Query 021742
Match_columns 308
No_of_seqs 72 out of 74
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 08:38:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdq_A Uncharacterized conserv 75.0 10 0.00035 32.4 7.8 55 223-281 14-68 (154)
2 1t6f_A Geminin; coiled-coil, c 45.6 14 0.00049 25.0 2.5 28 268-302 7-34 (37)
3 3nmd_A CGMP dependent protein 41.4 42 0.0014 25.7 4.9 44 251-301 23-66 (72)
4 3lay_A Zinc resistance-associa 38.2 1.4E+02 0.0048 25.8 8.4 66 207-285 68-137 (175)
5 1zxa_A CGMP-dependent protein 37.7 32 0.0011 25.9 3.7 34 251-284 15-48 (67)
6 1v54_K IHQ, cytochrome C oxida 34.4 21 0.00072 26.2 2.1 33 39-71 18-50 (56)
7 3na7_A HP0958; flagellar bioge 34.1 1.7E+02 0.0058 25.9 8.5 61 215-281 99-159 (256)
8 3ra3_B P2F; coiled coil domain 31.4 40 0.0014 21.2 2.7 23 215-237 2-24 (28)
9 3tnu_B Keratin, type II cytosk 30.1 1.1E+02 0.0037 24.7 6.0 82 207-294 23-108 (129)
10 3tnu_A Keratin, type I cytoske 27.3 1E+02 0.0035 24.9 5.5 82 207-294 25-110 (131)
11 4dk0_A Putative MACA; alpha-ha 27.2 1.5E+02 0.005 26.6 7.0 78 208-285 72-153 (369)
12 3he5_A Synzip1; heterodimeric 26.4 47 0.0016 23.3 2.7 19 211-229 29-47 (49)
13 2y69_K Cytochrome C oxidase po 26.1 34 0.0011 26.8 2.1 33 39-71 42-74 (80)
14 3a7p_A Autophagy protein 16; c 24.8 3.3E+02 0.011 23.4 8.5 78 209-299 64-149 (152)
15 3nmd_A CGMP dependent protein 24.6 1.5E+02 0.005 22.7 5.4 6 272-277 58-63 (72)
16 3d5a_X RF1, peptide chain rele 24.5 62 0.0021 31.2 4.1 78 222-307 31-108 (354)
17 2f1m_A Acriflavine resistance 24.4 3.1E+02 0.01 23.5 8.3 49 230-282 77-126 (277)
18 1jcd_A Major outer membrane li 24.0 1.3E+02 0.0045 21.5 4.8 31 263-293 13-43 (52)
19 1k8k_E P21, ARP2/3 complex 21 23.9 1.2E+02 0.004 26.8 5.4 69 163-231 71-146 (178)
20 1l8d_A DNA double-strand break 23.3 2.5E+02 0.0085 21.4 10.1 74 218-292 22-102 (112)
21 3mq9_A Bone marrow stromal ant 23.1 2.8E+02 0.0097 25.9 8.4 53 207-261 375-436 (471)
22 1zxa_A CGMP-dependent protein 23.1 79 0.0027 23.8 3.6 18 284-301 34-51 (67)
23 3thf_A Protein shroom; coiled- 21.0 1.8E+02 0.0061 25.9 6.0 36 259-294 99-137 (190)
24 2k9p_A Pheromone alpha factor 20.7 2.3E+02 0.0078 21.7 5.9 48 120-167 25-72 (80)
No 1
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=75.04 E-value=10 Score=32.42 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=45.2
Q ss_pred HHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHH
Q 021742 223 HFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLAR 281 (308)
Q Consensus 223 a~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar 281 (308)
+-|.+||-.|..++.+-=+-++|.+|.-|...+++ |+..+..|++.+-..+..+-
T Consensus 14 adl~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~----El~~~~~~L~~Li~~IN~TN 68 (154)
T 3kdq_A 14 VEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILT----ELEELTTRINDLVRRINRTN 68 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 45889999999999988888999999999999887 77777777777766666654
No 2
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=45.62 E-value=14 Score=25.00 Aligned_cols=28 Identities=21% Similarity=0.518 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHHhhhhHhHHHHHHHHhhccccc
Q 021742 268 AEMNQLQSELRLARSFVAEREAEVLRVRNTNNQVF 302 (308)
Q Consensus 268 Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~ 302 (308)
-|-+++|-| |..||.||.+++..|.+-.
