH
T ss_pred hCCCEEEEEeCCCCC---CCc-cHHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc
Confidence 688888876533321 222 24444555554 4799999999999999999999999999999998753
No 250
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.16 E-value=0.0076 Score=59.77 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=65.2
Q ss_pred HHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEecccccCC--CCCcchHHHHHHHHHHccCCCeEEEecCCCCHHH
Q 021739 158 KWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 234 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 234 (308)
...|+..+-..++... -+.+++..+.+.|+|+|.++--.-+.. ...+..++.+.++.+.. .+||++-|||. +++
T Consensus 381 ~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~ 457 (502)
T PLN02898 381 RLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASN 457 (502)
T ss_pred HHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHH
Confidence 3444443323344433 578889999999999998754222211 11122466676665544 79999999996 999
Q ss_pred HHHHHHcCCC---EEEEchHHHH
Q 021739 235 VFKALALGAS---GVFVGRPVPF 254 (308)
Q Consensus 235 ~~k~l~~GAd---~V~ig~~~l~ 254 (308)
+.+++.+||+ +|.+++.+..
T Consensus 458 ~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 458 AASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHHcCCCcCceEEEEeHHhc
Confidence 9999999999 9999999875
No 251
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.16 E-value=0.0029 Score=54.84 Aligned_cols=84 Identities=27% Similarity=0.207 Sum_probs=59.2
Q ss_pred ccCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCC
Q 021739 151 SLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 229 (308)
Q Consensus 151 ~~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (308)
+...+.|+.+++++ ++-|.+..+.+.++++.+.++|+++++- -+. +.+.+....+. ++|++- |+
T Consensus 44 ~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS-P~~---------~~~v~~~~~~~---~i~~iP--G~ 108 (196)
T PF01081_consen 44 PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS-PGF---------DPEVIEYAREY---GIPYIP--GV 108 (196)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE-SS-----------HHHHHHHHHH---TSEEEE--EE
T ss_pred ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC-CCC---------CHHHHHHHHHc---CCcccC--Cc
Confidence 33467888888776 5667777889999999999999999962 211 22333333332 688887 89
Q ss_pred CCHHHHHHHHHcCCCEEEEc
Q 021739 230 RRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig 249 (308)
.|+.++..++.+||+.|=+=
T Consensus 109 ~TptEi~~A~~~G~~~vK~F 128 (196)
T PF01081_consen 109 MTPTEIMQALEAGADIVKLF 128 (196)
T ss_dssp SSHHHHHHHHHTT-SEEEET
T ss_pred CCHHHHHHHHHCCCCEEEEe
Confidence 99999999999999998753
No 252
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.14 E-value=0.05 Score=48.96 Aligned_cols=184 Identities=13% Similarity=0.152 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCceeecCC---------CCC----C-----------HHHHhccCCC-CceEEeeecCCc-hHHHHHHHHH
Q 021739 32 ATARAASAAGTIMTLSSW---------ATS----S-----------VEEVSSTGPG-IRFFQLYVTKHR-NVDAQLVKRA 85 (308)
Q Consensus 32 ~~a~~a~~~g~~~~~s~~---------~~~----~-----------~e~i~~~~~~-~~~~Ql~~~~d~-~~~~~~~~~~ 85 (308)
-.|+.+.+-|+.+.+.-- +|. + -+|+.+..++ |.++=+. ..|| ..+...++++
T Consensus 26 lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPViaGv~-atDP~~~~~~fl~~l 104 (268)
T PF09370_consen 26 LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIAGVC-ATDPFRDMDRFLDEL 104 (268)
T ss_dssp HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE--TT-TT--HHHHHHHH
T ss_pred hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEEEec-CcCCCCcHHHHHHHH
Confidence 358899999999877421 111 1 1345555443 7777777 6775 6777888999
Q ss_pred HHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhh-cccccCHHHHHHHHHhc
Q 021739 86 ERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQ-IDRSLNWKDVKWLQTIT 164 (308)
Q Consensus 86 ~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~i~~ir~~~ 164 (308)
++.||.++ .|. |.-+.-.-..| ..+-.. .-.+.-.+.|+..++.
T Consensus 105 k~~Gf~GV-~Nf--PTvgliDG~fR-------------------------------~~LEe~Gmgy~~EVemi~~A~~~- 149 (268)
T PF09370_consen 105 KELGFSGV-QNF--PTVGLIDGQFR-------------------------------QNLEETGMGYDREVEMIRKAHEK- 149 (268)
T ss_dssp HHHT-SEE-EE---S-GGG--HHHH-------------------------------HHHHHTT--HHHHHHHHHHHHHT-
T ss_pred HHhCCceE-EEC--CcceeeccHHH-------------------------------HHHHhcCCCHHHHHHHHHHHHHC-
Confidence 99999987 464 65421111100 111000 0001113445555443
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEecc---cccC-CCCCcc---hHHHHHHHHH---HccCC-CeEEEecCCCCHH
Q 021739 165 SLPILVKGVLTAEDASLAIQYGAAGIIVSNH---GARQ-LDYVPA---TVMALEEVVQ---AAKGR-VPVFLDGGVRRGT 233 (308)
Q Consensus 165 ~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~---gg~~-~~~~~~---~~~~l~~i~~---~~~~~-ipvia~GGI~~~~ 233 (308)
+ -+.+-.+.++++++.+.++|+|.|+++-. +|+. .....+ ..+.+.++.+ .+.++ +.++-.|-|.+++
T Consensus 150 g-l~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~ 228 (268)
T PF09370_consen 150 G-LFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPE 228 (268)
T ss_dssp T--EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHH
T ss_pred C-CeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHH
Confidence 2 13334457999999999999999998642 2211 111111 1122333333 33344 4455555699999
Q ss_pred HHHHHHH--cCCCEEEEchHH
Q 021739 234 DVFKALA--LGASGVFVGRPV 252 (308)
Q Consensus 234 d~~k~l~--~GAd~V~ig~~~ 252 (308)
|+...+. .|++...=||.+
T Consensus 229 D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 229 DAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HHHHHHHH-TTEEEEEESTTT
T ss_pred HHHHHHhcCCCCCEEecccch
Confidence 9999998 358888777765
No 253
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.13 E-value=0.0088 Score=57.62 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=62.6
Q ss_pred EEEEec-CCHHHHHHHHHcCCcEEEEecccccCC---CCCcchHHHHHHHHHHcc-------CCCeEEEecCCCCHHHHH
Q 021739 168 ILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQL---DYVPATVMALEEVVQAAK-------GRVPVFLDGGVRRGTDVF 236 (308)
Q Consensus 168 v~vK~~-~~~e~a~~~~~~G~d~i~v~~~gg~~~---~~~~~~~~~l~~i~~~~~-------~~ipvia~GGI~~~~d~~ 236 (308)
.+++.. -+.+++.++.+.|+|+|.++.-.-+.. ...+..++.+.++.+.+. ..+|+++-||| +.+++.
T Consensus 301 ~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~ 379 (437)
T PRK12290 301 IRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAE 379 (437)
T ss_pred CEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHH
Confidence 344444 467889999999999998864322221 122334566665554432 26999999999 699999
Q ss_pred HHHHcCCCEEEEchHHHHh
Q 021739 237 KALALGASGVFVGRPVPFS 255 (308)
Q Consensus 237 k~l~~GAd~V~ig~~~l~~ 255 (308)
+++..||+.|.+=|.++.+
T Consensus 380 ~vl~aGa~GVAVVSAI~~A 398 (437)
T PRK12290 380 QVWQCGVSSLAVVRAITLA 398 (437)
T ss_pred HHHHcCCCEEEEehHhhcC
Confidence 9999999999999998853
No 254
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.11 E-value=0.0077 Score=52.48 Aligned_cols=137 Identities=19% Similarity=0.201 Sum_probs=83.4
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEec-CCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTV-DTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDR 150 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~-~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 150 (308)
..|+..+.+.+++++++|++.+=+.+ |. .| + .+-
T Consensus 8 ~ad~~~l~~~i~~l~~~g~d~lHiDiMDg------------~f------------------------------v---pn~ 42 (201)
T PF00834_consen 8 SADFLNLEEEIKRLEEAGADWLHIDIMDG------------HF------------------------------V---PNL 42 (201)
T ss_dssp GS-GGGHHHHHHHHHHTT-SEEEEEEEBS------------SS------------------------------S---SSB
T ss_pred hCCHHHHHHHHHHHHHcCCCEEEEeeccc------------cc------------------------------C---Ccc
Confidence 45777888999999999999864432 10 00 0 011
Q ss_pred ccCHHHHHHHHHhcCCCEEEEec-CCH-HHHHHHHHcCCcEEEEeccc------------------------ccC-----
Q 021739 151 SLNWKDVKWLQTITSLPILVKGV-LTA-EDASLAIQYGAAGIIVSNHG------------------------ARQ----- 199 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~~Pv~vK~~-~~~-e~a~~~~~~G~d~i~v~~~g------------------------g~~----- 199 (308)
.+..+.++++|+.+++|+=+-+- .++ ...+.+.++|+|.|.++-.. ++.
T Consensus 43 ~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~ 122 (201)
T PF00834_consen 43 TFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELE 122 (201)
T ss_dssp -B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGT
T ss_pred cCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHH
Confidence 12357788998888888777653 344 34778888899988886411 010
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHc---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 200 -----LD-----------YV----PATVMALEEVVQAA---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 200 -----~~-----------~~----~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.| +| +...+-+.++++.. ..++.|.++|||+ .+.+.++.++|||.+.+||.++.
T Consensus 123 ~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 123 PYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIFK 199 (201)
T ss_dssp TTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEESHHHHT
T ss_pred HHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhC
Confidence 01 11 22334444444332 2369999999998 46788888999999999997654
No 255
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.10 E-value=0.006 Score=55.07 Aligned_cols=71 Identities=30% Similarity=0.193 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+.|+...+.|++.+++..-.+ +.+.....+.++.+ + .+||-..||||+ +++.+++.+||+-|.+|+..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4678999999999999764332 22344677788776 5 599999999996 9999999999999999998875
No 256
>PRK12376 putative translaldolase; Provisional
Probab=97.09 E-value=0.16 Score=45.30 Aligned_cols=177 Identities=16% Similarity=0.133 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHcCCceeecCCC-------CCCHH----HHhccCC-CCceEEeeecCCchHHHHHHHHHHHcCCcEEEEe
Q 021739 29 GECATARAASAAGTIMTLSSWA-------TSSVE----EVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 96 (308)
Q Consensus 29 ~~~~~a~~a~~~g~~~~~s~~~-------~~~~e----~i~~~~~-~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~ 96 (308)
+|..-.+.+.+.|.--.+||.- ..+.+ +++...+ ++..+|+. ..|.+.+.+..+++.+.+-+ +.|-
T Consensus 13 Ad~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~mv~eA~~l~~~~~n-v~VK 90 (236)
T PRK12376 13 ADLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVF-ADDLETMEKEAEKIASLGEN-VYVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHHHHHhCCC-eEEE
Confidence 3667777788888777777652 11333 3444443 47888986 77777666666666555543 4444
Q ss_pred cCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH
Q 021739 97 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA 176 (308)
Q Consensus 97 ~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~ 176 (308)
+ |.. . . .+ ...++.++.+.+. ++++-+=.++++
T Consensus 91 I--P~T------------------~--~-------------~G-----------~~gl~Ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T PRK12376 91 I--PIT------------------N--T-------------KG-----------ESTIPLIKKLSAD-GVKLNVTAIFTI 123 (236)
T ss_pred E--CCc------------------C--c-------------cc-----------hhHHHHHHHHHHC-CCeEEEeeecCH
Confidence 3 321 0 0 00 0013456666554 788877778899
Q ss_pred HHHHHHHHc----CCcEEEEecccccCCCCCcchHHHHHHHHHHcc--CCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 177 EDASLAIQY----GAAGIIVSNHGARQLDYVPATVMALEEVVQAAK--GRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 177 e~a~~~~~~----G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
..+..+.++ |+++|...- ||-.+.+......+.++.+.+. .+..|++ ..||++.++.+++.+|||.+-+.-
T Consensus 124 ~Qa~~a~~A~ag~ga~yispfv--gR~dd~g~D~~~~i~~i~~i~~~~~~tkILa-ASiR~~~~v~~a~~~Gad~vTvp~ 200 (236)
T PRK12376 124 EQVKEVVDALTPGVPAIVSVFA--GRIADTGVDPVPLMKEALAICHSKPGVELLW-ASPREVYNIIQADQLGCDIITVTP 200 (236)
T ss_pred HHHHHHHHHhcCCCCeEEEEec--chhhhcCCCcHHHHHHHHHHHHhCCCcEEEE-EecCCHHHHHHHHHcCCCEEEcCH
Confidence 998755555 699887542 3322333333445555544332 2455665 469999999999999999999998
Q ss_pred HHHHhcc
Q 021739 251 PVPFSLA 257 (308)
Q Consensus 251 ~~l~~~~ 257 (308)
.++..+.
T Consensus 201 ~v~~~l~ 207 (236)
T PRK12376 201 DVLKKLP 207 (236)
T ss_pred HHHHHHH
Confidence 8877654
No 257
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.09 E-value=0.0066 Score=55.76 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=67.4
Q ss_pred HHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHH
Q 021739 155 KDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 233 (308)
Q Consensus 155 ~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (308)
+.++++|+.. ..||.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+..+.++.+.++|||. .+
T Consensus 197 ~av~~~r~~~~~~kIeV-Ev~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI~-~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVPVEV-EVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNVT-LE 264 (296)
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 5577777654 356443 557899999999999999998763 2355666655555679999999997 88
Q ss_pred HHHHHHHcCCCEEEEchHHH
Q 021739 234 DVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 234 d~~k~l~~GAd~V~ig~~~l 253 (308)
.+.++..+|+|.+.+|.+.-
T Consensus 265 ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 265 TLREFAETGVDFISVGALTK 284 (296)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 99999899999999998543
No 258
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.05 E-value=0.0046 Score=55.44 Aligned_cols=74 Identities=22% Similarity=0.152 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.|+...+.|+|.+.+..-.+. ..+.+...+.+.++.+.+ .|+...|||+|.+|+.+++.+||+-|.+|+..+.
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~ 107 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhC
Confidence 5688888999999987643221 112345677788887654 6999999999999999999999999999997654
No 259
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.04 E-value=0.009 Score=54.81 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=66.2
Q ss_pred HHHHHHHHhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHH
Q 021739 155 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 233 (308)
Q Consensus 155 ~~i~~ir~~~~-~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (308)
+.++++|+... .+|.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+.++.++.+-++|||. .+
T Consensus 194 ~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGIt-~~ 261 (294)
T PRK06978 194 AALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGVN-FD 261 (294)
T ss_pred HHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 44677776432 34333 457899999999999999998774 3455656655555578999999997 88
Q ss_pred HHHHHHHcCCCEEEEchHHH
Q 021739 234 DVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 234 d~~k~l~~GAd~V~ig~~~l 253 (308)
.+.++..+|+|.+.+|.+..
T Consensus 262 ni~~yA~tGVD~IS~galth 281 (294)
T PRK06978 262 TVRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 99998899999999998654
No 260
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=97.04 E-value=0.22 Score=44.45 Aligned_cols=176 Identities=11% Similarity=0.053 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHcCCceeecCCC------C-CCHHHHh-----ccCCCCceEEeeecCCchHHHHHHHHHHHcCCcEEEEe
Q 021739 29 GECATARAASAAGTIMTLSSWA------T-SSVEEVS-----STGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 96 (308)
Q Consensus 29 ~~~~~a~~a~~~g~~~~~s~~~------~-~~~e~i~-----~~~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~ 96 (308)
+|..-.+.+.+.|.--.+||.- . ..++++. ...+++..+|++ ..|.+.+.+..+++...+. .+.|-
T Consensus 13 Ad~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~m~~eA~~l~~~~~-nv~VK 90 (236)
T TIGR02134 13 ANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVF-ADDLDEMEKEARYIASWGN-NVNVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEe-cCCHHHHHHHHHHHHhcCC-CeEEE
Confidence 3566777788888777777651 1 1333322 122357899997 7777777666676666664 34454
Q ss_pred cCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCH
Q 021739 97 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA 176 (308)
Q Consensus 97 ~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~ 176 (308)
+ |+. . .+ .+..++.++.+++. ++++-+=.+.+.
T Consensus 91 I--P~T------------------~----------------~~----------G~~~l~ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T TIGR02134 91 I--PVT------------------N----------------TK----------GESTGPLIQKLSAD-GITLNVTALTTI 123 (236)
T ss_pred E--CCc------------------C----------------cc----------cchHHHHHHHHHHC-CCcEEeehcCCH
Confidence 3 321 0 00 00123556677654 788877778899
Q ss_pred HHHHHHH---HcC-CcEEEEecccccCCCCCcchHHHHHHHHHHcc--CCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 177 EDASLAI---QYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAK--GRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 177 e~a~~~~---~~G-~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
..+..+. .+| +++|...- ||-.+.+......+.++.+.+. .+..|++ ..+|++.++.++..+|||.+-+.-
T Consensus 124 ~Qa~~aa~A~~aG~a~yispfv--gR~dd~g~D~~~~i~~i~~i~~~~~~tkILa-AS~R~~~~v~~a~~~Gad~vTvp~ 200 (236)
T TIGR02134 124 EQVEKVCQSFTDGVPGIVSVFA--GRIADTGVDPEPHMREALEIVAQKPGVELLW-ASPRELFNIIQADRIGCDIITCAH 200 (236)
T ss_pred HHHHHHHHHHhCCCCeEEEEec--chhhhcCCCcHHHHHHHHHHHHhCCCcEEEE-EccCCHHHHHHHHHcCCCEEECCH
Confidence 8887644 589 68887643 2322323333444444443332 3566666 459999999999999999999998
Q ss_pred HHHHhc
Q 021739 251 PVPFSL 256 (308)
Q Consensus 251 ~~l~~~ 256 (308)
.++..+
T Consensus 201 ~v~~~l 206 (236)
T TIGR02134 201 DILAKL 206 (236)
T ss_pred HHHHHH
Confidence 888765
No 261
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.03 E-value=0.067 Score=52.72 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+.+..+.++|+|.|.+....|. +....+.+.++++.. ++++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~-p~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALD-PGVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHC-CCCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 5578899999999998765443 233566778887765 3577777 89999999999999999997744
No 262
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.02 E-value=0.036 Score=51.53 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=88.6
Q ss_pred ceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHh
Q 021739 65 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYV 144 (308)
Q Consensus 65 ~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (308)
..+++. ..+++.+.+.++++.+.|++.+-++++..
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~~-------------------------------------------- 160 (316)
T cd03319 126 TDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGGD-------------------------------------------- 160 (316)
T ss_pred eEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCCC--------------------------------------------
Confidence 445655 56777777777877788999998876421
Q ss_pred hhhcccccCHHHHHHHHHhc-CCCEEEEec--CCHHH----HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc
Q 021739 145 ANQIDRSLNWKDVKWLQTIT-SLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA 217 (308)
Q Consensus 145 ~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~~--~~~e~----a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~ 217 (308)
++...+.++.+|+.+ ++++.++.. .+.++ ++.+.+.++++|. +.. .+..++.+.++++.+
T Consensus 161 -----~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iE-------eP~-~~~d~~~~~~L~~~~ 227 (316)
T cd03319 161 -----LEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIE-------QPV-PAGDDDGLAYLRDKS 227 (316)
T ss_pred -----hhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE-------CCC-CCCCHHHHHHHHhcC
Confidence 111246788888876 477877765 34444 4566777888874 100 123567777777655
Q ss_pred cCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchH
Q 021739 218 KGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRP 251 (308)
Q Consensus 218 ~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~ 251 (308)
++||++++.+.+..|+.++++.| +|.|++--.
T Consensus 228 --~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 228 --PLPIMADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred --CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 79999999999999999999965 888887643
No 263
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.02 E-value=0.03 Score=50.42 Aligned_cols=70 Identities=30% Similarity=0.369 Sum_probs=53.9
Q ss_pred HHHHHH-HHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 177 EDASLA-IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 177 e~a~~~-~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.++.+ ...++|+|++++.. .+.+++.+.+.++++.+ .+||+..+|+. .+.+.+.|.. ||++.+|+.|-.
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCCC-HHHHHHHHHh-CCEEEEeeeeee
Confidence 344444 57899999998742 12456788888888877 39999999986 8899887754 999999998754
No 264
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.01 E-value=0.0056 Score=54.03 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=50.7
Q ss_pred cCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 185 YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 185 ~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.|...+-+-..++. +.+...+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 47777776544332 12334667777776652 69999999999999999999999999999998875
No 265
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.01 E-value=0.01 Score=54.40 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=65.8
Q ss_pred HHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHH---ccCCCeEEEecCCC
Q 021739 155 KDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQA---AKGRVPVFLDGGVR 230 (308)
Q Consensus 155 ~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipvia~GGI~ 230 (308)
+.++++|+.. ..||.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+. ...++.+.++|||.
T Consensus 188 ~ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LDnm----------~~e~vk~av~~~~~~~~~v~ieaSGGI~ 256 (289)
T PRK07896 188 AALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLDNF----------PVWQTQEAVQRRDARAPTVLLESSGGLT 256 (289)
T ss_pred HHHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHHhccCCCEEEEEECCCC
Confidence 5577787754 355443 557889999999999999998763 23444444332 24578999999997
Q ss_pred CHHHHHHHHHcCCCEEEEchHHH
Q 021739 231 RGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
.+.+.++..+|+|.+.+|++..
T Consensus 257 -~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 257 -LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred -HHHHHHHHhcCCCEEEeChhhc
Confidence 8999999999999999998765
No 266
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.033 Score=48.13 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCCEE--EEe---------cCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCe
Q 021739 154 WKDVKWLQTITSLPIL--VKG---------VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 222 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~--vK~---------~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 222 (308)
.+.|+++++.+++||+ +|- ..+.++...+.++|++-|.+....+...+ + +.+.+..-.+. --
T Consensus 55 v~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~-~--~~~~~i~~~k~----~~ 127 (229)
T COG3010 55 VEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPD-G--DLEELIARIKY----PG 127 (229)
T ss_pred hhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCc-c--hHHHHHHHhhc----CC
Confidence 5788999999999985 231 14568999999999999988765432211 1 33333222111 22
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEE
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVF 247 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ 247 (308)
..+.-.++|.+|..-|..+|+|.|+
T Consensus 128 ~l~MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 128 QLAMADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred cEEEeccCCHHHHHHHHHcCCcEEe
Confidence 4445578999999999999999975
No 267
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.99 E-value=0.0055 Score=54.98 Aligned_cols=74 Identities=30% Similarity=0.146 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+.++...+.|++.+.+.--.+.. +.....+.+.++.+.+ .+|+...|||||.+|+.+++.+||+-|.+|+..+.
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~ 108 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALE 108 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 34555677889888876432211 2345677888887766 58999999999999999999999999999997654
No 268
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.96 E-value=0.0046 Score=54.25 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=70.2
Q ss_pred CHHHHHHHHHhcCCCEEEEec--C-CHHH-HHHHHHcCCcEEEEecccccC---------------------CCC-----
Q 021739 153 NWKDVKWLQTITSLPILVKGV--L-TAED-ASLAIQYGAAGIIVSNHGARQ---------------------LDY----- 202 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~--~-~~e~-a~~~~~~G~d~i~v~~~gg~~---------------------~~~----- 202 (308)
..+.++++|+..++|+=+|.- . +.+. ++.+.++|+|+++++...+.. ...
T Consensus 43 G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~ 122 (215)
T PRK13813 43 GLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALE 122 (215)
T ss_pred CHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Confidence 457889999876666667864 2 3333 478889999999997632200 000
Q ss_pred -------------------C----cchHHHHHHHHHHccCCCeEEEecCCCCH-HHHHHHHHcCCCEEEEchHHHHhccc
Q 021739 203 -------------------V----PATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGVFVGRPVPFSLAV 258 (308)
Q Consensus 203 -------------------~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~d~~k~l~~GAd~V~ig~~~l~~~~~ 258 (308)
+ ....+-+.++++.....+.+ .+|||+.. .++.+++..|||.+.+||+++.+
T Consensus 123 ~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~--- 198 (215)
T PRK13813 123 FIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNA--- 198 (215)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCC---
Confidence 0 01112223333333222334 88999875 36778888999999999996642
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 021739 259 DGEAGVRKVLQMLRDEFE 276 (308)
Q Consensus 259 ~G~~~v~~~i~~l~~~l~ 276 (308)
.. ..+.++.++++++
T Consensus 199 ~d---~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 AD---PREAAKAINEEIR 213 (215)
T ss_pred CC---HHHHHHHHHHHHh
Confidence 12 2345566665554
No 269
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.96 E-value=0.0099 Score=51.18 Aligned_cols=81 Identities=28% Similarity=0.313 Sum_probs=61.3
Q ss_pred CHHHHHHHHHhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 153 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 153 ~~~~i~~ir~~~~-~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
..+.++.+++.++ +.+....+.+.+.++.+.++|+|++...+. .. .+.+.++.. .++++. |+.|
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~----------~~-~~~~~~~~~--~~~~i~--gv~t 106 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGL----------DP-EVVKAANRA--GIPLLP--GVAT 106 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCC----------CH-HHHHHHHHc--CCcEEC--CcCC
Confidence 3567899988874 777777788899999999999999963211 11 233333333 567776 8889
Q ss_pred HHHHHHHHHcCCCEEEE
Q 021739 232 GTDVFKALALGASGVFV 248 (308)
Q Consensus 232 ~~d~~k~l~~GAd~V~i 248 (308)
.+++.+++..|||.+.+
T Consensus 107 ~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 107 PTEIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999997
No 270
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.95 E-value=0.0066 Score=60.48 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCcEEEEecc--cccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH-cCCCEEEEchHH
Q 021739 176 AEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA-LGASGVFVGRPV 252 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~-~GAd~V~ig~~~ 252 (308)
.+-++.+.+.|+..|.+..- -|+. .-.+.+.+..+.+.+ ++|||++||+.+.+|+.+++. .|||++..++-|
T Consensus 441 ~~~~~~~~~~Gageil~t~id~DGt~---~G~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~f 515 (538)
T PLN02617 441 YELAKAVEELGAGEILLNCIDCDGQG---KGFDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIF 515 (538)
T ss_pred HHHHHHHHhcCCCEEEEeeccccccc---cCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeee
Confidence 35689999999999987542 1221 123567777777766 899999999999999999998 679999999988
Q ss_pred HHh
Q 021739 253 PFS 255 (308)
Q Consensus 253 l~~ 255 (308)
.+.
T Consensus 516 h~~ 518 (538)
T PLN02617 516 HRK 518 (538)
T ss_pred ccC
Confidence 774
No 271
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=96.94 E-value=0.012 Score=53.88 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc---cCCCeEEEecCC
Q 021739 154 WKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGV 229 (308)
Q Consensus 154 ~~~i~~ir~~~~-~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI 229 (308)
.+.++++|+..+ .+|. =.+-+.++++.+.++|+|.|.+.|- +.+.+.++.+.+ ..++.+-++|||
T Consensus 177 ~~av~~~r~~~~~~kIe-VEv~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~~~~~leaSGGI 245 (284)
T PRK06096 177 SGAINQLRRHAPEKKIV-VEADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLAPHCTLSLAGGI 245 (284)
T ss_pred HHHHHHHHHhCCCCCEE-EECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 356788887653 4433 3557999999999999999998663 234454554443 257899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchH
Q 021739 230 RRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
. .+.+.++..+|+|.+.+|.+
T Consensus 246 ~-~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 246 N-LNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred C-HHHHHHHHhcCCCEEEECcc
Confidence 7 89999999999999998876
No 272
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.93 E-value=0.023 Score=50.08 Aligned_cols=116 Identities=17% Similarity=0.136 Sum_probs=67.0
Q ss_pred HHHHHHHHHh-cCCCEEEEe--c-CCHHHHHHHHHcCCcEEEEecccccC-----------------------C------
Q 021739 154 WKDVKWLQTI-TSLPILVKG--V-LTAEDASLAIQYGAAGIIVSNHGARQ-----------------------L------ 200 (308)
Q Consensus 154 ~~~i~~ir~~-~~~Pv~vK~--~-~~~e~a~~~~~~G~d~i~v~~~gg~~-----------------------~------ 200 (308)
.+.++++++. .+.||++=. . .....+..+.++|+|++++++.++.. .
T Consensus 44 ~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~ 123 (216)
T PRK13306 44 MKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQ 123 (216)
T ss_pred HHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHH
Confidence 3678888887 477776543 2 11223445889999999998643210 0
Q ss_pred --------------------CCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCC
Q 021739 201 --------------------DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG 260 (308)
Q Consensus 201 --------------------~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G 260 (308)
++..-....+..+++....+..+..+|||+- +.+.+....|||.+.+|||+..+ ..
T Consensus 124 ~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~-~~~~~~~~~~ad~~VvGr~I~~a---~d 199 (216)
T PRK13306 124 QWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVV-EDLKLFKGIPVKTFIAGRAIRGA---AD 199 (216)
T ss_pred HHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCH-hhHHHHhcCCCCEEEECCcccCC---CC
Confidence 0001112233344443333455999999993 33333344699999999996543 22
Q ss_pred HHHHHHHHHHHHHHHH
Q 021739 261 EAGVRKVLQMLRDEFE 276 (308)
Q Consensus 261 ~~~v~~~i~~l~~~l~ 276 (308)
+ .+.++.++++++
T Consensus 200 p---~~a~~~i~~~i~ 212 (216)
T PRK13306 200 P---AAAARAFKDEIA 212 (216)
T ss_pred H---HHHHHHHHHHHH
Confidence 3 345556666654
No 273
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.92 E-value=0.024 Score=51.39 Aligned_cols=83 Identities=24% Similarity=0.340 Sum_probs=57.1
Q ss_pred HHHHhcCCCEEEEec------CCH-----HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEec
Q 021739 159 WLQTITSLPILVKGV------LTA-----EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 227 (308)
Q Consensus 159 ~ir~~~~~Pv~vK~~------~~~-----e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (308)
+-.+.+++|+++ .. .+. .-++.+.+.|||.|.+.- +. +.+.++.+.. .+||+..|
T Consensus 134 ~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVviaG 199 (264)
T PRK08227 134 DAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIVIAG 199 (264)
T ss_pred HHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEEEeC
Confidence 334457999987 32 111 126888999999998621 11 4566776654 78999999
Q ss_pred CCCC-HHHH----HHHHHcCCCEEEEchHHHHh
Q 021739 228 GVRR-GTDV----FKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 228 GI~~-~~d~----~k~l~~GAd~V~ig~~~l~~ 255 (308)
|=.. .+|+ ..++..||.+|.+||-+...
T Consensus 200 G~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 200 GKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 9874 3334 35677899999999977653
No 274
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=96.90 E-value=0.014 Score=53.31 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=65.3
Q ss_pred HHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc---cCCCeEEEecCC
Q 021739 154 WKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGV 229 (308)
Q Consensus 154 ~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI 229 (308)
.+.++.+|+.. ..+|.| .+.+.++++.+.++|+|.|.+.|- +.+.+.++.+.+ ..++.+.++|||
T Consensus 176 ~~av~~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI 244 (277)
T TIGR01334 176 GGAIGRLKQTAPERKITV-EADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGI 244 (277)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCC
Confidence 35688888764 344443 457899999999999999998753 233444443333 357889999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHH
Q 021739 230 RRGTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig~~~ 252 (308)
. .+++.++..+|+|.+.+|.+.
T Consensus 245 ~-~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 245 N-PENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred C-HHHHHHHHhcCCCEEEeCcce
Confidence 7 899999999999999999863
No 275
>PRK08999 hypothetical protein; Provisional
Probab=96.89 E-value=0.0052 Score=56.98 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHcCCcEEEEecccccCCC--CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 021739 174 LTAEDASLAIQYGAAGIIVSNHGARQLD--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 174 ~~~e~a~~~~~~G~d~i~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
-+.+++..+.+.|+|++.++--..+... ..+..++.+.++.+.. ++||++-||| +.+++..++++||++|.+-+.
T Consensus 234 h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~ 310 (312)
T PRK08999 234 HDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIRG 310 (312)
T ss_pred CCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEE
Confidence 5678888999999999988653322211 1123456677776655 7999999999 899999999999999987665
Q ss_pred H
Q 021739 252 V 252 (308)
Q Consensus 252 ~ 252 (308)
+
T Consensus 311 ~ 311 (312)
T PRK08999 311 L 311 (312)
T ss_pred e
Confidence 3
No 276
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.87 E-value=0.059 Score=47.43 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCEEEEec-----------CCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCe
Q 021739 154 WKDVKWLQTITSLPILVKGV-----------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 222 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-----------~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 222 (308)
.+.++++|+.+++|++.... .+.++++.+.++|+|+|.+........ .+....+.+..+++. ..++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC--CCCe
Confidence 35778888888999873321 235689999999999887754321100 001122334444332 3677
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
++. ++.+.+++.++...|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 775 6789999999999999999774
No 277
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=96.81 E-value=0.013 Score=50.81 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCC-CEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCH
Q 021739 154 WKDVKWLQTITSL-PILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 232 (308)
Q Consensus 154 ~~~i~~ir~~~~~-Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (308)
++.+-.+.+..+. |++ .+.+.+++.++.+.|+.-|-+-|+.-..+.-...+ ...+.+..+.++-+++-.||.|+
T Consensus 175 lk~l~k~~K~L~me~LV--EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlst---TskL~E~i~kDvilva~SGi~tp 249 (289)
T KOG4201|consen 175 LKELYKISKDLGMEPLV--EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLST---TSKLLEGIPKDVILVALSGIFTP 249 (289)
T ss_pred HHHHHHHHHHcCCccee--eeccHHHHHHHHHhCcEEEeecCCccceeeechhh---HHHHHhhCccceEEEeccCCCCH
Confidence 4455555555443 433 35678899999999999888766543322212222 23333444557889999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHHh
Q 021739 233 TDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 233 ~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+|+.+.-..|..+|.+|..+++.
T Consensus 250 dDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 250 DDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred HHHHHHHHcCceEEEecHHHHhc
Confidence 99999999999999999999985
No 278
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.79 E-value=0.01 Score=52.51 Aligned_cols=81 Identities=21% Similarity=0.110 Sum_probs=57.3
Q ss_pred CHHHHHHHHHhc-----CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEec
Q 021739 153 NWKDVKWLQTIT-----SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 227 (308)
Q Consensus 153 ~~~~i~~ir~~~-----~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (308)
..+.|+.+++.+ ++-|.+..+.+.++++.+.++|+++++ +-+. +.+.+.... . .++|++-
T Consensus 53 a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV-sP~~---------~~~v~~~~~-~--~~i~~iP-- 117 (222)
T PRK07114 53 AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV-TPLF---------NPDIAKVCN-R--RKVPYSP-- 117 (222)
T ss_pred HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHHHH-H--cCCCEeC--
Confidence 456677775432 355777778999999999999999996 2211 123333332 2 2677776
Q ss_pred CCCCHHHHHHHHHcCCCEEEE
Q 021739 228 GVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 228 GI~~~~d~~k~l~~GAd~V~i 248 (308)
|+.|+.++..++.+||+.|=+
T Consensus 118 G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 118 GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 999999999999999998754
No 279
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.74 E-value=0.017 Score=50.79 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=61.6
Q ss_pred cCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCC
Q 021739 152 LNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 230 (308)
Q Consensus 152 ~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (308)
...+.|+.+++.+ ++-|.+..+.+.++++.+.++|+++++.-+. +.+.+....+ ..+|++- |+.
