Query 021742
Match_columns 308
No_of_seqs 72 out of 74
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14802 TMEM192: TMEM192 fami 100.0 2.7E-60 5.8E-65 436.2 21.7 196 38-233 23-236 (236)
2 KOG4552 Vitamin-D-receptor int 87.3 3.7 8E-05 39.1 8.6 77 218-296 16-95 (272)
3 PF14362 DUF4407: Domain of un 85.2 34 0.00074 32.3 15.8 60 36-101 14-75 (301)
4 PF15035 Rootletin: Ciliary ro 80.7 21 0.00046 32.4 10.3 93 210-304 13-138 (182)
5 PF14802 TMEM192: TMEM192 fami 78.2 22 0.00047 33.7 9.9 33 207-239 203-235 (236)
6 PF12325 TMF_TATA_bd: TATA ele 77.4 9.2 0.0002 32.7 6.6 80 217-296 20-103 (120)
7 KOG3088 Secretory carrier memb 75.7 4.4 9.6E-05 39.9 4.7 47 257-307 56-102 (313)
8 PF12711 Kinesin-relat_1: Kine 74.1 24 0.00053 28.9 7.9 63 217-300 21-85 (86)
9 PF15619 Lebercilin: Ciliary p 68.9 37 0.00081 31.1 8.8 63 232-300 45-107 (194)
10 COG2433 Uncharacterized conser 64.1 25 0.00054 37.9 7.5 90 207-299 423-512 (652)
11 KOG0288 WD40 repeat protein Ti 63.7 12 0.00026 38.6 5.0 55 250-304 16-70 (459)
12 PF12761 End3: Actin cytoskele 63.5 51 0.0011 30.8 8.6 78 217-295 100-194 (195)
13 TIGR02808 short_TIGR02808 cons 63.2 4.6 0.0001 29.1 1.4 23 46-68 19-41 (42)
14 PF04977 DivIC: Septum formati 62.8 13 0.00028 27.7 4.0 42 262-304 18-59 (80)
15 TIGR01010 BexC_CtrB_KpsE polys 62.7 30 0.00064 33.4 7.4 38 213-250 170-207 (362)
16 PRK10884 SH3 domain-containing 61.1 48 0.001 30.7 8.1 87 207-295 80-166 (206)
17 PF05961 Chordopox_A13L: Chord 57.7 17 0.00036 28.8 3.8 47 152-204 6-52 (68)
18 TIGR03007 pepcterm_ChnLen poly 57.5 68 0.0015 32.2 9.1 33 212-244 160-192 (498)
19 PF09574 DUF2374: Protein of 57.4 7.4 0.00016 28.1 1.7 22 46-67 19-40 (42)
20 TIGR01843 type_I_hlyD type I s 55.4 84 0.0018 30.0 9.0 11 243-253 189-199 (423)
21 PRK11637 AmiB activator; Provi 54.2 41 0.00088 33.5 6.9 40 253-292 88-127 (428)
22 PRK09039 hypothetical protein; 53.1 75 0.0016 31.3 8.4 25 213-237 67-91 (343)
23 KOG4403 Cell surface glycoprot 51.6 49 0.0011 34.8 7.0 72 216-287 238-328 (575)
24 TIGR01843 type_I_hlyD type I s 51.2 68 0.0015 30.7 7.7 33 262-294 152-184 (423)
25 PRK15396 murein lipoprotein; P 50.8 43 0.00093 26.9 5.2 33 262-294 33-65 (78)
26 PRK11637 AmiB activator; Provi 50.4 1.2E+02 0.0027 30.2 9.5 79 207-285 164-250 (428)
27 KOG1029 Endocytic adaptor prot 49.9 68 0.0015 36.0 8.1 25 213-237 430-454 (1118)
28 PF00669 Flagellin_N: Bacteria 48.9 1.5E+02 0.0032 24.3 9.7 77 218-294 10-88 (139)
29 PF09726 Macoilin: Transmembra 47.8 16 0.00035 39.5 3.1 51 74-134 119-169 (697)
30 PRK09841 cryptic autophosphory 46.5 1.1E+02 0.0023 32.9 9.0 36 214-249 268-303 (726)
31 PF14817 HAUS5: HAUS augmin-li 46.3 53 0.0011 35.4 6.6 78 208-294 32-112 (632)
32 TIGR01005 eps_transp_fam exopo 46.2 93 0.002 33.2 8.4 32 214-245 195-226 (754)
33 PHA03049 IMV membrane protein; 46.2 29 0.00062 27.5 3.5 46 153-204 7-52 (68)
34 PF08618 Opi1: Transcription f 44.7 51 0.0011 34.0 5.9 30 213-242 235-264 (427)
35 KOG4643 Uncharacterized coiled 44.3 90 0.002 35.8 8.1 91 214-304 126-227 (1195)
36 TIGR03495 phage_LysB phage lys 44.2 1.8E+02 0.0039 25.6 8.5 78 217-300 16-93 (135)
37 PF06818 Fez1: Fez1; InterPro 43.2 85 0.0018 29.4 6.7 70 228-297 32-102 (202)
38 PF15070 GOLGA2L5: Putative go 43.1 87 0.0019 33.6 7.6 76 221-302 161-236 (617)
39 PF09738 DUF2051: Double stran 42.4 1.7E+02 0.0038 28.7 9.0 84 207-291 135-249 (302)
40 PF05130 FlgN: FlgN protein; 42.0 1.1E+02 0.0025 24.3 6.6 32 273-304 82-113 (143)
41 PF11368 DUF3169: Protein of u 41.8 2.9E+02 0.0063 25.6 12.8 46 84-129 64-113 (248)
42 PF14182 YgaB: YgaB-like prote 41.7 60 0.0013 26.4 4.8 49 227-297 14-62 (79)
43 PF07782 DC_STAMP: DC-STAMP-li 41.6 2.6E+02 0.0056 25.0 10.2 35 139-173 139-173 (191)
44 PRK11519 tyrosine kinase; Prov 38.6 1.8E+02 0.0039 31.3 9.2 33 212-244 266-298 (719)
45 PF08614 ATG16: Autophagy prot 38.3 66 0.0014 28.8 5.1 40 256-295 111-150 (194)
46 KOG0250 DNA repair protein RAD 38.1 2.4E+02 0.0052 32.6 10.2 107 167-275 608-724 (1074)
47 PF14584 DUF4446: Protein of u 38.0 70 0.0015 28.3 5.1 53 231-284 24-76 (151)
48 TIGR01010 BexC_CtrB_KpsE polys 37.0 3.6E+02 0.0079 26.0 10.3 65 222-286 216-296 (362)
49 PF08614 ATG16: Autophagy prot 36.5 45 0.00098 29.9 3.7 43 258-300 134-176 (194)
50 PF10146 zf-C4H2: Zinc finger- 36.5 3.2E+02 0.0069 25.9 9.5 45 252-296 41-88 (230)
51 PHA02702 ORF033 IMV membrane p 36.1 1.1E+02 0.0024 24.9 5.4 30 147-176 42-75 (78)
52 PF05392 COX7B: Cytochrome C o 35.5 32 0.00069 28.0 2.3 33 39-71 42-74 (80)
53 PF01763 Herpes_UL6: Herpesvir 35.1 48 0.001 35.3 4.2 39 208-246 372-410 (557)
54 PF14966 DNA_repr_REX1B: DNA r 34.5 1.1E+02 0.0023 25.2 5.3 71 225-295 4-83 (97)
55 PRK00888 ftsB cell division pr 34.4 57 0.0012 27.1 3.8 43 262-305 28-70 (105)
56 PF07106 TBPIP: Tat binding pr 34.2 2.2E+02 0.0048 24.7 7.6 64 207-275 74-137 (169)
57 PF04156 IncA: IncA protein; 33.9 3.2E+02 0.0069 23.8 14.4 28 267-294 143-170 (191)
58 PF09726 Macoilin: Transmembra 33.9 4.6E+02 0.0099 28.8 11.3 22 159-180 125-146 (697)
59 PRK11281 hypothetical protein; 33.8 2.9E+02 0.0063 31.9 10.2 66 222-287 89-161 (1113)
60 PF06008 Laminin_I: Laminin Do 33.4 2.9E+02 0.0063 25.7 8.7 75 220-295 94-173 (264)
61 PF10654 DUF2481: Protein of u 33.3 41 0.0009 29.3 2.8 34 208-242 9-42 (126)
62 PF08657 DASH_Spc34: DASH comp 33.3 1.4E+02 0.0029 28.8 6.6 66 209-274 177-259 (259)
63 PF03268 DUF267: Caenorhabditi 31.6 3.6E+02 0.0078 27.4 9.4 187 27-227 11-230 (353)
64 PF09787 Golgin_A5: Golgin sub 31.6 1.5E+02 0.0031 30.8 6.9 81 217-297 285-377 (511)
65 KOG3402 Predicted membrane pro 31.2 33 0.0007 28.9 1.8 32 24-55 40-77 (101)
66 smart00787 Spc7 Spc7 kinetocho 30.9 4.2E+02 0.0092 26.0 9.6 87 207-295 162-252 (312)
67 PF14142 YrzO: YrzO-like prote 30.8 43 0.00094 24.4 2.1 16 207-222 27-42 (46)
68 PF07099 DUF1361: Protein of u 30.8 95 0.0021 27.6 4.8 31 153-183 109-141 (168)
69 COG1579 Zn-ribbon protein, pos 30.7 2.8E+02 0.006 26.6 8.1 36 257-292 85-120 (239)
70 TIGR03017 EpsF chain length de 30.6 4.7E+02 0.01 25.7 10.1 34 213-246 171-204 (444)
71 PF04111 APG6: Autophagy prote 30.5 67 0.0015 31.3 4.1 31 262-292 65-95 (314)
72 PRK11546 zraP zinc resistance 30.4 3.8E+02 0.0082 23.9 8.4 24 261-284 89-112 (143)
73 PF02050 FliJ: Flagellar FliJ 30.3 2.5E+02 0.0054 21.5 9.8 79 219-297 11-95 (123)
74 PF13815 Dzip-like_N: Iguana/D 30.3 1.2E+02 0.0025 25.4 5.0 24 213-236 66-89 (118)
75 PF04156 IncA: IncA protein; 30.3 2.3E+02 0.005 24.7 7.1 12 225-236 100-111 (191)
76 PF10498 IFT57: Intra-flagella 29.6 2.2E+02 0.0047 28.6 7.6 37 262-298 274-310 (359)
77 PF13874 Nup54: Nucleoporin co 29.1 1.5E+02 0.0032 25.5 5.5 73 178-256 2-88 (141)
78 KOG0977 Nuclear envelope prote 29.1 2.5E+02 0.0054 30.1 8.2 79 207-285 100-193 (546)
79 PRK10884 SH3 domain-containing 29.0 99 0.0021 28.7 4.7 6 294-299 137-142 (206)
80 PF04849 HAP1_N: HAP1 N-termin 28.9 5.6E+02 0.012 25.6 10.1 35 264-298 272-306 (306)
81 PF08317 Spc7: Spc7 kinetochor 28.9 5E+02 0.011 25.2 9.8 71 217-292 181-254 (325)
82 PF14931 IFT20: Intraflagellar 28.8 2.9E+02 0.0063 23.7 7.2 77 218-297 18-102 (120)
83 PF09486 HrpB7: Bacterial type 28.3 4.4E+02 0.0096 23.7 8.7 40 262-301 87-126 (158)
84 PRK09039 hypothetical protein; 28.3 4.6E+02 0.01 25.9 9.5 59 221-295 138-196 (343)
85 PF13870 DUF4201: Domain of un 28.0 4.1E+02 0.0089 23.2 9.3 89 210-298 3-121 (177)
86 PF12325 TMF_TATA_bd: TATA ele 28.0 2.1E+02 0.0046 24.5 6.2 49 251-299 20-75 (120)
87 PF12795 MscS_porin: Mechanose 27.6 4.2E+02 0.0092 24.3 8.6 52 227-278 52-109 (240)
88 TIGR03007 pepcterm_ChnLen poly 27.6 3.4E+02 0.0075 27.2 8.7 62 224-285 279-348 (498)
89 PF12896 Apc4: Anaphase-promot 27.4 1.2E+02 0.0025 26.9 4.8 49 211-259 29-85 (210)
90 PF11352 DUF3155: Protein of u 26.8 22 0.00047 29.3 0.1 11 298-308 73-83 (90)
91 PF03980 Nnf1: Nnf1 ; InterPr 26.8 1.1E+02 0.0023 24.9 4.1 42 246-287 64-106 (109)
92 PF10251 PEN-2: Presenilin enh 26.7 43 0.00094 27.8 1.8 21 36-56 53-73 (94)
93 PRK10404 hypothetical protein; 26.6 1.4E+02 0.003 24.9 4.7 42 266-307 36-81 (101)
94 PF11833 DUF3353: Protein of u 26.5 1.1E+02 0.0025 28.0 4.6 55 32-86 132-192 (194)
95 PRK03947 prefoldin subunit alp 26.4 3.9E+02 0.0084 22.4 8.8 35 208-242 8-42 (140)
96 COG5346 Predicted membrane pro 26.1 1.6E+02 0.0034 26.1 5.2 59 160-235 24-82 (136)
97 PRK06008 flgL flagellar hook-a 26.0 4.7E+02 0.01 25.4 9.0 45 217-261 14-58 (348)
98 PF10186 Atg14: UV radiation r 26.0 4.1E+02 0.0088 24.2 8.2 34 262-295 71-104 (302)
99 PF06703 SPC25: Microsomal sig 25.2 79 0.0017 27.4 3.3 75 22-101 11-86 (162)
100 PTZ00421 coronin; Provisional 25.1 1.2E+02 0.0025 31.4 4.9 36 259-294 451-486 (493)
101 PF09971 DUF2206: Predicted me 25.0 6.5E+02 0.014 25.3 9.9 79 80-176 125-205 (367)
102 PF06548 Kinesin-related: Kine 24.9 2.8E+02 0.0062 29.3 7.5 42 262-303 196-243 (488)
103 PF11365 DUF3166: Protein of u 24.8 2.2E+02 0.0048 23.8 5.6 80 207-299 12-93 (96)
104 PF04728 LPP: Lipoprotein leuc 24.5 2E+02 0.0042 22.0 4.8 32 262-293 11-42 (56)
105 PF02932 Neur_chan_memb: Neuro 24.1 2.6E+02 0.0057 22.4 5.9 17 122-138 27-43 (237)
106 PF10097 DUF2335: Predicted me 23.6 1.8E+02 0.0039 21.3 4.3 32 207-238 16-47 (50)
107 KOG3973 Uncharacterized conser 23.4 50 0.0011 33.8 1.9 28 235-262 248-275 (465)
108 KOG4673 Transcription factor T 23.4 3.5E+02 0.0076 30.4 8.1 82 211-299 472-561 (961)
109 PF07856 Orai-1: Mediator of C 23.0 2.8E+02 0.0061 25.2 6.4 22 154-175 144-165 (175)
110 PHA02246 hypothetical protein 22.8 76 0.0017 29.2 2.7 82 106-188 51-146 (192)
111 COG5102 SFT2 Membrane protein 22.3 6.6E+02 0.014 23.6 9.3 37 101-137 117-153 (201)
112 PF10224 DUF2205: Predicted co 22.1 77 0.0017 25.6 2.4 37 265-308 20-56 (80)
113 PF11239 DUF3040: Protein of u 21.8 1.8E+02 0.004 22.7 4.4 42 16-60 20-61 (82)
114 PF05266 DUF724: Protein of un 21.7 1.4E+02 0.003 27.4 4.2 48 255-302 125-172 (190)
115 KOG2264 Exostosin EXT1L [Signa 21.6 8.9E+02 0.019 26.9 10.5 72 215-299 81-152 (907)
116 PF04859 DUF641: Plant protein 21.6 4.2E+02 0.009 23.2 6.9 59 228-296 53-115 (131)
117 PF06210 DUF1003: Protein of u 21.5 4.4E+02 0.0096 22.1 6.9 62 41-102 2-69 (108)
118 PF11559 ADIP: Afadin- and alp 21.5 5.1E+02 0.011 22.0 7.8 6 188-193 13-18 (151)
119 PF15463 ECM11: Extracellular 21.4 83 0.0018 27.1 2.6 36 207-242 81-116 (139)
120 PF15254 CCDC14: Coiled-coil d 21.3 2.5E+02 0.0054 31.6 6.6 77 214-299 463-546 (861)
121 PF00038 Filament: Intermediat 21.2 5.6E+02 0.012 23.9 8.3 30 274-303 254-283 (312)
122 PF03245 Phage_lysis: Bacterio 21.1 1.3E+02 0.0028 25.6 3.7 36 269-304 8-43 (125)
123 COG4252 Predicted transmembran 21.0 2E+02 0.0044 29.4 5.6 44 39-88 352-395 (400)
124 COG1730 GIM5 Predicted prefold 20.9 2.1E+02 0.0045 25.4 5.0 38 260-297 5-42 (145)
125 PF10856 DUF2678: Protein of u 20.7 1.3E+02 0.0027 26.3 3.5 30 28-57 17-51 (118)
126 PRK10803 tol-pal system protei 20.6 2.3E+02 0.0051 26.8 5.7 39 257-295 50-88 (263)
127 PRK12704 phosphodiesterase; Pr 20.3 5.2E+02 0.011 27.1 8.6 44 257-300 99-142 (520)
