BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021740
(308 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28G05|SYF2_XENTR Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2
SV=1
Length = 249
Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 132/238 (55%), Gaps = 6/238 (2%)
Query: 72 AGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQES 131
AG S + P + K R +K EL LK NEARK N +V E KR + P
Sbjct: 15 AGVSSKAESPPASTEDLAAQKREARLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNW 74
Query: 132 RGISKQKWLEERKRKIGKLLDANGLDMTKAFMLD--TQEAAEAKYKKWEKDPAPFGWDVF 189
+ E ++ + + ANG+D +A +L+ ++A + KK K+P G+ +
Sbjct: 75 EARKARLEWELKEEEKKRECAANGVDYERAKLLEISAEDAERWERKKKRKNP-DLGFSDY 133
Query: 190 NQKALYDAYKKRTKNVEVDLEEYNKMKEADPE-FYRDASSLQYGKSPKISEDKIDRMVKE 248
L Y++ TK ++ D+EEY K+ E FY + SL +G + S+ IDRMV +
Sbjct: 134 AAAQLRQ-YQRLTKQIKPDMEEYEMEKQKQGEMFYPTSESLYHG-THIPSQSGIDRMVTD 191
Query: 249 LKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
L+ + EKR +SRRR ++++ DID IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 192 LEKQIEKREKYSRRRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249
>sp|Q6DGP2|SYF2_DANRE Pre-mRNA-splicing factor syf2 OS=Danio rerio GN=syf2 PE=2 SV=1
Length = 238
Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 127/216 (58%), Gaps = 10/216 (4%)
Query: 96 RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRG----ISKQKWLEERKRKIGKLL 151
R +K EL K NEARK N +V E KR++ P + + ++++K++ +
Sbjct: 28 RLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKARLEYELLVDQKKKECAER- 86
Query: 152 DANGLDMTKAFMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEE 211
D K + ++A + KK +++P P G+ + + L Y++ TK ++ D+E
Sbjct: 87 -GEDYDRVKLLEISAEDAERWERKKKKRNPDP-GFSGYAEAQLRQ-YQRLTKQIKPDMEN 143
Query: 212 YNKMKE-ADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKD 270
Y K KE +F+ ++SL YG + S+D I+RMV +++ + EKR +SRRR ++++ D
Sbjct: 144 YEKQKEECGEDFHPTSNSLIYG-THVPSKDSINRMVDDVEKQIEKRAKYSRRRAYNDDAD 202
Query: 271 IDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
ID IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 203 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238
>sp|Q4QRB2|SYF2_RAT Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus GN=Syf2 PE=2
SV=1
Length = 242
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Query: 96 RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANG 155
R +K EL LK NEARK N +V E KR++ P + E ++ + K A G
Sbjct: 32 RLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKKECAARG 91
Query: 156 LDMTKAFMLDTQEAAEAKYKKWEKDPAP-FGWDVFNQKALYDAYKKRTKNVEVDLEEYNK 214
D K +L+ ++++ +K P G+ + L Y + TK ++ D+E Y +
Sbjct: 92 EDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQ-YHRLTKQIKPDMESYER 150
Query: 215 MKEADPE-FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDS 273
+E E F+ ++SL +G SE+ IDRMV +L+ + EKR+ +SRRR ++++ DID
Sbjct: 151 QREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDLEKQIEKRDKYSRRRPYNDDADIDY 209
Query: 274 INDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 210 INERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>sp|Q9D198|SYF2_MOUSE Pre-mRNA-splicing factor SYF2 OS=Mus musculus GN=Syf2 PE=2 SV=1
Length = 242
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Query: 96 RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANG 155
R +K EL LK NEARK N +V E KR++ P + E ++ + K A G
Sbjct: 32 RLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKKECAARG 91
Query: 156 LDMTKAFMLDTQEAAEAKYKKWEKDPAP-FGWDVFNQKALYDAYKKRTKNVEVDLEEYNK 214
D K +L+ ++++ +K P G+ + L Y + TK ++ D+E Y +
Sbjct: 92 EDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQ-YHRLTKQIKPDMESYER 150
Query: 215 MKEADPE-FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDS 273
+E E F+ ++SL +G SE+ IDRMV +L+ + EKR+ +SRRR ++++ DID
Sbjct: 151 QREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDLEKQIEKRDKYSRRRPYNDDADIDY 209