T Consensus 52 ~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~---~~i~~iP--G~~ 116 (212)
T PRK05718 52 AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQE---GPIPLIP--GVS 116 (212)
T ss_pred cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH---cCCCEeC--CCC
Confidence 3467789998876 5667777889999999999999999974221 1233333332 2567765 899
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 021739 231 RGTDVFKALALGASGVFV 248 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~i 248 (308)
|+.++..++.+||+.|-+
T Consensus 117 TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 117 TPSELMLGMELGLRTFKF 134 (212)
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999999877
No 280
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.72 E-value=0.28 Score=48.51 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
.+.++.+.++|+|.|.+....+.. ....+.+.++++.. .++||++ |++.|.+++..+..+|||+|-+|
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHS----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcc----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 577899999999998876432221 12445666666544 3688888 99999999999999999999875
No 281
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.68 E-value=0.0098 Score=59.30 Aligned_cols=77 Identities=18% Similarity=0.145 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCcEEEEecccccC--CCCCcchHHHHHHHHHHccCCCeEEEecCCCCH-----------HHHHHHHHcCC
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQ--LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG-----------TDVFKALALGA 243 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-----------~d~~k~l~~GA 243 (308)
+.|+...+.|||-|++-.-.+.. .....+..+.+.++.+.+ .+|+-+.||||+. +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 56889999999999976543321 111234467788887766 7999999999998 55899999999
Q ss_pred CEEEEchHHHHh
Q 021739 244 SGVFVGRPVPFS 255 (308)
Q Consensus 244 d~V~ig~~~l~~ 255 (308)
|-|.+|+..+..
T Consensus 349 dkV~i~s~Av~~ 360 (538)
T PLN02617 349 DKISIGSDAVYA 360 (538)
T ss_pred CEEEEChHHHhC
Confidence 999999987763
No 282
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.67 E-value=0.034 Score=48.65 Aligned_cols=81 Identities=22% Similarity=0.189 Sum_probs=59.0
Q ss_pred CHHHHHHHHHhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCC
Q 021739 153 NWKDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 230 (308)
Q Consensus 153 ~~~~i~~ir~~~~--~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (308)
..+.|+.+++.++ +.|.+..+.+.++++.+.++|+|+++..+. +.+ +.+.... ..++++. |.+
T Consensus 48 ~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~----------~~~-v~~~~~~--~~~~~~~--G~~ 112 (206)
T PRK09140 48 PFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT----------DPE-VIRRAVA--LGMVVMP--GVA 112 (206)
T ss_pred HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC----------CHH-HHHHHHH--CCCcEEc--ccC
Confidence 3567899988775 456666779999999999999999964211 122 2222222 2566665 399
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 021739 231 RGTDVFKALALGASGVFV 248 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~i 248 (308)
|+.++.++..+|||.+.+
T Consensus 113 t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 113 TPTEAFAALRAGAQALKL 130 (206)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999986
No 283
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.66 E-value=0.12 Score=45.37 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCCEEE---Eec--------CCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeE
Q 021739 155 KDVKWLQTITSLPILV---KGV--------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 223 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~v---K~~--------~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (308)
+.++++++.+++|++. |.. .+.++++.+.++|+|+|.+....... ..+....+.+.++++.. ++++
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~-p~~~~~~~~i~~~~~~g--~~~i 126 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR-PDGETLAELIKRIHEEY--NCLL 126 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC-CCCcCHHHHHHHHHHHh--CCeE
Confidence 4667777777889863 221 13458899999999988765322110 00112233444554432 5777
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 224 FLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 224 ia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+. ++.|.+++..+..+|+|.+.+.
T Consensus 127 iv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 127 MA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 76 7899999999999999998653
No 284
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.63 E-value=0.098 Score=45.09 Aligned_cols=87 Identities=23% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHHHHh-cCCCEEEE--ecCC-HHHHHHHHHcCCcEEEEecccccCCCCCcchHH-HHHHHHHHccCCCeEEEe-c
Q 021739 154 WKDVKWLQTI-TSLPILVK--GVLT-AEDASLAIQYGAAGIIVSNHGARQLDYVPATVM-ALEEVVQAAKGRVPVFLD-G 227 (308)
Q Consensus 154 ~~~i~~ir~~-~~~Pv~vK--~~~~-~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipvia~-G 227 (308)
.+.++++++. .++|+.+- .... ...++.+.++|+|++.++.... +.... .+..++ .. .++++.+ =
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~-~~--g~~~~v~~~ 111 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAK-KY--GKEVQVDLI 111 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHH-Hc--CCeEEEEEe
Confidence 4678889886 48888874 3222 2457899999999999865321 11122 223332 22 5677764 7
Q ss_pred CCCCHHHHHHHHHcCCCEEEEc
Q 021739 228 GVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 228 GI~~~~d~~k~l~~GAd~V~ig 249 (308)
+..|+.++.+++..|+|.+.++
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 8899999999888999999885
No 285
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.55 E-value=0.041 Score=57.34 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=55.6
Q ss_pred CCHHHHHHHH----Hc---CCcEEEEecccccCCCCC---cchHHHHHHHHHHccC-CCeEEEecCCCCHHHHHHHHHcC
Q 021739 174 LTAEDASLAI----QY---GAAGIIVSNHGARQLDYV---PATVMALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALALG 242 (308)
Q Consensus 174 ~~~e~a~~~~----~~---G~d~i~v~~~gg~~~~~~---~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~k~l~~G 242 (308)
-+.+++..+. .. |+|++.++.-..+....+ +..++.+.++.+.+.. .+||++-||| +.+++.++++.|
T Consensus 109 h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~G 187 (755)
T PRK09517 109 ETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATG 187 (755)
T ss_pred CCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcC
Confidence 4566655432 22 599998865332221111 2246777777766521 3999999999 699999999999
Q ss_pred CCEEEEchHHHH
Q 021739 243 ASGVFVGRPVPF 254 (308)
Q Consensus 243 Ad~V~ig~~~l~ 254 (308)
|++|.+-+.+..
T Consensus 188 a~giAvisai~~ 199 (755)
T PRK09517 188 IDGLCVVSAIMA 199 (755)
T ss_pred CCEEEEehHhhC
Confidence 999999999874
No 286
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.53 E-value=0.034 Score=52.12 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
.+.+..+.++|+|.|.++.+.|.. ....+.+.++++..+ ++||++ |.+.+.+++.+++.+|||++.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 356888999999999987543321 123456677766542 588888 99999999999999999999874
No 287
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.50 E-value=0.082 Score=48.76 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHcCCcEEEEec---ccccCCCCCcchHHHHHHHHHHccCCCeEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 021739 174 LTAEDASLAIQYGAAGIIVSN---HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG--VRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 174 ~~~e~a~~~~~~G~d~i~v~~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG--I~~~~d~~k~l~~GAd~V~i 248 (308)
.+++++..+.+.|+|++-++. ||-+......-.++.|.++++.+ .++|+++=|| |. .+++.+++..|++-|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~-~~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV-PGFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc-cCCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 468899999999999999882 33222111234678888888776 2489999998 86 68899999999999999
Q ss_pred chHHHH
Q 021739 249 GRPVPF 254 (308)
Q Consensus 249 g~~~l~ 254 (308)
++.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
No 288
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=96.49 E-value=0.045 Score=50.55 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=68.0
Q ss_pred HHHHHHHHhcC-----CCEEEEecCCHHHHHHHHH------cCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeE
Q 021739 155 KDVKWLQTITS-----LPILVKGVLTAEDASLAIQ------YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 223 (308)
Q Consensus 155 ~~i~~ir~~~~-----~Pv~vK~~~~~e~a~~~~~------~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (308)
+.++++|+..+ .+|.| .+-+.+++..+.+ +|+|.|.+.|-.-.. .....+.+.+.+..+.+..+.++
T Consensus 188 ~av~~~r~~~~~~~~~~kIeV-Ev~tleea~ea~~~~~~~~agaDiImLDnm~~~~-~~~~~~~e~l~~av~~~~~~~~l 265 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEV-ETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPL-ENGDVDVSMLKEAVELINGRFET 265 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEE-EECCHHHHHHHHHhcccccCCCCEEEeCCCcccc-cccCCCHHHHHHHHHhhCCCceE
Confidence 44667766221 23332 4578999999999 999999998751100 01122566676666666667899
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 224 FLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 224 ia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
-++|||. .+.+.++..+|+|.+.+|.+..
T Consensus 266 EaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 266 EASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 9999997 8899999899999999998654
No 289
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.49 E-value=0.03 Score=49.71 Aligned_cols=75 Identities=27% Similarity=0.320 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
.+.++...+.|+..+++-.-.|- ..+.+.....+.++.+.+ ++||=..||||+.+++...+.+|++.|.+|+..+
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA-~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av 108 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA-KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAV 108 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc-ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEeccee
Confidence 36788888999999987431110 112345667888888877 7999999999999999999999999999999554
No 290
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.46 E-value=0.037 Score=49.19 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=30.0
Q ss_pred HHHHHHHHHh-cCCCEEEEe--c-CCHHH-HHHHHHcCCcEEEEeccc
Q 021739 154 WKDVKWLQTI-TSLPILVKG--V-LTAED-ASLAIQYGAAGIIVSNHG 196 (308)
Q Consensus 154 ~~~i~~ir~~-~~~Pv~vK~--~-~~~e~-a~~~~~~G~d~i~v~~~g 196 (308)
.+.++++++. ..+++=+|. . .+++. ++.+.++|+|+++++..+
T Consensus 43 ~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~a 90 (230)
T PRK00230 43 PQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHASG 90 (230)
T ss_pred HHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcccC
Confidence 4678888876 456666776 3 34544 567889999999987643
No 291
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.45 E-value=0.043 Score=49.67 Aligned_cols=87 Identities=22% Similarity=0.262 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCC-CEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHH--ccCCCeEEEecCCCC
Q 021739 155 KDVKWLQTITSL-PILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQA--AKGRVPVFLDGGVRR 231 (308)
Q Consensus 155 ~~i~~ir~~~~~-Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~--~~~~ipvia~GGI~~ 231 (308)
+.+++.|+..+. +-+==.+-+.+++..+.++|+|.|.+.|- +.+.+.++.+. ..+++-+=+||||.
T Consensus 176 ~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGgIt- 244 (280)
T COG0157 176 EAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGGIT- 244 (280)
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCCCC-
Confidence 458888876532 31222457899999999999999999874 23455555555 44578899999996
Q ss_pred HHHHHHHHHcCCCEEEEchHH
Q 021739 232 GTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 232 ~~d~~k~l~~GAd~V~ig~~~ 252 (308)
.+.+..+...|.|.+.+|.+-
T Consensus 245 ~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 245 LENIREYAETGVDVISVGALT 265 (280)
T ss_pred HHHHHHHhhcCCCEEEeCccc
Confidence 889999889999999999754
No 292
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.44 E-value=0.16 Score=45.12 Aligned_cols=96 Identities=9% Similarity=-0.033 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCEEEEec----CCHHHHHHHHHcCCcEEEEec-ccccC-CCCCcchHHHHHHHHHHcc---CCCeEEE
Q 021739 155 KDVKWLQTITSLPILVKGV----LTAEDASLAIQYGAAGIIVSN-HGARQ-LDYVPATVMALEEVVQAAK---GRVPVFL 225 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~----~~~e~a~~~~~~G~d~i~v~~-~gg~~-~~~~~~~~~~l~~i~~~~~---~~ipvia 225 (308)
+.+++||+. +.++-+... ...+..+.+.+. +|.|.+-. ..|.. -..-+...+-+.++++... .++.|-+
T Consensus 107 ~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 107 LTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 466777764 442223332 345666666664 89888753 22211 0112233444444443321 2577999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 226 DGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 226 ~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
+|||+ .+.+.++.++|||.+.+||+++
T Consensus 185 DGGI~-~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 185 DGSMT-LELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred ECCCC-HHHHHHHHHCCCCEEEEChhhh
Confidence 99998 7788899999999999999854
No 293
>PLN02591 tryptophan synthase
Probab=96.40 E-value=0.082 Score=47.62 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~ 194 (308)
.+.++.+|+.+++||.+.-. .++++++.+.+.|+|++++..
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 45699999989999999854 669999999999999998854
No 294
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.34 E-value=0.018 Score=50.11 Aligned_cols=83 Identities=27% Similarity=0.240 Sum_probs=59.6
Q ss_pred cccCHHHHHHHHHhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 150 RSLNWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 150 ~~~~~~~i~~ir~~~~-~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
.+...+.|+.+++.++ .-|....++++++++.+.++|+++++ +-+- +.+.+... . ..++|++- |
T Consensus 48 sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiV-sP~~---------~~ev~~~a-~--~~~ip~~P--G 112 (211)
T COG0800 48 TPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIV-SPGL---------NPEVAKAA-N--RYGIPYIP--G 112 (211)
T ss_pred CCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHHH-H--hCCCcccC--C
Confidence 3445678999998875 44555567999999999999999995 2210 12222222 1 23678776 9
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 021739 229 VRRGTDVFKALALGASGVF 247 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ 247 (308)
+.|+.++..++++|++.+=
T Consensus 113 ~~TptEi~~Ale~G~~~lK 131 (211)
T COG0800 113 VATPTEIMAALELGASALK 131 (211)
T ss_pred CCCHHHHHHHHHcChhhee
Confidence 9999999999999998764
No 295
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.31 E-value=0.037 Score=52.19 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
.+.+..+.++|+|.|++....|.+ ....+.++++++..+ ++|||+ |.|-|.+-+...+.+|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s----~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHS----EHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTS----HHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCccH----HHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 577899999999999997543321 123456777776653 789996 88999999999999999999888
No 296
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.30 E-value=0.055 Score=47.08 Aligned_cols=121 Identities=18% Similarity=0.288 Sum_probs=71.5
Q ss_pred CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccC
Q 021739 74 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 153 (308)
Q Consensus 74 d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 153 (308)
+.+.+.+-++.+++.|++++++++=.+ |...+
T Consensus 70 E~~~M~~dI~~~~~~GadG~VfG~L~~------------------------------------------------dg~iD 101 (201)
T PF03932_consen 70 EIEIMKEDIRMLRELGADGFVFGALTE------------------------------------------------DGEID 101 (201)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE--BET------------------------------------------------TSSB-
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEeECC------------------------------------------------CCCcC
Confidence 456677777888899999998864111 12233
Q ss_pred HHHHHHHHHhc-CCCEEEEec----CCHH-HHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEec
Q 021739 154 WKDVKWLQTIT-SLPILVKGV----LTAE-DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 227 (308)
Q Consensus 154 ~~~i~~ir~~~-~~Pv~vK~~----~~~e-~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (308)
.+.++++.+.. +.|+..--. .+++ -.+.+.+.|++.|.-|+..... ....+.|.++.+...+++.|++.|
T Consensus 102 ~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~a----~~g~~~L~~lv~~a~~~i~Im~Gg 177 (201)
T PF03932_consen 102 EEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPTA----LEGIENLKELVEQAKGRIEIMPGG 177 (201)
T ss_dssp HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSST----TTCHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCCH----HHHHHHHHHHHHHcCCCcEEEecC
Confidence 45556665544 677776543 3343 3578889999999765533221 223455666655555689999999
Q ss_pred CCCCHHHHHHHHH-cCCCEEE
Q 021739 228 GVRRGTDVFKALA-LGASGVF 247 (308)
Q Consensus 228 GI~~~~d~~k~l~-~GAd~V~ 247 (308)
||+ .+++.+.++ +|+..+=
T Consensus 178 Gv~-~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 178 GVR-AENVPELVEETGVREIH 197 (201)
T ss_dssp S---TTTHHHHHHHHT-SEEE
T ss_pred CCC-HHHHHHHHHhhCCeEEe
Confidence 997 566777666 7887653
No 297
>PRK14057 epimerase; Provisional
Probab=96.25 E-value=0.25 Score=44.51 Aligned_cols=77 Identities=9% Similarity=0.013 Sum_probs=49.0
Q ss_pred CHHHHHHHHHcCCcEEEEec-ccccCC-CCCcchHHHHHHHHHHcc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 175 TAEDASLAIQYGAAGIIVSN-HGARQL-DYVPATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 175 ~~e~a~~~~~~G~d~i~v~~-~gg~~~-~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
..+..+...+. +|.|.+-. ..|... ..-+...+-+.++++... .++.|-++|||. .+.+.++.++|||.+.+|
T Consensus 144 p~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 144 PLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred CHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEC
Confidence 45666666664 88887643 222110 111233444444443321 257899999998 678889999999999999
Q ss_pred hHHH
Q 021739 250 RPVP 253 (308)
Q Consensus 250 ~~~l 253 (308)
|+++
T Consensus 222 SalF 225 (254)
T PRK14057 222 SALF 225 (254)
T ss_pred hHhh
Confidence 9865
No 298
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.24 E-value=0.028 Score=50.09 Aligned_cols=106 Identities=25% Similarity=0.368 Sum_probs=69.5
Q ss_pred CceEEeeecCCch----HHHHHHHHHHHc---CCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCC
Q 021739 64 IRFFQLYVTKHRN----VDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTD 136 (308)
Q Consensus 64 ~~~~Ql~~~~d~~----~~~~~~~~~~~~---g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~ 136 (308)
..|+.|..-.|++ ...+.+++++.. |+..+-+..|.|..+++..++.-.+.+|.. ..+
T Consensus 91 ~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg---------------~pI 155 (248)
T cd04728 91 TDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLG---------------SPI 155 (248)
T ss_pred CCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC---------------cCC
Confidence 5688887655432 334455555555 999886777778777776665322222210 001
Q ss_pred CchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021739 137 DSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 137 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~~G~d~i~v~ 193 (308)
|++ ..-...+.|+.+++..++||++-. +.+++++..+.+.|+|++.+.
T Consensus 156 Gsg---------~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 156 GSG---------QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred CCC---------CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 111 111136889999988899999886 478999999999999999874
No 299
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.23 E-value=0.023 Score=54.53 Aligned_cols=67 Identities=9% Similarity=0.190 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+.+..+.++|+|.|.+....+. .....+.+.++++.. ++++|| .|+|.|.+++..++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~-p~~~vi-~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKY-PNLDLI-AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhC-CCCcEE-EEecCCHHHHHHHHHcCCCEEEEC
Confidence 6789999999999998654332 123445677776654 245544 489999999999999999999876
No 300
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.22 E-value=0.92 Score=41.25 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=109.9
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHhc-------cCCC--CceEEeeecCCchH
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVSS-------TGPG--IRFFQLYVTKHRNV 77 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~--s---~~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~~ 77 (308)
.|..+.|+.-.+-.+.++-..+.+-+.+.|+...+ + |..+.+.+|..+ ...+ +.+++.. ..+.+.
T Consensus 2 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 80 (281)
T cd00408 2 IPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTRE 80 (281)
T ss_pred CCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHH
Confidence 36678888655546676777888888888976544 2 224556655332 2222 5566665 445666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHH
Q 021739 78 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 157 (308)
Q Consensus 78 ~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 157 (308)
..++.+.+++.|++++.+.- |... + . +.+-..+..
T Consensus 81 ~i~~a~~a~~~Gad~v~v~p--P~y~--------------~-------------------~----------~~~~~~~~~ 115 (281)
T cd00408 81 AIELARHAEEAGADGVLVVP--PYYN--------------K-------------------P----------SQEGIVAHF 115 (281)
T ss_pred HHHHHHHHHHcCCCEEEECC--CcCC--------------C-------------------C----------CHHHHHHHH
Confidence 77888899999999988742 3210 0 0 011123567
Q ss_pred HHHHHhcCCCEEEEec-------CCHHHHHHHHHc-CCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCC
Q 021739 158 KWLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 229 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~-------~~~e~a~~~~~~-G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (308)
+.+.+.+++|+++=.. .+++...++.+. .+.+|.-+. .+...+.++.+..++++.++. |.
T Consensus 116 ~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G~- 183 (281)
T cd00408 116 KAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSS----------GDLDRLTRLIALLGPDFAVLS-GD- 183 (281)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-cc-
Confidence 7787778999987543 567888888762 223332211 234444455544434444443 32
Q ss_pred CCHHHHHHHHHcCCCEEEEchHH
Q 021739 230 RRGTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig~~~ 252 (308)
...+...+.+|+++.+.|..-
T Consensus 184 --d~~~~~~l~~G~~G~i~~~~n 204 (281)
T cd00408 184 --DDLLLPALALGADGAISGAAN 204 (281)
T ss_pred --hHHHHHHHHcCCCEEEehHHh
Confidence 567778889999999888643
No 301
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.20 E-value=0.05 Score=48.41 Aligned_cols=42 Identities=19% Similarity=0.099 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHhc-CCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021739 152 LNWKDVKWLQTIT-SLPILVKG-VLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 152 ~~~~~i~~ir~~~-~~Pv~vK~-~~~~e~a~~~~~~G~d~i~v~ 193 (308)
..|+.|+++++.+ ++||+.=+ +.+.+++....++|+|+|.+.
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 4689999999988 49987654 478999999999999999874
No 302
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=96.17 E-value=0.65 Score=41.22 Aligned_cols=48 Identities=27% Similarity=0.453 Sum_probs=38.4
Q ss_pred CcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 203 VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 203 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.+++.+.|..+++.. ++|+++..|+. .+.+.+.|.. ||++.+|+.+=.
T Consensus 190 ~~~d~~el~~a~~~~--~~pvlvGSGv~-~eN~~~~l~~-adG~IvgT~lK~ 237 (263)
T COG0434 190 SPPDLEELKLAKEAV--DTPVLVGSGVN-PENIEELLKI-ADGVIVGTSLKK 237 (263)
T ss_pred CCCCHHHHHHHHhcc--CCCEEEecCCC-HHHHHHHHHH-cCceEEEEEEcc
Confidence 366778888777766 59999999986 7888888877 999999997644
No 303
>PRK08185 hypothetical protein; Provisional
Probab=96.15 E-value=1.1 Score=41.25 Aligned_cols=109 Identities=15% Similarity=0.238 Sum_probs=72.6
Q ss_pred CHHHHHHHHHc-CCcEEEEecccccCCC-C---CcchHHHHHHHHHHccCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 021739 175 TAEDASLAIQY-GAAGIIVSNHGARQLD-Y---VPATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGVFV 248 (308)
Q Consensus 175 ~~e~a~~~~~~-G~d~i~v~~~gg~~~~-~---~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~d~~k~l~~GAd~V~i 248 (308)
+++++....+. |+|++.++.+.-...+ . ..-.++.|.++++.+ ++|+++=||+..+ +|+.+++.+|..=|-+
T Consensus 150 ~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 150 DPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKINI 227 (283)
T ss_pred CHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEEe
Confidence 67888888876 9999998642211111 1 112578888888776 7999999998655 5666788999999999
Q ss_pred chHHHHhcc-------cCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 249 GRPVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 249 g~~~l~~~~-------~~G------~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
++-+..+.. .+. ..-.....+.+.+.++..|+..|..
T Consensus 228 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 228 SSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred ChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 997654320 011 1123334455667777778877754
No 304
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.14 E-value=0.13 Score=46.05 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=75.3
Q ss_pred CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccC
Q 021739 74 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 153 (308)
Q Consensus 74 d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 153 (308)
+.+.+.+-++.+++.|++++++++=.| |...+
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L~~------------------------------------------------dg~vD 102 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVLDV------------------------------------------------DGHVD 102 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------CCCcC
Confidence 346666777788899999998875222 11223
Q ss_pred HHHHHHHHHhc-CCCEEEEec----CCHH-HHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEec
Q 021739 154 WKDVKWLQTIT-SLPILVKGV----LTAE-DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 227 (308)
Q Consensus 154 ~~~i~~ir~~~-~~Pv~vK~~----~~~e-~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (308)
.+.++++.+.. ++|+..--. .++. ..+.+.+.|++.|.-||...+ .......|.++.+.....+ |++.|
T Consensus 103 ~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~----a~~g~~~L~~lv~~a~~~~-Im~Gg 177 (248)
T PRK11572 103 MPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQD----AEQGLSLIMELIAASDGPI-IMAGA 177 (248)
T ss_pred HHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCC----HHHHHHHHHHHHHhcCCCE-EEeCC
Confidence 45556665544 577766533 2333 367899999999965443211 1112344555554443334 88888
Q ss_pred CCCCHHHHHHHHHcCCCEEEEc
Q 021739 228 GVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 228 GI~~~~d~~k~l~~GAd~V~ig 249 (308)
||+ .+++.+....|+..+=..
T Consensus 178 GV~-~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 178 GVR-LSNLHKFLDAGVREVHSS 198 (248)
T ss_pred CCC-HHHHHHHHHcCCCEEeeC
Confidence 887 788887778998877543
No 305
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.12 E-value=1.1 Score=41.15 Aligned_cols=110 Identities=14% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCHHHHHHHH-HcCCcEEEEecccccCCCCCc-chHHHHHHHHHHccCCCeEEEecCCCCH-HHHHHHHHcCCCEEEEch
Q 021739 174 LTAEDASLAI-QYGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGVFVGR 250 (308)
Q Consensus 174 ~~~e~a~~~~-~~G~d~i~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~-~d~~k~l~~GAd~V~ig~ 250 (308)
.+++++.+.. +.|+|.+-++.+.-+..+.+| -.++.|.++.+.+ ++|++.-||=..+ +++.+++.+|+.-|-+++
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 230 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVNIAS 230 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECH
Confidence 3577776554 689999998753222222222 2468888888776 7999999976665 777889999999999999
Q ss_pred HHHHhcc-------cC---CH---HHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 251 PVPFSLA-------VD---GE---AGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 251 ~~l~~~~-------~~---G~---~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
-+..+.. .. .. .-.....+.+++..+..|+.+|..
T Consensus 231 el~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 231 DLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred HHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7654320 00 11 123334456677777788887754
No 306
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.11 E-value=0.46 Score=43.66 Aligned_cols=150 Identities=13% Similarity=0.048 Sum_probs=85.3
Q ss_pred CceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCC-C-chhh
Q 021739 64 IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTD-D-SGLA 141 (308)
Q Consensus 64 ~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~-~-~~~~ 141 (308)
|+++=.--+.++..+.+.+++..++|+.+|.|. |.- .|++ ++. + .+-+
T Consensus 80 Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iE-Dq~--------------~pk~---------------cg~~~~~~~~ 129 (285)
T TIGR02320 80 PIILDGDTGGNFEHFRRLVRKLERRGVSAVCIE-DKL--------------GLKK---------------NSLFGNDVAQ 129 (285)
T ss_pred CEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEe-ccC--------------CCcc---------------ccccCCCCcc
Confidence 556655545678888899999999999888763 210 0110 000 0 0000
Q ss_pred hHhhhhcccccCHHHHHHHHHh---cCCCEEEEe-----cCCH----HHHHHHHHcCCcEEEEecccccCCCCCcchHHH
Q 021739 142 SYVANQIDRSLNWKDVKWLQTI---TSLPILVKG-----VLTA----EDASLAIQYGAAGIIVSNHGARQLDYVPATVMA 209 (308)
Q Consensus 142 ~~~~~~~d~~~~~~~i~~ir~~---~~~Pv~vK~-----~~~~----e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~ 209 (308)
..+ +.+...+.|+.+++. .+++|+... .... +-++...++|||.|-+.. ...+.+.
T Consensus 130 ~l~----s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--------~~~~~~e 197 (285)
T TIGR02320 130 PQA----SVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--------RKKDPDE 197 (285)
T ss_pred ccc----CHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--------CCCCHHH
Confidence 111 111123445555554 256777762 1123 336788999999998752 1234566
Q ss_pred HHHHHHHccC---CCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 210 LEEVVQAAKG---RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 210 l~~i~~~~~~---~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+.++.+.+.. .+|++...+-.....+.+.-++|++.|..|..++++
T Consensus 198 i~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 198 ILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred HHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 6666665532 468776543111123555567899999999877664
No 307
>PLN02417 dihydrodipicolinate synthase
Probab=96.09 E-value=0.056 Score=49.52 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=59.7
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCc-chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEchHHH
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA----LALGASGVFVGRPVP 253 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~----l~~GAd~V~ig~~~l 253 (308)
++.+.+.|+++|.+.++.|....-.. ...+.+..+.+.+.+++||++.=|-.+..|+.+. -.+|||+|++-.|.+
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 45677889999998877653211111 1123344455555668999986666666776653 458999999999987
Q ss_pred HhcccCCHHHHHHHHHHHHH
Q 021739 254 FSLAVDGEAGVRKVLQMLRD 273 (308)
Q Consensus 254 ~~~~~~G~~~v~~~i~~l~~ 273 (308)
+. ..++++.+++..+.+
T Consensus 108 ~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 108 GK---TSQEGLIKHFETVLD 124 (280)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 64 245666666665544
No 308
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.94 Score=39.62 Aligned_cols=93 Identities=20% Similarity=0.245 Sum_probs=64.1
Q ss_pred CHHHHHHHHHhcCCCEEEEecCCH---HHHHHHHHcCCcEEEEecc-----cccCCCCCcchHHHHHHHHHHccCCCeEE
Q 021739 153 NWKDVKWLQTITSLPILVKGVLTA---EDASLAIQYGAAGIIVSNH-----GARQLDYVPATVMALEEVVQAAKGRVPVF 224 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~~~~---e~a~~~~~~G~d~i~v~~~-----gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 224 (308)
..+.++++++..++||+--..... .........-+|.+.+... ||+ +..-+|..+... ....|++
T Consensus 86 ~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt---G~~fDW~~l~~~----~~~~~~~ 158 (208)
T COG0135 86 DPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT---GQTFDWNLLPKL----RLSKPVM 158 (208)
T ss_pred CHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC---CcEECHHHhccc----cccCCEE
Confidence 457889999887888874343332 2344555567899988764 332 223356666543 1257899
Q ss_pred EecCCCCHHHHHHHHHcCC-CEEEEchHHH
Q 021739 225 LDGGVRRGTDVFKALALGA-SGVFVGRPVP 253 (308)
Q Consensus 225 a~GGI~~~~d~~k~l~~GA-d~V~ig~~~l 253 (308)
..||+. ++++.++++.+. .+|=+.|.+=
T Consensus 159 LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE 187 (208)
T COG0135 159 LAGGLN-PDNVAEAIALGPPYGVDVSSGVE 187 (208)
T ss_pred EECCCC-HHHHHHHHHhcCCceEEeccccc
Confidence 999996 999999999886 8888888653
No 309
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.00 E-value=0.27 Score=46.00 Aligned_cols=150 Identities=18% Similarity=0.108 Sum_probs=84.3
Q ss_pred CCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCC---------CCH----HH----HhccCCCCceEEeeecC
Q 021739 11 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT---------SSV----EE----VSSTGPGIRFFQLYVTK 73 (308)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~---------~~~----e~----i~~~~~~~~~~Ql~~~~ 73 (308)
..|++++ +.+. .++.-..+++.+.++|+.+.-=.++. ..+ .+ +.+...-|.++.+-+
T Consensus 99 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIAS-LNGV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEE-eCCC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 4677766 4342 34444578888888886543111111 011 12 222222377887753
Q ss_pred CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccC
Q 021739 74 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 153 (308)
Q Consensus 74 d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 153 (308)
+...+.++++.++++|+++|.++=..+... -++.+ ... ... .+ ++........
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~---id~~~------------~~~------~~~--~g----lSG~~~~~~a 225 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQPD---IDLET------------LEV------VPN--LL----LSSPAEIRLP 225 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCCC---ccccc------------cce------ecC--CC----cCCccchhHH
Confidence 344567788888899999988753222110 00000 000 000 00 1111112335
Q ss_pred HHHHHHHHHhcCCCEE-EEecCCHHHHHHHHHcCCcEEEEe
Q 021739 154 WKDVKWLQTITSLPIL-VKGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~-vK~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
++.++++++..++||+ +.++.+.+++.+...+|||.|.+.
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ 266 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTT 266 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEe
Confidence 6788888888899987 445689999999989999999885
No 310
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.00 E-value=1.2 Score=40.77 Aligned_cols=182 Identities=18% Similarity=0.166 Sum_probs=106.9
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHcCCceee-----cCCCCCCHHHHhc-------cCCC--CceEEeeecCCchH
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL-----SSWATSSVEEVSS-------TGPG--IRFFQLYVTKHRNV 77 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~-----s~~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~~ 77 (308)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ |++...+.+|..+ ..++ +.+.++. ..+.+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG-SNSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC-CchHHH
Confidence 47788898655545666667788888888986544 2334556655332 2222 5666665 456777
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHH
Q 021739 78 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 157 (308)
Q Consensus 78 ~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 157 (308)
..++++.+++.|++++.+.. |... + . ..+-..+..
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p--P~~~------------~---------------------~----------~~~~i~~~~ 119 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT--PYYN------------K---------------------P----------TQEGLYQHF 119 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC--CcCC------------C---------------------C----------CHHHHHHHH
Confidence 88888999999999987752 3210 0 0 011123556
Q ss_pred HHHHHhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCC
Q 021739 158 KWLQTITSLPILVKGV-------LTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 229 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~-------~~~e~a~~~~~~G-~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (308)
+++.+.+++||++=.. ++++...++.+.+ +-++.-+ ..+...+.++.+...+++.++. |
T Consensus 120 ~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s----------~~d~~~~~~~~~~~~~~~~v~~-G-- 186 (292)
T PRK03170 120 KAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEA----------TGDLERVSELIELVPDDFAVYS-G-- 186 (292)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEEC----------CCCHHHHHHHHHhCCCCeEEEE-C--
Confidence 7777777889886532 5677777775432 2222211 1123334444433333444443 3
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHH
Q 021739 230 RRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
....+...+.+|+++++-|...+
T Consensus 187 -~d~~~~~~l~~G~~G~is~~~n~ 209 (292)
T PRK03170 187 -DDALALPFLALGGVGVISVAANV 209 (292)
T ss_pred -ChHhHHHHHHcCCCEEEEhHHhh
Confidence 23345677889999998776543
No 311
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.98 E-value=0.068 Score=49.33 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=60.4
Q ss_pred HHHHHHHcCCcEEEEecccccCCCCC-cchHHHHHHHHHHccCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 021739 178 DASLAIQYGAAGIIVSNHGARQLDYV-PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPV 252 (308)
Q Consensus 178 ~a~~~~~~G~d~i~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k----~l~~GAd~V~ig~~~ 252 (308)
.++.+.+.|+++|.+.++.|....-. ....+.+..+.+.+.+++||++.=|-.+..|.++ +.++|||++++..|+
T Consensus 26 lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~ 105 (294)
T TIGR02313 26 LIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPY 105 (294)
T ss_pred HHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 34667788999999877655321111 1122334445555667899997666666666653 445799999999999
Q ss_pred HHhcccCCHHHHHHHHHHHHHH
Q 021739 253 PFSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 253 l~~~~~~G~~~v~~~i~~l~~~ 274 (308)
++.. .++++.+++..+.+.
