Your job contains 1 sequence.
>021740
MEERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVA
EDLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVA
EKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKD
PAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISED
KIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL
ERGTALPD
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021740
(308 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2039395 - symbol:AT2G16860 "AT2G16860" species... 1058 5.7e-107 1
UNIPROTKB|F1P0B5 - symbol:SYF2 "Uncharacterized protein" ... 338 1.1e-30 1
UNIPROTKB|I3LK70 - symbol:SYF2 "Uncharacterized protein" ... 337 1.4e-30 1
MGI|MGI:1915842 - symbol:Syf2 "SYF2 homolog, RNA splicing... 337 1.4e-30 1
RGD|621592 - symbol:Syf2 "SYF2 homolog, RNA splicing fact... 337 1.4e-30 1
UNIPROTKB|F1N607 - symbol:SYF2 "Uncharacterized protein" ... 335 2.3e-30 1
UNIPROTKB|O95926 - symbol:SYF2 "Pre-mRNA-splicing factor ... 325 2.7e-29 1
ZFIN|ZDB-GENE-040801-170 - symbol:syf2 "SYF2 homolog, RNA... 323 4.4e-29 1
DICTYBASE|DDB_G0284573 - symbol:syf2 "putative pre-mRNA-s... 270 1.8e-23 1
FB|FBgn0033556 - symbol:CG12343 species:7227 "Drosophila ... 263 1.0e-22 1
UNIPROTKB|Q28XK6 - symbol:Syf2 "Pre-mRNA-splicing factor ... 262 1.3e-22 1
WB|WBGene00019402 - symbol:K04G7.11 species:6239 "Caenorh... 223 1.7e-18 1
POMBASE|SPBC3E7.13c - symbol:syf2 "splicing factor, SYF2 ... 206 1.1e-16 1
ASPGD|ASPL0000050771 - symbol:AN1861 species:162425 "Emer... 152 2.2e-12 2
UNIPROTKB|Q521C0 - symbol:SYF2 "Pre-mRNA-splicing factor ... 152 2.9e-10 2
ASPGD|ASPL0000058158 - symbol:AN0074 species:162425 "Emer... 117 0.00026 1
TAIR|locus:2115245 - symbol:AT4G36520 species:3702 "Arabi... 123 0.00033 1
DICTYBASE|DDB_G0288069 - symbol:DDB_G0288069 species:4468... 91 0.00044 2
UNIPROTKB|E1BVB9 - symbol:CALD1 "Caldesmon" species:9031 ... 117 0.00072 1
DICTYBASE|DDB_G0285911 - symbol:DDB_G0285911 "LIM-type zi... 99 0.00074 2
UNIPROTKB|F1NT51 - symbol:CALD1 "Caldesmon" species:9031 ... 117 0.00074 1
UNIPROTKB|P12957 - symbol:CALD1 "Caldesmon" species:9031 ... 117 0.00074 1
>TAIR|locus:2039395 [details] [associations]
symbol:AT2G16860 "AT2G16860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002685 EMBL:AC005825 EMBL:AC005167 KO:K12868
HOGENOM:HOG000190170 InterPro:IPR013260 PANTHER:PTHR13264
Pfam:PF08231 OMA:PECINSS EMBL:AY099601 EMBL:AY128842
IPI:IPI00535385 PIR:B84545 RefSeq:NP_565396.1 UniGene:At.12859
PRIDE:Q9ZVX7 EnsemblPlants:AT2G16860.1 GeneID:816187
KEGG:ath:AT2G16860 TAIR:At2g16860 InParanoid:Q9ZVX7
PhylomeDB:Q9ZVX7 ProtClustDB:CLSN2688176 ArrayExpress:Q9ZVX7
Genevestigator:Q9ZVX7 Uniprot:Q9ZVX7
Length = 298
Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
Identities = 207/308 (67%), Positives = 241/308 (78%)
Query: 1 MEERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVA 60
+ ERRVHPDCINASNPYHECV+YCF+KIAEAK R E+ Q +G + +
Sbjct: 2 VSERRVHPDCINASNPYHECVEYCFKKIAEAKARF---EK---QNTGLAKVHEQTREPLD 55
Query: 61 EDLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVA 120
+ E+ E + DN +P + D T+LTGRQKKLFELRLKMNEARK+NQT + +
Sbjct: 56 DKRIEEDSSEEEEEEEDNQEP-----QVDVTQLTGRQKKLFELRLKMNEARKSNQTDVGS 110
Query: 121 EKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXD 180
EKK+ME P E++GISKQKWLE RK+KIGKLLDANGLDMT+A+MLDTQ +
Sbjct: 111 EKKKMEAPTETKGISKQKWLEGRKKKIGKLLDANGLDMTQAYMLDTQEAAESKYKKWEKE 170
Query: 181 PAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISED 240
P P GWDVFNQK LY+AYKKRTKN++VDLEEYN+M+ ADPEFYR+ASSLQYGK+PK S+D
Sbjct: 171 PTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKAPKTSQD 230
Query: 241 KIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL 300
KID+M KEL DRE+KR FSRRR+F EEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL
Sbjct: 231 KIDKMAKELLDREQKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL 290
Query: 301 ERGTALPD 308
ERGTALPD
Sbjct: 291 ERGTALPD 298
>UNIPROTKB|F1P0B5 [details] [associations]
symbol:SYF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
GO:GO:0071013 GeneTree:ENSGT00390000017845 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 EMBL:AADN02043972
IPI:IPI00811534 Ensembl:ENSGALT00000001893 Uniprot:F1P0B5
Length = 235
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 90/241 (37%), Positives = 131/241 (54%)
Query: 72 AGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRME-PPQE 130
+GS+ D +P+ +V K R +K EL LK NEARK N +V E KR++ PP
Sbjct: 3 SGSE-DEAQPSAAEVAAA-QKREERLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPPNW 60
Query: 131 SRGISKQKW---LEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGW 186
