Query 021744
Match_columns 308
No_of_seqs 363 out of 2698
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 05:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.8E-42 6.1E-47 276.3 23.5 256 25-298 126-478 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-41 2.4E-46 275.8 18.9 255 26-298 187-457 (459)
3 KOG0271 Notchless-like WD40 re 100.0 9E-39 1.9E-43 256.2 21.6 243 62-308 109-406 (480)
4 KOG0286 G-protein beta subunit 100.0 1.3E-36 2.9E-41 235.9 27.1 255 26-297 67-341 (343)
5 KOG0315 G-protein beta subunit 100.0 2.6E-36 5.6E-41 229.5 25.2 269 23-307 7-296 (311)
6 KOG0279 G protein beta subunit 100.0 3.2E-36 7E-41 232.3 25.9 261 25-299 27-311 (315)
7 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-37 2.6E-42 252.4 16.0 217 25-255 230-458 (459)
8 KOG0295 WD40 repeat-containing 100.0 8E-36 1.7E-40 237.8 21.1 248 27-291 121-395 (406)
9 KOG0279 G protein beta subunit 100.0 4.9E-34 1.1E-38 220.3 24.3 239 59-304 6-267 (315)
10 KOG0263 Transcription initiati 100.0 3E-34 6.5E-39 249.0 22.0 238 20-259 384-651 (707)
11 KOG0281 Beta-TrCP (transducin 100.0 2.1E-34 4.5E-39 228.8 14.6 256 26-299 207-475 (499)
12 KOG0285 Pleiotropic regulator 100.0 6.7E-33 1.5E-37 220.9 23.0 261 26-301 163-439 (460)
13 KOG0266 WD40 repeat-containing 100.0 4.4E-32 9.5E-37 239.1 27.5 264 23-301 168-454 (456)
14 KOG0284 Polyadenylation factor 100.0 2.3E-33 5E-38 226.8 15.2 248 26-291 108-369 (464)
15 KOG0286 G-protein beta subunit 100.0 1.9E-31 4.2E-36 207.3 25.1 235 62-303 49-305 (343)
16 KOG0295 WD40 repeat-containing 100.0 1.3E-32 2.9E-37 219.5 18.9 241 60-305 100-370 (406)
17 KOG0263 Transcription initiati 100.0 1.5E-32 3.3E-37 238.5 20.4 223 71-298 383-648 (707)
18 KOG0273 Beta-transducin family 100.0 1.8E-31 3.8E-36 219.5 25.5 247 25-291 246-512 (524)
19 KOG0285 Pleiotropic regulator 100.0 3.8E-32 8.3E-37 216.6 19.8 235 62-303 145-391 (460)
20 KOG0313 Microtubule binding pr 100.0 1.4E-31 3.1E-36 214.7 23.0 258 25-300 114-417 (423)
21 KOG0265 U5 snRNP-specific prot 100.0 3.3E-31 7.1E-36 206.7 22.7 257 25-299 58-336 (338)
22 KOG0265 U5 snRNP-specific prot 100.0 5.5E-31 1.2E-35 205.4 21.4 239 63-302 42-297 (338)
23 KOG0319 WD40-repeat-containing 100.0 3.7E-31 8.1E-36 228.1 22.0 227 23-258 374-620 (775)
24 KOG0273 Beta-transducin family 100.0 1.3E-30 2.8E-35 214.4 24.0 272 27-308 192-491 (524)
25 KOG0282 mRNA splicing factor [ 100.0 1.3E-31 2.8E-36 220.9 17.6 256 25-298 226-502 (503)
26 KOG0315 G-protein beta subunit 100.0 1.8E-30 4E-35 197.7 22.2 219 81-301 14-245 (311)
27 KOG0316 Conserved WD40 repeat- 100.0 3.1E-30 6.8E-35 195.0 21.0 247 25-291 28-289 (307)
28 KOG0296 Angio-associated migra 100.0 9E-30 1.9E-34 203.4 23.6 258 11-291 66-387 (399)
29 KOG0318 WD40 repeat stress pro 100.0 5.5E-29 1.2E-33 207.4 29.0 269 25-298 70-389 (603)
30 cd00200 WD40 WD40 domain, foun 100.0 8.7E-29 1.9E-33 205.3 30.2 254 26-297 21-287 (289)
31 KOG0293 WD40 repeat-containing 100.0 1.8E-30 3.8E-35 210.5 19.0 264 23-301 233-513 (519)
32 KOG0278 Serine/threonine kinas 100.0 5.4E-31 1.2E-35 200.8 15.0 259 26-302 29-298 (334)
33 KOG0266 WD40 repeat-containing 100.0 5E-29 1.1E-33 219.7 28.3 227 71-301 164-409 (456)
34 KOG0645 WD40 repeat protein [G 100.0 1.7E-28 3.7E-33 189.0 26.5 274 11-299 16-309 (312)
35 KOG0291 WD40-repeat-containing 100.0 7.4E-29 1.6E-33 214.6 27.3 258 26-299 277-548 (893)
36 KOG0318 WD40 repeat stress pro 100.0 9.3E-29 2E-33 206.1 26.4 261 26-299 202-558 (603)
37 KOG0291 WD40-repeat-containing 100.0 7.7E-29 1.7E-33 214.5 26.5 222 25-259 361-614 (893)
38 KOG0319 WD40-repeat-containing 100.0 3.5E-29 7.6E-34 216.1 23.4 257 26-299 336-617 (775)
39 KOG0274 Cdc4 and related F-box 100.0 4.2E-29 9E-34 220.3 24.2 254 26-300 218-483 (537)
40 PLN00181 protein SPA1-RELATED; 100.0 6.5E-28 1.4E-32 227.2 32.7 266 26-298 495-790 (793)
41 KOG0316 Conserved WD40 repeat- 100.0 6.5E-29 1.4E-33 187.9 20.2 229 63-299 12-255 (307)
42 KOG0284 Polyadenylation factor 100.0 3.7E-30 8.1E-35 208.3 13.7 214 71-291 101-325 (464)
43 KOG0281 Beta-TrCP (transducin 100.0 2.5E-30 5.5E-35 205.7 12.6 217 26-260 247-480 (499)
44 KOG0277 Peroxisomal targeting 100.0 5.1E-29 1.1E-33 190.3 17.8 224 71-299 65-307 (311)
45 PLN00181 protein SPA1-RELATED; 100.0 9.9E-28 2.1E-32 226.0 29.5 235 64-299 479-736 (793)
46 KOG0276 Vesicle coat complex C 100.0 3.3E-28 7.1E-33 206.7 22.8 251 26-291 25-288 (794)
47 PTZ00421 coronin; Provisional 100.0 8.9E-27 1.9E-31 205.1 32.0 254 26-284 32-315 (493)
48 KOG0310 Conserved WD40 repeat- 100.0 7.6E-28 1.6E-32 199.0 23.4 253 26-298 40-306 (487)
49 KOG0274 Cdc4 and related F-box 100.0 1.5E-28 3.3E-33 216.8 20.6 226 25-270 260-491 (537)
50 KOG0283 WD40 repeat-containing 100.0 7.5E-28 1.6E-32 211.0 22.9 229 66-300 265-575 (712)
51 PTZ00420 coronin; Provisional 100.0 5.6E-27 1.2E-31 207.6 28.5 237 32-285 50-319 (568)
52 KOG0647 mRNA export protein (c 100.0 2.5E-27 5.5E-32 185.2 22.2 243 26-288 40-309 (347)
53 KOG0292 Vesicle coat complex C 100.0 3.9E-27 8.5E-32 207.2 25.5 256 26-299 21-321 (1202)
54 cd00200 WD40 WD40 domain, foun 100.0 3E-26 6.5E-31 190.0 28.6 231 64-300 5-248 (289)
55 KOG1036 Mitotic spindle checkp 100.0 7.8E-27 1.7E-31 183.0 22.0 213 71-291 18-293 (323)
56 KOG0275 Conserved WD40 repeat- 100.0 9.5E-28 2.1E-32 189.6 15.9 256 25-290 224-497 (508)
57 KOG0645 WD40 repeat protein [G 100.0 5.8E-26 1.3E-30 175.1 25.1 227 63-299 9-259 (312)
58 KOG0299 U3 snoRNP-associated p 100.0 1.5E-26 3.3E-31 190.1 23.3 263 26-291 154-444 (479)
59 KOG0276 Vesicle coat complex C 100.0 1.2E-26 2.6E-31 197.3 22.0 223 71-299 18-255 (794)
60 KOG0643 Translation initiation 100.0 4.8E-27 1.1E-31 180.8 17.8 257 25-295 21-311 (327)
61 KOG0305 Anaphase promoting com 100.0 2E-26 4.3E-31 196.9 22.9 254 29-299 190-461 (484)
62 KOG0278 Serine/threonine kinas 100.0 1.6E-27 3.4E-32 182.0 14.0 221 26-260 71-300 (334)
63 KOG0292 Vesicle coat complex C 100.0 1.1E-26 2.4E-31 204.4 21.3 234 71-308 14-289 (1202)
64 KOG0306 WD40-repeat-containing 100.0 6.1E-26 1.3E-30 196.5 25.0 260 27-305 385-668 (888)
65 KOG0288 WD40 repeat protein Ti 100.0 4.8E-27 1.1E-31 190.6 16.2 246 27-291 188-450 (459)
66 KOG0313 Microtubule binding pr 99.9 7.3E-26 1.6E-30 182.0 21.1 221 28-258 161-419 (423)
67 KOG0275 Conserved WD40 repeat- 99.9 9E-27 2E-31 184.1 15.1 223 71-299 218-465 (508)
68 KOG1407 WD40 repeat protein [F 99.9 3.1E-25 6.7E-30 170.3 22.0 248 25-291 31-291 (313)
69 KOG0301 Phospholipase A2-activ 99.9 1.8E-25 3.8E-30 192.1 22.9 253 26-301 25-288 (745)
70 KOG0306 WD40-repeat-containing 99.9 2.8E-25 6E-30 192.5 23.9 263 29-305 338-625 (888)
71 KOG0308 Conserved WD40 repeat- 99.9 8.8E-26 1.9E-30 192.7 20.2 234 20-259 31-287 (735)
72 KOG1446 Histone H3 (Lys4) meth 99.9 3.7E-24 8E-29 168.7 26.0 229 71-305 19-268 (311)
73 KOG0973 Histone transcription 99.9 1.8E-24 4E-29 194.5 26.4 282 5-299 10-353 (942)
74 KOG0647 mRNA export protein (c 99.9 2.1E-24 4.6E-29 168.9 22.5 226 71-300 32-280 (347)
75 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-23 2.5E-28 165.9 26.7 258 23-299 23-303 (311)
76 PTZ00421 coronin; Provisional 99.9 2.3E-23 5E-28 183.6 31.3 231 72-305 26-296 (493)
77 KOG1407 WD40 repeat protein [F 99.9 3.2E-24 7E-29 164.8 21.4 229 63-297 15-257 (313)
78 KOG0293 WD40 repeat-containing 99.9 3.4E-25 7.5E-30 180.0 17.0 235 10-258 260-514 (519)
79 KOG0294 WD40 repeat-containing 99.9 1.6E-23 3.4E-28 165.0 25.7 262 29-299 4-279 (362)
80 KOG0639 Transducin-like enhanc 99.9 5.3E-25 1.1E-29 183.1 18.1 252 26-291 431-693 (705)
81 KOG0296 Angio-associated migra 99.9 3.1E-24 6.8E-29 171.9 21.9 231 61-299 57-354 (399)
82 KOG0305 Anaphase promoting com 99.9 2.7E-24 5.8E-29 183.9 21.9 220 25-259 228-463 (484)
83 PTZ00420 coronin; Provisional 99.9 2.8E-23 6E-28 184.2 28.7 216 82-301 49-293 (568)
84 KOG0772 Uncharacterized conser 99.9 3.1E-24 6.8E-29 178.9 21.0 266 25-299 178-485 (641)
85 KOG0289 mRNA splicing factor [ 99.9 9.4E-24 2E-28 172.7 23.3 223 71-299 224-460 (506)
86 KOG1408 WD40 repeat protein [F 99.9 3.4E-24 7.4E-29 185.1 21.7 271 26-301 392-713 (1080)
87 KOG0264 Nucleosome remodeling 99.9 2.5E-24 5.3E-29 176.9 20.0 231 26-258 137-405 (422)
88 KOG0772 Uncharacterized conser 99.9 2.4E-24 5.1E-29 179.7 19.9 223 65-291 164-428 (641)
89 KOG0277 Peroxisomal targeting 99.9 3E-24 6.5E-29 164.4 18.5 225 71-298 13-262 (311)
90 KOG0641 WD40 repeat protein [G 99.9 1.9E-22 4.2E-27 152.3 27.8 265 26-295 44-343 (350)
91 KOG0300 WD40 repeat-containing 99.9 2.1E-24 4.5E-29 170.3 17.9 246 26-284 160-456 (481)
92 KOG0282 mRNA splicing factor [ 99.9 4.1E-25 8.9E-30 182.7 13.6 234 63-299 209-460 (503)
93 KOG0283 WD40 repeat-containing 99.9 1E-23 2.2E-28 185.2 23.0 191 64-258 365-577 (712)
94 KOG0299 U3 snoRNP-associated p 99.9 7.3E-24 1.6E-28 174.4 20.0 233 66-303 140-412 (479)
95 KOG0289 mRNA splicing factor [ 99.9 4.9E-23 1.1E-27 168.5 23.9 249 27-291 232-495 (506)
96 KOG0640 mRNA cleavage stimulat 99.9 6.5E-24 1.4E-28 167.0 17.9 270 23-297 121-422 (430)
97 KOG0264 Nucleosome remodeling 99.9 1.3E-23 2.7E-28 172.7 20.2 231 71-301 129-404 (422)
98 KOG0288 WD40 repeat protein Ti 99.9 8.1E-25 1.8E-29 177.7 13.0 234 65-304 172-420 (459)
99 KOG0269 WD40 repeat-containing 99.9 1.6E-24 3.5E-29 188.3 15.7 225 25-259 99-342 (839)
100 KOG0267 Microtubule severing p 99.9 3.1E-25 6.8E-30 191.5 9.5 242 27-292 5-258 (825)
101 KOG1332 Vesicle coat complex C 99.9 1.1E-23 2.4E-28 160.4 16.8 236 26-299 23-284 (299)
102 KOG1539 WD repeat protein [Gen 99.9 5.9E-23 1.3E-27 180.0 23.5 282 17-304 248-651 (910)
103 KOG0310 Conserved WD40 repeat- 99.9 4.5E-23 9.7E-28 170.9 21.0 229 65-299 24-266 (487)
104 KOG0643 Translation initiation 99.9 1.3E-22 2.8E-27 156.6 21.3 220 62-289 4-248 (327)
105 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-21 3.5E-26 163.9 30.2 252 27-299 2-277 (300)
106 KOG0294 WD40 repeat-containing 99.9 6.6E-23 1.4E-27 161.5 19.2 218 25-259 52-283 (362)
107 KOG0640 mRNA cleavage stimulat 99.9 2.8E-23 6.1E-28 163.4 16.6 200 104-307 108-343 (430)
108 KOG0308 Conserved WD40 repeat- 99.9 1.5E-23 3.2E-28 179.3 16.2 218 76-297 35-281 (735)
109 KOG0300 WD40 repeat-containing 99.9 1.8E-22 3.8E-27 159.5 19.2 223 61-288 141-414 (481)
110 KOG0301 Phospholipase A2-activ 99.9 9.1E-23 2E-27 175.6 18.7 233 62-306 8-254 (745)
111 KOG2096 WD40 repeat protein [G 99.9 3.8E-22 8.3E-27 157.6 20.5 240 62-302 80-363 (420)
112 KOG2106 Uncharacterized conser 99.9 2.7E-21 5.8E-26 161.2 26.5 256 27-298 214-518 (626)
113 KOG0646 WD40 repeat protein [G 99.9 2.5E-22 5.3E-27 165.7 20.1 242 27-283 51-330 (476)
114 KOG0268 Sof1-like rRNA process 99.9 7.4E-23 1.6E-27 164.0 15.8 251 27-298 80-344 (433)
115 KOG1274 WD40 repeat protein [G 99.9 4E-21 8.7E-26 170.3 25.4 242 26-288 25-286 (933)
116 KOG2048 WD40 repeat protein [G 99.9 2.1E-20 4.6E-25 160.7 26.0 260 26-299 37-317 (691)
117 KOG0270 WD40 repeat-containing 99.9 6.2E-21 1.4E-25 156.6 20.5 237 21-259 187-451 (463)
118 KOG0641 WD40 repeat protein [G 99.9 5.7E-20 1.2E-24 139.0 23.6 224 71-298 37-300 (350)
119 KOG4328 WD40 protein [Function 99.9 9.4E-21 2E-25 156.2 20.3 278 11-303 188-497 (498)
120 KOG0267 Microtubule severing p 99.9 1.7E-22 3.7E-27 174.7 9.8 211 24-248 38-259 (825)
121 KOG0646 WD40 repeat protein [G 99.9 1.5E-20 3.1E-25 155.4 20.0 260 28-299 9-305 (476)
122 KOG2055 WD40 repeat protein [G 99.9 3.1E-20 6.7E-25 153.3 21.8 252 26-291 225-501 (514)
123 KOG2096 WD40 repeat protein [G 99.9 6.4E-20 1.4E-24 145.1 22.3 267 23-301 95-402 (420)
124 KOG0269 WD40 repeat-containing 99.9 1.9E-21 4.2E-26 169.4 15.0 214 71-288 92-325 (839)
125 KOG4283 Transcription-coupled 99.9 9.5E-20 2.1E-24 142.7 22.4 265 26-297 56-361 (397)
126 KOG0302 Ribosome Assembly prot 99.9 7.4E-21 1.6E-25 153.3 16.5 189 71-259 156-380 (440)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.2E-19 7E-24 149.9 27.5 234 28-282 45-300 (300)
128 KOG0268 Sof1-like rRNA process 99.9 2.3E-21 5E-26 155.5 13.4 234 59-302 57-303 (433)
129 KOG0270 WD40 repeat-containing 99.9 1.1E-20 2.4E-25 155.1 17.7 210 78-290 192-436 (463)
130 KOG0639 Transducin-like enhanc 99.9 4.1E-21 8.9E-26 160.1 14.1 220 66-291 417-652 (705)
131 KOG0302 Ribosome Assembly prot 99.9 4.6E-20 1E-24 148.8 19.6 225 26-250 165-432 (440)
132 KOG4378 Nuclear protein COP1 [ 99.9 2.9E-20 6.4E-25 154.8 17.9 244 28-284 49-305 (673)
133 KOG4378 Nuclear protein COP1 [ 99.9 3.9E-20 8.5E-25 154.1 18.5 246 31-291 7-269 (673)
134 KOG0973 Histone transcription 99.9 4.6E-20 9.9E-25 166.5 19.7 217 62-282 6-275 (942)
135 KOG0321 WD40 repeat-containing 99.9 6E-20 1.3E-24 157.1 19.2 225 25-259 111-393 (720)
136 KOG2106 Uncharacterized conser 99.9 9.8E-19 2.1E-23 146.1 25.7 256 26-303 168-481 (626)
137 KOG2445 Nuclear pore complex c 99.9 3.5E-19 7.6E-24 140.3 21.4 234 65-299 10-316 (361)
138 KOG0321 WD40 repeat-containing 99.8 2.4E-19 5.2E-24 153.4 19.6 265 26-299 64-389 (720)
139 KOG2055 WD40 repeat protein [G 99.8 2E-19 4.3E-24 148.6 18.2 224 66-290 212-453 (514)
140 KOG4283 Transcription-coupled 99.8 1.9E-19 4.1E-24 141.0 16.9 195 105-299 40-274 (397)
141 KOG1063 RNA polymerase II elon 99.8 6E-19 1.3E-23 152.3 21.2 270 26-299 206-602 (764)
142 KOG0307 Vesicle coat complex C 99.8 3E-20 6.5E-25 168.4 14.0 243 11-260 65-330 (1049)
143 KOG1274 WD40 repeat protein [G 99.8 2.5E-18 5.4E-23 152.8 24.9 222 71-299 18-260 (933)
144 KOG2048 WD40 repeat protein [G 99.8 5.3E-18 1.2E-22 146.2 25.8 221 71-296 30-270 (691)
145 KOG0303 Actin-binding protein 99.8 1.6E-18 3.5E-23 140.7 21.1 197 61-260 74-297 (472)
146 KOG0649 WD40 repeat protein [G 99.8 4.2E-17 9.2E-22 124.8 27.2 229 24-258 20-275 (325)
147 KOG2919 Guanine nucleotide-bin 99.8 4.8E-19 1E-23 140.4 17.2 230 12-248 107-361 (406)
148 KOG1273 WD40 repeat protein [G 99.8 9.1E-19 2E-23 138.4 18.1 192 111-303 26-282 (405)
149 KOG2445 Nuclear pore complex c 99.8 1.7E-18 3.6E-23 136.4 18.8 238 26-273 25-333 (361)
150 KOG1408 WD40 repeat protein [F 99.8 1.9E-18 4.2E-23 149.9 18.2 220 26-258 471-714 (1080)
151 KOG2919 Guanine nucleotide-bin 99.8 1.2E-17 2.6E-22 132.6 21.1 273 26-301 61-369 (406)
152 KOG1332 Vesicle coat complex C 99.8 5.6E-19 1.2E-23 134.9 12.8 194 107-302 10-242 (299)
153 KOG1539 WD repeat protein [Gen 99.8 2E-17 4.4E-22 145.7 23.7 266 27-304 215-611 (910)
154 KOG1034 Transcriptional repres 99.8 8.8E-18 1.9E-22 133.5 18.7 225 71-299 94-381 (385)
155 KOG1036 Mitotic spindle checkp 99.8 4.5E-17 9.7E-22 128.5 20.7 185 107-297 12-203 (323)
156 KOG1009 Chromatin assembly com 99.8 7E-17 1.5E-21 131.7 20.7 255 28-291 28-361 (434)
157 KOG1273 WD40 repeat protein [G 99.8 1.2E-16 2.5E-21 126.7 21.1 256 26-299 35-320 (405)
158 KOG1188 WD40 repeat protein [G 99.8 8.6E-17 1.9E-21 128.5 17.9 261 26-299 40-344 (376)
159 PRK01742 tolB translocation pr 99.8 4.1E-17 8.9E-22 143.7 16.4 256 8-283 152-426 (429)
160 KOG4328 WD40 protein [Function 99.7 1.4E-16 3E-21 131.8 17.5 221 71-291 191-439 (498)
161 KOG0650 WD40 repeat nucleolar 99.7 6E-17 1.3E-21 138.1 15.7 260 25-297 411-731 (733)
162 KOG0650 WD40 repeat nucleolar 99.7 1.7E-16 3.6E-21 135.4 18.2 229 64-297 396-676 (733)
163 COG2319 FOG: WD40 repeat [Gene 99.7 9.7E-15 2.1E-19 127.5 28.6 250 25-290 76-346 (466)
164 KOG0642 Cell-cycle nuclear pro 99.7 6.7E-17 1.4E-21 136.9 13.8 205 63-272 289-572 (577)
165 KOG1517 Guanine nucleotide bin 99.7 3.3E-16 7.1E-21 141.5 18.9 234 26-259 1123-1383(1387)
166 KOG1188 WD40 repeat protein [G 99.7 2.1E-16 4.6E-21 126.3 15.9 180 121-302 42-245 (376)
167 KOG0307 Vesicle coat complex C 99.7 5.7E-17 1.2E-21 147.5 13.5 225 71-300 69-328 (1049)
168 KOG1007 WD repeat protein TSSC 99.7 4.7E-16 1E-20 121.8 16.5 200 85-288 38-274 (370)
169 PRK11028 6-phosphogluconolacto 99.7 2.4E-14 5.2E-19 122.2 27.6 259 29-298 5-303 (330)
170 KOG0303 Actin-binding protein 99.7 1.6E-15 3.6E-20 123.5 18.7 185 103-291 76-282 (472)
171 KOG1034 Transcriptional repres 99.7 1.7E-16 3.6E-21 126.4 11.7 220 24-257 103-383 (385)
172 KOG1063 RNA polymerase II elon 99.7 4.2E-15 9E-20 128.9 20.2 257 25-291 68-426 (764)
173 KOG1007 WD repeat protein TSSC 99.7 1.4E-15 3.1E-20 119.2 15.4 216 28-258 137-362 (370)
174 KOG0644 Uncharacterized conser 99.7 5.7E-17 1.2E-21 143.0 8.2 226 65-300 187-467 (1113)
175 KOG4227 WD40 repeat protein [G 99.7 8.6E-15 1.9E-19 119.4 20.0 229 62-291 50-376 (609)
176 KOG0771 Prolactin regulatory e 99.7 4.6E-15 9.9E-20 121.8 17.3 172 111-288 147-340 (398)
177 KOG0771 Prolactin regulatory e 99.7 1.5E-15 3.2E-20 124.7 14.2 188 23-258 153-355 (398)
178 KOG0322 G-protein beta subunit 99.7 8.8E-15 1.9E-19 113.4 16.3 221 24-256 23-322 (323)
179 KOG1445 Tumor-specific antigen 99.7 1.1E-14 2.4E-19 125.4 18.2 221 32-260 599-847 (1012)
180 KOG1963 WD40 repeat protein [G 99.7 2.2E-13 4.7E-18 121.4 26.8 264 25-299 216-536 (792)
181 KOG1587 Cytoplasmic dynein int 99.7 3.8E-14 8.2E-19 125.2 21.9 227 71-299 247-514 (555)
182 KOG0290 Conserved WD40 repeat- 99.6 5E-14 1.1E-18 110.7 19.3 225 71-296 101-360 (364)
183 KOG2110 Uncharacterized conser 99.6 2.4E-13 5.1E-18 110.2 23.4 218 71-299 10-248 (391)
184 KOG1538 Uncharacterized conser 99.6 1.1E-14 2.4E-19 126.1 16.7 209 71-291 17-241 (1081)
185 PRK03629 tolB translocation pr 99.6 8.4E-14 1.8E-18 122.5 20.7 252 8-282 147-427 (429)
186 KOG1538 Uncharacterized conser 99.6 6.3E-14 1.4E-18 121.5 19.2 237 35-295 32-287 (1081)
187 PRK11028 6-phosphogluconolacto 99.6 9.2E-13 2E-17 112.5 26.0 237 26-271 46-318 (330)
188 COG2319 FOG: WD40 repeat [Gene 99.6 2.4E-12 5.3E-17 112.3 27.9 222 64-291 61-303 (466)
189 KOG0322 G-protein beta subunit 99.6 1.2E-13 2.5E-18 107.2 16.3 230 65-298 11-320 (323)
190 KOG1009 Chromatin assembly com 99.6 1.7E-13 3.6E-18 112.3 17.6 149 71-219 18-196 (434)
191 PRK04922 tolB translocation pr 99.6 1.5E-13 3.1E-18 121.5 18.8 202 71-282 208-432 (433)
192 KOG1524 WD40 repeat-containing 99.6 1.4E-13 3E-18 116.5 17.5 206 23-255 72-284 (737)
193 KOG0649 WD40 repeat protein [G 99.6 1.2E-12 2.6E-17 100.6 20.8 222 27-254 73-313 (325)
194 KOG1524 WD40 repeat-containing 99.6 6.3E-14 1.4E-18 118.6 15.2 163 121-291 77-246 (737)
195 KOG2111 Uncharacterized conser 99.6 5.6E-12 1.2E-16 100.5 23.3 219 71-299 10-256 (346)
196 KOG1517 Guanine nucleotide bin 99.6 1.1E-12 2.4E-17 119.2 21.8 226 71-298 1069-1332(1387)
197 KOG1272 WD40-repeat-containing 99.6 1.1E-14 2.5E-19 120.9 8.2 216 71-297 134-360 (545)
198 KOG2321 WD40 repeat protein [G 99.6 6.2E-13 1.3E-17 113.5 18.6 215 71-291 56-332 (703)
199 KOG0642 Cell-cycle nuclear pro 99.6 1.1E-13 2.3E-18 117.8 13.8 226 71-300 233-560 (577)
200 KOG0290 Conserved WD40 repeat- 99.5 3.4E-13 7.3E-18 106.1 13.4 178 26-214 163-361 (364)
201 KOG1240 Protein kinase contain 99.5 2.2E-12 4.7E-17 118.9 20.4 244 9-260 1038-1337(1431)
202 KOG1523 Actin-related protein 99.5 1.5E-12 3.3E-17 103.7 17.0 191 109-299 11-234 (361)
203 KOG1334 WD40 repeat protein [G 99.5 4.3E-13 9.4E-18 112.3 14.6 265 23-302 151-469 (559)
204 KOG1445 Tumor-specific antigen 99.5 2.4E-13 5.2E-18 117.4 13.3 179 73-291 586-783 (1012)
205 PRK02889 tolB translocation pr 99.5 1.3E-12 2.8E-17 115.1 18.3 203 71-283 200-425 (427)
206 KOG3881 Uncharacterized conser 99.5 5.9E-12 1.3E-16 102.9 19.4 182 77-259 115-322 (412)
207 PRK01742 tolB translocation pr 99.5 1.6E-12 3.4E-17 114.7 17.4 220 4-240 190-426 (429)
208 KOG1310 WD40 repeat protein [G 99.5 4.7E-13 1E-17 113.7 12.0 124 58-181 40-179 (758)
209 PRK05137 tolB translocation pr 99.5 5.1E-12 1.1E-16 111.8 19.0 201 71-282 206-432 (435)