T Consensus 106 y~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 106 YNKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCCC---CHHHHHHHHHHHHHh
Confidence 8752 455555565555544
No 312
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=95.96 E-value=0.031 Score=49.94 Aligned_cols=105 Identities=22% Similarity=0.332 Sum_probs=70.8
Q ss_pred CceEEeee-------cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCC
Q 021739 64 IRFFQLYV-------TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTD 136 (308)
Q Consensus 64 ~~~~Ql~~-------~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~ 136 (308)
..|+.|.. ..|+-.+.+..+.+.+.||..+--..+-|+..+|-.|+--.-.+|.
T Consensus 105 ~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPl------------------- 165 (267)
T CHL00162 105 NNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPL------------------- 165 (267)
T ss_pred CCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeec-------------------
Confidence 45777764 3466677788888888899887766667777666655422222221
Q ss_pred CchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEE-ecCCHHHHHHHHHcCCcEEEE
Q 021739 137 DSGLASYVANQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIV 192 (308)
Q Consensus 137 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK-~~~~~e~a~~~~~~G~d~i~v 192 (308)
++..++ +..-.....|+.|++..++||++- ++.+++++..+.+.|+|++-+
T Consensus 166 gsPIGS-----g~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 166 GSPIGS-----GQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred cCcccC-----CCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 011110 011123567899999999999987 457899999999999999976
No 313
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.94 E-value=0.034 Score=54.45 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
.+.+..+.++|+|.|.+....|.. ...++.+.++++.. .++||++ |++-|.+++..++.+|||++.+|
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHS----IYVIDSIKEIKKTY-PDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcH----hHHHHHHHHHHHhC-CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 467889999999999997643321 23456677777654 3689998 99999999999999999999766
No 314
>PRK00208 thiG thiazole synthase; Reviewed
Probab=95.92 E-value=0.048 Score=48.62 Aligned_cols=106 Identities=24% Similarity=0.317 Sum_probs=69.6
Q ss_pred CceEEeeecCCc----hHHHHHHHHHHHc---CCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCC
Q 021739 64 IRFFQLYVTKHR----NVDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTD 136 (308)
Q Consensus 64 ~~~~Ql~~~~d~----~~~~~~~~~~~~~---g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~ 136 (308)
..|+.|..-.|+ ....+.+++++.. |+..+-+..|.|+.+++..++.-.+.+|.. .-+
T Consensus 91 ~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg---------------~pI 155 (250)
T PRK00208 91 TNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLG---------------API 155 (250)
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC---------------cCC
Confidence 568888764443 2344555556555 999886677778877777666323322210 001
Q ss_pred CchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEe
Q 021739 137 DSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 137 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~ 193 (308)
|++ ..-...+.++.+++..++||++-.. .+++++..+.+.|+|++.+.
T Consensus 156 Gsg---------~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 156 GSG---------LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred CCC---------CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 111 1111357799998888999998854 68999999999999999874
No 315
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=95.91 E-value=0.41 Score=43.21 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=60.9
Q ss_pred HHHHHHHHHhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEE
Q 021739 154 WKDVKWLQTIT--SLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 225 (308)
Q Consensus 154 ~~~i~~ir~~~--~~Pv~vK~~--~~~e~----a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (308)
.+.++.+|+.. +.++.+... .+.++ ++.+.+.|+++|.--. ....++.+.++++.. .+||++
T Consensus 116 ~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~--------~~~d~~~~~~l~~~~--~ipia~ 185 (265)
T cd03315 116 VAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPL--------PADDLEGRAALARAT--DTPIMA 185 (265)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCC--------CcccHHHHHHHHhhC--CCCEEE
Confidence 46788888876 456666543 34544 4667778888885210 112356667776655 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 021739 226 DGGVRRGTDVFKALALG-ASGVFVG 249 (308)
Q Consensus 226 ~GGI~~~~d~~k~l~~G-Ad~V~ig 249 (308)
++.+.+..|+.+++..+ +|.|++-
T Consensus 186 dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 186 DESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 99999999999999876 8888874
No 316
>PRK06852 aldolase; Validated
Probab=95.91 E-value=0.19 Score=46.45 Aligned_cols=89 Identities=24% Similarity=0.238 Sum_probs=57.5
Q ss_pred HhcCCCEEEEec---------CCHH----HHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 162 TITSLPILVKGV---------LTAE----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 162 ~~~~~Pv~vK~~---------~~~e----~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
+.+++|+++-.. ..++ -++.+.+.|||.|.+--.+ .. +....+.+.++.+.. +.+||+..||
T Consensus 164 ~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~-~~---~~g~~e~f~~vv~~~-g~vpVviaGG 238 (304)
T PRK06852 164 HKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK-KE---GANPAELFKEAVLAA-GRTKVVCAGG 238 (304)
T ss_pred HHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC-cC---CCCCHHHHHHHHHhC-CCCcEEEeCC
Confidence 457999886322 1122 2688899999999974321 00 111345566666543 3689999998
Q ss_pred CCC-HHHHH----HHHH-cCCCEEEEchHHHHh
Q 021739 229 VRR-GTDVF----KALA-LGASGVFVGRPVPFS 255 (308)
Q Consensus 229 I~~-~~d~~----k~l~-~GAd~V~ig~~~l~~ 255 (308)
=+. .+|++ .++. .||.++.+||-++..
T Consensus 239 ~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~ 271 (304)
T PRK06852 239 SSTDPEEFLKQLYEQIHISGASGNATGRNIHQK 271 (304)
T ss_pred CCCCHHHHHHHHHHHHHHcCCceeeechhhhcC
Confidence 774 33444 4666 899999999987654
No 317
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.89 E-value=0.086 Score=48.48 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=59.4
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCcc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEchHHH
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA----LALGASGVFVGRPVP 253 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~----l~~GAd~V~ig~~~l 253 (308)
++.+.+.|+|+|.+.++.|....-... ..+.+..+.+...+++|||+.-|- +..+..+. -++|||++++-.|++
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456778999999987765532211111 223345555666668999997775 66666643 347999999999987
Q ss_pred HhcccCCHHHHHHHHHHHHHH
Q 021739 254 FSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 254 ~~~~~~G~~~v~~~i~~l~~~ 274 (308)
+. ..++++.++++.+.+.
T Consensus 106 ~~---~~~~~i~~~f~~v~~~ 123 (289)
T cd00951 106 TE---APQEGLYAHVEAVCKS 123 (289)
T ss_pred CC---CCHHHHHHHHHHHHhc
Confidence 64 2456666665555443
No 318
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.87 E-value=0.076 Score=49.20 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=59.2
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCc-chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEchHHH
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL----ALGASGVFVGRPVP 253 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l----~~GAd~V~ig~~~l 253 (308)
++.+.+.|+|+|.+.++.|....-.. ...+.+..+.+.+.+++|||+.-|- +..+.++.. .+|||+|++-.|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 46677889999998776553211111 1223445555666678999987664 666666433 47999999999987
Q ss_pred HhcccCCHHHHHHHHHHHHHH
Q 021739 254 FSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 254 ~~~~~~G~~~v~~~i~~l~~~ 274 (308)
+. ..++++.+++..+.+.
T Consensus 113 ~~---~~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TE---APQEGLAAHVEAVCKS 130 (303)
T ss_pred CC---CCHHHHHHHHHHHHHh
Confidence 64 2456666666665554
No 319
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=95.86 E-value=0.13 Score=46.74 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~ 194 (308)
.+.++++|+.++.||.+... .++++++.+.++|+|++++..
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 46789999989999999854 569999999999999998854
No 320
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=95.86 E-value=0.078 Score=58.04 Aligned_cols=117 Identities=14% Similarity=0.149 Sum_probs=84.5
Q ss_pred HHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc-----cCCCeEEE-ecCCCCHHHHHHHHHcCCCEEEEchH
Q 021739 178 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA-----KGRVPVFL-DGGVRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 178 ~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia-~GGI~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
+|..+.+.|+..|++|.++-.......|.+-++..+.+.+ +.++-||+ +|.+++.-|++..+..|||+|.-.-+
T Consensus 602 ~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYLA 681 (1485)
T PRK11750 602 EAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLA 681 (1485)
T ss_pred HHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHHH
Confidence 4678888999999999765321112345555665655443 34677888 89999999999999999999964433
Q ss_pred HH--HhcccCC------HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021739 252 VP--FSLAVDG------EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 294 (308)
Q Consensus 252 ~l--~~~~~~G------~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (308)
+- ..+...| .+.+.+++..+.++|...|..+|.+.++.-++..
T Consensus 682 ~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaq 732 (1485)
T PRK11750 682 YETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQ 732 (1485)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcc
Confidence 31 1111122 3678899999999999999999999988776653
No 321
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.85 E-value=1.3 Score=39.83 Aligned_cols=195 Identities=19% Similarity=0.193 Sum_probs=103.6
Q ss_pred CcccCCc-eEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHHHHHHH
Q 021739 7 GFNISMP-IMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRA 85 (308)
Q Consensus 7 g~~~~~P-i~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~~~~~~ 85 (308)
+.....+ ++.+|-+.- .++--..+|+.+++.|+.+....- .. +.. .+.-|| +...+-+..+.+.+
T Consensus 10 ~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~--~k-----pRt-s~~sf~---G~G~~gl~~L~~~~ 75 (250)
T PRK13397 10 NKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGA--YK-----PRT-SAASFQ---GLGLQGIRYLHEVC 75 (250)
T ss_pred CccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecc--cC-----CCC-CCcccC---CCCHHHHHHHHHHH
Confidence 3444444 444564432 333346789999999998877621 11 011 133344 44556666666777
Q ss_pred HHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcC
Q 021739 86 ERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS 165 (308)
Q Consensus 86 ~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~ 165 (308)
++.|..++- ++-.+. ....+. .+ .+.++.. +..+ ...+.++++.+ ++
T Consensus 76 ~~~Gl~~~T-ev~d~~---~v~~~~-e~---------------vdilqIg------s~~~------~n~~LL~~va~-tg 122 (250)
T PRK13397 76 QEFGLLSVS-EIMSER---QLEEAY-DY---------------LDVIQVG------ARNM------QNFEFLKTLSH-ID 122 (250)
T ss_pred HHcCCCEEE-eeCCHH---HHHHHH-hc---------------CCEEEEC------cccc------cCHHHHHHHHc-cC
Confidence 788887642 321111 111110 01 0111110 0001 12456777764 58
Q ss_pred CCEEEEec--CCHHH----HHHHHHcCCcEEEEecccccCCCC--C-cchHHHHHHHHHHccCCCeEEEecC----CCC-
Q 021739 166 LPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDY--V-PATVMALEEVVQAAKGRVPVFLDGG----VRR- 231 (308)
Q Consensus 166 ~Pv~vK~~--~~~e~----a~~~~~~G~d~i~v~~~gg~~~~~--~-~~~~~~l~~i~~~~~~~ipvia~GG----I~~- 231 (308)
+||++|.. .+.++ ++.+.+.|..-|.+--+|-+.... . ..+...+..+++.. .+|||.+-. .|.
T Consensus 123 kPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~SHs~G~r~~ 200 (250)
T PRK13397 123 KPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVSHSTGRRDL 200 (250)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCCCCCcccch
Confidence 99999965 56655 466677888666654323111111 1 23455666666544 689999744 332
Q ss_pred -HHHHHHHHHcCCCEEEEch
Q 021739 232 -GTDVFKALALGASGVFVGR 250 (308)
Q Consensus 232 -~~d~~k~l~~GAd~V~ig~ 250 (308)
..-...|+++|||++++-+
T Consensus 201 v~~~a~AAvA~GAdGl~IE~ 220 (250)
T PRK13397 201 LLPAAKIAKAVGANGIMMEV 220 (250)
T ss_pred HHHHHHHHHHhCCCEEEEEe
Confidence 1234567789999999876
No 322
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.81 E-value=0.079 Score=49.25 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=59.2
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCc-chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEchHHH
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL----ALGASGVFVGRPVP 253 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l----~~GAd~V~ig~~~l 253 (308)
++.+.+.|+++|.+.++.|....-.. ...+.+..+.+.+.+++|||+.-|=.+..|+.+.. .+|||++++-.|++
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 45677899999998776553211111 12233444555666789999876656667766533 47999999999987
Q ss_pred HhcccCCHHHHHHHHHHHHHH
Q 021739 254 FSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 254 ~~~~~~G~~~v~~~i~~l~~~ 274 (308)
+.. .++++.++++.+.+.
T Consensus 115 ~~~---~~~~l~~yf~~va~a 132 (309)
T cd00952 115 LPL---DVDTAVQFYRDVAEA 132 (309)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 355555555555443
No 323
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.80 E-value=0.14 Score=48.07 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCH----HHHHHHHHcCCcEEEEecc---cccCCCCCc---chHHHHHHHHHHccCCCe
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTA----EDASLAIQYGAAGIIVSNH---GARQLDYVP---ATVMALEEVVQAAKGRVP 222 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~----e~a~~~~~~G~d~i~v~~~---gg~~~~~~~---~~~~~l~~i~~~~~~~ip 222 (308)
.+.++.+++..++||++++. .+. +.++.+.++|+|+|.+... +.....+.. ..++.+..+++.+ ++|
T Consensus 90 ~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iP 167 (334)
T PRK07565 90 LELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIP 167 (334)
T ss_pred HHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCc
Confidence 45666777777899999985 343 3467888899999998421 111111111 1234445555544 689
Q ss_pred EEEe--cCCCCHHHHHHHHH-cCCCEEEEch
Q 021739 223 VFLD--GGVRRGTDVFKALA-LGASGVFVGR 250 (308)
Q Consensus 223 via~--GGI~~~~d~~k~l~-~GAd~V~ig~ 250 (308)
|++- +++.+..++.+++. .|+|+|.+-.
T Consensus 168 V~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 168 VAVKLSPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred EEEEeCCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 9876 44556678888775 8999887743
No 324
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.80 E-value=0.048 Score=47.79 Aligned_cols=72 Identities=24% Similarity=0.218 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
.+.|+...++||++|.+....+. . ....+.+..+++.. ++||+.-|+|++..++..++++|||.|.++.+.+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~---~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-F---QGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-c---CCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 36789999999999987542211 0 11345566666554 7999999999999999999999999999887543
No 325
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.76 E-value=0.098 Score=47.68 Aligned_cols=93 Identities=25% Similarity=0.354 Sum_probs=59.6
Q ss_pred HHHHHHHcCCcEEEEecccccCCCCCc-chHHHHHHHHHHccCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 021739 178 DASLAIQYGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPV 252 (308)
Q Consensus 178 ~a~~~~~~G~d~i~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k----~l~~GAd~V~ig~~~ 252 (308)
.++.+.+.|+++|.+.++.|....-.. ...+.+..+.+...+++||++.-|-.+..+..+ +-.+|||++++..|+
T Consensus 23 ~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~ 102 (281)
T cd00408 23 LVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPY 102 (281)
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 346677889999998776654321111 123344555566666899988777666666554 334799999999998
Q ss_pred HHhcccCCHHHHHHHHHHHHH
Q 021739 253 PFSLAVDGEAGVRKVLQMLRD 273 (308)
Q Consensus 253 l~~~~~~G~~~v~~~i~~l~~ 273 (308)
++. ...+++.+++..+.+
T Consensus 103 y~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 103 YNK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CCC---CCHHHHHHHHHHHHh
Confidence 875 245555555555544
No 326
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=95.65 E-value=0.2 Score=47.26 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=82.1
Q ss_pred CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccC
Q 021739 74 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 153 (308)
Q Consensus 74 d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 153 (308)
+++.+.+.++++.+.|++.+-+.++.... . . ...+..
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~-----------------------------------~--~------~~~~~d 175 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDS-----------------------------------G--G------EDLRED 175 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCc-----------------------------------c--h------HHHHHH
Confidence 46767777777788999998877643210 0 0 012234
Q ss_pred HHHHHHHHHhc--CCCEEEEec--CCHHHH----HHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEE
Q 021739 154 WKDVKWLQTIT--SLPILVKGV--LTAEDA----SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 225 (308)
Q Consensus 154 ~~~i~~ir~~~--~~Pv~vK~~--~~~e~a----~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (308)
.+.++.+|+.+ +.++.+... .+.+++ +.+.+.++++|.= . ..+..+..+.++++.. .+||++
T Consensus 176 ~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq---P-----~~~~~~~~~~~l~~~~--~ipi~~ 245 (357)
T cd03316 176 LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE---P-----VPPDDLEGLARLRQAT--SVPIAA 245 (357)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC---C-----CCccCHHHHHHHHHhC--CCCEEe
Confidence 57789999876 578887654 455655 4445556666531 0 0112456667776664 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 021739 226 DGGVRRGTDVFKALALG-ASGVFVG 249 (308)
Q Consensus 226 ~GGI~~~~d~~k~l~~G-Ad~V~ig 249 (308)
+..+.+..|+.+++..| +|.+.+-
T Consensus 246 dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 246 GENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred ccccccHHHHHHHHHhCCCCEEecC
Confidence 99999999999999876 8888764
No 327
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=95.65 E-value=0.033 Score=49.20 Aligned_cols=159 Identities=19% Similarity=0.278 Sum_probs=86.7
Q ss_pred eecCcccCCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCC-----C-C------------------------C
Q 021739 4 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWA-----T-S------------------------S 53 (308)
Q Consensus 4 ~~~g~~~~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~-----~-~------------------------~ 53 (308)
+|.|++|.+.++++-=-+ .+ ...+.++....|+-++.-... . . +
T Consensus 1 ki~g~~f~SRL~lGTgky---~s---~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaGc~t 74 (247)
T PF05690_consen 1 KIGGKEFRSRLILGTGKY---PS---PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTAGCRT 74 (247)
T ss_dssp -ETTEEES-SEEEE-STS---SS---HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT-SS
T ss_pred CcCCEEeecceEEecCCC---CC---HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCCCCCC
Confidence 478899999999876222 22 335666777777665432221 1 0 1
Q ss_pred HHH------HhccCCCCceEEeeec-------CCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccc
Q 021739 54 VEE------VSSTGPGIRFFQLYVT-------KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLT 120 (308)
Q Consensus 54 ~e~------i~~~~~~~~~~Ql~~~-------~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~ 120 (308)
-|| ++...-+..|+.|..- .|+-.+.+..+.+.+.||..+--.-+-|+..+|-.|+--.-.+|.
T Consensus 75 A~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPl--- 151 (247)
T PF05690_consen 75 AEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPL--- 151 (247)
T ss_dssp HHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEB---
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEec---
Confidence 111 1111123568777643 355566777777778899887766666776666655422222221
Q ss_pred cccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 021739 121 LKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIV 192 (308)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~~G~d~i~v 192 (308)
++..++ +..-.....++.+++..++||++-- +-++.++..+.|.|+|+|.+
T Consensus 152 ----------------gsPIGS-----g~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 152 ----------------GSPIGS-----GRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp ----------------SSSTTT--------SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred ----------------cccccc-----CcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 011111 0011234678999999999999874 46899999999999999976
No 328
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.64 E-value=0.075 Score=46.98 Aligned_cols=73 Identities=21% Similarity=0.105 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH--cCCCEEEEchHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA--LGASGVFVGRPVP 253 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~--~GAd~V~ig~~~l 253 (308)
.+.|+...+.|+|.+++..-.+. .+.+.....+.++.+. +|+...|||+|.+|+.+++. .||+-|.+|+..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 35678888999999988643332 1334567777777654 58999999999999999865 3699999999765
Q ss_pred H
Q 021739 254 F 254 (308)
Q Consensus 254 ~ 254 (308)
.
T Consensus 113 ~ 113 (221)
T TIGR00734 113 D 113 (221)
T ss_pred C
Confidence 3
No 329
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.60 E-value=0.13 Score=47.52 Aligned_cols=92 Identities=21% Similarity=0.329 Sum_probs=58.3
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCcc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEchHHH
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA----LALGASGVFVGRPVP 253 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~----l~~GAd~V~ig~~~l 253 (308)
++.+.+.|+|+|.+.++.|....-... ..+.+..+.+...+++||++.=|- +..++++. -.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 466778999999987766532211111 123344455566678999887663 55565543 347999999999988
Q ss_pred HhcccCCHHHHHHHHHHHHHH
Q 021739 254 FSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 254 ~~~~~~G~~~v~~~i~~l~~~ 274 (308)
+.. .++++.+++..+.+.
T Consensus 111 ~~~---s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 111 ING---EQEGLYAHVEAVCES 128 (296)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 356666666555543
No 330
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.59 E-value=0.11 Score=48.52 Aligned_cols=68 Identities=21% Similarity=0.108 Sum_probs=49.8
Q ss_pred HHHHHHHHHcC--CcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 176 AEDASLAIQYG--AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 176 ~e~a~~~~~~G--~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
.+.+..+.++| +|+|++....|.+ ....+.+.++++..+ . +.+.-|.|-|++++..++.+|||+|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGhs----~~~i~~ik~ir~~~p-~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGYS----EHFVEFVKLVREAFP-E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcH----HHHHHHHHHHHhhCC-C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 45678888885 9999997644432 224566777776552 3 4455578999999999999999998766
No 331
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.21 Score=46.79 Aligned_cols=89 Identities=19% Similarity=0.344 Sum_probs=67.9
Q ss_pred CCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhh
Q 021739 63 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 142 (308)
Q Consensus 63 ~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~ 142 (308)
.|....+....|.+.+.+.++.++.+|++.+-|+ |++. +.+ + .
T Consensus 142 ~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVH------GRtr-~~k------------------------g--~---- 184 (358)
T KOG2335|consen 142 VPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVH------GRTR-EQK------------------------G--L---- 184 (358)
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEe------cccH-Hhc------------------------C--C----
Confidence 4677777778899999999999999999988776 2211 110 0 0
Q ss_pred HhhhhcccccCHHHHHHHHHhcC-CCEEEEec-CCHHHHHHHHH-cCCcEEEEe
Q 021739 143 YVANQIDRSLNWKDVKWLQTITS-LPILVKGV-LTAEDASLAIQ-YGAAGIIVS 193 (308)
Q Consensus 143 ~~~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~~-~~~e~a~~~~~-~G~d~i~v~ 193 (308)
..+...|+.|+.||+... +||++-+. .+.+++.++.+ .|+|+|.+.
T Consensus 185 -----~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 185 -----KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred -----CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 134567999999999886 99998865 67899988887 999999753
No 332
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.54 E-value=0.25 Score=45.19 Aligned_cols=155 Identities=22% Similarity=0.179 Sum_probs=86.7
Q ss_pred CCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCC----------C---HHH----HhccCCCCceEEeeecC
Q 021739 11 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS----------S---VEE----VSSTGPGIRFFQLYVTK 73 (308)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~----------~---~e~----i~~~~~~~~~~Ql~~~~ 73 (308)
..|++++ +.+. .++.-...++.+.+.|+.+.-=.++.. . +.+ +.+...-|.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 3565554 4443 343335678888888876432111100 1 112 22222236777776556
Q ss_pred CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccC
Q 021739 74 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 153 (308)
Q Consensus 74 d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 153 (308)
+.+.+.++++.++++|+++|.++-..+.. ..+... ..|.. .... .+ ++........
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~~---~~~~~~--~~~~~-------------~~~~--~g----~sg~~~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISGR---VVDLKT--VGPGP-------------KRGT--GG----LSGAPIRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcc---ceeccc--Ccccc-------------CCCC--Cc----cCcHHHHHHH
Confidence 66788889999999999999876322110 000000 00000 0000 00 0000011234
Q ss_pred HHHHHHHHHhc--CCCEEEEec-CCHHHHHHHHHcCCcEEEEe
Q 021739 154 WKDVKWLQTIT--SLPILVKGV-LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 154 ~~~i~~ir~~~--~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~ 193 (308)
++.++++++.. ++||+.-+. .+.+++..+..+|+|+|.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 78899999988 899876654 67999999999999999874
No 333
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.49 E-value=0.13 Score=47.61 Aligned_cols=93 Identities=25% Similarity=0.361 Sum_probs=58.1
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCc-chHHHHHHHHHHccCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 253 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k----~l~~GAd~V~ig~~~l 253 (308)
++.+.+.|+|+|.+-++.|....-.. ...+.+..+++.+.+++|||+.-|=.+-+++.+ +-.+|||++++-.|.+
T Consensus 31 v~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 46778899999998777653211111 122334555666667899998666555555543 3348999999999998
Q ss_pred HhcccCCHHHHHHHHHHHHHH
Q 021739 254 FSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 254 ~~~~~~G~~~v~~~i~~l~~~ 274 (308)
+.. .++++.+.+..+.+.
T Consensus 111 ~k~---~~~gl~~hf~~ia~a 128 (299)
T COG0329 111 NKP---SQEGLYAHFKAIAEA 128 (299)
T ss_pred cCC---ChHHHHHHHHHHHHh
Confidence 753 344444444444333
No 334
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.47 E-value=0.33 Score=43.75 Aligned_cols=95 Identities=28% Similarity=0.399 Sum_probs=60.7
Q ss_pred HhcCCCEEEEec-----------CCHH----HHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEe
Q 021739 162 TITSLPILVKGV-----------LTAE----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLD 226 (308)
Q Consensus 162 ~~~~~Pv~vK~~-----------~~~e----~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~ 226 (308)
..+++|+++-.. .+++ -++.+.+.|+|.|.+.-.+ ..+...++.+.. .+||+.+
T Consensus 140 ~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVvia 208 (265)
T COG1830 140 HELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVPVVIA 208 (265)
T ss_pred HHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEEEe
Confidence 346899887322 1122 2568899999999863221 235566666665 4999999
Q ss_pred cCCCC--HHHHH----HHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHH
Q 021739 227 GGVRR--GTDVF----KALALGASGVFVGRPVPFSLAVDGEAGVRKVLQM 270 (308)
Q Consensus 227 GGI~~--~~d~~----k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~ 270 (308)
||=++ ..+++ .++..||.++.+||-++.. .-++++.+.+..
T Consensus 209 GG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~---~~p~~m~~Ai~~ 255 (265)
T COG1830 209 GGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQH---EDPEAMVKAIQA 255 (265)
T ss_pred CCCCCCChHHHHHHHHHHHHccCcchhhhhhhhcc---CChHHHHHHHHH
Confidence 99877 23333 4566899999999987764 334444333333
No 335
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.47 E-value=0.16 Score=46.75 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=57.0
Q ss_pred HHHHHHHcC-CcEEEEecccccCCCCCcc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEchH
Q 021739 178 DASLAIQYG-AAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRP 251 (308)
Q Consensus 178 ~a~~~~~~G-~d~i~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k----~l~~GAd~V~ig~~ 251 (308)
.++.+.+.| +|+|.+.|+.|....-... ..+.+..+.+...+++||++.=|-.+..|+++ +-.+|||++++..|
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P 105 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 105 (290)
T ss_pred HHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 346677899 9999988776543211111 12233445555566899988645444555543 23479999999999
Q ss_pred HHHhcccCCHHHHHHHHHHHHH
Q 021739 252 VPFSLAVDGEAGVRKVLQMLRD 273 (308)
Q Consensus 252 ~l~~~~~~G~~~v~~~i~~l~~ 273 (308)
.++.. .++++.+++..+.+
T Consensus 106 ~y~~~---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 106 FYYKF---SFPEIKHYYDTIIA 124 (290)
T ss_pred cCCCC---CHHHHHHHHHHHHh
Confidence 87752 34555555555443
No 336
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=95.46 E-value=0.086 Score=49.01 Aligned_cols=88 Identities=18% Similarity=0.384 Sum_probs=60.4
Q ss_pred CCCceEEeeecCC--chHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCch
Q 021739 62 PGIRFFQLYVTKH--RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSG 139 (308)
Q Consensus 62 ~~~~~~Ql~~~~d--~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~ 139 (308)
+-|..+.+..+.| .+.+.++++.+.++|++.|.|+.-++.. .
T Consensus 122 ~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q-------------------------------~----- 165 (309)
T PF01207_consen 122 PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ-------------------------------R----- 165 (309)
T ss_dssp SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC-------------------------------C-----
T ss_pred ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh-------------------------------c-----
Confidence 3467777776665 7888999999999999999888533221 0
Q ss_pred hhhHhhhhcccccCHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHHc-CCcEEEEe
Q 021739 140 LASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQY-GAAGIIVS 193 (308)
Q Consensus 140 ~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~~-G~d~i~v~ 193 (308)
......|+.++++++.+++||+.-+ +.+.++++.+.+. |+|+|.+.
T Consensus 166 --------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 166 --------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp --------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred --------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 1224468999999999999999876 4789999887766 99999874
No 337
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.45 E-value=2.1 Score=39.43 Aligned_cols=181 Identities=17% Similarity=0.134 Sum_probs=107.8
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHhc-------cCCC--CceEEeeecCCchH
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVSS-------TGPG--IRFFQLYVTKHRNV 77 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~--s---~~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~~ 77 (308)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ + |..+.+.+|..+ ...+ +.+.+.. ..+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~-~~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG-ALNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC-cchHHH
Confidence 47889999755445666666788888888876433 2 334556665332 1222 5566665 456677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHH
Q 021739 78 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 157 (308)
Q Consensus 78 ~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 157 (308)
..++.+.+++.|++++.+.. |.. + + .. + +-..+..
T Consensus 84 ai~~a~~A~~~Gad~v~v~p--P~y----------~--~---------------------~~-~---------~~l~~~f 118 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV--PYY----------N--K---------------------PN-Q---------EALYDHF 118 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC--ccC----------C--C---------------------CC-H---------HHHHHHH
Confidence 77788889999999987752 321 0 0 00 1 1123567
Q ss_pred HHHHHhc-CCCEEEEec-------CCHHHHHHHHH--cCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEec
Q 021739 158 KWLQTIT-SLPILVKGV-------LTAEDASLAIQ--YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 227 (308)
Q Consensus 158 ~~ir~~~-~~Pv~vK~~-------~~~e~a~~~~~--~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (308)
+.|.+.+ ++||++=.. ++++...++.+ -.+-+|.-+. .+...+.++......++.|+. |
T Consensus 119 ~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G 187 (294)
T TIGR02313 119 AEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-G 187 (294)
T ss_pred HHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c
Confidence 7788888 899886543 46777787764 2344444321 123334444444333454443 3
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHH
Q 021739 228 GVRRGTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 228 GI~~~~d~~k~l~~GAd~V~ig~~~ 252 (308)
....+...+.+||++++.|..-
T Consensus 188 ---~d~~~~~~l~~Ga~G~is~~~n 209 (294)
T TIGR02313 188 ---IELLCLPMLAIGAAGSIAATAN 209 (294)
T ss_pred ---chHHHHHHHHCCCCEEEecHHh
Confidence 2355667788999999988743
No 338
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.42 E-value=0.25 Score=46.34 Aligned_cols=77 Identities=22% Similarity=0.188 Sum_probs=48.9
Q ss_pred HHHHHHcCCcEEEEecccc----------cCC---CC---CcchHHHHHHHHHHc-cCCCeEEEecCCCC-HHH----HH
Q 021739 179 ASLAIQYGAAGIIVSNHGA----------RQL---DY---VPATVMALEEVVQAA-KGRVPVFLDGGVRR-GTD----VF 236 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg----------~~~---~~---~~~~~~~l~~i~~~~-~~~ipvia~GGI~~-~~d----~~ 236 (308)
++.+.+.|||.|.+--.+. ... +. .....+.++.+.+.+ .+++||+.+||=.. .+| +.
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 6788999999999853221 000 00 012233445555443 24799999999874 333 34
Q ss_pred HH---HHcCCCEEEEchHHHHh
Q 021739 237 KA---LALGASGVFVGRPVPFS 255 (308)
Q Consensus 237 k~---l~~GAd~V~ig~~~l~~ 255 (308)
.+ +..||.++.+||-+...
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIfQ~ 324 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAFQR 324 (348)
T ss_pred HHHHhhhcCCcchhhchhhhcC
Confidence 56 77899999999987764
No 339
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.36 E-value=0.078 Score=52.59 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+.++.|.++|+|.|.+....+.+ ....+.+.++++..+.+++| ..|-|-|++++..++.+|||++-+|
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~~----~~~~~~i~~ir~~~~~~~~V-~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGYS----EWQKRTLDWIREKYGDSVKV-GAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHhCCCeEeecCccccc----HHHHHHHHHHHHhCCCCceE-EeccccCHHHHHHHHHcCCCEEEEC
Confidence 55788999999999986433321 12356677777665323444 4488999999999999999998774
No 340
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.34 E-value=2.7 Score=39.99 Aligned_cols=191 Identities=20% Similarity=0.192 Sum_probs=102.6
Q ss_pred ceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCceEEeeecCCchHHHHHHHHHHHcCCcE
Q 021739 13 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKA 92 (308)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~ 92 (308)
+++++|-+. -..+.-...|+.+++.|+.+..... .. +. ..|..|| +...+....+.+.+++.|..+
T Consensus 120 ~~iaGpc~i---E~~~~~~~~A~~lk~~g~~~~r~~~--~k-----pR-tsp~~f~---g~~~e~l~~L~~~~~~~Gl~~ 185 (360)
T PRK12595 120 SFIFGPCSV---ESYEQVEAVAKALKAKGLKLLRGGA--FK-----PR-TSPYDFQ---GLGVEGLKILKQVADEYGLAV 185 (360)
T ss_pred eeEEecccc---cCHHHHHHHHHHHHHcCCcEEEccc--cC-----CC-CCCcccc---CCCHHHHHHHHHHHHHcCCCE
Confidence 345566322 1333446788888888888766411 10 00 1233444 555677777777788889876
Q ss_pred EEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEe
Q 021739 93 IALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG 172 (308)
Q Consensus 93 i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~ 172 (308)
+. ++ ........+ ..+ .+ .++.. + ..+ ..++.++++.+ ++.||++|.
T Consensus 186 ~t-~v---~d~~~~~~l-~~~-vd--------------~lkI~--s----~~~------~n~~LL~~~a~-~gkPVilk~ 232 (360)
T PRK12595 186 IS-EI---VNPADVEVA-LDY-VD--------------VIQIG--A----RNM------QNFELLKAAGR-VNKPVLLKR 232 (360)
T ss_pred EE-ee---CCHHHHHHH-HHh-CC--------------eEEEC--c----ccc------cCHHHHHHHHc-cCCcEEEeC
Confidence 52 32 211111111 111 11 11110 0 001 12466777764 589999997
Q ss_pred c--CCHHH----HHHHHHcCCcEEEEecccccCCC---CCcchHHHHHHHHHHccCCCeEEEecCCCCH----H--HHHH
Q 021739 173 V--LTAED----ASLAIQYGAAGIIVSNHGARQLD---YVPATVMALEEVVQAAKGRVPVFLDGGVRRG----T--DVFK 237 (308)
Q Consensus 173 ~--~~~e~----a~~~~~~G~d~i~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~----~--d~~k 237 (308)
. .+.++ +..+.+.|-+-|.+--+|-+... .....+..+..+++.. .+||+.+.+=..+ . -...