++ +W +EE+K++ A G D + +L+ P G+
Sbjct: 61 EAKKARLEWELKVEEKKKECA----ARGEDYERVKLLEISAEDAERWERKKKRKNPDLGF 116
Query: 187 DVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPE-FYRDASSLQYGKSPKISEDKIDRM 245
+ L Y++ T+ ++ DLE+Y K+KE E Y + SL +G E IDRM
Sbjct: 117 SDYAAAQLRQ-YQRLTRQIKPDLEQYEKLKEQYGEALYPTSDSLLHGTHVPDKEG-IDRM 174
Query: 246 VKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTA 305
V +L+ + EKR +SRRR ++++ DID IN+RN FNKK ER +GKYT EIK NLERGTA
Sbjct: 175 VADLEKQIEKREKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTA 234
Query: 306 L 306
+
Sbjct: 235 V 235
>UNIPROTKB|I3LK70 [details] [associations]
symbol:SYF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
GO:GO:0071013 GeneTree:ENSGT00390000017845 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231
Ensembl:ENSSSCT00000026402 Uniprot:I3LK70
Length = 249
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 88/239 (36%), Positives = 133/239 (55%)
Query: 73 GSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--E 130
G+ ++ +P E K R +K EL LK NEARK N +V E KR++ P E
Sbjct: 16 GNGAEEQQPPLGPEELAAQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWE 75
Query: 131 SRGISKQKW-LEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGWDV 188
++ ++ +W L+E ++K K A G D K +L+ P G+
Sbjct: 76 AKK-ARLEWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSD 132
Query: 189 FNQKALYDAYKKRTKNVEVDLEEYNKMKEAD-PEFYRDASSLQYGKSPKISEDKIDRMVK 247
+ L Y + TK ++ D+E Y +++E EF+ ++SL +G +E+ IDRMV
Sbjct: 133 YAAAQLRQ-YHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVV 190
Query: 248 ELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
+L+ + EKR+ +SRRR ++++ DID IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 191 DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249
>MGI|MGI:1915842 [details] [associations]
symbol:Syf2 "SYF2 homolog, RNA splicing factor (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007369 "gastrulation" evidence=IMP] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0048568 "embryonic organ
development" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] MGI:MGI:1915842 GO:GO:0005634
GO:GO:0008380 GO:GO:0001701 GO:GO:0006397 GO:GO:0071013
GO:GO:0007369 GO:GO:0048568 GO:GO:0031576 KO:K12868
eggNOG:NOG147890 GeneTree:ENSGT00390000017845 HOGENOM:HOG000190170
OMA:AYNDDAD InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231
CTD:25949 HOVERGEN:HBG080129 OrthoDB:EOG4X0MT8 EMBL:AY155574
EMBL:AY033432 EMBL:AK003787 EMBL:AK152794 EMBL:BC051484
IPI:IPI00133410 RefSeq:NP_081056.1 UniGene:Mm.29989
ProteinModelPortal:Q9D198 STRING:Q9D198 PhosphoSite:Q9D198
PRIDE:Q9D198 Ensembl:ENSMUST00000030622 GeneID:68592 KEGG:mmu:68592
InParanoid:Q9D198 ChiTaRS:SYF2 NextBio:327522 Bgee:Q9D198
CleanEx:MM_SYF2 Genevestigator:Q9D198 GermOnline:ENSMUSG00000028821
Uniprot:Q9D198
Length = 242
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 90/239 (37%), Positives = 133/239 (55%)
Query: 74 SDSDNDKP-AEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--E 130
+D +P A E++ K R +K EL LK NEARK N +V E KR++ P E
Sbjct: 11 ADGAEARPLAAEELAAQ--KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWE 68
Query: 131 SRGISKQKW-LEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGWDV 188
++ ++ +W L+E ++K K A G D K +L+ P G+
Sbjct: 69 AKK-ARLEWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSD 125
Query: 189 FNQKALYDAYKKRTKNVEVDLEEYNKMKEADPE-FYRDASSLQYGKSPKISEDKIDRMVK 247
+ L Y + TK ++ D+E Y + +E E F+ ++SL +G SE+ IDRMV
Sbjct: 126 YAAAQLRQ-YHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVL 183
Query: 248 ELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
+L+ + EKR+ +SRRR ++++ DID IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 184 DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>RGD|621592 [details] [associations]
symbol:Syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007369
"gastrulation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0048568 "embryonic organ development"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] RGD:621592 GO:GO:0008380 GO:GO:0006397
GO:GO:0071013 KO:K12868 eggNOG:NOG147890
GeneTree:ENSGT00390000017845 HOGENOM:HOG000190170
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 CTD:25949
HOVERGEN:HBG080129 OrthoDB:EOG4X0MT8 EMBL:AF366369 EMBL:BC097289
IPI:IPI00208161 RefSeq:NP_596908.1 UniGene:Rn.162117
ProteinModelPortal:Q4QRB2 STRING:Q4QRB2 PRIDE:Q4QRB2
Ensembl:ENSRNOT00000024271 GeneID:170933 KEGG:rno:170933
UCSC:RGD:621592 InParanoid:Q4QRB2 NextBio:621455
Genevestigator:Q4QRB2 GermOnline:ENSRNOG00000017742 Uniprot:Q4QRB2
Length = 242