210 KOG3881 Uncharacterized conser 99.5 4.1E-12 9E-17 103.8 15.9 207 26-240 115-342 (412)
211 KOG1963 WD40 repeat protein [G 99.5 1.3E-10 2.8E-15 104.0 26.4 269 26-307 27-383 (792)
212 KOG1587 Cytoplasmic dynein int 99.5 1.1E-11 2.4E-16 109.8 19.7 228 25-258 254-517 (555)
213 KOG4227 WD40 repeat protein [G 99.5 3.7E-12 8E-17 104.3 15.0 185 103-290 51-262 (609)
214 PRK04922 tolB translocation pr 99.4 4.5E-11 9.8E-16 105.7 23.0 207 87-303 184-413 (433)
215 PF02239 Cytochrom_D1: Cytochr 99.4 7.2E-11 1.6E-15 101.3 22.5 250 26-291 48-334 (369)
216 PRK05137 tolB translocation pr 99.4 8.4E-11 1.8E-15 104.1 23.5 207 86-302 181-413 (435)
217 PRK03629 tolB translocation pr 99.4 4.7E-11 1E-15 105.2 21.5 220 4-239 185-427 (429)
218 TIGR03300 assembly_YfgL outer 99.4 6.6E-10 1.4E-14 96.7 28.0 253 26-308 105-377 (377)
219 KOG2394 WD40 protein DMR-N9 [G 99.4 4.1E-11 8.9E-16 101.8 18.2 184 76-259 183-454 (636)
220 PRK00178 tolB translocation pr 99.4 6.2E-11 1.3E-15 105.0 19.9 202 71-282 203-427 (430)
221 PRK04792 tolB translocation pr 99.4 7.9E-11 1.7E-15 104.3 20.4 202 71-282 222-446 (448)
222 KOG1523 Actin-related protein 99.4 1.6E-10 3.4E-15 92.4 18.7 218 71-291 15-268 (361)
223 KOG1272 WD40-repeat-containing 99.4 8.4E-12 1.8E-16 104.1 11.2 230 23-254 138-406 (545)
224 TIGR02800 propeller_TolB tol-p 99.3 8E-10 1.7E-14 97.6 23.8 206 86-301 169-397 (417)
225 KOG0974 WD-repeat protein WDR6 99.3 5.5E-11 1.2E-15 108.1 16.3 180 77-258 98-289 (967)
226 KOG2321 WD40 repeat protein [G 99.3 1.1E-10 2.4E-15 100.0 17.1 249 2-259 47-345 (703)
227 KOG2139 WD40 repeat protein [G 99.3 6E-10 1.3E-14 90.6 20.4 218 71-291 103-364 (445)
228 TIGR02800 propeller_TolB tol-p 99.3 1.4E-10 3E-15 102.4 18.4 183 71-258 194-398 (417)
229 PF08662 eIF2A: Eukaryotic tra 99.3 4E-10 8.7E-15 88.1 18.8 128 129-258 37-180 (194)
230 PF02239 Cytochrom_D1: Cytochr 99.3 2.7E-09 5.9E-14 91.7 25.3 165 123-291 10-190 (369)
231 PF08662 eIF2A: Eukaryotic tra 99.3 3.1E-10 6.8E-15 88.7 17.3 147 71-221 10-182 (194)
232 KOG0974 WD-repeat protein WDR6 99.3 1.9E-11 4E-16 111.1 11.3 141 26-181 145-289 (967)
233 KOG1310 WD40 repeat protein [G 99.3 1.6E-11 3.4E-16 104.6 10.1 120 141-260 41-181 (758)
234 KOG4547 WD40 repeat-containing 99.3 7.6E-10 1.6E-14 95.2 20.2 230 25-285 4-250 (541)
235 KOG2394 WD40 protein DMR-N9 [G 99.3 4.5E-10 9.7E-15 95.7 18.6 206 72-282 127-384 (636)
236 KOG4497 Uncharacterized conser 99.3 1.6E-09 3.4E-14 87.2 20.6 245 27-291 62-421 (447)
237 KOG1334 WD40 repeat protein [G 99.3 1.2E-10 2.5E-15 98.0 14.8 240 63-302 137-425 (559)
238 PRK02889 tolB translocation pr 99.3 2.8E-09 6E-14 94.1 24.1 203 87-300 176-402 (427)
239 KOG2111 Uncharacterized conser 99.3 5.5E-09 1.2E-13 83.7 22.9 169 87-259 75-258 (346)
240 KOG2110 Uncharacterized conser 99.3 1.9E-09 4E-14 87.9 20.1 187 114-308 11-213 (391)
241 KOG0644 Uncharacterized conser 99.3 7.4E-12 1.6E-16 111.4 6.4 180 104-289 186-412 (1113)
242 KOG2139 WD40 repeat protein [G 99.3 9E-10 2E-14 89.6 17.7 182 111-299 101-309 (445)
243 KOG1240 Protein kinase contain 99.2 1.2E-09 2.6E-14 101.3 19.2 196 65-260 1045-1276(1431)
244 KOG4547 WD40 repeat-containing 99.2 4E-09 8.6E-14 90.9 20.4 170 123-299 9-220 (541)
245 KOG1354 Serine/threonine prote 99.2 5.5E-09 1.2E-13 84.6 19.2 275 25-299 36-432 (433)
246 PRK00178 tolB translocation pr 99.2 1.3E-08 2.8E-13 90.2 23.6 205 88-302 180-407 (430)
247 TIGR03300 assembly_YfgL outer 99.2 5.2E-08 1.1E-12 84.8 26.7 217 26-260 65-300 (377)
248 PF10282 Lactonase: Lactonase, 99.2 1.7E-07 3.7E-12 80.5 29.3 232 71-302 41-325 (345)
249 KOG1409 Uncharacterized conser 99.2 4.7E-09 1E-13 84.9 16.8 235 62-299 18-268 (404)
250 KOG1064 RAVE (regulator of V-A 99.1 2E-10 4.2E-15 109.9 10.1 176 26-223 2220-2403(2439)
251 PRK01029 tolB translocation pr 99.1 1E-08 2.2E-13 90.3 20.3 207 71-284 189-426 (428)
252 PRK04792 tolB translocation pr 99.1 1E-08 2.3E-13 90.9 19.9 220 4-239 204-446 (448)
253 KOG1409 Uncharacterized conser 99.1 1.6E-08 3.6E-13 81.9 18.1 94 124-218 170-270 (404)
254 KOG1064 RAVE (regulator of V-A 99.1 3.7E-10 8E-15 108.1 9.7 183 72-270 2214-2407(2439)
255 KOG4497 Uncharacterized conser 99.1 1.9E-08 4.2E-13 81.1 17.5 270 12-301 6-391 (447)
256 PRK01029 tolB translocation pr 99.1 4.2E-08 9.2E-13 86.4 21.1 226 3-239 170-424 (428)
257 PRK11138 outer membrane biogen 99.1 3.1E-07 6.7E-12 80.5 26.4 227 26-270 120-362 (394)
258 PLN02919 haloacid dehalogenase 99.1 1.7E-07 3.7E-12 90.9 26.3 234 22-260 576-891 (1057)
259 TIGR02658 TTQ_MADH_Hv methylam 99.1 6.8E-07 1.5E-11 75.6 26.4 256 26-304 13-335 (352)
260 PF13360 PQQ_2: PQQ-like domai 99.0 1.1E-07 2.4E-12 77.2 21.1 181 74-260 32-233 (238)
261 KOG4714 Nucleoporin [Nuclear s 99.0 6.1E-09 1.3E-13 81.3 11.9 209 17-255 92-316 (319)
262 KOG2041 WD40 repeat protein [G 99.0 4.7E-08 1E-12 86.5 18.6 266 26-299 26-335 (1189)
263 KOG4532 WD40-like repeat conta 99.0 1.8E-07 3.8E-12 73.7 18.8 207 81-291 88-321 (344)
264 KOG0280 Uncharacterized conser 99.0 5.8E-08 1.3E-12 77.2 16.1 209 81-289 89-318 (339)
265 TIGR02658 TTQ_MADH_Hv methylam 99.0 2.4E-06 5.2E-11 72.3 26.9 229 23-269 55-338 (352)
266 COG2706 3-carboxymuconate cycl 99.0 2.3E-06 5E-11 70.3 25.6 218 86-303 15-278 (346)
267 PRK04043 tolB translocation pr 99.0 7E-08 1.5E-12 84.6 18.3 183 71-258 192-401 (419)
268 KOG2315 Predicted translation 99.0 4.8E-07 1E-11 78.0 22.6 210 71-291 130-373 (566)
269 COG2706 3-carboxymuconate cycl 98.9 7.1E-06 1.5E-10 67.4 27.2 228 71-299 44-321 (346)
270 KOG1354 Serine/threonine prote 98.9 5.2E-08 1.1E-12 79.1 14.8 197 111-307 28-310 (433)
271 KOG2695 WD40 repeat protein [G 98.9 8.7E-09 1.9E-13 83.5 9.9 141 123-270 228-385 (425)
272 KOG0280 Uncharacterized conser 98.9 1.3E-07 2.9E-12 75.1 16.0 188 71-258 126-334 (339)
273 PF10282 Lactonase: Lactonase, 98.9 2E-06 4.3E-11 73.9 24.8 189 71-259 91-324 (345)
274 PF00400 WD40: WD domain, G-be 98.9 7.2E-09 1.6E-13 58.4 6.5 38 141-178 2-39 (39)
275 COG4946 Uncharacterized protei 98.9 9.1E-07 2E-11 75.0 20.8 207 74-288 274-504 (668)
276 KOG0309 Conserved WD40 repeat- 98.9 1.9E-08 4.1E-13 89.1 11.2 209 71-285 29-258 (1081)
277 KOG3914 WD repeat protein WDR4 98.8 5.5E-08 1.2E-12 80.4 11.9 152 71-260 67-226 (390)
278 PF15492 Nbas_N: Neuroblastoma 98.8 4.4E-06 9.5E-11 66.7 21.8 232 27-274 9-272 (282)
279 KOG4190 Uncharacterized conser 98.8 1.8E-08 3.9E-13 86.6 9.0 142 117-260 745-909 (1034)
280 KOG0309 Conserved WD40 repeat- 98.8 1.5E-08 3.2E-13 89.9 8.1 195 64-258 110-340 (1081)
281 PRK11138 outer membrane biogen 98.8 1.1E-05 2.4E-10 70.7 26.2 225 26-260 69-315 (394)
282 KOG3914 WD repeat protein WDR4 98.8 9.5E-08 2.1E-12 79.0 11.8 158 20-189 68-232 (390)
283 PRK04043 tolB translocation pr 98.8 1.6E-05 3.5E-10 69.9 26.2 183 110-302 189-401 (419)
284 PLN02919 haloacid dehalogenase 98.8 1.7E-05 3.6E-10 77.4 28.5 222 71-299 572-886 (1057)
285 KOG2041 WD40 repeat protein [G 98.8 3.6E-07 7.8E-12 81.1 14.9 215 71-291 19-277 (1189)
286 KOG4190 Uncharacterized conser 98.8 8E-08 1.7E-12 82.8 10.5 219 26-255 747-986 (1034)
287 KOG2695 WD40 repeat protein [G 98.8 5.8E-08 1.3E-12 78.8 9.2 154 81-238 228-401 (425)
288 PF08450 SGL: SMP-30/Gluconola 98.7 6.8E-05 1.5E-09 61.2 27.5 207 71-289 4-242 (246)
289 PF13360 PQQ_2: PQQ-like domai 98.7 1.5E-05 3.3E-10 64.6 21.8 208 86-302 2-231 (238)
290 KOG0882 Cyclophilin-related pe 98.7 6.7E-07 1.5E-11 75.2 13.4 247 27-306 21-312 (558)
291 KOG4532 WD40-like repeat conta 98.6 4.5E-06 9.7E-11 65.9 14.8 165 121-285 86-263 (344)
292 KOG2315 Predicted translation 98.6 4.8E-05 1E-09 66.0 21.9 126 128-258 250-391 (566)
293 PF00400 WD40: WD domain, G-be 98.5 5.3E-07 1.2E-11 50.6 5.9 32 224-255 6-39 (39)
294 KOG2314 Translation initiation 98.5 4.8E-05 1.1E-09 66.0 19.7 223 66-291 248-511 (698)
295 PF07433 DUF1513: Protein of u 98.4 0.00055 1.2E-08 56.4 24.4 227 62-298 3-282 (305)
296 COG5170 CDC55 Serine/threonine 98.4 7.8E-06 1.7E-10 65.9 12.1 191 110-300 28-310 (460)
297 COG5170 CDC55 Serine/threonine 98.4 1.2E-05 2.7E-10 64.8 13.2 215 25-272 37-321 (460)
298 KOG2066 Vacuolar assembly/sort 98.4 7.8E-05 1.7E-09 67.5 18.8 189 6-219 19-234 (846)
299 COG4946 Uncharacterized protei 98.4 0.00023 4.9E-09 61.0 20.3 158 77-240 331-499 (668)
300 KOG4714 Nucleoporin [Nuclear s 98.3 3.1E-06 6.7E-11 66.5 8.3 157 143-302 82-255 (319)
301 COG5354 Uncharacterized protei 98.3 0.0003 6.5E-09 60.6 19.9 195 87-291 108-334 (561)
302 KOG2066 Vacuolar assembly/sort 98.3 3.8E-05 8.2E-10 69.4 15.0 166 119-299 49-233 (846)
303 COG5354 Uncharacterized protei 98.3 0.00091 2E-08 57.8 22.2 240 35-291 107-378 (561)
304 PF08450 SGL: SMP-30/Gluconola 98.2 0.00085 1.8E-08 54.8 21.5 196 25-238 11-233 (246)
305 PF11768 DUF3312: Protein of u 98.2 0.00013 2.8E-09 64.2 16.7 75 107-184 258-333 (545)
306 KOG1275 PAB-dependent poly(A) 98.2 3E-05 6.5E-10 71.0 12.9 170 81-256 151-341 (1118)
307 KOG2314 Translation initiation 98.2 9.3E-05 2E-09 64.3 14.8 173 111-290 213-411 (698)
308 KOG0882 Cyclophilin-related pe 98.1 2.9E-05 6.2E-10 65.7 10.6 192 106-297 7-227 (558)
309 KOG1275 PAB-dependent poly(A) 98.1 9.1E-05 2E-09 68.0 14.4 173 121-297 149-340 (1118)
310 cd00216 PQQ_DH Dehydrogenases 98.1 0.0053 1.2E-07 55.4 25.9 154 130-291 257-456 (488)
311 PF15492 Nbas_N: Neuroblastoma 98.1 0.0025 5.4E-08 51.3 20.6 183 115-298 4-256 (282)
312 PF08553 VID27: VID27 cytoplas 98.1 0.00016 3.5E-09 67.3 15.8 131 163-297 494-643 (794)
313 PF07433 DUF1513: Protein of u 98.1 0.0032 7E-08 52.0 21.7 214 27-252 18-280 (305)
314 KOG2114 Vacuolar assembly/sort 98.1 0.00068 1.5E-08 62.2 19.2 185 117-307 33-249 (933)
315 cd00216 PQQ_DH Dehydrogenases 98.1 0.0059 1.3E-07 55.1 25.4 228 26-261 61-378 (488)
316 KOG1912 WD40 repeat protein [G 98.1 0.00081 1.8E-08 61.1 18.7 218 60-284 9-284 (1062)
317 PF04053 Coatomer_WDAD: Coatom 98.0 0.0013 2.9E-08 58.0 19.6 138 111-258 35-174 (443)
318 PF06433 Me-amine-dh_H: Methyl 98.0 0.007 1.5E-07 50.7 22.0 191 71-271 99-330 (342)
319 KOG1832 HIV-1 Vpr-binding prot 98.0 1.1E-05 2.3E-10 73.8 5.0 172 108-289 1101-1283(1516)
320 KOG3621 WD40 repeat-containing 97.9 0.0017 3.7E-08 58.4 18.3 110 72-181 39-155 (726)
321 PF04053 Coatomer_WDAD: Coatom 97.9 0.0052 1.1E-07 54.3 21.0 207 71-307 37-259 (443)
322 PF04762 IKI3: IKI3 family; I 97.9 0.011 2.4E-07 57.3 24.8 211 71-285 80-361 (928)
323 KOG1645 RING-finger-containing 97.9 0.00038 8.2E-09 58.4 12.7 158 131-291 175-349 (463)
324 KOG1912 WD40 repeat protein [G 97.9 0.00049 1.1E-08 62.4 13.7 145 111-257 18-186 (1062)
325 KOG1645 RING-finger-containing 97.8 0.0013 2.7E-08 55.4 14.8 72 71-144 198-273 (463)
326 KOG2114 Vacuolar assembly/sort 97.8 0.0029 6.2E-08 58.3 18.1 185 72-259 29-245 (933)
327 smart00320 WD40 WD40 repeats. 97.8 7.2E-05 1.6E-09 40.7 5.5 38 141-178 3-40 (40)
328 KOG1832 HIV-1 Vpr-binding prot 97.8 3.1E-05 6.7E-10 70.9 5.0 145 141-289 1092-1247(1516)
329 PF03178 CPSF_A: CPSF A subuni 97.8 0.012 2.5E-07 50.2 20.6 169 129-301 2-202 (321)
330 PF11768 DUF3312: Protein of u 97.7 0.0037 7.9E-08 55.3 16.7 73 148-221 257-332 (545)
331 PF04762 IKI3: IKI3 family; I 97.7 0.009 2E-07 57.9 20.6 186 71-259 214-458 (928)
332 KOG3617 WD40 and TPR repeat-co 97.7 0.0052 1.1E-07 56.7 17.5 105 72-180 21-131 (1416)
333 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.017 3.8E-07 46.1 20.2 145 72-220 16-167 (354)
334 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.032 7E-07 48.2 21.6 207 71-291 105-346 (353)
335 PF00780 CNH: CNH domain; Int 97.6 0.026 5.5E-07 46.9 21.0 175 121-302 9-218 (275)
336 KOG1008 Uncharacterized conser 97.6 2E-05 4.3E-10 69.6 1.4 184 111-298 59-272 (783)
337 COG0823 TolB Periplasmic compo 97.6 0.0059 1.3E-07 53.7 16.6 165 72-240 198-380 (425)
338 COG0823 TolB Periplasmic compo 97.6 0.0016 3.5E-08 57.2 13.1 142 143-289 185-342 (425)
339 PRK02888 nitrous-oxide reducta 97.6 0.0087 1.9E-07 54.3 17.4 210 72-291 198-450 (635)
340 PF05096 Glu_cyclase_2: Glutam 97.6 0.028 6.1E-07 45.5 19.7 173 71-247 49-251 (264)
341 PF08596 Lgl_C: Lethal giant l 97.6 0.018 3.9E-07 50.2 18.7 216 71-291 6-325 (395)
342 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.0096 2.1E-07 47.5 15.2 125 162-291 23-155 (354)
343 KOG2395 Protein involved in va 97.5 0.0033 7.3E-08 54.9 12.8 131 161-295 344-494 (644)
344 PF06433 Me-amine-dh_H: Methyl 97.3 0.09 1.9E-06 44.3 19.9 171 87-261 17-217 (342)
345 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.026 5.7E-07 39.1 12.7 97 153-253 2-110 (111)
346 PF00780 CNH: CNH domain; Int 97.3 0.084 1.8E-06 43.8 24.3 223 26-271 7-265 (275)
347 PRK02888 nitrous-oxide reducta 97.2 0.024 5.1E-07 51.6 14.9 179 116-299 200-402 (635)
348 KOG3621 WD40 repeat-containing 97.1 0.2 4.3E-06 45.7 22.0 104 24-138 43-155 (726)
349 PF03178 CPSF_A: CPSF A subuni 97.1 0.14 3E-06 43.7 19.4 126 129-258 62-203 (321)
350 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.021 4.5E-07 39.6 11.1 93 75-175 11-109 (111)
351 KOG4640 Anaphase-promoting com 97.1 0.0039 8.5E-08 55.5 9.3 85 111-197 23-111 (665)
352 PHA02713 hypothetical protein; 97.1 0.076 1.6E-06 48.9 18.2 181 76-260 302-536 (557)
353 smart00320 WD40 WD40 repeats. 97.1 0.0018 4E-08 34.7 5.1 32 224-255 7-40 (40)
354 COG3490 Uncharacterized protei 97.1 0.12 2.6E-06 42.1 17.6 105 62-169 66-180 (366)
355 PF08553 VID27: VID27 cytoplas 97.0 0.025 5.3E-07 53.2 14.2 130 126-256 501-646 (794)
356 PF04841 Vps16_N: Vps16, N-ter 97.0 0.22 4.7E-06 44.0 21.9 163 88-259 62-248 (410)
357 KOG4441 Proteins containing BT 96.9 0.34 7.4E-06 44.7 21.4 225 23-260 282-549 (571)
358 COG3391 Uncharacterized conser 96.9 0.26 5.7E-06 43.1 22.2 185 71-259 78-285 (381)
359 KOG1920 IkappaB kinase complex 96.9 0.2 4.4E-06 48.5 18.8 106 154-260 199-325 (1265)
360 KOG1008 Uncharacterized conser 96.9 0.00075 1.6E-08 60.0 2.9 188 71-258 61-276 (783)
361 KOG4640 Anaphase-promoting com 96.8 0.0086 1.9E-07 53.4 8.7 89 151-240 21-116 (665)
362 KOG1920 IkappaB kinase complex 96.8 0.14 2.9E-06 49.6 16.8 174 110-291 70-260 (1265)
363 PF12894 Apc4_WD40: Anaphase-p 96.7 0.006 1.3E-07 35.3 4.9 35 150-185 11-45 (47)
364 KOG4441 Proteins containing BT 96.6 0.25 5.5E-06 45.5 17.5 188 78-270 285-510 (571)
365 PHA03098 kelch-like protein; P 96.6 0.36 7.7E-06 44.4 18.7 200 73-278 290-530 (534)
366 PF14781 BBS2_N: Ciliary BBSom 96.6 0.15 3.3E-06 36.6 12.6 105 155-259 3-127 (136)
367 COG3386 Gluconolactonase [Carb 96.5 0.42 9E-06 40.3 19.9 193 3-206 52-272 (307)
368 PF04841 Vps16_N: Vps16, N-ter 96.5 0.57 1.2E-05 41.4 18.9 49 130-181 62-110 (410)
369 KOG3617 WD40 and TPR repeat-co 96.4 0.0058 1.3E-07 56.4 5.5 97 198-299 24-131 (1416)
370 PHA02713 hypothetical protein; 96.4 0.15 3.3E-06 46.9 14.4 148 73-223 347-538 (557)
371 KOG2444 WD40 repeat protein [G 96.2 0.012 2.6E-07 46.1 5.5 133 123-258 34-178 (238)
372 KOG2079 Vacuolar assembly/sort 96.2 0.18 3.9E-06 48.3 13.6 87 122-208 102-194 (1206)
373 PF00930 DPPIV_N: Dipeptidyl p 96.2 0.77 1.7E-05 39.7 22.0 83 85-170 21-120 (353)
374 KOG2395 Protein involved in va 96.1 0.19 4.2E-06 44.4 12.5 133 123-257 350-500 (644)
375 PF02897 Peptidase_S9_N: Proly 96.0 1 2.2E-05 39.9 26.2 185 71-257 128-357 (414)
376 KOG2444 WD40 repeat protein [G 96.0 0.028 6E-07 44.1 6.5 99 81-181 74-178 (238)
377 PHA03098 kelch-like protein; P 96.0 0.82 1.8E-05 42.0 17.3 149 76-227 341-520 (534)
378 PF12894 Apc4_WD40: Anaphase-p 95.9 0.034 7.4E-07 32.2 5.1 31 228-258 10-42 (47)
379 PF14583 Pectate_lyase22: Olig 95.8 1.1 2.3E-05 38.7 19.2 167 128-299 167-381 (386)
380 COG3386 Gluconolactonase [Carb 95.7 1.1 2.4E-05 37.7 19.4 199 25-239 36-264 (307)
381 COG3391 Uncharacterized conser 95.6 1.5 3.2E-05 38.4 24.8 213 71-290 35-270 (381)
382 PF08596 Lgl_C: Lethal giant l 95.5 0.62 1.3E-05 40.8 13.7 106 152-257 3-173 (395)
383 PF12234 Rav1p_C: RAVE protein 95.5 1 2.3E-05 41.6 15.4 93 199-291 39-147 (631)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 2 4.4E-05 39.3 24.7 75 210-288 441-519 (527)
385 PF06977 SdiA-regulated: SdiA- 95.5 1.1 2.5E-05 36.4 20.6 182 71-254 26-247 (248)
386 PF12234 Rav1p_C: RAVE protein 95.3 1.1 2.3E-05 41.5 15.0 93 123-217 45-155 (631)
387 COG5167 VID27 Protein involved 95.2 0.77 1.7E-05 40.7 12.8 134 160-297 477-628 (776)
388 PF05694 SBP56: 56kDa selenium 94.9 2.5 5.4E-05 37.1 22.3 213 77-291 86-392 (461)
389 PF14583 Pectate_lyase22: Olig 94.8 2.4 5.2E-05 36.7 19.5 174 112-288 39-253 (386)
390 KOG1897 Damage-specific DNA bi 94.6 4.5 9.8E-05 39.0 17.6 169 130-301 751-942 (1096)
391 PF05096 Glu_cyclase_2: Glutam 94.6 2.1 4.5E-05 35.0 24.3 179 111-291 47-249 (264)
392 KOG1897 Damage-specific DNA bi 94.4 5.1 0.00011 38.7 24.5 173 128-304 469-662 (1096)
393 PHA02790 Kelch-like protein; P 94.4 3.9 8.4E-05 37.1 16.9 143 75-223 316-475 (480)
394 PRK13616 lipoprotein LpqB; Pro 94.3 3.1 6.8E-05 38.6 15.4 136 149-289 348-513 (591)
395 PHA02790 Kelch-like protein; P 94.2 4.2 9E-05 36.9 17.6 178 76-259 270-472 (480)
396 PRK13616 lipoprotein LpqB; Pro 94.2 4.8 0.0001 37.5 18.1 142 110-257 351-525 (591)
397 COG3204 Uncharacterized protei 94.1 2.8 6.1E-05 34.6 18.0 114 146-259 81-212 (316)
398 KOG2079 Vacuolar assembly/sort 94.0 0.23 5E-06 47.6 7.5 96 81-179 103-202 (1206)
399 KOG4499 Ca2+-binding protein R 93.6 3 6.6E-05 33.3 13.1 127 111-240 111-264 (310)
400 PF10313 DUF2415: Uncharacteri 93.6 0.48 1E-05 26.7 5.5 31 151-181 1-34 (43)
401 KOG2280 Vacuolar assembly/sort 93.4 6.8 0.00015 36.7 18.7 192 84-284 61-271 (829)
402 KOG4499 Ca2+-binding protein R 93.4 2.6 5.6E-05 33.7 11.2 99 71-170 162-275 (310)
403 COG3823 Glutamine cyclotransfe 93.4 2.2 4.7E-05 33.5 10.5 153 88-245 69-247 (262)
404 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.1 7 0.00015 35.9 27.7 193 26-223 69-338 (527)
405 PF05694 SBP56: 56kDa selenium 92.6 6.9 0.00015 34.5 16.2 101 81-181 216-343 (461)
406 COG3490 Uncharacterized protei 92.4 4.8 0.0001 33.2 11.7 66 151-216 280-346 (366)
407 KOG1898 Splicing factor 3b, su 91.9 13 0.00027 36.5 15.4 129 130-259 854-1006(1205)
408 PF02897 Peptidase_S9_N: Proly 91.9 8.6 0.00019 34.0 24.8 177 111-291 126-343 (414)
409 PF10313 DUF2415: Uncharacteri 91.7 0.8 1.7E-05 25.8 4.7 29 230-258 1-34 (43)
410 TIGR03074 PQQ_membr_DH membran 91.5 4.5 9.8E-05 38.8 12.5 100 162-261 194-348 (764)
411 PF07569 Hira: TUP1-like enhan 91.4 2.1 4.6E-05 34.2 8.9 68 191-259 12-97 (219)
412 KOG1916 Nuclear protein, conta 91.4 0.26 5.7E-06 46.5 4.1 142 114-257 189-374 (1283)
413 KOG4460 Nuclear pore complex, 91.4 11 0.00023 34.1 14.4 26 152-177 105-130 (741)
414 PF15390 DUF4613: Domain of un 91.3 6.3 0.00014 35.9 12.3 142 151-302 20-187 (671)
415 KOG1900 Nuclear pore complex, 91.3 5.7 0.00012 39.6 12.9 147 111-258 81-273 (1311)
416 PF07569 Hira: TUP1-like enhan 91.1 2 4.3E-05 34.4 8.4 64 158-221 18-98 (219)
417 TIGR03074 PQQ_membr_DH membran 90.8 8.7 0.00019 37.0 13.6 104 119-223 194-349 (764)
418 COG1520 FOG: WD40-like repeat 90.6 11 0.00023 32.8 26.3 270 24-308 66-362 (370)
419 PF14655 RAB3GAP2_N: Rab3 GTPa 90.2 3.6 7.9E-05 36.2 9.9 43 147-189 304-346 (415)
420 KOG3630 Nuclear pore complex, 90.2 8.9 0.00019 37.8 12.8 134 71-206 105-260 (1405)
421 PF10168 Nup88: Nuclear pore c 90.2 7.4 0.00016 37.1 12.5 33 149-181 145-180 (717)
422 COG3204 Uncharacterized protei 89.9 10 0.00022 31.5 16.0 110 71-180 90-210 (316)
423 PF06977 SdiA-regulated: SdiA- 89.8 9.7 0.00021 31.1 19.2 148 109-258 22-202 (248)
424 PF10168 Nup88: Nuclear pore c 89.8 16 0.00035 34.9 14.4 32 228-259 145-181 (717)
425 COG3823 Glutamine cyclotransfe 89.8 8.5 0.00018 30.3 12.8 159 128-290 67-246 (262)