T Consensus 233 G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV~~d~~Hs~G~r~~~~~~a~a 310 (360)
T PRK12595 233 GLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPVMVDVTHSTGRRDLLLPTAKA 310 (360)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCEEEeCCCCCcchhhHHHHHHH
Confidence 6 36766 45566688866665432322111 1123567777777654 6899996543332 1 3345
Q ss_pred HHHcCCCEEEEchHH
Q 021739 238 ALALGASGVFVGRPV 252 (308)
Q Consensus 238 ~l~~GAd~V~ig~~~ 252 (308)
|+++|||++++-.=+
T Consensus 311 Ava~GAdg~~iE~H~ 325 (360)
T PRK12595 311 ALAIGADGVMAEVHP 325 (360)
T ss_pred HHHcCCCeEEEEecC
Confidence 678999999988744
No 341
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.8 Score=39.35 Aligned_cols=50 Identities=28% Similarity=0.400 Sum_probs=37.7
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHHHH
Q 021739 220 RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFE 276 (308)
Q Consensus 220 ~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~l~ 276 (308)
+.-+=.+||+. ++.+-++.++||+++..|++.+.+ ..+ .+++..++++..
T Consensus 169 ~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~a---~d~---~~vi~~lr~~v~ 218 (224)
T KOG3111|consen 169 NLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFGA---ADP---SDVISLLRNSVE 218 (224)
T ss_pred CceEEecCCcC-cchHHHHHHcCCCEEEecceeecC---CCH---HHHHHHHHHHHh
Confidence 55666999997 788999999999999999998764 223 245666665544
No 342
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.28 E-value=0.099 Score=49.22 Aligned_cols=87 Identities=25% Similarity=0.260 Sum_probs=48.8
Q ss_pred HHHHH--HcCCcEEEEeccccc----CCC------CCcchHHHHHHHHHHccCCCeEEE-ecCCCCHHHHHH----HHHc
Q 021739 179 ASLAI--QYGAAGIIVSNHGAR----QLD------YVPATVMALEEVVQAAKGRVPVFL-DGGVRRGTDVFK----ALAL 241 (308)
Q Consensus 179 a~~~~--~~G~d~i~v~~~gg~----~~~------~~~~~~~~l~~i~~~~~~~ipvia-~GGI~~~~d~~k----~l~~ 241 (308)
++.+. +.|+|.+.+--.+.. ... ......+.+.++.+.. .+|++. +||. +.++..+ ++..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 56666 499999998532110 000 0111123345554443 567555 7777 6666654 4457
Q ss_pred CC--CEEEEchHHHHhc----ccCCHHHHHHHH
Q 021739 242 GA--SGVFVGRPVPFSL----AVDGEAGVRKVL 268 (308)
Q Consensus 242 GA--d~V~ig~~~l~~~----~~~G~~~v~~~i 268 (308)
|| ++|.+||.....- ...|.+..++++
T Consensus 267 Ga~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l 299 (340)
T PRK12858 267 GADFSGVLCGRATWQDGIEPYAAEGEEARRAWL 299 (340)
T ss_pred CCCccchhhhHHHHhhhhccccCCCHHHHHHHH
Confidence 99 9999999876542 124554444444
No 343
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.25 E-value=0.17 Score=46.43 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=58.1
Q ss_pred HHHHHHHc-CCcEEEEecccccCCCCCc-chHHHHHHHHHHccCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEchH
Q 021739 178 DASLAIQY-GAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRP 251 (308)
Q Consensus 178 ~a~~~~~~-G~d~i~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k----~l~~GAd~V~ig~~ 251 (308)
.++.+.+. |+++|.+.++.|....-.. ...+.+..+.+...+++|||+.=|-.+..|+.+ +..+|||++++-.|
T Consensus 26 ~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P 105 (288)
T cd00954 26 IVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITP 105 (288)
T ss_pred HHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34667788 9999998877654221111 122334445555566899998444444555543 34589999999999
Q ss_pred HHHhcccCCHHHHHHHHHHHHHH
Q 021739 252 VPFSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 252 ~l~~~~~~G~~~v~~~i~~l~~~ 274 (308)
+.+. ..++++.+++..+.+.
T Consensus 106 ~y~~---~~~~~i~~~~~~v~~a 125 (288)
T cd00954 106 FYYK---FSFEEIKDYYREIIAA 125 (288)
T ss_pred CCCC---CCHHHHHHHHHHHHHh
Confidence 8764 2455555555555443
No 344
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.23 E-value=0.14 Score=47.70 Aligned_cols=78 Identities=13% Similarity=0.050 Sum_probs=55.8
Q ss_pred CCEEEEecCCHH---HHHHHHHcC--CcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHH
Q 021739 166 LPILVKGVLTAE---DASLAIQYG--AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 240 (308)
Q Consensus 166 ~Pv~vK~~~~~e---~a~~~~~~G--~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~ 240 (308)
+++.+-...+.+ .+..+.++| +|+|.+....|.+ ....+.+.++++.. ..|.+..|.|-+.+++..++.
T Consensus 83 L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s----~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~ 156 (321)
T TIGR01306 83 LFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHS----NSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELEN 156 (321)
T ss_pred cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCch----HHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHH
Confidence 344443334444 467788889 7999987643321 22456677777665 567788899999999999999
Q ss_pred cCCCEEEEc
Q 021739 241 LGASGVFVG 249 (308)
Q Consensus 241 ~GAd~V~ig 249 (308)
+|||++-+|
T Consensus 157 aGad~I~V~ 165 (321)
T TIGR01306 157 AGADATKVG 165 (321)
T ss_pred cCcCEEEEC
Confidence 999999877
No 345
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.21 E-value=0.19 Score=45.99 Aligned_cols=93 Identities=23% Similarity=0.334 Sum_probs=58.1
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCcc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 253 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k----~l~~GAd~V~ig~~~l 253 (308)
++.+.+.|+|+|.+.++.|....-... ..+.+..+.+...+++||++.=|=.+.+++++ +-.+|||+|++..|++
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 466778999999987765543211111 22334455555666899998666556666553 3347999999999987
Q ss_pred HhcccCCHHHHHHHHHHHHHH
Q 021739 254 FSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 254 ~~~~~~G~~~v~~~i~~l~~~ 274 (308)
+.. .++.+.+++..+.+.
T Consensus 105 ~~~---~~~~i~~~~~~i~~~ 122 (285)
T TIGR00674 105 NKP---TQEGLYQHFKAIAEE 122 (285)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 345555555554443
No 346
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.15 E-value=0.17 Score=46.43 Aligned_cols=92 Identities=24% Similarity=0.318 Sum_probs=56.3
Q ss_pred HHHHHHHcCCcEEEEecccccCCCCCcc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEchHH
Q 021739 178 DASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL----ALGASGVFVGRPV 252 (308)
Q Consensus 178 ~a~~~~~~G~d~i~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l----~~GAd~V~ig~~~ 252 (308)
.++.+.+.|+|++.+.++.|....-... ..+.+..+.+...+++|||+.=|=.+..++++.. .+|||++++..|+
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~ 106 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPY 106 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEEST
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccc
Confidence 4567788999999998766532111111 1233344455566689988866655666666433 4799999999998
Q ss_pred HHhcccCCHHHHHHHHHHHH
Q 021739 253 PFSLAVDGEAGVRKVLQMLR 272 (308)
Q Consensus 253 l~~~~~~G~~~v~~~i~~l~ 272 (308)
++. ...+++.++++.+.
T Consensus 107 ~~~---~s~~~l~~y~~~ia 123 (289)
T PF00701_consen 107 YFK---PSQEELIDYFRAIA 123 (289)
T ss_dssp SSS---CCHHHHHHHHHHHH
T ss_pred ccc---chhhHHHHHHHHHH
Confidence 764 23455555544443
No 347
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.13 E-value=0.12 Score=51.04 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
.+.++.+.++|+|.|.+....|++ ....+.+.++++.. .++|||+ |.+.|.+.+..++.+|||+|-+|-
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEECC
Confidence 356889999999999997654432 23455677776654 4699999 779999999999999999987553
No 348
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.11 E-value=0.23 Score=46.40 Aligned_cols=68 Identities=19% Similarity=0.089 Sum_probs=49.5
Q ss_pred HHHHHHHHH--cCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 176 AEDASLAIQ--YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 176 ~e~a~~~~~--~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
.+.+..+.+ +|+|+|++....|.+ ....+.+.++++.. ++++||+ |.|-|++-+...+.+|||+|=+|
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGhs----~~~i~~ik~ik~~~-P~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGYS----EHFVQFVAKAREAW-PDKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcH----HHHHHHHHHHHHhC-CCCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 355777777 599999997644331 22456677777665 3577666 89999999999888999987544
No 349
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.09 E-value=0.57 Score=40.50 Aligned_cols=88 Identities=22% Similarity=0.122 Sum_probs=54.7
Q ss_pred HHHHHHHHHhc-CCCEEEEe-cCCHH--HHHHHHHcCCcEEEEecccccCCCCCcchH-HHHHHHHHHccCCCeEEEe-c
Q 021739 154 WKDVKWLQTIT-SLPILVKG-VLTAE--DASLAIQYGAAGIIVSNHGARQLDYVPATV-MALEEVVQAAKGRVPVFLD-G 227 (308)
Q Consensus 154 ~~~i~~ir~~~-~~Pv~vK~-~~~~e--~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvia~-G 227 (308)
.+.++.+|+.. +.++++-. ..++. +++.+.++|+|+|.++... ...+. +.+..++ .. .++++.. -
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~------~~~~~~~~i~~~~-~~--g~~~~~~~~ 110 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA------DDATIKGAVKAAK-KH--GKEVQVDLI 110 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC------CHHHHHHHHHHHH-Hc--CCEEEEEec
Confidence 46788888874 44555432 23433 6899999999999876431 11122 2233333 22 5777764 3
Q ss_pred CCCCH-HHHHHHHHcCCCEEEEch
Q 021739 228 GVRRG-TDVFKALALGASGVFVGR 250 (308)
Q Consensus 228 GI~~~-~d~~k~l~~GAd~V~ig~ 250 (308)
+..+. +++..+..+|+|.|.+..
T Consensus 111 ~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 111 NVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred CCCChHHHHHHHHHcCCCEEEEcC
Confidence 44443 777788888999998853
No 350
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.08 E-value=0.65 Score=43.55 Aligned_cols=143 Identities=16% Similarity=0.232 Sum_probs=84.5
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
.+|.+...++++.+.++|++++=+..- +...+..... +.. .+.. .....+...-+... ...
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt~------~~~~~~~~~~-~~~----~~~~-----~~~~~~~~~~~~~~---~~~ 72 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTF------KAEDLVSKNA-PKA----EYQK-----INTGAEESQLEMLK---KLE 72 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeeeC------CHHHhhCccc-ccc----cccc-----cCCcCCCcHHHHHH---HhC
Confidence 567888999999999999998766531 1111110000 000 0000 00000111112221 133
Q ss_pred cCHHH---HHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 152 LNWKD---VKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 152 ~~~~~---i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
+.++. +.+.++..+++++. ..++.+.+..+.+.|++.+.|.... ...+..|..+++ ...|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~~-------~~n~pLL~~~A~---~gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSGE-------ITNAPLLKKIAR---FGKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECccc-------ccCHHHHHHHHh---cCCcEEEECC
Confidence 44444 44555556888763 4477888999999999999985431 234566666653 2689999999
Q ss_pred CCCHHHHHHHHH----cCCC
Q 021739 229 VRRGTDVFKALA----LGAS 244 (308)
Q Consensus 229 I~~~~d~~k~l~----~GAd 244 (308)
..+.+++..+++ .|..
T Consensus 142 matl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 142 MATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 999999998775 4664
No 351
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.07 E-value=0.21 Score=45.69 Aligned_cols=93 Identities=22% Similarity=0.335 Sum_probs=57.0
Q ss_pred HHHHHHHcCCcEEEEecccccCCCCCcc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 021739 178 DASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPV 252 (308)
Q Consensus 178 ~a~~~~~~G~d~i~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k----~l~~GAd~V~ig~~~ 252 (308)
.++.+.+.|++++.+.++.|....-... ..+.+..+.+.+.+++||++.=|=.+..++++ +-.+|||+|++..|.
T Consensus 26 ~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~ 105 (284)
T cd00950 26 LIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPY 105 (284)
T ss_pred HHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 3567778999999987665532211111 22334445555556789877555455666654 334799999999998
Q ss_pred HHhcccCCHHHHHHHHHHHHH
Q 021739 253 PFSLAVDGEAGVRKVLQMLRD 273 (308)
Q Consensus 253 l~~~~~~G~~~v~~~i~~l~~ 273 (308)
.+.. ..+++.++++.+.+
T Consensus 106 ~~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 106 YNKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred cCCC---CHHHHHHHHHHHHh
Confidence 7642 34555555555444
No 352
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.04 E-value=0.55 Score=42.10 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCCEEEEecC---CH----HHHHHHHHcCCcEEEEeccc-----c-cCCCCCcchHHHHHHH---HHHcc
Q 021739 155 KDVKWLQTITSLPILVKGVL---TA----EDASLAIQYGAAGIIVSNHG-----A-RQLDYVPATVMALEEV---VQAAK 218 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~---~~----e~a~~~~~~G~d~i~v~~~g-----g-~~~~~~~~~~~~l~~i---~~~~~ 218 (308)
+.++.|.+.+++||++=+-. +. +.++++.++|+++|.+-... | +......+.-+.+.++ +++..
T Consensus 59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~ 138 (243)
T cd00377 59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD 138 (243)
T ss_pred HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence 45777777788998876543 33 34678889999999994321 1 1001112333333333 33333
Q ss_pred C--CCeEEEe-----cCCCCHHHHH----HHHHcCCCEEEEchH
Q 021739 219 G--RVPVFLD-----GGVRRGTDVF----KALALGASGVFVGRP 251 (308)
Q Consensus 219 ~--~ipvia~-----GGI~~~~d~~----k~l~~GAd~V~ig~~ 251 (308)
. +++|++- -|=...++++ .+.++|||++++-.+
T Consensus 139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 3 6888886 2212334443 233489999998655
No 353
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.03 E-value=0.21 Score=46.01 Aligned_cols=92 Identities=18% Similarity=0.255 Sum_probs=58.1
Q ss_pred HHHHHH-cCCcEEEEecccccCCCCCcc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 021739 179 ASLAIQ-YGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPV 252 (308)
Q Consensus 179 a~~~~~-~G~d~i~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k----~l~~GAd~V~ig~~~ 252 (308)
++.+.+ .|+++|.+.++.|....-... ....+..+.+...+++|||+.=|-.+..|+.+ +-.+|||++++-.|+
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 466778 999999988776542211111 22334455566666899999666566676654 345899999999998
Q ss_pred HHhcccCCHHHHHHHHHHHHH
Q 021739 253 PFSLAVDGEAGVRKVLQMLRD 273 (308)
Q Consensus 253 l~~~~~~G~~~v~~~i~~l~~ 273 (308)
++.. .++++.+++..+.+
T Consensus 110 y~~~---~~~~l~~~f~~va~ 127 (293)
T PRK04147 110 YYPF---SFEEICDYYREIID 127 (293)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7642 34444444444433
No 354
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.01 E-value=2.8 Score=38.35 Aligned_cols=183 Identities=16% Similarity=0.119 Sum_probs=106.5
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHhc-------cCCC--CceEEeeecCCchH
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--SS---WATSSVEEVSS-------TGPG--IRFFQLYVTKHRNV 77 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~--s~---~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~~ 77 (308)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ ++ .-..+.+|..+ ...+ +.+++.. ..+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 46778888644445655556677777788876544 22 23445554331 2222 5566654 345677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHH
Q 021739 78 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 157 (308)
Q Consensus 78 ~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 157 (308)
+.++.+.+++.|++++.+.. |... + . +.+-..+..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p--P~y~------------~---------------------~----------~~~~i~~~~ 116 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT--PYYN------------K---------------------P----------TQEGLYQHF 116 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC--CcCC------------C---------------------C----------CHHHHHHHH
Confidence 77888899999999988752 3210 0 0 111123567
Q ss_pred HHHHHhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCC
Q 021739 158 KWLQTITSLPILVKGV-------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 230 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~-------~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (308)
+.+.+.+++||++=.. .+++...++.+.. ..+-+=.. ..+...+.++.+..+.++.++...
T Consensus 117 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~-~v~giK~s--------~~d~~~~~~l~~~~~~~~~v~~G~--- 184 (285)
T TIGR00674 117 KAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEP-NIVAIKEA--------TGNLERISEIKAIAPDDFVVLSGD--- 184 (285)
T ss_pred HHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCC-CEEEEEeC--------CCCHHHHHHHHHhcCCCeEEEECc---
Confidence 7787778899876542 5677888887643 22211111 112344455544443345554422
Q ss_pred CHHHHHHHHHcCCCEEEEchHHH
Q 021739 231 RGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
..-....+.+|+++.+.|...+
T Consensus 185 -d~~~~~~~~~G~~G~i~~~~~~ 206 (285)
T TIGR00674 185 -DALTLPMMALGGKGVISVTANV 206 (285)
T ss_pred -hHHHHHHHHcCCCEEEehHHHh
Confidence 2456678889999998777544
No 355
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=94.95 E-value=0.36 Score=44.04 Aligned_cols=95 Identities=21% Similarity=0.166 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCCEEEEe---cCCHHHHHHHHHcC-CcEEEEecccccCCCCCcchHHHHHHHHHHc----cCCCeEEEe
Q 021739 155 KDVKWLQTITSLPILVKG---VLTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAA----KGRVPVFLD 226 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~---~~~~e~a~~~~~~G-~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~----~~~ipvia~ 226 (308)
+.++.+++..+.|...|. ..+.+++..+.++| +|+|.+.+.+-.. ..+... +.+..+.+ ..++.++++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE---LDPAVL-ILKARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHH---HHHHHH-HHHHHHhhhhcCCCceEEEEe
Confidence 457777776543344553 25688899999999 9999887643111 011111 11111111 136789999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 227 GGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 227 GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
|||. .+.+......|.|.+++|+.+..
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~~ 272 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLHS 272 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCccccc
Confidence 9997 88888888899999999997754
No 356
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.95 E-value=0.29 Score=43.98 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
+.++...++||++|.|-.-+. +. ..+.+.+..+++.+ ++||+.-..|-++.++.++..+|||+|.+=-.++
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~--~F--~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQS--YF--GGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCC--cC--CCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 568888999999998754221 11 12467788887776 7999999999999999999999999996544433
No 357
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.89 E-value=0.18 Score=45.58 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=35.2
Q ss_pred CHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021739 153 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~~G~d~i~v~ 193 (308)
..+.++++|+.+++|+.++- +.+++.++++.++ +|++++.
T Consensus 193 ~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 193 VKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred HHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 35779999999999999984 5789999999999 9999884
No 358
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=94.85 E-value=0.44 Score=44.38 Aligned_cols=87 Identities=11% Similarity=0.251 Sum_probs=60.6
Q ss_pred CceEEeeecCC-chHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhh
Q 021739 64 IRFFQLYVTKH-RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 142 (308)
Q Consensus 64 ~~~~Ql~~~~d-~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~ 142 (308)
|.++-+-.+.+ .+...++++.++++|++.|.|+-.+... +
T Consensus 135 pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~---------~------------------------------ 175 (312)
T PRK10550 135 PVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED---------G------------------------------ 175 (312)
T ss_pred ceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc---------C------------------------------
Confidence 67777665433 3456788888889999998876322100 0
Q ss_pred HhhhhcccccCHHHHHHHHHhcCCCEEEEec-CCHHHHHHHH-HcCCcEEEEe
Q 021739 143 YVANQIDRSLNWKDVKWLQTITSLPILVKGV-LTAEDASLAI-QYGAAGIIVS 193 (308)
Q Consensus 143 ~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~-~~G~d~i~v~ 193 (308)
+- -+...|+.++++++.+++||+.-+- .+++++..+. +.|+|+|.+.
T Consensus 176 y~----g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 176 YR----AEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred CC----CCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 00 1123578999999999999887654 6899998876 5899999873
No 359
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=94.85 E-value=0.15 Score=44.92 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=44.2
Q ss_pred cCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 185 YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 185 ~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
.|...+-+--.++. +.|...+.+.++. ...++|..||||+++.+.++..+|||.+..|..+-.
T Consensus 163 ~g~~~~YlEagsga---~~Pv~~e~v~~v~----~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee 225 (240)
T COG1646 163 LGMPVVYLEAGSGA---GDPVPVEMVSRVL----SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE 225 (240)
T ss_pred hCCeEEEEEecCCC---CCCcCHHHHHHhh----ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence 46666655433322 2344455554443 245999999999999999999999999999987653
No 360
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=94.84 E-value=2.9 Score=37.72 Aligned_cols=98 Identities=11% Similarity=0.008 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecc-----cccCC-CC-----CcchHHHHHHHHHHc---cCC
Q 021739 155 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH-----GARQL-DY-----VPATVMALEEVVQAA---KGR 220 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~-----gg~~~-~~-----~~~~~~~l~~i~~~~---~~~ 220 (308)
+.++.+.+ -++++-+=.+++.+.+..+.++|+++|...-+ +.... .. +.+....+.++.+.. ..+
T Consensus 130 ~A~~~L~~-~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~ 208 (252)
T cd00439 130 PAIKDLIA-AGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKK 208 (252)
T ss_pred HHHHHHHH-CCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCC
Confidence 34455544 37888777789999999999999999986531 11000 00 113333333443322 234
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhc
Q 021739 221 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 256 (308)
Q Consensus 221 ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~ 256 (308)
..|++ ..+++..++.+++ |+|.|-+.-.++..+
T Consensus 209 tkiL~-AS~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 209 QRVLW-ASFSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred CeEEE-EeeCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 55544 4688999998765 999999888777654
No 361
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=94.84 E-value=0.12 Score=45.65 Aligned_cols=105 Identities=22% Similarity=0.317 Sum_probs=69.1
Q ss_pred CceEEeee-------cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCC
Q 021739 64 IRFFQLYV-------TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTD 136 (308)
Q Consensus 64 ~~~~Ql~~-------~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~ 136 (308)
..|+.|.. ..|+-.+.+..+.+.+.||..+--+-|-|+..+|.+|.--.-.+|..
T Consensus 98 t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~------------------ 159 (262)
T COG2022 98 TNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLG------------------ 159 (262)
T ss_pred CCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEecccc------------------
Confidence 45777764 34556667777777788998776666667766666554222222210
Q ss_pred CchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEE-ecCCHHHHHHHHHcCCcEEEE
Q 021739 137 DSGLASYVANQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIV 192 (308)
Q Consensus 137 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK-~~~~~e~a~~~~~~G~d~i~v 192 (308)
+..++- -.-.+...++-|++..++||+|- ++-++.++-.+.|.|+|+|.+
T Consensus 160 -aPIGSg-----~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 160 -APIGSG-----LGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred -ccccCC-----cCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 111110 11123567888999999999987 446889999999999999975
No 362
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.84 E-value=1.1 Score=42.70 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+....+.++|+|.|++....|.+ .-..+.+..+++.. +.++||+ |.+-|.+.+...+.+|||.+=+|
T Consensus 254 ~rl~ll~~aGvdvviLDSSqGnS----~~qiemik~iK~~y-P~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQGNS----IYQLEMIKYIKETY-PDLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HHHHHhhhcCCcEEEEecCCCcc----hhHHHHHHHHHhhC-CCceeec-cceeeHHHHHHHHHccCceeEec
Confidence 44678899999999997654432 12355667776654 4678887 77888999999999999975443
No 363
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=94.81 E-value=3.2 Score=38.00 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=71.3
Q ss_pred CCHHHHHHHHH-cCCcEEEEecccccCCCCC-c--chHHHHHHHHHHccCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 021739 174 LTAEDASLAIQ-YGAAGIIVSNHGARQLDYV-P--ATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGVFV 248 (308)
Q Consensus 174 ~~~e~a~~~~~-~G~d~i~v~~~gg~~~~~~-~--~~~~~l~~i~~~~~~~ipvia~GGI~~~-~d~~k~l~~GAd~V~i 248 (308)
.+++++....+ .|+|.+.++...-+..+.+ . -.++.|.++.+.+ ++|++.=||=..+ +++.+++..|..-+-+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 45788876664 7999999875322222211 2 3678889998887 7999998877666 5588899999999999
Q ss_pred chHHHHhcc-------cC-----CH-HHHHHHHHHHHHHHHHHHHHcCC
Q 021739 249 GRPVPFSLA-------VD-----GE-AGVRKVLQMLRDEFELTMALSGC 284 (308)
Q Consensus 249 g~~~l~~~~-------~~-----G~-~~v~~~i~~l~~~l~~~m~~~G~ 284 (308)
++.+..+.. .. .+ .-.....+.+.+.++..|+.+|.
T Consensus 226 ~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 226 NTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 997755421 00 00 11233344556666666666654
No 364
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=94.74 E-value=0.47 Score=43.52 Aligned_cols=117 Identities=22% Similarity=0.230 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHc-----cCCCeEE-EecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA-----KGRVPVF-LDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvi-a~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
+++..+.+.|+..|+++.++........|.+-++..+.+++ +.++-|| =+|-+|+.-|+.-.+-.|||+|.=--
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 35788889999999998765221111234455555555443 3345554 56779999999998889999986222
Q ss_pred HH--HHhcccCC-------HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021739 251 PV--PFSLAVDG-------EAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 293 (308)
Q Consensus 251 ~~--l~~~~~~G-------~~~v~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (308)
+| +..+...| ++.+.++...+.++|...|..+|.+.++--++.
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~ga 277 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGA 277 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccc
Confidence 22 11222223 367889999999999999999999988876654
No 365
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.69 E-value=3.4 Score=37.79 Aligned_cols=181 Identities=20% Similarity=0.180 Sum_probs=105.7
Q ss_pred ceEeccccCcccCCCHHHHHHHHHHHHcCCceeec--C---CCCCCHHHHhc-------c-CCC-CceEEeeecCCchHH
Q 021739 13 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS--S---WATSSVEEVSS-------T-GPG-IRFFQLYVTKHRNVD 78 (308)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s--~---~~~~~~e~i~~-------~-~~~-~~~~Ql~~~~d~~~~ 78 (308)
|..+.|+.-.+-.+.+.-..+.+-+.+.|+...+- + ..+.+.+|..+ . ... +.++++. ..+.+..
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 56777876544345555567788888888864432 2 23445554332 1 222 5677776 5577888
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHH
Q 021739 79 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 158 (308)
Q Consensus 79 ~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 158 (308)
.++++.+++.|++++.+.. |... +. + ++ -..+..+
T Consensus 86 i~~a~~a~~~Gad~v~v~~--P~~~--------------~~------------------s--~~---------~l~~y~~ 120 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP--PYYF--------------KP------------------S--QE---------ELIDYFR 120 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE--STSS--------------SC------------------C--HH---------HHHHHHH
T ss_pred HHHHHHHhhcCceEEEEec--cccc--------------cc------------------h--hh---------HHHHHHH
Confidence 8889999999999988763 4320 00 0 11 1235678
Q ss_pred HHHHhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCC
Q 021739 159 WLQTITSLPILVKGV-------LTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 230 (308)
Q Consensus 159 ~ir~~~~~Pv~vK~~-------~~~e~a~~~~~~G-~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (308)
.+.+.+++|+++=.. ++++...++.+.. +-++..+. .+...+.++.+....++.++. |
T Consensus 121 ~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~----------~~~~~~~~~~~~~~~~~~v~~-G--- 186 (289)
T PF00701_consen 121 AIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSS----------GDLERLIQLLRAVGPDFSVFC-G--- 186 (289)
T ss_dssp HHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESS----------SBHHHHHHHHHHSSTTSEEEE-S---
T ss_pred HHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCc----------hhHHHHHHHhhhcccCeeeec-c---
Confidence 888888999987543 4567777777732 22222111 123444455555545565553 4
Q ss_pred CHHHHHHHHHcCCCEEEEchHHH
Q 021739 231 RGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
+...+...+.+|+++++.+.+-+
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~ 209 (289)
T PF00701_consen 187 DDELLLPALAAGADGFISGLANV 209 (289)
T ss_dssp SGGGHHHHHHTTSSEEEESGGGT
T ss_pred ccccccccccccCCEEEEccccc
Confidence 44557888999999999888644
No 366
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=94.67 E-value=0.78 Score=42.15 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=73.8
Q ss_pred CCHHHHHHHH-HcCCcEEEEecccccCCCCCc--chHHHHHHHHHHccCCCeEEEecCCCCH-HHHHHHHHcCCCEEEEc
Q 021739 174 LTAEDASLAI-QYGAAGIIVSNHGARQLDYVP--ATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGVFVG 249 (308)
Q Consensus 174 ~~~e~a~~~~-~~G~d~i~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvia~GGI~~~-~d~~k~l~~GAd~V~ig 249 (308)
.+++++.... +.|+|.+-++.+.-+..+.+. -.++.|.++.+.+ ++|++.=||=..+ +++.+++.+|..=|-++
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4678887665 589999998753322222232 3577888888877 7999998876665 77888999999999999
Q ss_pred hHHHHhcc-------cCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 250 RPVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 250 ~~~l~~~~-------~~G------~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
+-+-.+.. ... ..-.....+.+.+.++..|+.+|..
T Consensus 234 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 234 TENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred hHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 97654321 000 1223344455667777777777754
No 367
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.64 E-value=0.2 Score=46.13 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=35.0
Q ss_pred cCHHHHHHHHHhcCCCEEE-EecCCHHHHHHHHHcCCcEEEEe
Q 021739 152 LNWKDVKWLQTITSLPILV-KGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 152 ~~~~~i~~ir~~~~~Pv~v-K~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
..++.++++++.+++||+. .++.+++++.++.++|||+|.+.
T Consensus 221 ~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 221 IALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 3467889999988999885 45579999999999999999874
No 368
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.64 E-value=0.36 Score=44.31 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=57.3
Q ss_pred HHHHHHHcCCcEEEEecccccCCCCCcc-hHHHHHHHHHHccCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 021739 178 DASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPV 252 (308)
Q Consensus 178 ~a~~~~~~G~d~i~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k----~l~~GAd~V~ig~~~ 252 (308)
.++.+.+.|++++.+.++.|....-... ..+.+..+.+.+.+++||++.=|=.+..|+++ +-.+|||+|++..|.
T Consensus 27 ~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 27 LVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred HHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 3466778999999987665532211111 22334555566666789886544445555553 234799999999998
Q ss_pred HHhcccCCHHHHHHHHHHHHHH
Q 021739 253 PFSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 253 l~~~~~~G~~~v~~~i~~l~~~ 274 (308)
++.. .++++.++++.+.+.
T Consensus 107 ~~~~---~~~~i~~~~~~ia~~ 125 (292)
T PRK03170 107 YNKP---TQEGLYQHFKAIAEA 125 (292)
T ss_pred CCCC---CHHHHHHHHHHHHhc
Confidence 7642 455555555555443
No 369
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.78 Score=40.44 Aligned_cols=119 Identities=18% Similarity=0.289 Sum_probs=75.4
Q ss_pred CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccC
Q 021739 74 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 153 (308)
Q Consensus 74 d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 153 (308)
+.+.+.+-++.++++|++++++++-++ |-..+
T Consensus 71 E~~iM~~DI~~~~~lG~~GVV~G~lt~------------------------------------------------dg~iD 102 (241)
T COG3142 71 ELEIMLEDIRLARELGVQGVVLGALTA------------------------------------------------DGNID 102 (241)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEeeecC------------------------------------------------CCccC
Confidence 346777778889999999998874211 22223
Q ss_pred HHHHHHHHHhc-CCCEEEEec----CCH-HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEec
Q 021739 154 WKDVKWLQTIT-SLPILVKGV----LTA-EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 227 (308)
Q Consensus 154 ~~~i~~ir~~~-~~Pv~vK~~----~~~-e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (308)
.+.++++.+.. +++|..--. .++ +..+.+.+.|+.-|.-|+ |.. ........|.++.+..++++.|++.|
T Consensus 103 ~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsG--g~~--sa~eg~~~l~~li~~a~gri~Im~Ga 178 (241)
T COG3142 103 MPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSG--GKA--SALEGLDLLKRLIEQAKGRIIIMAGA 178 (241)
T ss_pred HHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCC--CcC--chhhhHHHHHHHHHHhcCCEEEEeCC
Confidence 45566666554 677766543 344 346899999999997544 221 11223344555555555688899999
Q ss_pred CCCCHHHHHHH-HHcCCCE
Q 021739 228 GVRRGTDVFKA-LALGASG 245 (308)
Q Consensus 228 GI~~~~d~~k~-l~~GAd~ 245 (308)
||+ ++.+... ...|+.-
T Consensus 179 GV~-~~N~~~l~~~tg~~e 196 (241)
T COG3142 179 GVR-AENIAELVLLTGVTE 196 (241)
T ss_pred CCC-HHHHHHHHHhcCchh
Confidence 997 7777776 3467543
No 370
>PLN02979 glycolate oxidase
Probab=94.55 E-value=0.35 Score=45.81 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=62.8
Q ss_pred CHHHHHHHHHhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEecc----ccc-----------------CCC----
Q 021739 153 NWKDVKWLQTITSLPILVKGVL------TAEDASLAIQYGAAGIIVSNH----GAR-----------------QLD---- 201 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~~------~~e~a~~~~~~G~d~i~v~~~----gg~-----------------~~~---- 201 (308)
++|.|.+ ..+-|.+..... +.+..+++.++|+.+|.++.- |.+ ...
T Consensus 111 slEeIa~---a~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~ 187 (366)
T PLN02979 111 SVEEVAS---TGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDL 187 (366)
T ss_pred CHHHHHh---ccCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccc
Confidence 3555543 334577777653 345578899999999988531 100 000
Q ss_pred -------------------CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 202 -------------------YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 202 -------------------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
....+|+.|.++++.. ++|||. .||.+.+|+.++.++|+|++.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 188 GKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred cCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 0124677788887655 799888 567899999999999999998875
No 371
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=94.52 E-value=0.64 Score=42.03 Aligned_cols=42 Identities=33% Similarity=0.386 Sum_probs=36.3
Q ss_pred CHHHHHHHHHhcCCCEEEEecC-CHHHHHHHHHcCCcEEEEec
Q 021739 153 NWKDVKWLQTITSLPILVKGVL-TAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~~-~~e~a~~~~~~G~d~i~v~~ 194 (308)
..+.++++|+.++.||.+.... ++++++.+.++|+|++++..
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 4678999999889999998754 69999999999999998743
No 372
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.50 E-value=0.46 Score=43.64 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=36.2
Q ss_pred ccCHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEe
Q 021739 151 SLNWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~ 193 (308)
...++.++++++.+++||+.-+. .+++++..+.++|+|+|.+.
T Consensus 217 ~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 217 PIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred hHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 34678899999988999887554 68999999999999999874
No 373
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=94.46 E-value=1.6 Score=38.29 Aligned_cols=44 Identities=18% Similarity=0.435 Sum_probs=38.5
Q ss_pred cccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEe
Q 021739 150 RSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 150 ~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
+...++.++++++...+|+++=+..+++.+..+.++|+|+|.+.