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 90/239 (37%), Positives = 133/239 (55%)
Query: 74 SDSDNDKP-AEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--E 130
+D +P A E++ K R +K EL LK NEARK N +V E KR++ P E
Sbjct: 11 ADGAEARPLAAEELAAQ--KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWE 68
Query: 131 SRGISKQKW-LEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGWDV 188
++ ++ +W L+E ++K K A G D K +L+ P G+
Sbjct: 69 AKK-ARLEWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSD 125
Query: 189 FNQKALYDAYKKRTKNVEVDLEEYNKMKEADPE-FYRDASSLQYGKSPKISEDKIDRMVK 247
+ L Y + TK ++ D+E Y + +E E F+ ++SL +G SE+ IDRMV
Sbjct: 126 YAAAQLRQ-YHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVL 183
Query: 248 ELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
+L+ + EKR+ +SRRR ++++ DID IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 184 DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>UNIPROTKB|F1N607 [details] [associations]
symbol:SYF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
GO:GO:0071013 GeneTree:ENSGT00390000017845 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 EMBL:DAAA02006397
IPI:IPI01002469 Ensembl:ENSBTAT00000002165 Uniprot:F1N607
Length = 235
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 89/239 (37%), Positives = 132/239 (55%)
Query: 73 GSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--E 130
G + PA + E K R +K EL LK NEARK N +V E KR++ P E
Sbjct: 3 GGAEEQQPPAGAE-ELASQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWE 61
Query: 131 SRGISKQKW-LEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGWDV 188
++ ++ +W L+E ++K K A G D K +L+ P G+
Sbjct: 62 AKK-ARLEWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSD 118
Query: 189 FNQKALYDAYKKRTKNVEVDLEEYNKMKEAD-PEFYRDASSLQYGKSPKISEDKIDRMVK 247
+ L Y + TK ++ D+E Y +++E EF+ ++SL +G +E+ IDRMV
Sbjct: 119 YAAAQLRQ-YHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVL 176
Query: 248 ELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
+L+ + EKR+ +SRRR ++++ DID IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 177 DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 235
>UNIPROTKB|O95926 [details] [associations]
symbol:SYF2 "Pre-mRNA-splicing factor SYF2" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] GO:GO:0000398 GO:GO:0071013
KO:K12868 eggNOG:NOG147890 HOGENOM:HOG000190170 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 CTD:25949
HOVERGEN:HBG080129 OrthoDB:EOG4X0MT8 EMBL:AF273089 EMBL:AL080166
EMBL:AL031432 EMBL:BC010862 IPI:IPI00022963 PIR:T12485
RefSeq:NP_056299.1 RefSeq:NP_997053.1 UniGene:Hs.20013
ProteinModelPortal:O95926 IntAct:O95926 STRING:O95926
PhosphoSite:O95926 PRIDE:O95926 DNASU:25949 Ensembl:ENST00000236273
Ensembl:ENST00000354361 GeneID:25949 KEGG:hsa:25949 UCSC:uc001bjt.1
GeneCards:GC01M025548 HGNC:HGNC:19824 HPA:HPA018265 MIM:607090
neXtProt:NX_O95926 PharmGKB:PA142670853 InParanoid:O95926
PhylomeDB:O95926 GenomeRNAi:25949 NextBio:47546 Bgee:O95926
CleanEx:HS_SYF2 Genevestigator:O95926 GermOnline:ENSG00000117614
Uniprot:O95926
Length = 243
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 83/216 (38%), Positives = 124/216 (57%)
Query: 96 RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--ESRGISKQKW-LEERKRKIGKLLD 152
R +K EL L NEARK N +V E KR++ P E++ ++ +W L+E ++K K
Sbjct: 33 RLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKK-ARLEWELKEEEKK--KECA 89
Query: 153 ANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGWDVFNQKALYDAYKKRTKNVEVDLEE 211
A G D K +L+ P G+ + L Y + TK ++ D+E
Sbjct: 90 ARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQ-YHRLTKQIKPDMET 148
Query: 212 YNKMKEAD-PEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKD 270
Y +++E EF+ ++SL +G +E+ IDRMV +L+ + EKR+ +SRRR ++++ D
Sbjct: 149 YERLREKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVIDLEKQIEKRDKYSRRRPYNDDAD 207
Query: 271 IDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
ID IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 208 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243
>ZFIN|ZDB-GENE-040801-170 [details] [associations]
symbol:syf2 "SYF2 homolog, RNA splicing factor (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] ZFIN:ZDB-GENE-040801-170
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 KO:K12868
eggNOG:NOG147890 GeneTree:ENSGT00390000017845 HOGENOM:HOG000190170
OMA:AYNDDAD InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231
EMBL:BC076298 EMBL:BC091556 IPI:IPI00486427 RefSeq:NP_001003437.1
UniGene:Dr.75653 STRING:Q6DGP2 PRIDE:Q6DGP2
Ensembl:ENSDART00000099950 GeneID:445043 KEGG:dre:445043 CTD:25949