Query: 274 INDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 210 INERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>sp|Q8AVQ6|SYF2_XENLA Pre-mRNA-splicing factor syf2 OS=Xenopus laevis GN=syf2 PE=2 SV=1
Length = 240
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 133/223 (59%), Gaps = 16/223 (7%)
Query: 92 KLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--ESRGISKQKWL---EERKRK 146
K R +K EL LK NEARK N +V E KR + P E+R ++ +W EE+KR+
Sbjct: 26 KREARLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNWEARK-ARLEWELKNEEKKRE 84
Query: 147 IGKLLDANGLDMTKAFMLD--TQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKN 204
ANG+D +A +L+ ++A + KK K+P G+ + L Y++ TK
Sbjct: 85 CA----ANGVDFERAKLLEISAEDAERWERKKKRKNP-DLGFSDYAAAQLRQ-YQRLTKQ 138
Query: 205 VEVDLEEYNKMKEADPE-FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRR 263
++ D+EEY KE E FY + SL +G + S+ IDRMV +L+ + EKR +SRRR
Sbjct: 139 IKPDMEEYEMEKEKQGELFYPTSDSLYHG-THVPSQSGIDRMVTDLEKQIEKREKYSRRR 197
Query: 264 RFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
++++ DID IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 198 AYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 240
>sp|Q6DV01|SYF2_GECJA Pre-mRNA-splicing factor syf2 OS=Gecko japonicus GN=syf2 PE=2 SV=1
Length = 249
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 123/211 (58%), Gaps = 4/211 (1%)
Query: 98 KKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLD 157
+K EL LK NEARK N +V E KR++ P + E + + K A G D
Sbjct: 41 RKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKSRLEWELKVEEKKKECVAKGED 100
Query: 158 MTKAFMLD-TQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMK 216
+ +L+ + E AE +K +K G+ + A Y++ T+ ++ DLE+Y K++
Sbjct: 101 YERVKLLEISAEDAERFERKRKKRNPDLGFSDY-AAAQMRQYQRLTRQIKPDLEKYAKLR 159
Query: 217 E-ADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSIN 275
E + EFY ++SL +G E +D+MV++L+ + +KR +SRRR ++++ DID IN
Sbjct: 160 EESGEEFYPTSNSLLHGTHVPCKEG-VDKMVEDLEKQIQKREKYSRRRPYNDDADIDYIN 218
Query: 276 DRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 219 ERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249
>sp|O95926|SYF2_HUMAN Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=SYF2 PE=1 SV=1
Length = 243
Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 124/214 (57%), Gaps = 6/214 (2%)
Query: 96 RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANG 155
R +K EL L NEARK N +V E KR++ P + E ++ + K A G
Sbjct: 33 RLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELKEEEKKKECAARG 92
Query: 156 LDMTKAFMLD--TQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYN 213
D K +L+ ++A + KK K+P G+ + L Y + TK ++ D+E Y
Sbjct: 93 EDYEKVKLLEISAEDAERWERKKKRKNP-DLGFSDYAAAQLRQ-YHRLTKQIKPDMETYE 150
Query: 214 KMKEADPE-FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDID 272
+++E E F+ ++SL +G +E+ IDRMV +L+ + EKR+ +SRRR ++++ DID
Sbjct: 151 RLREKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVIDLEKQIEKRDKYSRRRPYNDDADID 209
Query: 273 SINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
IN+RN FNKK ER +GKYT EIK NLERGTA+
Sbjct: 210 YINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243
>sp|Q9V5Q4|SYF2_DROME Pre-mRNA-splicing factor Syf2 OS=Drosophila melanogaster GN=Syf2
PE=2 SV=1
Length = 226
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 24/228 (10%)
Query: 92 KLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLL 151
KL R+ +L +L K EAR N +VAE R + P+ W E RKR+ +L
Sbjct: 10 KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKN--------W-EARKRQAEWIL 60
Query: 152 ---------DANGLDMTKAFMLDTQ--EAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKK 200
A G D + +L+ +A + KK KD G+ + + Y +
Sbjct: 61 ADDKARAEAQAAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTARQ-YNR 119
