BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021741
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 127/288 (44%), Gaps = 49/288 (17%)
Query: 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKM 65
+L ID + D +AK ++ + GF L NH +++EL+ +++ E + FF+ + +++
Sbjct: 3 KLETIDYRAAD---SAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEF 59
Query: 66 KLARKEHRGYTALCDEILDPSSTSE-------GDPKESFYIGPLEGTLSSMNQWPSLEIL 118
R+ H G+ P+S SE D KE +++ +P I
Sbjct: 60 XFNRETHDGFF--------PASISETAKGHTVKDIKEYYHV------------YPWGRIP 99
Query: 119 PTWRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAP-------MAFLRLLH 171
+ R+ + Y++K A D + ++ P LR+LH
Sbjct: 100 DSLRANILAYYEK---ANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILH 156
Query: 172 YPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIV 231
YP A+AH D +IT+L T PGLQV + + W DVP+ G +I+
Sbjct: 157 YPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGS----WLDVPSDFGNIII 212
Query: 232 NIGDMMERWTNCLFRSTLHRVMS-----SGQERYSAAFFLDPNGDCVV 274
NIGD ++ ++ F ST HRV++ + R S FL P+ V+
Sbjct: 213 NIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 134/316 (42%), Gaps = 26/316 (8%)
Query: 2 TEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQL 61
T A+ L + D A+ + + YGF L ++ +++ I + +K FF+L +
Sbjct: 4 TSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPV 63
Query: 62 EDKMKLA--RKEHRGYTALCDEILDPSSTSEGDPKESFYIG---PLEGTLSSM---NQWP 113
E K + A + RGY E D KE ++ G P + N WP
Sbjct: 64 ETKKQYAGVKGGARGYIPFGVETA--KGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWP 121
Query: 114 SLEILPTWRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYP 173
+ +P ++ + + + + G DFF+ + + LRLLHYP
Sbjct: 122 AE--IPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPT--VQDGNSVLRLLHYP 177
Query: 174 GELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNI 233
+ + A AH D ITLL GL+V ++ W + G L++NI
Sbjct: 178 P--IPKDATGVRAGAHGDINTITLLLGAEEGGLEV----LDRDGQWLPINPPPGCLVINI 231
Query: 234 GDMMERWTNCLFRSTLHRVMS-----SGQERYSAAFFLDPNGDCVVXXXXXXXXXXNPPK 288
GD +ER TN + ST+HRV++ G RYS FFL D + NP +
Sbjct: 232 GDXLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDR 291
Query: 289 FA-PIRSGDYIKERIR 303
+ I + +++++R+R
Sbjct: 292 YPESITADEFLQQRLR 307
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 141/307 (45%), Gaps = 20/307 (6%)
Query: 6 QLPVIDLSSPD------RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59
Q+P IDL + + R + + +++A +D+G +L+NHG+ +L+ ++ ++FFSL
Sbjct: 45 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 104
Query: 60 QLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILP 119
+E+K K A + G L +++ + + ++ F+ ++ WP P
Sbjct: 105 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK---TP 161
Query: 120 T--WRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYPGELV 177
+ +T EY L A + ++VG L+ + +++ +YP
Sbjct: 162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPK--C 219
Query: 178 SSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMM 237
+ G AH+D +T + + VPGLQ+ E W + +++++IGD +
Sbjct: 220 PQPELALGVEAHTDVSALTFILHNMVPGLQLFYEG-----KWVTAKCVPDSIVMHIGDTL 274
Query: 238 ERWTNCLFRSTLHRVMSSGQE-RYSAAFFLDPNGDCVVXX-XXXXXXXXNPPKFAPIRSG 295
E +N ++S LHR + + ++ R S A F +P D +V +P KF P
Sbjct: 275 EILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFA 334
Query: 296 DYIKERI 302
+I+ ++
Sbjct: 335 QHIEHKL 341
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 141/307 (45%), Gaps = 20/307 (6%)
Query: 6 QLPVIDLSSPD------RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59
Q+P IDL + + R + + +++A +D+G +L+NHG+ +L+ ++ ++FFSL
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 60 QLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILP 119