HOVERGEN:HBG080129 InParanoid:Q6DGP2 OrthoDB:EOG4X0MT8
NextBio:20831806 ArrayExpress:Q6DGP2 Bgee:Q6DGP2 Uniprot:Q6DGP2
Length = 238
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 78/216 (36%), Positives = 122/216 (56%)
Query: 96 RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--ESRG--ISKQKWLEERKRKIGKLL 151
R +K EL K NEARK N +V E KR++ P E++ + + ++++K++ +
Sbjct: 28 RLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKARLEYELLVDQKKKECAER- 86
Query: 152 DANGLDMTKAFMLDTQXXXXXXXXXXXXDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEE 211
D K + + +P P G+ + + L Y++ TK ++ D+E
Sbjct: 87 -GEDYDRVKLLEISAEDAERWERKKKKRNPDP-GFSGYAEAQLRQ-YQRLTKQIKPDMEN 143
Query: 212 YNKMKE-ADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKD 270
Y K KE +F+ ++SL YG S+D I+RMV +++ + EKR +SRRR ++++ D
Sbjct: 144 YEKQKEECGEDFHPTSNSLIYGTHVP-SKDSINRMVDDVEKQIEKRAKYSRRRAYNDDAD 202
Query: 271 IDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
ID IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 203 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238
>DICTYBASE|DDB_G0284573 [details] [associations]
symbol:syf2 "putative pre-mRNA-splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0284573 GenomeReviews:CM000153_GR EMBL:AAFI02000066
KO:K12868 eggNOG:NOG147890 InterPro:IPR013260 PANTHER:PTHR13264
Pfam:PF08231 RefSeq:XP_638510.1 EnsemblProtists:DDB0233593
GeneID:8624660 KEGG:ddi:DDB_G0284573 InParanoid:Q54PG4 OMA:NINAMKQ
Uniprot:Q54PG4
Length = 293
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 75/241 (31%), Positives = 124/241 (51%)
Query: 75 DSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGI 134
+S+ND ++ LT Q+K++ELR K+ + ++V E KR+ +
Sbjct: 58 ESEND---DKHFIDPLANLTPAQRKVYELRKKLETTKSVIYKSVVDEHKRIHQGAQDEIE 114
Query: 135 SKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAPFGWD---VFNQ 191
K++ +E+ ++ + + GLD K L Q D ++
Sbjct: 115 EKKRLYKEKIKQEEEEMKKQGLDPQKE-RLKNQIAEEIKPNKKEKKKDSIVKDKSNTYSD 173
Query: 192 KALYDAYKKRTKNVEV--DLEEYNKM-KEADPEFYRDA---SSLQYGKSPKISEDKIDRM 245
+ +Y++YKKR K +E + E + K+ D + D+ + +YGKS +I D I+ M
Sbjct: 174 EHVYNSYKKRVKEMEKFHNSEHFKKVVSNEDVKESGDSINNNKYEYGKSIEIPRDNINAM 233
Query: 246 VKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTA 305
+EL +E R SF +R+ F EE+DI+ IN+ N FN+K+ RA+ KYT+E + NLERGTA
Sbjct: 234 KQELLKNQENRRSF-KRKSFKEEEDINYINEENRLFNQKVSRAYDKYTVETRQNLERGTA 292
Query: 306 L 306
L
Sbjct: 293 L 293
>FB|FBgn0033556 [details] [associations]
symbol:CG12343 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] EMBL:AE013599 GO:GO:0022008
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 KO:K12868
eggNOG:NOG147890 GeneTree:ENSGT00390000017845 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 EMBL:BT022631
RefSeq:NP_610617.1 UniGene:Dm.30963 STRING:Q9V5Q4 PaxDb:Q9V5Q4
PRIDE:Q9V5Q4 EnsemblMetazoa:FBtr0088247 GeneID:36143
KEGG:dme:Dmel_CG12343 UCSC:CG12343-RA FlyBase:FBgn0033556
InParanoid:Q9V5Q4 OrthoDB:EOG4VX0N3 PhylomeDB:Q9V5Q4
GenomeRNAi:36143 NextBio:797065 Bgee:Q9V5Q4 GermOnline:CG12343
Uniprot:Q9V5Q4
Length = 226
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 68/222 (30%), Positives = 116/222 (52%)
Query: 92 KLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQ-KWL--EERKRKIG 148
KL R+ +L +L K EAR N +VAE R + P+ +Q +W+ +++ R
Sbjct: 10 KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQAEWILADDKARAEA 69
Query: 149 KLLDANGLDMTKAFMLDTQXXXXXXXXXXXX--DPAPFGWDVFNQKALYDAYKKRTKNVE 206
+ A G D + +L+ D G+ + + Y + K++
Sbjct: 70 Q---AAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTARQ-YNRLVKSMP 125
Query: 207 V-DLEEYNKMKEA-DPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRR 264
DLE+Y + KE FY A + + ++ K + I++MV +L+ + E+R +SRRR
Sbjct: 126 ARDLEKYERQKEELGDAFYGGAHTTLHSRT-KDTPGAINKMVTDLEQQIERRKKYSRRRI 184
Query: 265 FHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
++++ D+D IN+RN FNKK++R + ++T EIK NLERGTA+
Sbjct: 185 YNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226
>UNIPROTKB|Q28XK6 [details] [associations]
symbol:Syf2 "Pre-mRNA-splicing factor Syf2" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0071004 "U2-type
prespliceosome" evidence=ISS] [GO:0071006 "U2-type catalytic step 1
spliceosome" evidence=ISS] [GO:0071007 "U2-type catalytic step 2
spliceosome" evidence=ISS] [GO:0071008 "U2-type post-mRNA release
spliceosomal complex" evidence=ISS] EMBL:CM000071
GenomeReviews:CM000071_GR GO:GO:0000398 GO:GO:0071006 GO:GO:0071007
GO:GO:0071008 GO:GO:0071004 KO:K12868 eggNOG:NOG147890 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 OrthoDB:EOG4VX0N3
RefSeq:XP_001361731.1 GeneID:4805311 KEGG:dpo:Dpse_GA11568