128 TIGR00540 hemY_coli hemY prote 20.3 5.9E+02 0.013 24.9 8.5 44 49-92 8-62 (409)
129 PF05568 ASFV_J13L: African sw 20.2 1.6E+02 0.0035 27.0 4.2 42 139-181 24-71 (189)
130 PF14728 PHTB1_C: PTHB1 C-term 20.0 5.5E+02 0.012 26.0 8.4 46 237-284 239-284 (377)
131 PRK12717 flgL flagellar hook-a 20.0 7.1E+02 0.015 26.1 9.4 41 221-261 15-55 (523)
No 1
>PF14802 TMEM192: TMEM192 family
Probab=100.00 E-value=2.7e-60 Score=436.21 Aligned_cols=196 Identities=33% Similarity=0.473 Sum_probs=182.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhcccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccc
Q 021742 38 SIFGSVVYCFVLAGYAILAAGTTWIFHPIHY--LIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIV 115 (308)
Q Consensus 38 ~~~g~~~y~~ll~~~A~~~~~~~wi~~~~~~--~~~~ll~~~~v~LWllt~l~d~yv~~~H~k~Rl~GYl~Fyr~Tr~lk 115 (308)
-+..+++.+++.++.++++++.+|.+-+..+ -..++++|+||++|++|+++|+|+|+||+|+|++||++|||+|+++|
T Consensus 23 Tv~~~~l~ll~~v~l~~~~~vl~~~~~~~~~~C~~y~iily~~v~lW~lt~l~d~y~k~~H~klr~~GY~~fyr~t~~~r 102 (236)
T PF14802_consen 23 TVPIFSLLLLLSVVLAIVGFVLCWYPPPDEDKCDVYFIILYLHVALWLLTYLFDRYIKHQHQKLRLQGYLDFYRKTKRLR 102 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445677888888999999999999876665 34679999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHhcc---cc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhh
Q 021742 116 RLPFAITAYGTAAMLLVIVWRPH---IS--------ILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMK 184 (308)
Q Consensus 116 rlPl~I~S~Gna~LLli~~~~~~---~~--------~Ls~~~ilriil~lElv~~l~~li~YivkV~rFNk~kp~PDVl~ 184 (308)
|+||+|||+||++||++++|.++ ++ ++++..++++++++|++|++||++.||+||+||||+||+|||++
T Consensus 103 r~Pl~ivS~gna~LLlv~~~~~~~~~~~~~~~c~~~~ls~~~~l~i~~~lE~~~~~~~~i~Yiv~V~kFN~~~~~PDv~~ 182 (236)
T PF14802_consen 103 RLPLQIVSLGNAVLLLVQAWQHHYFGPDFAEYCSVAPLSPQLYLQILCSLELLVLLPFLIIYIVKVRKFNKARPPPDVLR 182 (236)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccccchhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCch
Confidence 99999999999999999999998 22 39999999999999999999999999999999999999999999
Q ss_pred cccC--CCCCCCCCCCccccCCCc---hhHhHHHHHHHHHHHhHHhhHHHHHHH
Q 021742 185 SLYS--PLQPSSSLEGLRYHDGGR---LSDEQMALLQYQRENLHFLSEEILRLQ 233 (308)
Q Consensus 185 ee~s--~~~ps~s~~E~Gfrd~g~---llEKQADLIrYLkehNa~LskriL~Lq 233 (308)
++++ +.+|+++++|+|||++++ ++|||||||+||||||++||||||+||
T Consensus 183 ~~~~~~~~~~~~~~~e~g~r~~~~~eellEkQadlI~yLk~hn~~L~~ril~l~ 236 (236)
T PF14802_consen 183 EEYSRSYLYPSSSSSELGFRDGSSLEELLEKQADLIRYLKEHNARLSRRILALT 236 (236)
T ss_pred hhhccccCCCCCCccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999 889999999999998887 999999999999999999999999985
No 2
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=87.33 E-value=3.7 Score=39.06 Aligned_cols=77 Identities=18% Similarity=0.368 Sum_probs=57.4
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHh---hhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 021742 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (308)
Q Consensus 218 LkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelR---a~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (308)
.-|..-.++|+|...-....+-+-...| --||+-.||.+||.|.| .++-|-...+.+.+.-++....||++||++
T Consensus 16 ~~dDlE~i~kelie~l~~~~~qk~l~~g--E~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqL 93 (272)
T KOG4552|consen 16 SADDLEHIVKELIETLINRDKQKMLKNG--ETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQL 93 (272)
T ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHhcc--hHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455566777777655444333333334 45799999999999998 567777778889999999999999999998
Q ss_pred Hh
Q 021742 295 RN 296 (308)
Q Consensus 295 r~ 296 (308)
..
T Consensus 94 qk 95 (272)
T KOG4552|consen 94 QK 95 (272)
T ss_pred HH
Confidence 64
No 3
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=85.16 E-value=34 Score=32.28 Aligned_cols=60 Identities=15% Similarity=0.019 Sum_probs=33.7
Q ss_pred cccchhhH-HHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHHH-HHHHHHHHHHHHHhHHHh
Q 021742 36 SHSIFGSV-VYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLA-LTGIFQQYFVYQVQKIRL 101 (308)
Q Consensus 36 ~~~~~g~~-~y~~ll~~~A~~~~~~~wi~~~~~~~~~~ll~~~~v~LWl-lt~l~d~yv~~~H~k~Rl 101 (308)
+-...|++ +...+++++++.++..... +. |+..+..=.++|. +.+.+||++.-..+|.+.
T Consensus 14 k~~~~G~~vl~ta~la~~s~~~a~~~~~-----~~-~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~ 75 (301)
T PF14362_consen 14 KYAGIGAAVLFTALLAGLSGGYALYTVF-----GG-PVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDG 75 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cc-chHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 33345555 4444555555555544332 11 1144444446775 467799999998776655
No 4
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.65 E-value=21 Score=32.42 Aligned_cols=93 Identities=27% Similarity=0.358 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhHHhhHHHHHHHHHhhhh---------cccCCCCCchhhhHhhhhh------chhH-------Hh---
Q 021742 210 EQMALLQYQRENLHFLSEEILRLQECLSKY---------EQSDDGSTPQVDLAHLLAA------RDQE-------LR--- 264 (308)
Q Consensus 210 KQADLIrYLkehNa~LskriL~Lq~~l~ky---------e~~~~gst~qvdl~h~la~------r~qe-------lR--- 264 (308)
+||+|+.-|+.=....=+++=.|..+++.- ..++.+.+| ||...|.. |-.+ ||
T Consensus 13 ~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~--dLe~~l~rLeEEqqR~~~L~qvN~lLReQL 90 (182)
T PF15035_consen 13 RQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSP--DLEEALIRLEEEQQRSEELAQVNALLREQL 90 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcc--cHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 577777777666666666666666666322 112222233 44333322 1113 32
Q ss_pred --------hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhccccccc
Q 021742 265 --------TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQVFSS 304 (308)
Q Consensus 265 --------a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~~e 304 (308)
+|+.|+..+.++...+|..+..|+++-+.=+..-++|++.
T Consensus 91 Eq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~ 138 (182)
T PF15035_consen 91 EQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSS 138 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7888888899999999999999999999888888888764
No 5
>PF14802 TMEM192: TMEM192 family
Probab=78.15 E-value=22 Score=33.68 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.0
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhh
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKY 239 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~ky 239 (308)
-.+.+.|++++|.|-.++|.++..+||+++.++
T Consensus 203 ~~~~~eellEkQadlI~yLk~hn~~L~~ril~l 235 (236)
T PF14802_consen 203 DGSSLEELLEKQADLIRYLKEHNARLSRRILAL 235 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445999999999999999999999999998765
No 6
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.44 E-value=9.2 Score=32.74 Aligned_cols=80 Identities=26% Similarity=0.356 Sum_probs=52.6
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh-hh---HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 021742 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV-DL---AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (308)
Q Consensus 217 YLkehNa~LskriL~Lq~~l~kye~~~~gst~qv-dl---~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (308)
.|.-..+.+--++-.++.++++-++..|.-+..+ .+ ..-+.+-..++..+.+++..++.....+--+++||+-++.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 5666666666666666666666655533322221 22 1222344456668888888899999999999999998888
Q ss_pred HHHh
Q 021742 293 RVRN 296 (308)
Q Consensus 293 ~~r~ 296 (308)
.+|.
T Consensus 100 EL~~ 103 (120)
T PF12325_consen 100 ELRA 103 (120)
T ss_pred HHHH
Confidence 7764
No 7
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.74 E-value=4.4 Score=39.88 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=35.9
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhcccccccccC
Q 021742 257 AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQVFSSSIF 307 (308)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~~e~~~ 307 (308)
.+-.+|+..-.+|+-.-|.||++=-.+||+|++|+|+. ++.+++|.+
T Consensus 56 ~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~----g~~~~~nNW 102 (313)
T KOG3088|consen 56 STQAKDLAKKQAELLKKQEELRRKEQELDRRERALARA----GIVIRENNW 102 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc----cCcccccCC
Confidence 34455666677777778889999999999999999993 566666653
No 8
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=74.11 E-value=24 Score=28.88 Aligned_cols=63 Identities=33% Similarity=0.425 Sum_probs=48.6
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhh--HhHHHHHHH
Q 021742 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVA--EREAEVLRV 294 (308)
Q Consensus 217 YLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~--er~~e~~~~ 294 (308)
|+.+.|..|.++|-.|++++ ++. .|+=-.+.|-.+++.|++.-+++-+ ||+..++.|
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qv---e~n------------------Pevtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~ei 79 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQV---EHN------------------PEVTRFAMENIRLREELRRLQSFYVEGEREMLLQEI 79 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HhC------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788899999999999988 443 3555678899999999999999998 566555555
Q ss_pred Hhhccc
Q 021742 295 RNTNNQ 300 (308)
Q Consensus 295 r~~n~q 300 (308)
-..-+|
T Consensus 80 s~L~~~ 85 (86)
T PF12711_consen 80 SELRDQ 85 (86)
T ss_pred HHHHhh
Confidence 544443
No 9
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.86 E-value=37 Score=31.10 Aligned_cols=63 Identities=22% Similarity=0.458 Sum_probs=53.8
Q ss_pred HHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhccc
Q 021742 232 LQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300 (308)
Q Consensus 232 Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q 300 (308)
-...+++|+.+ +-|+.-+++....|+|++-..+...+...+.+-.-+-+.|.|+++.+..++.
T Consensus 45 q~kAL~k~e~~------e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 45 QEKALQKYEDT------EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468999988 4477888999999999999999999999999999999999999988877654
No 10
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.08 E-value=25 Score=37.93 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=69.1
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhH
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE 286 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e 286 (308)
-..+....++-|+++|..|..++.+|+....++++.-++----++. =...+.|+|+.--+.+-|.-||.-....+++
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~---~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD---KVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888899999999998888888888887763322222332 2345668889999999999999999999998
Q ss_pred hHHHHHHHHhhcc
Q 021742 287 REAEVLRVRNTNN 299 (308)
Q Consensus 287 r~~e~~~~r~~n~ 299 (308)
=..++.+++.++.
