BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021744
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182
+ G + L W G + + L GH V + L ++ SGS+D T+RVWD +G
Sbjct: 173 ISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG 229
Query: 183 QCAGVINLG--GEVGCMISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVG 238
QC V+ +G V C+ +G + G +F VK W+ +T T L +L G +VY++
Sbjct: 230 QCLHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD 288
Query: 239 NDLLFAGTQDGAILAWKFNVTTNCF 263
+ +G+ D +I W T NC
Sbjct: 289 GIHVVSGSLDTSIRVWDVE-TGNCI 312
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT-LP 159
+I R VIK + W Y + + +W G+ K L+GH V IT L
Sbjct: 73 HIKRRKVIKPGFIHSPW---KSAYIRQHRIDTNWRRGE-LKSPKVLKGHDDHV--ITCLQ 126
Query: 160 SGSDKLYSGSKDETVRVWDCASGQCAGVI--NLGGEVGCMISEGPWIFIGVTNFVKAWNT 217
+++ SGS D T++VW +G+C + + GG + + I +K WN
Sbjct: 127 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA 186
Query: 218 QTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN 257
+T + +L G V M + + +G++D + W
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN----LGGEVGCMISEG 201
L GHQ + SG+ L + L SG+ D TV++WD +GQC + V C+
Sbjct: 315 LTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 372
Query: 202 PWIFIGVTN-FVKAWNTQTN------TDLSLSGPVGQVYAMAVGNDLLFA------GTQD 248
++ + VK W+ +T L G G V+ + N L GT++
Sbjct: 373 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 432
Query: 249 GAILAWKFNV 258
+L F+V
Sbjct: 433 TKLLVLDFDV 442
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 94 AGNSKNSNINNRAVIKTDILCRNWV---QGNCM-YGEKCKFLHSWTVGDGFKLLTQLEGH 149
A N N+N + +D+ R+ G + G + + + W + + K++ L+GH
Sbjct: 106 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI-ENRKIVMILQGH 164
Query: 150 QKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMISEGPWIFIG 207
++ + + PSG DKL SGS D TVR+WD +GQC+ +++ G +S G +I
Sbjct: 165 EQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223
Query: 208 VTNF---VKAWNTQT--------NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254
+ V+ W+++T + + S +G VY++ D + +G+ D ++ W
Sbjct: 224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Query: 255 KFNVTTN 261
N
Sbjct: 284 NLQNANN 290
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 67 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 126 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 150
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 151 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 191
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 156 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 274
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 275 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 302
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 62 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 121 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 145
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 146 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 186
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 151 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 269
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 270 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 297
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 69 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 128 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 152
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 153 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 193
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 158 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 276
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 277 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 304
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 51 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 110 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 134
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 135 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 175
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 140 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 259 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 286
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 45 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 104 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 128
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 129 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 169
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 134 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 253 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 280
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 44 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 103 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 127
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 128 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 168
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 133 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 191
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 251
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 252 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 279