+E+K K A + G L +++ + + ++ F+ ++ WP P
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK---TP 162
Query: 120 T--WRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYPGELV 177
+ +T EY L A + ++VG L+ + +++ +YP
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPK--C 220
Query: 178 SSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMM 237
+ G AH+D +T + + VPGLQ+ E W + +++++IGD +
Sbjct: 221 PQPELALGVEAHTDVSALTFILHNMVPGLQLFYEG-----KWVTAKCVPDSIVMHIGDTL 275
Query: 238 ERWTNCLFRSTLHRVMSSGQE-RYSAAFFLDPNGDCVVXX-XXXXXXXXNPPKFAPIRSG 295
E +N ++S LHR + + ++ R S A F +P D +V +P KF P
Sbjct: 276 EILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFA 335
Query: 296 DYIKERI 302
+I+ ++
Sbjct: 336 QHIEHKL 342
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 139/307 (45%), Gaps = 20/307 (6%)
Query: 6 QLPVIDLSSPD------RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59
Q+P IDL + + R + + +++A +D+G +L+NHG+ +L ++ ++FFSL
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSL 105
Query: 60 QLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILP 119
+E+K K A + G L +++ + + ++ F+ ++ WP P
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK---TP 162
Query: 120 T--WRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYPGELV 177
+ +T EY L A + ++VG L+ + ++ +YP
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPK--C 220
Query: 178 SSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMM 237
+ G AH+D +T + + VPGLQ+ E W + +++ +IGD +
Sbjct: 221 PQPELALGVEAHTDVSALTFILHNXVPGLQLFYEG-----KWVTAKCVPDSIVXHIGDTL 275
Query: 238 ERWTNCLFRSTLHRVMSSGQE-RYSAAFFLDPNGDCVVXX-XXXXXXXXNPPKFAPIRSG 295
E +N ++S LHR + + ++ R S A F +P D +V +P KF P
Sbjct: 276 EILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFA 335
Query: 296 DYIKERI 302
+I+ ++
Sbjct: 336 QHIEHKL 342
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 124/277 (44%), Gaps = 28/277 (10%)
Query: 6 QLPVIDL---SSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLE 62
P+I L + +R +T + I+ AC ++GFF LVNHG+ E+ + +K + E
Sbjct: 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 63 DKMK--LARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPT 120
+ K +A K G A ++ D + +F++ L +S++++ P L+
Sbjct: 63 QRFKELVASKALEGVQA---------EVTDXDWESTFFLKHL--PISNISEVPDLD--EE 109
Query: 121 WRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVG-ALDAPMAFLRLLHYPGELVSS 179
+R + +++ + + + P ++ +YP
Sbjct: 110 YREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPP--CPK 167
Query: 180 NQEVCGASAHSDYGMITLL-ATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMME 238
+ G AH+D G I LL D V GLQ+ ++ W DVP + +++VN+GD +E
Sbjct: 168 PDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-----QWIDVPPXRHSIVVNLGDQLE 222
Query: 239 RWTNCLFRSTLHRVMSSGQ-ERYSAAFFLDPNGDCVV 274
TN ++S HRV++ R S A F +P D V+
Sbjct: 223 VITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVI 259
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 118/298 (39%), Gaps = 42/298 (14%)
Query: 7 LPVIDLS------SPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKF-FSL 59
+P ID+S ++ A+ I A D GFFY VNHG+ + +SQ ++K+F S+
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ---KTKEFHMSI 65
Query: 60 QLEDKMKLA----RKEHRGYTALCDEILDPSSTSEGDPKESF-YIGP----------LEG 104
E+K LA KEH+ + P + ESF Y+ P +
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKA----VESFCYLNPNFTPDHPRIQAKT 121
Query: 105 TLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPM 164
+N WP P ++ E Y+ V E+FF + D +
Sbjct: 122 PTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL 181
Query: 165 AFLRLLHYP--------GELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQP 216