T Consensus 7 ~ENekLhk~-------ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKE-------IEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHhhHHHH
Confidence 356677766 5789999999999998753
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.37 E-value=42 Score=25.69 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=31.2
Q ss_pred hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhcccc
Q 021742 251 DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQV 301 (308)
Q Consensus 251 dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~ 301 (308)
||.-+|-.++.|+|.--+-+..+. ..|+|||++|+.++..=|+|
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLE-------k~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELE-------LELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 677777777777776555544444 45678888888888776665
No 4
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.24 E-value=1.4e+02 Score=25.79 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=38.8
Q ss_pred hhHhHHHHHHHHHH----HhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHh
Q 021742 207 LSDEQMALLQYQRE----NLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS 282 (308)
Q Consensus 207 llEKQADLIrYLke----hNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~ 282 (308)
|.+.|.+=++=+++ ....|-+++...+.++..--.. .+|+ +..+|++..|+..+++++...|.
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a---~~~D----------eakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA---SSPD----------TAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SSCC----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCC----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555544433 2334555666666666432222 2222 34678999999999999888776
Q ss_pred hhh
Q 021742 283 FVA 285 (308)
Q Consensus 283 li~ 285 (308)
...
T Consensus 135 k~~ 137 (175)
T 3lay_A 135 KRD 137 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 5
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=37.68 E-value=32 Score=25.92 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=16.9
Q ss_pred hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhh
Q 021742 251 DLAHLLAARDQELRTLSAEMNQLQSELRLARSFV 284 (308)
Q Consensus 251 dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li 284 (308)
++...+..+|--.+.|.+++++-..|++.-|+.|
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666555666665544444444444333
No 6
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=34.39 E-value=21 Score=26.20 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcccccccch
Q 021742 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (308)
Q Consensus 39 ~~g~~~y~~ll~~~A~~~~~~~wi~~~~~~~~~ 71 (308)
++||..||+..-+|.+.-++.-|=+.|+-...|
T Consensus 18 L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVGrVtP 50 (56)
T 1v54_K 18 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred eecchhhhHhhHhhhheeeceeeccCcccccCc
Confidence 579999999999999999999999999877665
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.07 E-value=1.7e+02 Score=25.89 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=35.3
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHH
Q 021742 215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLAR 281 (308)
Q Consensus 215 IrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar 281 (308)
|.+++.-+..|-++++.+-+++..-+.. .-++...++.++.++.+..++.+..-+|++...
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~------l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~ 159 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEK------QEDLKKEMLELEKLALELESLVENEVKNIKETQ 159 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888888887777554433 123344455555555555555554444444333
No 8
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.37 E-value=40 Score=21.25 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.3
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhh
Q 021742 215 LQYQRENLHFLSEEILRLQECLS 237 (308)
Q Consensus 215 IrYLkehNa~LskriL~Lq~~l~ 237 (308)
|+-||+.|+.|-++|-.|.-+..
T Consensus 2 irrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHH
Confidence 67799999999999988865543
No 9
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.13 E-value=1.1e+02 Score=24.71 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=38.6
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhh----hchhHHhhhHHHHHhHHHHHHHHHh
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLA----ARDQELRTLSAEMNQLQSELRLARS 282 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la----~r~qelRa~~Ae~~q~~~el~~ar~ 282 (308)
.+.++.|-++.-|.-+..|.+.|=+|+.++..-+.. -..|...++ .-+.++..+.+.++.+.+||..+|.
T Consensus 23 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~------~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 23 TAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQ------CANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445566666666666777777777777766433322 011222222 1223455566666667777777777
Q ss_pred hhhHhHHHHHHH
Q 021742 283 FVAEREAEVLRV 294 (308)
Q Consensus 283 li~er~~e~~~~ 294 (308)
.++.--.|-|.+
T Consensus 97 e~~~ql~EYq~L 108 (129)
T 3tnu_B 97 DMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655554443
No 10
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.32 E-value=1e+02 Score=24.92 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=34.1
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhh----hchhHHhhhHHHHHhHHHHHHHHHh
Q 021742 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLA----ARDQELRTLSAEMNQLQSELRLARS 282 (308)
Q Consensus 207 llEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la----~r~qelRa~~Ae~~q~~~el~~ar~ 282 (308)
.+.++.|-++--|.-+..|.+.|=.|+.++..-+... ..|...++ .-+.++..+.+.++.+.+||..+|.