426 COG1520 FOG: WD40-like repeat 88.7 15 0.00033 31.9 19.2 142 117-260 66-220 (370)
427 PF11715 Nup160: Nucleoporin N 88.3 5.1 0.00011 37.0 10.1 38 152-189 216-257 (547)
428 TIGR02276 beta_rpt_yvtn 40-res 87.7 2.9 6.3E-05 22.9 5.3 14 209-222 13-26 (42)
429 PF14655 RAB3GAP2_N: Rab3 GTPa 87.6 19 0.00042 31.8 21.9 74 230-307 308-406 (415)
430 COG5167 VID27 Protein involved 87.5 12 0.00025 33.7 10.9 140 75-218 476-632 (776)
431 PF12768 Rax2: Cortical protei 86.8 17 0.00037 30.3 12.1 96 127-223 14-128 (281)
432 PF10647 Gmad1: Lipoprotein Lp 86.4 17 0.00036 29.8 17.2 140 152-291 25-184 (253)
433 PF14781 BBS2_N: Ciliary BBSom 86.2 11 0.00023 27.4 12.0 99 123-223 14-130 (136)
434 PF12657 TFIIIC_delta: Transcr 86.1 6.2 0.00014 30.1 7.9 32 151-182 86-123 (173)
435 PF08801 Nucleoporin_N: Nup133 85.3 27 0.00058 31.1 13.2 28 231-258 191-220 (422)
436 COG4590 ABC-type uncharacteriz 85.0 18 0.00039 32.1 10.7 149 111-260 223-389 (733)
437 KOG1898 Splicing factor 3b, su 84.9 42 0.00092 33.1 15.2 128 128-258 911-1049(1205)
438 PF14870 PSII_BNR: Photosynthe 84.9 22 0.00049 30.0 21.7 104 198-301 153-261 (302)
439 PF12341 DUF3639: Protein of u 84.8 3.4 7.3E-05 20.7 3.8 24 231-254 3-26 (27)
440 KOG2247 WD40 repeat-containing 84.3 0.28 6.1E-06 43.1 -0.2 140 115-258 41-189 (615)
441 KOG2280 Vacuolar assembly/sort 84.2 39 0.00084 32.1 14.5 77 59-135 75-154 (829)
442 KOG2377 Uncharacterized conser 83.4 23 0.0005 31.5 10.6 111 71-182 71-187 (657)
443 COG5276 Uncharacterized conser 83.3 26 0.00056 29.3 17.4 136 150-290 86-231 (370)
444 KOG2247 WD40 repeat-containing 83.3 0.13 2.8E-06 45.1 -2.6 133 153-292 37-179 (615)
445 smart00564 PQQ beta-propeller 83.2 3.5 7.5E-05 21.2 3.9 25 164-188 8-32 (33)
446 TIGR03118 PEPCTERM_chp_1 conse 82.0 30 0.00064 29.1 15.0 158 26-189 100-288 (336)
447 PF01011 PQQ: PQQ enzyme repea 81.7 5.1 0.00011 21.7 4.3 26 165-190 3-28 (38)
448 PF14761 HPS3_N: Hermansky-Pud 80.9 12 0.00025 29.7 7.4 58 231-291 19-78 (215)
449 TIGR03032 conserved hypothetic 80.8 33 0.00073 29.0 11.8 85 155-240 207-315 (335)
450 KOG2377 Uncharacterized conser 80.8 41 0.00089 30.0 15.0 137 123-259 37-187 (657)
451 KOG3630 Nuclear pore complex, 78.5 19 0.00042 35.7 9.3 90 198-291 109-217 (1405)
452 KOG1916 Nuclear protein, conta 77.7 2.8 6E-05 40.1 3.6 145 128-274 110-283 (1283)
453 PLN00033 photosystem II stabil 77.6 50 0.0011 29.2 16.8 138 153-295 241-393 (398)
454 PRK10115 protease 2; Provision 75.2 80 0.0017 30.3 23.5 104 111-217 129-254 (686)
455 PF14761 HPS3_N: Hermansky-Pud 74.1 42 0.00092 26.6 15.7 131 124-256 33-213 (215)
456 PF07676 PD40: WD40-like Beta 73.9 12 0.00026 20.1 5.4 29 149-177 7-38 (39)
457 PF15390 DUF4613: Domain of un 73.7 76 0.0017 29.4 14.6 137 111-247 59-221 (671)
458 TIGR03548 mutarot_permut cycli 73.5 56 0.0012 27.7 16.8 61 123-184 128-198 (323)
459 TIGR02276 beta_rpt_yvtn 40-res 73.1 13 0.00028 20.2 5.7 31 160-190 1-32 (42)
460 TIGR03118 PEPCTERM_chp_1 conse 73.1 56 0.0012 27.6 10.0 80 159-239 209-307 (336)
461 COG4257 Vgb Streptogramin lyas 73.0 53 0.0012 27.3 10.9 117 66-182 188-307 (353)
462 PF13570 PQQ_3: PQQ-like domai 72.1 14 0.0003 20.1 4.5 22 236-257 18-39 (40)
463 PF07995 GSDH: Glucose / Sorbo 71.6 64 0.0014 27.6 19.5 61 230-290 253-323 (331)
464 PF08728 CRT10: CRT10; InterP 71.3 98 0.0021 29.6 11.9 97 161-257 113-246 (717)
465 PRK10115 protease 2; Provision 71.1 1E+02 0.0022 29.6 29.3 185 71-258 131-345 (686)
466 KOG1900 Nuclear pore complex, 68.9 82 0.0018 32.1 11.1 71 111-181 181-273 (1311)
467 COG5290 IkappaB kinase complex 68.4 28 0.0006 33.3 7.6 91 71-162 251-348 (1243)
468 PLN02193 nitrile-specifier pro 68.4 93 0.002 28.2 21.9 137 123-260 233-413 (470)
469 PLN02153 epithiospecifier prot 67.9 78 0.0017 27.1 21.6 136 123-259 90-286 (341)
470 TIGR02604 Piru_Ver_Nterm putat 67.5 84 0.0018 27.3 15.6 134 151-291 14-202 (367)
471 PRK13684 Ycf48-like protein; P 66.7 83 0.0018 27.0 20.5 145 150-298 172-328 (334)
472 PF03088 Str_synth: Strictosid 64.8 23 0.0005 23.7 4.9 32 209-240 36-67 (89)
473 PF03088 Str_synth: Strictosid 64.4 28 0.0006 23.3 5.2 42 125-168 33-74 (89)
474 PF14779 BBS1: Ciliary BBSome 64.0 60 0.0013 26.6 8.0 67 149-215 175-255 (257)
475 PLN02153 epithiospecifier prot 63.5 96 0.0021 26.6 20.1 52 172-223 217-289 (341)
476 PF12657 TFIIIC_delta: Transcr 63.0 66 0.0014 24.5 8.2 29 230-258 86-122 (173)
477 PF02333 Phytase: Phytase; In 61.9 1.1E+02 0.0024 26.8 17.0 138 160-299 66-235 (381)
478 PF11715 Nup160: Nucleoporin N 59.6 18 0.0004 33.4 5.1 29 231-259 216-250 (547)
479 KOG3616 Selective LIM binding 59.4 27 0.0006 33.1 5.9 67 150-216 14-81 (1636)
480 PRK13684 Ycf48-like protein; P 56.4 1.3E+02 0.0028 25.8 18.0 143 111-256 175-330 (334)
481 PF14727 PHTB1_N: PTHB1 N-term 55.7 1.5E+02 0.0033 26.4 23.8 235 16-255 27-316 (418)
482 PF14779 BBS1: Ciliary BBSome 53.6 92 0.002 25.6 7.4 67 229-299 176-256 (257)
483 TIGR03548 mutarot_permut cycli 53.5 1.4E+02 0.003 25.3 17.7 88 161-248 123-233 (323)
484 PF01436 NHL: NHL repeat; Int 53.3 28 0.00061 17.2 4.1 23 154-176 5-27 (28)
485 KOG3522 Predicted guanine nucl 52.7 2.3E+02 0.005 27.6 11.2 79 121-201 637-718 (925)
486 PF14269 Arylsulfotran_2: Aryl 51.7 1.5E+02 0.0032 25.1 13.2 59 198-256 152-219 (299)
487 PF14870 PSII_BNR: Photosynthe 51.5 1.5E+02 0.0033 25.1 21.5 142 147-290 141-293 (302)
488 PF09826 Beta_propel: Beta pro 51.3 1.8E+02 0.0039 26.9 9.8 48 160-208 20-71 (521)
489 PRK14131 N-acetylneuraminic ac 50.3 1.7E+02 0.0038 25.5 19.0 11 129-139 189-199 (376)
490 PF02333 Phytase: Phytase; In 49.4 1.8E+02 0.004 25.5 20.9 188 71-259 58-292 (381)
491 KOG1520 Predicted alkaloid syn 49.3 1.8E+02 0.0039 25.4 9.6 44 124-169 194-237 (376)
492 PF12768 Rax2: Cortical protei 49.2 1.6E+02 0.0034 24.7 9.8 49 211-259 17-74 (281)
493 KOG0783 Uncharacterized conser 48.7 2.8E+02 0.006 27.3 13.4 51 201-251 399-452 (1267)
494 TIGR02604 Piru_Ver_Nterm putat 47.9 1.9E+02 0.0041 25.2 14.3 98 71-169 18-142 (367)
495 PF10395 Utp8: Utp8 family; I 46.8 2.7E+02 0.0058 26.6 15.0 147 71-218 134-305 (670)
496 KOG2063 Vacuolar assembly/sort 45.9 3.1E+02 0.0068 27.2 18.7 71 194-270 205-277 (877)
497 PLN00033 photosystem II stabil 44.9 2.2E+02 0.0049 25.2 16.3 102 150-254 280-396 (398)
498 PF08728 CRT10: CRT10; InterP 44.3 3E+02 0.0066 26.5 10.2 110 27-136 115-245 (717)
499 TIGR03547 muta_rot_YjhT mutatr 43.6 2.1E+02 0.0045 24.5 16.1 176 25-208 63-329 (346)
500 KOG3616 Selective LIM binding 43.5 74 0.0016 30.5 6.0 31 229-259 14-46 (1636)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-42 Score=276.27 Aligned_cols=256 Identities=19% Similarity=0.254 Sum_probs=220.7
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
.+..+||||.|.|+|+||..+. .|. ....||..+ +++|+|||+. |+|+.||+|++||.+++++..
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~Te-----------Tp~-~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTE-----------TPL-FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG 193 (480)
T ss_pred CCceEEecCCCceEEeeccCCC-----------Ccc-eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc
Confidence 4778999999999999998876 343 346799999 9999999999 999999999999999999999
Q ss_pred cccceeeeeeeeeeeecCC------ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEE
Q 021744 102 INNRAVIKTDILCRNWVQG------NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVR 175 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~------~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~ 175 (308)
..+.+|++.+..++|-|-. ..++++.||.|+|||+..+ +.+..+.+|+.+|+|+.|-.+ .+++++|.|++|+
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIk 271 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIK 271 (480)
T ss_pred ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEEEeccCccceEEEEEcCC-ceEEecCCCceEE
Confidence 9999999999999987643 3388999999999999998 889999999999999999754 4899999999999
Q ss_pred EEeCCCCeEEEEEe------------------------------------------------------------------
Q 021744 176 VWDCASGQCAGVIN------------------------------------------------------------------ 189 (308)
Q Consensus 176 ~wd~~~~~~~~~~~------------------------------------------------------------------ 189 (308)
+|+...|.+...++
T Consensus 272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 99887755443321
Q ss_pred --------------CCCeeEE--EEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCC
Q 021744 190 --------------LGGEVGC--MISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDG 249 (308)
Q Consensus 190 --------------~~~~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg 249 (308)
|...+.. ++||++++++++ |+.|++||.++++.+ ++.+|-..|+.++|+.| +|++|+.|.
T Consensus 352 ~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs 431 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS 431 (480)
T ss_pred cccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCc
Confidence 1111222 257899999887 999999999999988 89999999999999999 999999999
Q ss_pred eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744 250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG 298 (308)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~ 298 (308)
++++|+++++ ++...+.+|...|.+ .|+|||+.+++++ +..+.++
T Consensus 432 TLKvw~V~tk----Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 432 TLKVWDVRTK----KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred eEEEEEeeee----eecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 9999999997 778899999999999 9999999998776 4444443
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=275.84 Aligned_cols=255 Identities=16% Similarity=0.205 Sum_probs=227.8
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCC-C-e-eeccCCCcEEEEECCCCCCc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNT-W-G-RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g-~-~-~s~~~d~~i~vwd~~~~~~~ 100 (308)
+..|||||-+|.++||+...+ +....+.||... ++.|+|.. . . |||+.||++++|++++..++
T Consensus 187 s~~laT~swsG~~kvW~~~~~------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l 254 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQC------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL 254 (459)
T ss_pred CCeEEEeecCCceeEeecCCc------------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence 678999999999999999988 556678899988 89999983 4 4 99999999999999765444
Q ss_pred ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
..+.+|...|..++|.|+|.+ .+++.|.+-++||+.++ +.+...+||...|.+++|+|||.+++||+.|..-+|||+
T Consensus 255 -~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 255 -QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred -hhhhcchhhheeeeecCCCceeeecccccchhhcccccc-hhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 356778888999999999988 99999999999999999 566677899999999999999999999999999999999
Q ss_pred CCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeE
Q 021744 180 ASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAI 251 (308)
Q Consensus 180 ~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i 251 (308)
+++.++..+. |-.+|..+ +|+|..|++|+ |++++|||++..... ++.+|.+-|+.+.|+|. +|++++.|+++
T Consensus 333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcce
Confidence 9999999998 77777766 58899999887 999999999988877 89999999999999996 99999999999
Q ss_pred EEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744 252 LAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG 298 (308)
Q Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~ 298 (308)
+||..++. ++++++.+|.+.|.+ .+++|+.++++++ +.++-+|
T Consensus 413 kiWs~~~~----~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 413 KIWSTRTW----SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eeecCCCc----ccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 99999986 999999999999999 9999999999776 5444443
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-39 Score=256.20 Aligned_cols=243 Identities=19% Similarity=0.303 Sum_probs=214.2
Q ss_pred CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744 62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG 137 (308)
Q Consensus 62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~ 137 (308)
....||.++ +++|+|+|.. |+|+.|.|+|+||+.+..+. ...++|..-|.+++++|+|.. ++|+.||.|++||.+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-eeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 455699999 9999999999 99999999999999876554 245678888999999999976 999999999999999
Q ss_pred CCceeeeEeeCcccceEEEEEeC-----CCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEEcC-CCEEEEEc-C
Q 021744 138 DGFKLLTQLEGHQKVVSGITLPS-----GSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISE-GPWIFIGV-T 209 (308)
Q Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~~-~~~l~~~~-d 209 (308)
++.+..+.|.+|+..|++++|.| ..++|++++.||+|+|||+..++++..+. |..+++|+... ..+|++|+ |
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~D 267 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQD 267 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCC
Confidence 99788899999999999999965 56789999999999999999999999888 88999999554 66888888 9
Q ss_pred CcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--------------------------------------EEEEEcCCCe
Q 021744 210 NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--------------------------------------LLFAGTQDGA 250 (308)
Q Consensus 210 ~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--------------------------------------~l~~g~~dg~ 250 (308)
++|++|+...+.+. .+++|...|+.++.+.+ .|++|++|.+
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 99999999998877 89999999999998821 4999999999
Q ss_pred EEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee---ceEEEEeecCceeEEeC
Q 021744 251 ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFIGQNNKGVVCYR 308 (308)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~~~~~~~~ 308 (308)
+.+|+-...+ +++..+.+|...|+. .||||+++++++. ++.+|.....+-+..||
T Consensus 348 lflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 348 LFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred EEEecccccc---cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh
Confidence 9999976542 788999999999999 9999999999665 78888888888777776
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=235.91 Aligned_cols=255 Identities=15% Similarity=0.231 Sum_probs=219.1
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC----
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK---- 98 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~---- 98 (308)
...|+|+|.||.+.|||..+.|+. ...|++ ..+ ..+|+|.|+. |.|+-|+...||++.+.+
T Consensus 67 sr~ivSaSqDGklIvWDs~TtnK~----------haipl~--s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFTTNKV----------HAIPLP--SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred cCeEEeeccCCeEEEEEcccccce----------eEEecC--ceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc
Confidence 578999999999999998887442 111211 223 7899999999 999999999999997552
Q ss_pred -CcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEE
Q 021744 99 -NSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRV 176 (308)
Q Consensus 99 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~ 176 (308)
+......+|...+.+|.|.+++.+++++.|.+..+||++++ +.+..|.+|.+.|.+++++| +++.+++|+-|++.++
T Consensus 135 ~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~akl 213 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKL 213 (343)
T ss_pred ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCeEEecccccceee
Confidence 33345678888899999999999999999999999999999 89999999999999999999 8999999999999999
Q ss_pred EeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCC---CCCEEEEEEeCC--EEEEEcC
Q 021744 177 WDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGP---VGQVYAMAVGND--LLFAGTQ 247 (308)
Q Consensus 177 wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~---~~~v~~~~~~~~--~l~~g~~ 247 (308)
||++.+.++++|. |+..+.++ +|+|.-+++|+ |++.++||++..+.+....| ..+|++++||.. +|++|..
T Consensus 214 WD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 214 WDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred eeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence 9999999999999 88888766 69999999998 88999999999888744434 358999999988 8888999
Q ss_pred CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744 248 DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFI 297 (308)
Q Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~ 297 (308)
|..+.+||.-.+ +.+..+.+|.+.|++ ..+|||.-++++. +..+-+
T Consensus 294 d~~c~vWDtlk~----e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 294 DFTCNVWDTLKG----ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred CCceeEeecccc----ceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 999999999887 778899999999999 9999998777554 444443
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=229.48 Aligned_cols=269 Identities=14% Similarity=0.220 Sum_probs=219.0
Q ss_pred CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCC-c
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKN-S 100 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~ 100 (308)
.+..-+|||+|.|.+||+|.+.++ .|. +..+.+ .+|.+ .+.++|+++. |+|+.- .||+||++++.+ .
T Consensus 7 ~d~~viLvsA~YDhTIRfWqa~tG---~C~---rTiqh~---dsqVN-rLeiTpdk~~LAaa~~q-hvRlyD~~S~np~P 75 (311)
T KOG0315|consen 7 TDDPVILVSAGYDHTIRFWQALTG---ICS---RTIQHP---DSQVN-RLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNP 75 (311)
T ss_pred CCCceEEEeccCcceeeeeehhcC---eEE---EEEecC---cccee-eEEEcCCcchhhhccCC-eeEEEEccCCCCCc
Confidence 345678999999999999999887 221 111111 11211 5899999999 666654 599999988766 4
Q ss_pred ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
.....+|.+.|..+.|..+|.- ++|++||+++|||++.. ...+.++ |..+|+++..+|+...|++|..+|.|++||+
T Consensus 76 v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDL 153 (311)
T ss_pred eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc-ccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence 4556778888999999999987 99999999999999987 5555555 8899999999999999999999999999999
Q ss_pred CCCeEEEEEe--CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc------ee-eeeCCCCCEEEEEEeCC--EEEEE
Q 021744 180 ASGQCAGVIN--LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT------DL-SLSGPVGQVYAMAVGND--LLFAG 245 (308)
Q Consensus 180 ~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~------~~-~~~~~~~~v~~~~~~~~--~l~~g 245 (308)
.+..+...+. ....+.++ .++|..++++. .|..++|++-+.+ ++ .++.|...+..+.+||+ +||++
T Consensus 154 ~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 154 GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 9987777665 33445554 58999999876 7899999987653 22 67899999999999999 99999
Q ss_pred cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee---ceEEEEeecCceeEEe
Q 021744 246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFIGQNNKGVVCY 307 (308)
Q Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~~~~~~~ 307 (308)
+.|.+++||+.++. ++....+.+|+.++.. +||.||+||++++ ...+|-+.+++.+.-|
T Consensus 234 ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred cCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence 99999999999985 3666778899999999 9999999999666 5778888899888765
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-36 Score=232.35 Aligned_cols=261 Identities=14% Similarity=0.161 Sum_probs=205.6
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
+...+++++.|+++.+|+....+. ++ -.....+.||+-. .+..++||++ +++++|+++|+||+++++..
