BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021740
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 29 AEAKVRMVEDEREAVQASGSSGQSNTLASDV-AEDLHHENPKLEAGSDSDNDKPAEEDVE 87
A A++ + RE +QA+ + G+S + +V A+DL +L G DS K D++
Sbjct: 256 ALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLR-GMDSSTPK-LTSDIQ 313
Query: 88 GDFTKLTG 95
G T L G
Sbjct: 314 GHATNLEG 321
>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease
Length = 977
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 46/87 (52%), Gaps = 22/87 (25%)
Query: 65 HENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEK-K 123
++NP +EAG D DN++ + + T ++ +Q++L + AM+A++ K
Sbjct: 318 NDNPDIEAGDDDDNNESS-----SNTTVISDKQRRLLA------------KDAMIAQRSK 360
Query: 124 RMEPPQESRGISKQKWLEERKRKIGKL 150
+++P + I ++ W ++ +G+L
Sbjct: 361 KIQPTAKVVYIQRRSW----RQYVGQL 383
>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 1003
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 46/87 (52%), Gaps = 22/87 (25%)
Query: 65 HENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEK-K 123
++NP +EAG D DN++ + + T ++ +Q++L + AM+A++ K
Sbjct: 344 NDNPDIEAGDDDDNNESS-----SNTTVISDKQRRLLA------------KDAMIAQRSK 386
Query: 124 RMEPPQESRGISKQKWLEERKRKIGKL 150
+++P + I ++ W ++ +G+L
Sbjct: 387 KIQPTAKVVYIQRRSW----RQYVGQL 409
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 228 SLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIER 287
SLQ K K +ED++D+ + LKD +EK + ++ E D+ S+N R + F ++++R
Sbjct: 45 SLQ--KKLKATEDELDKYSEALKDAQEKLE-LAEKKATDAEADVASLNRRIQLFEEELDR 101
Query: 288 A 288
A
Sbjct: 102 A 102
>pdb|2PX2|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Monoclinic Form 1)
pdb|2PX2|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Monoclinic Form 1)
pdb|2PX4|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Monoclinic Form 2)
pdb|2PX5|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Orthorhombic Crystal Form)
pdb|2PX5|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Orthorhombic Crystal Form)
pdb|2PXA|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-o Methyltransferase Domain In Complex With Sah
And Gtpg
pdb|2PXA|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-o Methyltransferase Domain In Complex With Sah
And Gtpg
pdb|2PXC|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-o Methyltransferase Domain In Complex With Sam
And Gtpa
Length = 269
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 131 SRGISKQKWLEERK--RKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPA------ 182
SRG +K +WL ER+ + IGK++D ++ T P
Sbjct: 56 SRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPML 115
Query: 183 --PFGWDVFNQKALYDAYKK 200
+GW++ K+ D + K
Sbjct: 116 MQSYGWNIVTMKSGVDVFYK 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,767,036
Number of Sequences: 62578
Number of extensions: 341452
Number of successful extensions: 873
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 36
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)