T Consensus 143 ~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 143 PPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred CccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 34467889999998889998888899999999999999999874
No 374
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=94.37 E-value=0.029 Score=47.64 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=78.9
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
..|...+.++++++++.|-. +.+|+|-= . +++. ...+=+++.....++
T Consensus 27 ~g~I~~l~~~v~~~~~~gK~-vfVHiDli-~---------Gl~~---------------------D~~~i~~L~~~~~~d 74 (175)
T PF04309_consen 27 TGDIGNLKDIVKRLKAAGKK-VFVHIDLI-E---------GLSR---------------------DEAGIEYLKEYGKPD 74 (175)
T ss_dssp SEECCCHHHHHHHHHHTT-E-EEEECCGE-E---------TB-S---------------------SHHHHHHHHHTT--S
T ss_pred cCcHHHHHHHHHHHHHcCCE-EEEEehhc-C---------CCCC---------------------CHHHHHHHHHcCCCc
Confidence 56777888899999998854 56898721 1 1110 011112332222222
Q ss_pred --c--CHHHHHHHHHhcCCCEEEEec-CC---HHH-HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCe
Q 021739 152 --L--NWKDVKWLQTITSLPILVKGV-LT---AED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 222 (308)
Q Consensus 152 --~--~~~~i~~ir~~~~~Pv~vK~~-~~---~e~-a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 222 (308)
. -...++..++ .++.-+-+.. .+ .+. .+.+.+...|+|.+-.. .....+.++++.+ ++|
T Consensus 75 GIISTk~~~i~~Ak~-~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEilPg---------~~p~vi~~i~~~~--~~P 142 (175)
T PF04309_consen 75 GIISTKSNLIKRAKK-LGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEILPG---------VMPKVIKKIREET--NIP 142 (175)
T ss_dssp EEEESSHHHHHHHHH-TT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEESC---------CHHHHHCCCCCCC--SS-
T ss_pred EEEeCCHHHHHHHHH-cCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEchH---------HHHHHHHHHHHhc--CCC
Confidence 1 2456666665 3555555543 22 233 46677889999987421 1123344333333 699
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
+|+.|=|++.+|+.++|..||++|....+-+|
T Consensus 143 iIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 143 IIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred EEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 99999999999999999999999998887665
No 375
>PLN02535 glycolate oxidase
Probab=94.35 E-value=0.45 Score=45.25 Aligned_cols=87 Identities=18% Similarity=0.325 Sum_probs=60.2
Q ss_pred HHHhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEecc----cccC--------------CC--------------
Q 021739 160 LQTITSLPILVKGVL------TAEDASLAIQYGAAGIIVSNH----GARQ--------------LD-------------- 201 (308)
Q Consensus 160 ir~~~~~Pv~vK~~~------~~e~a~~~~~~G~d~i~v~~~----gg~~--------------~~-------------- 201 (308)
+.+..+-|.+..... +.+..+++.++|+.+|.+..- |.+. ..
T Consensus 118 va~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~ 197 (364)
T PLN02535 118 VASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSG 197 (364)
T ss_pred HHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcccccc
Confidence 334445678887763 235578889999999988531 1000 00
Q ss_pred ---------CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 202 ---------YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 202 ---------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
....+|+.+.++++.. ++|||+ .||.+++|+.++..+|+|+|.+.
T Consensus 198 ~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 198 LEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred HHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0124677777777654 689887 67899999999999999999885
No 376
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.24 E-value=4.2 Score=37.01 Aligned_cols=181 Identities=19% Similarity=0.177 Sum_probs=106.9
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHhc-------cCCC--CceEEeeecCCchH
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--SS---WATSSVEEVSS-------TGPG--IRFFQLYVTKHRNV 77 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~--s~---~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~~ 77 (308)
.|..+.|+.-.+-.+.++-..+.+-+.+.|+...+ ++ .-..+.+|..+ ...+ +.++++. ..+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHH
Confidence 46778888655445666667788888888976543 22 23455555332 2222 5566665 456778
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHH
Q 021739 78 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 157 (308)
Q Consensus 78 ~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 157 (308)
..++++.+++.|++++.+.- |... + . +.+-..+..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~--P~~~------------~---------------------~----------~~~~l~~~~ 118 (284)
T cd00950 84 AIELTKRAEKAGADAALVVT--PYYN------------K---------------------P----------SQEGLYAHF 118 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcc--cccC------------C---------------------C----------CHHHHHHHH
Confidence 88888999999999987652 3210 0 0 011123567
Q ss_pred HHHHHhcCCCEEEEec-------CCHHHHHHHHHc-CCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCC
Q 021739 158 KWLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 229 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~-------~~~e~a~~~~~~-G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (308)
+.|.+.+++||++=.. ++++...++.+. .+-+|.-+ . .+...+.++.+..+.++.++. |
T Consensus 119 ~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s--~--------~~~~~~~~~~~~~~~~~~v~~-G-- 185 (284)
T cd00950 119 KAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEA--T--------GDLDRVSELIALCPDDFAVLS-G-- 185 (284)
T ss_pred HHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEEC--C--------CCHHHHHHHHHhCCCCeEEEe-C--
Confidence 7777777899886532 567777777764 12223211 1 123344445444444555443 3
Q ss_pred CCHHHHHHHHHcCCCEEEEchHH
Q 021739 230 RRGTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig~~~ 252 (308)
....+...+.+|+++.+.|..-
T Consensus 186 -~d~~~~~~~~~G~~G~~s~~~n 207 (284)
T cd00950 186 -DDALTLPFLALGGVGVISVAAN 207 (284)
T ss_pred -ChHhHHHHHHCCCCEEEehHHH
Confidence 1244667788999999888753
No 377
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=94.14 E-value=0.42 Score=45.04 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=59.7
Q ss_pred CceEEeee------cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCC
Q 021739 64 IRFFQLYV------TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDD 137 (308)
Q Consensus 64 ~~~~Ql~~------~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~ 137 (308)
+..+.+.. +.+.+...++++.+++.|++.|.|+.+.... + ..
T Consensus 209 ~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~-~~------------------ 256 (337)
T PRK13523 209 PLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------A-RI------------------ 256 (337)
T ss_pred CeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------C-CC------------------
Confidence 55665553 1256677788888888999999888653211 0 00
Q ss_pred chhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 021739 138 SGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYG-AAGIIV 192 (308)
Q Consensus 138 ~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G-~d~i~v 192 (308)
+ ..+.+.++..+++|+.+++||++-+. .+++++..+++.| +|.|.+
T Consensus 257 ---~------~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 257 ---D------VYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred ---C------CCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 0 01122466788899999999877655 5899999999877 999854
No 378
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=94.00 E-value=0.7 Score=42.84 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=61.5
Q ss_pred HHHHHHHHhcC--CCEEEEec-CC--HHHHHHHHHc---CCcEEEEecccccCCCCCcchHHHHHHHHHHc---c-CCCe
Q 021739 155 KDVKWLQTITS--LPILVKGV-LT--AEDASLAIQY---GAAGIIVSNHGARQLDYVPATVMALEEVVQAA---K-GRVP 222 (308)
Q Consensus 155 ~~i~~ir~~~~--~Pv~vK~~-~~--~e~a~~~~~~---G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~---~-~~ip 222 (308)
+.++..++..+ .|+.+=.- .. .+++..+.++ ++|.|.+.+.++.. | ...+.+.++++++ . .++.
T Consensus 172 ~A~~~~~~~~p~~~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~---G-~~~~~~~~~~~~l~~~g~~~~~ 247 (302)
T cd01571 172 EAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRR---G-VFRYLIREVRWALDIRGYKHVK 247 (302)
T ss_pred HHHHHHHHHCCCcCCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCC---C-CHHHHHHHHHHHHHhCCCCCeE
Confidence 45677776654 46554321 22 3355666665 48999988754210 1 1334444444443 2 4588
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 223 VFLDGGVRRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 223 via~GGI~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
|++|||| |.+.+.+....|+|.+.+|+.+..
T Consensus 248 ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 248 IFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred EEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 9999999 699999998999999999997654
No 379
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=93.99 E-value=0.36 Score=42.67 Aligned_cols=41 Identities=7% Similarity=0.222 Sum_probs=32.9
Q ss_pred CHHHHHHHHHhc-----CCCEEEEecCCHHHHHHHHHcCCcEEEEe
Q 021739 153 NWKDVKWLQTIT-----SLPILVKGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 153 ~~~~i~~ir~~~-----~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
.++.++++++.. ++||.+=+..+.+.+..+.++|||.+++.
T Consensus 150 ~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 150 TLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 356677777654 38888877788999999999999999875
No 380
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.93 E-value=0.56 Score=43.93 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=48.9
Q ss_pred HHHHHHHHcCC--cEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 177 EDASLAIQYGA--AGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 177 e~a~~~~~~G~--d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+.+..+.++|+ |.|.+....+. .....+.+.++++.. +++|||+ |.|.|.+++..+..+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh----~~~~~e~I~~ir~~~-p~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGH----SDSVINMIQHIKKHL-PETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----hHHHHHHHHHHHhhC-CCCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 56888999965 99998654321 123445677777654 2466665 66889999999999999998876
No 381
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.92 E-value=0.54 Score=44.74 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 205 ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 205 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
.+|+.|.++++.. ++|||. .||.+++|+.++..+|+|+|.+..
T Consensus 211 ~tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 211 LSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 3677788887654 799888 567899999999999999998874
No 382
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=93.82 E-value=0.2 Score=46.59 Aligned_cols=105 Identities=26% Similarity=0.370 Sum_probs=67.2
Q ss_pred CceEEeeecCCc----hHHHHHHHHHHHc---CCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCC
Q 021739 64 IRFFQLYVTKHR----NVDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTD 136 (308)
Q Consensus 64 ~~~~Ql~~~~d~----~~~~~~~~~~~~~---g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~ 136 (308)
..|+.|..-.|+ ....+.+++++.. |+..+.+..|.|+.+++..++.-.-.+|. ..-+
T Consensus 165 ~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl---------------~~pI 229 (326)
T PRK11840 165 WDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL---------------GAPI 229 (326)
T ss_pred CCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeec---------------cccc
Confidence 568888754432 2233455555555 99987788888887777666521111110 0011
Q ss_pred CchhhhHhhhhcccccCHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 021739 137 DSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIV 192 (308)
Q Consensus 137 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~~G~d~i~v 192 (308)
|++.+ + ...+.|+.+++..++||++-- +.+++++..+.+.|+|++-+
T Consensus 230 Gsg~g--v-------~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 230 GSGLG--I-------QNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred cCCCC--C-------CCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 22111 1 135778888888899999884 57899999999999999976
No 383
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.76 E-value=3.2 Score=37.07 Aligned_cols=154 Identities=14% Similarity=0.179 Sum_probs=84.2
Q ss_pred CchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccC
Q 021739 74 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 153 (308)
Q Consensus 74 d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 153 (308)
+.+...++++.+.+.|++.|.++...|.. .+ |. ....
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~---------------~~--------------------------p~--~~~~ 53 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPK---------------AV--------------------------PQ--MEDD 53 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcc---------------cc--------------------------cc--CCCH
Confidence 56777888899999999999887533211 00 00 1123
Q ss_pred HHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc-----CCCCCc-chHHHHHHHHHHcc-CCCeEEE
Q 021739 154 WKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR-----QLDYVP-ATVMALEEVVQAAK-GRVPVFL 225 (308)
Q Consensus 154 ~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~-----~~~~~~-~~~~~l~~i~~~~~-~~ipvia 225 (308)
++.++.+++.. +.++.+=.....++++.+.++|++.|.++..+.. ....+. ..++.+.+..+..+ ..+++..
T Consensus 54 ~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 133 (265)
T cd03174 54 WEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEG 133 (265)
T ss_pred HHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 67788888865 4555432223378899999999999998764320 000111 11222222222111 1334333
Q ss_pred ec-CC----CCHHHHH----HHHHcCCCEEEEchHHHHhcccCCHHHHHHHHHHHHHH
Q 021739 226 DG-GV----RRGTDVF----KALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDE 274 (308)
Q Consensus 226 ~G-GI----~~~~d~~----k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~ 274 (308)
+- .+ .+.+++. ++.++|++.+.+.-..- .--++.+.++++.+++.
T Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G----~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 134 SLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG----LATPEEVAELVKALREA 187 (265)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC----CcCHHHHHHHHHHHHHh
Confidence 33 23 4444443 34458999988765421 12355565665555544
No 384
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=93.75 E-value=6.1 Score=37.12 Aligned_cols=232 Identities=16% Similarity=0.180 Sum_probs=116.0
Q ss_pred ceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-C------Cce-----EEee--ecCCchHH
Q 021739 13 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-G------IRF-----FQLY--VTKHRNVD 78 (308)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~-~------~~~-----~Ql~--~~~d~~~~ 78 (308)
|++||=++.....+-+--..+.++|++.|+..+ = +.+...+++..... . ..| +.+| ..-.+++.
T Consensus 1 ~~iIAEig~NH~Gdl~~A~~lI~~A~~aGadaV-K-fQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 78 (329)
T TIGR03569 1 TFIIAEAGVNHNGSLELAKKLVDAAAEAGADAV-K-FQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDH 78 (329)
T ss_pred CEEEEEeCCCccCcHHHHHHHHHHHHHhCCCEE-E-eeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHH
Confidence 678888877633322222458889999998753 2 22233443332111 1 011 1111 12245777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhccccc-CHHHH
Q 021739 79 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NWKDV 157 (308)
Q Consensus 79 ~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~i 157 (308)
..+.+.+++.|..++- + |..- ..-+.-..+..| .++-. + .+. .+..|
T Consensus 79 ~~L~~~~~~~Gi~~~s-t---pfd~-~svd~l~~~~v~--------------~~KIa--S-----------~~~~n~pLL 126 (329)
T TIGR03569 79 RELKEYCESKGIEFLS-T---PFDL-ESADFLEDLGVP--------------RFKIP--S-----------GEITNAPLL 126 (329)
T ss_pred HHHHHHHHHhCCcEEE-E---eCCH-HHHHHHHhcCCC--------------EEEEC--c-----------ccccCHHHH
Confidence 7888888999987653 2 3221 111221222222 11110 0 111 36678
Q ss_pred HHHHHhcCCCEEEEec-CCHHH----HHHHHHcCCc---EEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCC
Q 021739 158 KWLQTITSLPILVKGV-LTAED----ASLAIQYGAA---GIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 229 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~-~~~e~----a~~~~~~G~d---~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (308)
+.+.+ +++||+++.. .+.++ +..+.+.|.+ .+.++-...+........+..+..+++.. .+||..++ =
T Consensus 127 ~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~Sd-H 202 (329)
T TIGR03569 127 KKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGYSD-H 202 (329)
T ss_pred HHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEECC-C
Confidence 88765 5899999965 45554 3455667875 44443222211111123455666666655 58998864 2
Q ss_pred CCHHH-HHHHHHcCCCEEEEchHHHHhcccCCHHH---H-HHHHHHHHHHHHHHHHHcCC
Q 021739 230 RRGTD-VFKALALGASGVFVGRPVPFSLAVDGEAG---V-RKVLQMLRDEFELTMALSGC 284 (308)
Q Consensus 230 ~~~~d-~~k~l~~GAd~V~ig~~~l~~~~~~G~~~---v-~~~i~~l~~~l~~~m~~~G~ 284 (308)
..+.. ...|.++||+ +|=+=|-..-...|++. + -+-+..|.+.++..-..+|.
T Consensus 203 t~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~ 260 (329)
T TIGR03569 203 TLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGD 260 (329)
T ss_pred CccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 22222 3355678998 33332211111122211 0 13456677777777777774
No 385
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.72 E-value=0.89 Score=39.89 Aligned_cols=42 Identities=21% Similarity=0.571 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHc-CCcEEEEe
Q 021739 152 LNWKDVKWLQTITSLPILVKGV-LTAEDASLAIQY-GAAGIIVS 193 (308)
Q Consensus 152 ~~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~-G~d~i~v~ 193 (308)
..|+.++++++.+++||++-+. .+++++..+.+. |+|+|.+.
T Consensus 170 ~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 170 ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 3578899999989999988664 589999999887 89999763
No 386
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=93.67 E-value=2.2 Score=39.18 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=72.2
Q ss_pred CCHHHHHHHH-HcCCcEEEEecccccCCCCC--cchHHHHHHHHHHccCCCeEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 021739 174 LTAEDASLAI-QYGAAGIIVSNHGARQLDYV--PATVMALEEVVQAAKGRVPVFLDGG--VRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 174 ~~~e~a~~~~-~~G~d~i~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvia~GG--I~~~~d~~k~l~~GAd~V~i 248 (308)
.+++++.... +.|+|.+-++.+.-+..+.+ .-.++.|.++++.+ ++|++.=|| +. .+++.+++.+|..=|-+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~-~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV--DVPLVLHGASDVP-DEFVRRTIELGVTKVNV 231 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCC-HHHHHHHHHcCCeEEEe
Confidence 3678877665 57999999875332222222 23678889998877 789888775 54 57788899999999999
Q ss_pred chHHHHhccc-------C---C---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 249 GRPVPFSLAV-------D---G---EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 249 g~~~l~~~~~-------~---G---~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
++-+..+... + . ..-.....+.+++.++..|+.+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 232 ATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977554210 0 0 1123344455667777777777754
No 387
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=93.64 E-value=5.7 Score=36.43 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=106.3
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHhc-------cCCC--CceEEeeecCCchH
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVSS-------TGPG--IRFFQLYVTKHRNV 77 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~--s---~~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~~ 77 (308)
.|.++.|+.-.+-.+.++-..+.+.+.+.|+...+ + |+...+.||..+ ...+ +.+.+.. . +.+.
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 36678888654445666666788888888976543 2 234556655332 1222 6677765 3 6677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHH
Q 021739 78 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 157 (308)
Q Consensus 78 ~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 157 (308)
..++.+.+++.|++++.+.. |... + . +.+-..+..
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p--P~y~--------------~-------------------~----------~~~~i~~~f 117 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP--PYLT--------------E-------------------A----------PQEGLYAHV 117 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCCC--------------C-------------------C----------CHHHHHHHH
Confidence 77888999999999987642 3210 0 0 011123567
Q ss_pred HHHHHhcCCCEEEEec----CCHHHHHHHHH-c-CCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 158 KWLQTITSLPILVKGV----LTAEDASLAIQ-Y-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~----~~~e~a~~~~~-~-G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
+++.+.+++||++=.. ++++...++.+ . .+-+|.-+ . .++..+.++.+..++++.|+. |-.+
T Consensus 118 ~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pnivgiKds--~--------~d~~~~~~~~~~~~~~~~v~~--G~~~ 185 (289)
T cd00951 118 EAVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVGFKDG--V--------GDIELMRRIVAKLGDRLLYLG--GLPT 185 (289)
T ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEEEEEeC--C--------CCHHHHHHHHHhcCCCeEEEe--CCCc
Confidence 7777778899887533 56788888876 3 23333321 1 133444455444433443333 3332
Q ss_pred HHH-HHHHHHcCCCEEEEchHH
Q 021739 232 GTD-VFKALALGASGVFVGRPV 252 (308)
Q Consensus 232 ~~d-~~k~l~~GAd~V~ig~~~ 252 (308)
.++ +..++.+||++++-|.+-
T Consensus 186 ~d~~~~~~l~~Ga~G~is~~~n 207 (289)
T cd00951 186 AEVFALAYLAMGVPTYSSAVFN 207 (289)
T ss_pred chHhHHHHHHCCCCEEEechhh
Confidence 233 567788999998877544
No 388
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.59 E-value=0.78 Score=42.29 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021739 151 SLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~~G~d~i~v~ 193 (308)
+..++.++++++.+++||+.=+ +.+.+++..+..+|+|+|.+.
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 3468889999998899988654 468999999999999999874
No 389
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.43 E-value=2.1 Score=38.79 Aligned_cols=41 Identities=32% Similarity=0.256 Sum_probs=34.5
Q ss_pred CHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021739 153 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~ 194 (308)
..+.++++|+.+++||++... .+++++..+.+. +|++++..
T Consensus 188 ~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 188 LAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 346899999988999999865 589999999986 99998854
No 390
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=93.40 E-value=2.6 Score=38.72 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=70.6
Q ss_pred CCHHHHHHHH-HcCCcEEEEecccccCCCCC--cchHHHHHHHHHHccCCCeEEEecCCCC-HHHHHHHHHcCCCEEEEc
Q 021739 174 LTAEDASLAI-QYGAAGIIVSNHGARQLDYV--PATVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGVFVG 249 (308)
Q Consensus 174 ~~~e~a~~~~-~~G~d~i~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~d~~k~l~~GAd~V~ig 249 (308)
.+++++.... +.|+|.+-++.+.-+..+.+ .-.++.|.++++.+ ++|++.=||=.. -+++.+++..|..=|-++
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 3678887666 57999999875322222222 23577889998877 789888775332 577888999999999999
Q ss_pred hHHHHhcc-------cCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 250 RPVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 250 ~~~l~~~~-------~~G------~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
+-+..+.. ... ..-.....+.+++.++..|+..|..
T Consensus 233 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 233 TELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred cHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 97754321 001 0113333455666666777777643
No 391
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.37 E-value=1.1 Score=38.55 Aligned_cols=80 Identities=29% Similarity=0.211 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCC-CEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCH
Q 021739 154 WKDVKWLQTITSL-PILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 232 (308)
Q Consensus 154 ~~~i~~ir~~~~~-Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (308)
.+.++.+++..+. -+....+.+.++++.+.++|+|++++ +|.+ ..+.++.+.. .++.+. | .+|+
T Consensus 51 ~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~-p~~~----------~~~~~~~~~~--~~~~i~-G-~~t~ 115 (187)
T PRK07455 51 AELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFT-PHVD----------PELIEAAVAQ--DIPIIP-G-ALTP 115 (187)
T ss_pred HHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEEC-CCCC----------HHHHHHHHHc--CCCEEc-C-cCCH
Confidence 3556666654432 12233446779999999999999964 2221 1122333333 455543 3 9999
Q ss_pred HHHHHHHHcCCCEEEE
Q 021739 233 TDVFKALALGASGVFV 248 (308)
Q Consensus 233 ~d~~k~l~~GAd~V~i 248 (308)
.++.++...|||.+.+
T Consensus 116 ~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 116 TEIVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999987
No 392
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=93.37 E-value=6.2 Score=36.75 Aligned_cols=209 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred ceeecCccc---CCceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCCce-----------E
Q 021739 2 TTTVLGFNI---SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRF-----------F 67 (308)
Q Consensus 2 ~t~~~g~~~---~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~~~~~~-----------~ 67 (308)
..++.|+++ ..|++||=++...-..-+--..+..+|++.|+.. +=-+.-.+.+.+........+ +
T Consensus 1 ~~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADa-vKfQt~~~~d~~t~~~~~~~~~i~~~~~~~sly 79 (347)
T COG2089 1 MIKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADA-VKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLY 79 (347)
T ss_pred CeeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcce-eeeecccccccccccccCCccccccccccccHH
Q ss_pred Eee--ecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCC-ccccccccccccccCCCCCCchhhhHh
Q 021739 68 QLY--VTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYV 144 (308)
Q Consensus 68 Ql~--~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~-~v~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (308)
|+| ..-+.++..++.+.+++.|.-.+ +.....+..+.-.++..|. |+
T Consensus 80 el~e~~~~p~e~~~~Lke~a~~~Gi~~~-----SSPfd~~svd~l~~~~~~ayKI------------------------- 129 (347)
T COG2089 80 ELYEEAETPLEWHAQLKEYARKRGIIFF-----SSPFDLTAVDLLESLNPPAYKI------------------------- 129 (347)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCeEEE-----ecCCCHHHHHHHHhcCCCeEEe-------------------------
Q ss_pred hhhcccccCHHHHHHHHHhcCCCEEEEecCC-----HHHHHHHHHcCCc-EEEEecccccCCCCCcchHHHHHHHHHHcc
Q 021739 145 ANQIDRSLNWKDVKWLQTITSLPILVKGVLT-----AEDASLAIQYGAA-GIIVSNHGARQLDYVPATVMALEEVVQAAK 218 (308)
Q Consensus 145 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~-----~e~a~~~~~~G~d-~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 218 (308)
...+.++-.+-+...+.+.|+++-..++ .+....+.+.|.- .+.++-...+........+..+..+++..
T Consensus 130 ---aS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F- 205 (347)
T COG2089 130 ---ASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF- 205 (347)
T ss_pred ---cCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEE
Q 021739 219 GRVPVFLDGGVRRGTDVFKALALGASGV 246 (308)
Q Consensus 219 ~~ipvia~GGI~~~~d~~k~l~~GAd~V 246 (308)
+++|=.|.==..-.-.+-|+++||+.+
T Consensus 206 -n~~vGlSDHT~g~~a~l~AvALGA~vi 232 (347)
T COG2089 206 -NAIVGLSDHTLGILAPLAAVALGASVI 232 (347)
T ss_pred -CCccccccCccchhHHHHHHHhcccce
No 393
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=93.37 E-value=6.4 Score=36.20 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=107.6
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHhc-------cCCC--CceEEeeecCCchH
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--SS---WATSSVEEVSS-------TGPG--IRFFQLYVTKHRNV 77 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~--s~---~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~~ 77 (308)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ ++ ..+.+.+|..+ ...+ +.+++.. .+.+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 47788888644445666667788888889976544 22 23456655332 1222 6677764 35677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHH
Q 021739 78 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 157 (308)
Q Consensus 78 ~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 157 (308)
..++++.+++.|++++.+.. |... + .. ++ -..+..
T Consensus 88 ai~~a~~a~~~Gadav~~~p--P~y~------------~---------------------~s-~~---------~i~~~f 122 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP--PYLI------------N---------------------GE-QE---------GLYAHV 122 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCCC------------C---------------------CC-HH---------HHHHHH
Confidence 77888889999999987642 3220 0 00 11 113566
Q ss_pred HHHHHhcCCCEEEEec----CCHHHHHHHHH-c-CCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 158 KWLQTITSLPILVKGV----LTAEDASLAIQ-Y-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~----~~~e~a~~~~~-~-G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
+.+.+.+++||++=.. ++++...++.+ . .+-+|.-+. .+...+.++.+..++++.|+...+. .
T Consensus 123 ~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds~----------~d~~~~~~~~~~~~~~~~v~~G~~~-~ 191 (296)
T TIGR03249 123 EAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDGI----------GDMEQMIEITQRLGDRLGYLGGMPT-A 191 (296)
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEEeCCCc-c
Confidence 7777778899876432 56788888875 2 344444221 1344455554444444444432111 1
Q ss_pred HHHHHHHHHcCCCEEEEchHH
Q 021739 232 GTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 232 ~~d~~k~l~~GAd~V~ig~~~ 252 (308)
...+...+.+||++++-|..-
T Consensus 192 d~~~~~~~~~Ga~G~is~~~n 212 (296)
T TIGR03249 192 EVTAPAYLPLGVTSYSSAIFN 212 (296)
T ss_pred hhhHHHHHhCCCCEEEecHHH
Confidence 334567788999999877643
No 394
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.32 E-value=1.1 Score=41.65 Aligned_cols=40 Identities=23% Similarity=0.645 Sum_probs=34.1
Q ss_pred CHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHH-HcCCcEEEE
Q 021739 153 NWKDVKWLQTITSLPILVKG-VLTAEDASLAI-QYGAAGIIV 192 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~-~~G~d~i~v 192 (308)
.|+.++++++.+++||+.-+ +.+++++..+. +.|+|++.+
T Consensus 180 ~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 180 NWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred hHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 47889999999999988754 47899998888 689999987
No 395
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.26 E-value=0.63 Score=40.66 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEE
Q 021739 154 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIV 192 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v 192 (308)
.+.++++|+.+++|+++.+. .+.++++.+.++|+|.|++
T Consensus 165 ~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 165 PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 57899999999999999965 6899999999999999986
No 396
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.26 E-value=0.92 Score=41.88 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=58.5
Q ss_pred HHHHhcCCCEEEEecC--CHH----HHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCH
Q 021739 159 WLQTITSLPILVKGVL--TAE----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 232 (308)
Q Consensus 159 ~ir~~~~~Pv~vK~~~--~~e----~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (308)
.+++..+.|+++-+.. +++ .++.+.+.|+|+|.+.... .+ .+....++.+.++++.+ ++||+.- ++.+.
T Consensus 109 ~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~-p~-~~~~~~~~~i~~l~~~~--~~pvivK-~v~s~ 183 (299)
T cd02809 109 EVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDT-PV-LGRRLTWDDLAWLRSQW--KGPLILK-GILTP 183 (299)
T ss_pred HHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCC-CC-CCCCCCHHHHHHHHHhc--CCCEEEe-ecCCH
Confidence 3333344688777652 333 4667788999999885421 00 01113467778887765 5898885 57999
Q ss_pred HHHHHHHHcCCCEEEEc
Q 021739 233 TDVFKALALGASGVFVG 249 (308)
Q Consensus 233 ~d~~k~l~~GAd~V~ig 249 (308)
+++.++..+|||++.+.
T Consensus 184 ~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 184 EDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999999884
No 397
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.25 E-value=1.6 Score=36.90 Aligned_cols=65 Identities=28% Similarity=0.266 Sum_probs=45.2
Q ss_pred HHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccC-CCeEEEecCCCC--------HHHHHHHHHcCCCEEEE
Q 021739 178 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG-RVPVFLDGGVRR--------GTDVFKALALGASGVFV 248 (308)
Q Consensus 178 ~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipvia~GGI~~--------~~d~~k~l~~GAd~V~i 248 (308)
.++.+.+.|+++|.+.+ ..+..+.+...+ ++|+++.=|-.+ .+.+.++..+|||++++
T Consensus 18 ~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 45777889999998743 445555566656 789876444333 34555677799999999
Q ss_pred chHHHHh
Q 021739 249 GRPVPFS 255 (308)
Q Consensus 249 g~~~l~~ 255 (308)
..|+.+.
T Consensus 85 ~~~~~~~ 91 (201)
T cd00945 85 VINIGSL 91 (201)
T ss_pred eccHHHH
Confidence 8887654
No 398
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.24 E-value=0.27 Score=46.37 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=63.9
Q ss_pred CceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhH
Q 021739 64 IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASY 143 (308)
Q Consensus 64 ~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (308)
|.++.+.+..+.+.+.++++.++++|+++|.++-..+.. . ++ ..+ .. . ...+.+
T Consensus 213 PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~--~--~~----~~~-~~---------------~--~~~gg~ 266 (344)
T PRK05286 213 PLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR--D--GL----KGL-PN---------------A--DEAGGL 266 (344)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc--c--cc----ccc-cc---------------C--CCCCCc
Confidence 678887755555567788888899999998876332210 0 00 000 00 0 000000
Q ss_pred hhhhcccccCHHHHHHHHHhc--CCCEE-EEecCCHHHHHHHHHcCCcEEEEe
Q 021739 144 VANQIDRSLNWKDVKWLQTIT--SLPIL-VKGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 144 ~~~~~d~~~~~~~i~~ir~~~--~~Pv~-vK~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
-.+ ......|+.++++++.+ ++||+ +.++.+.+++.....+|||+|.+.
T Consensus 267 SG~-~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 267 SGR-PLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred ccH-HHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 000 11223578899999888 78987 556689999999999999999763
No 399
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=93.20 E-value=3.1 Score=38.64 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=73.1
Q ss_pred CCHHHHHHHH-HcCCcEEEEecccccCCCC--C--cchHHHHHHHHHHccCCCeEEEecCCCCHH---------------
Q 021739 174 LTAEDASLAI-QYGAAGIIVSNHGARQLDY--V--PATVMALEEVVQAAKGRVPVFLDGGVRRGT--------------- 233 (308)
Q Consensus 174 ~~~e~a~~~~-~~G~d~i~v~~~gg~~~~~--~--~~~~~~l~~i~~~~~~~ipvia~GGI~~~~--------------- 233 (308)
.++++|.... +.|+|++-++...-+..+. + .-.++.|.++++.+ ++|++.=||=..++
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~ 232 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKG 232 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhcccccc
Confidence 3578877665 5799999987532222222 2 23678889998877 79999988766665
Q ss_pred -------HHHHHHHcCCCEEEEchHHHHhcc-------cCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 234 -------DVFKALALGASGVFVGRPVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 234 -------d~~k~l~~GAd~V~ig~~~l~~~~-------~~G------~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
++.+++.+|..=|-+++-+..+.. ... ..-+....+.+.+.++..|+.+|..
T Consensus 233 ~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 233 SKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred ccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 799999999999999997754321 000 1123334455666666777777653
No 400
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=93.18 E-value=0.28 Score=45.92 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=62.2
Q ss_pred CceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhH
Q 021739 64 IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASY 143 (308)
Q Consensus 64 ~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (308)
|.++.+-+..+.+.+.++++.++++|+++|.++-..+.. .. ...|. . . ...+.+
T Consensus 204 Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~--~~------~~~~~--------------~-~---~~~gG~ 257 (327)
T cd04738 204 PLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR--PG------LLRSP--------------L-A---NETGGL 257 (327)
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc--cc------ccccc--------------c-c---CCCCcc
Confidence 678777644444567778888888899988765322110 00 00000 0 0 000000
Q ss_pred hhhhcccccCHHHHHHHHHhc--CCCEE-EEecCCHHHHHHHHHcCCcEEEEe
Q 021739 144 VANQIDRSLNWKDVKWLQTIT--SLPIL-VKGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 144 ~~~~~d~~~~~~~i~~ir~~~--~~Pv~-vK~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
+........++.++.+++.+ ++||+ +.++.+.+++..+..+|||.|.+.
T Consensus 258 -sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 258 -SGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred -CChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 10011224578899999988 78987 445689999999999999999774
No 401
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=93.18 E-value=0.26 Score=44.65 Aligned_cols=40 Identities=33% Similarity=0.379 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEec
Q 021739 154 WKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
.+.++.+|+.+++||.++- +.++++++.+. .|+|+++|..
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 4679999999999999994 57899999999 8999999854
No 402
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=93.17 E-value=4.6 Score=33.96 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=37.2
Q ss_pred ccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021739 151 SLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
...++.++++++..++||++-+..+.+.+..+.++|+|++.++.
T Consensus 136 ~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 136 PLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEeh
Confidence 34578889998878899998887888999999999999998753
No 403
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=93.12 E-value=1.4 Score=41.11 Aligned_cols=41 Identities=15% Similarity=0.457 Sum_probs=34.7
Q ss_pred CHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHH-cCCcEEEEe
Q 021739 153 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQ-YGAAGIIVS 193 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~-~G~d~i~v~ 193 (308)
.|+.++++++.+++||+.-+ +.++++++.+.+ .|+|+|.++
T Consensus 182 ~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred ChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 58899999999999988765 468999998886 699999873
No 404
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=93.12 E-value=0.56 Score=41.20 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhcC----CCEEEEecCCHHHHHHHHHcCCcEEEEe
Q 021739 153 NWKDVKWLQTITS----LPILVKGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 153 ~~~~i~~ir~~~~----~Pv~vK~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
+.+.|+++|+..+ +-|-+=+..+.+.+..+.++|||.++..