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~---~~----G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t- 98 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDI---KY----GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGEST- 98 (315)
T ss_pred CCceEEEcccceEEEEEEeccCcc---cc----CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEE-
Confidence 456899999999999999776411 00 0112234577666 8999999999 99999999999999988543
Q ss_pred cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee--CcccceEEEEEeCC--CCEEEEeeCCCcEEE
Q 021744 102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE--GHQKVVSGITLPSG--SDKLYSGSKDETVRV 176 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~~~~--~~~l~s~s~dg~v~~ 176 (308)
....+|...+.+++|+++++. ++|+.|.+|++|++.... ..++. +|++.|.|+.|+|+ ..++++++.|++|++
T Consensus 99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv 176 (315)
T KOG0279|consen 99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV 176 (315)
T ss_pred EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE
Confidence 456788888999999999966 999999999999998762 33333 23889999999997 678999999999999
Q ss_pred EeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeE
Q 021744 177 WDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAI 251 (308)
Q Consensus 177 wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i 251 (308)
||+++-+....+. |.+.++.+ +|||.++++|. ||.+.+||++.++......|...|.+++|+|+ +.++...+-.|
T Consensus 177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sI 256 (315)
T KOG0279|consen 177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSI 256 (315)
T ss_pred EccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCce
Confidence 9999988888777 66666544 79999999887 99999999999999877788999999999999 55555556679
Q ss_pred EEEEcCCCCcccccceecc----cc----CCCe-EE-EEecCCCeEEEee-ceEEEEee
Q 021744 252 LAWKFNVTTNCFEPAASLK----VH----TDSN-RA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 252 ~iwd~~~~~~~~~~~~~~~----~~----~~~v-~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
+|||+.++ ..+.++. +. ..+. .+ +|++||+.|++.. +..|-+++
T Consensus 257 kIwdl~~~----~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 257 KIWDLESK----AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEEeccch----hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 99999997 4444443 22 1222 33 9999999888665 55555544
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-37 Score=252.42 Aligned_cols=217 Identities=20% Similarity=0.266 Sum_probs=193.4
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
.+.-+||++.||++++|+.+.. .|+ ..+.||... .++|+|+|++ +|++.|.+-|+||+++++.+.
T Consensus 230 ~~~~lat~s~Dgtvklw~~~~e-----------~~l-~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 230 SDLNLATASADGTVKLWKLSQE-----------TPL-QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred CccceeeeccCCceeeeccCCC-----------cch-hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 3557999999999999998875 233 346678766 8999999999 999999999999998876542
Q ss_pred cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744 102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~ 180 (308)
.+.+|...+..++|.++|.. ++|+.|..-+|||++++ ..+..|.+|.++|.+++|+|+|-.|+|||.|++++|||++
T Consensus 298 -~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 298 -LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred -hhcccccccceeEecCCCceeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 56789999999999999988 89999999999999999 7889999999999999999999999999999999999999
Q ss_pred CCeEEEEEe-CCCeeEEE--Ec-CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744 181 SGQCAGVIN-LGGEVGCM--IS-EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAIL 252 (308)
Q Consensus 181 ~~~~~~~~~-~~~~v~~~--~~-~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~ 252 (308)
..+.+.++. |...|+.+ .| .|.+|++++ |+++++|..++.+++ .+.+|++.|.+++++++ .+++++.|++++
T Consensus 376 ~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 376 MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence 988888887 66666655 34 578888776 999999999999988 89999999999999999 899999999999
Q ss_pred EEE
Q 021744 253 AWK 255 (308)
Q Consensus 253 iwd 255 (308)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-36 Score=237.79 Aligned_cols=248 Identities=15% Similarity=0.206 Sum_probs=220.1
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
.+.++++.|.+|++||..++ ..-..++||+.+ .|+|+..|++ |+++.|-.+++||.++-..-...
T Consensus 121 ~~v~~as~d~tikv~D~~tg------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks 188 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTETG------------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS 188 (406)
T ss_pred eEEEEecCCceEEEEEccch------------hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH
Confidence 46788999999999999988 235668899999 8999999999 99999999999999764333335
Q ss_pred cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744 104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~ 182 (308)
..+|+..+.++.|.|.|.. ++++.|.+|+.|++.++ ..+.++.+|...|..++.+.||..+++++.|.+|++|-+.++
T Consensus 189 ~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 189 LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK 267 (406)
T ss_pred hcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence 6778888999999999976 89999999999999999 899999999999999999999999999999999999999999
Q ss_pred eEEEEEe-CCCeeEEEE--c---------------CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--
Q 021744 183 QCAGVIN-LGGEVGCMI--S---------------EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-- 240 (308)
Q Consensus 183 ~~~~~~~-~~~~v~~~~--~---------------~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-- 240 (308)
++...+. |+.++.|+. | .++++.+++ |++|++||+.++.++ ++.+|.+.|..++|+|.
T Consensus 268 ~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 268 QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK 347 (406)
T ss_pred hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe
Confidence 8887777 666666651 1 135788888 999999999999988 99999999999999998
Q ss_pred EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 241 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
+|+++.+|+++++||+.+. ++.+.+..|...+++ .|..+..++++++
T Consensus 348 yi~ScaDDktlrvwdl~~~----~cmk~~~ah~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 348 YILSCADDKTLRVWDLKNL----QCMKTLEAHEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred EEEEEecCCcEEEEEeccc----eeeeccCCCcceeEEEecCCCCceEEecc
Confidence 9999999999999999997 889999999999999 9999888777554
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-34 Score=220.35 Aligned_cols=239 Identities=20% Similarity=0.241 Sum_probs=198.2
Q ss_pred CCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCc----ccccceeeeeeeeeeeecCCce-EEeeCCC
Q 021744 59 PLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS----NINNRAVIKTDILCRNWVQGNC-MYGEKCK 129 (308)
Q Consensus 59 ~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~ 129 (308)
.+...+.+|.+. .++..+.+.. ++++.|+++.+|++...+.. .....+|+..+..+..++++++ ++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 344567899999 7888888555 99999999999999654321 2244678888999999999988 8999999
Q ss_pred eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-C--CCeeEEE--EcC--CC
Q 021744 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-L--GGEVGCM--ISE--GP 202 (308)
Q Consensus 130 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~--~~~v~~~--~~~--~~ 202 (308)
++++||+.++ +..+.|.+|...|.+++|++|.++++||+.|+++++||.. +++..++. . ..-+.|+ +|+ +.
T Consensus 86 ~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999999 8999999999999999999999999999999999999988 45555555 2 5567777 355 55
Q ss_pred EEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE
Q 021744 203 WIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA 278 (308)
Q Consensus 203 ~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 278 (308)
+|++++ |++|++||+++.+.. .+.+|...++.+++||| ++++|+.||.+.+||++.+ +.+..+ .|...|.+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~----k~lysl-~a~~~v~s 238 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG----KNLYSL-EAFDIVNS 238 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC----ceeEec-cCCCeEee
Confidence 777666 999999999999988 78999999999999999 8999999999999999997 555655 46788888
Q ss_pred -EEecCCCeEEEee--ceEEEEeecCcee
Q 021744 279 -HFSRDVTSLLGSV--SFIMFIGQNNKGV 304 (308)
Q Consensus 279 -~~s~d~~~l~~s~--s~~i~~~~~~~~~ 304 (308)
+|+|+.-+|.+.. ++.||-......+
T Consensus 239 l~fspnrywL~~at~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATATSIKIWDLESKAVV 267 (315)
T ss_pred EEecCCceeEeeccCCceEEEeccchhhh
Confidence 9999987777544 7777766544433
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-34 Score=249.04 Aligned_cols=238 Identities=14% Similarity=0.238 Sum_probs=204.8
Q ss_pred CCCCCCCCceEEecCCCeEEEeecCCCCCCCCC------cc-------------cccCCCCCCccccccc--eeEEecCC
Q 021744 20 GGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCP------YL-------------HRELPLPPAATANGAA--AKRFANNT 78 (308)
Q Consensus 20 ~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~------~~-------------~~~~~~~~~~~gh~~~--~i~~s~~g 78 (308)
...++.++++|.|-.|..|++|........+.+ -+ ..+......+.||+++ ...|+|+.
T Consensus 384 a~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~ 463 (707)
T KOG0263|consen 384 AEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR 463 (707)
T ss_pred EeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc
Confidence 345777889999999999999987632100000 00 0011112346699999 89999999
Q ss_pred Ce-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEE
Q 021744 79 WG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGI 156 (308)
Q Consensus 79 ~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~ 156 (308)
++ +++|.|+++|+|.+.+...+. ...+|..++..+.|+|-|.+ ++++.|++.++|..... ++++.+.+|-+.|.|+
T Consensus 464 rfLlScSED~svRLWsl~t~s~~V-~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv 541 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDTWSCLV-IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCV 541 (707)
T ss_pred cceeeccCCcceeeeecccceeEE-EecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-CchhhhcccccccceE
Confidence 99 999999999999998765543 44588889999999999977 99999999999999987 8999999999999999
Q ss_pred EEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC
Q 021744 157 TLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ 231 (308)
Q Consensus 157 ~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~ 231 (308)
.|+|+..++++||.|.+|++||+.+|..++.|. |..++.++ +|+|++|++|+ |+.|++||+.++..+ .+.+|.+.
T Consensus 542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t 621 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT 621 (707)
T ss_pred EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc
Confidence 999999999999999999999999999999998 88888877 68999999988 999999999999888 89999999
Q ss_pred EEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744 232 VYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 232 v~~~~~~~~--~l~~g~~dg~i~iwd~~~~ 259 (308)
|.++.|+.+ .||+|+.|..|++||+...
T Consensus 622 i~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 622 IYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999 9999999999999998764
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=228.84 Aligned_cols=256 Identities=16% Similarity=0.232 Sum_probs=209.9
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
...+++|..|++|++||...- .....+.||++..++...+... ++|++|.||+|||+++++++. ..
T Consensus 207 D~kiVSGlrDnTikiWD~n~~------------~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~-tl 273 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNSL------------ECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLN-TL 273 (499)
T ss_pred chhhhcccccCceEEeccccH------------HHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhh-HH
Confidence 457999999999999997764 3345678999996666667778 999999999999999998874 33
Q ss_pred ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744 105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~ 182 (308)
..|...+.-+.|+ .|..++.+.|..|.+||+.... .+.+.+.||...|..+.|+ .++++++|.|.+|++|++.+.
T Consensus 274 ihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 274 IHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred hhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence 4555566666665 4566999999999999998652 4466788999999999997 459999999999999999999
Q ss_pred eEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCC
Q 021744 183 QCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 183 ~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 259 (308)
++++++. |..-+.|+--.++++++|+ |.+|++||+..|.++ .+.+|+.-|.++.|....+++|..||+|++||+...
T Consensus 351 efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 351 EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred eeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccc
Confidence 9999998 7778889989999999987 999999999999998 789999999999999889999999999999999875
Q ss_pred Ccc-----cccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 260 TNC-----FEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 260 ~~~-----~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
..- .-++.++..|.+.|.- .| |...++++. +..|.+|.
T Consensus 431 ldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 431 LDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred cCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 320 0134556678888877 77 445566544 66666654
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.7e-33 Score=220.86 Aligned_cols=261 Identities=14% Similarity=0.233 Sum_probs=219.5
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
+..++||+.|+++++||..++ .+...+.||-.. .+++|+.-.| ++++.|+.|+.||++..+.+.
T Consensus 163 n~wf~tgs~DrtikIwDlatg------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR- 229 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATG------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR- 229 (460)
T ss_pred ceeEEecCCCceeEEEEcccC------------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHH-
Confidence 678999999999999999998 455567788777 8999999999 999999999999998776653
Q ss_pred ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
...+|-..|.++...|.-.. ++|+.|.++++||+++. ..+..+.||+.+|..+.+.|-...+++||.|++|++||++.
T Consensus 230 ~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a 308 (460)
T KOG0285|consen 230 HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA 308 (460)
T ss_pred HhccccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc
Confidence 45677788999999988755 99999999999999999 78999999999999999999888999999999999999999
Q ss_pred CeEEEEEe-CCCeeEEEE--cCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEc
Q 021744 182 GQCAGVIN-LGGEVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKF 256 (308)
Q Consensus 182 ~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~ 256 (308)
++...++. |...+.+++ |....+++++...|+.|++..++.. .+.+|...+++++...| ++++|+++|.+.+||.
T Consensus 309 gkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 309 GKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDW 388 (460)
T ss_pred CceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEec
Confidence 99888887 667777774 5566677777889999999998877 78999999999999999 9999999999999999
Q ss_pred CCCCcccccceecc-----ccCCCeEE-EEecCCCeEEEee-ceEEEEeecC
Q 021744 257 NVTTNCFEPAASLK-----VHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNN 301 (308)
Q Consensus 257 ~~~~~~~~~~~~~~-----~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~ 301 (308)
+++.. ++..+++. ..+..|.+ +|...|..|+++. +..|-++..+
T Consensus 389 ksg~n-yQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 389 KSGHN-YQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CcCcc-cccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 98754 33333222 12345677 9999998888665 5555555443
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-32 Score=239.09 Aligned_cols=264 Identities=16% Similarity=0.284 Sum_probs=215.5
Q ss_pred CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~ 99 (308)
+-.+..+++++.|+.+++|+...... .....+.+|... .++|+|++.+ ++++.|++|||||+.....
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~~----------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIKS----------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecccccc----------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 44466799999999999999865510 122223677666 8999999999 9999999999999944433
Q ss_pred cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744 100 SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (308)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd 178 (308)
......+|...+.+++|+|.++. ++|+.|++|+|||++++ +++..+.+|.+.|++++|++++++|++++.|+.|++||
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 33456689999999999999955 99999999999999998 89999999999999999999999999999999999999
Q ss_pred CCCCe--EEEEEe-CCC--eeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCE---EEEEEeCC--EEEE
Q 021744 179 CASGQ--CAGVIN-LGG--EVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQV---YAMAVGND--LLFA 244 (308)
Q Consensus 179 ~~~~~--~~~~~~-~~~--~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v---~~~~~~~~--~l~~ 244 (308)
+.+++ ++..+. ... ++.++ ++++++++++. |+.+++||++.+... .+.+|...+ .+...++. ++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred CCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEE
Confidence 99999 456665 222 34544 48899999887 789999999988777 777777643 33344555 9999
Q ss_pred EcCCCeEEEEEcCCCCcccccceecccc-CCCeEE-EEecCCCeEEEee---ceEEEEeecC
Q 021744 245 GTQDGAILAWKFNVTTNCFEPAASLKVH-TDSNRA-HFSRDVTSLLGSV---SFIMFIGQNN 301 (308)
Q Consensus 245 g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~ 301 (308)
|+.|+.|++||+.++ ..+..+.+| ...+.. +++|...+++... +..+.+|..+
T Consensus 397 g~~d~~v~~~~~~s~----~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSG----GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EeCCceEEEEeCCcc----chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999986 788889999 777777 9999998888554 6667766654
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=226.78 Aligned_cols=248 Identities=17% Similarity=0.244 Sum_probs=210.4
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
|+.|++|+..|...+|+...++ .-..++.|..+ ++.++++|.. +||+.+|.|++|+.+-. .+..
T Consensus 108 GRRLltgs~SGEFtLWNg~~fn------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~ 174 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGTSFN------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKI 174 (464)
T ss_pred CceeEeecccccEEEecCceee------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHH
Confidence 5679999999999999987651 22335567767 8999999999 99999999999998533 2223
Q ss_pred ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
....|...|+.++|+|.... ++++.||+|+|||.... +..+.+.||.-.|.+++|+|...+++++|.|..|++||.++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 33444467999999997754 99999999999999877 66778899999999999999999999999999999999999
Q ss_pred CeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEE
Q 021744 182 GQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILA 253 (308)
Q Consensus 182 ~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~i 253 (308)
++++.++. |...|..+ .+++.+|++++ |..++++|+++.+.+ .+.+|+..++++.|+|- +|.+|+.||.|..
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 99999988 77777766 47789999887 999999999976655 89999999999999986 9999999999999
Q ss_pred EEcCCCCcccccceecc-ccCCCeEE-EEecCCCeEEEee
Q 021744 254 WKFNVTTNCFEPAASLK-VHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 254 wd~~~~~~~~~~~~~~~-~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
|.+... +++..+. +|...|++ +|.|=|-.|+++.
T Consensus 334 ~~v~~~----~p~~~i~~AHd~~iwsl~~hPlGhil~tgs 369 (464)
T KOG0284|consen 334 WVVGLE----EPLGEIPPAHDGEIWSLAYHPLGHILATGS 369 (464)
T ss_pred Eecccc----ccccCCCcccccceeeeeccccceeEeecC
Confidence 999954 5666655 79999999 9999997777544
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-31 Score=207.29 Aligned_cols=235 Identities=14% Similarity=0.202 Sum_probs=196.7
Q ss_pred CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccce-eeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744 62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRA-VIKTDILCRNWVQGNC-MYGEKCKFLHSWTV 136 (308)
Q Consensus 62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~ 136 (308)
..++||.+. ++.|++|.++ ++++.||.+.|||.-+.... .... ...-|..|+|+|.+.. +.|+-|+...||++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~--haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV--HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce--eEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 567899888 9999999999 99999999999998554322 1112 2223899999999988 78999999999999
Q ss_pred CCC--c---eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--Ec-CCCEEEEE
Q 021744 137 GDG--F---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--IS-EGPWIFIG 207 (308)
Q Consensus 137 ~~~--~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~-~~~~l~~~ 207 (308)
.+. . +..+++.+|++-+.++.|-+ ..+|+|+|.|.+..+||+++++.+..|. |.+.+.++ .| +++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 854 1 45678999999999999987 5679999999999999999999999998 88888877 35 68888887
Q ss_pred c-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc--ccCCCeEE-EE
Q 021744 208 V-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK--VHTDSNRA-HF 280 (308)
Q Consensus 208 ~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~-~~ 280 (308)
+ |+..++||++.+.+. .+.+|+..|+++.|.|+ -|++|++|+++++||++.. +.+..+. .-..+|++ +|
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD----~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD----QELAVYSHDSIICGITSVAF 281 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC----cEEeeeccCcccCCceeEEE
Confidence 7 999999999999887 89999999999999999 8999999999999999986 4455554 23457788 99
Q ss_pred ecCCCeEEEee-ceEEEEeecCce
Q 021744 281 SRDVTSLLGSV-SFIMFIGQNNKG 303 (308)
Q Consensus 281 s~d~~~l~~s~-s~~i~~~~~~~~ 303 (308)
|..|++|+++. +....+|..-|+
T Consensus 282 S~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred cccccEEEeeecCCceeEeecccc
Confidence 99999999766 666666665443
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=219.47 Aligned_cols=241 Identities=17% Similarity=0.192 Sum_probs=212.9
Q ss_pred CCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEE
Q 021744 60 LPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWT 135 (308)
Q Consensus 60 ~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd 135 (308)
+...+.||..+ .+.|+|+-.. ++++.|.+|++||..+++. ...+++|...+..+.|...|.. ++++.|-.+++||
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-hhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 33445577766 7889999999 9999999999999999988 5678999999999999999977 8888999999999
Q ss_pred cCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCc
Q 021744 136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNF 211 (308)
Q Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~ 211 (308)
..+-.++++.+.+|+..|.+++|-|.+.+++|++.|.+|+.|++.++.+++++. +..-+..+ ..||.++++++ |.+
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 988667888999999999999999999999999999999999999999999999 55656655 35788888887 889
Q ss_pred EEEEEcCCCcee-eeeCCCCCEEEEEEeCC-----------------EEEEEcCCCeEEEEEcCCCCcccccceeccccC
Q 021744 212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND-----------------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273 (308)
Q Consensus 212 i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-----------------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 273 (308)
+++|-+.++++. .+..|+-+|.+++|-|. ++.+++.|++|++||+.++ .++.++.+|.
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghd 334 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHD 334 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC----eEEEEEeccc
Confidence 999999999887 78899999999999661 7889999999999999998 8999999999
Q ss_pred CCeEE-EEecCCCeEEEee---ceEEEEeecCceeE
Q 021744 274 DSNRA-HFSRDVTSLLGSV---SFIMFIGQNNKGVV 305 (308)
Q Consensus 274 ~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~~~~~ 305 (308)
++|+. +|+|.|+||++.+ ++.+|-.+|...+.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 99999 9999999999887 67777777766553
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-32 Score=238.45 Aligned_cols=223 Identities=18% Similarity=0.253 Sum_probs=199.6
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCC------------------------------CcccccceeeeeeeeeeeecC
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSK------------------------------NSNINNRAVIKTDILCRNWVQ 119 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 119 (308)
|..|++|++. |.|..|..|++|.+.+.+ .......+|.++|..+.|+|+
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd 462 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD 462 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence 8899999999 999999999999997421 011124678888999999999
Q ss_pred Cce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE
Q 021744 120 GNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM 197 (308)
Q Consensus 120 ~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~ 197 (308)
.++ +++++|+++|+|.+.+. ..+-.++||..+|+.+.|+|.|-++||+|.|++.++|.....++++.+. |-..+.|+
T Consensus 463 ~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv 541 (707)
T KOG0263|consen 463 RRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCV 541 (707)
T ss_pred ccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceE
Confidence 987 89999999999999998 7888999999999999999999999999999999999999999999888 77777776
Q ss_pred --EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccc
Q 021744 198 --ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV 271 (308)
Q Consensus 198 --~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (308)
.|+..++++|+ |.++++||..++..+ .+.+|.++|.+++|+|+ +|++|+.||.|.+||+.++ +++..+.+
T Consensus 542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~----~~v~~l~~ 617 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG----SLVKQLKG 617 (707)
T ss_pred EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC----cchhhhhc
Confidence 58899999988 999999999999988 78999999999999999 9999999999999999998 88999999
Q ss_pred cCCCeEE-EEecCCCeEEEee---ceEEEEe
Q 021744 272 HTDSNRA-HFSRDVTSLLGSV---SFIMFIG 298 (308)
Q Consensus 272 ~~~~v~~-~~s~d~~~l~~s~---s~~i~~~ 298 (308)
|.+.+.+ .||.||..|++++ ++.+|-.
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999 9999999999665 5555543
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-31 Score=219.48 Aligned_cols=247 Identities=13% Similarity=0.180 Sum_probs=202.9
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
.|++||+|+.||.+|+|+.... +...+..|.++ ++.|+..|.+ ++++.|+++.+||..++....
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~-------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGN-------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred CCCeEEEeecCcEEEEEecCch-------------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 3789999999999999998765 34445667777 8999999999 999999999999997764431
Q ss_pred cccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 102 INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
...-|......+.|-.+..+++.+.|+.|+|+.+... .++.++.+|.++|.++.|+|.+.+|+|+|.|++++||....
T Consensus 313 -~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 -QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred -eeeeccCCccceEEecCceEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 1122222235567777778899999999999999888 89999999999999999999999999999999999999888
Q ss_pred CeEEEEEe-CCCeeEEE-E-c---------CCCEEEE-EcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEE
Q 021744 182 GQCAGVIN-LGGEVGCM-I-S---------EGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAG 245 (308)
Q Consensus 182 ~~~~~~~~-~~~~v~~~-~-~---------~~~~l~~-~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g 245 (308)
..+...+. |...+..+ + | .+..+++ +.|++|++||+..+.++ .+..|..+|++++|+|+ ++|+|
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec
Confidence 77776666 55444433 2 2 2345554 45999999999999988 89899999999999999 99999
Q ss_pred cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
+.||.|.+|+.+++ +.++.+.+. ..|.. +|+.+|..|.++.
T Consensus 471 s~dg~V~iws~~~~----~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 471 SLDGCVHIWSTKTG----KLVKSYQGT-GGIFELCWNAAGDKLGACA 512 (524)
T ss_pred CCCCeeEeccccch----heeEeecCC-CeEEEEEEcCCCCEEEEEe
Confidence 99999999999997 777777654 44667 9999999888765
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=216.58 Aligned_cols=235 Identities=16% Similarity=0.215 Sum_probs=202.4
Q ss_pred CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744 62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG 137 (308)
Q Consensus 62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~ 137 (308)
..+.||.++ ++++.|-... ++|+.|++|+|||+.+++.. ..+.+|...+..+.+++-..+ .++++|+.|+.||++
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk-ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK-LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-EeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 455699999 9999999888 99999999999999998754 355678888999999998877 789999999999999
Q ss_pred CCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEE--cCCCEEEEEc-CCcEE
Q 021744 138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMI--SEGPWIFIGV-TNFVK 213 (308)
Q Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~ 213 (308)
.. +.++.+.||-..|.+++.+|.-..|++|+.|.++++||+++...+..+. |..++..+. +-+..+++|+ |++|+
T Consensus 224 ~n-kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 224 YN-KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hh-hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 99 8999999999999999999999999999999999999999999999999 888888774 3355666666 99999
Q ss_pred EEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744 214 AWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG 289 (308)
Q Consensus 214 ~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~ 289 (308)
+||++.++.. ++..|...+.+++.+|. .||+++.| .|+-|++..+ ..+..+.+|...+++ +...|+-++.+
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g----~f~~nlsgh~~iintl~~nsD~v~~~G 377 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG----EFLQNLSGHNAIINTLSVNSDGVLVSG 377 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc----chhhccccccceeeeeeeccCceEEEc
Confidence 9999999877 89999999999999999 66777665 8999999998 677779999999999 88888865555
Q ss_pred eeceEEEEeecCce
Q 021744 290 SVSFIMFIGQNNKG 303 (308)
Q Consensus 290 s~s~~i~~~~~~~~ 303 (308)
+-...|+.+....+
T Consensus 378 ~dng~~~fwdwksg 391 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSG 391 (460)
T ss_pred CCceEEEEEecCcC
Confidence 55666666654443
No 20
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.4e-31 Score=214.68 Aligned_cols=258 Identities=17% Similarity=0.233 Sum_probs=211.9
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEecCCC--e-eeccCCCcEEEEECCCCC
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFANNTW--G-RNNNFNNHSNNYRAGNSK 98 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~~g~--~-~s~~~d~~i~vwd~~~~~ 98 (308)
+...|.||+.||++|+|+.... ......||.+. +..+.++.. . ++++.|.++++|..+.++
T Consensus 114 ~~~~IltgsYDg~~riWd~~Gk-------------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 114 ASKWILTGSYDGTSRIWDLKGK-------------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cCceEEEeecCCeeEEEecCCc-------------eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 3678999999999999996643 23445688888 455556655 3 999999999999998776
Q ss_pred Ccccc---cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC------------------------ceeeeEeeCcc
Q 021744 99 NSNIN---NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG------------------------FKLLTQLEGHQ 150 (308)
Q Consensus 99 ~~~~~---~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~------------------------~~~~~~~~~h~ 150 (308)
..... -.+|+..|.++...+++.. ++|+.|.+|.+|+..+. +.++-++.||+
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 43322 2488888999999999866 89999999999993210 14556788999
Q ss_pred cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc--e--e
Q 021744 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT--D--L 223 (308)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~--~--~ 223 (308)
++|.++.|++ ...+++++.|.+|+.||+.+++.+..+.......|+ .+..++|++|+ |..|++||.+++. . +
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence 9999999997 778999999999999999999999999988888887 46778888877 9999999999874 2 2
Q ss_pred eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE-EeeceEEEEe
Q 021744 224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSVSFIMFIG 298 (308)
Q Consensus 224 ~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~s~~i~~~ 298 (308)
.+.+|.+.|.++.|+|. .|++|+.|+++++||+++.+ .++..+.+|...|.+ .|+..+ +++ ++.+..|++.