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 51 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 110 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 134
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 135 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 175
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 140 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 259 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 286
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 50 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 109 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 133
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 134 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 174
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 139 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 257
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 258 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 285
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 45 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 104 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 128
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 129 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 169
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 134 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 253 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 280
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 41 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 100 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 124
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 125 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 165
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 130 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 248
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 249 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 276
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 48 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 132 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 172
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 137 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 256 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 283
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182
+ G + K + W V G L+T L GH V G+ SG + S + D+T+RVWD +
Sbjct: 312 LSGSRDKTIKMWDVSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 183 QCAGVINLGGEVGCMI---SEGPWIFIG-VTNFVKAWN 216
+C +N + P++ G V VK W
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
GF+ + + GH VS +++ D + S S+D+T+++W+ +G C
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 133 SWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
SW + +++ G + SG P L SGS+D+T+++WD ++G C
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPF----LLSGSRDKTIKMWDVSTGMC 330
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W V G+ + T GH++ V + + S S D+TVRVW A+ +C +
Sbjct: 214 KTIKMWEVQTGYCVKT-FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
V IS P + + + T ++ SG G L +G++D
Sbjct: 273 REHRHVVECISWAP------ESSYSSISEATGSETKKSGKPGP---------FLLSGSRD 317
Query: 249 GAILAW 254
I W
Sbjct: 318 KTIKMW 323
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 116 NWVQGNCMYGEKCKFLHSWTVGDGFKL--------LTQLEGHQKVVSGITLPSGSDKLYS 167
NWV+G ++ KF+ S ++ + L H+ V+ + + + +
Sbjct: 339 NWVRG-VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397
Query: 168 GSKDETVRVWDC 179
GS D+TV+VW+C
Sbjct: 398 GSVDQTVKVWEC 409
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 48 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 132 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 172
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 21/186 (11%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 137 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSVSFIMFIGQNNK 302
+G++D + W E L+ HTD + +++ S + +N+K
Sbjct: 256 VSGSEDNLVYIWNLQTK----EIVQKLQGHTDVVISTACHPTENIIASAAL-----ENDK 306
Query: 303 GVVCYR 308
+ Y+
Sbjct: 307 TIKLYK 312
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 51 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 110 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 134
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 135 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 175
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 140 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 259 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 286
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 46 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 105 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 129
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 130 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 170
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 135 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 253
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 254 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 281
