Query 021740
Match_columns 308
No_of_seqs 155 out of 229
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 08:36:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021740.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021740hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xu2r_ g.24.1.2 (R:) Tumor ne 5.4 1.5E+02 0.011 17.4 1.7 18 7-25 18-35 (36)
2 d1l4sa_ d.204.1.1 (A:) Ribosom 5.2 2.6E+02 0.019 19.4 3.5 23 237-259 68-90 (112)
3 d2fbqa1 a.4.1.9 (A:2-80) Trans 4.3 1.9E+02 0.014 18.6 1.9 36 273-308 44-79 (79)
4 d1jc6a_ g.8.1.1 (A:) Venom bas 4.3 1.6E+02 0.012 19.0 1.6 22 6-27 36-60 (65)
5 d1dkca_ g.3.4.2 (A:) Antifunga 4.1 11 0.00078 23.1 -4.4 23 9-31 9-31 (38)
6 d1ghha_ d.57.1.1 (A:) DNA dama 4.1 2.6E+02 0.019 19.3 2.5 27 231-257 7-33 (81)
7 d2d8za1 g.39.1.3 (A:8-32) Four 4.0 78 0.0057 17.6 -0.3 9 12-20 15-24 (26)
8 d2a6sa1 d.298.1.1 (A:1-83) Tox 4.0 2.2E+02 0.016 19.5 2.2 27 282-308 20-46 (83)
9 d3bc8a1 c.67.1.9 (A:23-467) Se 3.9 3.8E+02 0.028 22.2 4.2 22 235-256 418-439 (445)
10 d2cura2 g.39.1.3 (A:8-32) Four 3.8 86 0.0063 17.4 -0.2 9 12-20 15-24 (26)
No 1
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.36 E-value=1.5e+02 Score=17.44 Aligned_cols=18 Identities=28% Similarity=0.759 Sum_probs=12.6
Q ss_pred CCCCCCCCCchhhhHHHHH
Q 021740 7 HPDCINASNPYHECVDYCF 25 (308)
Q Consensus 7 ~~~c~n~~np~h~c~~~c~ 25 (308)
|-.|.+.+-| ..|..||-
T Consensus 18 ~lrcs~~~pp-l~cq~yc~ 35 (36)
T d1xu2r_ 18 QLRCSSNTPP-LTCQRYCN 35 (36)
T ss_dssp GGTTTSSSCC-GGGHHHHH
T ss_pred eeecCCCCCc-hhhhhhcc
Confidence 4468766655 57999994
No 2
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Escherichia coli [TaxId: 562]}
Probab=5.22 E-value=2.6e+02 Score=19.39 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Q 021740 237 ISEDKIDRMVKELKDREEKRNSF 259 (308)
Q Consensus 237 pseeaVdrLV~dL~k~~~kR~kf 259 (308)
+=-.+||.++..|..|..+.+..
T Consensus 68 d~y~Aid~a~~klerQLrk~K~K 90 (112)
T d1l4sa_ 68 DMYTAINELINKLERQLNKLQHK 90 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999876653
No 3
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.31 E-value=1.9e+02 Score=18.58 Aligned_cols=36 Identities=17% Similarity=0.416 Sum_probs=28.7
Q ss_pred ccccchHHHHHHHHHHhhhhhHHHHhhhhccCCCCC
Q 021740 273 SINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 308 (308)
Q Consensus 273 YINERNk~FNkKLeR~Y~KyT~EIk~NLERGTAl~~ 308 (308)
|.-.|.-.|-.-+.+.|..+...+.+-|++..+-|+
T Consensus 44 ~F~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pE 79 (79)
T d2fbqa1 44 HFGSKKALIQAVFSRFLGPFCASLEKELDRRQAKPE 79 (79)
T ss_dssp HTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcC
Confidence 666777888888888888888888888887777664
No 4
>d1jc6a_ g.8.1.1 (A:) Venom basic protease inhibitor IX (VIIIb) {Banded krait (Bungarus fasciatus) [TaxId: 8613]}
Probab=4.27 E-value=1.6e+02 Score=19.01 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=17.4
Q ss_pred CCCCCCCCCCchh---hhHHHHHHH
Q 021740 6 VHPDCINASNPYH---ECVDYCFRK 27 (308)
Q Consensus 6 ~~~~c~n~~np~h---~c~~~c~~~ 27 (308)
.+.+|-...|.|. +|..+|...