FlyBase:FBgn0071619 InParanoid:Q28XK6 Uniprot:Q28XK6
Length = 226
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 69/222 (31%), Positives = 114/222 (51%)
Query: 92 KLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQ-KWL--EERKRKIG 148
KL R+ +L +L K EAR N +VAE R + P+ +Q +WL +++ R+
Sbjct: 10 KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQAEWLLADDKAREDA 69
Query: 149 KLLDANGLDMTKAFMLDTQXXXXXXXXXXXX--DPAPFGWDVFNQKALYDAYKKRTKNVE 206
+ A G D + +L+ D G+ + + Y + K +
Sbjct: 70 Q---AAGKDYERLKLLEVSAIDAERIEKKKKRKDNPDLGFSTYEAQTARQ-YSRLVKGMP 125
Query: 207 V-DLEEYNKMK-EADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRR 264
D+E+Y K K E FY + + + K + I++MV +L + E+R +SRRR
Sbjct: 126 ARDMEKYEKQKAELGEAFYGGPHTTLHALT-KDTPAAINKMVNDLDQQIERRKKYSRRRI 184
Query: 265 FHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
++++ D+D IN+RN FNKK++R +G++T EIK NLERGTA+
Sbjct: 185 YNDDADVDFINERNSKFNKKLDRFYGEHTAEIKQNLERGTAI 226
>WB|WBGene00019402 [details] [associations]
symbol:K04G7.11 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0016477 "cell migration" evidence=IMP]
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0010171
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
EMBL:FO080149 KO:K12868 PIR:A88500 PIR:H88499 RefSeq:NP_498566.3
STRING:Q09385 PaxDb:Q09385 EnsemblMetazoa:K04G7.11.1
EnsemblMetazoa:K04G7.11.2 GeneID:176003 KEGG:cel:CELE_K04G7.11
CTD:176003 WormBase:K04G7.11 eggNOG:NOG147890
GeneTree:ENSGT00390000017845 HOGENOM:HOG000190170 InParanoid:Q09385
OMA:AYNDDAD NextBio:890694 InterPro:IPR013260 PANTHER:PTHR13264
Pfam:PF08231 Uniprot:Q09385
Length = 234
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 64/243 (26%), Positives = 121/243 (49%)
Query: 70 LEAGSDSDNDKPAEEDVE-GDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPP 128
+ + S S + P+ + DF + R + L +LR + ARK N +V E +R + P
Sbjct: 1 MSSESQSSSSGPSSSGSKMKDFNQ---RFRDLHKLRQR---ARKENHEQVVEEDRRSKLP 54
Query: 129 QESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXX---DPAPFG 185
+ ++ + ++ + K + GLD + L+ +P G
Sbjct: 55 KNHEAKKERDQWQVKELQDRKAAEDKGLDYERVRSLEMSADVTEKLEQKRKRKKNPDQ-G 113
Query: 186 WDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEA--DPEFYRDASSLQYGKSPKISEDKID 243
+ + L + + T ++ DL+ Y KM+E +FY A +L +G + +D
Sbjct: 114 FTSYEDMTLRQ-HTRLTAALDPDLDSYKKMRECVGGEQFYPTADTLIHGNHYPTTA-AMD 171
Query: 244 RMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERG 303
++ K++ + ++R + RRR + + ID IN++N+ FNKK+++ +GKYT +IK++LERG
Sbjct: 172 KLTKDVHGQVKRREQYHRRRLYDPDAPIDYINEKNKKFNKKLDKYYGKYTEDIKDDLERG 231
Query: 304 TAL 306
TA+
Sbjct: 232 TAI 234
>POMBASE|SPBC3E7.13c [details] [associations]
symbol:syf2 "splicing factor, SYF2 family (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0007127 "meiosis I" evidence=IEP]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0045292 "mRNA
cis splicing, via spliceosome" evidence=ISS] PomBase:SPBC3E7.13c
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007127
GO:GO:0030437 GO:GO:0045292 KO:K12868 eggNOG:NOG147890
HOGENOM:HOG000190170 OMA:AYNDDAD InterPro:IPR013260
PANTHER:PTHR13264 Pfam:PF08231 OrthoDB:EOG4ZGSP5 PIR:T40387
RefSeq:NP_596100.1 IntAct:O59733 STRING:O59733
EnsemblFungi:SPBC3E7.13c.1 GeneID:2540611 KEGG:spo:SPBC3E7.13c
NextBio:20801736 Uniprot:O59733
Length = 229
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 61/221 (27%), Positives = 111/221 (50%)
Query: 96 RQKKLFELRLKMNEARKANQTAMVAEKKRM--EPPQESRGISKQKWLEERKRKIGKLLDA 153
R +KL ++R +M ++ N+ +V E RM +P E R K+ EE KI +
Sbjct: 11 RVEKLKKIREQMRKSSHENRKEVVQEHSRMRIDPALERRLERKRMEAEEELAKIETEEEG 70
Query: 154 NGLDMTKAF--MLDTQXXXXXXXXXXXXDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEE 211
+ +A+ ++ + ++ +A D Y + ++++ D E+
Sbjct: 71 GDFERRRAWDWTIEESEKWDQRLRKKKQTIQNVAFSDYHSQASKD-YNRGIRDLKPDYEK 129
Query: 212 YNKMKEADPE------FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRF 265
Y+K K+ + Y +A L + S K ++ ++R+V+ +K ++++R ++RR
Sbjct: 130 YDKDKKEEKSKSRSVALYDEAERLDW-VSNKPDKEHVERLVESIKKQDQRRLKNTKRRGT 188
Query: 266 HEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
EE I IN+RN FN K++R + KYT +IK +LERGTAL
Sbjct: 189 DEEDHITFINERNRKFNLKLQRFYSKYTKDIKEDLERGTAL 229
>ASPGD|ASPL0000050771 [details] [associations]
symbol:AN1861 species:162425 "Emericella nidulans"
[GO:0030437 "ascospore formation" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] GO:GO:0008380 EMBL:BN001307 GO:GO:0006397
GO:GO:0005681 EMBL:AACD01000029 KO:K12868 eggNOG:NOG147890
HOGENOM:HOG000190170 InterPro:IPR013260 PANTHER:PTHR13264
Pfam:PF08231 RefSeq:XP_659465.1 STRING:Q5BC69
EnsemblFungi:CADANIAT00008515 GeneID:2875390 KEGG:ani:AN1861.2