A + L+ YP +++ H D +IT+L V LQV
Sbjct: 182 ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-----ETA 236
Query: 217 RLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSAAFFLDPNGDCVV 274
++D+ ++N G M TN +++ +HRV ER S FF++ D V+
Sbjct: 237 AGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVI 294
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 118/298 (39%), Gaps = 42/298 (14%)
Query: 7 LPVIDLS------SPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKF-FSL 59
+P ID+S ++ A+ I A D GFFY VNHG+ + +SQ ++K+F S+
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ---KTKEFHMSI 65
Query: 60 QLEDKMKLA----RKEHRGYTALCDEILDPSSTSEGDPKESF-YIGP----------LEG 104
E+K LA KEH+ + P + ESF Y+ P +
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKA----VESFCYLNPNFTPDHPRIQAKT 121
Query: 105 TLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPM 164
+N WP P ++ E Y+ V E+FF + D +
Sbjct: 122 PTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL 181
Query: 165 AFLRLLHYP--------GELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQP 216
A + L+ YP +++ H D +IT+L V LQV
Sbjct: 182 ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-----ETA 236
Query: 217 RLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSAAFFLDPNGDCVV 274
++D+ ++N G M TN +++ +HRV ER S FF++ D V+
Sbjct: 237 AGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVI 294
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 166 FLRLLHYPG--ELVSSNQEVCGASAHSDYGMITLL----ATDGVPGLQVCREKFNQPRLW 219
LR ++P E S+ ++ + H D M+TL+ +G LQ +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQA-----EVGGAF 212
Query: 220 EDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMS------SGQERYSAAFFLDPNGD 271
D+P A++V G + T ++ H V + +G R S+ FFL PN D
Sbjct: 213 TDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 166 FLRLLHYPG--ELVSSNQEVCGASAHSDYGMITLL----ATDGVPGLQVCREKFNQPRLW 219
LR ++P E S+ ++ + H D M+TL+ +G LQ +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQA-----EVGGAF 212
Query: 220 EDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMS------SGQERYSAAFFLDPNGD 271
D+P A++V G + T ++ H V + +G R S+ FFL PN D
Sbjct: 213 TDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 166 FLRLLHYPG--ELVSSNQEVCGASAHSDYGMITLL----ATDGVPGLQVCREKFNQPRLW 219
LR ++P E S+ ++ + H D M+TL+ +G LQ +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQA-----EVGGAF 212
Query: 220 EDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMS------SGQERYSAAFFLDPNGD 271
D+P A++V G + T ++ H V + +G R S+ FFL PN D
Sbjct: 213 TDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 166 FLRLLHYPG--ELVSSNQEVCGASAHSDYGMITLL----ATDGVPGLQVCREKFNQPRLW 219
LR ++P E S+ ++ + H D M+TL+ +G LQ +
Sbjct: 178 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQA-----EVGGAF 232
Query: 220 EDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMS------SGQERYSAAFFLDPNGD 271
D+P A++V G + T ++ H V + +G R S+ FFL PN D
Sbjct: 233 TDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 166 FLRLLHYPG--ELVSSNQEVCGASAHSDYGMITLL----ATDGVPGLQVCREKFNQPRLW 219
LR ++P E S+ ++ + H D M+TL+ +G LQ +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQA-----EVGGAF 212
Query: 220 EDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMS------SGQERYSAAFFLDPNGD 271
D+P A++V G + T ++ H V + +G + S+ FFL PN D
Sbjct: 213 TDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSQTSSVFFLRPNAD 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,729,203
Number of Sequences: 62578
Number of extensions: 324720
Number of successful extensions: 682
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 16
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)