T Consensus 500 L~~~l~~l~k~~~ 512 (652)
T COG2433 500 LERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888886654
No 11
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.73 E-value=12 Score=38.58 Aligned_cols=55 Identities=29% Similarity=0.380 Sum_probs=38.8
Q ss_pred hhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhccccccc
Q 021742 250 VDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQVFSS 304 (308)
Q Consensus 250 vdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~~e 304 (308)
.|+.|-||-=++---.++|++..+..|-++-++-+.+|+.|++++...|.|--||
T Consensus 16 ~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 16 IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666665555557777777777777777777777777777777777775544
No 12
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=63.49 E-value=51 Score=30.75 Aligned_cols=78 Identities=15% Similarity=0.353 Sum_probs=61.3
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCC-chh--hhHhhhhhchhHHhh--------------hHHHHHhHHHHHHH
Q 021742 217 YQRENLHFLSEEILRLQECLSKYEQSDDGST-PQV--DLAHLLAARDQELRT--------------LSAEMNQLQSELRL 279 (308)
Q Consensus 217 YLkehNa~LskriL~Lq~~l~kye~~~~gst-~qv--dl~h~la~r~qelRa--------------~~Ae~~q~~~el~~ 279 (308)
=||...+.|-.+|.+.+...++.... +.+. ..| .+.-||+-.+++||. +...++-+.+++..
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~-~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~ 178 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSD-TDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDG 178 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 48899999999999999998765222 2222 223 778899977777754 56888899999999
Q ss_pred HHhhhhHhHHHHHHHH
Q 021742 280 ARSFVAEREAEVLRVR 295 (308)
Q Consensus 280 ar~li~er~~e~~~~r 295 (308)
-.+-+..|..|++.++
T Consensus 179 Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 179 LESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999886
No 13
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=63.18 E-value=4.6 Score=29.10 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhhhhcccccc
Q 021742 46 CFVLAGYAILAAGTTWIFHPIHY 68 (308)
Q Consensus 46 ~~ll~~~A~~~~~~~wi~~~~~~ 68 (308)
.|+|.||+++++++.|+.....|
T Consensus 19 vIil~GF~~Va~~si~lLs~~~d 41 (42)
T TIGR02808 19 FIILSGFVAVAVTSILLLNAFGD 41 (42)
T ss_pred hHHhhhhHHHHHHHHHHHHhhcC
Confidence 47899999999999999765443
No 14
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=62.84 E-value=13 Score=27.74 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=32.9
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhccccccc
Q 021742 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQVFSS 304 (308)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~~e 304 (308)
+...+.+|+++++.++...+...++-+.++++++. |..|+++
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~-~~~~ie~ 59 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKN-DPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 45677888888888888888888888888888854 5666654
No 15
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=62.75 E-value=30 Score=33.45 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh
Q 021742 213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV 250 (308)
Q Consensus 213 DLIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qv 250 (308)
+-+.|+.+....+.+++-..+.++..|++......|+-
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~ 207 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKA 207 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH
Confidence 56678888888888899999999999998855544443
No 16
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.11 E-value=48 Score=30.74 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=53.8
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhH
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE 286 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e 286 (308)
+-.+|-.--.=.++-+..|.+++-.|+.++++-+.+-+ +-.-++...++.++++.-.|.+|-.+++.|+..++..+++
T Consensus 80 V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 80 IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWN--QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444566667777888888888866543311 2222567777777777766777777777777776666665
Q ss_pred hHHHHHHHH
Q 021742 287 REAEVLRVR 295 (308)
Q Consensus 287 r~~e~~~~r 295 (308)
=+++...+.
T Consensus 158 l~~~~~~~~ 166 (206)
T PRK10884 158 ANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHH
Confidence 455544443
No 17
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=57.72 E-value=17 Score=28.83 Aligned_cols=47 Identities=19% Similarity=0.096 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhcccCCCCCCCCCCCccccCC
Q 021742 152 MLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDG 204 (308)
Q Consensus 152 l~lElv~~l~~li~YivkV~rFNk~kp~PDVl~ee~s~~~ps~s~~E~Gfrd~ 204 (308)
+.+=+|+++..+++|.++-++=+.+.++|+-.+.++. -.-.+||.|.
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~q~~~~~~e~y~~~------~~~kT~yVd~ 52 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTTQNTNPSTENYEKM------ENLKTGYVDK 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCchhhcCCc------cccchhHHhc
Confidence 3444567778889999999999999999987222222 3335788873
No 18
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=57.51 E-value=68 Score=32.15 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCC
Q 021742 212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDD 244 (308)
Q Consensus 212 ADLIrYLkehNa~LskriL~Lq~~l~kye~~~~ 244 (308)
.+.++|+.+.+..+.+++-..++++.+|++...
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~ 192 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQENG 192 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 357889999999999999999999999987643
No 19
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=57.43 E-value=7.4 Score=28.11 Aligned_cols=22 Identities=23% Similarity=0.677 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhhhhccccc
Q 021742 46 CFVLAGYAILAAGTTWIFHPIH 67 (308)
Q Consensus 46 ~~ll~~~A~~~~~~~wi~~~~~ 67 (308)
.|+|.||+++++.+.|+.....
T Consensus 19 vI~L~GF~~Vav~~~~lL~~~~ 40 (42)
T PF09574_consen 19 VIILSGFAAVAVASIWLLSLTK 40 (42)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc
Confidence 4789999999999999976544
No 20
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=55.42 E-value=84 Score=30.03 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=6.5
Q ss_pred CCCCCchhhhH
Q 021742 243 DDGSTPQVDLA 253 (308)
Q Consensus 243 ~~gst~qvdl~ 253 (308)
++|..++.++.
T Consensus 189 ~~g~is~~~~~ 199 (423)
T TIGR01843 189 EKGLVSRLELL 199 (423)
T ss_pred HcCCCCHHHHH
Confidence 45666666653
No 21
>PRK11637 AmiB activator; Provisional
Probab=54.20 E-value=41 Score=33.54 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=23.0
Q ss_pred HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 021742 253 AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (308)
Q Consensus 253 ~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (308)
..-+...++++..+.+++++++.|+..++.-|+++..++.
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666666666666555555543
No 22
>PRK09039 hypothetical protein; Validated
Probab=53.13 E-value=75 Score=31.32 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhh
Q 021742 213 ALLQYQRENLHFLSEEILRLQECLS 237 (308)
Q Consensus 213 DLIrYLkehNa~LskriL~Lq~~l~ 237 (308)
+++..=+..+.-|..+|-.++.+++
T Consensus 67 e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 67 DLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444445555555555555555543
No 23
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=51.65 E-value=49 Score=34.76 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=50.0
Q ss_pred HHHHHHhHHhhH----------HHHHHHHHhhhhcccCCCC-CchhhhHhhhh--hchhHHh------hhHHHHHhHHHH
Q 021742 216 QYQRENLHFLSE----------EILRLQECLSKYEQSDDGS-TPQVDLAHLLA--ARDQELR------TLSAEMNQLQSE 276 (308)
Q Consensus 216 rYLkehNa~Lsk----------riL~Lq~~l~kye~~~~gs-t~qvdl~h~la--~r~qelR------a~~Ae~~q~~~e 276 (308)
+|-|+|..++.+ .+..||++|.|-+..++.. +-.+||...+. -|=.|+| ..-.|+.||+-+
T Consensus 238 k~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~ 317 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVA 317 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 477888888887 5678888897765554443 77789987776 3333554 333688888888
Q ss_pred HHHHHhhhhHh
Q 021742 277 LRLARSFVAER 287 (308)
Q Consensus 277 l~~ar~li~er 287 (308)
|+.|.-.+.-+
T Consensus 318 L~kAEkele~n 328 (575)
T KOG4403|consen 318 LEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHhc
Confidence 88876666544
No 24
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=51.24 E-value=68 Score=30.66 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=16.1
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 021742 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (308)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (308)
++..+.+++.++++++..++..++.-+.++.+.
T Consensus 152 ~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 152 QIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555554444444433
No 25
>PRK15396 murein lipoprotein; Provisional
Probab=50.78 E-value=43 Score=26.92 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=28.2
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 021742 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (308)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (308)
++-+|.++.+|+.++...+|+-+..=..|..|-
T Consensus 33 qV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ra 65 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999888877777664
No 26
>PRK11637 AmiB activator; Provisional
Probab=50.42 E-value=1.2e+02 Score=30.19 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=39.5
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCC-CCchhhhHhhhhhchhHHhhhH-------HHHHhHHHHHH
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDG-STPQVDLAHLLAARDQELRTLS-------AEMNQLQSELR 278 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~g-st~qvdl~h~la~r~qelRa~~-------Ae~~q~~~el~ 278 (308)
+.+.+.++|..+++.-..|....-.|.+++.+-+..... -.-+.+|....+.|.+++-.|. +++++++.+..
T Consensus 164 i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~ 243 (428)
T PRK11637 164 LNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANES 243 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777776666655555443333111 1223344444444444443332 33444444444
Q ss_pred HHHhhhh
Q 021742 279 LARSFVA 285 (308)
Q Consensus 279 ~ar~li~ 285 (308)
.-.++|+
T Consensus 244 ~L~~~I~ 250 (428)
T PRK11637 244 RLRDSIA 250 (428)
T ss_pred HHHHHHH
Confidence 4444444
No 27
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.94 E-value=68 Score=36.04 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhh
Q 021742 213 ALLQYQRENLHFLSEEILRLQECLS 237 (308)
Q Consensus 213 DLIrYLkehNa~LskriL~Lq~~l~ 237 (308)
+=|.|++.|+..|..|+-.|+..+-
T Consensus 430 e~iv~~nak~~ql~~eletLn~k~q 454 (1118)
T KOG1029|consen 430 EWIVYLNAKKKQLQQELETLNFKLQ 454 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477999999999999999888773
No 28
>PF00669 Flagellin_N: Bacterial flagellin N-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1IO1_A 1UCU_A 3A5X_A 3V47_C 2D4X_A 3PWX_B 3K8V_A 2ZBI_B 3K8W_A.
Probab=48.95 E-value=1.5e+02 Score=24.34 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=45.4
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchh--HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 021742 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ--ELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (308)
Q Consensus 218 LkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~q--elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (308)
++.+...+.+++-+++.+++-.++.+.++...++....+.-|.+ .+.....-.+...+-|..+..-+.+=..-++++
T Consensus 10 ~~~~l~~~~~~l~~~~~qlsTG~k~~~~sd~p~~~~~~~~l~~~~~~~~~~~~n~~~~~~~l~~~~~al~~i~~~l~~~ 88 (139)
T PF00669_consen 10 ALNNLNKLQSNLNKLQEQLSTGKKINSPSDDPAAASRALSLRSQISRLEQYQRNIDDAKSRLSTAETALSSISDILQRA 88 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS--TTTCGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999999999999998888777777666655544 222333333334444444444444433333333
No 29
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.76 E-value=16 Score=39.53 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhcccccchhhhhHHHHHHHHHHH
Q 021742 74 LCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIV 134 (308)
Q Consensus 74 l~~~~v~LWllt~l~d~yv~~~H~k~Rl~GYl~Fyr~Tr~lkrlPl~I~S~Gna~LLli~~ 134 (308)
+|+.-+.||++.+-++--++..+-| ..-|+++.| ||..|+.|-.++.+-..
T Consensus 119 ~~~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~--------~~~ah~igypvv~~g~~ 169 (697)
T PF09726_consen 119 ICLPTVSLWILFVYVEASVRLKDLK--SMPHLDLCR--------PFAAHCIGYPVVTLGFG 169 (697)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccC--CCcchhhcc--------cHHHhhcCCceeEeecc
Confidence 6889999999999999888876543 323566554 88888888776555443
No 30
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=46.51 E-value=1.1e+02 Score=32.92 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCch
Q 021742 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQ 249 (308)
Q Consensus 214 LIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~q 249 (308)
-++|+.+....+.+++-..+.++.+|++..+-..+.
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~ 303 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLN 303 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 478999999999999999999999999985433333
No 31
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=46.26 E-value=53 Score=35.42 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=45.8
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHh---hhHHHHHhHHHHHHHHHhhh
Q 021742 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQSELRLARSFV 284 (308)
Q Consensus 208 lEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelR---a~~Ae~~q~~~el~~ar~li 284 (308)
+=..+++-.|+-+|.+.-- .+=.....+-=|.-.+++..++ ++|.|++ .+.+|+.+|++|++.-++-|
T Consensus 32 ~G~~~~IWkfli~~V~s~r-tV~~iRgNl~~~~~~~~~~~~~--------~~e~~~~~r~~L~~everLraei~~l~~~I 102 (632)
T PF14817_consen 32 RGNMAPIWKFLIQHVRSQR-TVRKIRGNLLWYGHQQSKERKK--------SRENEARRRRELEKEVERLRAEIQELDKEI 102 (632)
T ss_pred ccCChHHHHHHHHHcCcHh-HHHHHHcceeeccccccccchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999988542 2323333343454444443444 5565553 56666666666666666666
Q ss_pred hHhHHHHHHH
Q 021742 285 AEREAEVLRV 294 (308)
Q Consensus 285 ~er~~e~~~~ 294 (308)
..++.|+.+-
T Consensus 103 ~~~e~e~~~~ 112 (632)
T PF14817_consen 103 ESREREVSRQ 112 (632)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 32
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.24 E-value=93 Score=33.15 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCC
Q 021742 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDG 245 (308)
Q Consensus 214 LIrYLkehNa~LskriL~Lq~~l~kye~~~~g 245 (308)
-++||.+....+.+++-.-..++.+|++..+-
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999987443
No 33
>PHA03049 IMV membrane protein; Provisional
Probab=46.18 E-value=29 Score=27.50 Aligned_cols=46 Identities=17% Similarity=0.032 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhcccCCCCCCCCCCCccccCC
Q 021742 153 LIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDG 204 (308)
Q Consensus 153 ~lElv~~l~~li~YivkV~rFNk~kp~PDVl~ee~s~~~ps~s~~E~Gfrd~ 204 (308)
.+=+|+++..+++|.++-++=+-+.++|-.-+.|+. -.-.+||+|.
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~------e~~kT~yvD~ 52 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKM------EDLKTGYVDK 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCChhhccCc------hhhhhhHHhh
Confidence 444566777889999999998888888864433333 3335788773
No 34
>PF08618 Opi1: Transcription factor Opi1; InterPro: IPR013927 Opi1 is a leucine zipper containing yeast transcription factor that negatively regulates phospholipid biosynthesis []. It represses the expression of several UAS(INO) cis acting element containing genes and its activity is mediated by phosphorylations catalysed by protein kinase A, protein kinase C and casein kinase II [].
Probab=44.70 E-value=51 Score=34.04 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=27.3
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 021742 213 ALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (308)
Q Consensus 213 DLIrYLkehNa~LskriL~Lq~~l~kye~~ 242 (308)
=.|++||--|.+|+.+|..||..+.+|++.