OMA:PECINSS OrthoDB:EOG4ZGSP5 Uniprot:Q5BC69
Length = 297
Score = 152 (58.6 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 38/115 (33%), Positives = 66/115 (57%)
Query: 197 AYKKRTKNVEVDLEEYN--KMKEADPE--FYRDASSLQYGKSPKISEDKIDRMVKELKDR 252
A +K + ++++ E N +M D FY A ++ + +S K +D++V +L+
Sbjct: 184 AIEKAAASGDLEIVETNDGEMIAVDKNGTFYSTADTIGFTES-KPDRAAVDKLVADLRKA 242
Query: 253 EEKRNSFSRRRRFHEEK-DIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
EE R R RR +E D+ IN++N+ FN+K+ R + KYT EI+++ ERGT +
Sbjct: 243 EEVRLKKRRDRRGGDEDGDVTYINEKNKQFNQKLARFYNKYTTEIRDSFERGTMI 297
Score = 71 (30.1 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 44/186 (23%), Positives = 68/186 (36%)
Query: 36 VEDEREAVQASGSSGQSNTLASDVAEDLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTG 95
+E+ RE + ++ Q+ + ASDVAED + K + G D+ + + F L
Sbjct: 12 LEESREG-EGKSTTSQTESNASDVAED---PSTKEQTGDKEDSAAARARERKERFKALQA 67
Query: 96 RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANG 155
R K E LK +TA ++ +P S K + K +A G
Sbjct: 68 RAKSATERNLK--------ETAAETQRLATDPSLLSSLSRKHAFASHNLLKADT--EAAG 117
Query: 156 LDMTKAFMLDTQXXXXXXXXXXXXDPAPFGWDVFNQKALYDA---YKKRTKNVEVDLEEY 212
D + D DV Q DA YK++ + ++ DLE Y
Sbjct: 118 EDFERKRAWDWTVDESEKWDRRMEKKQRHRDDVAFQDYTQDARKVYKRQLREMKPDLEGY 177
Query: 213 NKMKEA 218
K A
Sbjct: 178 ENEKMA 183
>UNIPROTKB|Q521C0 [details] [associations]
symbol:SYF2 "Pre-mRNA-splicing factor SYF2" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] GO:GO:0008380 EMBL:CM001233 GO:GO:0006397
GO:GO:0005681 KO:K12868 eggNOG:NOG147890 InterPro:IPR013260
PANTHER:PTHR13264 Pfam:PF08231 OrthoDB:EOG4ZGSP5
RefSeq:XP_003712719.1 STRING:Q521C0 EnsemblFungi:MGG_05180T0
GeneID:2675357 KEGG:mgr:MGG_05180 Uniprot:Q521C0
Length = 291
Score = 152 (58.6 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 222 FYRDASSLQYGKSPKISEDKIDRMVKELKDREE--KRNSFSRRRRFHEEKDIDSINDRNE 279
FY S + K+ K ++ IDR+V ++K E+ + +R + E+ D+ IND+N+
Sbjct: 206 FYSTTDSTDFAKN-KPDKEAIDRLVNDMKKAEDVAAKKRKARMAKNGEDDDVTYINDKNK 264
Query: 280 HFNKKIERAFGKYTLEIKNNLERGTAL 306
FN+K+ R + KYT EI+ + ERGT +
Sbjct: 265 QFNQKLARFYNKYTAEIRESFERGTMI 291
Score = 50 (22.7 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 198 YKKRTKNVEVDLEEYNKMKEA 218
YK++ KN+ D+E Y K K A
Sbjct: 156 YKRQLKNMPPDMERYAKDKMA 176
>ASPGD|ASPL0000058158 [details] [associations]
symbol:AN0074 species:162425 "Emericella nidulans"
[GO:0044732 "mitotic spindle pole body" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0034399 "nuclear periphery"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0000280 "nuclear division" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] EMBL:BN001308 OMA:DIVPHTK
InterPro:IPR008610 PANTHER:PTHR13028 Pfam:PF05890
EnsemblFungi:CADANIAT00002678 Uniprot:C8VR04
Length = 376
Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
Identities = 52/230 (22%), Positives = 92/230 (40%)
Query: 38 DEREAVQASGSSGQSNTLASDVAEDLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQ 97
+E E + S ++ + T +D A+D + E D D ++ EED+ R+
Sbjct: 63 EEEEDKEESTNAAEGETSQNDAADDAEDD----EEAEDEDEEEEEEEDIPLSDLSDDERE 118
Query: 98 KKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANG-L 156
+ RL +N N TA++A KR+ S+ L + + DAN L
Sbjct: 119 DVIPHQRLTIN-----NSTAILASTKRISFISHLTPFSEHNSLISKAEDEMDIPDANDDL 173
Query: 157 DMTKAFMLDTQXXXXXXXXXXXXDPAPFG--WDVFNQKALYDAYKKRTKNVEVDLEEYNK 214
+ +F Q + PF D F + D + + K D E +K
Sbjct: 174 NRELSFYKTAQTAAYTARKLLKKEGVPFTRPGDYFAEMVKSDEHMGKIKKKLYD-EAASK 232
Query: 215 MKEADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRR 264
A+ RD ++GK +++ K+ + KE K+ E+ N ++R+
Sbjct: 233 KAAAEARKQRDLK--KFGKQVQVA--KLQQRAKEKKEAIERINDLKKKRK 278
>TAIR|locus:2115245 [details] [associations]
symbol:AT4G36520 species:3702 "Arabidopsis thaliana"
[GO:0031072 "heat shock protein binding" evidence=IEA]
InterPro:IPR001623 Pfam:PF00226 EMBL:CP002687 Gene3D:1.10.287.110
SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS50076 IPI:IPI01020461
RefSeq:NP_195370.5 UniGene:At.31322 ProteinModelPortal:F4JPR4
SMR:F4JPR4 PRIDE:F4JPR4 EnsemblPlants:AT4G36520.1 GeneID:829804
KEGG:ath:AT4G36520 OMA:QYRGEEA ArrayExpress:F4JPR4 Uniprot:F4JPR4
Length = 1422
Score = 123 (48.4 bits), Expect = 0.00033, P = 0.00033
Identities = 65/267 (24%), Positives = 117/267 (43%)
Query: 27 KIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAEDLHHENPKLEAGSDSDNDKPAEEDV 86
+I EA++R D RE V + + A+ E E EA ++N++ A E
Sbjct: 637 RIKEARLREENDRRERVAVEKAENEKRLKAA--LEQEEKERKIKEAREKAENERRAVEAR 694
Query: 87 EGDFTKLTGRQKKLFELRLKMNEA-RKANQTAMVAEKKRMEPPQESRGISKQKWLEERKR 145
E + + K+ EL L++ EA K + + E +E +E R I + + EE +R