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 48 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 132 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 172
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G K L L H VS + + S S D R+WD ASGQC + N
Sbjct: 137 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 256 VSGSEDNLVYIWNLQTK----EIVQKLQGHTD 283
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 48 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 132 ESVRIWDVK-TGMCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 172
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G L T L H VS + + S S D R+WD ASGQC + N
Sbjct: 137 WDVKTGMCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 256 VSGSEDNMVYIWNLQTK----EIVQKLQGHTD 283
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 48 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
++ W T C + +L H+D A HF+RD SL+ S S+
Sbjct: 132 ESVRIWDVK-TGMCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 172
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----N 189
W V G L T L H VS + + S S D R+WD ASGQC + N
Sbjct: 137 WDVKTGMCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 190 LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM-----AVGNDLL 242
G +I + N +K W+ L + +G + Y + G +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+G++D + W E L+ HTD
Sbjct: 256 VSGSEDNMVYIWNLQTK----EIVQKLQGHTD 283
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-----VGCM----- 197
GH K V + + ++ S S+D T+++W+ G+C I+ GGE V C+
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPN 528
Query: 198 -----ISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQD 248
I W VK WN +N L +L+G G V +AV D L +G +D
Sbjct: 529 TLQPTIVSASW-----DKTVKVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582
Query: 249 GAILAWKFNVTTNCFEPAASLKVH 272
G +L W + A+ +H
Sbjct: 583 GVVLLWDLAEGKKLYSLEANSVIH 606
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 24/138 (17%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--CMI 198
KL + L GH VS + + SG KD V +WD A G+ + + C
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611
Query: 199 SEGPWIFIGVTNFVKAWNTQTNT---DLSL-----------SGPVGQ----VYAMAVG-- 238
W+ + +K W+ ++ + DL + SGP +Y ++
Sbjct: 612 PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671
Query: 239 --NDLLFAGTQDGAILAW 254
LF+G DG I W
Sbjct: 672 ADGSTLFSGYTDGVIRVW 689
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGE-VGCMI 198
+ + L GH++ GI D+L SGS D T+R+WD G C V+ E V C+
Sbjct: 287 EFVRTLNGHKR---GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 343
Query: 199 SEGPWIFIGVTN-FVKAWNTQTNTD----------LSLSGPVGQVYAMAVGNDLLFAGTQ 247
+ I G + +K W+ D +L G+V+ + + + +
Sbjct: 344 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSH 403
Query: 248 DGAILAWKF 256
D IL W F
Sbjct: 404 DDTILIWDF 412
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 11/134 (8%)
Query: 146 LEGHQKVVSGITLPSGSDK-LYSGSKDETVRVWDCASGQCAGVINLGGE---VGCMISEG 201
L GH+ V+ + DK + S S D T++VW+ ++ C V L G + C+
Sbjct: 252 LVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTST--CEFVRTLNGHKRGIACLQYRD 306
Query: 202 PWIFIGVT-NFVKAWNTQTNTDLS-LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259
+ G + N ++ W+ + L L G V + N + +G DG I W
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 366
Query: 260 TNCFEPAASLKVHT 273
+ PA +L + T
Sbjct: 367 LDPRAPAGTLCLRT 380
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 21/175 (12%)
Query: 92 YRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK 151
+R G I+ R+ + C + + G + + W + + L GH
Sbjct: 116 WRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWD-KNTLECKRILTGHTG 174
Query: 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--------CAGVINLGGEVGCMISEGPW 203
V + L + +GS D TVRVWD +G+ C V++L G M++
Sbjct: 175 SV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT---- 228
Query: 204 IFIGVTNFVKAWNTQTNTDLSLS----GPVGQVYAMAVGNDLLFAGTQDGAILAW 254
+ W+ + TD++L G V + + + + + D I W
Sbjct: 229 --CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC +
Sbjct: 87 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATL 144
Query: 189 NLG-----GEVGCMISEGP------WIFIGVTNFVKAWN-TQTNTDLSLSGPVGQVYAMA 236
LG +V + +E I G VKAWN Q + G + +
Sbjct: 145 -LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV 271
D L+ + +DG I+ W + +A +V
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 122 CMYGEKCKFLHSWTV-GDGFKL---LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
+ + K L SW + GD K + +GH +V TL + S S D+T+R+W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 178 DCASGQC 184
D A+G+
Sbjct: 93 DVATGET 99
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC +
Sbjct: 87 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATL 144
Query: 189 NLG-----GEVGCMISEGP------WIFIGVTNFVKAWN-TQTNTDLSLSGPVGQVYAMA 236
LG +V + +E I G VKAWN Q + G + +
Sbjct: 145 -LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV 271
D L+ + +DG I+ W + +A +V
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 122 CMYGEKCKFLHSWTV-GDGFKL---LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
+ + K L SW + GD K + +GH +V TL + S S D+T+R+W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 178 DCASGQC 184
D A+G+
Sbjct: 93 DVATGET 99
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC +
Sbjct: 81 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATL 138