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---APLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIF 415 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---CcceeeccCCceEEEEeccCCc-eEEeccCcceEEEe
Confidence 78899999999999998 89999999999999999973 589999999999999 897654 555 4557777776
Q ss_pred ec
Q 021744 299 QN 300 (308)
Q Consensus 299 ~~ 300 (308)
..
T Consensus 416 ~~ 417 (423)
T KOG0313|consen 416 KG 417 (423)
T ss_pred cc
Confidence 54
No 21
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.3e-31 Score=206.69 Aligned_cols=257 Identities=13% Similarity=0.197 Sum_probs=213.6
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
.|+.||||+.|..|.+|+...+ ......+.||.++ .+.+.+|++. ++++.|++|+.||+++++...
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gd-----------ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGD-----------CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred CCCeEeecCCcceEEEEecccc-----------ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 4789999999999999996655 3444556699999 8999999999 999999999999999997653
Q ss_pred cccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 102 INNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
..+.|...+..+....-|.. .+++.|+++++||+++. ..+++++ .+-.++++.|..++..+.+|+-|+.|++||+
T Consensus 127 -k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 127 -KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred -hhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecccccceeeccccCceeeecc
Confidence 44566666777775444533 77899999999999988 6777765 5678999999999999999999999999999
Q ss_pred CCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCce----e-eeeCC----CCCEEEEEEeCC--EEEE
Q 021744 180 ASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTD----L-SLSGP----VGQVYAMAVGND--LLFA 244 (308)
Q Consensus 180 ~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~----~-~~~~~----~~~v~~~~~~~~--~l~~ 244 (308)
+.+.....+. |..+++.+ +++|.++.+-+ |.++++||.+...+ + .+.+| +.....++|+|+ .+.+
T Consensus 204 r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~a 283 (338)
T KOG0265|consen 204 RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITA 283 (338)
T ss_pred ccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccc
Confidence 9999999998 88888877 58899999866 99999999986422 2 34443 234567889999 8889
Q ss_pred EcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE-eeceEEEEee
Q 021744 245 GTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG-SVSFIMFIGQ 299 (308)
Q Consensus 245 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~-s~s~~i~~~~ 299 (308)
|+.|+.+++||.... ..+..+.+|...|+. .|.|...+|+. +.+..||+..
T Consensus 284 gs~dr~vyvwd~~~r----~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 284 GSADRFVYVWDTTSR----RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ccccceEEEeecccc----cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999986 788999999999999 99999998884 4488888764
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.5e-31 Score=205.43 Aligned_cols=239 Identities=14% Similarity=0.222 Sum_probs=201.6
Q ss_pred Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744 63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD 138 (308)
Q Consensus 63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~ 138 (308)
.+.||.+. .+.|+|+|.. |||+.|..|.+|++-....-.....+|+..|..+.+..+++. ++++.|++++.||+++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 45688888 8999999999 999999999999974332222345689999999999999977 8899999999999999
Q ss_pred CceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE-c-CCCEEEEEc-CCcEEE
Q 021744 139 GFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-S-EGPWIFIGV-TNFVKA 214 (308)
Q Consensus 139 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~-~-~~~~l~~~~-d~~i~~ 214 (308)
+ +.++.+++|.+-|.++.-..-+ .++.|++.|+++++||+++.++++++....++.++. . .+..+++|. |+.|++
T Consensus 122 G-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 G-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred c-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceee
Confidence 9 8999999999999999865544 567899999999999999999999998888888883 3 356677776 999999
Q ss_pred EEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC-----CeEEEEecCCCe
Q 021744 215 WNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD-----SNRAHFSRDVTS 286 (308)
Q Consensus 215 wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~v~~~~s~d~~~ 286 (308)
||++.+... .+.+|.++|+.+..+|+ ++.+-+.|.++++||++......+++..+.+|.. ...++|+|+++.
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 999998887 89999999999999999 9999999999999999976544455677766533 345599999998
Q ss_pred EE-EeeceEEEEeecCc
Q 021744 287 LL-GSVSFIMFIGQNNK 302 (308)
Q Consensus 287 l~-~s~s~~i~~~~~~~ 302 (308)
+. ++.+..+|+|....
T Consensus 281 i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTS 297 (338)
T ss_pred cccccccceEEEeeccc
Confidence 87 56688889888655
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-31 Score=228.15 Aligned_cols=227 Identities=20% Similarity=0.243 Sum_probs=190.6
Q ss_pred CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCC
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSK 98 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~ 98 (308)
...|.+|+|+|.|+++++|+.++.. + .........||++. +++++..+.- +++|.|.++++|++...+
T Consensus 374 ~~~g~llat~sKD~svilWr~~~~~---~-----~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~ 445 (775)
T KOG0319|consen 374 WSSGDLLATGSKDKSVILWRLNNNC---S-----KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSK 445 (775)
T ss_pred cccCcEEEEecCCceEEEEEecCCc---c-----hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcc
Confidence 4556899999999999999884330 0 01122345688888 8888776655 999999999999995422
Q ss_pred ----Cccc----ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744 99 ----NSNI----NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS 169 (308)
Q Consensus 99 ----~~~~----~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 169 (308)
++.- ....|.+.+.++++.|+... ++|+.|++.+||+++.. .....+.||+..|+++.|+|..+.++|+|
T Consensus 446 ~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 446 ETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCS 524 (775)
T ss_pred cccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEecc
Confidence 1111 23568888999999999876 99999999999999988 89999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EE
Q 021744 170 KDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LL 242 (308)
Q Consensus 170 ~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l 242 (308)
.|++|+||.+.++.+++++. |...+... ..+++.|+++. ||-+++|+++++++. ++.+|++.|++++.+|. .+
T Consensus 525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMF 604 (775)
T ss_pred CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcccee
Confidence 99999999999999999999 77766533 46788888655 999999999999998 99999999999999998 89
Q ss_pred EEEcCCCeEEEEEcCC
Q 021744 243 FAGTQDGAILAWKFNV 258 (308)
Q Consensus 243 ~~g~~dg~i~iwd~~~ 258 (308)
++|+.||.|.+|.=.+
T Consensus 605 ~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 605 VTGGGDGRIIFWKDVT 620 (775)
T ss_pred EecCCCeEEEEeecCc
Confidence 9999999999996443
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-30 Score=214.43 Aligned_cols=272 Identities=14% Similarity=0.165 Sum_probs=221.8
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCcccccc-----c-eeEEecCCCe-eeccCCCcEEEEECCCCCC
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGA-----A-AKRFANNTWG-RNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~-----~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~ 99 (308)
.++|+++.|-+.|+|+.... ...+.-.. +......+.++.. - +++|+.+|.. |+|+.||.+|+|+......
T Consensus 192 ~llasg~~~s~ari~~l~e~-~~~~~~q~-~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~ 269 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLEN-SNIGSTQL-VLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI 269 (524)
T ss_pred hhhhccCCccceeeeeehhh-ccccchhh-hhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh
Confidence 47999999999999997641 11111000 0000111112221 1 8999999999 9999999999999865543
Q ss_pred cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744 100 SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (308)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd 178 (308)
. ....|++++..+.+...|.+ ++++.|+++.+||..++ +..+.+.-|..+-..+.|-. ...+++++.|+.|+++-
T Consensus 270 ~--tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~k 345 (524)
T KOG0273|consen 270 S--TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCK 345 (524)
T ss_pred h--hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEEeeeeccCCccceEEec-CceEeecCCCceEEEEE
Confidence 3 66778899999999999987 89999999999999999 78888888888878888874 45799999999999999
Q ss_pred CCCCeEEEEEe-CCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-----------EE
Q 021744 179 CASGQCAGVIN-LGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-----------LL 242 (308)
Q Consensus 179 ~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-----------~l 242 (308)
+....++.++. |.+++.++- +.+.+|++++ |+++++|........ .+.+|+..|..+.|+|. .+
T Consensus 346 v~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l 425 (524)
T KOG0273|consen 346 VGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML 425 (524)
T ss_pred ecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence 99999999988 888999883 5699999877 999999998877766 89999999999999983 89
Q ss_pred EEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee---ceEEEEeecCceeEEeC
Q 021744 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFIGQNNKGVVCYR 308 (308)
Q Consensus 243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~~~~~~~~ 308 (308)
++++.|++|++||+..+ .++.+|..|..+|.+ +|+|+|++++++. .+.||..+..+-+.+|+
T Consensus 426 ~sas~dstV~lwdv~~g----v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVESG----VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred EEeecCCeEEEEEccCC----ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 99999999999999998 889999999999999 9999999999654 56666666777777775
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=220.94 Aligned_cols=256 Identities=16% Similarity=0.237 Sum_probs=213.1
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
.+.+|++++.|+.|+||++... ......+.||..+ .++|+++|.. .|++.|+.|++||+++|+..
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~-----------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~- 293 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDD-----------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL- 293 (503)
T ss_pred eeeEEEecCCCceEEEEEEecC-----------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE-
Confidence 4678999999999999998764 4567788999988 8999999999 99999999999999999765
Q ss_pred cccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 102 INNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
........+.++.|.|++ +. ++|+.|+.|+.||++++ +.++++..|-+.|..+.|-++++.+++.+.|+++++|+.
T Consensus 294 -~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 294 -SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWEN 371 (503)
T ss_pred -EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEc
Confidence 222223347888999998 33 89999999999999999 899999999999999999999999999999999999999
Q ss_pred CCCeEEEEEe----CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCce----eeeeCCC--CCEEEEEEeCC--EEEEEc
Q 021744 180 ASGQCAGVIN----LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTD----LSLSGPV--GQVYAMAVGND--LLFAGT 246 (308)
Q Consensus 180 ~~~~~~~~~~----~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~----~~~~~~~--~~v~~~~~~~~--~l~~g~ 246 (308)
+....++.+. |..+...+.|+++++++-+ |+.|.+|.+...-. ..+.+|. +.-..+.|||| +|++|.
T Consensus 372 ~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 372 RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred CCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 9888777665 3334444578999999766 99999998654322 2566665 45677899999 999999
Q ss_pred CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEe
Q 021744 247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIG 298 (308)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~ 298 (308)
.||.+.+||.++. +.+..++.|..++.. .|.|...--++++ +..|.+|
T Consensus 452 sdG~v~~wdwkt~----kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 452 SDGKVNFWDWKTT----KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred CCccEEEeechhh----hhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 9999999999996 888999999888888 9999876655444 5566554
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=1.8e-30 Score=197.67 Aligned_cols=219 Identities=16% Similarity=0.231 Sum_probs=184.4
Q ss_pred eeccCCCcEEEEECCCCCCcccccceee-eeeeeeeeecCCceEEeeCCCeEEEEEcCCCce-eeeEeeCcccceEEEEE
Q 021744 81 RNNNFNNHSNNYRAGNSKNSNINNRAVI-KTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFK-LLTQLEGHQKVVSGITL 158 (308)
Q Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~-~~~~~~~h~~~v~~~~~ 158 (308)
|++++|.+||+|...+|... ....|. ..|..+...|++..+.+.....||+||+++... ++.++.+|++.|+++.|
T Consensus 14 vsA~YDhTIRfWqa~tG~C~--rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALTGICS--RTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EeccCcceeeeeehhcCeEE--EEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 99999999999999988665 333343 348899999999887777789999999998753 79999999999999999
Q ss_pred eCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee--eeeCCCCCEE
Q 021744 159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL--SLSGPVGQVY 233 (308)
Q Consensus 159 ~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~--~~~~~~~~v~ 233 (308)
..+|+.+++|++||+++|||++.-++.+.+++..++.++. |+...|++|. +|.|++||+....+. .+......|.
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~ 171 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ 171 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence 9999999999999999999999988888899999999874 6677888887 999999999988655 3344556899
Q ss_pred EEEEeCC--EEEEEcCCCeEEEEEcCCCCc--ccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEeecC
Q 021744 234 AMAVGND--LLFAGTQDGAILAWKFNVTTN--CFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNN 301 (308)
Q Consensus 234 ~~~~~~~--~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~ 301 (308)
++.+.|| +++.+...|..++|++..... .++++..++.|..-+.. .+|||+++|++++ +..++++...
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 9999999 889999999999999876422 25677888899998887 9999999999655 6666665533
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.1e-30 Score=194.99 Aligned_cols=247 Identities=15% Similarity=0.238 Sum_probs=202.1
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
.|++.+|++.|++||+||+..+ .+-..+.||... .++.+.|... ++++.|+.|.+||+++++...
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R 95 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRG------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR 95 (307)
T ss_pred CCCEEEEcCCCceEEeeccccc------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee
Confidence 4678999999999999998887 344556777766 7778888888 999999999999999998763
Q ss_pred cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC-ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
..++|...+..+.|..+... ++|+-|..+++||.+.. .++++.+..-.+.|.++.+. +..+++||.||+++.||+
T Consensus 96 -r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydi 172 (307)
T KOG0316|consen 96 -RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDI 172 (307)
T ss_pred -ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEe
Confidence 56788899999999998877 88999999999999865 36788888888999999886 458999999999999999
Q ss_pred CCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEE--EEEeCC--EEEEEcCCCeE
Q 021744 180 ASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYA--MAVGND--LLFAGTQDGAI 251 (308)
Q Consensus 180 ~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~--~~~~~~--~l~~g~~dg~i 251 (308)
+.|+...-+ ...+++|+ +++++..++++ |+++++.|-.+++++ .+++|.+.-+. .+++.. .+++|++||.|
T Consensus 173 R~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~V 251 (307)
T KOG0316|consen 173 RKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKV 251 (307)
T ss_pred ecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceE
Confidence 988765433 45566655 68888888777 999999999999988 78888765433 333333 99999999999
Q ss_pred EEEEcCCCCcccccceeccccCCC-eEE-EEecCCCeEEEee
Q 021744 252 LAWKFNVTTNCFEPAASLKVHTDS-NRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~-v~~-~~s~d~~~l~~s~ 291 (308)
++||+... ..+..+..+... +.. ++.|.-.-+++++
T Consensus 252 y~wdLvd~----~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 252 YFWDLVDE----TQISKLSVVSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred EEEEeccc----eeeeeeccCCceeEEeeecccCccceeEec
Confidence 99999986 667778777777 555 8888766665444
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=9e-30 Score=203.43 Aligned_cols=258 Identities=12% Similarity=0.152 Sum_probs=210.4
Q ss_pred eEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCC
Q 021744 11 RVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNN 87 (308)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~ 87 (308)
.||.-.-+| .++++|||+.|..-.+|+..++ +....+.||..+ ++.|+.+|.+ |||..+|
T Consensus 66 svFavsl~P-----~~~l~aTGGgDD~AflW~~~~g------------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 66 SVFAVSLHP-----NNNLVATGGGDDLAFLWDISTG------------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred ceEEEEeCC-----CCceEEecCCCceEEEEEccCC------------cceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence 355444444 4689999999999999999998 355567799888 8999999999 9999999
Q ss_pred cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE
Q 021744 88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY 166 (308)
Q Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 166 (308)
.|+||+..++....... ..-..+.=+.++|.+.. +.|+.||.+-.|.+.+. ...+.+.||..++++=.|.|+|+.++
T Consensus 129 ~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred cEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEE
Confidence 99999997764321111 12222445677887766 88999999999999987 67889999999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCeEEEEEeCCC----e------------------eEEE----------EcC--------------
Q 021744 167 SGSKDETVRVWDCASGQCAGVINLGG----E------------------VGCM----------ISE-------------- 200 (308)
Q Consensus 167 s~s~dg~v~~wd~~~~~~~~~~~~~~----~------------------v~~~----------~~~-------------- 200 (308)
++..||+|++||..+++++..+.... + ..++ +.+
T Consensus 207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 99999999999999999887765100 0 0000 001
Q ss_pred -----------CCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccce
Q 021744 201 -----------GPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAA 267 (308)
Q Consensus 201 -----------~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~ 267 (308)
=.+.++|+ ||+|.+||+........-.|...|..+.|.++ +|++++.+|.|+.||.+++ +++.
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG----~l~~ 362 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG----QLKF 362 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc----ceEE
Confidence 12344566 99999999999888877889999999999997 9999999999999999998 8899
Q ss_pred eccccCCCeEE-EEecCCCeEEEee
Q 021744 268 SLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 268 ~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
++.+|...|.. +++|+++++++.+
T Consensus 363 ~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 363 TYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred EEecCchheeEEEEcCCCcEEEEec
Confidence 99999999999 9999999998554
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=5.5e-29 Score=207.43 Aligned_cols=269 Identities=15% Similarity=0.166 Sum_probs=211.5
Q ss_pred CCCceEEecCCCeEEEeecCCCCC---CCCCcccc-------------------------------cCCCCCCccccccc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNR---FPCPYLHR-------------------------------ELPLPPAATANGAA 70 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~---~~~~~~~~-------------------------------~~~~~~~~~gh~~~ 70 (308)
.|-++|+|...|+||+|+.....+ +..+.+.. .-.....+.||...
T Consensus 70 sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ 149 (603)
T KOG0318|consen 70 SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRR 149 (603)
T ss_pred CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeecccee
Confidence 366999999999999999664211 11110000 00001123377666
Q ss_pred --eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeE
Q 021744 71 --AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQ 145 (308)
Q Consensus 71 --~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~ 145 (308)
++.|-|.... +||+.|++|.+|+=. +-......+.|.+.|.+++|+|+|.. ++.+.||.|.+||-.++ +.+..
T Consensus 150 ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg-e~vg~ 227 (603)
T KOG0318|consen 150 INSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG-EKVGE 227 (603)
T ss_pred EeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc-cEEEE
Confidence 7888888887 899999999998742 22233355778888999999999977 99999999999999999 78888
Q ss_pred ee---CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC-----CCeeEEEEcCCCEEEEEcCCcEEEEEc
Q 021744 146 LE---GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-----GGEVGCMISEGPWIFIGVTNFVKAWNT 217 (308)
Q Consensus 146 ~~---~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-----~~~v~~~~~~~~~l~~~~d~~i~~wd~ 217 (308)
+. +|++.|.+++|+||++.++|++.|.+++|||+.+.++++++.. ...+.|++.++.++.++.+|.|.+++.
T Consensus 228 l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~ 307 (603)
T KOG0318|consen 228 LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNP 307 (603)
T ss_pred ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecc
Confidence 87 8999999999999999999999999999999999999999984 345778889777777888999999999
Q ss_pred CCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeece
Q 021744 218 QTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293 (308)
Q Consensus 218 ~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~ 293 (308)
...... .+.+|...|+++..+|+ +|++|+.||.|.-|+..++.. ....-+.|...|.. +-+..+.++..+.+.
T Consensus 308 ~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~---~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd 384 (603)
T KOG0318|consen 308 SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS---DRLAGKGHTNQIKGMAASESGELFTIGWDD 384 (603)
T ss_pred cCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc---cccccccccceEEEEeecCCCcEEEEecCC
Confidence 988866 88999999999999999 999999999999999998732 11122578888888 666656666666666
Q ss_pred EEEEe
Q 021744 294 IMFIG 298 (308)
Q Consensus 294 ~i~~~ 298 (308)
.+...
T Consensus 385 ~l~~~ 389 (603)
T KOG0318|consen 385 TLRVI 389 (603)
T ss_pred eEEEE
Confidence 66655
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=8.7e-29 Score=205.28 Aligned_cols=254 Identities=21% Similarity=0.313 Sum_probs=204.2
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
+.++++++.|+.+++|+..... ......+|... .+.|+|+++. ++++.|+.|++||+.+++...
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~- 87 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGE------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR- 87 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCC------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE-
Confidence 5789999999999999988661 11122344434 6899999988 999999999999998754432
Q ss_pred ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
....+...+..+.+.+++.. ++++.++.|++||+.+. +....+..|...+.+++|+|++.++++++.|+.|++||+++
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 23345556888999998777 45555999999999987 77888888999999999999988899888899999999998
Q ss_pred CeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744 182 GQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (308)
Q Consensus 182 ~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iw 254 (308)
++.+..+. +...+.++ .++++.++++. ++.|++||+++++.. .+..|...+.++.|+|+ ++++++.||.|++|
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~ 246 (289)
T cd00200 167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246 (289)
T ss_pred cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 88888877 44466665 46676777665 999999999988777 56588889999999997 77777779999999
Q ss_pred EcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744 255 KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFI 297 (308)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~ 297 (308)
|+.++ +++..+..|...+.. .|+|++.+|++++ +..+.+
T Consensus 247 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 247 DLRTG----ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred EcCCc----eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence 99986 667778888889999 9999988888655 444444
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-30 Score=210.54 Aligned_cols=264 Identities=11% Similarity=0.188 Sum_probs=216.0
Q ss_pred CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~ 99 (308)
|..|.++||+|.|.+..+|.+....+ ..+...+.||..+ .+.||||.++ ++++.|..+++||+.+++.
T Consensus 233 S~nGkyLAsaSkD~Taiiw~v~~d~~---------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~ 303 (519)
T KOG0293|consen 233 SHNGKYLASASKDSTAIIWIVVYDVH---------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL 303 (519)
T ss_pred cCCCeeEeeccCCceEEEEEEecCcc---------eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh
Confidence 56688999999999999999765521 3455677888888 7999999999 9999999999999999987
Q ss_pred cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCc-ccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744 100 SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGSKDETVRVW 177 (308)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~v~~w 177 (308)
...-..++...+.+|+|.|+|.. ++|+.|+.|..||+... .+...++- ...|.+++..+||+++++...|..++++
T Consensus 304 ~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn--~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~ 381 (519)
T KOG0293|consen 304 RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN--ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLY 381 (519)
T ss_pred hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc--hhhcccccccceeEEEEEcCCCcEEEEEecccceeee
Confidence 65555555667999999999965 99999999999999865 24444443 3579999999999999999999999999
Q ss_pred eCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC--EEEEEEeC--C-EEEEEcCC
Q 021744 178 DCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ--VYAMAVGN--D-LLFAGTQD 248 (308)
Q Consensus 178 d~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~--v~~~~~~~--~-~l~~g~~d 248 (308)
+.++...+..+..+.++.++ +.+++++++.- +..+++||++....+ .+.+|... +..-+|-. + ++++|++|
T Consensus 382 ~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 382 NREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred chhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 99988777777777777766 56788888876 889999999966555 67787653 33444543 3 99999999
Q ss_pred CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEeecC
Q 021744 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQNN 301 (308)
Q Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~~~ 301 (308)
+.|+||+..++ +++.++.+|...|++ +|+|....+++|+ +.+|-||...
T Consensus 462 ~kvyIWhr~sg----kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 462 SKVYIWHRISG----KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEEEEccCC----ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999998 899999999999999 9999888777665 6666666543
No 32
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.4e-31 Score=200.79 Aligned_cols=259 Identities=15% Similarity=0.147 Sum_probs=218.2
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
|=.+++++.|+.--+=+-.++ .=-..+.||.++ ....+.+... |+++.|-+-+|||.-++..+
T Consensus 29 g~flisa~kd~~pmlr~g~tg------------dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel-- 94 (334)
T KOG0278|consen 29 GYFLISASKDGKPMLRNGDTG------------DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL-- 94 (334)
T ss_pred ceEEEEeccCCCchhccCCCC------------CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh--
Confidence 557888888876665555544 112356788887 4455556666 99999999999999888766
Q ss_pred ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
....|+.-|..|+|+.+... ++|+.++.+||||++....+..++.+|++.|..+-|....+.++|.+.|++|++||.++
T Consensus 95 hsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT 174 (334)
T KOG0278|consen 95 HSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT 174 (334)
T ss_pred hhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence 55667778999999999865 99999999999999988778889999999999999999889999999999999999999
Q ss_pred CeEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcC
Q 021744 182 GQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (308)
Q Consensus 182 ~~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~ 257 (308)
+..++.+..+.+++++ +++|++|.++..+.|.+||..+..++....-+..|.+.+.+|+ .+++|++|..++.||+.
