Query 021740
Match_columns 308
No_of_seqs 155 out of 229
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 08:36:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jyp_A Aragonite protein AP7; 40.8 5.8 0.0002 25.3 0.0 7 15-21 7-13 (36)
2 3twe_A Alpha4H; unknown functi 36.6 22 0.00076 21.3 2.1 20 89-108 6-25 (27)
3 4fc8_A Transcription protein R 22.6 32 0.0011 30.9 1.6 31 6-36 74-127 (219)
4 4g3b_A Alpha4F3D; alpha helix, 19.9 40 0.0014 20.0 1.1 21 87-107 4-24 (26)
5 1imu_A Hypothetical protein HI 9.5 2.9E+02 0.01 21.0 3.9 24 236-259 68-91 (107)
6 3key_A Protein STN1; butterfly 9.4 1.1E+02 0.0038 26.7 1.4 16 15-30 90-105 (185)
7 1mqm_B Hemagglutinin HA2 chain 8.9 94 0.0032 27.6 0.8 17 15-31 139-155 (221)
8 3fxd_A Protein ICMQ; helix bun 8.8 1.5E+02 0.0051 21.1 1.7 44 237-302 5-48 (57)
9 2wrg_I Hemagglutinin HA2 chain 8.8 88 0.003 27.8 0.5 18 15-32 139-156 (222)
10 2ap3_A Conserved hypothetical 8.0 1.5E+02 0.005 26.1 1.6 20 274-297 167-186 (199)
No 1
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=40.79 E-value=5.8 Score=25.26 Aligned_cols=7 Identities=57% Similarity=1.625 Sum_probs=5.8
Q ss_pred CchhhhH
Q 021740 15 NPYHECV 21 (308)
Q Consensus 15 np~h~c~ 21 (308)
-|||||.
T Consensus 7 rpfheca 13 (36)
T 2jyp_A 7 RPFHECA 13 (36)
T ss_dssp TTTTCCS
T ss_pred Cccchhe
Confidence 5999995
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=36.61 E-value=22 Score=21.27 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=15.7
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 021740 89 DFTKLTGRQKKLFELRLKMN 108 (308)
Q Consensus 89 ~~~~m~~r~~RLkeLk~K~n 108 (308)
-+..+++.++||+.|+.|+.
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35568888999999998864
No 3
>4fc8_A Transcription protein RTR1; zinc finger; 2.50A {Kluyveromyces lactis}
Probab=22.58 E-value=32 Score=30.85 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=20.1
Q ss_pred CCCCCCCCC-------------------Cchh----hhHHHHHHHHHhhhhhhh
Q 021740 6 VHPDCINAS-------------------NPYH----ECVDYCFRKIAEAKVRMV 36 (308)
Q Consensus 6 ~~~~c~n~~-------------------np~h----~c~~~c~~~~~~~~~~~~ 36 (308)
|+|-|+|.. +||- -||.+|++.=.--++.+.
T Consensus 74 GYPLC~~~~~~~~~ky~Is~~tk~~~~nkvyd~l~~fCS~~Cy~aS~f~~~QLs 127 (219)
T 4fc8_A 74 GYPLCSKSQARVRDPFADVQMTNFLRQNNPYAYLTEYCTKAHFRCSQFYQFQLS 127 (219)
T ss_dssp SSTTCCSCCSCC-------------------CGGGTCSSHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcccccCCCceeeeccccccccCcHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 899999862 3553 599999987555555444
No 4
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=19.89 E-value=40 Score=20.00 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=16.2
Q ss_pred CCcccchHHHHHHHHHHHHHH
Q 021740 87 EGDFTKLTGRQKKLFELRLKM 107 (308)
Q Consensus 87 ~~~~~~m~~r~~RLkeLk~K~ 107 (308)
+..+..+++.++||+..+.|+
T Consensus 4 de~ykeled~qerlrk~rkkl 24 (26)
T 4g3b_A 4 DEXYKELEDXQERLRKXRKKL 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 345677888899998888775
No 5
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=9.45 E-value=2.9e+02 Score=20.98 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Q 021740 236 KISEDKIDRMVKELKDREEKRNSF 259 (308)
Q Consensus 236 kpseeaVdrLV~dL~k~~~kR~kf 259 (308)
.+=..|||.++..|..|..+.+..