Sbjct: 695 EK--AEQERKMKEQQELELQLKEAFEKEEENRRMREAFALEQEKERR-IKEAREKEENER 751
Query: 146 KIGKLLDANGLDMT-KAFMLDTQXXXXXXXXXXXXDPAPFGWDVF----NQKALYDAYKK 200
+I + + L+ KA + + + +V N++ L +A ++
Sbjct: 752 RIKEAREKAELEQRLKATLEQEEKERQIKERQEREENERRAKEVLEQAENERKLKEALEQ 811
Query: 201 RTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISED----KIDRMVKELKDREEKR 256
+ +N E L+E + KE + + R+A L+ K ++ E +I+R +KE ++EE R
Sbjct: 812 K-EN-ERRLKE-TREKEENKKKLREAIELEE-KEKRLIEAFERAEIERRLKEDLEQEEMR 867
Query: 257 ---NSFSRRRRFHEEKDIDSINDRNEH 280
R R H E N+R +H
Sbjct: 868 MRLQEAKERERLHRENQEHQENERKQH 894
>DICTYBASE|DDB_G0288069 [details] [associations]
symbol:DDB_G0288069 species:44689 "Dictyostelium
discoideum" [GO:0005615 "extracellular space" evidence=IDA]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA]
InterPro:IPR012317 PROSITE:PS51059 dictyBase:DDB_G0288069
GO:GO:0005615 eggNOG:NOG12793 EMBL:AAFI02000109 GO:GO:0003950
RefSeq:XP_636882.1 EnsemblProtists:DDB0187762 GeneID:8626438
KEGG:ddi:DDB_G0288069 InParanoid:Q54JG8 OMA:FRDSAVE Uniprot:Q54JG8
Length = 1082
Score = 91 (37.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 32/110 (29%), Positives = 58/110 (52%)
Query: 37 EDEREAVQASGSSGQSNTLASDVAEDLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGR 96
+D+ +AV + S S++ SD +++ + +N K S+ + K A++ ++ T +
Sbjct: 429 DDDDDAVDSDDSDASSDS--SDSSDEDNGKNKK----SNLKSSKSAKQ-IDTSSTLSSEN 481
Query: 97 QKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRK 146
KK E K E ++ Q +AEKKR+E ++ K+K EE+KRK
Sbjct: 482 SKKQKEDDEK--EKQRKQQEEAIAEKKRLEDEEKRIANEKKKQEEEKKRK 529
Score = 76 (31.8 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 25/104 (24%), Positives = 54/104 (51%)
Query: 199 KKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNS 258
+++ K + + E+ K KE + ++ ++ K E++ +++ ++LK++EE++
Sbjct: 774 QQKEKEEKEEKEKEEKEKEEKEKEEKEKERIELEKQKAEEEEEAEKL-RKLKEQEEEQKL 832
Query: 259 FSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER 302
+R R E+K ID +R E N IE+ + + K LE+
Sbjct: 833 ELKRIR-DEQKKIDDEKERIEKEN--IEKEKQRIENQEKERLEK 873
>UNIPROTKB|E1BVB9 [details] [associations]
symbol:CALD1 "Caldesmon" species:9031 "Gallus gallus"
[GO:0003779 "actin binding" evidence=IEA] [GO:0005516 "calmodulin
binding" evidence=IEA] [GO:0006936 "muscle contraction"
evidence=IEA] [GO:0017022 "myosin binding" evidence=IEA]
InterPro:IPR006017 PRINTS:PR01076 GO:GO:0006936 InterPro:IPR006018
Pfam:PF02029 GeneTree:ENSGT00700000104480 EMBL:AADN02006542
EMBL:AADN02006543 EMBL:AADN02006544 EMBL:AADN02006545
EMBL:AADN02006546 IPI:IPI00680861 Ensembl:ENSGALT00000021344
ArrayExpress:E1BVB9 Uniprot:E1BVB9
Length = 755
Score = 117 (46.2 bits), Expect = 0.00072, P = 0.00072
Identities = 65/302 (21%), Positives = 117/302 (38%)
Query: 11 INASNPYHECVD--YCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAEDLHHENP 68
+NA N + ++ A+ + E ERE ++A AE+
Sbjct: 204 VNAENDTNAMLEGEQSITDAADKEKEEAEKEREKLEAEEKERLKAEEEKKAAEEKQKAEE 263
Query: 69 KLEAGSDSDNDKPAEED---VEGDFTKLTGRQKKLFEL-RLKMNEARKANQTAMVAEKKR 124
+ +A + + K EE E + K +K E R K E RKA + AE++R
Sbjct: 264 EKKAAEERERAKAEEEKRAAEERERAKAEEERKAAEERERAKAEEERKAAEERAKAEEER 323
Query: 125 MEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAPF 184
+ ++ ++K EER + + A + KA + A
Sbjct: 324 KAAEERAKAEEERKAAEERAKAEKERKAAEERERAKA----------EEEKRAAEEKARL 373
Query: 185 GWDVFNQKALYDAYKKRTKNVEVDL-EEYNKMKEADPEFYRDASSLQYGKSPKISEDKI- 242
+ +K + K + + + +L + + KEA E ++ SL P +D++
Sbjct: 374 EAEKLKEKKKMEEKKAQEEKAQANLLRKQEEDKEAKVEAKKE--SLPEKLQPTSKKDQVK 431
Query: 243 DRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER 302
D KE +EE ++ + R+R E+K + + K E AFG+ L+ N E
Sbjct: 432 DNKDKEKAPKEEMKSVWDRKRGVPEQKAQNGERELTTPKLKSTENAFGRSNLKGAANAEA 491
Query: 303 GT 304
G+
Sbjct: 492 GS 493
>DICTYBASE|DDB_G0285911 [details] [associations]
symbol:DDB_G0285911 "LIM-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
dictyBase:DDB_G0285911 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 EMBL:AAFI02000082 eggNOG:NOG257706
RefSeq:XP_637999.1 ProteinModelPortal:Q54MJ1
EnsemblProtists:DDB0233145 GeneID:8625350 KEGG:ddi:DDB_G0285911
InParanoid:Q54MJ1 OMA:CDSKFRE Uniprot:Q54MJ1
Length = 1061
Score = 99 (39.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 202 TKNVEVDLEEYNKMKEADPEFYRDASSLQYG-KSPKISEDKIDRMVKELKDREE-KRNSF 259
TK+ LEEY K +E +A L+ K KI E + R+ ++L++ EE KR
Sbjct: 960 TKSTISSLEEYKKKREERKRLQEEAEKLEEELKKKKIQEREKQRLERKLQEEEEEKREEE 1019
Query: 260 SRRRRFHE-EKDIDSINDRNEHFNKKIER 287
SRR+R E +++ + + E ++I+R
Sbjct: 1020 SRRKRTEERQREREKLKKELELEEERIKR 1048
Score = 65 (27.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 28/123 (22%), Positives = 52/123 (42%)