T Consensus 25 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~------~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 25 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMK------ASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRC 98 (131)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777777777777777664332220 11222221 1222445555666666666666666
Q ss_pred hhhHhHHHHHHH
Q 021742 283 FVAEREAEVLRV 294 (308)
Q Consensus 283 li~er~~e~~~~ 294 (308)
.++.--.|-|.+
T Consensus 99 em~~ql~EYq~L 110 (131)
T 3tnu_A 99 EMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666554554433
No 11
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.18 E-value=1.5e+02 Score=26.63 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhccc-CCCCCchhhh---HhhhhhchhHHhhhHHHHHhHHHHHHHHHhh
Q 021742 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQS-DDGSTPQVDL---AHLLAARDQELRTLSAEMNQLQSELRLARSF 283 (308)
Q Consensus 208 lEKQADLIrYLkehNa~LskriL~Lq~~l~kye~~-~~gst~qvdl---~h~la~r~qelRa~~Ae~~q~~~el~~ar~l 283 (308)
+++...-+.-++......-.++-..+..+.+++.- ++|..++-++ ..-++.-+.++.++.+++++++.+++.++.-
T Consensus 72 l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh
Q 021742 284 VA 285 (308)
Q Consensus 284 i~ 285 (308)
++
T Consensus 152 l~ 153 (369)
T 4dk0_A 152 LG 153 (369)
T ss_dssp TC
T ss_pred hh
No 12
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.40 E-value=47 Score=23.28 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHhhHHH
Q 021742 211 QMALLQYQRENLHFLSEEI 229 (308)
Q Consensus 211 QADLIrYLkehNa~Lskri 229 (308)
..|+|.||....+.|-++|
T Consensus 29 kkdliaylekeianlrkki 47 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3588999988888887776
No 13
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=26.10 E-value=34 Score=26.75 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=29.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcccccccch
Q 021742 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (308)
Q Consensus 39 ~~g~~~y~~ll~~~A~~~~~~~wi~~~~~~~~~ 71 (308)
++||..||+..=+|..+=++.-|=+.|+-..+|
T Consensus 42 L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVGrVtP 74 (80)
T 2y69_K 42 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred eecchhHHHhhHHHhheecceeecCCcccccCc
Confidence 579999999999999999999999999877665
No 14
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.83 E-value=3.3e+02 Score=23.38 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=47.3
Q ss_pred HhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHh------
Q 021742 209 DEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS------ 282 (308)
Q Consensus 209 EKQADLIrYLkehNa~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~------ 282 (308)
..+.+.|+=|+.+++.|.++|-.|.+.+..-.+. +..=-.|+=++..+.|.+...++....
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~-------------~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKN-------------TERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788999999999999999888887432222 111123555666666666666665543
Q ss_pred --hhhHhHHHHHHHHhhcc
Q 021742 283 --FVAEREAEVLRVRNTNN 299 (308)
Q Consensus 283 --li~er~~e~~~~r~~n~ 299 (308)
.++.+..|+.+....|+
T Consensus 131 ~RWM~rk~qEAe~MN~an~ 149 (152)
T 3a7p_A 131 ARWLKKTEKETEAMNSEID 149 (152)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 45666666666655553
No 15
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.60 E-value=1.5e+02 Score=22.66 Aligned_cols=6 Identities=67% Similarity=0.789 Sum_probs=2.1
Q ss_pred hHHHHH
Q 021742 272 QLQSEL 277 (308)
Q Consensus 272 q~~~el 277 (308)
.|++||
T Consensus 58 ~LqseL 63 (72)
T 3nmd_A 58 MLQNEL 63 (72)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 16
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=24.49 E-value=62 Score=31.23 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=42.7
Q ss_pred hHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhcccc
Q 021742 222 LHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQV 301 (308)
Q Consensus 222 Na~LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~ 301 (308)
-..++|+.-.|+..+..|+.-......--++..++. |.|++.++. .|+......+++-+.++..+=.-++.|
T Consensus 31 ~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~--D~e~~~~a~------~e~~~l~~~~~~le~~l~~lLlp~~~~ 102 (354)
T 3d5a_X 31 YQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD--DPELKEMAK------AEREALLARKEALEKELERHLLPKDPM 102 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--CHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 356677777777777766654222222224444444 777764432 356666666666666666554445555
Q ss_pred cccccC
Q 021742 302 FSSSIF 307 (308)
Q Consensus 302 ~~e~~~ 307 (308)
=+.|++
T Consensus 103 D~~n~i 108 (354)
T 3d5a_X 103 DERDAI 108 (354)
T ss_dssp CCCCEE
T ss_pred cccceE
Confidence 444443
No 17
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=24.37 E-value=3.1e+02 Score=23.53 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=25.8
Q ss_pred HHHHHHhhhhccc-CCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHh
Q 021742 230 LRLQECLSKYEQS-DDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS 282 (308)
Q Consensus 230 L~Lq~~l~kye~~-~~gst~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~ 282 (308)
-..+..+.+++.- +.|..++.+++. ...++....|++++.+++++.++.