T Consensus 68 ~d~y~AiD~a~dkLerqLrk~k~K 91 (107)
T 1imu_A 68 DDMYKAINEVEEKLERQLNKLQHK 91 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344799999999999999887764
No 6
>3key_A Protein STN1; butterfly WING-shaped, helix, chromosomal protein, phosphoprotein, telomere; 2.10A {Saccharomyces cerevisiae} PDB: 3k10_A
Probab=9.40 E-value=1.1e+02 Score=26.69 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.9
Q ss_pred CchhhhHHHHHHHHHh
Q 021740 15 NPYHECVDYCFRKIAE 30 (308)
Q Consensus 15 np~h~c~~~c~~~~~~ 30 (308)
.|-|-|..||.++|.-
T Consensus 90 ~~Lk~L~~Yc~kRi~~ 105 (185)
T 3key_A 90 LPLKNLFEYAEKRISV 105 (185)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5889999999999874
No 7
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Probab=8.86 E-value=94 Score=27.57 Aligned_cols=17 Identities=29% Similarity=0.776 Sum_probs=15.4
Q ss_pred CchhhhHHHHHHHHHhh
Q 021740 15 NPYHECVDYCFRKIAEA 31 (308)
Q Consensus 15 np~h~c~~~c~~~~~~~ 31 (308)
..||.|-.-|...|..|
T Consensus 139 E~~HKCdn~CmesirNg 155 (221)
T 1mqm_B 139 KIYHKCDNACIESIRNG 155 (221)
T ss_dssp EESSCCCHHHHHHHHTT
T ss_pred ehhhccCHHHHHHHHcC
Confidence 36999999999999987
No 8
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=8.85 E-value=1.5e+02 Score=21.13 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccccchHHHHHHHHHHhhhhhHHHHhhhhc
Q 021740 237 ISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER 302 (308)
Q Consensus 237 pseeaVdrLV~dL~k~~~kR~kfsRRR~~~dd~dvdYINERNk~FNkKLeR~Y~KyT~EIk~NLER 302 (308)
.|++-.+.+.+-|...++. .+-..-+| =|.-||--.|||+||-+
T Consensus 5 lt~eq~~aILkaLdeaIe~----------GPWe~SNF------------LRvIGKnL~eIRd~F~~ 48 (57)
T 3fxd_A 5 LSDEQKETILKALNDAIEK----------GPWDKSNF------------LRVIGKKLIAIRDRFLK 48 (57)
T ss_dssp CCHHHHHHHHHHHHHHHHH----------SCTTSCHH------------HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHc----------CCchHHHH------------HHHHHHhHHHHHHHHHH
Confidence 4666677777777777662 11111122 37788999999999864
No 9
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=8.83 E-value=88 Score=27.83 Aligned_cols=18 Identities=28% Similarity=0.756 Sum_probs=15.8
Q ss_pred CchhhhHHHHHHHHHhhh
Q 021740 15 NPYHECVDYCFRKIAEAK 32 (308)
Q Consensus 15 np~h~c~~~c~~~~~~~~ 32 (308)
..||.|-+-|...|..|-
T Consensus 139 e~~HKCd~~CmesIrNgT 156 (222)
T 2wrg_I 139 EFYHKCDDACMESVRNGT 156 (222)
T ss_dssp EESSCCCHHHHHHHTTTC
T ss_pred hhhhhccHHHHHHHHcCC
Confidence 379999999999998873
No 10
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=8.02 E-value=1.5e+02 Score=26.13 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=12.6
Q ss_pred cccchHHHHHHHHHHhhhhhHHHH
Q 021740 274 INDRNEHFNKKIERAFGKYTLEIK 297 (308)
Q Consensus 274 INERNk~FNkKLeR~Y~KyT~EIk 297 (308)
||+-++.|| ..|++||.+..
T Consensus 167 vN~~y~~~~----~~FN~yTk~yN 186 (199)
T 2ap3_A 167 IEQNYKKLK----EVSDKYTKVLN 186 (199)
T ss_dssp HHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHH
Confidence 455556666 66777777654
Done!