Query: 189 NLG-----GEVGCMISEGP------WIFIGVTNFVKAWN-TQTNTDLSLSGPVGQVYAMA 236
LG +V + +E I G VKAWN Q + G + +
Sbjct: 139 -LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV 271
D L+ + +DG I+ W + +A +V
Sbjct: 198 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 234
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 122 CMYGEKCKFLHSWTV-GDGFKL---LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
+ + K L SW + GD K + +GH +V TL + S S D+T+R+W
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 178 DCASGQC 184
D A+G+
Sbjct: 87 DVATGET 93
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC +
Sbjct: 87 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATL 144
Query: 189 NLG-----GEVGCMISEGP------WIFIGVTNFVKAWN-TQTNTDLSLSGPVGQVYAMA 236
LG +V + +E I G VKAWN Q + G + +
Sbjct: 145 -LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV 271
D L+ + +DG I+ W + +A +V
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 122 CMYGEKCKFLHSWTV-GDGFKL---LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
+ + K L SW + GD K + +GH +V TL + S S D+T+R+W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 178 DCASGQC 184
D A+G+
Sbjct: 93 DVATGET 99
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC +
Sbjct: 87 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATL 144
Query: 189 NLG-----GEVGCMISEGP------WIFIGVTNFVKAWN-TQTNTDLSLSGPVGQVYAMA 236
LG +V + +E I G VKAWN Q + G + +
Sbjct: 145 -LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV 271
D L+ + +DG I+ W + +A +V
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 122 CMYGEKCKFLHSWTV-GDGFKL---LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
+ + K L SW + GD K + +GH +V TL + S S D+T+R+W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 178 DCASGQC 184
D A+G+
Sbjct: 93 DVATGET 99
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187
K L QL GH V + G L SGS D TVRVWD G C V
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV 198
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS------ 199
L GH V T+ + + SGS D T+ VWD A +C + L G + S
Sbjct: 266 LRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI--LSGHTDRIYSTIYDHE 321
Query: 200 EGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258
I + ++ W+ + + +L G V + + + L + DG+I W N
Sbjct: 322 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
Query: 259 TTNCF 263
+ F
Sbjct: 382 YSRKF 386
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
W V K L L GH + + S S D T+R+WD +G+
Sbjct: 295 WDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187
K L QL GH V + G L SGS D TVRVWD G C V
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV 198
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS------ 199
L GH V T+ + + SGS D T+ VWD A +C + L G + S
Sbjct: 266 LRGHXASVR--TVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI--LSGHTDRIYSTIYDHE 321
Query: 200 EGPWIFIGVTNFVKAWNTQT-NTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258
I ++ W+ + +L G V + + + L + DG+I W N
Sbjct: 322 RKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
Query: 259 TTNCF 263
+ F
Sbjct: 382 YSRKF 386
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
W V K L L GH + + S S D T+R+WD +G+
Sbjct: 295 WDVAQX-KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL 344
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
W + + L EGH+ V + P SG D TV+VW + G
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 193 EVGC------MISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVGN---DL 241
E G + + P++ + +K W+ QT + + +L G + V + AV + +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPI 242
Query: 242 LFAGTQDGAILAW 254
+ +G++DG + W
Sbjct: 243 IISGSEDGTLKIW 255
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGP 202
+ LEGH VS + SGS+D T+++W+ ++ + +N+G E I+ P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
W + + L EGH+ V + P SG D TV+VW + G
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 193 EVGC------MISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVGN---DL 241
E G + + P++ + +K W+ QT + + +L G + V + AV + +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPI 242
Query: 242 LFAGTQDGAILAW 254
+ +G++DG + W
Sbjct: 243 IISGSEDGTLKIW 255
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGP 202
+ LEGH VS + SGS+D T+++W+ ++ + +N+G E I+ P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
L W+V DG T L GH+ V+ I + + S S D T+R+W+C +G N
Sbjct: 160 LKIWSVKDGSNPRT-LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
L W+V DG T L GH+ V+ I + + S S D T+R+W+C +G N
Sbjct: 163 LKIWSVKDGSNPRT-LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 3/121 (2%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
W + G +L+T L+GH V+ +T+ S KD R+WD G+ + G
Sbjct: 181 WDLATG-RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP 239
Query: 194 VG--CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAI 251
+ C W+ ++ ++ + + P Q V + A + DG+
Sbjct: 240 INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGST 299
Query: 252 L 252
L
Sbjct: 300 L 300
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 19/156 (12%)
Query: 131 LHSWTVGDG---FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187
L W + +G +K L GH K V + + ++ SG +D +RVW+ G+C