T Consensus 153 ~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaG 197 (220)
T COG0036 153 VLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAG 197 (220)
T ss_pred HHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEE
Confidence 3566777776553 2244445688999999999999999753
No 405
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=93.04 E-value=2.3 Score=39.15 Aligned_cols=110 Identities=13% Similarity=0.161 Sum_probs=72.9
Q ss_pred CCHHHHHHHH-HcCCcEEEEecccccCCCCCc--chHHHHHHHHHHccCCCeEEEecCCCCH-HHHHHHHHcCCCEEEEc
Q 021739 174 LTAEDASLAI-QYGAAGIIVSNHGARQLDYVP--ATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGVFVG 249 (308)
Q Consensus 174 ~~~e~a~~~~-~~G~d~i~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvia~GGI~~~-~d~~k~l~~GAd~V~ig 249 (308)
.+++++.... +.|+|.+-++.+.-+..+.+. -.++.|.++.+.+ ++|++.=||=..+ +++.+++..|..=|-++
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence 4678887665 579999998763322222232 3577888888776 7999999987666 67778999999999999
Q ss_pred hHHHHhcc-------cCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 250 RPVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 250 ~~~l~~~~-------~~G------~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
+-+-.+.. ... ..-.....+.+.+.++..|+..|..
T Consensus 234 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 234 TENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred cHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 97644310 000 1123334455666667777777654
No 406
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=92.99 E-value=1.8 Score=41.39 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=35.5
Q ss_pred cccccCHHHHHHHHHhcCCCEEEEecC----CHHHHHHHHHcCCcEEEEec
Q 021739 148 IDRSLNWKDVKWLQTITSLPILVKGVL----TAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 148 ~d~~~~~~~i~~ir~~~~~Pv~vK~~~----~~e~a~~~~~~G~d~i~v~~ 194 (308)
..|....+.|+.+|+.+++||-+-.-- +.-...++.++|+|.|....
T Consensus 182 ltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAi 232 (472)
T COG5016 182 LTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTAI 232 (472)
T ss_pred CChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhhh
Confidence 356667899999999999999877532 23334678899999998643
No 407
>PRK07695 transcriptional regulator TenI; Provisional
Probab=92.94 E-value=3.2 Score=35.74 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021739 153 NWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
.++.++++++..++||++=+..+++.+..+.+.|+|+|.+..
T Consensus 137 g~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~Ga~gvav~s 178 (201)
T PRK07695 137 GLEELSDIARALSIPVIAIGGITPENTRDVLAAGVSGIAVMS 178 (201)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEEH
Confidence 578889998888999988877799999999999999998754
No 408
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=92.92 E-value=0.81 Score=42.83 Aligned_cols=42 Identities=26% Similarity=0.582 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHhcC-CCEEEEec-CCHHHHHHHHH-cCCcEEEEe
Q 021739 152 LNWKDVKWLQTITS-LPILVKGV-LTAEDASLAIQ-YGAAGIIVS 193 (308)
Q Consensus 152 ~~~~~i~~ir~~~~-~Pv~vK~~-~~~e~a~~~~~-~G~d~i~v~ 193 (308)
..|+.|+++++.++ +||+.-+- .++++++.+.+ .|+|++.+.
T Consensus 184 ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 184 ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 57999999999987 99998764 68999987776 679999873
No 409
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=92.91 E-value=6.4 Score=35.63 Aligned_cols=93 Identities=24% Similarity=0.398 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCEEEEec--CCHHH----HHHHHHcCCcEEEEecccccCCCCC---cchHHHHHHHHHHccCCCeEE
Q 021739 154 WKDVKWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDYV---PATVMALEEVVQAAKGRVPVF 224 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~--~~~e~----a~~~~~~G~d~i~v~~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipvi 224 (308)
++.++++-+ .++||++|-. .|.|+ |+.....|-..|++--+|-+..+.. .-+...+..+++.. .+|||
T Consensus 142 F~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVi 218 (286)
T COG2876 142 FALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVI 218 (286)
T ss_pred hHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEE
Confidence 345555533 5899999955 45555 6677778888887765553333221 12345566666554 68999
Q ss_pred EecCCCCH----HH--HHHHHHcCCCEEEEc
Q 021739 225 LDGGVRRG----TD--VFKALALGASGVFVG 249 (308)
Q Consensus 225 a~GGI~~~----~d--~~k~l~~GAd~V~ig 249 (308)
++=-=.++ .. +..+++.|||++|+-
T Consensus 219 vDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 219 VDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred ECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 97432222 22 224567899999875
No 410
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.90 E-value=3.3 Score=38.81 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=86.7
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccc
Q 021739 72 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 151 (308)
Q Consensus 72 ~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 151 (308)
.+|.+...++++.+.++|++++=+..- .+..+..... ++....+ . . ...+...-+.... ..
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~~------~~~~l~~~~~-~~~~~~~---~----~--~~~~~~~~~~~~~---~e 73 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQTY------TPDTITLDSD-RPEFIIK---G----G--LWDGRTLYDLYQE---AH 73 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeeec------cHHHhhcccc-ccccccc---c----C--CcCCccHHHHHHH---hh
Confidence 567889999999999999998765532 2222210000 0000000 0 0 0000011112211 23
Q ss_pred cCHHH---HHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 152 LNWKD---VKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 152 ~~~~~---i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
+.++. +.+.++..+++++. ..++.+.+..+.+.|++++.+.... ...+..|..+.+ ...|||.+-|
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KI~S~~-------~~n~~LL~~va~---~gkPvilstG 142 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFS-SPFDETAVDFLESLDVPAYKIASFE-------ITDLPLIRYVAK---TGKPIIMSTG 142 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-ccCCHHHHHHHHHcCCCEEEECCcc-------ccCHHHHHHHHh---cCCcEEEECC
Confidence 44444 55556667888763 4467888999999999999985421 234566666654 2689999999
Q ss_pred CCCHHHHHHHHH----cCCCEEEE
Q 021739 229 VRRGTDVFKALA----LGASGVFV 248 (308)
Q Consensus 229 I~~~~d~~k~l~----~GAd~V~i 248 (308)
..+.+++..+++ .|..-+.+
T Consensus 143 ~~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 143 IATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred CCCHHHHHHHHHHHHHCCCCcEEE
Confidence 999999988775 47744444
No 411
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=92.87 E-value=2 Score=36.19 Aligned_cols=78 Identities=26% Similarity=0.274 Sum_probs=59.4
Q ss_pred CceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhH
Q 021739 64 IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASY 143 (308)
Q Consensus 64 ~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (308)
...+|=.+--|...+++.++.++..++|++.+- | +
T Consensus 96 ~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL---P-----------------G------------------------- 130 (181)
T COG1954 96 ILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL---P-----------------G------------------------- 130 (181)
T ss_pred CceeeeeeeecHHHHHHHHHHHHHcCCCEEEEc---C-----------------c-------------------------
Confidence 344454446688888888888888888887753 1 1
Q ss_pred hhhhcccccCHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021739 144 VANQIDRSLNWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 144 ~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~ 194 (308)
++| +.++++.++++.||+..+- -+.|++..+.++||-++.-++
T Consensus 131 v~P--------kvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~ 174 (181)
T COG1954 131 VMP--------KVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSN 174 (181)
T ss_pred ccH--------HHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecc
Confidence 122 6789999999999999875 688999999999999997654
No 412
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=92.70 E-value=0.57 Score=45.37 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=63.5
Q ss_pred CCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhh
Q 021739 63 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 142 (308)
Q Consensus 63 ~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~ 142 (308)
-|.++.|. .+...+.++++.++++|++++.+. ++-. +...-|+++.-..| .+.. ....+.
T Consensus 169 ~Pv~vKl~--p~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p-~~~~---------------~~~~gg 228 (420)
T PRK08318 169 LPVIVKLT--PNITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMP-IVNG---------------KSSHGG 228 (420)
T ss_pred CcEEEEcC--CCcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCc-eecC---------------CCCccc
Confidence 37888875 344447778888899999997643 2111 10000110000001 0000 000011
Q ss_pred HhhhhcccccCHHHHHHHHHhc---CCCEE-EEecCCHHHHHHHHHcCCcEEEEec
Q 021739 143 YVANQIDRSLNWKDVKWLQTIT---SLPIL-VKGVLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 143 ~~~~~~d~~~~~~~i~~ir~~~---~~Pv~-vK~~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
++.....+..|+.|+++++.+ ++||+ +.++.+.+++...+.+|||+|.+..
T Consensus 229 -~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 229 -YCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred -ccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 111112334689999999876 78977 4557899999999999999998753
No 413
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=92.70 E-value=1.1 Score=39.93 Aligned_cols=40 Identities=30% Similarity=0.352 Sum_probs=32.5
Q ss_pred cCHHHHHHHHHhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021739 152 LNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 152 ~~~~~i~~ir~~~~~Pv~vK~-~~~~e~a~~~~~~G~d~i~v~ 193 (308)
..|+.|++++ .++||+.-+ +.+.+++..+.+.|+|+|.+.
T Consensus 180 ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 180 ADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 3578888887 689987644 478999999999999999874
No 414
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=92.67 E-value=1 Score=42.42 Aligned_cols=42 Identities=21% Similarity=0.210 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcC-CcEEEE
Q 021739 151 SLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG-AAGIIV 192 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G-~d~i~v 192 (308)
.+.++..+++|+.+++||++-+..+++.+..+++.| +|.|.+
T Consensus 271 ~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 271 DQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred ccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEe
Confidence 345678899999999999988877799999998876 999976
No 415
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=92.58 E-value=3.9 Score=36.07 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021739 152 LNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 152 ~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
..++.++++++..++||+.=+..+.+.+..+.++|+++|.+..
T Consensus 151 ~gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~GA~giAvis 193 (221)
T PRK06512 151 RNLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETGAEFVALER 193 (221)
T ss_pred CChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhCCCEEEEhH
Confidence 3467788888888999988777899999999999999998754
No 416
>PLN02334 ribulose-phosphate 3-epimerase
Probab=92.55 E-value=6.3 Score=34.76 Aligned_cols=90 Identities=11% Similarity=-0.028 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCEEEEecC-CH-HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 154 WKDVKWLQTITSLPILVKGVL-TA-EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~-~~-e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
.+.++++++.++.|+-+-... ++ +....+.++|+|+|+++..- .. .......+.++++. ..-+-.+-.-.|
T Consensus 54 ~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q-~~---~d~~~~~~~~i~~~---g~~iGls~~~~t 126 (229)
T PLN02334 54 PPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQ-AS---TIHLHRLIQQIKSA---GMKAGVVLNPGT 126 (229)
T ss_pred HHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeecc-cc---chhHHHHHHHHHHC---CCeEEEEECCCC
Confidence 378888888777776655543 34 44778899999999775420 00 01122334444321 333333332235
Q ss_pred HHHHHHHHHcC--CCEEEEch
Q 021739 232 GTDVFKALALG--ASGVFVGR 250 (308)
Q Consensus 232 ~~d~~k~l~~G--Ad~V~ig~ 250 (308)
+.+..+.+..+ +|.++++.
T Consensus 127 ~~~~~~~~~~~~~~Dyi~~~~ 147 (229)
T PLN02334 127 PVEAVEPVVEKGLVDMVLVMS 147 (229)
T ss_pred CHHHHHHHHhccCCCEEEEEE
Confidence 66666655444 99999985
No 417
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=92.54 E-value=1.7 Score=40.55 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=60.1
Q ss_pred CCceEEeeecCCc----hHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCc
Q 021739 63 GIRFFQLYVTKHR----NVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDS 138 (308)
Q Consensus 63 ~~~~~Ql~~~~d~----~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~ 138 (308)
-|..+.+..+.+. +.+.++++.+++.|++.|.|+..+... .+|+-+
T Consensus 124 ~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~--------qg~sg~---------------------- 173 (318)
T TIGR00742 124 IPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWL--------SGLSPK---------------------- 173 (318)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhh--------cCCCcc----------------------
Confidence 3677777654332 455577788888999998887433210 011100
Q ss_pred hhhhHhhhhcccccCHHHHHHHHHhc-CCCEEEE-ecCCHHHHHHHHHcCCcEEEEe
Q 021739 139 GLASYVANQIDRSLNWKDVKWLQTIT-SLPILVK-GVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 139 ~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK-~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
.... -+...|+.++++++.+ ++||+.- .+.+.+++....+ |+|+|.++
T Consensus 174 -~~~~-----~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 174 -ENRE-----IPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred -cccc-----CCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 0000 1234688999999887 8998754 3578999988886 99999873
No 418
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=92.49 E-value=2 Score=36.93 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCEE-EEecCCHHHHHHHHHcCCcEEEE
Q 021739 154 WKDVKWLQTITSLPIL-VKGVLTAEDASLAIQYGAAGIIV 192 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~-vK~~~~~e~a~~~~~~G~d~i~v 192 (308)
...++++|++++.+.+ +-+..+++.+.+++++||++|+.
T Consensus 157 m~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 157 MPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred HHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEe
Confidence 3578999988755544 66778899999999999999975
No 419
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=92.45 E-value=0.78 Score=42.14 Aligned_cols=46 Identities=22% Similarity=0.474 Sum_probs=39.2
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEec
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~~ 194 (308)
.|.+.++.+++|++.+++|+++-+. ...++.+++.+.|+.-|-+..
T Consensus 187 ~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 187 EPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred CCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 4667789999999999999998876 457889999999999997743
No 420
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=92.39 E-value=0.69 Score=42.44 Aligned_cols=45 Identities=18% Similarity=0.454 Sum_probs=38.9
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEe
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~ 193 (308)
.|.+.++.+++|++.+++|+++-+. .+.++.+++.+.|+.-|-+.
T Consensus 184 ~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 184 TPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred CCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4677889999999999999998886 45788999999999999764
No 421
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.28 E-value=7.2 Score=36.01 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=44.8
Q ss_pred HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeE---EEecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 179 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV---FLDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 179 a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv---ia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
++...++|||.|-+.+ +.+.+.+.++.+.+ +.|+ +..||-.-...+.+.-++|.+.|..+..++++
T Consensus 171 a~aY~eAGAD~ifi~~---------~~~~~ei~~~~~~~--~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 171 SREYVAAGADCIFLEA---------MLDVEEMKRVRDEI--DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHHHHHhCCCEEEecC---------CCCHHHHHHHHHhc--CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 5677899999998742 34567777777776 3454 44444322234556667899999999877765
No 422
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.21 E-value=8.2 Score=34.52 Aligned_cols=179 Identities=20% Similarity=0.124 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCceeecCCC------------CCCHHHHhcc-------CCCCceEEeee-cCCchHHHHHHHHHHHcC
Q 021739 30 ECATARAASAAGTIMTLSSWA------------TSSVEEVSST-------GPGIRFFQLYV-TKHRNVDAQLVKRAERAG 89 (308)
Q Consensus 30 ~~~~a~~a~~~g~~~~~s~~~------------~~~~e~i~~~-------~~~~~~~Ql~~-~~d~~~~~~~~~~~~~~g 89 (308)
|...++.+.+.|......+-+ ..+++++... ..-|...-+-. +.+.+...+.++++.+.|
T Consensus 18 D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G 97 (243)
T cd00377 18 DALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAG 97 (243)
T ss_pred CHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 557899999999887664321 1244443321 11133332221 236677778888888899
Q ss_pred CcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhc----C
Q 021739 90 FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT----S 165 (308)
Q Consensus 90 ~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~----~ 165 (308)
+.++.+.=... |++- + ..+...++ +++...+.|+.+++.. +
T Consensus 98 ~~gv~iED~~~---------------~k~~---------------g-~~~~~~~~----~~ee~~~ki~aa~~a~~~~~~ 142 (243)
T cd00377 98 AAGIHIEDQVG---------------PKKC---------------G-HHGGKVLV----PIEEFVAKIKAARDARDDLPD 142 (243)
T ss_pred CEEEEEecCCC---------------Cccc---------------c-CCCCCeec----CHHHHHHHHHHHHHHHhccCC
Confidence 99887641110 1100 0 00001111 1222234455555543 4
Q ss_pred CCEEEEe-----c-CCH----HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEec--CCCCHH
Q 021739 166 LPILVKG-----V-LTA----EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG--GVRRGT 233 (308)
Q Consensus 166 ~Pv~vK~-----~-~~~----e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G--GI~~~~ 233 (308)
++|+... . ... +-++...++|||.+.+.+ +.+.+.+.++.+.. ..|++..- +-. ..
T Consensus 143 ~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~---------~~~~~~~~~~~~~~--~~Pl~~~~~~~~~-~~ 210 (243)
T cd00377 143 FVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEG---------LKDPEEIRAFAEAP--DVPLNVNMTPGGN-LL 210 (243)
T ss_pred eEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCC---------CCCHHHHHHHHhcC--CCCEEEEecCCCC-CC
Confidence 6677662 1 223 346788999999998743 22557777777665 56766642 221 02
Q ss_pred HHHHHHHcCCCEEEEchHHHHh
Q 021739 234 DVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 234 d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
...+.-++|.+.|.+|...+++
T Consensus 211 ~~~~l~~lG~~~v~~~~~~~~~ 232 (243)
T cd00377 211 TVAELAELGVRRVSYGLALLRA 232 (243)
T ss_pred CHHHHHHCCCeEEEEChHHHHH
Confidence 3444457899999999877664
No 423
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=92.18 E-value=1.3 Score=40.97 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=63.7
Q ss_pred CCceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCC-ccccccccccccccCCCCCCchhh
Q 021739 63 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLA 141 (308)
Q Consensus 63 ~~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~-~v~~~~~~~~~~~~~~~~~~~~~~ 141 (308)
-|.++.+. .+...+.++++.+.++|+++|.+. ++- .+....++... .|. .+.. ....+
T Consensus 169 ~Pv~vKl~--~~~~~~~~~a~~~~~~Gadgi~~~-Nt~-~~~~~id~~~~--~~~~~~~~---------------~~~~g 227 (299)
T cd02940 169 IPVIAKLT--PNITDIREIARAAKEGGADGVSAI-NTV-NSLMGVDLDGT--PPAPGVEG---------------KTTYG 227 (299)
T ss_pred CCeEEECC--CCchhHHHHHHHHHHcCCCEEEEe-ccc-ccccccccccC--CccccccC---------------CCCcC
Confidence 37787775 355567788888899999997653 111 00000000000 000 0000 00111
Q ss_pred hHhhhhcccccCHHHHHHHHHhc--CCCEEEE-ecCCHHHHHHHHHcCCcEEEEe
Q 021739 142 SYVANQIDRSLNWKDVKWLQTIT--SLPILVK-GVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 142 ~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK-~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
.+ +...+.+.+|+.|+++++.+ ++||+.= ++.+.+++.+...+|||+|.+.
T Consensus 228 g~-sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 228 GY-SGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVC 281 (299)
T ss_pred cc-cCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEc
Confidence 11 11123345689999999998 8997754 4578999999999999999874
No 424
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=92.16 E-value=4.5 Score=37.22 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=74.2
Q ss_pred CCHHHHHHHH-HcCCcEEEEecccccCCCC-Cc--chHHHHHHHHHHccCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 021739 174 LTAEDASLAI-QYGAAGIIVSNHGARQLDY-VP--ATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGVFV 248 (308)
Q Consensus 174 ~~~e~a~~~~-~~G~d~i~v~~~gg~~~~~-~~--~~~~~l~~i~~~~~~~ipvia~GGI~~~-~d~~k~l~~GAd~V~i 248 (308)
.++++++... +.|+|.+-++.+.-+..+. .+ -.++.|.++.+.+ ++|++.=||=..+ +++.+++..|..=|-+
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 235 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKVNI 235 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEc
Confidence 3578887766 4799999987532222221 22 3678899998877 7999999987666 5788899999999999
Q ss_pred chHHHHhcc-------cCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 249 GRPVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 249 g~~~l~~~~-------~~G------~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
++-+..+.. ... ..-.....+.+.+.++..|+.+|..
T Consensus 236 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 236 DTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 997754320 000 1223344556667777777777754
No 425
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=91.99 E-value=0.7 Score=38.91 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCEEEEec----CCHHH-HHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCC
Q 021739 155 KDVKWLQTITSLPILVKGV----LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 229 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~----~~~e~-a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (308)
+.+...++ .+++.+-... ...+- ...+.+.++|+|.+-. | -....+.++.+.+ .+|||+.|=|
T Consensus 86 ~~i~~Akk-~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLP--------G-v~Pkvi~~i~~~t--~~piIAGGLi 153 (181)
T COG1954 86 NVIKKAKK-LGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVLP--------G-VMPKVIKEITEKT--HIPIIAGGLI 153 (181)
T ss_pred HHHHHHHH-cCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEcC--------c-ccHHHHHHHHHhc--CCCEEecccc
Confidence 34544444 3555554433 22233 4566679999998732 1 1345667776665 7999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHH
Q 021739 230 RRGTDVFKALALGASGVFVGRPVPF 254 (308)
Q Consensus 230 ~~~~d~~k~l~~GAd~V~ig~~~l~ 254 (308)
++-+|+..|+..||-+|.-..--+|
T Consensus 154 ~t~Eev~~Al~aGA~avSTs~~~lW 178 (181)
T COG1954 154 ETEEEVREALKAGAVAVSTSNTKLW 178 (181)
T ss_pred ccHHHHHHHHHhCcEEEeecchhhc
Confidence 9999999999999988875433333
No 426
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=91.98 E-value=2.4 Score=35.94 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=35.6
Q ss_pred cccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEe
Q 021739 150 RSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 150 ~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
+...|+.++++++..++||++=+..+++.+..+.++|++++.+.
T Consensus 134 ~~~g~~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 134 PPLGLDGLREIARASPIPVYALGGITPENIPELREAGADGVAVI 177 (180)
T ss_dssp TTCHHHHHHHHHHHTSSCEEEESS--TTTHHHHHHTT-SEEEES
T ss_pred cccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEE
Confidence 44567889999999999999888889999999999999999764
No 427
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=91.95 E-value=0.95 Score=41.59 Aligned_cols=45 Identities=13% Similarity=0.392 Sum_probs=38.8
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEe
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~ 193 (308)
.|.+.++.+++|++.+++|+++-+. ...++.+++.+.|+.-|-+.
T Consensus 186 ~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 186 TPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4667789999999999999998876 45788999999999999774
No 428
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.93 E-value=7.1 Score=35.89 Aligned_cols=189 Identities=17% Similarity=0.109 Sum_probs=101.3
Q ss_pred ceEeccccCcccCCCHHHHHHHHHHHHcCCceeecCC---C---------CCCHHHHhc-------cCCCCceEEeeec-
Q 021739 13 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW---A---------TSSVEEVSS-------TGPGIRFFQLYVT- 72 (308)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~s~~---~---------~~~~e~i~~-------~~~~~~~~Ql~~~- 72 (308)
..++.|=.+ |.--++.+.+.|.....++- + ..+++|+.. ...-|+++=+--+
T Consensus 13 ~~l~~p~~~--------Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~Gy 84 (285)
T TIGR02317 13 DILQIPGAI--------NAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGF 84 (285)
T ss_pred CcEEeCCCC--------CHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCC
Confidence 456677433 44668888888877554432 1 123444332 1222444433322
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhccccc
Q 021739 73 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 152 (308)
Q Consensus 73 ~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 152 (308)
+++..+.+.+++..++|+-+|.|. |. + .|++ ++...+ +.++ +.+.
T Consensus 85 G~~~~v~~tv~~~~~aG~agi~IE-Dq-~-------------~pK~---------------cgh~~g-~~lv----~~ee 129 (285)
T TIGR02317 85 GEAFNVARTVREMEDAGAAAVHIE-DQ-V-------------LPKR---------------CGHLPG-KELV----SREE 129 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEe-cC-C-------------Cccc---------------cCCCCC-cccc----CHHH
Confidence 457777788888888998887664 11 0 0111 000000 0111 1111
Q ss_pred CHHHHHHHHHhc-CCCEEEEecC------CHH----HHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCC
Q 021739 153 NWKDVKWLQTIT-SLPILVKGVL------TAE----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRV 221 (308)
Q Consensus 153 ~~~~i~~ir~~~-~~Pv~vK~~~------~~e----~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 221 (308)
..+.|+..++.. +.++++=-+. ..+ -++...++|||.|-+.+ +.+.+.+.++.+.+ ..
T Consensus 130 ~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g---------~~~~e~i~~~~~~i--~~ 198 (285)
T TIGR02317 130 MVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEA---------LTSLEEFRQFAKAV--KV 198 (285)
T ss_pred HHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCC---------CCCHHHHHHHHHhc--CC
Confidence 234456555543 3445443221 123 35677899999998742 23566677777766 46
Q ss_pred eEE---EecCCCCHHHHHHHHHcCCCEEEEchHHHHh
Q 021739 222 PVF---LDGGVRRGTDVFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 222 pvi---a~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~ 255 (308)
|++ ..+|-.-..++.+.-++|.+.|..|..++++
T Consensus 199 Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 199 PLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred CEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 763 3344211124555567999999999877764
No 429
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.84 E-value=1.2 Score=41.19 Aligned_cols=83 Identities=23% Similarity=0.334 Sum_probs=56.6
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc--C---CCCCcchHHH----HHHHHHHccCCCeEEEec--CCCCHH
Q 021739 165 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR--Q---LDYVPATVMA----LEEVVQAAKGRVPVFLDG--GVRRGT 233 (308)
Q Consensus 165 ~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~--~---~~~~~~~~~~----l~~i~~~~~~~ipvia~G--GI~~~~ 233 (308)
+.|+++-++.+.-.|+.+.++|.+++.+++.+-. . .|.+.-+++. +.++.+.+ ++||++++ |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 4588877778888999999999999998875311 0 1223323333 23333333 79999987 677888
Q ss_pred HH----HHHHHcCCCEEEEc
Q 021739 234 DV----FKALALGASGVFVG 249 (308)
Q Consensus 234 d~----~k~l~~GAd~V~ig 249 (308)
++ .+...+||.++.|-
T Consensus 94 ~v~r~V~~~~~aGaagi~IE 113 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHIE 113 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEe
Confidence 86 34455899998883
No 430
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=91.82 E-value=2 Score=38.55 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=46.2
Q ss_pred ccCHHHHHHHH---HhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEec
Q 021739 151 SLNWKDVKWLQ---TITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 227 (308)
Q Consensus 151 ~~~~~~i~~ir---~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (308)
.++++..+++. +..++.++. ...+.+.+..+.+.|++++.|.... ...+..|..+++ .+.|||.|-
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~s-tpfd~~s~d~l~~~~~~~~KIaS~d-------l~n~~lL~~~A~---tgkPvIlST 120 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFS-TPFDEESVDFLEELGVPAYKIASGD-------LTNLPLLEYIAK---TGKPVILST 120 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEE-EE-SHHHHHHHHHHT-SEEEE-GGG-------TT-HHHHHHHHT---T-S-EEEE-
T ss_pred cCCHHHHHHHHHHHHHcCCEEEE-CCCCHHHHHHHHHcCCCEEEecccc-------ccCHHHHHHHHH---hCCcEEEEC
Confidence 34444444444 444655543 3467889999999999999985431 234556666543 379999999
Q ss_pred CCCCHHHHHHHHH
Q 021739 228 GVRRGTDVFKALA 240 (308)
Q Consensus 228 GI~~~~d~~k~l~ 240 (308)
|..+-+++.+++.
T Consensus 121 G~stl~EI~~Av~ 133 (241)
T PF03102_consen 121 GMSTLEEIERAVE 133 (241)
T ss_dssp TT--HHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999999988776
No 431
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.79 E-value=11 Score=34.92 Aligned_cols=182 Identities=20% Similarity=0.242 Sum_probs=110.5
Q ss_pred CCceEeccccCcccCCCHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHhc-------cCCC--CceEEeeecCCch
Q 021739 11 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--SS---WATSSVEEVSS-------TGPG--IRFFQLYVTKHRN 76 (308)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~--s~---~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~ 76 (308)
-.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++ ..+.+.+|..+ ...+ |.+.+.. ..+-+
T Consensus 8 vi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~ 86 (299)
T COG0329 8 VIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTA 86 (299)
T ss_pred ceeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHH
Confidence 357888999753335666667788888888876444 22 24556665332 1222 5666665 45577
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHH
Q 021739 77 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 156 (308)
Q Consensus 77 ~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 156 (308)
...++.+.+++.|++++.+- .|... + .. ++ -..+.
T Consensus 87 eai~lak~a~~~Gad~il~v--~PyY~--------------k-------------------~~-~~---------gl~~h 121 (299)
T COG0329 87 EAIELAKHAEKLGADGILVV--PPYYN--------------K-------------------PS-QE---------GLYAH 121 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEe--CCCCc--------------C-------------------CC-hH---------HHHHH
Confidence 77888899999999998764 24320 0 00 11 12356
Q ss_pred HHHHHHhcCCCEEEEec-------CCHHHHHHHHHc-CCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 157 VKWLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 157 i~~ir~~~~~Pv~vK~~-------~~~e~a~~~~~~-G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
.+++.+.+++|+++=.+ .+++...++.+. .+-+|. ..+ .+...+.++......+--++.+|
T Consensus 122 f~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiK--d~~--------gd~~~~~~~~~~~~~~~f~v~~G- 190 (299)
T COG0329 122 FKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVK--DSS--------GDLDRLEEIIAALGDRDFIVLSG- 190 (299)
T ss_pred HHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEE--eCC--------cCHHHHHHHHHhcCccCeeEEeC-
Confidence 78888888999887654 567888888872 222222 111 14555555554443211244444
Q ss_pred CCCHHHHHHHHHcCCCEEEEchH
Q 021739 229 VRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
.-+.....+.+|++++.-+..
T Consensus 191 --~d~~~~~~~~~G~~G~is~~~ 211 (299)
T COG0329 191 --DDELALPALLLGADGVISVTA 211 (299)
T ss_pred --chHHHHHHHhCCCCeEEeccc
Confidence 245567777799999988773
No 432
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.73 E-value=2.6 Score=39.41 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=60.7
Q ss_pred ccccCHHHHHHHHHhcC-CCEEEEec------CCHHHHHHHH-HcCCcEEEEeccccc--CCCCCcchH----HHHHHHH
Q 021739 149 DRSLNWKDVKWLQTITS-LPILVKGV------LTAEDASLAI-QYGAAGIIVSNHGAR--QLDYVPATV----MALEEVV 214 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~-~Pv~vK~~------~~~e~a~~~~-~~G~d~i~v~~~gg~--~~~~~~~~~----~~l~~i~ 214 (308)
+++ .++.++.+|+..+ .|+++-.. .+++.+..+. ..++|++.+...... ....+...+ +.|..+.
T Consensus 96 ~~e-~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~ 174 (326)
T cd02811 96 DPE-LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELV 174 (326)
T ss_pred Chh-hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHH
Confidence 444 3466777887764 88776543 1566655444 478999988542110 011122233 4455555
Q ss_pred HHccCCCeEEEe--cCCCCHHHHHHHHHcCCCEEEEch
Q 021739 215 QAAKGRVPVFLD--GGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 215 ~~~~~~ipvia~--GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
+.+ ++||++= |--.+.+++..+...|+|++.++.
T Consensus 175 ~~~--~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 175 KAL--SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred Hhc--CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 555 7899883 433677888877789999999864
No 433
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=91.69 E-value=2.2 Score=40.95 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021739 206 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 206 ~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig 249 (308)
+|+.|.++++.. ++||+.- ||.+.+|+.++++.|+|++.+.
T Consensus 241 tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 241 TWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 567777777665 6898885 7899999999999999999986
No 434
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.67 E-value=2.4 Score=39.78 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=33.0
Q ss_pred CHHHHHHHHHhcCCCEEEEecC-CHHHHHHHHHcC-CcEEEE
Q 021739 153 NWKDVKWLQTITSLPILVKGVL-TAEDASLAIQYG-AAGIIV 192 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~~-~~e~a~~~~~~G-~d~i~v 192 (308)
.++..+++|+.+++||++-+.. +++++..+++.| +|.|.+
T Consensus 280 ~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 280 FLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 3577889999999999887764 789999888876 898865
No 435
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=91.66 E-value=4.2 Score=38.32 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=60.6
Q ss_pred CceEEeeec---CCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchh
Q 021739 64 IRFFQLYVT---KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGL 140 (308)
Q Consensus 64 ~~~~Ql~~~---~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~ 140 (308)
|..+|-... .|.+.+.+.++++.++|++.+-+++ |-.
T Consensus 27 Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav--~~~-------------------------------------- 66 (360)
T PRK00366 27 PIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAV--PDM-------------------------------------- 66 (360)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcc--CCH--------------------------------------
Confidence 667776533 3567777788888999999987764 210
Q ss_pred hhHhhhhcccccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEE
Q 021739 141 ASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIV 192 (308)
Q Consensus 141 ~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v 192 (308)
. ..+.+++|++..++|++.=+-+++..|..+.++|+|.|.+
T Consensus 67 ~-----------~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRI 107 (360)
T PRK00366 67 E-----------AAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRI 107 (360)
T ss_pred H-----------HHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEE
Confidence 0 1246788999999999987779999999999999999987
No 436
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.66 E-value=1.1 Score=41.28 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=38.7
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEe
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~ 193 (308)
.|.+.++.+++|++.+++|+++-+. .+.++.+++.+.|+.-|-+.
T Consensus 186 ~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~ 232 (284)
T PRK12737 186 EPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVA 232 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeC
Confidence 4667789999999999999998876 45788999999999999764
No 437
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=91.64 E-value=2.4 Score=40.04 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=58.1
Q ss_pred CCCEEEEec------CCHHHHHHHHHcCCcEEEEeccc---cc---------CC-------------------------C
Q 021739 165 SLPILVKGV------LTAEDASLAIQYGAAGIIVSNHG---AR---------QL-------------------------D 201 (308)
Q Consensus 165 ~~Pv~vK~~------~~~e~a~~~~~~G~d~i~v~~~g---g~---------~~-------------------------~ 201 (308)
+.|+++=.. .+.+..+++.++|+++|.++... |. +. .
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 357765433 23456789999999999987421 10 00 0
Q ss_pred CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 202 YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 202 ~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
....+|+.+.++++.. ++||+.- ||.+.+|+.++...|+|++.+..
T Consensus 197 ~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 197 DPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 0124577788777665 7899987 78899999999999999998764
No 438
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=91.62 E-value=3.3 Score=39.58 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=61.4
Q ss_pred ccCHHHHHHHHHhcC-CCEEEEec---------CCH----HHHHHHHHcCCcEEEEecccccC-------CCCCcchH--
Q 021739 151 SLNWKDVKWLQTITS-LPILVKGV---------LTA----EDASLAIQYGAAGIIVSNHGARQ-------LDYVPATV-- 207 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~-~Pv~vK~~---------~~~----e~a~~~~~~G~d~i~v~~~gg~~-------~~~~~~~~-- 207 (308)
.+.+|.+..|++..+ --+.+.++ .+. ..+....+-|.|++.+++..... ..+-+..+
T Consensus 225 Rf~lEv~daVr~~Ip~s~~~l~~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~ 304 (400)
T KOG0134|consen 225 RFPLEVVDAVRKEIPASRVFLRGSPTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAF 304 (400)
T ss_pred hhhHHHHHHHHHhhccccceEEecCchhhhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccc
Confidence 457889999998762 11222222 122 33566778899977775432110 00001111
Q ss_pred --HHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHh
Q 021739 208 --MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 255 (308)
Q Consensus 208 --~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~ig~~~l~~ 255 (308)
+....++... ...-|-+.||.++++.+.+++..| .|+|..||+|+..