T Consensus 235 yCL~~Lr~AN~~i~~~i~~Lq~~l~e~e~~ 264 (427)
T PF08618_consen 235 YCLHWLRLANAHIDSKINFLQDVLEEYERD 264 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999999964
No 35
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=44.27 E-value=90 Score=35.82 Aligned_cols=91 Identities=23% Similarity=0.308 Sum_probs=66.9
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh-----------hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHh
Q 021742 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV-----------DLAHLLAARDQELRTLSAEMNQLQSELRLARS 282 (308)
Q Consensus 214 LIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qv-----------dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~ 282 (308)
.|.=+++|+-..-...+.+--.=.+|..+.+|++|.- -|+--||.-+.-+|.|-+||..--+-+..+|.
T Consensus 126 ~id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~ 205 (1195)
T KOG4643|consen 126 VIDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRN 205 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655554444444444457888877765432 45556777778889999999999999999999
Q ss_pred hhhHhHHHHHHHHhhccccccc
Q 021742 283 FVAEREAEVLRVRNTNNQVFSS 304 (308)
Q Consensus 283 li~er~~e~~~~r~~n~q~~~e 304 (308)
.|+-.++|+..+|-.+.-+.+|
T Consensus 206 eLddleae~~klrqe~~e~l~e 227 (1195)
T KOG4643|consen 206 ELDDLEAEISKLRQEIEEFLDE 227 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887665554
No 36
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=44.22 E-value=1.8e+02 Score=25.60 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh
Q 021742 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (308)
Q Consensus 217 YLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (308)
|++.+|..|+..+=.-+..++.=+..-.....| |.+=.++.+.-..+--+|..++..+.+++..|+..|.++..
T Consensus 16 ~~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~q------L~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ 89 (135)
T TIGR03495 16 WQSQRLRNARADLERANRVLKAQQAELASKANQ------LIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKR 89 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777666666663322221111111 11112222333333445666777788899999999999988
Q ss_pred hccc
Q 021742 297 TNNQ 300 (308)
Q Consensus 297 ~n~q 300 (308)
.|..
T Consensus 90 ENe~ 93 (135)
T TIGR03495 90 ENED 93 (135)
T ss_pred cCHH
Confidence 8864
No 37
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=43.22 E-value=85 Score=29.44 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhcccCCCCCchh-hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhh
Q 021742 228 EILRLQECLSKYEQSDDGSTPQV-DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (308)
Q Consensus 228 riL~Lq~~l~kye~~~~gst~qv-dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (308)
+|+.|..++..-...-+++.++. ++...+-++..|+-....|+.+..+|..+=|-=++..++|++.+|..
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~ 102 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREE 102 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHH
Confidence 68899999876666666666665 67778888888888888888888888888888888888888888864
No 38
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=43.14 E-value=87 Score=33.64 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=55.6
Q ss_pred HhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhccc
Q 021742 221 NLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300 (308)
Q Consensus 221 hNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q 300 (308)
.|..|-+.+-.||...-+-. -.-.+|...|.+-.+=.|.+.+.+++++.++..-+-=++.++.|++.+...++|
T Consensus 161 QN~eLK~QL~Elq~~Fv~lt------ne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq 234 (617)
T PF15070_consen 161 QNRELKEQLAELQDAFVKLT------NENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQ 234 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHH------HhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555555555555321111 123466677777666668999999999999999999999999999999999988
Q ss_pred cc
Q 021742 301 VF 302 (308)
Q Consensus 301 ~~ 302 (308)
|.
T Consensus 235 ~~ 236 (617)
T PF15070_consen 235 YL 236 (617)
T ss_pred HH
Confidence 65
No 39
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=42.41 E-value=1.7e+02 Score=28.74 Aligned_cols=84 Identities=26% Similarity=0.349 Sum_probs=58.0
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhh--------------cccCCCC-Cch-----------hhhHhhhhhch
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKY--------------EQSDDGS-TPQ-----------VDLAHLLAARD 260 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~ky--------------e~~~~gs-t~q-----------vdl~h~la~r~ 260 (308)
+-||+.| +..+|+....|..++-.|++++..- ..+.|++ +|. ..-+++|.+=+
T Consensus 135 ~~eK~~e-lEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG 213 (302)
T PF09738_consen 135 YREKIRE-LERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAG 213 (302)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccC
Confidence 3455555 4777777888888888888888544 2222222 122 25577888773
Q ss_pred -h----HHhhhHHHHHhHHHHHHHHHhhhhHhHHHH
Q 021742 261 -Q----ELRTLSAEMNQLQSELRLARSFVAEREAEV 291 (308)
Q Consensus 261 -q----elRa~~Ae~~q~~~el~~ar~li~er~~e~ 291 (308)
. -||-+.-|.+.+.+|++-.+.-+.|+.++-
T Consensus 214 ~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~ 249 (302)
T PF09738_consen 214 DGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEG 249 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 357999999999999999999998765543
No 40
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=42.03 E-value=1.1e+02 Score=24.28 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHhhccccccc
Q 021742 273 LQSELRLARSFVAEREAEVLRVRNTNNQVFSS 304 (308)
Q Consensus 273 ~~~el~~ar~li~er~~e~~~~r~~n~q~~~e 304 (308)
.+.+++..+..|.++-.+++++...|.+.++.
T Consensus 82 ~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~ 113 (143)
T PF05130_consen 82 EREELQALWRELRELLEELQELNERNQQLLEQ 113 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777777777777777777776654
No 41
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=41.75 E-value=2.9e+02 Score=25.59 Aligned_cols=46 Identities=9% Similarity=-0.083 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhHHHh----hhHHHHHHHhhcccccchhhhhHHHHHH
Q 021742 84 LTGIFQQYFVYQVQKIRL----QGYYSFSQKLKHIVRLPFAITAYGTAAM 129 (308)
Q Consensus 84 lt~l~d~yv~~~H~k~Rl----~GYl~Fyr~Tr~lkrlPl~I~S~Gna~L 129 (308)
+++.+-...++.|++... ..-.+.|+++.+--..+..+........
T Consensus 64 ~~~~~~~~~~k~~~~~~~~~deD~~~~~~~~~~r~~~~~~i~~~i~~i~~ 113 (248)
T PF11368_consen 64 LTFYFIYKSRKYKKLYEEEEDEDENEEYYRKMNRKLEYATIFFNISIIIS 113 (248)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555565554 3556688888776555544444443333
No 42
>PF14182 YgaB: YgaB-like protein
Probab=41.66 E-value=60 Score=26.40 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhh
Q 021742 227 EEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (308)
Q Consensus 227 kriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (308)
.++|.||..+.||... +.||..+--| +++...|..|+....++..|+..
T Consensus 14 D~LL~LQsElERCqeI-----------------E~eL~~l~~e-----a~l~~i~~EI~~mkk~Lk~Iq~~ 62 (79)
T PF14182_consen 14 DKLLFLQSELERCQEI-----------------EKELKELERE-----AELHSIQEEISQMKKELKEIQRV 62 (79)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999887765 3444444333 44444555555555555554443
No 43
>PF07782 DC_STAMP: DC-STAMP-like protein; InterPro: IPR012858 This group of sequences is similar to a region of the dendritic cell-specific transmembrane protein (DC-STAMP, Q9H295 from SWISSPROT). This is thought to be a novel receptor protein that shares no identity with other multimembrane-spanning proteins []. It is thought to have seven putative transmembrane regions [], two of which are found in the region featured in this family. DC-STAMP is also described as having potential N-linked glycosylation sites and a potential phosphorylation site for PKC [], but these are not conserved. ; GO: 0016021 integral to membrane
Probab=41.59 E-value=2.6e+02 Score=24.97 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=25.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021742 139 ISILSISTLLRIIMLIEAICAASFMSVYIGYVHQY 173 (308)
Q Consensus 139 ~~~Ls~~~ilriil~lElv~~l~~li~YivkV~rF 173 (308)
|+..+...+.++.+..=+++.+.++-.|+.|.|+-
T Consensus 139 P~~p~~~~~~~i~~l~~l~~ll~~le~Y~~RLR~~ 173 (191)
T PF07782_consen 139 PSPPDYSVYIQIGLLYLLLWLLVLLEPYALRLRRV 173 (191)
T ss_pred CcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555777777788888889999998874
No 44
>PRK11519 tyrosine kinase; Provisional
Probab=38.58 E-value=1.8e+02 Score=31.25 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCC
Q 021742 212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDD 244 (308)
Q Consensus 212 ADLIrYLkehNa~LskriL~Lq~~l~kye~~~~ 244 (308)
..-+.|+.+....+.+++=..+..+.+|++..+
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 367889999999999999999999999998743
No 45
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.27 E-value=66 Score=28.84 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=22.7
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 021742 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (308)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (308)
+...+.+++.+.+|..+++.+++.-...|.|++..++.++
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666666555443
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=38.14 E-value=2.4e+02 Score=32.60 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=61.4
Q ss_pred HHHHHHhcCCCCCcchhhcccCCC----CCCC---CCCCccccCC--CchhHhHHHHHHHHHHHhHHhhHHHHHHHHHhh
Q 021742 167 IGYVHQYNSLNSQPDVMKSLYSPL----QPSS---SLEGLRYHDG--GRLSDEQMALLQYQRENLHFLSEEILRLQECLS 237 (308)
Q Consensus 167 ivkV~rFNk~kp~PDVl~ee~s~~----~ps~---s~~E~Gfrd~--g~llEKQADLIrYLkehNa~LskriL~Lq~~l~ 237 (308)
+.++.++|+ |||-|..-.-..+ ++.+ -.+..|.+.+ +.+-.-=.|-|++|+.-...|-++++.++.+++
T Consensus 608 a~~~m~s~~--~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~ 685 (1074)
T KOG0250|consen 608 AREFMQSDK--PPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRR 685 (1074)
T ss_pred HHHHHhcCC--CCccceeeeccCccccccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788887 6666654322111 1111 0112233222 333333357899999999999999999999999
Q ss_pred hhcccCCCCCchhh-hHhhhhhchhHHhhhHHHHHhHHH
Q 021742 238 KYEQSDDGSTPQVD-LAHLLAARDQELRTLSAEMNQLQS 275 (308)
Q Consensus 238 kye~~~~gst~qvd-l~h~la~r~qelRa~~Ae~~q~~~ 275 (308)
++|..-+..--..+ +.--.-.++..+|..-+||++++.
T Consensus 686 ~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 686 EAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988443322221 122233344456667777777666
No 47
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=38.03 E-value=70 Score=28.34 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=39.2
Q ss_pred HHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhh
Q 021742 231 RLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFV 284 (308)
Q Consensus 231 ~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li 284 (308)
+++....||+.--.|++++ |++.++...-++++.+..+.++++.+++.....+
T Consensus 24 kl~kl~r~Y~~lm~g~~~~-~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 24 KLRKLKRRYDALMRGKDGK-NLEDLLNELFDQIDELKEELEELEKRIEELEEKL 76 (151)
T ss_pred HHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667666677666 8999999999999888888888888777665443
No 48
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.01 E-value=3.6e+02 Score=26.03 Aligned_cols=65 Identities=22% Similarity=0.326 Sum_probs=36.1
Q ss_pred hHHhhHHHHHHHHHhhhhcccCCCCCchh--------hhHhhhhhchh--------HHhhhHHHHHhHHHHHHHHHhhhh
Q 021742 222 LHFLSEEILRLQECLSKYEQSDDGSTPQV--------DLAHLLAARDQ--------ELRTLSAEMNQLQSELRLARSFVA 285 (308)
Q Consensus 222 Na~LskriL~Lq~~l~kye~~~~gst~qv--------dl~h~la~r~q--------elRa~~Ae~~q~~~el~~ar~li~ 285 (308)
...|..++-.++.++..-.+.-....|+| ++...++...+ .+-...+|...++.|...|+....
T Consensus 216 i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~ 295 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLK 295 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777665544323337887 22222222111 123445677788888888887765
Q ss_pred H
Q 021742 286 E 286 (308)
Q Consensus 286 e 286 (308)
.
T Consensus 296 ~ 296 (362)
T TIGR01010 296 A 296 (362)
T ss_pred H
Confidence 3
No 49
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=36.47 E-value=45 Score=29.86 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=21.4
Q ss_pred hchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhccc
Q 021742 258 ARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300 (308)
Q Consensus 258 ~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q 300 (308)
.++.+++....-...+++|+-.-.-...--+....++...|++
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555554444444445555555544
No 50
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.46 E-value=3.2e+02 Score=25.85 Aligned_cols=45 Identities=27% Similarity=0.444 Sum_probs=34.7
Q ss_pred hHhhhhhchh---HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh
Q 021742 252 LAHLLAARDQ---ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (308)
Q Consensus 252 l~h~la~r~q---elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (308)
...|+..|.. |||-+-+..|.+.+.++-+|+.-.++...|+++..
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556655544 88888888888888888888888888888877653
No 51
>PHA02702 ORF033 IMV membrane protein; Provisional
Probab=36.06 E-value=1.1e+02 Score=24.86 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhcCC
Q 021742 147 LLRIIMLIEAICAASFM----SVYIGYVHQYNSL 176 (308)
Q Consensus 147 ilriil~lElv~~l~~l----i~YivkV~rFNk~ 176 (308)
-.|++..+|.+..+.++ +.|..+|++-|+.
T Consensus 42 ~~Rvltvle~va~l~~IPgtIiLY~aYir~L~~~ 75 (78)
T PHA02702 42 ALRVLTVLDFVSLLTTIPCTIILYFLCMQALNSR 75 (78)
T ss_pred chhHHHHHHHHHHHHHhchHHHHHHHHHHHhccc
Confidence 34677778877766544 7899999999874
No 52
>PF05392 COX7B: Cytochrome C oxidase chain VIIB; InterPro: IPR008433 Cytochrome oxidase subunit VIIB is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. The X-ray structure of azide-bound fully oxidized cytochrome c oxidase from bovine heart at 2.9 A resolution has been determined [].; GO: 0004129 cytochrome-c oxidase activity, 0005746 mitochondrial respiratory chain; PDB: 3AG2_X 3ASO_K 3ABL_X 1V55_K 1OCR_K 2DYS_X 1OCO_X 2EIK_X 3AG1_K 2Y69_X ....