Sbjct: 91 LRLWNLQNGQCQYKFL----GHTKDVLSVAFSPDNRQIVSGGRDNALRVWN-VKGECMHT 145
Query: 188 INLGGE---VGCM----ISEGPWIFI-GVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVG 238
++ G V C+ + P I G N VK W+ T ++ L G V ++ V
Sbjct: 146 LSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS 205
Query: 239 ND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH 272
D L + +DG W E AA ++
Sbjct: 206 PDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPIN 241
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
+LEGH VS + L + + S S D ++R+W+ +GQC
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQC 101
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC +
Sbjct: 87 KTLRLWDVATG-ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATL 144
Query: 189 NLG-----GEVGCMISEGP------WIFIGVTNFVKAWN-TQTNTDLSLSGPVGQVYAMA 236
LG +V + +E I G VKAWN Q + G + +
Sbjct: 145 -LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV 271
D L+ + +DG I W + +A +V
Sbjct: 204 ASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV 240
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 122 CMYGEKCKFLHSWTV-GDGFKL---LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
+ + K L SW + GD K + +GH +V TL + S S D+T+R+W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 178 DCASGQC 184
D A+G+
Sbjct: 93 DVATGET 99
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
W + + L EGH+ V + P SG D TV+VW + G
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 193 EVGC------MISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVGN---DL 241
E G + + P++ + +K W+ QT + + +L G + V + AV + +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPI 242
Query: 242 LFAGTQDGAILAW 254
+ +G++DG + W
Sbjct: 243 IISGSEDGTLKIW 255
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGP 202
+ LEGH VS + SGS+D T+++W+ ++ + +N+G E I+ P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Query: 203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGA 250
G N++ + T LSL + VG L+++G ++ A
Sbjct: 281 ---TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGK-LVWSGGKNAA 324
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
W + + L EGH+ V + P SG D TV+VW + G
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 193 EVGC------MISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVGN---DL 241
E G + + P++ + +K W+ QT + + +L G + V + AV + +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPI 242
Query: 242 LFAGTQDGAILAW 254
+ +G++DG + W
Sbjct: 243 IISGSEDGTLKIW 255
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGP 202
+ LEGH VS + SGS+D T+++W+ ++ + +N+G E I+ P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 112 ILCRNWVQGNCMYGEKCKFLHSW 134
++C++W++G C G++C+FLH +
Sbjct: 17 VVCKHWLRGLCKKGDQCEFLHEY 39
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG---QCAGVIN 189
D F+ +T LEGH+ V + + L + S+D++V VW+ +C V+N
Sbjct: 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
D + LEGH+ V + +L S S D TVR+W
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 3/120 (2%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
W + K+ GH V G+ + S D+T+RVW+ I L E
Sbjct: 867 WNIDSRLKV-ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925
Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA--GTQDGAI 251
+ + E + + V N T P QV + L + G +DGAI
Sbjct: 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 985
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 9/130 (6%)
Query: 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIF 205
GH+K V I + L S S+D ++VW+ +G + V ++ + +
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1060
Query: 206 IGVTNFVKAWNTQT-NTDLSLSGPVGQVYAMAVGNDLL-FAGTQ-DGAILAWKFNVTTNC 262
VK WN T + + G V + A+ +D F+ T D W F++
Sbjct: 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL---- 1116
Query: 263 FEPAASLKVH 272
P LK H
Sbjct: 1117 LSPLHELKGH 1126
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--IS 199
L+ Q +GH S I + + KL++G D TVR WD G+ + ++ +
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234
Query: 200 EGPWIFIGV 208
G W+ +G+
Sbjct: 235 TGEWLAVGM 243
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 3/120 (2%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
W + K+ GH V G+ + S D+T+RVW+ I L E
Sbjct: 874 WNIDSRLKV-ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 932
Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA--GTQDGAI 251
+ + E + + V N T P QV + L + G +DGAI
Sbjct: 933 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 992
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 9/130 (6%)
Query: 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIF 205
GH+K V I + L S S+D ++VW+ +G + V ++ + +
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1067
Query: 206 IGVTNFVKAWNTQT-NTDLSLSGPVGQVYAMAVGNDLL-FAGTQ-DGAILAWKFNVTTNC 262
VK WN T + + G V + A+ +D F+ T D W F++ +
Sbjct: 1068 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-- 1125
Query: 263 FEPAASLKVH 272
P LK H
Sbjct: 1126 --PLHELKGH 1133
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE---VGCMI----SE 200
GH K V + S + ++ SGS+D+T+++W+ G C + V C+ S
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSS 161
Query: 201 GPWIF-IGVTNFVKAWNTQTNTDLSLS--GPVGQVYAMAVGND--LLFAGTQDGAILAWK 255
P I G VK WN N L + G G + + V D L +G +DG + W
Sbjct: 162 NPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Query: 256 FN 257