Query: 26 RKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAEDLHHENPKLEAGSDS--DNDKPAE 83
RK E ++ + +RE + ++ L + E EN + E +N++
Sbjct: 373 RKEFE-RIEKEKRDREQTRLENERLENERLKKEKLEKERLENERFEKERQERIENERLEN 431
Query: 84 EDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEER 143
E E + + ++K E + N+ R A + EK+R E + R K+K +ER
Sbjct: 432 ERFERERKERLEKEK--IEKEERENQLRLAKEKEEKEEKERQERQLKERLERKEKLEKER 489
Query: 144 KRK 146
K +
Sbjct: 490 KER 492
>UNIPROTKB|F1NT51 [details] [associations]
symbol:CALD1 "Caldesmon" species:9031 "Gallus gallus"
[GO:0003779 "actin binding" evidence=IEA] [GO:0005516 "calmodulin
binding" evidence=IEA] [GO:0006936 "muscle contraction"
evidence=IEA] [GO:0017022 "myosin binding" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0030478 "actin cap"
evidence=IEA] InterPro:IPR006017 PRINTS:PR01076 GO:GO:0005886
GO:GO:0006936 GO:GO:0030478 InterPro:IPR006018 Pfam:PF02029
IPI:IPI00572834 GeneTree:ENSGT00700000104480 EMBL:AADN02006542
EMBL:AADN02006543 EMBL:AADN02006544 EMBL:AADN02006545
EMBL:AADN02006546 Ensembl:ENSGALT00000021345 OMA:WRQDGEE
ArrayExpress:F1NT51 Uniprot:F1NT51
Length = 771
Score = 117 (46.2 bits), Expect = 0.00074, P = 0.00074
Identities = 65/302 (21%), Positives = 117/302 (38%)
Query: 11 INASNPYHECVD--YCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAEDLHHENP 68
+NA N + ++ A+ + E ERE ++A AE+
Sbjct: 221 VNAENDTNAMLEGEQSITDAADKEKEEAEKEREKLEAEEKERLKAEEEKKAAEEKQKAEE 280
Query: 69 KLEAGSDSDNDKPAEED---VEGDFTKLTGRQKKLFEL-RLKMNEARKANQTAMVAEKKR 124
+ +A + + K EE E + K +K E R K E RKA + AE++R
Sbjct: 281 EKKAAEERERAKAEEEKRAAEERERAKAEEERKAAEERERAKAEEERKAAEERAKAEEER 340
Query: 125 MEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAPF 184
+ ++ ++K EER + + A + KA + A
Sbjct: 341 KAAEERAKAEEERKAAEERAKAEKERKAAEERERAKA----------EEEKRAAEEKARL 390
Query: 185 GWDVFNQKALYDAYKKRTKNVEVDL-EEYNKMKEADPEFYRDASSLQYGKSPKISEDKI- 242
+ +K + K + + + +L + + KEA E ++ SL P +D++
Sbjct: 391 EAEKLKEKKKMEEKKAQEEKAQANLLRKQEEDKEAKVEAKKE--SLPEKLQPTSKKDQVK 448
Query: 243 DRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER 302
D KE +EE ++ + R+R E+K + + K E AFG+ L+ N E
Sbjct: 449 DNKDKEKAPKEEMKSVWDRKRGVPEQKAQNGERELTTPKLKSTENAFGRSNLKGAANAEA 508
Query: 303 GT 304
G+
Sbjct: 509 GS 510
>UNIPROTKB|P12957 [details] [associations]
symbol:CALD1 "Caldesmon" species:9031 "Gallus gallus"
[GO:0006936 "muscle contraction" evidence=IEA] [GO:0017022 "myosin
binding" evidence=IEA] [GO:0003779 "actin binding" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0030016 "myofibril" evidence=IEA]
InterPro:IPR006017 PRINTS:PR01076 GO:GO:0005856 GO:GO:0030016
GO:GO:0006936 InterPro:IPR006018 Pfam:PF02029 EMBL:J04968
EMBL:D17648 EMBL:M28417 EMBL:M60620 EMBL:M59762 EMBL:D17552
EMBL:M26684 IPI:IPI00572834 IPI:IPI00577689 IPI:IPI00583069
PIR:A33430 PIR:A39038 RefSeq:NP_989489.1 UniGene:Gga.4988
DisProt:DP00120 ProteinModelPortal:P12957 STRING:P12957
GeneID:373965 KEGG:gga:373965 CTD:800 eggNOG:NOG127381
HOGENOM:HOG000013012 HOVERGEN:HBG050785 InParanoid:P12957 KO:K12327
NextBio:20813495 Uniprot:P12957
Length = 771
Score = 117 (46.2 bits), Expect = 0.00074, P = 0.00074
Identities = 65/302 (21%), Positives = 117/302 (38%)
Query: 11 INASNPYHECVD--YCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAEDLHHENP 68
+NA N + ++ A+ + E ERE ++A AE+
Sbjct: 221 VNAENDTNAMLEGEQSITDAADKEKEEAEKEREKLEAEEKERLKAEEEKKAAEEKQKAEE 280
Query: 69 KLEAGSDSDNDKPAEED---VEGDFTKLTGRQKKLFEL-RLKMNEARKANQTAMVAEKKR 124
+ +A + + K EE E + K +K E R K E RKA + AE++R
Sbjct: 281 EKKAAEERERAKAEEEKRAAEERERAKAEEERKAAEERERAKAEEERKAAEERAKAEEER 340
Query: 125 MEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAPF 184
+ ++ ++K EER + + A + KA + A
Sbjct: 341 KAAEERAKAEEERKAAEERAKAEKERKAAEERERAKA----------EEEKRAAEEKARL 390
Query: 185 GWDVFNQKALYDAYKKRTKNVEVDL-EEYNKMKEADPEFYRDASSLQYGKSPKISEDKI- 242
+ +K + K + + + +L + + KEA E ++ SL P +D++
Sbjct: 391 EAEKLKEKKKMEEKKAQEEKAQANLLRKQEEDKEAKVEAKKE--SLPEKLQPTSKKDQVK 448
Query: 243 DRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER 302
D KE +EE ++ + R+R E+K + + K E AFG+ L+ N E
Sbjct: 449 DNKDKEKAPKEEMKSVWDRKRGVPEQKAQNGERELTTPKLKSTENAFGRSNLKGAANAEA 508
Query: 303 GT 304
G+
Sbjct: 509 GS 510
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.364 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 308 296 0.00093 115 3 11 23 0.47 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 586 (62 KB)
Total size of DFA: 207 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.49u 0.13s 36.62t Elapsed: 00:00:02
Total cpu time: 36.49u 0.13s 36.62t Elapsed: 00:00:02
Start: Fri May 10 09:33:13 2013 End: Fri May 10 09:33:15 2013