Query 021742
Match_columns 308
No_of_seqs 72 out of 74
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 08:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021742.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021742hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 44.5 20 0.0014 24.0 5.1 36 203-238 23-58 (61)
2 d2e74e1 f.23.24.1 (E:1-32) Pet 43.5 8.7 0.00064 23.4 2.7 26 39-64 2-27 (32)
3 d1st6a5 a.24.9.1 (A:489-646) V 24.5 85 0.0062 25.0 6.7 46 218-263 49-95 (158)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.9 1.2E+02 0.009 21.9 8.1 29 213-241 8-36 (133)
5 d3b55a1 c.150.1.3 (A:40-442) S 22.9 2.3E+02 0.016 24.5 10.5 29 213-241 144-172 (403)
6 d1am9a_ a.38.1.1 (A:) SREBP-1a 19.4 68 0.005 22.0 4.5 36 206-241 43-78 (80)
7 d1v54k_ f.23.5.1 (K:) Mitochon 19.3 28 0.002 23.2 2.1 33 39-71 13-45 (49)
8 d1jb0i_ f.23.17.1 (I:) Subunit 17.4 18 0.0013 22.9 0.8 20 56-75 7-26 (38)
9 d1cota_ a.3.1.1 (A:) Cytochrom 13.1 29 0.0021 25.3 1.0 13 209-221 105-117 (121)
10 d1nh2d1 a.32.1.1 (D:5-54) Smal 12.6 8.9 0.00065 25.9 -1.9 39 103-153 1-39 (50)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.50 E-value=20 Score=23.97 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=31.9
Q ss_pred CCCchhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhh
Q 021742 203 DGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSK 238 (308)
Q Consensus 203 d~g~llEKQADLIrYLkehNa~LskriL~Lq~~l~k 238 (308)
+...++++=.|-|++|++.+..|.++...|+.+..+
T Consensus 23 ~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 23 HKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445599999999999999999999999999988754
No 2
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=43.46 E-value=8.7 Score=23.39 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcc
Q 021742 39 IFGSVVYCFVLAGYAILAAGTTWIFH 64 (308)
Q Consensus 39 ~~g~~~y~~ll~~~A~~~~~~~wi~~ 64 (308)
+.|+++|++..+-|-+.+++..+...
T Consensus 2 ilgavfyivfialffgiavgiifaik 27 (32)
T d2e74e1 2 ILGAVFYIVFIALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHHHhhheeeEE
Confidence 57999999999988887777655533
No 3
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.53 E-value=85 Score=24.95 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=34.7
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh-hhHhhhhhchhHH
Q 021742 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQV-DLAHLLAARDQEL 263 (308)
Q Consensus 218 LkehNa~LskriL~Lq~~l~kye~~~~gst~qv-dl~h~la~r~qel 263 (308)
.|++.-.+-.+|-+|..+|+...+..-|.||+- +++--+..+=++|
T Consensus 49 ~r~~Il~~C~el~~l~~~LadLr~~G~G~sPeA~~lA~qi~~kL~dL 95 (158)
T d1st6a5 49 YRQDLLAKCDRVDQLAAQLADLAARGEGESPQARAIAAQLQDSLKDL 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSTTSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 367777888899999999999999988999986 4554444444444
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.88 E-value=1.2e+02 Score=21.87 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=21.7
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcc
Q 021742 213 ALLQYQRENLHFLSEEILRLQECLSKYEQ 241 (308)
Q Consensus 213 DLIrYLkehNa~LskriL~Lq~~l~kye~ 241 (308)
..++.+++....|.+++-+++...++|+.
T Consensus 8 ~~~~~l~~~l~~l~~~i~~l~~~~~e~~~ 36 (133)
T d1fxkc_ 8 AQLNIYQSQVELIQQQMEAVRATISELEI 36 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888877774
No 5
>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein BC3120 {Bacillus cereus [TaxId: 1396]}
Probab=22.87 E-value=2.3e+02 Score=24.53 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcc
Q 021742 213 ALLQYQRENLHFLSEEILRLQECLSKYEQ 241 (308)
Q Consensus 213 DLIrYLkehNa~LskriL~Lq~~l~kye~ 241 (308)
.++.||+++...+-+++-..-.|+..+..