N
Sbjct: 221 LN 222
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182
L GH VS + + S SGS D T+R+WD +G
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 95
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 17/147 (11%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W + + KL T GH ++ +T+ SG KD +WD G+ +
Sbjct: 172 KLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 230
Query: 189 NLGGEVGCMISEGP---WIFIGVTNFVKAWNTQ------------TNTDLSLSGPVGQVY 233
+ GG++ + P W+ +K W+ + +T P
Sbjct: 231 D-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289
Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTT 260
A + LFAG D + W+ + T
Sbjct: 290 AWSADGQTLFAGYTDNLVRVWQVTIGT 316
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAGVINLGGEVGCMISEGPW 203
L GHQ+ V L S +L S S D TV+VW+ +G + V + G + C IS
Sbjct: 1046 LRGHQETVKDFRLLKNS-RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 204 IFIGVT--NFVKAWNTQTNTDL-SLSGPVGQVY--AMAVGNDLLFAGTQDGAILAW 254
F + K W+ L L G G V A +V + LL G +G I W
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE---VGCMI----SE 200
GH K V + S + ++ SGS+D+T+++W+ G C + V C+ S
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSS 184
Query: 201 GPWIF-IGVTNFVKAWNTQTNTDLSLS--GPVGQVYAMAVGND--LLFAGTQDGAILAWK 255
P I G VK WN N L + G G + + V D L +G +DG + W
Sbjct: 185 NPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Query: 256 FN 257
N
Sbjct: 244 LN 245
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182
L GH VS + + S SGS D T+R+WD +G
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 17/147 (11%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W + + KL T GH ++ +T+ SG KD +WD G+ +
Sbjct: 195 KLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253
Query: 189 NLGGEVGCMISEGP---WIFIGVTNFVKAWNTQ------------TNTDLSLSGPVGQVY 233
+ GG++ + P W+ +K W+ + +T P
Sbjct: 254 D-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 312
Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTT 260
A + LFAG D + W+ + T
Sbjct: 313 AWSADGQTLFAGYTDNLVRVWQVTIGT 339
>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In
Cleavage And Polyadenylation Specificity Factor
Length = 77
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 112 ILCRNWVQGNCMYGEKCKFLHSW 134
++C++W++G C G++C+FLH +
Sbjct: 11 VVCKHWLRGLCKKGDQCEFLHEY 33
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
C +W + G + +H V + L+GH V G+ S +L SG D
Sbjct: 181 CLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240
Query: 174 VRVWDCAS 181
V++WD S
Sbjct: 241 VQIWDARS 248
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261
Q T +L G + ++YAM G D LL + +QDG ++ W + TTN
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD-SYTTN 88
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261
Q T +L G + ++YAM G D LL + +QDG ++ W + TTN
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD-SYTTN 88
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
KLL LEGH + +T S L + S D ++++D AG ++
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 245
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 113 LCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK 151
LCR + + G C YGEKC+F H GF L L H K
Sbjct: 8 LCRPFEESGTCKYGEKCQFAH------GFHELRSLTRHPK 41
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 35/171 (20%)
Query: 122 CMYGEKCKFLHSW-----------TVGDGFKLLTQ-LEG---------------HQKVVS 154
+GE KF+HS T GDG +L ++G H V
Sbjct: 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243
Query: 155 GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-----EVGCMISEGPWIFIGVT 209
G+T K+ S S D+T+++W+ A+ + I +G ++G + ++ + I
Sbjct: 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303
Query: 210 NFVKAWNTQTNT-DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257
F+ N + + D G + A++ D LF+ +G I +W +
Sbjct: 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261
Q T +L G + ++YAM G D LL + +QDG ++ W + TTN
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTN 88
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261
Q T +L G + ++YAM G D LL + +QDG ++ W + TTN
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTN 88
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261
Q T +L G + ++YAM G D LL + +QDG ++ W + TTN
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTN 99
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 19/141 (13%)
Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
F++ + H+ V+ +++ + +G KD+ + +WD + G I+
Sbjct: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA 262
Query: 200 EGP---WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN----------------D 240
P W+ +G VK +N T + + + A G
Sbjct: 263 FNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322
Query: 241 LLFAGTQDGAILAWKFNVTTN 261
LFAG DG I + F + N
Sbjct: 323 KLFAGFTDGVIRTFSFETSAN 343
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 34/155 (21%)
Query: 146 LEGHQ----KVVSGITLPSGSDK--LYSGSKDETVRVWDCASGQCAGVINLG-------- 191
LEGH +V+G + D L SGS+D+TV +W + G +
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 192 --------GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND-- 240
+ C W ++ W+ +T T G +VY++A D
Sbjct: 77 HFVSDLALSQENCFAISSSW-----DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274