Probab=35.54 E-value=32 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.561 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcccccccch
Q 021742 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (308)
Q Consensus 39 ~~g~~~y~~ll~~~A~~~~~~~wi~~~~~~~~~ 71 (308)
++||..||+..=+|..+=++.-|=+.|+-..+|
T Consensus 42 L~~Ga~FC~~~W~y~~TQ~GIeWNlSPVGRVtP 74 (80)
T PF05392_consen 42 LASGATFCVAVWTYVATQIGIEWNLSPVGRVTP 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSS------STTTS--
T ss_pred eecccchhhhhHhhhheecceeecCCcccccCc
Confidence 579999999999999999999999999887766
No 53
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=35.12 E-value=48 Score=35.30 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=35.0
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCC
Q 021742 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGS 246 (308)
Q Consensus 208 lEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gs 246 (308)
+..|.|-|+=||+-|..+-+|+=.+..+|.+|++....+
T Consensus 372 In~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~~~~~ 410 (557)
T PF01763_consen 372 INNQFDTIEDLKEENQDLEKKLRELESELSRYREEAQRA 410 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 667999999999999999999999999999999974333
No 54
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=34.45 E-value=1.1e+02 Score=25.21 Aligned_cols=71 Identities=28% Similarity=0.374 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhhh-hcccCCC------CCchhhhHhhhhhchhHHhhhHHHHHhHHHHHH--HHHhhhhHhHHHHHHHH
Q 021742 225 LSEEILRLQECLSK-YEQSDDG------STPQVDLAHLLAARDQELRTLSAEMNQLQSELR--LARSFVAEREAEVLRVR 295 (308)
Q Consensus 225 LskriL~Lq~~l~k-ye~~~~g------st~qvdl~h~la~r~qelRa~~Ae~~q~~~el~--~ar~li~er~~e~~~~r 295 (308)
|=++++.+|+++.. |.+-++| ++|--.--.+...=.++..++|.|+..++++|+ ..|..+++.=+++|.-.
T Consensus 4 Ll~~f~~~Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~~E 83 (97)
T PF14966_consen 4 LLRRFFALQERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQEQE 83 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 45677777776542 3332221 122222244445556678888899999998888 88888888777777644
No 55
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.45 E-value=57 Score=27.06 Aligned_cols=43 Identities=7% Similarity=0.064 Sum_probs=28.0
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhcccccccc
Q 021742 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQVFSSS 305 (308)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~~e~ 305 (308)
+.+.+.+|..+++.|+...+..-++=..||.+++. +..|+||-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~-~~dyiEe~ 70 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG-GQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cHHHHHHH
Confidence 45566677777777777666666666677777664 23577663
No 56
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.21 E-value=2.2e+02 Score=24.74 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=48.0
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHH
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQS 275 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~ 275 (308)
+-+-..+ |.=|++-+..|.+++=.|+++++....+ .+-.|+....+..++|+.++.+.+..+++
T Consensus 74 l~~ld~e-i~~L~~el~~l~~~~k~l~~eL~~L~~~----~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAE-IKELREELAELKKEVKSLEAELASLSSE----PTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555556 8889999999999999999999887765 34456777777777777766666655554
No 57
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.93 E-value=3.2e+02 Score=23.82 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=11.2
Q ss_pred HHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 021742 267 SAEMNQLQSELRLARSFVAEREAEVLRV 294 (308)
Q Consensus 267 ~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (308)
..|+-.++++++..+.-+.+...+..+.
T Consensus 143 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 143 EKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.92 E-value=4.6e+02 Score=28.76 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCc
Q 021742 159 AASFMSVYIGYVHQYNSLNSQP 180 (308)
Q Consensus 159 ~l~~li~YivkV~rFNk~kp~P 180 (308)
++.++.+|+--..||+..+..|
T Consensus 125 ~~~~~~~~~e~~~~~~~~~~~~ 146 (697)
T PF09726_consen 125 SLWILFVYVEASVRLKDLKSMP 146 (697)
T ss_pred HHHHHHHHHHHHHhhcccCCCc
Confidence 4556788999999999988766
No 59
>PRK11281 hypothetical protein; Provisional
Probab=33.78 E-value=2.9e+02 Score=31.92 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=40.9
Q ss_pred hHHhhHHHHHHHHHhhhhcccCC-------CCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHh
Q 021742 222 LHFLSEEILRLQECLSKYEQSDD-------GSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAER 287 (308)
Q Consensus 222 Na~LskriL~Lq~~l~kye~~~~-------gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er 287 (308)
....-+++=..++++.+.++..+ .+.+..+|+..|+.++++|-+..+++++..+++...++..++.
T Consensus 89 l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERA 161 (1113)
T PRK11281 89 LAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA 161 (1113)
T ss_pred HHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 33344455566666666665322 2334457888889889888877777777766665555444333
No 60
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=33.44 E-value=2.9e+02 Score=25.71 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=51.5
Q ss_pred HHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchh---HH--hhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 021742 220 ENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ---EL--RTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (308)
Q Consensus 220 ehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~q---el--Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (308)
.-...+-..|-.+-+++..|.. .+..+|.-|+...|+-=+. |+ |.+......+..|++.|..|+.+=+++.+..
T Consensus 94 ~~i~~l~~~i~~l~~~~~~l~~-~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~ 172 (264)
T PF06008_consen 94 QFIQNLQDNIQELIEQVESLNE-NGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKP 172 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc-ccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344566677777888888877 4566888888877765554 44 3556666667788888888887766665443
Q ss_pred H
Q 021742 295 R 295 (308)
Q Consensus 295 r 295 (308)
.
T Consensus 173 ~ 173 (264)
T PF06008_consen 173 Q 173 (264)
T ss_pred H
Confidence 3
No 61
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=33.32 E-value=41 Score=29.33 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.3
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 021742 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (308)
Q Consensus 208 lEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~ 242 (308)
=|+|..+|.|+-.++-.+|++ ..||.+|+.-...
T Consensus 9 KerQreIIsyl~n~dl~~~~~-k~LqkeLn~Lm~~ 42 (126)
T PF10654_consen 9 KERQREIISYLVNNDLSFSKR-KELQKELNQLMNE 42 (126)
T ss_pred HHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHhc
Confidence 389999999999999999875 5788888766554
No 62
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.27 E-value=1.4e+02 Score=28.79 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHHhHH------hhHHHHHHHHHhhhhcccCCCC-----------CchhhhHhhhhhchhHHhhhHHHHH
Q 021742 209 DEQMALLQYQRENLHF------LSEEILRLQECLSKYEQSDDGS-----------TPQVDLAHLLAARDQELRTLSAEMN 271 (308)
Q Consensus 209 EKQADLIrYLkehNa~------LskriL~Lq~~l~kye~~~~gs-----------t~qvdl~h~la~r~qelRa~~Ae~~ 271 (308)
+-+..+-.+..+|+.. |=.+|-.-+++|.++.++..-. .+.+|.+.++..=+.|+|.|.++++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566665543 3346666666776665542221 2345778889888889999999988
Q ss_pred hHH
Q 021742 272 QLQ 274 (308)
Q Consensus 272 q~~ 274 (308)
++|
T Consensus 257 ~Lq 259 (259)
T PF08657_consen 257 ELQ 259 (259)
T ss_pred hcC
Confidence 764
No 63
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=31.63 E-value=3.6e+02 Score=27.43 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=102.6
Q ss_pred cCcccCccCcccchhhHHHHHHHHHHHHHHhhhhhhcccccccch----------------hHHHHHHHHHHHHHHHHHH
Q 021742 27 EAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP----------------PLLCSCGVILLALTGIFQQ 90 (308)
Q Consensus 27 e~p~~~~r~~~~~~g~~~y~~ll~~~A~~~~~~~wi~~~~~~~~~----------------~ll~~~~v~LWllt~l~d~ 90 (308)
=.||-++.+. ++.| ++=+++.+.--++.+...|+|.-++.... ++.|..-+.-|-=.+.+.+
T Consensus 11 ~s~ldCs~~~-~~~~-~~t~~~ai~ii~~~f~r~~~l~~~~g~~lSf~WAEsn~fgF~~~~s~~c~~cl~~wT~~~fi~~ 88 (353)
T PF03268_consen 11 FSGLDCSAKA-KIRG-IFTRLIAIIIIALIFRRCWMLMQIEGKSLSFGWAESNMFGFMAMQSFVCAICLFGWTKNGFIPK 88 (353)
T ss_pred cCCcCcCccc-chHh-HHHHHHHHHHHHHHHHHHHHHHhcCCceeeeehhhcchhHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 3466665543 4443 44445555555556666676653332222 2677777888999999999
Q ss_pred HHHH--HHhHHHhhhHHH--HHHHhhc---ccccchhhhhHHHHHHHHHHHH-hccc-ccccHHHHH-HHHHHHHHHHHH
Q 021742 91 YFVY--QVQKIRLQGYYS--FSQKLKH---IVRLPFAITAYGTAAMLLVIVW-RPHI-SILSISTLL-RIIMLIEAICAA 160 (308)
Q Consensus 91 yv~~--~H~k~Rl~GYl~--Fyr~Tr~---lkrlPl~I~S~Gna~LLli~~~-~~~~-~~Ls~~~il-riil~lElv~~l 160 (308)
+.++ +.+++|...+.+ =|++.+. +-.+|-.++-.++++.+.+.-- .... ..-+..+++ =++..+=..++.
T Consensus 89 f~~~L~~lR~LRv~~n~~~D~Y~~lh~kafi~s~pw~v~~~s~aiy~~~~~ki~~~g~~~~~~~~~~~~~i~~l~~~is~ 168 (353)
T PF03268_consen 89 FEKKLARLRTLRVEPNQEIDDYRILHRKAFIFSIPWFVAFMSTAIYNAVHGKIIYGGAETSSWYYILDPFINFLCWYISF 168 (353)
T ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 9998 778888776654 2333332 2234555666666665555531 1111 111222222 133334445566
Q ss_pred HHHHHHHHH-------HHHhcCCCCCcchhhcccCCCCCCCCCCCccccCCCchhHhHHHHHHHHHHHhHHhhH
Q 021742 161 SFMSVYIGY-------VHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSE 227 (308)
Q Consensus 161 ~~li~Yivk-------V~rFNk~kp~PDVl~ee~s~~~ps~s~~E~Gfrd~g~llEKQADLIrYLkehNa~Lsk 227 (308)
.|+.+|.-- +..||.+=-. +.++... ..|+ ..+ ....+|.+|+++-+.=|..||.
T Consensus 169 i~L~~y~lv~~al~REi~yFN~ELe~--A~keK~L-~n~~-vL~--------~F~~RQ~eL~~lv~~~ne~L~~ 230 (353)
T PF03268_consen 169 ICLAIYFLVNSALNREIEYFNEELEK--ASKEKKL-KNPQ-VLE--------KFSHRQIELFELVNFANESLSS 230 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccc-cChH-HHH--------HHhHHHHHHHHHHHHHHHhhhh
Confidence 677777543 6678862110 1111111 1111 111 2677899999999988888887
No 64
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=31.60 E-value=1.5e+02 Score=30.75 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=45.7
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh--------hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhh----h
Q 021742 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV--------DLAHLLAARDQELRTLSAEMNQLQSELRLARSF----V 284 (308)
Q Consensus 217 YLkehNa~LskriL~Lq~~l~kye~~~~gst~qv--------dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~l----i 284 (308)
.+++++..|...|-.|..+...-+..-.|..... ...+.+-++|.|+|-..-|+.-.+.|+...++. +
T Consensus 285 ~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~ 364 (511)
T PF09787_consen 285 HLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKL 364 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 4457777777776444444433333322211111 222222233667777777777777766665554 5
Q ss_pred hHhHHHHHHHHhh
Q 021742 285 AEREAEVLRVRNT 297 (308)
Q Consensus 285 ~er~~e~~~~r~~ 297 (308)
.+|++|+|++|+.
T Consensus 365 ~~ke~E~q~lr~~ 377 (511)
T PF09787_consen 365 KEKESEIQKLRNQ 377 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999874
No 65
>KOG3402 consensus Predicted membrane protein [Function unknown]
Probab=31.20 E-value=33 Score=28.86 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=25.6
Q ss_pred hhccCcccCccCc------ccchhhHHHHHHHHHHHHH
Q 021742 24 ILHEAPLLGHRKS------HSIFGSVVYCFVLAGYAIL 55 (308)
Q Consensus 24 ~~~e~p~~~~r~~------~~~~g~~~y~~ll~~~A~~ 55 (308)
.+.-.|-+.||.. ||++|..++.++|-+|++.
T Consensus 40 ~af~~pa~~~r~QIr~YVvrSavGf~fw~ivLsaW~~~ 77 (101)
T KOG3402|consen 40 VAFHSPAFPHRRQIRNYVVRSAVGFSFWTIVLSAWALT 77 (101)
T ss_pred HHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888753 8999999999999999875
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.86 E-value=4.2e+02 Score=26.03 Aligned_cols=87 Identities=20% Similarity=0.196 Sum_probs=44.2
Q ss_pred hhHhHHHHHH----HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHh
Q 021742 207 LSDEQMALLQ----YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS 282 (308)
Q Consensus 207 llEKQADLIr----YLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~ 282 (308)
++.|+..++. =+++-...|.+++-.|+...+.-+.- ..+--..+-.-|+..++|+.....+.++++.|+..-.+
T Consensus 162 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~--d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~ 239 (312)
T smart00787 162 LLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC--DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELES 239 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555443 34455555666666666655443332 01111123344555556665666666666666666555
Q ss_pred hhhHhHHHHHHHH
Q 021742 283 FVAEREAEVLRVR 295 (308)
Q Consensus 283 li~er~~e~~~~r 295 (308)
-|.+...+++.++
T Consensus 240 ~I~~~~~~k~e~~ 252 (312)
T smart00787 240 KIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444433
No 67
>PF14142 YrzO: YrzO-like protein
Probab=30.84 E-value=43 Score=24.38 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.7
Q ss_pred hhHhHHHHHHHHHHHh
Q 021742 207 LSDEQMALLQYQRENL 222 (308)
Q Consensus 207 llEKQADLIrYLkehN 222 (308)
=+.|||+||+-|||..
T Consensus 27 ~ikqqaeliqllkel~ 42 (46)
T PF14142_consen 27 KIKQQAELIQLLKELK 42 (46)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6789999999999853
No 68
>PF07099 DUF1361: Protein of unknown function (DUF1361); InterPro: IPR009793 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
Probab=30.83 E-value=95 Score=27.57 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC--Ccchh
Q 021742 153 LIEAICAASFMSVYIGYVHQYNSLNS--QPDVM 183 (308)
Q Consensus 153 ~lElv~~l~~li~YivkV~rFNk~kp--~PDVl 183 (308)
.+=.++.+++.++|++|.-|+|+=+- +|+..