T Consensus 175 gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 175 GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred CcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEecc
Confidence 9999999988888876 6899999999999999999999888855455678999999999 99999999999999999
Q ss_pred CCCcccccceec-cccCCCeEE-EEecCCCeEEE-eeceEEEEeecCc
Q 021744 258 VTTNCFEPAASL-KVHTDSNRA-HFSRDVTSLLG-SVSFIMFIGQNNK 302 (308)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~v~~-~~s~d~~~l~~-s~s~~i~~~~~~~ 302 (308)
++ +.+..+ ++|.++|.+ .|+|||..-++ |-+.+|.+||.+-
T Consensus 255 Tg----eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 255 TG----EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CC----ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 98 555554 799999999 99999987774 4488888888543
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5e-29 Score=219.70 Aligned_cols=227 Identities=18% Similarity=0.309 Sum_probs=190.9
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCC-CcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSK-NSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE 147 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~ 147 (308)
++.|+|+|.. ++++.|+.+++|+..+.+ .......+|...+..++|++++.+ ++++.|++|+|||+......+++++
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec
Confidence 7899999999 999999999999996655 122234678888999999999977 8999999999999954437899999
Q ss_pred CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc--
Q 021744 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT-- 221 (308)
Q Consensus 148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~-- 221 (308)
+|...|++++|+|+++++++|+.|++|++||+++++++..+. |...+.++ .+++.+|++++ |+.|++||+.+++
T Consensus 244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 999999999999999999999999999999999999999999 77777766 46788999877 9999999999999
Q ss_pred ee-eeeCCCC--CEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE----EEecCCCeEEEee-
Q 021744 222 DL-SLSGPVG--QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA----HFSRDVTSLLGSV- 291 (308)
Q Consensus 222 ~~-~~~~~~~--~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~----~~s~d~~~l~~s~- 291 (308)
+. .+..+.. +++++.|+|+ ++++++.|+.+++||+... ..+..+.+|...+++ .+++.+.+++++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 324 CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG----KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC----cceeeecccCCcceeEecccccCCCCeEEEEeC
Confidence 33 5555554 4999999999 9999999999999999987 777888888775333 4467888888665
Q ss_pred ceEEEEeecC
Q 021744 292 SFIMFIGQNN 301 (308)
Q Consensus 292 s~~i~~~~~~ 301 (308)
+..|+++.-.
T Consensus 400 d~~v~~~~~~ 409 (456)
T KOG0266|consen 400 DGSVYVWDSS 409 (456)
T ss_pred CceEEEEeCC
Confidence 6666665543
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.7e-28 Score=189.04 Aligned_cols=274 Identities=15% Similarity=0.186 Sum_probs=211.1
Q ss_pred eEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCC
Q 021744 11 RVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNN 87 (308)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~ 87 (308)
|++.-..++.. |.+|||+|.|+.||+|+...+..+.|.-.. -.+|... .++++|.|++ |+||.|.
T Consensus 16 r~W~~awhp~~----g~ilAscg~Dk~vriw~~~~~~s~~ck~vl--------d~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 16 RVWSVAWHPGK----GVILASCGTDKAVRIWSTSSGDSWTCKTVL--------DDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred cEEEEEeccCC----ceEEEeecCCceEEEEecCCCCcEEEEEec--------cccchheeeeeeecCCCcEEEEeeccc
Confidence 67776776632 568999999999999998864334443221 1266666 8999999999 9999999
Q ss_pred cEEEEECCCCCCcc-cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC--CceeeeEeeCcccceEEEEEeCCCC
Q 021744 88 HSNNYRAGNSKNSN-INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGSD 163 (308)
Q Consensus 88 ~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (308)
++-||.-..++... ..+.+|+..|.+++|+++|.+ ++++.|+.|-||.+.. ..+....|++|+..|..+.|+|...
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 99999887655332 245788999999999999988 8999999999999983 3467889999999999999999999
Q ss_pred EEEEeeCCCcEEEEeCC---CCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEE
Q 021744 164 KLYSGSKDETVRVWDCA---SGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMA 236 (308)
Q Consensus 164 ~l~s~s~dg~v~~wd~~---~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~ 236 (308)
+|+|+|+|.+|++|.-. .-++++++. +...+.++ .+.|..|++++ |+++++|-..+. .-..|+.+++.+.
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVP 240 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeee
Confidence 99999999999999876 246777887 66677776 35688888887 899999976522 2234778999999
Q ss_pred EeCCEEEEEcCCCeEEEEEcCCCC--cccccce-eccccCCCeEE-EEecC-CCeEEEee-ceEEEEee
Q 021744 237 VGNDLLFAGTQDGAILAWKFNVTT--NCFEPAA-SLKVHTDSNRA-HFSRD-VTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 237 ~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~-~~~~~~~~v~~-~~s~d-~~~l~~s~-s~~i~~~~ 299 (308)
|....|++++.|+.|++|.-.... +.++++. .-..|...|++ .|.|. ...|++++ +..+-++.
T Consensus 241 W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 241 WDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred ecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 994499999999999999876531 2233333 23478999999 99995 34444444 55554443
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.4e-29 Score=214.55 Aligned_cols=258 Identities=16% Similarity=0.174 Sum_probs=206.8
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCC-CcEEEEECCCCCCcccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFN-NHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d-~~i~vwd~~~~~~~~~~ 103 (308)
-.++|++=..|...++..... ..+|.-.-. .|.-..++|+..|.- |.|+.. |.+-||+..+...+ ..
T Consensus 277 t~~lvvgFssG~f~LyelP~f-----~lih~LSis-----~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV-lK 345 (893)
T KOG0291|consen 277 TNLLVVGFSSGEFGLYELPDF-----NLIHSLSIS-----DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV-LK 345 (893)
T ss_pred ceEEEEEecCCeeEEEecCCc-----eEEEEeecc-----cceeeEEEecccCCEEEEcCCccceEEEEEeecccee-ee
Confidence 357888888888888887655 112211000 011116899999998 655544 89999999655443 35
Q ss_pred cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744 104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~ 182 (308)
+++|...+.++.++|+|.. ++|++||.|+|||...+ -++.+|..|+..|+.+.|+..++.+++.+.||+|+.||+...
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 6778888999999999977 99999999999999999 789999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCee--EEEE--cCCCEEEEEc-CC-cEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744 183 QCAGVINLGGEV--GCMI--SEGPWIFIGV-TN-FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (308)
Q Consensus 183 ~~~~~~~~~~~v--~~~~--~~~~~l~~~~-d~-~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i 253 (308)
+..+++..+.++ .|+. +.|.++++|. |. .|.+|++.+|+++ .+.+|+++|.+++|+|+ .|++++.|.+|++
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 999999966655 4554 5589999888 66 8999999999999 89999999999999999 9999999999999
Q ss_pred EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
||+-... ..+.++. +...+.. +|.|||+.|+++. +..|-++.
T Consensus 505 W~if~s~---~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 505 WDIFSSS---GTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred EEeeccC---ceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 9998752 3455554 3445566 9999999998665 54444443
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=9.3e-29 Score=206.10 Aligned_cols=261 Identities=12% Similarity=0.150 Sum_probs=200.7
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
|.++||.+.|+++.++|-.++.+ + . ...--.+|.+. +++|+||+.. +|++.|+++||||+.+.+....
T Consensus 202 G~~Fat~gsDgki~iyDGktge~-----v-g---~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTGEK-----V-G---ELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred CCeEEEecCCccEEEEcCCCccE-----E-E---EecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence 78999999999999999887711 0 0 11113478877 9999999999 9999999999999988866544
Q ss_pred ccceeee-eeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 103 NNRAVIK-TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 103 ~~~~~~~-~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
...+..- ....-+.|..+.+++-+.+|+|.++++... ..++.+.||...|+++..+|++++|++|+.||.|.-|+..+
T Consensus 273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP-SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC-ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 3333321 123334556777899999999999999999 68999999999999999999999999999999999999876
Q ss_pred CeEEE-----------EEe-CC------------------------------------------C---------------
Q 021744 182 GQCAG-----------VIN-LG------------------------------------------G--------------- 192 (308)
Q Consensus 182 ~~~~~-----------~~~-~~------------------------------------------~--------------- 192 (308)
+..-+ .+. .+ .
T Consensus 352 g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l 431 (603)
T KOG0318|consen 352 GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL 431 (603)
T ss_pred ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence 43221 000 00 0
Q ss_pred ---------------eeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCC--EEEEEcCCCeE
Q 021744 193 ---------------EVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAI 251 (308)
Q Consensus 193 ---------------~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg~i 251 (308)
...++.+++..+++|. |+.|++|.+...+.. .+..|..+|++++++|| +||+|...+.+
T Consensus 432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 0001234677888877 999999999886543 56789999999999999 99999999999
Q ss_pred EEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 252 LAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
.+||+.+.. .....+.-|...|.+ +|+|+.+++++++ +-.++++.
T Consensus 512 v~yd~~s~~---~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 512 VLYDVASRE---VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEEcccCc---eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 999999873 233445569999999 9999999888555 54444443
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.7e-29 Score=214.47 Aligned_cols=222 Identities=17% Similarity=0.241 Sum_probs=180.8
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
.|.+||||+.|+.|+|||..++ -...++..|+.. .+.|+..|+. ++++-||+||.||+...+...
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~Sg------------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSG------------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCc------------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 3679999999999999999885 123344556666 7899999999 999999999999998776665
Q ss_pred cccceeeeeeeeeeeecCCce-EEeeCCC-eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 102 INNRAVIKTDILCRNWVQGNC-MYGEKCK-FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~-~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
....+......+++.-|.|.. ..|+.|. .|++|+++++ +.+..+.||+++|.+++|+|+++.|+|+|.|++|++||+
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 555555555677888888987 4555554 5999999999 899999999999999999999999999999999999998
Q ss_pred CC-CeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-ee----------------e----CCCCCEEE
Q 021744 180 AS-GQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SL----------------S----GPVGQVYA 234 (308)
Q Consensus 180 ~~-~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~----------------~----~~~~~v~~ 234 (308)
-. ...+.++.....+..+ .|+|+.|+++. ||.|.+||.+.+... .+ . ......++
T Consensus 508 f~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt 587 (893)
T KOG0291|consen 508 FSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT 587 (893)
T ss_pred eccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE
Confidence 64 4567777766666655 58999999876 999999998765322 11 1 12357899
Q ss_pred EEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744 235 MAVGND--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 235 ~~~~~~--~l~~g~~dg~i~iwd~~~~ 259 (308)
+++++| .+++|+..+.|++||++++
T Consensus 588 i~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 588 ICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEEcCCCCEEEecCCcccEEEEECchh
Confidence 999999 8999999999999998764
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.5e-29 Score=216.05 Aligned_cols=257 Identities=14% Similarity=0.161 Sum_probs=212.3
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc--
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS-- 100 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~-- 100 (308)
.+.+|.++..+.+|+++..+. .-..+.||+.. ++....+|.. +||+.|+++++|.++.+...
T Consensus 336 ~~~laVATNs~~lr~y~~~~~-------------~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~ 402 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTS-------------YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL 402 (775)
T ss_pred cceEEEEeCCCceEEEecCCC-------------ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh
Confidence 368999999999999976653 11256799888 6666678877 99999999999999544322
Q ss_pred -ccccceeeeeeeeeeeecCC-c-eEEeeCCCeEEEEEcCCCc--e--eee----EeeCcccceEEEEEeCCCCEEEEee
Q 021744 101 -NINNRAVIKTDILCRNWVQG-N-CMYGEKCKFLHSWTVGDGF--K--LLT----QLEGHQKVVSGITLPSGSDKLYSGS 169 (308)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~-~-~~~g~~d~~i~iwd~~~~~--~--~~~----~~~~h~~~v~~~~~~~~~~~l~s~s 169 (308)
.....+|...+.+++++..+ . +++++.|.++++|++...+ . ... .-..|...|++++++|+.++++|||
T Consensus 403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence 22346778888888887666 3 3999999999999997621 1 111 2246999999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EE
Q 021744 170 KDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LL 242 (308)
Q Consensus 170 ~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l 242 (308)
.|++.++|+++..+.+.++. |...+.|+ ++..+.+++++ |++|++|.+.+..++ ++.+|...|..+.|-.+ .|
T Consensus 483 qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 483 QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEE
Confidence 99999999999999999998 77788887 46677888776 999999999999998 89999999999999877 99
Q ss_pred EEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
++++.||.|++|++.+. +++.++..|.+.|++ +-+|...++++++ +..|..|.
T Consensus 563 iS~~adGliKlWnikt~----eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTN----ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EeccCCCcEEEEeccch----hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999997 999999999999999 9999998887554 55555554
No 39
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=4.2e-29 Score=220.28 Aligned_cols=254 Identities=19% Similarity=0.277 Sum_probs=210.0
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
...+++++.|++|++|+...+ .....++.||.+. ++++...+.. ++|+.|.++|+||..+++....
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-----------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-----------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred cCeEEecCCCceeEEeecccc-----------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 467899999999999998887 5556668899998 7888776666 9999999999999999877643
Q ss_pred ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744 103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~ 182 (308)
..+|...+.++...+ ...++|+.|.+|++|++.++ +.+..+.+|.++|.++..+ +.++++|+.|++|++||+.++
T Consensus 287 -l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~ 361 (537)
T KOG0274|consen 287 -LQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG 361 (537)
T ss_pred -ecCCCceEEEEEccC-ceEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc
Confidence 335666555544332 24477899999999999999 8999999999999999998 779999999999999999999
Q ss_pred eEEEEEe-CCCeeEEEEcCC-CEEEEEc-CCcEEEEEcCCC-cee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcC
Q 021744 183 QCAGVIN-LGGEVGCMISEG-PWIFIGV-TNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN 257 (308)
Q Consensus 183 ~~~~~~~-~~~~v~~~~~~~-~~l~~~~-d~~i~~wd~~~~-~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 257 (308)
+++..+. |...+.++..++ ..+++|+ |++|++||+++. +++ ++.+|..-+.++.+....|++++.|+.|++||..
T Consensus 362 ~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 362 KCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred eeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecc
Confidence 9999999 889999988777 8888887 999999999999 777 8999999998888887799999999999999999
Q ss_pred CCCcccccceeccc-cCCCeEE-EEecCCCeEEEee--ceEEEEeec
Q 021744 258 VTTNCFEPAASLKV-HTDSNRA-HFSRDVTSLLGSV--SFIMFIGQN 300 (308)
Q Consensus 258 ~~~~~~~~~~~~~~-~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~~ 300 (308)
++ ++++++.+ |...+.+ .+. +...+.++. ...+|...+
T Consensus 442 ~~----~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 442 EG----ECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cC----ceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence 97 78888887 6677777 665 333344444 455554433
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.5e-28 Score=227.20 Aligned_cols=266 Identities=11% Similarity=0.151 Sum_probs=195.4
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecC-CCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANN-TWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~-g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
+.++||++.|++|++|+....... ....+ .+.. ...++... +++|+|. +.+ ++++.|++|++||+.+++.+.
T Consensus 495 g~~latgg~D~~I~iwd~~~~~~~-~~~~~--~~~~-~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~- 569 (793)
T PLN00181 495 GEFFATAGVNKKIKIFECESIIKD-GRDIH--YPVV-ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT- 569 (793)
T ss_pred CCEEEEEeCCCEEEEEECCccccc-ccccc--cceE-EecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE-
Confidence 578999999999999997542000 00000 0110 11223222 7888764 666 999999999999998775542
Q ss_pred ccceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEe-CCCCEEEEeeCCCcEEEEeC
Q 021744 103 NNRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLP-SGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~v~~wd~ 179 (308)
....|...+..+.|++ ++.. ++|+.|+.|++||+.++ ..+..+..+ ..|.++.|+ +++.++++|+.|+.|++||+
T Consensus 570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~ 647 (793)
T PLN00181 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDL 647 (793)
T ss_pred EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 3456778899999986 5554 89999999999999988 677777754 689999995 56899999999999999999
Q ss_pred CCCe-EEEEEe-CCCeeEEE-EcCCCEEEEEc-CCcEEEEEcCCC------cee-eeeCCCCCEEEEEEeCC--EEEEEc
Q 021744 180 ASGQ-CAGVIN-LGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQTN------TDL-SLSGPVGQVYAMAVGND--LLFAGT 246 (308)
Q Consensus 180 ~~~~-~~~~~~-~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~~~------~~~-~~~~~~~~v~~~~~~~~--~l~~g~ 246 (308)
++.+ .+..+. |...+.++ +.++.++++++ |++|++||++.. ..+ .+.+|...+.+++|+|+ +|++|+
T Consensus 648 ~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 648 RNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 8765 444554 66777776 56778888766 999999999853 233 78899999999999998 999999
Q ss_pred CCCeEEEEEcCCCCccc-------ccce--eccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744 247 QDGAILAWKFNVTTNCF-------EPAA--SLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG 298 (308)
Q Consensus 247 ~dg~i~iwd~~~~~~~~-------~~~~--~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~ 298 (308)
.|+.|++|+........ ..+. ....+...|.+ +|+|++..|++++ +..|.++
T Consensus 728 ~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 728 ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 99999999987542100 0011 12345567888 9999999988665 5555554
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.5e-29 Score=187.90 Aligned_cols=229 Identities=16% Similarity=0.153 Sum_probs=190.8
Q ss_pred Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCc-eEEeeCCCeEEEEEcCC
Q 021744 63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGD 138 (308)
Q Consensus 63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~iwd~~~ 138 (308)
.+..++++ ++.|+-+|++ ++++.|++||+|+...+..+. ...+|...+.....+.++. +++++.|..+.+||+.+
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-eecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 44566777 8999999999 999999999999997765542 4456777788888777774 48899999999999999
Q ss_pred CceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC--CeEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEE
Q 021744 139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS--GQCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKA 214 (308)
Q Consensus 139 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~--~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~ 214 (308)
+ +.++.+.+|.+.|..+.|+.+...+++|+.|.++++||-++ .++++.+. ....+.++-..+..|++|+ ||+++.
T Consensus 91 G-kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 91 G-KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRT 169 (307)
T ss_pred C-eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEE
Confidence 9 89999999999999999999999999999999999999886 56777776 5566777767777788777 999999
Q ss_pred EEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCC---eEEEEecCCCeEE
Q 021744 215 WNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDS---NRAHFSRDVTSLL 288 (308)
Q Consensus 215 wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---v~~~~s~d~~~l~ 288 (308)
||++.++.. ...+ .+|++++|+++ ..++++.|+++++.|-.++ +++..+++|.+. +.|+++.....++
T Consensus 170 ydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG----klL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 170 YDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG----KLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred EEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh----HHHHHhcccccceeeeeeeecccceeEE
Confidence 999999887 4444 48999999999 7888999999999999998 889999988764 3446766666666
Q ss_pred E-eeceEEEEee
Q 021744 289 G-SVSFIMFIGQ 299 (308)
Q Consensus 289 ~-s~s~~i~~~~ 299 (308)
+ |.+..+|+|.
T Consensus 244 sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 244 SGSEDGKVYFWD 255 (307)
T ss_pred eccCCceEEEEE
Confidence 4 3477777776
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=3.7e-30 Score=208.30 Aligned_cols=214 Identities=17% Similarity=0.250 Sum_probs=185.5
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG 148 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~ 148 (308)
.+.|.|+|+. ++|+..|.+.+|+.. .-......+.|...|.++.+++++.. ++|+.+|.|++|+..-. .++.+++
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--nVk~~~a 177 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--NVKIIQA 177 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh--hhHHhhH
Confidence 7899999999 999999999999973 22333456889999999999999987 99999999999998754 2445555
Q ss_pred cc-cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE-E-cCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744 149 HQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-I-SEGPWIFIGV-TNFVKAWNTQTNTDL 223 (308)
Q Consensus 149 h~-~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~-~-~~~~~l~~~~-d~~i~~wd~~~~~~~ 223 (308)
|. ..|++++|+|+...+++||.||+|+|||....+....+. |.-.+.++ + |...++++++ |+.|++||.++++++
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 54 999999999999999999999999999999888777777 77778877 4 5667788877 889999999999999
Q ss_pred -eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 224 -SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 224 -~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
++..|+..|..+.|+|+ +|++++.|..++++|+++. +.+.++.+|...+++ .|+|=..-|++++
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----kEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----KELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh----HHHHHhhcchhhheeeccccccccceeec
Confidence 89999999999999999 9999999999999999975 788999999999999 9999766565443
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.5e-30 Score=205.70 Aligned_cols=217 Identities=18% Similarity=0.301 Sum_probs=183.7
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC--c
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN--S 100 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~--~ 100 (308)
...|++||+|.+|++||.+++ .|+ ..+.+|..+ .+.|+ ..+ ++++.|.++++||+..... +
T Consensus 247 ~rviisGSSDsTvrvWDv~tg-----------e~l-~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~ 312 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNTG-----------EPL-NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITL 312 (499)
T ss_pred ceEEEecCCCceEEEEeccCC-----------chh-hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHH
Confidence 458999999999999999998 443 345678777 55554 457 9999999999999976542 2
Q ss_pred ccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744 101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~ 180 (308)
...+.+|...+..+.|... ..++++.|.+|++|++.+. +.++++.+|+..|.|+.+. ++++++||.|.+|++||++
T Consensus 313 rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 313 RRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred HHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccce-eeehhhhcccccceehhcc--CeEEEecCCCceEEEEecc
Confidence 2345778888888887654 5599999999999999999 8999999999999999885 7899999999999999999
Q ss_pred CCeEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCce---------e-eeeCCCCCEEEEEEeCCEEEEEcCC
Q 021744 181 SGQCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTD---------L-SLSGPVGQVYAMAVGNDLLFAGTQD 248 (308)
Q Consensus 181 ~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~---------~-~~~~~~~~v~~~~~~~~~l~~g~~d 248 (308)
.|.+++.++ |+.-+.|+-.+.+.+++|. ||+|++||+.++.. + .+..|++.|..+.|..-.+++++.|
T Consensus 389 ~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHd 468 (499)
T KOG0281|consen 389 CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHD 468 (499)
T ss_pred ccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCC
Confidence 999999998 8888999988888888876 99999999987642 2 5567899999999976688999999
Q ss_pred CeEEEEEcCCCC
Q 021744 249 GAILAWKFNVTT 260 (308)
Q Consensus 249 g~i~iwd~~~~~ 260 (308)
.+|.|||+..+.
T Consensus 469 dtILiWdFl~~~ 480 (499)
T KOG0281|consen 469 DTILIWDFLNGP 480 (499)
T ss_pred CeEEEEEcCCCC
Confidence 999999998764
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.1e-29 Score=190.35 Aligned_cols=224 Identities=14% Similarity=0.166 Sum_probs=186.0
Q ss_pred eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEe
Q 021744 71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQL 146 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~ 146 (308)
.++|++.... ++++.||++||||+.....+....+.|+..|.++.+.+..+. ++++.|++|++|+...+ +.+.++
T Consensus 65 dV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf 143 (311)
T KOG0277|consen 65 DVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTF 143 (311)
T ss_pred EeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEee
Confidence 7899987665 899999999999986555555566788889999999887643 88899999999999988 789999
Q ss_pred eCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCC-CeEEEEEe-CCCeeEEE-E--cCCCEEEEEc-CCcEEEEEcCC
Q 021744 147 EGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS-GQCAGVIN-LGGEVGCM-I--SEGPWIFIGV-TNFVKAWNTQT 219 (308)
Q Consensus 147 ~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~-~~~~v~~~-~--~~~~~l~~~~-d~~i~~wd~~~ 219 (308)
.||...|...+|+| ..+.++++|.|+++++||++. ++.+. +. |..++.|. + .+...+++|. |+.|+.||++.
T Consensus 144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 99999999999998 468899999999999999986 55555 55 66677665 3 3566777777 99999999998
Q ss_pred Ccee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--
Q 021744 220 NTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-- 291 (308)
Q Consensus 220 ~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-- 291 (308)
-... .+.+|.-.|+.+.|||. +|++++.|-+++|||...+. ..+.+...|...+.. .||+...-.++++
T Consensus 223 ~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d---s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gW 299 (311)
T KOG0277|consen 223 LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD---SAIETVDHHTEFVCGLDWSLFDPGQVASTGW 299 (311)
T ss_pred ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch---hhhhhhhccceEEeccccccccCceeeeccc
Confidence 6543 78999999999999998 99999999999999998663 667778889999999 9998654444443
Q ss_pred ceEEEEee
Q 021744 292 SFIMFIGQ 299 (308)
Q Consensus 292 s~~i~~~~ 299 (308)
+..+|++.
T Consensus 300 De~l~Vw~ 307 (311)
T KOG0277|consen 300 DELLYVWN 307 (311)
T ss_pred ccceeeec
Confidence 77777765
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=9.9e-28 Score=225.98 Aligned_cols=235 Identities=17% Similarity=0.203 Sum_probs=187.4
Q ss_pred ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC----Ccccc--cceeeeeeeeeeeecC-C-ceEEeeCCCeEE
Q 021744 64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK----NSNIN--NRAVIKTDILCRNWVQ-G-NCMYGEKCKFLH 132 (308)
Q Consensus 64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~----~~~~~--~~~~~~~~~~~~~~~~-~-~~~~g~~d~~i~ 132 (308)
..+|... +++|+|+|.+ |+|+.|++|+||++.... ..... ...+...+..+.|.+. + .+++++.|+.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 3456666 8999999999 999999999999985321 11000 1112234666777664 3 348899999999
Q ss_pred EEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE-E--cCCCEEEEEc
Q 021744 133 SWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM-I--SEGPWIFIGV 208 (308)
Q Consensus 133 iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~--~~~~~l~~~~ 208 (308)
+||+.++ +.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+++++.+..+.....+.++ + +++.++++|+
T Consensus 559 lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 559 VWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 9999988 78889999999999999996 7889999999999999999999998888866666665 2 3588888877
Q ss_pred -CCcEEEEEcCCCce-e-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCc--ccccceeccccCCCeEE-EEe
Q 021744 209 -TNFVKAWNTQTNTD-L-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTN--CFEPAASLKVHTDSNRA-HFS 281 (308)
Q Consensus 209 -d~~i~~wd~~~~~~-~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~-~~s 281 (308)
|+.|++||+++... . .+.+|...|.++.|.+. +|++++.|+.|++||++.... ...++..+.+|...+.. .|+
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s 717 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS 717 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc
Confidence 99999999987653 3 67899999999999866 999999999999999975321 12567788899999999 999
Q ss_pred cCCCeEEEee-ceEEEEee
Q 021744 282 RDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 282 ~d~~~l~~s~-s~~i~~~~ 299 (308)
|++.+|++++ +..++++.
T Consensus 718 ~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 718 VSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCCCEEEEEeCCCEEEEEE
Confidence 9999988655 66666655
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-28 Score=206.67 Aligned_cols=251 Identities=14% Similarity=0.176 Sum_probs=203.5
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
-+-+.++-..|.+.+||.++.. ....-.....|.+ +..|-+.-+- ++|+.|..||||+.++.+.+. ..