T Consensus 144 ~v~~yl~~~~p~~~~~~~~~~~~l~~~~~ 172 (403)
T d3b55a1 144 NIIEYIKANNSKLLPRVEEKIKGLIPVTK 172 (403)
T ss_dssp HHHHHHHHHHGGGTHHHHHHHHHHGGGSS
T ss_pred HHHHHHHhhCHHHHHHHHHHHhhhccccc
Confidence 47889999999999888877777765543
No 6
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.36 E-value=68 Score=21.96 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=32.3
Q ss_pred chhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcc
Q 021742 206 RLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQ 241 (308)
Q Consensus 206 ~llEKQADLIrYLkehNa~LskriL~Lq~~l~kye~ 241 (308)
.++++=.+.|.+|++.+..|.++...|+..+.+.+.
T Consensus 43 ~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~~ 78 (80)
T d1am9a_ 43 AVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKS 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 499999999999999999999999999988876543
No 7
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.35 E-value=28 Score=23.24 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=28.7
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcccccccch
Q 021742 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (308)
Q Consensus 39 ~~g~~~y~~ll~~~A~~~~~~~wi~~~~~~~~~ 71 (308)
++||..+|+-.=+|...-++.-|=+.|+-..+|
T Consensus 13 L~~Ga~fc~avW~yv~TQ~gI~WnlSPVGrVtP 45 (49)
T d1v54k_ 13 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred Eecccchhhhhhhheeeeeeeeecccccccccc
Confidence 578999999999999999999999988876655
No 8
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=17.38 E-value=18 Score=22.93 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=12.6
Q ss_pred HhhhhhhcccccccchhHHH
Q 021742 56 AAGTTWIFHPIHYLIPPLLC 75 (308)
Q Consensus 56 ~~~~~wi~~~~~~~~~~ll~ 75 (308)
+...||||.|+--...|...
T Consensus 7 AsyLPwI~iPvv~wl~p~vv 26 (38)
T d1jb0i_ 7 ASFLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp TTTHHHHHHHHHHTHHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHH
Confidence 45789998876554444433
No 9
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}
Probab=13.07 E-value=29 Score=25.27 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=10.6
Q ss_pred HhHHHHHHHHHHH
Q 021742 209 DEQMALLQYQREN 221 (308)
Q Consensus 209 EKQADLIrYLkeh 221 (308)
+..+|||.|||..
T Consensus 105 ~d~~dliAYLks~ 117 (121)
T d1cota_ 105 KNQADVVAFLAQN 117 (121)
T ss_dssp SCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 3468999999975
No 10
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.55 E-value=8.9 Score=25.92 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=22.4
Q ss_pred hHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhcccccccHHHHHHHHHH
Q 021742 103 GYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIML 153 (308)
Q Consensus 103 GYl~Fyr~Tr~lkrlPl~I~S~Gna~LLli~~~~~~~~~Ls~~~ilriil~ 153 (308)
||+++||.| ++|++..=.+=-+.. .+.+++.+-.+++.-
T Consensus 1 ~yYelYR~s-----------tlG~~L~dtLDeli~-~~~I~p~LA~kVL~q 39 (50)
T d1nh2d1 1 GYYELYRRS-----------TIGNSLVDALDTLIS-DGRIEASLAMRVLET 39 (50)
T ss_dssp CCCCGGGGS-----------HHHHHHHHHHHHHHH-TTSSCHHHHHHHHHH
T ss_pred ChHHHHhcc-----------hHHHHHHHHHHHHHH-cCCCCHHHHHHHHHH
Confidence 688888887 677775322221111 456777766655443
Done!