Query: 201 RTKNVEV-DLEEYNKMKE-ADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNS 258
K++ DLE+Y + KE FY A + + ++ K + I++MV +L+ + E+R
Sbjct: 120 LVKSMPARDLEKYERQKEELGDAFYGGAHTTLHSRT-KDTPGAINKMVTDLEQQIERRKK 178
Query: 259 FSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
+SRRR ++++ D+D IN+RN FNKK++R + ++T EIK NLERGTA+
Sbjct: 179 YSRRRIYNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226
>sp|Q28XK6|SYF2_DROPS Pre-mRNA-splicing factor Syf2 OS=Drosophila pseudoobscura
pseudoobscura GN=Syf2 PE=3 SV=1
Length = 226
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 92 KLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLL 151
KL R+ +L +L K EAR N +VAE R + P+ W E RKR+ LL
Sbjct: 10 KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPK--------NW-EARKRQAEWLL 60
Query: 152 ---------DANGLDMTKAFMLDTQ--EAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKK 200
A G D + +L+ +A + KK KD G+ + + Y +
Sbjct: 61 ADDKAREDAQAAGKDYERLKLLEVSAIDAERIEKKKKRKDNPDLGFSTYEAQTARQ-YSR 119
Query: 201 RTKNVEV-DLEEYNKMKEADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSF 259
K + D+E+Y K K E + K + I++MV +L + E+R +
Sbjct: 120 LVKGMPARDMEKYEKQKAELGEAFYGGPHTTLHALTKDTPAAINKMVNDLDQQIERRKKY 179
Query: 260 SRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
SRRR ++++ D+D IN+RN FNKK++R +G++T EIK NLERGTA+
Sbjct: 180 SRRRIYNDDADVDFINERNSKFNKKLDRFYGEHTAEIKQNLERGTAI 226
>sp|Q612R3|SYF2_CAEBR Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis briggsae GN=syf-2
PE=3 SV=2
Length = 233
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 115/208 (55%), Gaps = 20/208 (9%)
Query: 110 ARKANQTAMVAEKKRMEPP-----QESRGISKQKWLEERKRKIGKLLD---ANGLDMTKA 161
ARK N +V E +R + P ++ R + K L++RK K LD L+M+
Sbjct: 35 ARKENHAQVVEEDRRKKLPKNFEAKKERDQWQVKELQDRKEAEDKGLDYERVRSLEMS-- 92
Query: 162 FMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKE--AD 219
D E E K +K +K+P G+ + L + + T ++ DLE Y KMKE
Sbjct: 93 --ADVTEKLEQK-RKRKKNPDQ-GFASYEDMTLR-QHTRLTAALDPDLESYKKMKECVGG 147
Query: 220 PEFYRDASSLQYGKS-PKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRN 278
+FY A +L +G P S +DR+VK++ + ++R + RRR + + ID IN++N
Sbjct: 148 DQFYPTADTLIHGNHYPTTS--AMDRLVKDVHGQVKRREQYHRRRLYDPDAPIDYINEKN 205
Query: 279 EHFNKKIERAFGKYTLEIKNNLERGTAL 306
+ FNKK+++ +GKYT +IK++LERGTA+
Sbjct: 206 KKFNKKLDKYYGKYTEDIKDDLERGTAI 233
>sp|Q4WPM6|SYF2_ASPFU Pre-mRNA-splicing factor syf2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf2 PE=3
SV=2
Length = 300
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 222 FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHF 281
FY A ++ + ++ K +D++V +L+ EE R R RR EE D+ IN++N+ F
Sbjct: 217 FYSTADTIGFTEN-KPDRAGVDKLVADLRKAEEVRLKKRRERRGDEEPDVTYINEKNKQF 275
Query: 282 NKKIERAFGKYTLEIKNNLERGTAL 306
N+K+ R + KYT EI+++ ERGT +
Sbjct: 276 NQKLARFYNKYTTEIRDSFERGTMI 300
>sp|Q09385|SYF2_CAEEL Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis elegans GN=syf-2
PE=3 SV=3
Length = 234
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 110/203 (54%), Gaps = 10/203 (4%)
Query: 110 ARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFML----D 165
ARK N +V E +R + P+ ++ + ++ + K + GLD + L D
Sbjct: 36 ARKENHEQVVEEDRRSKLPKNHEAKKERDQWQVKELQDRKAAEDKGLDYERVRSLEMSAD 95
Query: 166 TQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKE--ADPEFY 223
E E K +K +K+P G+ + L + + T ++ DL+ Y KM+E +FY
Sbjct: 96 VTEKLEQK-RKRKKNPDQ-GFTSYEDMTLR-QHTRLTAALDPDLDSYKKMRECVGGEQFY 152
Query: 224 RDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNK 283
A +L +G + +D++ K++ + ++R + RRR + + ID IN++N+ FNK
Sbjct: 153 PTADTLIHGNHYPTTA-AMDKLTKDVHGQVKRREQYHRRRLYDPDAPIDYINEKNKKFNK 211
Query: 284 KIERAFGKYTLEIKNNLERGTAL 306
K+++ +GKYT +IK++LERGTA+
Sbjct: 212 KLDKYYGKYTEDIKDDLERGTAI 234
>sp|O59733|SYF2_SCHPO Pre-mRNA-splicing factor syf2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=syf2 PE=1 SV=1
Length = 229