T Consensus 109 ~~~~~~~Lss~GIYlGRflR~NSWDi~~~P~~l 141 (168)
T PF07099_consen 109 FIILISFLSSFGIYLGRFLRLNSWDILTNPQSL 141 (168)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhHHhCCHHHH
Confidence 34456777888999999999999654 45443
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.73 E-value=2.8e+02 Score=26.63 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=19.8
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 021742 257 AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (308)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (308)
++++.|+++|.-|++.++.+....+..|++=+-++.
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666655555554444433
No 70
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=30.64 E-value=4.7e+02 Score=25.68 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCC
Q 021742 213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGS 246 (308)
Q Consensus 213 DLIrYLkehNa~LskriL~Lq~~l~kye~~~~gs 246 (308)
..++|+.+....+.+++-..+.++.+|++..+-.
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~ 204 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQEKGIV 204 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3478999999999999999999999999985543
No 71
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.48 E-value=67 Score=31.32 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=16.8
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 021742 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (308)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (308)
||+.+..|..++..|++......++-+.+..
T Consensus 65 eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 65 ELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666555555555444433
No 72
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.42 E-value=3.8e+02 Score=23.89 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=18.5
Q ss_pred hHHhhhHHHHHhHHHHHHHHHhhh
Q 021742 261 QELRTLSAEMNQLQSELRLARSFV 284 (308)
Q Consensus 261 qelRa~~Ae~~q~~~el~~ar~li 284 (308)
+-+++++.|+.+|+++|..-|-..
T Consensus 89 ~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 89 SKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999998887666543
No 73
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=30.33 E-value=2.5e+02 Score=21.46 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=42.6
Q ss_pred HHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhc------hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 021742 219 RENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAAR------DQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (308)
Q Consensus 219 kehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r------~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (308)
++.......++-.|+.....|...-.+...+|++..+...+ ++.+.....+++.++.|+..+|..+-+...+..
T Consensus 11 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 11 QQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778888888888865544443355554443332 234445556666666666666666655555544
Q ss_pred HHHhh
Q 021742 293 RVRNT 297 (308)
Q Consensus 293 ~~r~~ 297 (308)
-+..+
T Consensus 91 ~~e~L 95 (123)
T PF02050_consen 91 KLEKL 95 (123)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 74
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.29 E-value=1.2e+02 Score=25.37 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=14.7
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHh
Q 021742 213 ALLQYQRENLHFLSEEILRLQECL 236 (308)
Q Consensus 213 DLIrYLkehNa~LskriL~Lq~~l 236 (308)
-.|+||-.-...|++.+-.|++.+
T Consensus 66 l~ieYLl~~q~~L~~~~~~l~~~~ 89 (118)
T PF13815_consen 66 LSIEYLLHCQEYLSSQLEQLEERL 89 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356676666666666666665555
No 75
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.27 E-value=2.3e+02 Score=24.73 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHh
Q 021742 225 LSEEILRLQECL 236 (308)
Q Consensus 225 LskriL~Lq~~l 236 (308)
+.+++-.++.++
T Consensus 100 l~~~~~~~~~~l 111 (191)
T PF04156_consen 100 LQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 76
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.64 E-value=2.2e+02 Score=28.63 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=31.8
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhc
Q 021742 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTN 298 (308)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n 298 (308)
|.|+..++++.++.+.+.+-.-+.||..++.+|-...
T Consensus 274 eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeL 310 (359)
T PF10498_consen 274 EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEEL 310 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999998888875443
No 77
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=29.14 E-value=1.5e+02 Score=25.51 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=17.1
Q ss_pred CCcchhhcccCCCC---CCC----CCCCccccCCCchhHhHHHHHHHHHHHhHHhhHHH-------HHHHHHhhhhcccC
Q 021742 178 SQPDVMKSLYSPLQ---PSS----SLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEI-------LRLQECLSKYEQSD 243 (308)
Q Consensus 178 p~PDVl~ee~s~~~---ps~----s~~E~Gfrd~g~llEKQADLIrYLkehNa~Lskri-------L~Lq~~l~kye~~~ 243 (308)
|||.+-...|-.+. |.+ ..-=+||.|-..=+++|.+.+..+++....+.+++ +..+.++.+.++.
T Consensus 2 ~P~~~d~~~W~~A~~~nPdP~~~~Pv~i~GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r- 80 (141)
T PF13874_consen 2 PPPGIDEELWEQALRDNPDPSRLIPVPIIGFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRR- 80 (141)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCCCCHHHHHHHHHHCcCCcCeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-
Confidence 57777777775422 211 01126777655544555555555544444444443 4444444444444
Q ss_pred CCCCchhhhHhhh
Q 021742 244 DGSTPQVDLAHLL 256 (308)
Q Consensus 244 ~gst~qvdl~h~l 256 (308)
++.|.|.+
T Consensus 81 -----~~~L~hR~ 88 (141)
T PF13874_consen 81 -----HQELSHRL 88 (141)
T ss_dssp -----HHHHHHHH
T ss_pred -----HHHHHHHH
Confidence 45555543
No 78
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=29.11 E-value=2.5e+02 Score=30.10 Aligned_cols=79 Identities=29% Similarity=0.328 Sum_probs=39.2
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhh-hHhhhhhchh--------------HHhhhHHHHH
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVD-LAHLLAARDQ--------------ELRTLSAEMN 271 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvd-l~h~la~r~q--------------elRa~~Ae~~ 271 (308)
+++..+.=..-+......|..++=.|...+-|=++...|.--++| .-+.|+.=+. |+.-|.+|-.
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 565554443334444455555555554444443333334433343 1222222222 5556677777
Q ss_pred hHHHHHHHHHhhhh
Q 021742 272 QLQSELRLARSFVA 285 (308)
Q Consensus 272 q~~~el~~ar~li~ 285 (308)
++..+|..+|+.++
T Consensus 180 rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 180 RLREELARARKQLD 193 (546)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777776554
No 79
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.02 E-value=99 Score=28.67 Aligned_cols=6 Identities=17% Similarity=0.545 Sum_probs=2.3
Q ss_pred HHhhcc
Q 021742 294 VRNTNN 299 (308)
Q Consensus 294 ~r~~n~ 299 (308)
++..|+
T Consensus 137 L~~~n~ 142 (206)
T PRK10884 137 LKEENQ 142 (206)
T ss_pred HHHHHH
Confidence 343333
No 80
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=28.95 E-value=5.6e+02 Score=25.56 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=27.1
Q ss_pred hhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhc
Q 021742 264 RTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTN 298 (308)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n 298 (308)
+.|+||+.-++.--.-+-+++.|-+.|+..+|..|
T Consensus 272 ~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 272 RQLQAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 46777777777777788888888888888887654
No 81
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.87 E-value=5e+02 Score=25.17 Aligned_cols=71 Identities=27% Similarity=0.274 Sum_probs=34.6
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhh---HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 021742 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDL---AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (308)
Q Consensus 217 YLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl---~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (308)
=+++....|.+++=.|++.... -+..++..| -.-|+.-+.++.+..+++++++.|+..-..-|++...+++
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e-----~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~ 254 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEE-----IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQ 254 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666543 233444433 2223333334444444555555555555555544444433
No 82
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=28.83 E-value=2.9e+02 Score=23.69 Aligned_cols=77 Identities=22% Similarity=0.410 Sum_probs=47.2
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhc-h-hHHhhhH------HHHHhHHHHHHHHHhhhhHhHH
Q 021742 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAAR-D-QELRTLS------AEMNQLQSELRLARSFVAEREA 289 (308)
Q Consensus 218 LkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r-~-qelRa~~------Ae~~q~~~el~~ar~li~er~~ 289 (308)
..++...|..+.-...+.++.|.+-..|- ++...-+|.+ | +-+||+. .+..|-.++....-++|+|+..
T Consensus 18 ~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~---~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~ 94 (120)
T PF14931_consen 18 KADQTQELKEECKEFVEKISEFQKIVKGF---IEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKM 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776663333 3333333333 1 2345554 3334444455667889999999
Q ss_pred HHHHHHhh
Q 021742 290 EVLRVRNT 297 (308)
Q Consensus 290 e~~~~r~~ 297 (308)
|+.|+|..
T Consensus 95 eLERl~~E 102 (120)
T PF14931_consen 95 ELERLRSE 102 (120)
T ss_pred HHHHHHHH
Confidence 99999863
No 83
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=28.32 E-value=4.4e+02 Score=23.71 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=31.6
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhcccc
Q 021742 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQV 301 (308)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~ 301 (308)
+++.+.++..++++.+..+...|+.....|.+.+..-+-|
T Consensus 87 ~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~ 126 (158)
T PF09486_consen 87 RVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVC 126 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 6678888888888888888888888888888776554433
No 84
>PRK09039 hypothetical protein; Validated
Probab=28.31 E-value=4.6e+02 Score=25.90 Aligned_cols=59 Identities=29% Similarity=0.405 Sum_probs=30.3
Q ss_pred HhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 021742 221 NLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (308)
Q Consensus 221 hNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (308)
....|+++|-.|..++ -.+...|++=+++-+...+.+..++++|..| |++|..|+.+.|
T Consensus 138 ~V~~L~~qI~aLr~Ql-------------a~le~~L~~ae~~~~~~~~~i~~L~~~L~~a---~~~~~~~l~~~~ 196 (343)
T PRK09039 138 QVELLNQQIAALRRQL-------------AALEAALDASEKRDRESQAKIADLGRRLNVA---LAQRVQELNRYR 196 (343)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhH
Confidence 3445555555555553 2334445555555555566666666666554 334455554443
No 85
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=28.03 E-value=4.1e+02 Score=23.23 Aligned_cols=89 Identities=24% Similarity=0.293 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh---------hhHhhhhhchhHHh----------------
Q 021742 210 EQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV---------DLAHLLAARDQELR---------------- 264 (308)
Q Consensus 210 KQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qv---------dl~h~la~r~qelR---------------- 264 (308)
++-+.|.=++--|..|-..+-.++.++.+.+...+|-+.-. .+..-++.|..||-
T Consensus 3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ 82 (177)
T PF13870_consen 3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHV 82 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777788888888888888888888866665322 34445666766662
Q ss_pred -----hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhc
Q 021742 265 -----TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTN 298 (308)
Q Consensus 265 -----a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n 298 (308)
.+.+|...+..|+......+++-+.++.++....
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554443
No 86
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.99 E-value=2.1e+02 Score=24.54 Aligned_cols=49 Identities=24% Similarity=0.175 Sum_probs=26.3
Q ss_pred hhHhhhhhchhHHh-------hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhcc
Q 021742 251 DLAHLLAARDQELR-------TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNN 299 (308)
Q Consensus 251 dl~h~la~r~qelR-------a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ 299 (308)
-+..-+..||.|+- .+.++.+++..|+-..-...++-.+...++....+
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~ 75 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQ 75 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777664 55555555555555555555554444444443333
No 87
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=27.62 E-value=4.2e+02 Score=24.33 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhccc------CCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHH
Q 021742 227 EEILRLQECLSKYEQS------DDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELR 278 (308)
Q Consensus 227 kriL~Lq~~l~kye~~------~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~ 278 (308)
+++-.++.++.+++.. .....|-.+|.-.|.....+|-.+.+.+++..+++.
T Consensus 52 ~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~ 109 (240)
T PF12795_consen 52 KEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLI 109 (240)
T ss_pred HHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999998665 123455557777777777666555555555555544
No 88
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=27.58 E-value=3.4e+02 Score=27.20 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHhhhhcccCCC-------CCchh-hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhh
Q 021742 224 FLSEEILRLQECLSKYEQSDDG-------STPQV-DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVA 285 (308)
Q Consensus 224 ~LskriL~Lq~~l~kye~~~~g-------st~qv-dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~ 285 (308)
.|-++|-.++.++.+...+..| .+|.. ++...++.-+.++.++.++.+.++.++...+..++
T Consensus 279 ~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 279 ATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777766555433222 12221 35555666666666777766666666655555544
No 89
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=27.42 E-value=1.2e+02 Score=26.92 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhHHhhHHH----HHHHHHhhhhccc----CCCCCchhhhHhhhhhc
Q 021742 211 QMALLQYQRENLHFLSEEI----LRLQECLSKYEQS----DDGSTPQVDLAHLLAAR 259 (308)
Q Consensus 211 QADLIrYLkehNa~Lskri----L~Lq~~l~kye~~----~~gst~qvdl~h~la~r 259 (308)
=..+++|+++|...+.++. ..+.+.+++|..+ ..+.+++.|+-|+|..=
T Consensus 29 i~~ll~yi~~~l~~i~~~w~~~~~~~~~~l~~~~~~l~~~~~~~~~~~el~~lLltG 85 (210)
T PF12896_consen 29 IQSLLRYIKDTLDAIQEEWEEALQEFDRKLTNLADELQEKGGEGSLQDELLDLLLTG 85 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhc
Confidence 3468899999999998875 3446667777754 34567788888777653
No 90
>PF11352 DUF3155: Protein of unknown function (DUF3155); InterPro: IPR021498 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.81 E-value=22 Score=29.29 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=8.8
Q ss_pred cccccccccCC
Q 021742 298 NNQVFSSSIFL 308 (308)
Q Consensus 298 n~q~~~e~~~~ 308 (308)
--||+|||-||
T Consensus 73 ~AqY~EEnhFl 83 (90)
T PF11352_consen 73 GAQYVEENHFL 83 (90)
T ss_pred hhhhhhhcccc
Confidence 35899999886
No 91
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.77 E-value=1.1e+02 Score=24.86 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=29.2
Q ss_pred CCchhhh-HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHh
Q 021742 246 STPQVDL-AHLLAARDQELRTLSAEMNQLQSELRLARSFVAER 287 (308)
Q Consensus 246 st~qvdl-~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er 287 (308)
-+|..|+ +|+...+.++.-.|.+.++.++.|-..-..-|.+.
T Consensus 64 l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 64 LTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred CChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677788 88888888777777777777777766554444443
No 92
>PF10251 PEN-2: Presenilin enhancer-2 subunit of gamma secretase; InterPro: IPR019379 This entry is a short, 101 peptide protein, which is the smallest subunit of the gamma-secretase aspartyl protease complex. It catalyses the intra-membrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. Presenilin enhancer-2 (PEN-2) adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space. The C-terminal domain maintains PS stability within the complex [].