T Consensus 36 ~y~GC~gN~N~F~t~~eC~~~C~~~ 60 (65)
T d1jc6a_ 36 NYGGCGGNANNFKTIDECQRTCAAK 60 (65)
T ss_dssp CCCSSCCCSSCBSSHHHHHHHTSCC
T ss_pred EcCCccCCccCcCCHHHHHHHhccc
Confidence 4678987789998 999999643
No 5
>d1dkca_ g.3.4.2 (A:) Antifungal peptide PAFP-S {Pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=4.13 E-value=11 Score=23.05 Aligned_cols=23 Identities=26% Similarity=0.713 Sum_probs=13.9
Q ss_pred CCCCCCCchhhhHHHHHHHHHhh
Q 021740 9 DCINASNPYHECVDYCFRKIAEA 31 (308)
Q Consensus 9 ~c~n~~np~h~c~~~c~~~~~~~ 31 (308)
.|....-|=--||.|||+.-+++
T Consensus 9 rcn~~~gppyccs~~cl~~~gq~ 31 (38)
T d1dkca_ 9 RCNASAGPPYCCSSYCFQIAGQS 31 (38)
T ss_dssp EECTTSCCCCCSSSEEEEETTTT
T ss_pred eecccCCCCceechhhhccCCCc
Confidence 35444444446999998754443
No 6
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=4.07 E-value=2.6e+02 Score=19.30 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=21.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021740 231 YGKSPKISEDKIDRMVKELKDREEKRN 257 (308)
Q Consensus 231 ~g~~~kpseeaVdrLV~dL~k~~~kR~ 257 (308)
|.+..+.+.-+++.|-++|.+++..++
T Consensus 7 ~dK~~~lp~ga~~aL~~EL~kRl~~~f 33 (81)
T d1ghha_ 7 IAKTSPLPAGAIDALAGELSRRIQYAF 33 (81)
T ss_dssp EETTSCCCTTHHHHHHHHHHHHHHHHC
T ss_pred eecccCCCchHHHHHHHHHHHHHHhhC
Confidence 344456678999999999999988776
No 7
>d2d8za1 g.39.1.3 (A:8-32) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.04 E-value=78 Score=17.63 Aligned_cols=9 Identities=44% Similarity=1.173 Sum_probs=6.4
Q ss_pred CCCCchh-hh
Q 021740 12 NASNPYH-EC 20 (308)
Q Consensus 12 n~~np~h-~c 20 (308)
+..-|+| ||
T Consensus 15 Y~~~PWH~eC 24 (26)
T d2d8za1 15 YREQPWHKEC 24 (26)
T ss_dssp SSSSEEETTT
T ss_pred ecCCcchhhh
Confidence 4557888 77
No 8
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=4.00 E-value=2.2e+02 Score=19.49 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=22.3
Q ss_pred HHHHHHHhhhhhHHHHhhhhccCCCCC
Q 021740 282 NKKIERAFGKYTLEIKNNLERGTALPD 308 (308)
Q Consensus 282 NkKLeR~Y~KyT~EIk~NLERGTAl~~ 308 (308)
|.++-+-..++..+|..|..-|+.-|+
T Consensus 20 d~k~~kkI~~ll~~i~~~p~~g~gkpE 46 (83)
T d2a6sa1 20 DKRIVKKINELIKDTRRTPFEGKGKPE 46 (83)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSTTCCE
T ss_pred CHHHHHHHHHHHHHHHhCcCCCCCCCc
Confidence 677777788899999999998887763
No 9
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.87 E-value=3.8e+02 Score=22.17 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 021740 235 PKISEDKIDRMVKELKDREEKR 256 (308)
Q Consensus 235 ~kpseeaVdrLV~dL~k~~~kR 256 (308)
.-.+++.||++|+.|++-.++=
T Consensus 418 ~~~T~eDID~~v~~L~kilk~~ 439 (445)
T d3bc8a1 418 IGMKMQDVDLFIKRLDKCLNIV 439 (445)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999987653
No 10
>d2cura2 g.39.1.3 (A:8-32) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.84 E-value=86 Score=17.45 Aligned_cols=9 Identities=33% Similarity=1.165 Sum_probs=6.0
Q ss_pred CCCCchh-hh
Q 021740 12 NASNPYH-EC 20 (308)
Q Consensus 12 n~~np~h-~c 20 (308)
+..-|+| ||
T Consensus 15 Y~~qPWH~eC 24 (26)
T d2cura2 15 YQDQPWHADC 24 (26)
T ss_dssp ETTEEECTTT
T ss_pred ecCCcchhhh
Confidence 3456888 77
Done!