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 222 FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHF 281
Y +A L + S K ++ ++R+V+ +K ++++R ++RR EE I IN+RN F
Sbjct: 146 LYDEAERLDWV-SNKPDKEHVERLVESIKKQDQRRLKNTKRRGTDEEDHITFINERNRKF 204
Query: 282 NKKIERAFGKYTLEIKNNLERGTAL 306
N K++R + KYT +IK +LERGTAL
Sbjct: 205 NLKLQRFYSKYTKDIKEDLERGTAL 229
>sp|Q5BC69|SYF2_EMENI Pre-mRNA-splicing factor syf2 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=syf2
PE=3 SV=1
Length = 297
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 222 FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSR-RRRFHEEKDIDSINDRNEH 280
FY A ++ + +S K +D++V +L+ EE R R RR E+ D+ IN++N+
Sbjct: 213 FYSTADTIGFTES-KPDRAAVDKLVADLRKAEEVRLKKRRDRRGGDEDGDVTYINEKNKQ 271
Query: 281 FNKKIERAFGKYTLEIKNNLERGTAL 306
FN+K+ R + KYT EI+++ ERGT +
Sbjct: 272 FNQKLARFYNKYTTEIRDSFERGTMI 297
>sp|Q521C0|SYF2_MAGO7 Pre-mRNA-splicing factor SYF2 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SYF2 PE=3 SV=2
Length = 291
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 222 FYRDASSLQYGKSPKISEDKIDRMVKELKDREE--KRNSFSRRRRFHEEKDIDSINDRNE 279
FY S + K+ K ++ IDR+V ++K E+ + +R + E+ D+ IND+N+
Sbjct: 206 FYSTTDSTDFAKN-KPDKEAIDRLVNDMKKAEDVAAKKRKARMAKNGEDDDVTYINDKNK 264
Query: 280 HFNKKIERAFGKYTLEIKNNLERGTAL 306
FN+K+ R + KYT EI+ + ERGT +
Sbjct: 265 QFNQKLARFYNKYTAEIRESFERGTMI 291
>sp|Q7RZK5|SYF2_NEUCR Pre-mRNA-splicing factor syf-2 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=syf-2 PE=3 SV=1
Length = 339
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 219 DPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFH----EEKDIDSI 274
D F+ A S Q+ + K + +DR+V +++ EE S +RR ++ D+ I
Sbjct: 251 DGTFFSTADSTQFAQH-KPDKAAVDRLVADMRKAEEA--SLKKRRERMANNGDDADVTYI 307
Query: 275 NDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
N++N+ FN+K+ R + KYT EI+++ ERGT +
Sbjct: 308 NEKNKQFNQKLSRFYNKYTAEIRDSFERGTMV 339
>sp|Q6CFW4|SYF2_YARLI Pre-mRNA-splicing factor SYF2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=SYF2 PE=3 SV=1
Length = 195
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Query: 197 AYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKR 256
AY+K + + DLE Y K KE S + +P+ +DR+V L +++R
Sbjct: 94 AYEKDLASFKPDLETYEKEKETG---LHHTPSFNHKPTPEA----LDRLVNGLTKGDKQR 146
Query: 257 NSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
R++ +++ I+D+N+ FN+K+ R + KYT EI++N ERGTAL
Sbjct: 147 MK-RRKQAGADDQHATYISDKNKQFNEKLNRQYDKYTKEIRDNFERGTAL 195
>sp|Q6BVE0|SYF2_DEBHA Pre-mRNA-splicing factor SYF2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SYF2 PE=3 SV=2
Length = 231
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 176 KWEKDP------APFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSL 229
KWEK G+ FN+ A AY K N++VD E Y++ K A + + +
Sbjct: 108 KWEKKTKQKGRNQKSGFQNFNKMA-EQAYNKELSNLKVDKETYDQQKNAINK-NKSGNQS 165
Query: 230 QYGK----SPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDS-INDRNEHFNKK 284
Q K S K S +R+V+ ++ E RRR +E D++S IND+N+ FN K
Sbjct: 166 QMSKILPVSSKPSAADTNRLVRNIE--EANNRRMKRRRNKDDENDVNSYINDKNKQFNLK 223
Query: 285 IERAF 289
+ R +
Sbjct: 224 LNRQY 228
>sp|Q6ZQQ6|WDR87_HUMAN WD repeat-containing protein 87 OS=Homo sapiens GN=WDR87 PE=1 SV=3
Length = 2873
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 26 RKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAEDLHHENPKL 70
RK+A+A V++ +D+RE QA G Q + E L E KL
Sbjct: 1614 RKLAQAYVKITQDDREMAQAEGKFAQKEETLAQRGEKLSQEAEKL 1658
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,974,181
Number of Sequences: 539616
Number of extensions: 4941513
Number of successful extensions: 24291
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 494
Number of HSP's that attempted gapping in prelim test: 23544
Number of HSP's gapped (non-prelim): 1072
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)