Probab=26.73 E-value=43 Score=27.85 Aligned_cols=21 Identities=24% Similarity=0.437 Sum_probs=18.1
Q ss_pred cccchhhHHHHHHHHHHHHHH
Q 021742 36 SHSIFGSVVYCFVLAGYAILA 56 (308)
Q Consensus 36 ~~~~~g~~~y~~ll~~~A~~~ 56 (308)
.+|.+|.+++.++|++|+++-
T Consensus 53 i~SaiG~~vw~v~l~~W~~~F 73 (94)
T PF10251_consen 53 IRSAIGFLVWTVVLISWILIF 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998764
No 93
>PRK10404 hypothetical protein; Provisional
Probab=26.63 E-value=1.4e+02 Score=24.86 Aligned_cols=42 Identities=5% Similarity=0.042 Sum_probs=21.1
Q ss_pred hHHHHHhHHHHHHHHHhhhhHhHHHHHH-HHh---hcccccccccC
Q 021742 266 LSAEMNQLQSELRLARSFVAEREAEVLR-VRN---TNNQVFSSSIF 307 (308)
Q Consensus 266 ~~Ae~~q~~~el~~ar~li~er~~e~~~-~r~---~n~q~~~e~~~ 307 (308)
...-.+++++-|+.+|.-+.+-..++.. .|. .=+.||-||.+
T Consensus 36 ~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw 81 (101)
T PRK10404 36 YVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPW 81 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 3344455666666666544433332211 222 23678888754
No 94
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=26.54 E-value=1.1e+02 Score=28.03 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=37.7
Q ss_pred CccCcccchhhHHHHHH--HHHHHHHHhhhhhhcccc-c-ccchhHHH--HHHHHHHHHHH
Q 021742 32 GHRKSHSIFGSVVYCFV--LAGYAILAAGTTWIFHPI-H-YLIPPLLC--SCGVILLALTG 86 (308)
Q Consensus 32 ~~r~~~~~~g~~~y~~l--l~~~A~~~~~~~wi~~~~-~-~~~~~ll~--~~~v~LWllt~ 86 (308)
=+||-++...++++.+. .+||.+-.+..+|++..+ | ...|..+. ..-+.||+...
T Consensus 132 l~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~s~ 192 (194)
T PF11833_consen 132 LNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLVSL 192 (194)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 36788888888887765 779999899999997744 2 34444444 33467777654
No 95
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.36 E-value=3.9e+02 Score=22.40 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=26.1
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 021742 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (308)
Q Consensus 208 lEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~ 242 (308)
+++....++.+++....|..++-.|...+.+|+..
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~ 42 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDTA 42 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777788888888888888887777665
No 96
>COG5346 Predicted membrane protein [Function unknown]
Probab=26.15 E-value=1.6e+02 Score=26.13 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchhhcccCCCCCCCCCCCccccCCCchhHhHHHHHHHHHHHhHHhhHHHHHHHHH
Q 021742 160 ASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQEC 235 (308)
Q Consensus 160 l~~li~YivkV~rFNk~kp~PDVl~ee~s~~~ps~s~~E~Gfrd~g~llEKQADLIrYLkehNa~LskriL~Lq~~ 235 (308)
.|-...| .++|..-=||||++.+- ..-+|+ =+|.=+.|-+-=+.|-|..-++.+..|.+
T Consensus 24 e~~~n~~---~k~F~~~LPpp~~l~qY-nsI~pn-------------t~~rimaMAekEQahrH~~~~k~~~~q~r 82 (136)
T COG5346 24 EPDNNFY---RKKFEHILPPPDLLSQY-NSIYPN-------------TLQRIMAMAEKEQAHRHAIDLKNLKIQRR 82 (136)
T ss_pred cHHHHHH---HHHhcccCCCHHHHHHH-HhhcCC-------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444 46788899999998553 323443 35666778788888999999998888888
No 97
>PRK06008 flgL flagellar hook-associated protein FlgL; Validated
Probab=26.00 E-value=4.7e+02 Score=25.41 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=33.6
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchh
Q 021742 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ 261 (308)
Q Consensus 217 YLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~q 261 (308)
-++.++..+..++-++|++++-.++.+..+...++...++.-|.+
T Consensus 14 ~~~~~l~~~~~~l~~lq~qlsTGk~~d~~s~~~~~~~~~~~l~~~ 58 (348)
T PRK06008 14 ALRLTIAKLQAELSKAQTEATTGRYADVGLSLGSKTARSVSLRRE 58 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccccHHHHHHHHHHHH
Confidence 356778888899999999999998887766666766555554443
No 98
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.95 E-value=4.1e+02 Score=24.23 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=19.1
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 021742 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (308)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (308)
.+..+..++++++.++...|..++++..+++.-+
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666655555555444
No 99
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=25.22 E-value=79 Score=27.38 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=45.1
Q ss_pred hhhhccCcccCccCcccchhhHH-HHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 021742 22 LDILHEAPLLGHRKSHSIFGSVV-YCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIR 100 (308)
Q Consensus 22 ~d~~~e~p~~~~r~~~~~~g~~~-y~~ll~~~A~~~~~~~wi~~~~~~~~~~ll~~~~v~LWllt~l~d~yv~~~H~k~R 100 (308)
.+++.+. |..|.....=.=+ -|.+-++-|+++...++ ..|+|...+ ++..|=++.+++.+++.-|..+..+..-
T Consensus 11 ~~~l~~~---gy~e~~~l~d~kL~lg~~a~~iA~~a~~~d~-~~~f~~s~~-~~~~~v~~YfiLs~il~~~~~~~ek~~~ 85 (162)
T PF06703_consen 11 PEYLTEL---GYKESHTLTDIKLALGYLAVIIAGFAFFYDY-KYPFPESKP-YLIICVILYFILSGILTLYSYFVEKDIF 85 (162)
T ss_pred HHHHhhC---CceeEEEEEcHHHHHHHHHHHHHHHHHHhhh-cCCCCccHH-HHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 4455555 7777766543321 12222233333333333 347777776 8888999999999999888877654433
Q ss_pred h
Q 021742 101 L 101 (308)
Q Consensus 101 l 101 (308)
.
T Consensus 86 ~ 86 (162)
T PF06703_consen 86 Y 86 (162)
T ss_pred E
Confidence 3
No 100
>PTZ00421 coronin; Provisional
Probab=25.11 E-value=1.2e+02 Score=31.39 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=30.4
Q ss_pred chhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 021742 259 RDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (308)
Q Consensus 259 r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (308)
|-..|-+|+.++.+-|.|++++|-.+.|++++.-++
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
T PTZ00421 451 RLGRLQALSEKLRTQHEEIKRCREALQKKESIVMET 486 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456999999999999999999999999987654
No 101
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=25.01 E-value=6.5e+02 Score=25.31 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhcc-cccccHHHHHHHHHHHHHHH
Q 021742 80 ILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPH-ISILSISTLLRIIMLIEAIC 158 (308)
Q Consensus 80 ~LWllt~l~d~yv~~~H~k~Rl~GYl~Fyr~Tr~lkrlPl~I~S~Gna~LLli~~~~~~-~~~Ls~~~ilriil~lElv~ 158 (308)
.+.++.|++-..++..+.|.+-+ .-..+.|..+.++|+.....|- .+.+.+..+. .+-++.
T Consensus 125 ~~~i~IG~l~~~~~~~~~k~~~~--------------~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy----~itli~ 186 (367)
T PF09971_consen 125 QFFIIIGFLALILKRIYKKIKFN--------------IEYLAFSLVSLIILIASIVLPFFASVMNPTRLY----QITLIF 186 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh--------------HHHHHHHHHHHHHHHHHHhccchhhhcCHHHHH----HHHHHH
Confidence 45667777888888887776622 3345667777666666555554 4456666665 344555
Q ss_pred HHHHHHH-HHHHHHHhcCC
Q 021742 159 AASFMSV-YIGYVHQYNSL 176 (308)
Q Consensus 159 ~l~~li~-YivkV~rFNk~ 176 (308)
.+|++++ ++.-++-+||-
T Consensus 187 LAPf~iiG~~~~~~~i~k~ 205 (367)
T PF09971_consen 187 LAPFFIIGGITLFKLINKL 205 (367)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6666655 43333333333
No 102
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=24.90 E-value=2.8e+02 Score=29.25 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=32.0
Q ss_pred HHhhhHHHHHhHHHHHHHHHhh---hhHhHH---HHHHHHhhcccccc
Q 021742 262 ELRTLSAEMNQLQSELRLARSF---VAEREA---EVLRVRNTNNQVFS 303 (308)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~l---i~er~~---e~~~~r~~n~q~~~ 303 (308)
|+-.-.=|+.++|.||...|.. ++||+. |||.+|.-=+-|++
T Consensus 196 evl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~~~~ 243 (488)
T PF06548_consen 196 EVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQYYTD 243 (488)
T ss_pred HHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHHhccc
Confidence 5555566899999999999999 999986 77777765444444
No 103
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=24.79 E-value=2.2e+02 Score=23.81 Aligned_cols=80 Identities=30% Similarity=0.413 Sum_probs=42.0
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCC--CchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhh
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGS--TPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFV 284 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gs--t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li 284 (308)
++|.=|+++ |+..+.|-++==+|..+|+||+...... ++...-...--+|+ + .++-||++||-.|
T Consensus 12 FvEEEa~Ll---RRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~-------~---~l~~eLk~a~~qi 78 (96)
T PF11365_consen 12 FVEEEAELL---RRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGRE-------A---ELQEELKLAREQI 78 (96)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCcccc-------H---HHHHHHHHHHHHH
Confidence 566666654 3455555555556677888888752111 11110000001121 1 3567888888777
Q ss_pred hHhHHHHHHHHhhcc
Q 021742 285 AEREAEVLRVRNTNN 299 (308)
Q Consensus 285 ~er~~e~~~~r~~n~ 299 (308)
.+=-..+-.+-..|+
T Consensus 79 ~~Ls~kv~eLq~ENR 93 (96)
T PF11365_consen 79 NELSGKVMELQYENR 93 (96)
T ss_pred HHHhhHHHHHhhccc
Confidence 776666666655554
No 104
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=24.49 E-value=2e+02 Score=22.03 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=21.1
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHH
Q 021742 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (308)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (308)
++-+|.+..+|+++|+...|+.+.-=..|+.|
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777766555555544
No 105
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=24.09 E-value=2.6e+02 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHhcc
Q 021742 122 TAYGTAAMLLVIVWRPH 138 (308)
Q Consensus 122 ~S~Gna~LLli~~~~~~ 138 (308)
+++|-+.+|.+.+....
T Consensus 27 v~l~it~lL~~~~~~~~ 43 (237)
T PF02932_consen 27 VTLGITTLLAMTVFLLM 43 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHhh
Confidence 56677776666654443
No 106
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.62 E-value=1.8e+02 Score=21.34 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=25.3
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhh
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSK 238 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~k 238 (308)
..|+=.+|.+-..+|.+.+-++.+..+...++
T Consensus 16 ~aerI~~mae~eq~hR~~~e~~~l~~~~~~~~ 47 (50)
T PF10097_consen 16 AAERIFAMAEKEQEHRHELEKKALKSEIRRSK 47 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788889999999999888877654
No 107
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=23.41 E-value=50 Score=33.81 Aligned_cols=28 Identities=36% Similarity=0.336 Sum_probs=19.4
Q ss_pred HhhhhcccCCCCCchhhhHhhhhhchhH
Q 021742 235 CLSKYEQSDDGSTPQVDLAHLLAARDQE 262 (308)
Q Consensus 235 ~l~kye~~~~gst~qvdl~h~la~r~qe 262 (308)
.++.-.|+-+....+.|||||||||.-=
T Consensus 248 ~~~~~~rei~~~K~~~dvahLLaArsdL 275 (465)
T KOG3973|consen 248 ILSARVREIGRVKANSDVAHLLAARSDL 275 (465)
T ss_pred HHHHHHHHhccccchhHHHHHHHhhhhH
Confidence 3444455555556688999999999753
No 108
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.40 E-value=3.5e+02 Score=30.35 Aligned_cols=82 Identities=23% Similarity=0.182 Sum_probs=45.8
Q ss_pred HHHHHHHHHHH-------hHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhH-HhhhHHHHHhHHHHHHHHHh
Q 021742 211 QMALLQYQREN-------LHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQE-LRTLSAEMNQLQSELRLARS 282 (308)
Q Consensus 211 QADLIrYLkeh-------Na~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qe-lRa~~Ae~~q~~~el~~ar~ 282 (308)
|..+|+.||-. ..++++.|-.|+++.+|-++.-+|-+.-- .--|| +-.+.||+.-...+...-|+
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~E-------k~~~E~I~k~~ae~~rq~~~~~~sr~ 544 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETE-------KLLQETIEKHQAELTRQKDYYSNSRA 544 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34677777633 45677777788888777777644332100 00011 12455555555555666666
Q ss_pred hhhHhHHHHHHHHhhcc
Q 021742 283 FVAEREAEVLRVRNTNN 299 (308)
Q Consensus 283 li~er~~e~~~~r~~n~ 299 (308)
++++.++....+..+||
T Consensus 545 ~~~~le~~~~a~qat~d 561 (961)
T KOG4673|consen 545 LAAALEAQALAEQATND 561 (961)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 66666666555555554
No 109
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=22.97 E-value=2.8e+02 Score=25.19 Aligned_cols=22 Identities=0% Similarity=0.232 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 021742 154 IEAICAASFMSVYIGYVHQYNS 175 (308)
Q Consensus 154 lElv~~l~~li~YivkV~rFNk 175 (308)
+=.++++|..++|++.+..|.+
T Consensus 144 ~~t~i~~~~~li~~~~~~~~wr 165 (175)
T PF07856_consen 144 AITAILVPVLLIFVVFIQHFWR 165 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777766655
No 110
>PHA02246 hypothetical protein
Probab=22.83 E-value=76 Score=29.24 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=53.4
Q ss_pred HHHHHhhcccccchhhhhHHHHHHHHHHHHhcc----cc--------cccHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 021742 106 SFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPH----IS--------ILSISTLL--RIIMLIEAICAASFMSVYIGYVH 171 (308)
Q Consensus 106 ~Fyr~Tr~lkrlPl~I~S~Gna~LLli~~~~~~----~~--------~Ls~~~il--riil~lElv~~l~~li~YivkV~ 171 (308)
.||.-.+- -...|+|+|.|--..|-+.|+.-- .. .+|+-+.+ ...-.-|.+.....+..|+-++.