T Consensus 305 ~~~f~e~~r~~~-kgt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~an 354 (400)
T KOG0134|consen 305 FVEFAETIRPVF-KGTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLAN 354 (400)
T ss_pred hhhhhhHHHHHh-cCcEEEecCCccCHHHHHHHHhcCCceeEEecchhccC
Confidence 1112233333 234566677899999999999998 5599999999864
No 439
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.51 E-value=11 Score=34.69 Aligned_cols=180 Identities=14% Similarity=0.040 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCceee-cCC--C----------CCCHHHHhc-------cCCCCceEEeeec-CCchHHHHHHHHHHHc
Q 021739 30 ECATARAASAAGTIMTL-SSW--A----------TSSVEEVSS-------TGPGIRFFQLYVT-KHRNVDAQLVKRAERA 88 (308)
Q Consensus 30 ~~~~a~~a~~~g~~~~~-s~~--~----------~~~~e~i~~-------~~~~~~~~Ql~~~-~d~~~~~~~~~~~~~~ 88 (308)
|.--++.+.+.|...+. |+. + ..+++|+.. ..+-|+++=+--+ +++..+.+.+++..++
T Consensus 26 Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~a 105 (292)
T PRK11320 26 NAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKA 105 (292)
T ss_pred CHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 44668889998877653 332 1 113333332 1212444433222 3777888888989999
Q ss_pred CCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhc-CCC
Q 021739 89 GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT-SLP 167 (308)
Q Consensus 89 g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~-~~P 167 (308)
|+-+|.|- |.- .|++ ++... .+..+ +++...+.|+..++.- +.+
T Consensus 106 Gaagi~IE-Dq~--------------~pK~---------------cg~~~-~~~lv----~~ee~~~kI~Aa~~a~~~~d 150 (292)
T PRK11320 106 GAAAVHIE-DQV--------------GAKR---------------CGHRP-NKEIV----SQEEMVDRIKAAVDARTDPD 150 (292)
T ss_pred CCeEEEEe-cCC--------------Cccc---------------cCCCC-CCccc----CHHHHHHHHHHHHHhccCCC
Confidence 98887663 211 1111 00000 00111 1111234455555542 444
Q ss_pred EEEEec------CCHH----HHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEE---EecCCCCHHH
Q 021739 168 ILVKGV------LTAE----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF---LDGGVRRGTD 234 (308)
Q Consensus 168 v~vK~~------~~~e----~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---a~GGI~~~~d 234 (308)
+++=-+ ...+ -++...++|||.|-+.+ +.+.+.+.++.+.+ +.|++ ..+|-.-..+
T Consensus 151 ~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~---------~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s 219 (292)
T PRK11320 151 FVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEA---------MTELEMYRRFADAV--KVPILANITEFGATPLFT 219 (292)
T ss_pred eEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCC
Confidence 544322 1123 35777899999998742 33567777777766 56773 3344221123
Q ss_pred HHHHHHcCCCEEEEchHHHHh
Q 021739 235 VFKALALGASGVFVGRPVPFS 255 (308)
Q Consensus 235 ~~k~l~~GAd~V~ig~~~l~~ 255 (308)
+.+.-++|.+.|..|...+++
T Consensus 220 ~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 220 TEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHHHHHcCCcEEEEChHHHHH
Confidence 445557899999999877654
No 440
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.45 E-value=1.1 Score=41.21 Aligned_cols=45 Identities=18% Similarity=0.470 Sum_probs=38.7
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEe
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~ 193 (308)
.|.+.++.+++|++.+++|+++-+. ...++.+++.+.|+.-|-+.
T Consensus 186 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 186 EPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4667789999999999999998876 45788999999999999774
No 441
>PRK08005 epimerase; Validated
Probab=91.43 E-value=1.8 Score=38.01 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=30.8
Q ss_pred HHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEe
Q 021739 154 WKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 154 ~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
++.|+++|+.. ...|.+=+..+.+.+..+.++|||.++++
T Consensus 151 ~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 151 CEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIG 191 (210)
T ss_pred HHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 45677776654 23577777789999999999999998763
No 442
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=91.39 E-value=1.2 Score=41.04 Aligned_cols=46 Identities=28% Similarity=0.510 Sum_probs=39.2
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEec
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~~ 194 (308)
.|.+.++.+++|++.+++|+++-+. ...++.+++.+.|+.-|-+..
T Consensus 187 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T 234 (286)
T PRK08610 187 EPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNT 234 (286)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEecc
Confidence 4677789999999999999998876 456889999999999997743
No 443
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=91.39 E-value=2.7 Score=38.06 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 176 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 176 ~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
.+.|+...++||++|.+-.... ......+.+..+++.+ ++||+.--=|.++.++..+..+|||+|.+.-..+
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~----~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER----FFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAAL 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc----cCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC
Confidence 4568888999999998743211 1112367777777766 7999987778889999999999999998876553
No 444
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=91.28 E-value=6.3 Score=37.09 Aligned_cols=127 Identities=21% Similarity=0.318 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEecccccCCCC-C--cchHHHHHHHHHHccCCCeEE
Q 021739 154 WKDVKWLQTITSLPILVKGVL--TAED----ASLAIQYGAAGIIVSNHGARQLDY-V--PATVMALEEVVQAAKGRVPVF 224 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~~--~~e~----a~~~~~~G~d~i~v~~~gg~~~~~-~--~~~~~~l~~i~~~~~~~ipvi 224 (308)
...++++-+ +++||++|... +.++ ++.+...|-+-+.+--+|.+.... . ..++..+..+++.. .+|||
T Consensus 190 ~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 445666553 68999999763 5655 456667788777765444333211 1 12345556555443 58999
Q ss_pred EecCCCCH------HHHHHHHHcCCCEEEEchHHH-HhcccCCHHHH-HHHHHHHHHHHHHHHHHcC
Q 021739 225 LDGGVRRG------TDVFKALALGASGVFVGRPVP-FSLAVDGEAGV-RKVLQMLRDEFELTMALSG 283 (308)
Q Consensus 225 a~GGI~~~------~d~~k~l~~GAd~V~ig~~~l-~~~~~~G~~~v-~~~i~~l~~~l~~~m~~~G 283 (308)
++-+-.++ .-...|+++|||++++-.=+- ....++|+..+ -+-+..+.++++..-...|
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 87654444 345567789999999886221 11113443221 1334566666666555554
No 445
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.27 E-value=1.3 Score=40.79 Aligned_cols=109 Identities=17% Similarity=0.053 Sum_probs=61.7
Q ss_pred CCceEEeeecCCchHHHHHHHHHHHc--CCcEEEEecCCCCCCcchHHh-hhccCCCCccccccccccccccCCCCCCch
Q 021739 63 GIRFFQLYVTKHRNVDAQLVKRAERA--GFKAIALTVDTPRLGRREADI-KNRFVLPPHLTLKNYEGLYIGKMDKTDDSG 139 (308)
Q Consensus 63 ~~~~~Ql~~~~d~~~~~~~~~~~~~~--g~~~i~i~~~~p~~~~r~~~~-~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~ 139 (308)
-|.++.|-+..|.+.+.++++.+.+. |++++.+. ++-..+... +. +. .| .+.. ....+.-
T Consensus 158 iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~i-d~~~~---~~-~~~~-----------~~~~gG~ 220 (294)
T cd04741 158 IPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLVL-DPERE---TV-VLKP-----------KTGFGGL 220 (294)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCccccc-cCCCC---Cc-ccCC-----------CCCCCCc
Confidence 37888887666766777888888777 88877542 211100000 00 00 00 0000 0000010
Q ss_pred hhhHhhhhcccccCHHHHHHHHHhc--CCCEEEE-ecCCHHHHHHHHHcCCcEEEEe
Q 021739 140 LASYVANQIDRSLNWKDVKWLQTIT--SLPILVK-GVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 140 ~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK-~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
++..+ ....++.++++++.. ++||+.= ++.+.+++.....+|||++.+.
T Consensus 221 SG~~i-----~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ 272 (294)
T cd04741 221 AGAYL-----HPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVG 272 (294)
T ss_pred Cchhh-----HHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEc
Confidence 11111 122466788888887 4897654 4689999999999999999874
No 446
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=91.24 E-value=1.2 Score=40.89 Aligned_cols=45 Identities=18% Similarity=0.440 Sum_probs=38.9
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEe
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~ 193 (308)
.|.+.++.+++|++.+++|+++-+. .+.++.+++.+.|+.-|.+.
T Consensus 186 ~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK12857 186 EPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNID 232 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4677889999999999999998876 46788999999999999764
No 447
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=91.10 E-value=4.6 Score=39.67 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcC--CC-EEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCC
Q 021739 154 WKDVKWLQTITS--LP-ILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 230 (308)
Q Consensus 154 ~~~i~~ir~~~~--~P-v~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (308)
.+.-.++.+..+ .. |.--++.++++++.+.+ |+|++.+...- -..+.....+.++.. ..+.| .|++
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~l----m~~~d~~~~~~~L~~---~~vKI---CGit 265 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSL----MAEDDLELAVRKLIL---GENKV---CGLT 265 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHH----cCCCCHHHHHHHHhc---ccccc---CCCC
Confidence 344455555442 22 22234578999999866 79999774321 111222333433321 12323 5899
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 021739 231 RGTDVFKALALGASGVFV 248 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~i 248 (308)
+.+|+..+..+|||++++
T Consensus 266 ~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 266 RPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CHHHHHHHHhCCCCEEee
Confidence 999999999999999987
No 448
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=91.06 E-value=1.7 Score=39.87 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=95.9
Q ss_pred cCCceEeccccCcccCCCHHH---HHHHHHHHHcCCceeecCCCCCCHHHHhccC-CCCceEEeeecC------CchHHH
Q 021739 10 ISMPIMIAPTAFQKMAHPEGE---CATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTK------HRNVDA 79 (308)
Q Consensus 10 ~~~Pi~iapm~~~~~~~~~~~---~~~a~~a~~~g~~~~~s~~~~~~~e~i~~~~-~~~~~~Ql~~~~------d~~~~~ 79 (308)
...|++|.-..+. +.+...+ ..+...|++..+|.++--==..+++.+..+- .+..++|+- .+ +.+.+.
T Consensus 41 ~~~Pvii~~~~~~-~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d-~s~~~~~eni~~t~ 118 (281)
T PRK06806 41 LNSPIILQIAEVR-LNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFD-GSHLPLEENIQKTK 118 (281)
T ss_pred hCCCEEEEcCcch-hccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEc-CCCCCHHHHHHHHH
Confidence 4678777543222 1111122 2355677788888877532223555554432 256788876 33 246788
Q ss_pred HHHHHHHHcCCcE--EEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHH
Q 021739 80 QLVKRAERAGFKA--IALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 157 (308)
Q Consensus 80 ~~~~~~~~~g~~~--i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 157 (308)
++.+.+++.|+.. -..+++---.+ ...+...+..|..+. ...+....+.+--..|+.++.+ + ..|...++.+
T Consensus 119 ~v~~~a~~~gv~veaE~ghlG~~d~~--~~~~g~s~t~~eea~-~f~~~tg~DyLAvaiG~~hg~~--~-~~~~l~~~~L 192 (281)
T PRK06806 119 EIVELAKQYGATVEAEIGRVGGSEDG--SEDIEMLLTSTTEAK-RFAEETDVDALAVAIGNAHGMY--N-GDPNLRFDRL 192 (281)
T ss_pred HHHHHHHHcCCeEEEEeeeECCccCC--cccccceeCCHHHHH-HHHHhhCCCEEEEccCCCCCCC--C-CCCccCHHHH
Confidence 9999999988642 22344310000 000001111111000 0000001111111112332322 1 3466789999
Q ss_pred HHHHHhcCCCEEEEe--cCCHHHHHHHHHcCCcEEEEec
Q 021739 158 KWLQTITSLPILVKG--VLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~--~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
+++++.+++|+++=+ ..+.+.+..+.+.|++.|.+..
T Consensus 193 ~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T 231 (281)
T PRK06806 193 QEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVAT 231 (281)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhH
Confidence 999999999998888 5789999999999999998753
No 449
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=91.04 E-value=5.5 Score=36.67 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=72.5
Q ss_pred CHHHHHHH-HHcCCcEEEEecccccCCCCC--cc--hHHHHHHHHHHccCCCeEEEecCCCCHH-HHHHHHHcCCCEEEE
Q 021739 175 TAEDASLA-IQYGAAGIIVSNHGARQLDYV--PA--TVMALEEVVQAAKGRVPVFLDGGVRRGT-DVFKALALGASGVFV 248 (308)
Q Consensus 175 ~~e~a~~~-~~~G~d~i~v~~~gg~~~~~~--~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-d~~k~l~~GAd~V~i 248 (308)
+|+++... .+.|+|.+-++.+.-+..+.+ .| .++.|.++.+.+. ++|++.=||=..++ ++.+++.+|..=|-+
T Consensus 156 dP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 234 (287)
T PF01116_consen 156 DPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKINI 234 (287)
T ss_dssp SHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEEE
Confidence 57777655 589999999875332222223 33 5778888887753 68999988765554 888999999999999
Q ss_pred chHHHHhcc--------cC-C---H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 249 GRPVPFSLA--------VD-G---E-AGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 249 g~~~l~~~~--------~~-G---~-~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
++-+..+.. .. + + +-.....+.+.+.++..|+.+|..
T Consensus 235 ~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 235 GTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 997765421 00 1 1 223444556777777788887764
No 450
>PRK06801 hypothetical protein; Provisional
Probab=91.03 E-value=1.7 Score=40.05 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=39.4
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEec
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~~ 194 (308)
.|...++.++++++.+++|+++-+. .+.++++++.++|++.|.+..
T Consensus 187 ~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T 234 (286)
T PRK06801 187 EPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYT 234 (286)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehh
Confidence 3556788999999999999988877 678999999999999998753
No 451
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=91.00 E-value=1.9 Score=38.96 Aligned_cols=71 Identities=24% Similarity=0.261 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 021739 177 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 253 (308)
Q Consensus 177 e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l 253 (308)
+.++...++||++|.|-.-. .+...+++.|..+++.+ ++|+..-==|-++.++.++..+|||+|.+=-.++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~----~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEP----KFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--S----CCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHhcCCCEEEEECCC----CCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 56888899999999874321 11223577788887776 7999998889999999999999999998765555
No 452
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=90.99 E-value=13 Score=34.35 Aligned_cols=182 Identities=17% Similarity=0.107 Sum_probs=105.9
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHhc-------cCCC--CceEEeeecCCchH
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVSS-------TGPG--IRFFQLYVTKHRNV 77 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~g~~~~~--s---~~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~~ 77 (308)
.|.++.|+.-.+-.+.++-..+.+...+.|+...+ + |+...+.||... ...+ +.+.... . +.+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 57888898655445666667788888888876543 2 234556665332 2222 5666764 3 6677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHH
Q 021739 78 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 157 (308)
Q Consensus 78 ~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 157 (308)
+.++++.+++.|++++.+.- |... + . +.+-..+..
T Consensus 90 ~i~~~~~a~~~Gadav~~~p--P~y~--------------~-------------------~----------~~~~i~~~f 124 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLP--PYLT--------------E-------------------A----------PQEGLAAHV 124 (303)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCCC--------------C-------------------C----------CHHHHHHHH
Confidence 77888999999999987642 3210 0 0 011123567
Q ss_pred HHHHHhcCCCEEEEec----CCHHHHHHHH-Hc-CCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 158 KWLQTITSLPILVKGV----LTAEDASLAI-QY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~----~~~e~a~~~~-~~-G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
+.+.+.+++||++=.. ++++...++. +. .+-+|.-+. .+...+.++.+...+++.|+. | ..+
T Consensus 125 ~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK~s~----------~d~~~~~~~~~~~~~~f~vl~-G-~d~ 192 (303)
T PRK03620 125 EAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGFKDGV----------GDIELMQRIVRALGDRLLYLG-G-LPT 192 (303)
T ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEEe-C-CCc
Confidence 7787888899876432 5677777777 43 233333221 123444455444444454443 3 221
Q ss_pred -HHHHHHHHHcCCCEEEEchHH
Q 021739 232 -GTDVFKALALGASGVFVGRPV 252 (308)
Q Consensus 232 -~~d~~k~l~~GAd~V~ig~~~ 252 (308)
-..+..++.+||++...+.+-
T Consensus 193 ~e~~~~~~~~~G~~G~is~~an 214 (303)
T PRK03620 193 AEVFAAAYLALGVPTYSSAVFN 214 (303)
T ss_pred chhhHHHHHhCCCCEEEecHHh
Confidence 223445678899998776643
No 453
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=90.98 E-value=9.1 Score=32.88 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021739 153 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 153 ~~~~i~~ir~~~~-~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
.++.++++++..+ +||++=+..+.+.+..+.++|+|++.+..
T Consensus 147 g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 147 GLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeH
Confidence 4788999988876 99998887899999999999999998753
No 454
>PLN02826 dihydroorotate dehydrogenase
Probab=90.91 E-value=1.8 Score=41.90 Aligned_cols=104 Identities=16% Similarity=0.193 Sum_probs=62.7
Q ss_pred CceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhH
Q 021739 64 IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASY 143 (308)
Q Consensus 64 ~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (308)
|.++.+-+..+.+.+.++++.+.+.|+++|.++ ++-. + |..++.. .+.. ... |. +
T Consensus 264 Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~-NTt~-~-r~~dl~~---~~~~--------------~~~-GG----l 318 (409)
T PLN02826 264 PLLVKIAPDLSKEDLEDIAAVALALGIDGLIIS-NTTI-S-RPDSVLG---HPHA--------------DEA-GG----L 318 (409)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE-cccC-c-Cccchhc---cccc--------------ccC-CC----c
Confidence 678777655555678888888899999987664 2111 0 1101100 0000 000 00 1
Q ss_pred hhhhcccccCHHHHHHHHHhc--CCCEEE-EecCCHHHHHHHHHcCCcEEEEe
Q 021739 144 VANQIDRSLNWKDVKWLQTIT--SLPILV-KGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 144 ~~~~~d~~~~~~~i~~ir~~~--~~Pv~v-K~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
-.+ ...+.+.+.|+++++.+ ++||+. .++.+.+++...+.+||+.|.+.
T Consensus 319 SG~-pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 319 SGK-PLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred CCc-cccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeec
Confidence 110 11223567888888877 688654 45689999999999999999874
No 455
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=90.90 E-value=7.1 Score=35.83 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=71.8
Q ss_pred CCHHHHHHHH-HcCCcEEEEecccccCCCCC--cchHHHHHHHHHHccCCCeEEEecCCCC-HHHHHHHHHcCCCEEEEc
Q 021739 174 LTAEDASLAI-QYGAAGIIVSNHGARQLDYV--PATVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGVFVG 249 (308)
Q Consensus 174 ~~~e~a~~~~-~~G~d~i~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~d~~k~l~~GAd~V~ig 249 (308)
.+++++.... +.|+|.+-++.+.-+..+.+ .-.++.|.++++.+ ++|++.=||=.. .+++.+++.+|..=|-++
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 3567776555 69999999875332222223 23678889998877 789888876443 466778999999999999
Q ss_pred hHHHHhcc-------cCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 250 RPVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 250 ~~~l~~~~-------~~G------~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
+-+..+.. ... ..-.....+.+++.++..|+.+|..
T Consensus 231 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 231 TELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred cHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 97754321 000 1223344456667777777777753
No 456
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.79 E-value=1.9 Score=40.10 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHc-CCcEEEE
Q 021739 152 LNWKDVKWLQTITSLPILVKGV-LTAEDASLAIQY-GAAGIIV 192 (308)
Q Consensus 152 ~~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~-G~d~i~v 192 (308)
..++.++.+++.+++||++-+. .+++++..+++. |+|.|.+
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 4567889999999999988776 469999999988 7999976
No 457
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=90.76 E-value=2.2 Score=40.61 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCHHHHHHHHHcC-CcEEEE
Q 021739 155 KDVKWLQTITSLPILVKGVLTAEDASLAIQYG-AAGIIV 192 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G-~d~i~v 192 (308)
...+++|+.+++||++-+..+++.+..+++.| +|.|.+
T Consensus 282 ~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 282 AFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEE
Confidence 44578888899999988878999999999888 999865
No 458
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=90.75 E-value=12 Score=33.77 Aligned_cols=46 Identities=33% Similarity=0.404 Sum_probs=33.5
Q ss_pred ccCHHHHHHHHHhcCCCEEE-Eec-CC-----HHHHHHHHHcCCcEEEEeccc
Q 021739 151 SLNWKDVKWLQTITSLPILV-KGV-LT-----AEDASLAIQYGAAGIIVSNHG 196 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~~Pv~v-K~~-~~-----~e~a~~~~~~G~d~i~v~~~g 196 (308)
...+..+..+++.+++||++ -.- .. ...+..+...|+|++.+--|.
T Consensus 180 ~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 180 TLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred CcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 45678899999888999987 221 12 456788899999987766553
No 459
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=90.71 E-value=3.1 Score=38.20 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=57.0
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccC----CCCCcchHHH----HHHHHHHccCCCeEEEec--CCCCHHH
Q 021739 165 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ----LDYVPATVMA----LEEVVQAAKGRVPVFLDG--GVRRGTD 234 (308)
Q Consensus 165 ~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~----~~~~~~~~~~----l~~i~~~~~~~ipvia~G--GI~~~~d 234 (308)
+-|+++-++.+.-.|+.+.++|.+++.+++.+-.. .|.+.-++.. +.++.+.+ ++||+++. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 45788777788889999999999999998754110 1222223332 33333333 79999986 7777888
Q ss_pred H----HHHHHcCCCEEEEch
Q 021739 235 V----FKALALGASGVFVGR 250 (308)
Q Consensus 235 ~----~k~l~~GAd~V~ig~ 250 (308)
+ .+...+||.++.|--
T Consensus 90 v~~tv~~~~~aG~agi~IED 109 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIED 109 (285)
T ss_pred HHHHHHHHHHcCCeEEEEec
Confidence 5 345558999988843
No 460
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=90.71 E-value=2.1 Score=39.80 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=64.9
Q ss_pred CceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhH
Q 021739 64 IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASY 143 (308)
Q Consensus 64 ~~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (308)
|.++.|-+ +.+.+.++.+.++++|.+++.++ ++-..+-+ -+.... -| +. ....|.-++..
T Consensus 163 Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~-NT~~~~~~-id~~~~--~~-~~-------------~~~~GGLSG~~ 222 (310)
T COG0167 163 PVFVKLAP--NITDIDEIAKAAEEAGADGLIAI-NTTKSGMK-IDLETK--KP-VL-------------ANETGGLSGPP 222 (310)
T ss_pred ceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEE-eecccccc-cccccc--cc-cc-------------CcCCCCcCccc
Confidence 78888863 88888999999999999997653 22111000 000000 00 00 00001111112
Q ss_pred hhhhcccccCHHHHHHHHHhcC--CCEE-EEecCCHHHHHHHHHcCCcEEEEec
Q 021739 144 VANQIDRSLNWKDVKWLQTITS--LPIL-VKGVLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 144 ~~~~~d~~~~~~~i~~ir~~~~--~Pv~-vK~~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
+ .+...+.|+++++.++ +||+ +.++.+.++|..-+.+||+.+.|..
T Consensus 223 i-----kp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~T 271 (310)
T COG0167 223 L-----KPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGT 271 (310)
T ss_pred c-----hHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeee
Confidence 2 2335788999998875 9965 4456899999999999999998753
No 461
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=90.71 E-value=1.2 Score=37.89 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecCCCC
Q 021739 153 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 231 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (308)
+-..|++|.+.+.+||+.|.+ -..-+|+.|...|+|+|+=|- .....+.-.-+-+... ++|.+. |-++
T Consensus 59 DP~~I~eI~~aVsIPVMAK~RIGHfvEAqiLealgVD~IDESE--------VLTpAD~~~HI~K~~F-~vPFVc--Garn 127 (208)
T PF01680_consen 59 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESE--------VLTPADEENHIDKHNF-KVPFVC--GARN 127 (208)
T ss_dssp -HHHHHHHHHH-SSEEEEEEETT-HHHHHHHHHTT-SEEEEET--------TS--S-SS----GGG--SS-EEE--EESS
T ss_pred CHHHHHHHHHheEeceeeccccceeehhhhHHHhCCceecccc--------ccccccccccccchhC-CCCeEe--cCCC
Q ss_pred HHHHHHHHHcCCCEE
Q 021739 232 GTDVFKALALGASGV 246 (308)
Q Consensus 232 ~~d~~k~l~~GAd~V 246 (308)
..++++-+.-||..+
T Consensus 128 LGEALRRI~EGAaMI 142 (208)
T PF01680_consen 128 LGEALRRIAEGAAMI 142 (208)
T ss_dssp HHHHHHHHHTT-SEE
T ss_pred HHHHHhhHHhhhhhh
No 462
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.67 E-value=2.2 Score=40.39 Aligned_cols=90 Identities=20% Similarity=0.313 Sum_probs=60.7
Q ss_pred CHHHHHHHHHhc-CCCEEEEecC------CHHHHHHHHHcCCcEEEEecc----cccC------------------CC--
Q 021739 153 NWKDVKWLQTIT-SLPILVKGVL------TAEDASLAIQYGAAGIIVSNH----GARQ------------------LD-- 201 (308)
Q Consensus 153 ~~~~i~~ir~~~-~~Pv~vK~~~------~~e~a~~~~~~G~d~i~v~~~----gg~~------------------~~-- 201 (308)
++|.|.+ .. +-|.+..... +.+..+++.++|+..|.++.- |.+. ..
T Consensus 114 s~Eei~~---~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~ 190 (351)
T cd04737 114 SLEEIAK---ASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEG 190 (351)
T ss_pred CHHHHHH---hcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccc
Confidence 3455543 33 4467777652 345578888999999888641 1100 00
Q ss_pred --------------CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021739 202 --------------YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 202 --------------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 248 (308)
....+|+.+.++++.. ++||++- ||.+++|+.++...|||++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 191 TGKGKGISEIYAAAKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred cccCcchhhhhhhccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence 0123567777777665 6899987 589999999999999999988
No 463
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=90.63 E-value=8 Score=37.21 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=57.7
Q ss_pred HHHHHHHHHh-cCCCEEEEec--CCHHH-HHHHHHcCCcEEEEecccccCCCCCcchHH-HHHHHHHHccCCCeEEE-ec
Q 021739 154 WKDVKWLQTI-TSLPILVKGV--LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVM-ALEEVVQAAKGRVPVFL-DG 227 (308)
Q Consensus 154 ~~~i~~ir~~-~~~Pv~vK~~--~~~e~-a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipvia-~G 227 (308)
.+.++++++. .+.||.+=+- -.++. ++.+.++|+|.++++..++ ..+.. .+..++ .. .+-+.. .=
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~------~~ti~~ai~~ak-k~--GikvgVD~l 284 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAP------ISTIEKAIHEAQ-KT--GIYSILDML 284 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCC------HHHHHHHHHHHH-Hc--CCEEEEEEc
Confidence 4678999887 5677765442 22233 7889999999999976432 11222 233332 22 345555 55
Q ss_pred CCCCHHHHHHHHHcCCCEEEEch
Q 021739 228 GVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 228 GI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
+..++.+.++.+..+.|.|.+.+
T Consensus 285 np~tp~e~i~~l~~~vD~Vllht 307 (391)
T PRK13307 285 NVEDPVKLLESLKVKPDVVELHR 307 (391)
T ss_pred CCCCHHHHHHHhhCCCCEEEEcc
Confidence 66788888888888999998886
No 464
>PTZ00411 transaldolase-like protein; Provisional
Probab=90.56 E-value=3.3 Score=38.93 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=64.5
Q ss_pred CHHHHHHHHHh--cCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCC-------------CCcchHHHHHHHHHHc
Q 021739 153 NWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD-------------YVPATVMALEEVVQAA 217 (308)
Q Consensus 153 ~~~~i~~ir~~--~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~ 217 (308)
+|+=++.++.. -++++-+=.+++...+..+.++|+++|...- ||-.+ .+.+....+.++.+..
T Consensus 146 T~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPfV--GRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 223 (333)
T PTZ00411 146 TWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPFV--GRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY 223 (333)
T ss_pred CHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEeec--chHHHhcccccccccccccCCchHHHHHHHHHHH
Confidence 34444444432 2677766667899999999999999997653 11101 1223344555554433
Q ss_pred c--CCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhc
Q 021739 218 K--GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 256 (308)
Q Consensus 218 ~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~ 256 (308)
+ +--..|....+|+..++.. .+|||.+-+.-.++..+
T Consensus 224 k~~g~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L 262 (333)
T PTZ00411 224 KKHGYKTIVMGASFRNTGEILE--LAGCDKLTISPKLLEEL 262 (333)
T ss_pred HHcCCCeEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHH
Confidence 2 1234566678999999987 38999999988777654
No 465
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=90.46 E-value=2.6 Score=40.12 Aligned_cols=93 Identities=22% Similarity=0.336 Sum_probs=61.4
Q ss_pred CHHHHHHHHHhcCCCEEEEec------CCHHHHHHHHHcCCcEEEEecc----cccC-----------------------
Q 021739 153 NWKDVKWLQTITSLPILVKGV------LTAEDASLAIQYGAAGIIVSNH----GARQ----------------------- 199 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~------~~~e~a~~~~~~G~d~i~v~~~----gg~~----------------------- 199 (308)
++|.|.+.. .+-|.+.=.. .+.+..+++.++|+.+|.++.- |.+.
T Consensus 122 slEev~~~~--~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~ 199 (367)
T TIGR02708 122 DLPEISEAL--NGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTG 199 (367)
T ss_pred CHHHHHhhc--CCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccC
Confidence 345554321 2445555443 2345678999999999988641 1000
Q ss_pred ----CC------CCcchHHHHHHHHHHccCCCeEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 200 ----LD------YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 200 ----~~------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
.. ....+|+.|.++++.. ++||++= ||.+.+|+.++.+.|+|++.++.
T Consensus 200 ~~~~~~~~~~~~~~~~~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 200 AGKSMDNVYKSAKQKLSPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CccchhhhccccCCCCCHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 00 0123577788887765 7899976 69999999999999999997764
No 466
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=90.32 E-value=8.6 Score=35.34 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=70.3
Q ss_pred CHHHHHHHH-HcCCcEEEEecccccCCCCCc--chHHHHHHHHHHccCCCeEEEecCCCC-HHHHHHHHHcCCCEEEEch
Q 021739 175 TAEDASLAI-QYGAAGIIVSNHGARQLDYVP--ATVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGVFVGR 250 (308)
Q Consensus 175 ~~e~a~~~~-~~G~d~i~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvia~GGI~~-~~d~~k~l~~GAd~V~ig~ 250 (308)
++++|.... +.|+|.+-++.+.-+..+.+. -.++.|.++++.+ ++|++.=||=.. .+++.+++.+|..=|-+++
T Consensus 156 ~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 156 NPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred CHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 578876665 599999998753222222232 3677899998877 789888775433 4667789999999999999
Q ss_pred HHHHhcc-------cCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 251 PVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 251 ~~l~~~~-------~~G------~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
-+-.+.. .+. ..-.....+.+++.++..|+..|..
T Consensus 234 ~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 234 ELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred HHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7654310 000 1113333445666666777777653
No 467
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=90.29 E-value=4.5 Score=38.13 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=33.9
Q ss_pred cCHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 021739 152 LNWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYG-AAGIIV 192 (308)
Q Consensus 152 ~~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G-~d~i~v 192 (308)
+.|+.++.+++.+++||++-+. .+++++..+.+.| +|+|.+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 272 PFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred hhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 3578889999999999988775 5889999888765 999976
No 468
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.17 E-value=3.1 Score=37.95 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=51.9
Q ss_pred HHHHHHHcCCcEEEEecccccCCCCCc-chHHHHHHHHHHccCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 021739 178 DASLAIQYGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPV 252 (308)
Q Consensus 178 ~a~~~~~~G~d~i~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k----~l~~GAd~V~ig~~~ 252 (308)
.++.+.+.|+|+|.+.|+.|....-.. ...+.+..+.+.. ++ -+...|+ .+..|+.+ +-.+|||++++-.|+
T Consensus 25 li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~-vi~gvg~-~~~~~ai~~a~~a~~~Gad~v~v~~P~ 101 (279)
T cd00953 25 HCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DK-VIFQVGS-LNLEESIELARAAKSFGIYAIASLPPY 101 (279)
T ss_pred HHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CC-EEEEeCc-CCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 356778899999998776553211111 1122334444444 33 2444444 34444443 223799999999998
Q ss_pred HHhcccCCHHHHHHHHHHHHH
Q 021739 253 PFSLAVDGEAGVRKVLQMLRD 273 (308)
Q Consensus 253 l~~~~~~G~~~v~~~i~~l~~ 273 (308)
++.. ..++++.+++..+.+
T Consensus 102 y~~~--~~~~~i~~yf~~v~~ 120 (279)
T cd00953 102 YFPG--IPEEWLIKYFTDISS 120 (279)
T ss_pred CCCC--CCHHHHHHHHHHHHh
Confidence 7631 135666666666555
No 469
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=90.17 E-value=1.4 Score=40.46 Aligned_cols=44 Identities=14% Similarity=0.327 Sum_probs=38.3
Q ss_pred cccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEe
Q 021739 150 RSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 150 ~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~ 193 (308)
|...++.+++|++.+++|+++-+. .+.++.+++.+.|+..|.+.
T Consensus 184 p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 229 (283)
T PRK07998 184 PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIA 229 (283)
T ss_pred CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEEC
Confidence 566789999999999999999886 45688999999999999874
No 470
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=90.13 E-value=3.9 Score=38.78 Aligned_cols=99 Identities=13% Similarity=0.052 Sum_probs=61.9
Q ss_pred ccccCHHHHHHHHHhc-CCCEEEEec------CCHHHH-HHHHHcCCcEEEEecccccC--CCCCcchH----HHHHHHH
Q 021739 149 DRSLNWKDVKWLQTIT-SLPILVKGV------LTAEDA-SLAIQYGAAGIIVSNHGARQ--LDYVPATV----MALEEVV 214 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~-~~Pv~vK~~------~~~e~a-~~~~~~G~d~i~v~~~gg~~--~~~~~~~~----~~l~~i~ 214 (308)
+|+ ..+.++.+|+.. +.|+++-+. .+++.+ +.+...++|++.+.-..... ...+...+ +.+.+++
T Consensus 104 ~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~ 182 (352)
T PRK05437 104 DPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIV 182 (352)
T ss_pred Chh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHH
Confidence 444 445677888876 889887543 224544 45556789999886422111 11122233 3455555
Q ss_pred HHccCCCeEEE--ecCCCCHHHHHHHHHcCCCEEEEch
Q 021739 215 QAAKGRVPVFL--DGGVRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 215 ~~~~~~ipvia--~GGI~~~~d~~k~l~~GAd~V~ig~ 250 (308)
+.+ ++||++ .|.-.+.+++.++...|+|++.++.