T Consensus 25 ePw~la~LynG~V~IWnyetqt-----mVksfeV~~~PvR-----a~kfiaRknWiv~GsDD~~IrVfnynt~ekV~-~F 93 (794)
T KOG0276|consen 25 EPWILAALYNGDVQIWNYETQT-----MVKSFEVSEVPVR-----AAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK-TF 93 (794)
T ss_pred CceEEEeeecCeeEEEecccce-----eeeeeeecccchh-----hheeeeccceEEEecCCceEEEEecccceeeE-Ee
Confidence 4568888899999999988750 0000001111111 3456566666 999999999999999887653 34
Q ss_pred ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCC
Q 021744 105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASG 182 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~ 182 (308)
..|...++++..+|.-.+ ++++.|-.|++||.+.+..+.++++||+.-|.+++|+| |.+.++|++-|++|++|.+.+.
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 567788999999999866 89999999999999988788999999999999999999 4588999999999999999999
Q ss_pred eEEEEEe-CCCeeEEEE----cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744 183 QCAGVIN-LGGEVGCMI----SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (308)
Q Consensus 183 ~~~~~~~-~~~~v~~~~----~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i 253 (308)
.+..+++ |+.-+.|+. .+..+|++|. |.+|++||..+.+++ ++.+|...|..+.|+|. ++++|++||+|+|
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvri 253 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRI 253 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEE
Confidence 9999998 778888883 3456899887 779999999999998 89999999999999999 9999999999999
Q ss_pred EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
|+..+- +...++.-.-..+++ +-.+.+..++.+.
T Consensus 254 Whs~Ty----~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 254 WNSKTY----KLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ecCcce----ehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 999885 666667666677777 6666555555444
No 47
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=8.9e-27 Score=205.14 Aligned_cols=254 Identities=11% Similarity=0.169 Sum_probs=182.5
Q ss_pred CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccc--eeEEec-CCCe-eeccCCCcEEEEECCCCCC-
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAA--AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKN- 99 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~--~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~- 99 (308)
++.+++++.+.....|+...+.. .+..-.-+....+..+.||.+. +++|+| ++.+ ++|+.|++|++||+.++..
T Consensus 32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~ 111 (493)
T PTZ00421 32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT 111 (493)
T ss_pred CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc
Confidence 35578888888888898654410 0000000011223446799888 899999 7878 9999999999999965421
Q ss_pred -----cccccceeeeeeeeeeeecCC-c-eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC
Q 021744 100 -----SNINNRAVIKTDILCRNWVQG-N-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172 (308)
Q Consensus 100 -----~~~~~~~~~~~~~~~~~~~~~-~-~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg 172 (308)
......+|...+..+.|+|.+ . +++++.|+.|+|||+.++ +.+..+.+|...|.+++|+|++.+|++++.|+
T Consensus 112 ~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 112 QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEECCCCEEEEecCCC
Confidence 112345677789999999975 3 488999999999999998 78888999999999999999999999999999
Q ss_pred cEEEEeCCCCeEEEEEe-CCCee--EEE-EcCCCEEE-EEc----CCcEEEEEcCCCce-e-eeeC-CCCCEEEEEEeCC
Q 021744 173 TVRVWDCASGQCAGVIN-LGGEV--GCM-ISEGPWIF-IGV----TNFVKAWNTQTNTD-L-SLSG-PVGQVYAMAVGND 240 (308)
Q Consensus 173 ~v~~wd~~~~~~~~~~~-~~~~v--~~~-~~~~~~l~-~~~----d~~i~~wd~~~~~~-~-~~~~-~~~~v~~~~~~~~ 240 (308)
+|++||+++++.+..+. |.... .++ .+++..++ +|. |+.|++||+++... . .... ....+....|+++
T Consensus 191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d 270 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDED 270 (493)
T ss_pred EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCC
Confidence 99999999999888877 43322 333 35555555 442 68999999987643 2 2222 2345666678887
Q ss_pred --EEEEEc-CCCeEEEEEcCCCCcccccceecc-ccCCCeEE-EEecCC
Q 021744 241 --LLFAGT-QDGAILAWKFNVTTNCFEPAASLK-VHTDSNRA-HFSRDV 284 (308)
Q Consensus 241 --~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~-~~s~d~ 284 (308)
+|++++ .|+.|++||+.++ +++.... .+..+... +|.|.-
T Consensus 271 ~~~L~lggkgDg~Iriwdl~~~----~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 271 TNLLYIGSKGEGNIRCFELMNE----RLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCEEEEEEeCCCeEEEEEeeCC----ceEEEeeccCCCCCcceEecccc
Confidence 666666 6999999999986 4444333 23445556 777754
No 48
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.6e-28 Score=199.00 Aligned_cols=253 Identities=17% Similarity=0.173 Sum_probs=201.3
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
....+|+| ..+.+++..++ .+.....+-.... ++.|-.||.. |.|...|.|+|+|.++ +.+...
T Consensus 40 ~d~aVt~S--~rvqly~~~~~-----------~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR~ 105 (487)
T KOG0310|consen 40 YDFAVTSS--VRVQLYSSVTR-----------SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILRQ 105 (487)
T ss_pred CceEEecc--cEEEEEecchh-----------hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHHH
Confidence 34455554 46777877665 2222111111222 6899999999 9999999999999544 445556
Q ss_pred cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCC
Q 021744 104 NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~ 180 (308)
...|..++....|+|.+.. ++|+.|+.+++||+.+. .....+.+|++.|.+.+|+|.. ..++|||+||+|++||++
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 7889999999999998854 88999999999999998 5566899999999999999854 578999999999999999
Q ss_pred CC-eEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744 181 SG-QCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (308)
Q Consensus 181 ~~-~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i 253 (308)
+. ..+.++.|+.++..+ .|.|.++++++.+.+++||+.++... .+..|...|+|+.+..+ .|++|+.|+.|++
T Consensus 185 ~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 185 SLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKV 264 (487)
T ss_pred cCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEE
Confidence 87 888899999999877 47889999999999999999966544 44559999999999987 9999999999999
Q ss_pred EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744 254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG 298 (308)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~ 298 (308)
||+.+- +.+..+. ..++|.+ +.+||++.++++. +..+.+.
T Consensus 265 fd~t~~----Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 265 FDTTNY----KVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred EEccce----EEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence 997764 6677665 4566766 9999999888776 4444433
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=216.76 Aligned_cols=226 Identities=19% Similarity=0.337 Sum_probs=189.7
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
++.++++||.|+++|+||..++ .....+.||.....++.-...+ ++|+.|.+|++|+++++..+...
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg------------~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~ 327 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTG------------ECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLL 327 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCC------------cEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEe
Confidence 3678999999999999998877 3345566888875556666667 99999999999999988766433
Q ss_pred cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC-
Q 021744 104 NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG- 182 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~- 182 (308)
.+|...|.++... .+..++|+.|+.|++||+.++ ++++++.+|...|.++.+.+. ..+++|+.|++|++||+++.
T Consensus 328 -~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 328 -RGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR 403 (537)
T ss_pred -ccccccEEEEEec-CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh
Confidence 3388889888887 446699999999999999999 899999999999999988765 89999999999999999999
Q ss_pred eEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeC-CCCCEEEEEEeCCEEEEEcCCCeEEEEEcCC
Q 021744 183 QCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG-PVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 183 ~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~ 258 (308)
+++.++. +..-+..+...+++|+++. |++|++||..++++. .+.+ |...|.++++....+++++.||.+++||+++
T Consensus 404 ~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 404 KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEeccc
Confidence 9999998 5555666677888999877 999999999999988 6666 6688999998844888999999999999999
Q ss_pred CCcccccceecc
Q 021744 259 TTNCFEPAASLK 270 (308)
Q Consensus 259 ~~~~~~~~~~~~ 270 (308)
+ ++...+-
T Consensus 484 ~----~~~~~l~ 491 (537)
T KOG0274|consen 484 G----TLIRTLL 491 (537)
T ss_pred C----chhhhhh
Confidence 7 5555553
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.5e-28 Score=210.97 Aligned_cols=229 Identities=14% Similarity=0.155 Sum_probs=188.6
Q ss_pred ccccc--eeEEecCCCe-eeccCCCcEEEEECCC--------------------------------CC------------
Q 021744 66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGN--------------------------------SK------------ 98 (308)
Q Consensus 66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~--------------------------------~~------------ 98 (308)
.|.++ ++.||+||+| |+|+.|+.||||.+.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 78888 9999999999 9999999999998843 00
Q ss_pred ---------------CcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CC
Q 021744 99 ---------------NSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GS 162 (308)
Q Consensus 99 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~ 162 (308)
.+.....+|...|..+.|+.++.+++++.|++||||++... ++++.|. |.+-|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~-~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK-ECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc-ceeeEEe-cCCeeEEEEecccCC
Confidence 00011246667788889999988899999999999999988 8898887 999999999999 67
Q ss_pred CEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee---eeeCC------CC
Q 021744 163 DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL---SLSGP------VG 230 (308)
Q Consensus 163 ~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~---~~~~~------~~ 230 (308)
+++++|+-|+.|+||++...+.+.-...+.-|+++ .|+|+..++|+ +|.+++|+....+.+ .+.-+ ..
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 99999999999999999988877666666777765 59999999998 999999999887655 11111 22
Q ss_pred CEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCC---CeEEEEecCCCeEEEee-ceEEEEeec
Q 021744 231 QVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD---SNRAHFSRDVTSLLGSV-SFIMFIGQN 300 (308)
Q Consensus 231 ~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~v~~~~s~d~~~l~~s~-s~~i~~~~~ 300 (308)
.|+.+.|.|. .+++.+.|..|+|||.+.. .++..++++.. .+.+.|+.||+++++++ +..+|+|.+
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~----~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK----DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccch----hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 7999999876 6888899999999999876 77777776543 45669999999999665 888898885
No 51
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5.6e-27 Score=207.60 Aligned_cols=237 Identities=10% Similarity=0.089 Sum_probs=171.3
Q ss_pred ecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC-CCe-eeccCCCcEEEEECCCCCC-c------
Q 021744 32 DTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN-TWG-RNNNFNNHSNNYRAGNSKN-S------ 100 (308)
Q Consensus 32 ~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~-g~~-~s~~~d~~i~vwd~~~~~~-~------ 100 (308)
|+.++.+++|+..+. +....+.+|... +++|+|+ +.+ |+|+.|++|+|||+.++.. .
T Consensus 50 GG~~gvI~L~~~~r~------------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p 117 (568)
T PTZ00420 50 GGLIGAIRLENQMRK------------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP 117 (568)
T ss_pred CCceeEEEeeecCCC------------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc
Confidence 445667777765543 223346788877 8999997 667 9999999999999975421 1
Q ss_pred ccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744 101 NINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (308)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd 178 (308)
.....+|...+..+.|+|++.. ++++.|+.|++||+.++ +.+..+. |...|.+++|+|++.+|++++.|++|++||
T Consensus 118 ~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 118 QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence 1123557777999999998854 67899999999999988 5666665 668899999999999999999999999999
Q ss_pred CCCCeEEEEEe-CCCee--EEEE-----cCCCEEEE-EcCC----cEEEEEcCC-Cceee---eeCCCCCEEEEEEeCC-
Q 021744 179 CASGQCAGVIN-LGGEV--GCMI-----SEGPWIFI-GVTN----FVKAWNTQT-NTDLS---LSGPVGQVYAMAVGND- 240 (308)
Q Consensus 179 ~~~~~~~~~~~-~~~~v--~~~~-----~~~~~l~~-~~d~----~i~~wd~~~-~~~~~---~~~~~~~v~~~~~~~~- 240 (308)
+++++.+.++. |.+.+ .+++ +++.+|++ |.++ +|++||++. .+++. +..+.+.+......++
T Consensus 196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999988887 54432 2222 57777776 4453 799999995 44442 2233333333333333
Q ss_pred -EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCC
Q 021744 241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVT 285 (308)
Q Consensus 241 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~ 285 (308)
++++|+.|+.|++|++..+.. ..+..+. +..+... +|.|...
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~--~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSI--RKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcE--Eeecccc-cCCCccceEEccccc
Confidence 888999999999999987521 3333333 5667777 8988754
No 52
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.5e-27 Score=185.21 Aligned_cols=243 Identities=12% Similarity=0.156 Sum_probs=193.6
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
..+++.+|-|++||+|+++..+ ...+.....|.++ +++|+.||.. ++|+.|+.+++||+.++|..
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g----------~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-- 107 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSG----------QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-- 107 (347)
T ss_pred CceEEecccCCceEEEEEecCC----------cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee--
Confidence 4678899999999999988631 3344445567777 8999999999 99999999999999999765
Q ss_pred ccceeeeeeeeeeeecCCc--e-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 103 NNRAVIKTDILCRNWVQGN--C-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~--~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
....|...+.+|.|.+... | ++|+.|++|+.||++.. .++.++. -.+.++++..- ..+++.+..++.|.+|++
T Consensus 108 ~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 108 QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNL 183 (347)
T ss_pred eeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEc
Confidence 6778889999999988775 4 89999999999999988 6777776 45677777664 357888889999999999
Q ss_pred CCCeEEEEE-e--CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc---eeeeeCCC---------CCEEEEEEeCC-
Q 021744 180 ASGQCAGVI-N--LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT---DLSLSGPV---------GQVYAMAVGND- 240 (308)
Q Consensus 180 ~~~~~~~~~-~--~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~---~~~~~~~~---------~~v~~~~~~~~- 240 (308)
+++...... + ..-.++|+ +.+....+.|+ +|.+.+..+.... ..+++.|. ..|++|+|+|.
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h 263 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH 263 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence 875433221 1 33344554 56666667777 9999888887642 22566665 26889999999
Q ss_pred -EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744 241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL 288 (308)
Q Consensus 241 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~ 288 (308)
.|++.+.||++.+||-... ..+.+.+.|..+|.+ +|+.+|.+++
T Consensus 264 gtlvTaGsDGtf~FWDkdar----~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDAR----TKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred ceEEEecCCceEEEecchhh----hhhhccCcCCCccceeEecCCCCEEE
Confidence 9999999999999998876 678888899999999 9999999987
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.9e-27 Score=207.17 Aligned_cols=256 Identities=14% Similarity=0.158 Sum_probs=207.1
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
.+-|.++--.|.|++||..-+ .+-..+..|.++ .+.|+|++.. +||+.|.+|+||+..+.+.+ .
T Consensus 21 rPwILtslHsG~IQlWDYRM~------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-f 87 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMG------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-F 87 (1202)
T ss_pred CCEEEEeecCceeeeehhhhh------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh-h
Confidence 467888889999999998876 334446678888 8999999999 99999999999999877655 3
Q ss_pred ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
.+.+|-..++.+.|++.-.- ++++.|.+|+||+..++ +.+..+.||..-|.|..|+|....++|+|-|-+|++||+..
T Consensus 88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence 56788889999999987655 89999999999999999 89999999999999999999999999999999999999863
Q ss_pred CeEEE---------------------------EE--e-CCCeeE--EEEcCCCEEEEEc-CCcEEEEEcCCCcee---ee
Q 021744 182 GQCAG---------------------------VI--N-LGGEVG--CMISEGPWIFIGV-TNFVKAWNTQTNTDL---SL 225 (308)
Q Consensus 182 ~~~~~---------------------------~~--~-~~~~v~--~~~~~~~~l~~~~-d~~i~~wd~~~~~~~---~~ 225 (308)
-+... ++ . |..-+. ++.|.-.++++|+ |..|++|.+...+.- +.
T Consensus 167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc 246 (1202)
T KOG0292|consen 167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC 246 (1202)
T ss_pred hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhh
Confidence 11100 00 0 111122 1234456788877 789999998765433 67
Q ss_pred eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEee
Q 021744 226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQ 299 (308)
Q Consensus 226 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~ 299 (308)
.+|.+.|.++.|+|. ++++.++|+.|++||+... ..++++.......++ +-.|...+++++. ...+|...
T Consensus 247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR----t~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR----TSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred hcccCCcceEEecCccceeEecCCCccEEEEecccc----cceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 899999999999996 9999999999999999987 778888877777788 8899988887776 34444444
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3e-26 Score=190.02 Aligned_cols=231 Identities=19% Similarity=0.303 Sum_probs=192.5
Q ss_pred ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC
Q 021744 64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG 139 (308)
Q Consensus 64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~ 139 (308)
+.+|... +++|+|+++. ++++.|+.|++|++.+++.. .....|...+..+.+.+++.. ++++.++.|++|++.++
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 4467666 8999999999 99999999999999766532 233445555778899998854 88889999999999987
Q ss_pred ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEE
Q 021744 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAW 215 (308)
Q Consensus 140 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~w 215 (308)
+.+..+..|...+.++.|+++++++++++.|+.+.+||+++++....+. +...+.++ .+++++++++. ++.|++|
T Consensus 84 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 84 -ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred -cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 6788888999999999999998888998889999999999988888887 66667766 35678888888 9999999
Q ss_pred EcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 216 NTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 216 d~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
|+++++.. .+..|...+.++.|+|+ .+++++.|+.|++||++.+ +.+..+..|...+.. .|+|++.+++++.
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG----KCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC----ceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 99987766 67788889999999999 8888888999999999986 667777788889999 9999988887665
Q ss_pred -ceEEEEeec
Q 021744 292 -SFIMFIGQN 300 (308)
Q Consensus 292 -s~~i~~~~~ 300 (308)
+..++++..
T Consensus 239 ~~~~i~i~~~ 248 (289)
T cd00200 239 EDGTIRVWDL 248 (289)
T ss_pred CCCcEEEEEc
Confidence 555655553
No 55
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7.8e-27 Score=183.01 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=179.0
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH 149 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h 149 (308)
.+.|+|.++. +.+++||++++||+...+.. ....+..++..|+|.+....++|+-||.|+.+|+.++. ...+-.|
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~--~~~igth 93 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN--EDQIGTH 93 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhh--hheecCCceeeeeccCCceEEEeccCceEEEEEecCCc--ceeeccC
Confidence 6899998888 88899999999999766333 44567778999999998888999999999999999883 3345669
Q ss_pred ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCc-------
Q 021744 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNT------- 221 (308)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~------- 221 (308)
..+|.++.+.+....+++||.|++|++||.+....+..+..+..+.++...+..|++|. +..+.+||+++..
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~re 173 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRE 173 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhcc
Confidence 99999999999888999999999999999998777778888888889987777777755 8899999998641
Q ss_pred ------------------------------------------eeeeeCCC---------CCEEEEEEeCC--EEEEEcCC
Q 021744 222 ------------------------------------------DLSLSGPV---------GQVYAMAVGND--LLFAGTQD 248 (308)
Q Consensus 222 ------------------------------------------~~~~~~~~---------~~v~~~~~~~~--~l~~g~~d 248 (308)
...++.|. .+|++|+|+|- .|++|+.|
T Consensus 174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 00233342 28999999998 99999999
Q ss_pred CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
|.|.+||+.+. +.+..+......|.. +|+.||..|+.+.
T Consensus 254 G~V~~Wd~~~r----Krl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 254 GIVNIWDLFNR----KRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceEEEccCcch----hhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 99999999997 667888877777888 9999999999655
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9.5e-28 Score=189.63 Aligned_cols=256 Identities=15% Similarity=0.168 Sum_probs=208.0
Q ss_pred CCCceEEecCCCeEEEeecCCCC-CCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCN-RFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~-~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~ 100 (308)
.+.++++||.||-|.|||.-++. |....|. ....+.-+..+ |+.|+.|... |+|+.||.|++|.+.+++.+
T Consensus 224 DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ-----Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 224 DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ-----AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred CCceEeeccccceeeeehhccchhhhhhhhh-----hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH
Confidence 37799999999999999988772 1111121 11223344555 8999999999 99999999999999999999
Q ss_pred ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
....+.|.+.+.++.|+.++.. ++++.|.++++.-++++ +.+++++||...|+...|.++|..+++++.||+|++|+.
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~ 377 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHG 377 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecC
Confidence 8888999999999999999966 89999999999999999 899999999999999999999999999999999999999
Q ss_pred CCCeEEEEEe---CCCeeEEE--Ec-CCCEEEEEc-CCcEEEEEcCCCceeeeeC---CCCCEEEEEEeCC--EEEEEcC
Q 021744 180 ASGQCAGVIN---LGGEVGCM--IS-EGPWIFIGV-TNFVKAWNTQTNTDLSLSG---PVGQVYAMAVGND--LLFAGTQ 247 (308)
Q Consensus 180 ~~~~~~~~~~---~~~~v~~~--~~-~~~~l~~~~-d~~i~~wd~~~~~~~~~~~---~~~~v~~~~~~~~--~l~~g~~ 247 (308)
++.+++.+++ .+.++..+ .| +...++++. .+++.+.++...-...+.. ..+...+.+.+|. ++.+.++
T Consensus 378 KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE 457 (508)
T KOG0275|consen 378 KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE 457 (508)
T ss_pred cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence 9999999998 33455555 33 345566665 8899999987544444432 2345667778888 8999999
Q ss_pred CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEe
Q 021744 248 DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGS 290 (308)
Q Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s 290 (308)
|+.++.|.+.++ .+..++..|...+-. +-.|....+++-
T Consensus 458 D~vlYCF~~~sG----~LE~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 458 DGVLYCFSVLSG----KLERTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred CcEEEEEEeecC----ceeeeeecccccccccccCcccchhhhh
Confidence 999999999998 667778888877766 778877666643
No 57
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.8e-26 Score=175.15 Aligned_cols=227 Identities=14% Similarity=0.238 Sum_probs=178.1
Q ss_pred Cccccccc--eeEEecC-CCe-eeccCCCcEEEEECCCCCCcc---cccceeeeeeeeeeeecCCce-EEeeCCCeEEEE
Q 021744 63 AATANGAA--AKRFANN-TWG-RNNNFNNHSNNYRAGNSKNSN---INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSW 134 (308)
Q Consensus 63 ~~~gh~~~--~i~~s~~-g~~-~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iw 134 (308)
.+.+|.+. .++++|- |.. ||++.|+.||+|+...+.... ..-..|+..++.++++|.|++ ++++.|.++.||
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 45677775 8999999 887 999999999999997543221 122468888999999999988 889999999999
Q ss_pred EcCCC-ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC---eEEEEEe-CCCeeEEE-E-cCCCEEEEE
Q 021744 135 TVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG---QCAGVIN-LGGEVGCM-I-SEGPWIFIG 207 (308)
Q Consensus 135 d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~---~~~~~~~-~~~~v~~~-~-~~~~~l~~~ 207 (308)
.-..+ .+.+..++||+..|.+++|+++|++||+|++|++|-+|.+..+ ++...++ |...+..+ + |...+|+++
T Consensus 89 ~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred ecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 87644 3778899999999999999999999999999999999998753 5566666 55566544 3 667788877
Q ss_pred c-CCcEEEEEcCCC---cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744 208 V-TNFVKAWNTQTN---TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H 279 (308)
Q Consensus 208 ~-d~~i~~wd~~~~---~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~ 279 (308)
+ |++|++|+-..+ ++. ++.+|...|++++|++. .|+++++|++|+||.+.+. --..|...+.. .
T Consensus 169 SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 169 SYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------LSGMHSRALYDVP 240 (312)
T ss_pred ccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--------cchhcccceEeee
Confidence 6 999999987633 333 89999999999999997 9999999999999987643 01136677776 8
Q ss_pred EecCCCeEE-EeeceEEEEee
Q 021744 280 FSRDVTSLL-GSVSFIMFIGQ 299 (308)
Q Consensus 280 ~s~d~~~l~-~s~s~~i~~~~ 299 (308)
|. ++ .|+ ++++..|.+.+
T Consensus 241 W~-~~-~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 241 WD-NG-VIASGGGDDAIRLFK 259 (312)
T ss_pred ec-cc-ceEeccCCCEEEEEE
Confidence 87 44 444 44454444443
No 58
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.5e-26 Score=190.06 Aligned_cols=263 Identities=14% Similarity=0.160 Sum_probs=205.4
Q ss_pred CCceEEecCCCeEEEeecCCCCCC--CCCc---cc-ccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCC
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRF--PCPY---LH-RELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGN 96 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~--~~~~---~~-~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~ 96 (308)
+.+..+++.|++|--|++.++... ..+- +. ...|...+..+|... ++++++||++ |+|+.|..|.||+..+
T Consensus 154 ~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t 233 (479)
T KOG0299|consen 154 DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT 233 (479)
T ss_pred ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcc
Confidence 567899999999999999887432 1111 11 111222221377666 8999999999 9999999999999998
Q ss_pred CCCcccccceeeeeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEE
Q 021744 97 SKNSNINNRAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVR 175 (308)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~ 175 (308)
.+.... ..+|.+.|..++|-... ..++++.|..|++|+++.. ..+.++.+|++.|.++.....++.+..|+.|++++
T Consensus 234 ~ehv~~-~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~r 311 (479)
T KOG0299|consen 234 LEHVKV-FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVR 311 (479)
T ss_pred cchhhc-ccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCccceeeechhcccceEEeccccceeE
Confidence 877643 57788888888887665 4589999999999999988 78899999999999999887777777778999999
Q ss_pred EEeCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-e-eeCC-----------CCCEEEEEEeCC
Q 021744 176 VWDCASGQCAGVINLGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-S-LSGP-----------VGQVYAMAVGND 240 (308)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~~~-----------~~~v~~~~~~~~ 240 (308)
+|++.....+.-..+...+.|+ +.+...+++|+ +|.|.+|++.+.+++ + -.+| +.+|++++..|.
T Consensus 312 lwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~ 391 (479)
T KOG0299|consen 312 LWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG 391 (479)
T ss_pred EEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence 9999655444444466667666 56777777777 899999999888765 2 1122 238999999988
Q ss_pred --EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 241 --~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
++++|+.+|.|++|-+..+...+.++..+. -.+.|+. +|+++|+.++++.
T Consensus 392 sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 392 SDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred CceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 999999999999999998854456666666 5778999 9999999877655
No 59
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-26 Score=197.28 Aligned_cols=223 Identities=14% Similarity=0.182 Sum_probs=191.7
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG 148 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~ 148 (308)
++.++|.... +++-+.|.|.||+.++..... .......+++.+.|-.-.+- ++|+.|..|++|+.++. +.++.|..