T Consensus 51 SfyNlL~T-~~~~fqi~svg~nl~lgivcLlv~~~rkkd~f~~~fiiifSLllfll~~~~evtQtVat~tIiLaYi~QII 129 (192)
T PHA02246 51 SFYNLLLT-DASVFQIVSVGLNLTLGIVCLLVASYRKKDYFSIPFIIVFSLLLFLLSDFTALTQTVATITIILAYVTQIT 129 (192)
T ss_pred HHHHHHhc-CCceEEEeeeehhhhhhhhheeeehhhccccccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34544433 344789999998888777775222 00 12221111 01123467777888899999999
Q ss_pred HhcCCCCCcchhhcccC
Q 021742 172 QYNSLNSQPDVMKSLYS 188 (308)
Q Consensus 172 rFNk~kp~PDVl~ee~s 188 (308)
+|=|.|..-|.-...|.
T Consensus 130 qfyKTK~SEg~n~~l~l 146 (192)
T PHA02246 130 TFYKTKSAEGTNRFLFL 146 (192)
T ss_pred HHhhhcccCCCChhHHH
Confidence 99999999998888774
No 111
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=22.28 E-value=6.6e+02 Score=23.58 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=29.5
Q ss_pred hhhHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhc
Q 021742 101 LQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRP 137 (308)
Q Consensus 101 l~GYl~Fyr~Tr~lkrlPl~I~S~Gna~LLli~~~~~ 137 (308)
.+|+..+.+.+.--+|+|+-.-=.|+..+-++.++..
T Consensus 117 l~Gf~ayl~~Lts~erlp~s~~ff~t~l~Tiy~~~k~ 153 (201)
T COG5102 117 LLGFRAYLEGLTSKERLPHSSWFFGTTLLTIYVVLKY 153 (201)
T ss_pred HHhHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHh
Confidence 5688888888888899998877778877777777665
No 112
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.09 E-value=77 Score=25.59 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=20.0
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhcccccccccCC
Q 021742 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQVFSSSIFL 308 (308)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~~e~~~~ 308 (308)
.+-.|...+|.-|..-. ..|..|+..|++.-.||.||
T Consensus 20 ~Li~ei~~LQ~sL~~L~-------~Rve~Vk~E~~kL~~EN~~L 56 (80)
T PF10224_consen 20 ELIQEILELQDSLEALS-------DRVEEVKEENEKLESENEYL 56 (80)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555444 44555666666666666654
No 113
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=21.76 E-value=1.8e+02 Score=22.68 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=18.9
Q ss_pred ccchhhhhhhccCcccCccCcccchhhHHHHHHHHHHHHHHhhhh
Q 021742 16 EENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60 (308)
Q Consensus 16 ~~~~~f~d~~~e~p~~~~r~~~~~~g~~~y~~ll~~~A~~~~~~~ 60 (308)
+||..|-.-+...+-..++..+.+.|.+ .+++|.++++++..
T Consensus 20 ~~DP~fa~~l~~~~~~~~~~r~~~~~~~---~~v~gl~llv~G~~ 61 (82)
T PF11239_consen 20 ADDPRFAARLRSGRPRRPSRRRRVLGVL---LVVVGLALLVAGVV 61 (82)
T ss_pred hcCcHHHHHhccCCCCCCchhHHHHHHH---HHHHHHHHHHHHHH
Confidence 3455565555443322222223333333 45566555555543
No 114
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.69 E-value=1.4e+02 Score=27.42 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=32.9
Q ss_pred hhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhccccc
Q 021742 255 LLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQVF 302 (308)
Q Consensus 255 ~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~ 302 (308)
.....|.++..+...+-++|.+.......-.+.|+||.++.+-.++..
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~ 172 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALK 172 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666677777777777777777777788888888766555443
No 115
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.60 E-value=8.9e+02 Score=26.90 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=37.3
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 021742 215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (308)
Q Consensus 215 IrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (308)
|+=||+-.+-.|.|+..|+....|-.++ . +.=.+..-++..++-|-|.||.+-...|..-+....++
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~se---------I----~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSE---------I----EEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH---------H----HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 4456666777788888877765443332 0 00011112334444444555555555555555555556
Q ss_pred Hhhcc
Q 021742 295 RNTNN 299 (308)
Q Consensus 295 r~~n~ 299 (308)
|..||
T Consensus 148 ~~~n~ 152 (907)
T KOG2264|consen 148 RETNN 152 (907)
T ss_pred HhhcC
Confidence 66665
No 116
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.58 E-value=4.2e+02 Score=23.23 Aligned_cols=59 Identities=34% Similarity=0.513 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHh----hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh
Q 021742 228 EILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR----TLSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (308)
Q Consensus 228 riL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelR----a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (308)
++=+|++-...|.+..-+..|++-. +++.-+|.| +.-+-++.+++|+ ..||+||..+|.
T Consensus 53 EL~~Ls~LK~~y~~~~~~~~~~~~~---l~a~~~e~qsli~~yE~~~~kLe~e~-------~~Kdsei~~Lr~ 115 (131)
T PF04859_consen 53 ELRRLSELKRRYRKKQSDPSPQVAR---LAAEIQEQQSLIKTYEIVVKKLEAEL-------RAKDSEIDRLRE 115 (131)
T ss_pred HHHHHHHHHHHHHcCCCCCCccccc---cccchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3445566666677775444566532 455556555 4444455555554 456666665553
No 117
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.54 E-value=4.4e+02 Score=22.13 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=40.6
Q ss_pred hhHHH----HHHHHHHHHHHhhhhhh--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 021742 41 GSVVY----CFVLAGYAILAAGTTWI--FHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQ 102 (308)
Q Consensus 41 g~~~y----~~ll~~~A~~~~~~~wi--~~~~~~~~~~ll~~~~v~LWllt~l~d~yv~~~H~k~Rl~ 102 (308)
|||-| ++++++|.++-+..+.- |=|.|-....+..|+-+++-.-..++-+=-+..+.+.|..
T Consensus 2 GS~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~IlmsQNRq~~~dr~ra~ 69 (108)
T PF06210_consen 2 GSWTFIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILMSQNRQAARDRLRAE 69 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 55544 45566777766655542 3344555556777888888888888887777776666654
No 118
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.48 E-value=5.1e+02 Score=21.99 Aligned_cols=6 Identities=50% Similarity=0.279 Sum_probs=2.7
Q ss_pred CCCCCC
Q 021742 188 SPLQPS 193 (308)
Q Consensus 188 s~~~ps 193 (308)
+.++|+
T Consensus 13 s~G~~~ 18 (151)
T PF11559_consen 13 SRGYPS 18 (151)
T ss_pred HCCCCC
Confidence 344444
No 119
>PF15463 ECM11: Extracellular mutant protein 11
Probab=21.43 E-value=83 Score=27.08 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=33.2
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~ 242 (308)
++|++..++.-|++.=..+++.+-.+..++++|+..
T Consensus 81 ~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~ea 116 (139)
T PF15463_consen 81 FLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEA 116 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887665
No 120
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.31 E-value=2.5e+02 Score=31.56 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhh-------hhH
Q 021742 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSF-------VAE 286 (308)
Q Consensus 214 LIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~l-------i~e 286 (308)
.|+-|||-|.+|.+.+..=-.++-+-++--|--|.-|-+ |+...-++|..+|--|..|+-+ +..
T Consensus 463 ~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~---------ev~eal~~~k~~q~kLe~sekEN~iL~itlrQ 533 (861)
T PF15254_consen 463 VIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKI---------EVEEALVNVKSLQFKLEASEKENQILGITLRQ 533 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHH
Q ss_pred hHHHHHHHHhhcc
Q 021742 287 REAEVLRVRNTNN 299 (308)
Q Consensus 287 r~~e~~~~r~~n~ 299 (308)
||+||-|+|..++
T Consensus 534 rDaEi~RL~eLtR 546 (861)
T PF15254_consen 534 RDAEIERLRELTR 546 (861)
T ss_pred HHHHHHHHHHHHH
No 121
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.15 E-value=5.6e+02 Score=23.95 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHhhcccccc
Q 021742 274 QSELRLARSFVAEREAEVLRVRNTNNQVFS 303 (308)
Q Consensus 274 ~~el~~ar~li~er~~e~~~~r~~n~q~~~ 303 (308)
..|++.-.+-|+++++|+..+|..-.++..
T Consensus 254 ~~~~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 254 DEEREEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 344444555666666666666665544443
No 122
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=21.07 E-value=1.3e+02 Score=25.60 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHhhhhHhHHHHHHHHhhccccccc
Q 021742 269 EMNQLQSELRLARSFVAEREAEVLRVRNTNNQVFSS 304 (308)
Q Consensus 269 e~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~~e 304 (308)
+.++++.+++.+...|.......++|-..+.||-.|
T Consensus 8 ~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkE 43 (125)
T PF03245_consen 8 QRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKE 43 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444544444444454444444433
No 123
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=21.02 E-value=2e+02 Score=29.43 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=30.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHHHHHHHH
Q 021742 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIF 88 (308)
Q Consensus 39 ~~g~~~y~~ll~~~A~~~~~~~wi~~~~~~~~~~ll~~~~v~LWllt~l~ 88 (308)
.+|.++-|+++++|+....+- |+ ..+|+++..+..+.|...+..
T Consensus 352 ~~~~~~~~l~~~s~~l~l~gw-wi-----P~ip~ll~l~~~~i~~~~~~~ 395 (400)
T COG4252 352 AVGLALAGLLLISYLLFLAGW-WI-----PLIPPLLALVGSGIWSTLFLK 395 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cc-----cchHHHHHHHHHHHHHHHHHH
Confidence 345555666667777776666 77 567888888888888776655
No 124
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=2.1e+02 Score=25.44 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=29.1
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhh
Q 021742 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (308)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (308)
.+|++-++|+.+.+++++..-++-|+.=+..+..++++
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~ 42 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTA 42 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999998888887777666666555543
No 125
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=20.66 E-value=1.3e+02 Score=26.26 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=22.4
Q ss_pred CcccCccCccc-----chhhHHHHHHHHHHHHHHh
Q 021742 28 APLLGHRKSHS-----IFGSVVYCFVLAGYAILAA 57 (308)
Q Consensus 28 ~p~~~~r~~~~-----~~g~~~y~~ll~~~A~~~~ 57 (308)
-||||-+.+|- ++|+++-.++|++-+.+.+
T Consensus 17 rPLFGE~~~r~riinliiG~vT~l~VLvtii~afv 51 (118)
T PF10856_consen 17 RPLFGETSARDRIINLIIGAVTSLFVLVTIISAFV 51 (118)
T ss_pred CcccCCCCcccEEEEeehHHHHHHHHHHHHhheEE
Confidence 59999998875 6788888888776544433
No 126
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.63 E-value=2.3e+02 Score=26.77 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=20.0
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 021742 257 AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (308)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (308)
.++.|.+=.+.-.++++|.|++.=|+.|+|-.-+++++.
T Consensus 50 ~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 50 NAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334443334455555555555555555555555555443
No 127
>PRK12704 phosphodiesterase; Provisional
Probab=20.32 E-value=5.2e+02 Score=27.13 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=21.7
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhccc
Q 021742 257 AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300 (308)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q 300 (308)
+.|+++|..-..++++-+.+|..=...+++++.++.+++....+
T Consensus 99 e~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~ 142 (520)
T PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444455555555555555565555544443
No 128
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=20.26 E-value=5.9e+02 Score=24.87 Aligned_cols=44 Identities=16% Similarity=-0.068 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhhhhcc-c----------ccccchhHHHHHHHHHHHHHHHHHHHH
Q 021742 49 LAGYAILAAGTTWIFH-P----------IHYLIPPLLCSCGVILLALTGIFQQYF 92 (308)
Q Consensus 49 l~~~A~~~~~~~wi~~-~----------~~~~~~~ll~~~~v~LWllt~l~d~yv 92 (308)
++..+++++.++|+.. | .-+++..+++..=++++++.+++-+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~Gyv~i~~~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~ 62 (409)
T TIGR00540 8 FLLLIAGIVAGPMIAGHQGYVLIETANRIIEMSITGLAIFFIIALAIIFAFEWGL 62 (409)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566777754 1 234444445544444444444433333
No 129
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.15 E-value=1.6e+02 Score=26.96 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=30.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCCCcc
Q 021742 139 ISILSISTLLRIIMLIEAICAASFMSVYIGYVHQ------YNSLNSQPD 181 (308)
Q Consensus 139 ~~~Ls~~~ilriil~lElv~~l~~li~YivkV~r------FNk~kp~PD 181 (308)
|+++|..++. |++++-+.++.+.+.+|..--|| ||++..|||
T Consensus 24 psffsthm~t-ILiaIvVliiiiivli~lcssRKkKaaAAi~eediQfi 71 (189)
T PF05568_consen 24 PSFFSTHMYT-ILIAIVVLIIIIIVLIYLCSSRKKKAAAAIEEEDIQFI 71 (189)
T ss_pred ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhccccc
Confidence 6777766666 77777777777777777766554 788877775
No 130
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=20.01 E-value=5.5e+02 Score=25.98 Aligned_cols=46 Identities=24% Similarity=0.441 Sum_probs=36.9
Q ss_pred hhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhh
Q 021742 237 SKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFV 284 (308)
Q Consensus 237 ~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li 284 (308)
.+|+.. -.+|--.++-||...=++|-++.-+++..+.+++.|.+-+
T Consensus 239 ~r~kd~--~p~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~l~~a~~~L 284 (377)
T PF14728_consen 239 TRFKDK--NPAPLDNLDTLLEGTYRQLIALADEIEELQANLKRAGASL 284 (377)
T ss_pred HHhccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 456544 4466668899999999999999999999999998887644
No 131
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=20.01 E-value=7.1e+02 Score=26.12 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=27.8
Q ss_pred HhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchh
Q 021742 221 NLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ 261 (308)
Q Consensus 221 hNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~q 261 (308)
+......++.++|++++-.+|-...+...+..+..+.-|.+
T Consensus 15 ~l~~~q~~l~~~q~QlSSGkri~~psDDP~~a~~~~~l~~~ 55 (523)
T PRK12717 15 NYQRNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQ 55 (523)
T ss_pred HHHHHHHHHHHHHHHHhccCccCCcccCHHHHHHHHHHHHH
Confidence 34444557777999999888887777777766655554443
Done!