T Consensus 183 ~~~--~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 183 SAL--PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred Hhh--CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 555 789997 4544678888888889999999854
No 471
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.09 E-value=12 Score=34.05 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCceeecCCC------------CCCHHH-------HhccCCCC-ceEEeeecCC----chHHHHHHHHH
Q 021739 30 ECATARAASAAGTIMTLSSWA------------TSSVEE-------VSSTGPGI-RFFQLYVTKH----RNVDAQLVKRA 85 (308)
Q Consensus 30 ~~~~a~~a~~~g~~~~~s~~~------------~~~~e~-------i~~~~~~~-~~~Ql~~~~d----~~~~~~~~~~~ 85 (308)
|...++.+.+.|+...++.-+ ..++++ ++...+.+ ...=+-+++- .+......+.+
T Consensus 24 D~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~ 103 (264)
T PRK00311 24 DYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLM 103 (264)
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHH
Q ss_pred HHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHHHHHHHHhcC
Q 021739 86 ERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS 165 (308)
Q Consensus 86 ~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~ 165 (308)
+++|+.++.|- |.....+.|+.+++. +
T Consensus 104 ~~aGa~aVkiE----------------------------------------------------dg~~~~~~I~al~~a-g 130 (264)
T PRK00311 104 KEAGAHAVKLE----------------------------------------------------GGEEVAETIKRLVER-G 130 (264)
T ss_pred HHhCCeEEEEc----------------------------------------------------CcHHHHHHHHHHHHC-C
Q ss_pred CCEE---------------EEec--------CCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCe
Q 021739 166 LPIL---------------VKGV--------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 222 (308)
Q Consensus 166 ~Pv~---------------vK~~--------~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 222 (308)
+||+ .|.. -..+.++.+.++|||.|.+- +.+. +...++.+.+ ++|
T Consensus 131 IpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE---------~v~~-~~~~~i~~~l--~iP 198 (264)
T PRK00311 131 IPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLE---------CVPA-ELAKEITEAL--SIP 198 (264)
T ss_pred CCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEc---------CCCH-HHHHHHHHhC--CCC
Q ss_pred EEEec
Q 021739 223 VFLDG 227 (308)
Q Consensus 223 via~G 227 (308)
+|+-|
T Consensus 199 ~igiG 203 (264)
T PRK00311 199 TIGIG 203 (264)
T ss_pred EEEec
No 472
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=90.07 E-value=0.69 Score=39.33 Aligned_cols=77 Identities=25% Similarity=0.271 Sum_probs=53.1
Q ss_pred ceEEeeecCCchHHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHh
Q 021739 65 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYV 144 (308)
Q Consensus 65 ~~~Ql~~~~d~~~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (308)
..+|=.+--|-..++..++.+++.++|++.+- |.
T Consensus 93 ~tIqRiFliDS~al~~~~~~i~~~~PD~vEil---Pg------------------------------------------- 126 (175)
T PF04309_consen 93 LTIQRIFLIDSSALETGIKQIEQSKPDAVEIL---PG------------------------------------------- 126 (175)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE---SC-------------------------------------------
T ss_pred EEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc---hH-------------------------------------------
Confidence 34444446777777778887888888887763 21
Q ss_pred hhhcccccCHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021739 145 ANQIDRSLNWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 145 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~ 194 (308)
...+.++++++.++.|++..+- .+.|++..+.++|+++|..|+
T Consensus 127 -------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 127 -------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp -------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred -------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 1124677788888999999875 689999999999999998764
No 473
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=90.05 E-value=5.2 Score=35.75 Aligned_cols=84 Identities=25% Similarity=0.324 Sum_probs=54.7
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEeccc-----ccCCCCCcchHHH----HHHHHHHccCCCeEEEec--CCCC-H
Q 021739 165 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHG-----ARQLDYVPATVMA----LEEVVQAAKGRVPVFLDG--GVRR-G 232 (308)
Q Consensus 165 ~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~g-----g~~~~~~~~~~~~----l~~i~~~~~~~ipvia~G--GI~~-~ 232 (308)
+.|+++-++-+.-.++.+.++|.+++.+++.+ |. .|.+.-+++. +.++...+ ++||++++ |..+ +
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~-pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~ 84 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGY-PDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDP 84 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS--SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCC-CCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchh
Confidence 47899888899999999999999999988643 21 1223333333 34444444 79999987 6666 4
Q ss_pred HHH----HHHHHcCCCEEEEchH
Q 021739 233 TDV----FKALALGASGVFVGRP 251 (308)
Q Consensus 233 ~d~----~k~l~~GAd~V~ig~~ 251 (308)
.++ .+...+|+.++.|---
T Consensus 85 ~~v~~tv~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 85 ENVARTVRELERAGAAGINIEDQ 107 (238)
T ss_dssp HHHHHHHHHHHHCT-SEEEEESB
T ss_pred HHHHHHHHHHHHcCCcEEEeecc
Confidence 444 4555689999988543
No 474
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=90.03 E-value=0.8 Score=40.39 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhc-CCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021739 153 NWKDVKWLQTIT-SLPILVKGV-LTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 153 ~~~~i~~ir~~~-~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~ 194 (308)
..+.++++++.. +.|+++.+. .++++++.+.++|+|.|++.+
T Consensus 162 ~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 162 PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 468899999988 999999865 689999999999999998854
No 475
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=89.90 E-value=8.2 Score=36.47 Aligned_cols=111 Identities=11% Similarity=0.159 Sum_probs=74.3
Q ss_pred CCHHHHHHHH-HcCCcEEEEecccccCCCCC---c----chHHHHHHHHHHccCCCeEEEecCCCCH-------------
Q 021739 174 LTAEDASLAI-QYGAAGIIVSNHGARQLDYV---P----ATVMALEEVVQAAKGRVPVFLDGGVRRG------------- 232 (308)
Q Consensus 174 ~~~e~a~~~~-~~G~d~i~v~~~gg~~~~~~---~----~~~~~l~~i~~~~~~~ipvia~GGI~~~------------- 232 (308)
.++++|.... +.|+|.+-++...-+..+.+ | -.++.|.++++.+ +++|++.=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence 4678877665 57999999875322222211 2 3567788887766 35999998876554
Q ss_pred ---------HHHHHHHHcCCCEEEEchHHHHhcc-------cCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 233 ---------TDVFKALALGASGVFVGRPVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 233 ---------~d~~k~l~~GAd~V~ig~~~l~~~~-------~~G------~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
+++.+++.+|..-|-+++-+-.+.. ... ..-+....+.+++.++..|+.+|..
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 324 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTA 324 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8899999999999999996654321 111 1223344556777778888888865
No 476
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=89.89 E-value=3.8 Score=38.14 Aligned_cols=99 Identities=12% Similarity=0.163 Sum_probs=64.4
Q ss_pred CHHHHHHHHHh--cCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCC-------------CcchHHHHHHHHHHc
Q 021739 153 NWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDY-------------VPATVMALEEVVQAA 217 (308)
Q Consensus 153 ~~~~i~~ir~~--~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~ 217 (308)
+|+=++.++.. -++++-+=.+++.+.+..+.++|+++|...- ||-.++ ..+....+.++.+.+
T Consensus 134 T~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfV--gRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~ 211 (313)
T cd00957 134 TWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPFV--GRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY 211 (313)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeec--chHHHhhhhccccccCCccCCcHHHHHHHHHHHH
Confidence 45555555432 2777777677899999999999999987653 111110 113344444444433
Q ss_pred ---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhc
Q 021739 218 ---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 256 (308)
Q Consensus 218 ---~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~ 256 (308)
..+..|+ ...+|+..++.+ .+|||.+-+.-.++..+
T Consensus 212 ~~~~~~T~vm-aASfRn~~~v~~--laG~d~~Ti~p~ll~~L 250 (313)
T cd00957 212 KKFGYKTKVM-GASFRNIGQILA--LAGCDYLTISPALLEEL 250 (313)
T ss_pred HHcCCCcEEE-ecccCCHHHHHH--HhCCCeEEcCHHHHHHH
Confidence 2234444 567999999987 57999999998887765
No 477
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=89.87 E-value=0.88 Score=40.23 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHhc-CCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021739 152 LNWKDVKWLQTIT-SLPILVKGV-LTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 152 ~~~~~i~~ir~~~-~~Pv~vK~~-~~~e~a~~~~~~G~d~i~v~~ 194 (308)
...+.++++++.+ ++|+.+.+. .+.++++.+.++|+|.|++.+
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 3478899999988 899998864 789999999999999999854
No 478
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.85 E-value=3.4 Score=38.40 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=57.9
Q ss_pred CHHHHHHHHHhcCCCEEEEecC---C-HHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 153 NWKDVKWLQTITSLPILVKGVL---T-AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~~---~-~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
..+.|+++|+.++.|+.+.... . .+..+.+.+.|++.|.++. + .+ ...+.++++. .+.+++ -
T Consensus 50 l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~--g------~p-~~~i~~lk~~---g~~v~~--~ 115 (307)
T TIGR03151 50 VRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA--G------NP-GKYIPRLKEN---GVKVIP--V 115 (307)
T ss_pred HHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC--C------Cc-HHHHHHHHHc---CCEEEE--E
Confidence 3467889998888898877642 2 2345668899999997632 1 12 2345555433 467765 6
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 021739 229 VRRGTDVFKALALGASGVFV 248 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~i 248 (308)
+.+.+++.++..+|||.+.+
T Consensus 116 v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 116 VASVALAKRMEKAGADAVIA 135 (307)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 78999999999999999987
No 479
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=89.79 E-value=4.3 Score=37.87 Aligned_cols=101 Identities=8% Similarity=0.105 Sum_probs=64.0
Q ss_pred CHHHHHHHHHh--cCCCEEEEecCCHHHHHHHHHcCCcEEEEecc----------cccCCC-CCcchHHHHHHHHHHc--
Q 021739 153 NWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNH----------GARQLD-YVPATVMALEEVVQAA-- 217 (308)
Q Consensus 153 ~~~~i~~ir~~--~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~----------gg~~~~-~~~~~~~~l~~i~~~~-- 217 (308)
+|+=++.++.. -++++-+=.+++.+.+..+.++|+++|...-+ ++..+. ...+....+.++.+..
T Consensus 134 T~eGi~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~ 213 (317)
T TIGR00874 134 TWEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKK 213 (317)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHH
Confidence 34444444432 26777776778999999999999999976532 001100 0123344444444333
Q ss_pred -cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhc
Q 021739 218 -KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 256 (308)
Q Consensus 218 -~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~ 256 (308)
..+. .|....+|+..++.. .+|||.+-+.-.++..+
T Consensus 214 ~g~~T-~Im~ASfRn~~qv~~--laG~d~~Ti~p~ll~~L 250 (317)
T TIGR00874 214 HGYPT-EVMGASFRNKEEILA--LAGCDRLTISPALLDEL 250 (317)
T ss_pred cCCCc-EEEeeccCCHHHHHH--HHCCCeEeCCHHHHHHH
Confidence 2233 444567999999997 56999999997777654
No 480
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.62 E-value=7.1 Score=35.50 Aligned_cols=93 Identities=24% Similarity=0.392 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCEEEEec--CCHHH----HHHHHHcCCcEEEEecccccCCCCCcc---hHHHHHHHHHHccCCCeE
Q 021739 153 NWKDVKWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPA---TVMALEEVVQAAKGRVPV 223 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~--~~~e~----a~~~~~~G~d~i~v~~~gg~~~~~~~~---~~~~l~~i~~~~~~~ipv 223 (308)
..+.++++ ...++||++|.. .+.++ ++.+...|-.-+.+--+|.+....-+. .+..+..+++.. .+||
T Consensus 123 n~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV 199 (266)
T PRK13398 123 NFELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPI 199 (266)
T ss_pred CHHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCE
Q ss_pred EEecCCCCH------HHHHHHHHcCCCEEEE
Q 021739 224 FLDGGVRRG------TDVFKALALGASGVFV 248 (308)
Q Consensus 224 ia~GGI~~~------~d~~k~l~~GAd~V~i 248 (308)
+.+.+-.++ .....++++||+++++
T Consensus 200 ~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~i 230 (266)
T PRK13398 200 IVDPSHATGRRELVIPMAKAAIAAGADGLMI 230 (266)
T ss_pred EEeCCCcccchhhHHHHHHHHHHcCCCEEEE
No 481
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.61 E-value=13 Score=34.13 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=70.7
Q ss_pred CHHHHHHHH-HcCCcEEEEecccccCCCCCc--chHHHHHHHHHHccCCCeEEEecCCCC-HHHHHHHHHcCCCEEEEch
Q 021739 175 TAEDASLAI-QYGAAGIIVSNHGARQLDYVP--ATVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGVFVGR 250 (308)
Q Consensus 175 ~~e~a~~~~-~~G~d~i~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvia~GGI~~-~~d~~k~l~~GAd~V~ig~ 250 (308)
+++++.... +.|+|.+-++.+.-+..+.+. -.++.|.++++.+ ++|++.=||=.. .+++.+++.+|..=+-+++
T Consensus 156 ~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK12857 156 DPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDT 233 (284)
T ss_pred CHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 577777665 679999998753322222222 3677889998876 789888875433 4667789999999999999
Q ss_pred HHHHhcc-------cC---C---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021739 251 PVPFSLA-------VD---G---EAGVRKVLQMLRDEFELTMALSGCR 285 (308)
Q Consensus 251 ~~l~~~~-------~~---G---~~~v~~~i~~l~~~l~~~m~~~G~~ 285 (308)
-+..+.. .. . ..-.....+.+++.++..|+..|..
T Consensus 234 ~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 234 NIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7654321 00 0 1123334455666666777777653
No 482
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=89.58 E-value=3.6 Score=37.16 Aligned_cols=43 Identities=33% Similarity=0.418 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEeccc
Q 021739 154 WKDVKWLQTITSLPILVKGV-------LTAEDASLAIQYGAAGIIVSNHG 196 (308)
Q Consensus 154 ~~~i~~ir~~~~~Pv~vK~~-------~~~e~a~~~~~~G~d~i~v~~~g 196 (308)
+..|-.+|+.+++||++-.. +-.-.+..+..+|+|++.+--|.
T Consensus 203 i~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp 252 (286)
T COG2876 203 ISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHP 252 (286)
T ss_pred hHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecC
Confidence 56688999999999998654 11234788899999999987664
No 483
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=89.54 E-value=2.1 Score=39.20 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=39.1
Q ss_pred ccccCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEe
Q 021739 149 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 149 d~~~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~ 193 (308)
.|.+.++.+++|++.+++|+++-+. ...++.+++.+.|+.-|-+.
T Consensus 180 ~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 226 (276)
T cd00947 180 EPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININ 226 (276)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 5677899999999999999998886 45688999999999999764
No 484
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=89.49 E-value=2.5 Score=38.73 Aligned_cols=178 Identities=14% Similarity=0.162 Sum_probs=96.5
Q ss_pred ccCCceEeccccCcccCCC---HHHHHHHHHHHHcC-CceeecCCCCCCHHHHhccCC-CCceEEeeecC------CchH
Q 021739 9 NISMPIMIAPTAFQKMAHP---EGECATARAASAAG-TIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTK------HRNV 77 (308)
Q Consensus 9 ~~~~Pi~iapm~~~~~~~~---~~~~~~a~~a~~~g-~~~~~s~~~~~~~e~i~~~~~-~~~~~Ql~~~~------d~~~ 77 (308)
+...|++|.-.-+.--..+ .--..+...|.+.+ +|.++----..+++.+...-. +.-++|+- .+ +.+.
T Consensus 38 ~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid-~s~l~~~eni~~ 116 (282)
T TIGR01859 38 EENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMID-GSHLPFEENLAL 116 (282)
T ss_pred HhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEC-CCCCCHHHHHHH
Confidence 3568988865432211111 11123556677888 888876432234554443322 34567765 33 2467
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCcchHHhh--hccCCCCccccccccc-cccccCCCCCCchhhhHhhhhcccccCH
Q 021739 78 DAQLVKRAERAGFKAIALTVDTPRLGRREADIK--NRFVLPPHLTLKNYEG-LYIGKMDKTDDSGLASYVANQIDRSLNW 154 (308)
Q Consensus 78 ~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~--~~~~~p~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 154 (308)
+.++++.++..|+. +..-+++ ..+.....+- ..+..|..+ ..+.. ...+.+--..|+.++.+ ...+.+.+
T Consensus 117 t~~v~~~a~~~gv~-Ve~ElG~-~gg~ed~~~g~~~~~t~~eea--~~f~~~tgvD~Lavs~Gt~hg~~---~~~~~l~~ 189 (282)
T TIGR01859 117 TKKVVEIAHAKGVS-VEAELGT-LGGIEDGVDEKEAELADPDEA--EQFVKETGVDYLAAAIGTSHGKY---KGEPGLDF 189 (282)
T ss_pred HHHHHHHHHHcCCE-EEEeeCC-CcCccccccccccccCCHHHH--HHHHHHHCcCEEeeccCcccccc---CCCCccCH
Confidence 89999999998875 4445554 2221110000 011111100 00000 01111111112222111 12466789
Q ss_pred HHHHHHHHhcCCCEEEEe--cCCHHHHHHHHHcCCcEEEEec
Q 021739 155 KDVKWLQTITSLPILVKG--VLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~--~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
+.++++++.+++|++.=+ ..+.+..+.+.++|++.|.+..
T Consensus 190 e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 190 ERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDT 231 (282)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECc
Confidence 999999999999998888 5788999999999999998753
No 485
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=89.48 E-value=2.2 Score=40.02 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=33.4
Q ss_pred CHHHHHHHHHhcCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 021739 153 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYG-AAGIIV 192 (308)
Q Consensus 153 ~~~~i~~ir~~~~~Pv~vK~~-~~~e~a~~~~~~G-~d~i~v 192 (308)
.++..+++++.+++||+.-+. .+++++..+++.| +|+|.+
T Consensus 278 ~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 278 QVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred cHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 456788999999999998765 5899999999988 898864
No 486
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=89.39 E-value=3 Score=36.87 Aligned_cols=40 Identities=10% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHHHHHh---c--CCCEEEEecCCHHHHHHHHHcCCcEEEEe
Q 021739 154 WKDVKWLQTI---T--SLPILVKGVLTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 154 ~~~i~~ir~~---~--~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~ 193 (308)
++.|+++|+. . +..|.|=+..+.+.+..+.++|||.++++
T Consensus 155 l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 155 LDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAG 199 (223)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 4556665553 2 34466667789999999999999999763
No 487
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=89.35 E-value=6.3 Score=34.57 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 155 KDVKWLQTITSLPILVKGVL------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~------~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
+.++++++..+.|+.+.... ..+.++.+.++|+|+|.+... .....+.++.+ ..++++. .
T Consensus 43 ~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~---------~~~~~~~~~~~---~~i~~i~--~ 108 (236)
T cd04730 43 AEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG---------PPAEVVERLKA---AGIKVIP--T 108 (236)
T ss_pred HHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC---------CCHHHHHHHHH---cCCEEEE--e
Confidence 45677776555566665542 234688999999999988432 12333344332 2567765 4
Q ss_pred CCCHHHHHHHHHcCCCEEEEc
Q 021739 229 VRRGTDVFKALALGASGVFVG 249 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig 249 (308)
+.+.+++.++.+.|+|.+.+.
T Consensus 109 v~~~~~~~~~~~~gad~i~~~ 129 (236)
T cd04730 109 VTSVEEARKAEAAGADALVAQ 129 (236)
T ss_pred CCCHHHHHHHHHcCCCEEEEe
Confidence 778888888888999998763
No 488
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=89.29 E-value=16 Score=32.72 Aligned_cols=101 Identities=21% Similarity=0.171 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHH---HHHHHHccCC-CeEEEecCCC
Q 021739 155 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMAL---EEVVQAAKGR-VPVFLDGGVR 230 (308)
Q Consensus 155 ~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l---~~i~~~~~~~-ipvia~GGI~ 230 (308)
..++.+++. ++++-+=.+++...+..+.++|+++|..+- ||-.|++......+ .++....... ..+++ =+++
T Consensus 106 ~Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iSpFv--gRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~v-as~~ 181 (239)
T COG0176 106 KAIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISPFV--GRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLV-ASAR 181 (239)
T ss_pred HHHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEEeec--chHHhhccCchHHHHHHHHHHHHhccccceEEE-ecCc
Confidence 345555544 466665567899999999999999886542 34333333222333 3333332222 34444 4699
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHHhcccC
Q 021739 231 RGTDVFKALALGASGVFVGRPVPFSLAVD 259 (308)
Q Consensus 231 ~~~d~~k~l~~GAd~V~ig~~~l~~~~~~ 259 (308)
++.++..+..+|||.+-+.-.++..+...
T Consensus 182 ~~~~~~~~~l~G~d~~Tip~~~l~~l~~~ 210 (239)
T COG0176 182 FPNHVYIAALAGADVLTIPPDLLKQLLKH 210 (239)
T ss_pred cHHHHHHHHHhCCCcccCCHHHHHHHHhc
Confidence 99999999999999999998888776544
No 489
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=89.19 E-value=4.6 Score=35.26 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=24.9
Q ss_pred eEEEecCCCCHH-HH---------HHHHHcCCCEEEEchHHHH
Q 021739 222 PVFLDGGVRRGT-DV---------FKALALGASGVFVGRPVPF 254 (308)
Q Consensus 222 pvia~GGI~~~~-d~---------~k~l~~GAd~V~ig~~~l~ 254 (308)
-++.++||+-.. +. ..+...|||.+.+||+++.
T Consensus 159 ~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~ 201 (213)
T TIGR01740 159 FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYA 201 (213)
T ss_pred ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcC
Confidence 478889998432 22 5667899999999998774
No 490
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=89.10 E-value=13 Score=31.58 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=35.9
Q ss_pred cCHHHHHHHHHhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021739 152 LNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 152 ~~~~~i~~ir~~~-~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
..++.++++++.. ++||++-+..+.+.+..+.+.|+|+|.+..
T Consensus 138 ~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~ 181 (196)
T TIGR00693 138 AGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVS 181 (196)
T ss_pred CCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhH
Confidence 3578888888765 599998888899999999999999998753
No 491
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=89.09 E-value=2.3 Score=39.24 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=56.3
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEeccccc----C-CCCCcchHHH----HHHHHHHccCCCeEEEec--CCCCHH
Q 021739 165 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----Q-LDYVPATVMA----LEEVVQAAKGRVPVFLDG--GVRRGT 233 (308)
Q Consensus 165 ~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~----~-~~~~~~~~~~----l~~i~~~~~~~ipvia~G--GI~~~~ 233 (308)
+-|+++-++-+.-.|+.+.++|.+++.+++.+.. . .|.+.-+++. +.++...+ ++||+++. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 4588887888888899999999999998764321 1 1223333332 33333333 79999987 666666
Q ss_pred HH----HHHHHcCCCEEEEch
Q 021739 234 DV----FKALALGASGVFVGR 250 (308)
Q Consensus 234 d~----~k~l~~GAd~V~ig~ 250 (308)
++ .++..+||.++.|--
T Consensus 93 ~v~r~V~~~~~aGaagi~IED 113 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLED 113 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEEC
Confidence 65 455568999988843
No 492
>PRK12346 transaldolase A; Provisional
Probab=89.09 E-value=5 Score=37.40 Aligned_cols=99 Identities=11% Similarity=0.165 Sum_probs=63.5
Q ss_pred CHHHHHHHHHh--cCCCEEEEecCCHHHHHHHHHcCCcEEEEecccccCCC-------------CCcchHHHHHHHHHHc
Q 021739 153 NWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD-------------YVPATVMALEEVVQAA 217 (308)
Q Consensus 153 ~~~~i~~ir~~--~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~ 217 (308)
+|+=++.++.. -++++-+=.+++.+.+..+.++|+++|...- ||-.+ .+.+....+.++.+..
T Consensus 135 T~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISPfV--gRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 212 (316)
T PRK12346 135 TWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPFV--GRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY 212 (316)
T ss_pred CHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEecc--cHHHHhhhhccccccccccCCChHHHHHHHHHHH
Confidence 45555555442 2677766667899999999999999997543 11100 1223344444444433
Q ss_pred ---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHhc
Q 021739 218 ---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 256 (308)
Q Consensus 218 ---~~~ipvia~GGI~~~~d~~k~l~~GAd~V~ig~~~l~~~ 256 (308)
..+ ..|....+|+..++. ..+|||.+-+.-.++..+
T Consensus 213 k~~~~~-T~Vm~ASfRn~~qi~--alaG~d~lTi~p~ll~~L 251 (316)
T PRK12346 213 KQHRYE-TIVMGASFRRTEQIL--ALAGCDRLTISPNLLKEL 251 (316)
T ss_pred HHcCCC-cEEEecccCCHHHHH--HHhCCCEEeCCHHHHHHH
Confidence 223 344446799999998 346999999998887665
No 493
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=89.07 E-value=2.1 Score=39.44 Aligned_cols=44 Identities=20% Similarity=0.445 Sum_probs=37.8
Q ss_pred cc-cCHHHHHHHHHhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEe
Q 021739 150 RS-LNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVS 193 (308)
Q Consensus 150 ~~-~~~~~i~~ir~~~~~Pv~vK~~--~~~e~a~~~~~~G~d~i~v~ 193 (308)
|. +.++.+++|++.+++|+++-+. .+.++.+++.+.|+.-|-+.
T Consensus 190 p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 236 (288)
T TIGR00167 190 PKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNID 236 (288)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcC
Confidence 44 6789999999999999999886 45688999999999999764
No 494
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.93 E-value=8.6 Score=36.43 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=34.2
Q ss_pred ccCHHHHHHHHHhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEeccc
Q 021739 151 SLNWKDVKWLQTITSLPILVKGV-------LTAEDASLAIQYGAAGIIVSNHG 196 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~~Pv~vK~~-------~~~e~a~~~~~~G~d~i~v~~~g 196 (308)
...+..+..+|+.+++||++=-. ..+..+..+..+|||++.+--|.
T Consensus 257 ~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 257 TLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred CcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 34678899999988999976532 23456788899999977776553
No 495
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=88.91 E-value=13 Score=33.50 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHH----H
Q 021739 82 VKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD----V 157 (308)
Q Consensus 82 ~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----i 157 (308)
.+.++++|++++-++ .+.....+...-....+++. +
T Consensus 25 A~l~e~aG~d~i~vG----------------------------------------ds~~~~~lG~pDt~~vtl~em~~~~ 64 (254)
T cd06557 25 AKLADEAGVDVILVG----------------------------------------DSLGMVVLGYDSTLPVTLDEMIYHT 64 (254)
T ss_pred HHHHHHcCCCEEEEC----------------------------------------HHHHHHHcCCCCCCCcCHHHHHHHH
Q ss_pred HHHHHhcCCCEEEEec-----CC-----HHHHHHHHH-cCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEE--
Q 021739 158 KWLQTITSLPILVKGV-----LT-----AEDASLAIQ-YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF-- 224 (308)
Q Consensus 158 ~~ir~~~~~Pv~vK~~-----~~-----~e~a~~~~~-~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi-- 224 (308)
+.+++.++.|+++-.. .+ .+.+.++.+ +|+++|.+-+ ..+....++......+||+
T Consensus 65 ~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd-----------~~~~~~~I~al~~agipV~gH 133 (254)
T cd06557 65 RAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEG-----------GAEVAETIRALVDAGIPVMGH 133 (254)
T ss_pred HHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcC-----------cHHHHHHHHHHHHcCCCeecc
Q ss_pred ---------EecCCCCH-----------HHHHHHHHcCCCEEEE
Q 021739 225 ---------LDGGVRRG-----------TDVFKALALGASGVFV 248 (308)
Q Consensus 225 ---------a~GGI~~~-----------~d~~k~l~~GAd~V~i 248 (308)
..||.+-- +++..+.++||+++.+
T Consensus 134 iGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~l 177 (254)
T cd06557 134 IGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVL 177 (254)
T ss_pred ccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEE
No 496
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=88.74 E-value=14 Score=35.03 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=38.2
Q ss_pred ccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021739 151 SLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
...++.++++++..++|++.=+..+++.+..+.++|+++|.+..
T Consensus 280 ~~Gle~l~~~~~~~~iPv~AiGGI~~~ni~~l~~~Ga~gVAvis 323 (347)
T PRK02615 280 PAGLEYLKYAAKEAPIPWFAIGGIDKSNIPEVLQAGAKRVAVVR 323 (347)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCcEEEEeH
Confidence 34578899998888999998888899999999999999998865
No 497
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=88.59 E-value=19 Score=32.86 Aligned_cols=181 Identities=19% Similarity=0.120 Sum_probs=103.6
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHHc-CCceee--c---CCCCCCHHHHhc-------cCCC--CceEEeeecCCch
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASAA-GTIMTL--S---SWATSSVEEVSS-------TGPG--IRFFQLYVTKHRN 76 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~~-g~~~~~--s---~~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~ 76 (308)
.|..+.|+.-.+-.+.++-..+.+-+.+. |+...+ + |..+.+.+|..+ ...+ +.+++.. ..+.+
T Consensus 5 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~ 83 (288)
T cd00954 5 IAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLK 83 (288)
T ss_pred eeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHH
Confidence 46778888654445665566777777777 866543 2 224456655332 1222 5566665 45667
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHH
Q 021739 77 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 156 (308)
Q Consensus 77 ~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 156 (308)
...++.+.+++.|++++.+.. |... + . +.+-..+.
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~~--P~y~------------~---------------------~----------~~~~i~~~ 118 (288)
T cd00954 84 ESQELAKHAEELGYDAISAIT--PFYY------------K---------------------F----------SFEEIKDY 118 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEeC--CCCC------------C---------------------C----------CHHHHHHH
Confidence 778888899999999987652 3210 0 0 01112356
Q ss_pred HHHHHHhc-CCCEEEEec-------CCHHHHHHHHHcCCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 157 VKWLQTIT-SLPILVKGV-------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 157 i~~ir~~~-~~Pv~vK~~-------~~~e~a~~~~~~G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
.+.+.+.+ ++||++=.. ++++...++.+. ...+-+=... .+...+.++.+....++.++...
T Consensus 119 ~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~-pnivgiK~s~--------~d~~~~~~~~~~~~~~~~v~~G~- 188 (288)
T cd00954 119 YREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEI-PNVIGVKFTA--------TDLYDLERIRAASPEDKLVLNGF- 188 (288)
T ss_pred HHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcC-CCEEEEEeCC--------CCHHHHHHHHHhCCCCcEEEEec-
Confidence 77787888 899887432 467778888762 2222111111 12333444544443345454422
Q ss_pred CCCHHHHHHHHHcCCCEEEEchH
Q 021739 229 VRRGTDVFKALALGASGVFVGRP 251 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig~~ 251 (308)
...+...+.+|+++.+.|..
T Consensus 189 ---d~~~~~~~~~G~~G~i~~~~ 208 (288)
T cd00954 189 ---DEMLLSALALGADGAIGSTY 208 (288)
T ss_pred ---hHHHHHHHHcCCCEEEeChh
Confidence 23456678899999887754
No 498
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=88.32 E-value=20 Score=32.80 Aligned_cols=178 Identities=17% Similarity=0.142 Sum_probs=106.1
Q ss_pred CceEeccccCcccCCCHHHHHHHHHHHH-cCCceee--cC---CCCCCHHHHhc-------cCCC--CceEEeeecCCch
Q 021739 12 MPIMIAPTAFQKMAHPEGECATARAASA-AGTIMTL--SS---WATSSVEEVSS-------TGPG--IRFFQLYVTKHRN 76 (308)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~~a~~a~~-~g~~~~~--s~---~~~~~~e~i~~-------~~~~--~~~~Ql~~~~d~~ 76 (308)
.|.++.|+.-.+-.+.++-..+.+-+.+ .|+...+ ++ .-+.+.+|..+ ...+ +.+.+.. ..+.+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 4778889875555666667778888888 8875433 22 23556655332 2222 5677765 45677
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCcchHHhhhccCCCCccccccccccccccCCCCCCchhhhHhhhhcccccCHHH
Q 021739 77 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 156 (308)
Q Consensus 77 ~~~~~~~~~~~~g~~~i~i~~~~p~~~~r~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 156 (308)
...++.+.+++.|++++.+.. |... + .. + +-..+.
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~--P~y~------------~---------------------~~-~---------~~l~~~ 121 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT--PFYY------------P---------------------FS-F---------EEICDY 121 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC--CcCC------------C---------------------CC-H---------HHHHHH
Confidence 778888999999999987652 3220 0 00 1 112356
Q ss_pred HHHHHHhcCCCEEEEec-------CCHHHHHHHHHc-CCcEEEEecccccCCCCCcchHHHHHHHHHHccCCCeEEEecC
Q 021739 157 VKWLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 228 (308)
Q Consensus 157 i~~ir~~~~~Pv~vK~~-------~~~e~a~~~~~~-G~d~i~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (308)
.+++.+.+++||++=.. ++++...++.+. .+-+|.-+. .++..+.++.+..+ +..+ .+|
T Consensus 122 f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~----------~d~~~~~~~~~~~~-~~~v-~~G- 188 (293)
T PRK04147 122 YREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTA----------GDLYQLERIRKAFP-DKLI-YNG- 188 (293)
T ss_pred HHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCC-CCEE-EEe-
Confidence 77777778899887543 467777777753 222332211 12334444544432 3444 334
Q ss_pred CCCHHHHHHHHHcCCCEEEEch
Q 021739 229 VRRGTDVFKALALGASGVFVGR 250 (308)
Q Consensus 229 I~~~~d~~k~l~~GAd~V~ig~ 250 (308)
+..-+...+.+|+++++.+.
T Consensus 189 --~d~~~~~~l~~G~~G~is~~ 208 (293)
T PRK04147 189 --FDEMFASGLLAGADGAIGST 208 (293)
T ss_pred --ehHHHHHHHHcCCCEEEech
Confidence 23446677889999998765
No 499
>PRK08999 hypothetical protein; Provisional
Probab=88.30 E-value=11 Score=34.80 Aligned_cols=44 Identities=30% Similarity=0.362 Sum_probs=38.0
Q ss_pred ccCHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021739 151 SLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN 194 (308)
Q Consensus 151 ~~~~~~i~~ir~~~~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~ 194 (308)
...++.++++++..++||++=+..+.+.+..+.++|+++|.+..
T Consensus 266 ~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 266 PLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhCCCEEEEEE
Confidence 34578889998888999998888899999999999999998753
No 500
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=88.30 E-value=5.6 Score=36.43 Aligned_cols=84 Identities=24% Similarity=0.348 Sum_probs=57.2
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEecccccC----CCCCcchHHHH----HHHHHHccCCCeEEEec--CCCCHHH
Q 021739 165 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ----LDYVPATVMAL----EEVVQAAKGRVPVFLDG--GVRRGTD 234 (308)
Q Consensus 165 ~~Pv~vK~~~~~e~a~~~~~~G~d~i~v~~~gg~~----~~~~~~~~~~l----~~i~~~~~~~ipvia~G--GI~~~~d 234 (308)
+-|+.+-+..++-.|+.+.++|.+++.+|+.+-.. .|.+..+++.+ .++.+++ ++||+++. |..++..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 45788778889999999999999999998864211 23344445443 3333343 79999986 6655544
Q ss_pred HH----HHHHcCCCEEEEch
Q 021739 235 VF----KALALGASGVFVGR 250 (308)
Q Consensus 235 ~~----k~l~~GAd~V~ig~ 250 (308)
+. ++...|+.++.|--
T Consensus 95 vartV~~~~~aG~agi~iED 114 (289)
T COG2513 95 VARTVRELEQAGAAGIHIED 114 (289)
T ss_pred HHHHHHHHHHcCcceeeeee
Confidence 44 55568998887754
Done!