+L AG + L +N+ C +A + H+D
Sbjct: 132 QILSAGAEREIKL---WNILGECKFSSAEKENHSD 163
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187
W +G +L T L+GH + I + + +GS D ++++WD ++GQC
Sbjct: 59 WYSLNGERLGT-LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
+L GH++ ++ + D L+S SKD + VW +G+ G ++
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD 71
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179
+ +L+GH V +T+ + S + DET+R+W C
Sbjct: 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183
G + +H V + L GH + V G+ L SG D V VW A G+
Sbjct: 205 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
+ TQ +G K V+ S G+ D +R+W+ SG C ++ +V C I
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV-CSIL 327
Query: 200 EGP 202
P
Sbjct: 328 WSP 330
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179
+ +L+GH V +T+ + S + DET+R+W C
Sbjct: 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
+ TQ +G K V+ S G+ D +R+W+ SG C ++ +V C I
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV-CSIL 247
Query: 200 EGP 202
P
Sbjct: 248 WSP 250
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183
G + +H V + L GH + V G+ L SG D V VW A G+
Sbjct: 125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179
+ +L+GH V +T+ + S + DET+R+W C
Sbjct: 368 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 404
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183
G + +H V + L GH + V G+ L SG D V VW A G+
Sbjct: 216 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 274
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
+TV G + +T L+GH K V S +LYSGS+D + W
Sbjct: 319 YTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180
H +VS +++ S + SGSKD ++VWD A
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 145 QLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEV----GCMIS 199
+L GHQK G++ S S L S S D TV +WD +G G I + ++
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 200 EGPWIFIGVTNF--------VKAWNTQTNT 221
+ W + + F + W+T++NT
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNT 263
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
+LL L GH V G+ + S S D+TV++W+
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
+LL L GH V G+ + S S D+TV++W+
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
+LL L GH V G+ + S S D+TV++W+
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
+LL L GH V G+ + S S D+TV++W+
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
+LL L GH V+G+ + S S D+TV++W+
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
G K +LE H V G+ + S S D+TV++W+
Sbjct: 5 GVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN 44
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
+LL L GH V G+ + S S D+TV++W+
Sbjct: 540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 145 QLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEV----GCMIS 199
+L GHQK G++ S S L S S D TV +WD +G G I + ++
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 200 EGPWIFIGVTNF--------VKAWNTQTNT 221
+ W + + F + W+T++NT
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNT 263
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 20/156 (12%)
Query: 137 GDGFKLLTQLEGHQKVVSGITLPSG---SDKLYSGSKDETVRVWDCASGQCA-----GVI 188
G + L +E Q+ V G S K + D T+RVWD + +C
Sbjct: 236 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 295
Query: 189 NLGGEVGCMISEGPWIFI-----GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLF 243
LG + +++ G I G NF + + + ++SG + A+ V + L
Sbjct: 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK--TISGHNKGITALTV--NPLI 351
Query: 244 AGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAH 279
+G+ DG I+ W +++ + ++L V D+++A
Sbjct: 352 SGSYDGRIMEWS---SSSMHQDHSNLIVSLDNSKAQ 384
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
+L EGH+ V I L D + G +D TVR+W +G VI L
Sbjct: 217 VLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVITL 264
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
Nup475TTPTIS11
Length = 77
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWT 135
N KT++ + +QG C YG +C F+H+ T
Sbjct: 43 NRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 100 SNINNRAVIKTDILCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK 151
S++ + KT+ LCR + + G C YG KC+F H G L Q H K
Sbjct: 2 SHMTTSSRYKTE-LCRTYSESGRCRYGAKCQFAH------GLGELRQANRHPK 47
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLY-SGSKDETVRVWDCASGQC 184
W V G +LL GH V + L PS + + SG D+ VWD SGQC
Sbjct: 181 WDVESG-QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 146 LEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQ 183
L GH+ S +P +L +GS D+T +WD +GQ
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 137 GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAGVIN 189
G+ ++ ++ L+ H + V + L S S D+TVR+W +C V+N
Sbjct: 140 GEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 145 QLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
+L GHQK G++ P+ S L S S D T+ +WD ++ G +
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKV 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,542,613
Number of Sequences: 62578
Number of extensions: 324867
Number of successful extensions: 934
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 257
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)