T Consensus 77 ~~a~~~~~r~~~L~~~g~~s~~~~~~----a~~~~~~a~a~l~~a~a~l~~a~~ 126 (277)
T 2f1m_A 77 NIAQLTVNRYQKLLGTQYISKQEYDQ----ALADAQQANAAVTAAKAAVETARI 126 (277)
T ss_dssp HHHHHHHHHHHTTTTSTTCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555544 346666666543 233455555566666666655554
No 18
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.00 E-value=1.3e+02 Score=21.46 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=21.1
Q ss_pred HhhhHHHHHhHHHHHHHHHhhhhHhHHHHHH
Q 021742 263 LRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (308)
Q Consensus 263 lRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (308)
+-.|++..+||++++..+|+-+.-=..|..|
T Consensus 13 V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888766654445444
No 19
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=23.94 E-value=1.2e+02 Score=26.85 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=43.9
Q ss_pred HHHHHHH-HHHhcCCCCCcchhhcccCCC-CCCCCCCCccccCCCc----hhHhHHHHHH-HHHHHhHHhhHHHHH
Q 021742 163 MSVYIGY-VHQYNSLNSQPDVMKSLYSPL-QPSSSLEGLRYHDGGR----LSDEQMALLQ-YQRENLHFLSEEILR 231 (308)
Q Consensus 163 li~Yivk-V~rFNk~kp~PDVl~ee~s~~-~ps~s~~E~Gfrd~g~----llEKQADLIr-YLkehNa~LskriL~ 231 (308)
+++||-. ..|..+....-|+.++.+.-+ -.-+.+||-||-=++- =..+.+|++| ||+|==..++.|++.
T Consensus 71 ltlyi~eCLkkl~~~~~k~ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~e 146 (178)
T 1k8k_E 71 ITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCE 146 (178)
T ss_dssp HHHHHHHHHHHHTSCCSHHHHHHHHHHHHHSCCCCTTSTTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHhhhcCCCCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 455666666667777765432 3345788889875442 2345677776 999988899987763
No 20
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.29 E-value=2.5e+02 Score=21.38 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=48.7
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCch----hh---hHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHH
Q 021742 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQ----VD---LAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAE 290 (308)
Q Consensus 218 LkehNa~LskriL~Lq~~l~kye~~~~gst~q----vd---l~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e 290 (308)
|++.-..+..++-.+...+..++.. .|.=|- +| -.+..+..++++..+.+++..+..++......+.+-..+
T Consensus 22 L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 22 ITQRIGELKNKIGDLKTAIEELKKA-KGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888888764 221121 11 135666677777777777777777777666666665555
Q ss_pred HH
Q 021742 291 VL 292 (308)
Q Consensus 291 ~~ 292 (308)
+.
T Consensus 101 ~~ 102 (112)
T 1l8d_A 101 IK 102 (112)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 21
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.05 E-value=2.8e+02 Score=25.90 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=28.3
Q ss_pred hhHhHHHHHHHHHHHhHH---------hhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchh
Q 021742 207 LSDEQMALLQYQRENLHF---------LSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ 261 (308)
Q Consensus 207 llEKQADLIrYLkehNa~---------LskriL~Lq~~l~kye~~~~gst~qvdl~h~la~r~q 261 (308)
+-+-|..+-+.+++..+. |.|+|=+.|..+.+-|.- .+|-.--+..|-++=|.
T Consensus 375 l~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 436 (471)
T 3mq9_A 375 LKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQ--AATANHTVMALMASLDA 436 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHH--hhhcchhHHHHHHHHHH
Confidence 555555666666665544 666666666666555554 33333333444443333
No 22
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.05 E-value=79 Score=23.78 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=10.8
Q ss_pred hhHhHHHHHHHHhhcccc
Q 021742 284 VAEREAEVLRVRNTNNQV 301 (308)
Q Consensus 284 i~er~~e~~~~r~~n~q~ 301 (308)
++++|+||+++|..=++|
T Consensus 34 L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 34 LSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666554444
No 23
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=21.02 E-value=1.8e+02 Score=25.93 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=21.4
Q ss_pred chhHHhhhHHHHHhHHHHHHHHHh---hhhHhHHHHHHH
Q 021742 259 RDQELRTLSAEMNQLQSELRLARS---FVAEREAEVLRV 294 (308)
Q Consensus 259 r~qelRa~~Ae~~q~~~el~~ar~---li~er~~e~~~~ 294 (308)
..+|-.+|.+-.++|..+..-|+- =+|.|++.+..+
T Consensus 99 ~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~i 137 (190)
T 3thf_A 99 RQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGL 137 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666655555544 377777766654
No 24
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=20.67 E-value=2.3e+02 Score=21.73 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 021742 120 AITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYI 167 (308)
Q Consensus 120 ~I~S~Gna~LLli~~~~~~~~~Ls~~~ilriil~lElv~~l~~li~Yi 167 (308)
+-+-.|-+++++++.|.-...+-++.+++=.+..+=.++=..|...|+
T Consensus 25 ~G~~iGAs~llliil~lltkkrrspiF~lN~~~L~l~iirs~l~~~y~ 72 (80)
T 2k9p_A 25 FGVRSGAAALTLIVVWITSRSRKTPIFIINQVSLFLIILHSALYFKYL 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 447789999999999888766666555553444444444455555554
Done!