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetqtmVk-sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~-ekV~~FeA 95 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQTMVK-SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG-EKVKTFEA 95 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEecccceeee-eeeecccchhhheeeeccceEEEecCCceEEEEecccc-eeeEEeec
Confidence 7999999999 889999999999998764432 33444556888888877766 89999999999999999 89999999
Q ss_pred cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC-eEEEEEe-CCCeeEEEE--c-CCCEEEEEc-CCcEEEEEcCCCce
Q 021744 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN-LGGEVGCMI--S-EGPWIFIGV-TNFVKAWNTQTNTD 222 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~-~~~~~~~-~~~~v~~~~--~-~~~~l~~~~-d~~i~~wd~~~~~~ 222 (308)
|.+-|++++.+|...+++|+|.|-+|++||.+.+ .+.+++. |..-+.++. | |.+.+++++ |++|++|.+.+..+
T Consensus 96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~ 175 (794)
T KOG0276|consen 96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP 175 (794)
T ss_pred cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC
Confidence 9999999999999999999999999999999875 6677777 666777664 3 466788777 99999999998877
Q ss_pred e-eeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEE
Q 021744 223 L-SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIM 295 (308)
Q Consensus 223 ~-~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i 295 (308)
. ++.+|...|+|+.+-+. +|++|++|..|+|||..+. .+++++++|..-|+. .|.|.=..+++++ +.++
T Consensus 176 nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 176 NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTV 251 (794)
T ss_pred ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEecCCCcEEEEecCCccE
Confidence 6 89999999999999764 9999999999999999997 999999999999999 9999877777554 6666
Q ss_pred EEee
Q 021744 296 FIGQ 299 (308)
Q Consensus 296 ~~~~ 299 (308)
-+|.
T Consensus 252 riWh 255 (794)
T KOG0276|consen 252 RIWN 255 (794)
T ss_pred EEec
Confidence 6654
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=4.8e-27 Score=180.80 Aligned_cols=257 Identities=11% Similarity=0.070 Sum_probs=198.4
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
-|.+|.|++.|.+..||-..++ .....+.||+++ ++.+.-+.++ ++|+.|.++++||+++|+.+
T Consensus 21 eGDLlFscaKD~~~~vw~s~nG------------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l- 87 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSLNG------------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL- 87 (327)
T ss_pred CCcEEEEecCCCCceEEEecCC------------ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE-
Confidence 4678999999999999998877 234568899999 8888888889 99999999999999999876
Q ss_pred cccceeeeeeeeeeeecCCceEEe------eCCCeEEEEEcCCC------ceeeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744 102 INNRAVIKTDILCRNWVQGNCMYG------EKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGS 169 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~g------~~d~~i~iwd~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 169 (308)
........+..+.|+++|+.+.. +..+.|.++|++.. +++...+..+.+.++.+-|.|-++.|++|.
T Consensus 88 -a~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 88 -ATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred -EEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 33444556899999999977433 33478899999832 256777788899999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEE-e-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EE
Q 021744 170 KDETVRVWDCASGQCAGVI-N-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL 242 (308)
Q Consensus 170 ~dg~v~~wd~~~~~~~~~~-~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l 242 (308)
+||.|..||+++++.+... + |...++.+ +++..++++++ |.+-++||.++.+.+.......+|++.+++|. .+
T Consensus 167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHV 246 (327)
T ss_pred CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceE
Confidence 9999999999998655444 3 66777766 57888999887 99999999999998855556789999999997 44
Q ss_pred EEE-cCCC-eEEEEEcCCCCc--------ccccceeccccCCCeEE-EEecCCCeEEEee-ceEE
Q 021744 243 FAG-TQDG-AILAWKFNVTTN--------CFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIM 295 (308)
Q Consensus 243 ~~g-~~dg-~i~iwd~~~~~~--------~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i 295 (308)
+.| +++- .|.-=+.+.++- ..+.+..+++|-++|++ +|+|+|+...+++ +..+
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 444 4331 111111121110 01456677899999999 9999998777655 4433
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-26 Score=196.87 Aligned_cols=254 Identities=15% Similarity=0.180 Sum_probs=200.4
Q ss_pred eEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccc
Q 021744 29 STADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNR 105 (308)
Q Consensus 29 ~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~ 105 (308)
.+..+....|++|+..++. .......++.. ++.++++|.+ |.|..+|.|.|||.+..+.+.....
T Consensus 190 ~laValg~~vylW~~~s~~------------v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSGS------------VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred eEEEEecceEEEEecCCCc------------eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 3444557799999998881 11111111222 7999999999 9999999999999977766544444
Q ss_pred eeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE
Q 021744 106 AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (308)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~ 185 (308)
.|...+-++++. .....+|+.|+.|..+|++........+.+|...|..++|++|+.++++|+.|+.+.|||....+++
T Consensus 258 ~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 258 SHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 467777777776 4456889999999999999884445558899999999999999999999999999999999777777
Q ss_pred EEEe-CCCeeEEE--Ec-CCCEEEEEc---CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEE--EcCCCeEEEE
Q 021744 186 GVIN-LGGEVGCM--IS-EGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA--GTQDGAILAW 254 (308)
Q Consensus 186 ~~~~-~~~~v~~~--~~-~~~~l~~~~---d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~--g~~dg~i~iw 254 (308)
..+. |...+.++ +| ...+||+|. |++|++||..+++.+........|.+|.|++. -|++ |..++.|.||
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw 416 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLW 416 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence 6665 88888877 33 366788754 89999999999999965556789999999998 3433 5567889999
Q ss_pred EcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-c--eEEEEee
Q 021744 255 KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-S--FIMFIGQ 299 (308)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s--~~i~~~~ 299 (308)
++.+. +++..+.+|...|.. +++|||..+++++ + +.+|...
T Consensus 417 ~~ps~----~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 417 KYPSM----KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred ecccc----ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 99995 889999999999999 9999999998554 4 4444433
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-27 Score=181.96 Aligned_cols=221 Identities=15% Similarity=0.173 Sum_probs=185.1
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
..+.|+++.|=+-++||+-++ ..+.....-|--.+++|+.|.++ ++|+.++.+||+|++..+......
T Consensus 71 a~~aasaaadftakvw~a~tg-----------delhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTG-----------DELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI 139 (334)
T ss_pred hhhhhhhcccchhhhhhhhhh-----------hhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh
Confidence 356788999999999998887 12222112222227999999999 999999999999998887776677
Q ss_pred ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe
Q 021744 105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~ 183 (308)
.+|...++.+.|.....+ ++...|++||+||.+++ +.++++. -+.+|+++.++++|++|.+ ...+.|++||..+..
T Consensus 140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFG 216 (334)
T ss_pred cCCCCcceeEEEeccCceEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEecccccc
Confidence 889999999999988877 77789999999999999 7777777 5689999999999986655 456789999999999
Q ss_pred EEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-e-eeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744 184 CAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-S-LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (308)
Q Consensus 184 ~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~ 256 (308)
.++.++.+..+.+. .|+...+++|. |..++.||..+++.+ . .++|.++|.|+.|+|+ ..++|++||+|++|..
T Consensus 217 ~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 217 LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 99999988877755 57777777776 899999999999988 4 3899999999999999 8999999999999998
Q ss_pred CCCC
Q 021744 257 NVTT 260 (308)
Q Consensus 257 ~~~~ 260 (308)
..++
T Consensus 297 ~~~~ 300 (334)
T KOG0278|consen 297 TPGK 300 (334)
T ss_pred cCCC
Confidence 7753
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-26 Score=204.35 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=203.7
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG 148 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~ 148 (308)
.++|+|.... .++-..|.|++||..-+..+ .....|.++|+.+.|+|...+ ++|+.|-.|++|+..+. +++.++.|
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli-~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-rclftL~G 91 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLI-DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-RCLFTLLG 91 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHH-hhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc-eehhhhcc
Confidence 6899999999 99999999999999655333 234568888999999999966 99999999999999998 89999999
Q ss_pred cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc---
Q 021744 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT--- 221 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~--- 221 (308)
|-+-|+.+.|++.-.+++|+|.|-+|+||+..+.+++..+. |..-+.|. .|...++++++ |.+|++||+..-.
T Consensus 92 HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 92 HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 99999999999999999999999999999999999999998 77777776 46688888887 9999999985210
Q ss_pred -------------------------e--eeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744 222 -------------------------D--LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH 272 (308)
Q Consensus 222 -------------------------~--~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 272 (308)
. ..+.+|...|+-++|+|. ++++|++|+.|++|.+...+. -.+.+..+|
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--WEvDtcrgH 249 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTCRGH 249 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc--eeehhhhcc
Confidence 1 146689999999999998 999999999999999987654 456778899
Q ss_pred CCCeEE-EEecCCCeEEEee---ceEEEEeecCceeEEeC
Q 021744 273 TDSNRA-HFSRDVTSLLGSV---SFIMFIGQNNKGVVCYR 308 (308)
Q Consensus 273 ~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~~~~~~~~ 308 (308)
.+.|++ -|.|...++++.+ ++.+|-+.....+.|||
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 999999 9999988888776 78888888888999997
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=6.1e-26 Score=196.54 Aligned_cols=260 Identities=15% Similarity=0.124 Sum_probs=211.2
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
+.++.++..+.+++|+..+.. | ......+ -. +..|-|.+++ ++|...|.+.++|+.....+. ..
T Consensus 385 ~~~~~Sga~~SikiWn~~t~k---c--------iRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E-ti 450 (888)
T KOG0306|consen 385 SILLASGAGESIKIWNRDTLK---C--------IRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVE-TI 450 (888)
T ss_pred ceeeeecCCCcEEEEEccCcc---e--------eEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhh-hh
Confidence 344444557899999988651 1 0000001 12 5788899999 999999999999998776553 44
Q ss_pred ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC-----Cce-ee------eEeeCcccceEEEEEeCCCCEEEEeeCC
Q 021744 105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD-----GFK-LL------TQLEGHQKVVSGITLPSGSDKLYSGSKD 171 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~-----~~~-~~------~~~~~h~~~v~~~~~~~~~~~l~s~s~d 171 (308)
..|...+..+...|++.. ++|+.|.+|++||..- +.+ .. ++++ -++.|.|++++||+++|+.+--|
T Consensus 451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLd 529 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLD 529 (888)
T ss_pred hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEecc
Confidence 589999999999999965 9999999999999641 111 11 1222 35789999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEE
Q 021744 172 ETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFA 244 (308)
Q Consensus 172 g~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~ 244 (308)
.+|++|-+.+-+....+. |.-|+.|+ +++.+++++|+ |..|++|-+.-|.+. .+.+|.+.|.++.|.|. .+++
T Consensus 530 nTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 530 NTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred CeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE
Confidence 999999999988766665 88899987 68999999988 999999999999998 89999999999999999 8999
Q ss_pred EcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEeecCceeE
Q 021744 245 GTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNNKGVV 305 (308)
Q Consensus 245 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~~~~~ 305 (308)
++.|+.|+-||-..- +.++.+.+|...|++ +.+|+|.++++++ +..|-+|...+..+
T Consensus 610 ~gKD~kvKqWDg~kF----e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKF----EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred ecCcceEEeechhhh----hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 999999999999884 899999999999999 9999999999766 56676666555443
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=4.8e-27 Score=190.59 Aligned_cols=246 Identities=13% Similarity=0.185 Sum_probs=195.8
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
..++|++.|..|++|+..... ......+.|..++ .+.|.+++.+ ++++.|+.+++|+++..+... .
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k----------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~-T 256 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEK----------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH-T 256 (459)
T ss_pred chhhhcchhhhhhhhhcccch----------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh-h
Confidence 579999999999999977651 1233344555555 7999999999 999999999999998776543 4
Q ss_pred cceeeeeeeeeeeecCCc-eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744 104 NRAVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~ 182 (308)
+.+|...+.++.|..... .++|+.|.+|++||+... .+.+++.. ...+..+..+ ...++||..|++|++||+++.
T Consensus 257 LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 257 LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-YCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred hcccccceeeehhhccccceeeccccchhhhhhhhhh-heeccccc-cccccceEec--ceeeeecccccceEEEeccCC
Confidence 556999999999988876 599999999999999987 56555442 3445556555 557899999999999999999
Q ss_pred eEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCC----CCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744 183 QCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGP----VGQVYAMAVGND--LLFAGTQDGAIL 252 (308)
Q Consensus 183 ~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~----~~~v~~~~~~~~--~l~~g~~dg~i~ 252 (308)
.+.......+.++++ ..++..+.+++ |.++.+.|+++.+.. .+.+. ....+.+.|||+ |+++|+.||.|+
T Consensus 333 ~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 333 DKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred ceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEE
Confidence 999999988899887 46777777666 999999999998876 33321 234788999999 999999999999
Q ss_pred EEEcCCCCcccccceeccccCC--CeEE-EEecCCCeEEEee
Q 021744 253 AWKFNVTTNCFEPAASLKVHTD--SNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~~~~--~v~~-~~s~d~~~l~~s~ 291 (308)
||++.++ ++...+..... .|.+ +|+|.|..|+++.
T Consensus 413 iW~v~tg----KlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 413 IWSVFTG----KLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred EEEccCc----eEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 9999998 55555553333 5888 9999999998654
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=7.3e-26 Score=182.00 Aligned_cols=221 Identities=14% Similarity=0.196 Sum_probs=175.2
Q ss_pred ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC------
Q 021744 28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK------ 98 (308)
Q Consensus 28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~------ 98 (308)
.++++|.|.++++|....+.-. .......+||... +++..++|.. ++|+.|.+|+||+.++..
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~--------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~ 232 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENK--------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELES 232 (423)
T ss_pred eEEEecCCceEEEEEecCchhh--------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccc
Confidence 5999999999999987765110 1111222399988 8999999999 999999999999942110
Q ss_pred ------------------CcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC
Q 021744 99 ------------------NSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS 160 (308)
Q Consensus 99 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (308)
.+.....+|...|..+.|++.+...+++.|.+|+.||+.++ ..+.++.+ ...+.+++++|
T Consensus 233 ~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg-~~~~~~~~-~ksl~~i~~~~ 310 (423)
T KOG0313|consen 233 SSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG-GLKSTLTT-NKSLNCISYSP 310 (423)
T ss_pred cchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc-cceeeeec-CcceeEeeccc
Confidence 11123467888899999999778899999999999999999 66666664 57899999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCe---EEEEEe-CCCeeEEE--EcCCCE-EEEEc-CCcEEEEEcCCCc-ee-eeeCCCC
Q 021744 161 GSDKLYSGSKDETVRVWDCASGQ---CAGVIN-LGGEVGCM--ISEGPW-IFIGV-TNFVKAWNTQTNT-DL-SLSGPVG 230 (308)
Q Consensus 161 ~~~~l~s~s~dg~v~~wd~~~~~---~~~~~~-~~~~v~~~--~~~~~~-l~~~~-d~~i~~wd~~~~~-~~-~~~~~~~ 230 (308)
...+|++|+.|..+++||.+++. ..+++. |..-+..+ +|.+.+ |++++ |+++++||+|+.. ++ .+.+|.+
T Consensus 311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D 390 (423)
T KOG0313|consen 311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND 390 (423)
T ss_pred ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence 99999999999999999999753 223333 77777666 355554 44565 9999999999876 44 8999999
Q ss_pred CEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744 231 QVYAMAVGND-LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 231 ~v~~~~~~~~-~l~~g~~dg~i~iwd~~~ 258 (308)
.|.++.|... .+++|+.|.+|+|+....
T Consensus 391 Kvl~vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 391 KVLSVDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred eEEEEeccCCceEEeccCcceEEEecccc
Confidence 9999999988 999999999999997554
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9e-27 Score=184.12 Aligned_cols=223 Identities=15% Similarity=0.175 Sum_probs=186.4
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCccc-------ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCce
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI-------NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK 141 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~ 141 (308)
|..|+|||++ ++|+-||-|.+|+..+++.... ....+...+.++.|+.+... ++|+.||.|++|.+.++ +
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG-~ 296 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG-Q 296 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc-h
Confidence 7899999999 9999999999999988864322 22345566999999999877 89999999999999999 8
Q ss_pred eeeEee-CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEE
Q 021744 142 LLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWN 216 (308)
Q Consensus 142 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd 216 (308)
+++.|. .|+..|+++.|+.|+..+++++.|.++++.-+++|++++.+. |..-+... .++|..+++++ ||+|++|+
T Consensus 297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWH 376 (508)
T ss_pred HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEec
Confidence 888887 899999999999999999999999999999999999999998 55555543 57899888765 99999999
Q ss_pred cCCCcee-eee--CCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceecc----ccCCCeEEEEecCCCe
Q 021744 217 TQTNTDL-SLS--GPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLK----VHTDSNRAHFSRDVTS 286 (308)
Q Consensus 217 ~~~~~~~-~~~--~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~v~~~~s~d~~~ 286 (308)
.++.++. +++ +...+|+++..-|. .++.+...++|+|.++.. +.++++. .....|++..||.|.+
T Consensus 377 ~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-----QvVrsfsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 377 GKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-----QVVRSFSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred CcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-----eEEeeeccCCccCCceEEEEecCCCcE
Confidence 9999988 444 44567888888776 888899999999999986 6677765 2345677799999999
Q ss_pred EEEee-ceEEEEee
Q 021744 287 LLGSV-SFIMFIGQ 299 (308)
Q Consensus 287 l~~s~-s~~i~~~~ 299 (308)
+.+.+ +..+|-..
T Consensus 452 iYcigED~vlYCF~ 465 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFS 465 (508)
T ss_pred EEEEccCcEEEEEE
Confidence 98655 66665443
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.1e-25 Score=170.34 Aligned_cols=248 Identities=11% Similarity=0.084 Sum_probs=200.0
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~ 100 (308)
.|..+|+++.|+++++|+.... +......++||.+. .++++|..+- ++++.|++|++||+..+++.
T Consensus 31 ~g~~lasgs~dktv~v~n~e~~----------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 31 DGTKLASGSFDKTVSVWNLERD----------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT 100 (313)
T ss_pred cCceeeecccCCceEEEEecch----------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence 4678999999999999998865 12334456788877 7788766554 99999999999999877665
Q ss_pred ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
.....+..-....++|+|.. +.++.|..|...|.++. +.+...+ ..-.+..++|+.++.+++.....|.|.|-..
T Consensus 101 --~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 101 --ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTY-KIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred --EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccc-ceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 23333344556788998866 88999999999999987 5555444 5667888999987788777777799999999
Q ss_pred CCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744 180 ASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAIL 252 (308)
Q Consensus 180 ~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~ 252 (308)
..-++++.++ |+....|+ .|+|+++++|+ |-.+.+||+...-+. .+..+.-+|+.++|+.+ +||++++|..|-
T Consensus 177 psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence 9999999998 77666665 48999999998 899999999877666 67788899999999999 999999999999
Q ss_pred EEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 253 AWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
|=+++++ ..+..++ +.++... +|+|...+|+-++
T Consensus 257 IA~vetG----d~~~eI~-~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 257 IAEVETG----DRVWEIP-CEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred eEecccC----CeEEEee-ccCCceeEEecCCCceeeEEe
Confidence 9999998 5566664 5667777 9999988887555
No 69
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.8e-25 Score=192.14 Aligned_cols=253 Identities=13% Similarity=0.197 Sum_probs=203.1
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEec-CCCe-eeccCCCcEEEEECCCCCCc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~ 100 (308)
+..++++|.|+++++|+-...+ .....++.+|.+. .+++.+ ++.. ++|+.|.+|.+|.+....++
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~~----------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGKQ----------YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL 94 (745)
T ss_pred CeEEeecCCCCceeeeeccCcc----------cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch
Confidence 4579999999999999865440 2223455666665 366664 3333 99999999999999877665
Q ss_pred ccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744 101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~ 180 (308)
. .+.+|+..|.++....++..++|+.|.++++|-.. ++...+++|+..|++++.-|++ .++|||.|++|++|.-
T Consensus 95 ~-~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~- 168 (745)
T KOG0301|consen 95 Y-TLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG- 168 (745)
T ss_pred h-hhhccccceeeeecCCcCceEecccccceEEecch---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-
Confidence 3 66889998988888888888999999999999865 4466799999999999999887 8999999999999975
Q ss_pred CCeEEEEEe-CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744 181 SGQCAGVIN-LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (308)
Q Consensus 181 ~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd 255 (308)
++.++++. |...++.+ .++..++-++.||.|++|++......++.+|..-+++++..++ .++++++|++++||+
T Consensus 169 -~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 169 -GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred -CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence 77888888 77888876 3555666666799999999954445599999999999995544 999999999999999
Q ss_pred cCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744 256 FNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNN 301 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~ 301 (308)
.. ++.+.+.-....+++ .+-++|+.++++++..++++...
T Consensus 248 ~~------e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 248 KD------ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred cC------ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 77 445666656667888 88889999999999999887754
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2.8e-25 Score=192.51 Aligned_cols=263 Identities=15% Similarity=0.203 Sum_probs=204.4
Q ss_pred eEEecCCCeEEEeecCCCCCC-CCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 29 STADTRQKVCNYWRAGKCNRF-PCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 29 ~~s~s~d~~i~~W~~~~~~~~-~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
+++ -.+.++.++........ |.+.. .......||... +++++.+... +||+ .+++++|+..+.+.+....
T Consensus 338 lv~-l~nNtv~~ysl~~s~~~~p~~~~----~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~ 411 (888)
T KOG0306|consen 338 LVL-LANNTVEWYSLENSGKTSPEADR----TSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTIT 411 (888)
T ss_pred EEE-eecCceEEEEeccCCCCCccccc----cceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEec
Confidence 444 66778888775542000 11111 111234578777 8999999888 6655 5679999998887664333
Q ss_pred ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC--
Q 021744 105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-- 181 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-- 181 (308)
.. .+.++.|.|.+++ +.|...|.+.+||+... ..+.+.++|.+.|++++..||+..+++||.|.+|++||..-
T Consensus 412 ~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~ 487 (888)
T KOG0306|consen 412 CG---YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVV 487 (888)
T ss_pred cc---cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEe
Confidence 32 5777888888877 88999999999999988 78888999999999999999999999999999999998752
Q ss_pred ---CeEE--------EEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEE
Q 021744 182 ---GQCA--------GVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFA 244 (308)
Q Consensus 182 ---~~~~--------~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~ 244 (308)
+... .+++.+..+.|+ +||+++|+++- |+++++|-+.+.+.. .+.+|.-||.||.++|| .+++
T Consensus 488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVT 567 (888)
T ss_pred ccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEe
Confidence 1111 234455667766 68999999998 999999999998877 89999999999999999 9999
Q ss_pred EcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEeecCceeE
Q 021744 245 GTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNNKGVV 305 (308)
Q Consensus 245 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~~~~~ 305 (308)
|+.|..|++|-+.-+ .+.+++.+|...|.+ .|-|+..++.+++-......+..+.+.
T Consensus 568 gSADKnVKiWGLdFG----DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 568 GSADKNVKIWGLDFG----DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred ccCCCceEEeccccc----hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence 999999999999987 889999999999999 999987777777733333333344333
No 71
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.8e-26 Score=192.72 Aligned_cols=234 Identities=12% Similarity=0.174 Sum_probs=189.4
Q ss_pred CCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCC
Q 021744 20 GGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGN 96 (308)
Q Consensus 20 ~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~ 96 (308)
++..-.+.++.||+.|+.|++|+.....- ..+.|-....+.|..+ .++..-+++. +++|.|-+|++|+...
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~------~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~ 104 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSN------EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK 104 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccC------CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc
Confidence 33334456899999999999999775410 0112223345678888 7788888878 9999999999999976
Q ss_pred CCCc-ccccceeeeeeeeeee-ecCCce-EEeeCCCeEEEEEcCCCc---------eeeeEee-CcccceEEEEEeCCCC
Q 021744 97 SKNS-NINNRAVIKTDILCRN-WVQGNC-MYGEKCKFLHSWTVGDGF---------KLLTQLE-GHQKVVSGITLPSGSD 163 (308)
Q Consensus 97 ~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~g~~d~~i~iwd~~~~~---------~~~~~~~-~h~~~v~~~~~~~~~~ 163 (308)
.... ...++.|...|.++++ .++... ++|+-|+.|.+||++++. .....+. |+..+|++++-++.+.
T Consensus 105 ~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t 184 (735)
T KOG0308|consen 105 DNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT 184 (735)
T ss_pred CcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence 5422 2245778888999998 455444 899999999999999662 1122333 8899999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEe
Q 021744 164 KLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVG 238 (308)
Q Consensus 164 ~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~ 238 (308)
.+++|+..+.+++||.++.+.+..+. |...+.++ ..+|..+++++ |++|++||+....++ ++..|...|+++..+
T Consensus 185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~ 264 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS 264 (735)
T ss_pred EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeC
Confidence 99999999999999999999888888 88888887 47788888665 999999999999888 899999999999999
Q ss_pred CC--EEEEEcCCCeEEEEEcCCC
Q 021744 239 ND--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 239 ~~--~l~~g~~dg~i~iwd~~~~ 259 (308)
|+ .+.+|+.||.|..=|+++.
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCcceEEecCCCCcEEecccCCc
Confidence 99 9999999999999999985
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.7e-24 Score=168.71 Aligned_cols=229 Identities=16% Similarity=0.204 Sum_probs=179.3
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ceEEeeC--CCeEEEEEcCCCceeeeEe
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NCMYGEK--CKFLHSWTVGDGFKLLTQL 146 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~--d~~i~iwd~~~~~~~~~~~ 146 (308)
++.|+++|.+ ++++.|.+++|||..+++..... ..++-.+..+.|-... .++.++. |.+||..++.+. +.++-+
T Consensus 19 sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN-kylRYF 96 (311)
T KOG1446|consen 19 SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN-KYLRYF 96 (311)
T ss_pred EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecCCceEEEccCCCCCceEEEEeecC-ceEEEc
Confidence 7999999999 99999999999999888765321 2222235666665554 4455554 899999999999 899999
Q ss_pred eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEEcCCCEEEEEcC-CcEEEEEcCCCce--
Q 021744 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISEGPWIFIGVT-NFVKAWNTQTNTD-- 222 (308)
Q Consensus 147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~d-~~i~~wd~~~~~~-- 222 (308)
.||...|..++.+|-+..++|++.|++|++||++..++...+. ...++.++.|.|-++|++.. +.|++||++....
T Consensus 97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP 176 (311)
T KOG1446|consen 97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP 176 (311)
T ss_pred CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence 9999999999999999999999999999999999988888887 45566677788999998874 4999999997522
Q ss_pred -eee--e-CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC----CeEEEEecCCCeEEEee-
Q 021744 223 -LSL--S-GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD----SNRAHFSRDVTSLLGSV- 291 (308)
Q Consensus 223 -~~~--~-~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~v~~~~s~d~~~l~~s~- 291 (308)
.++ . +...+.+.|.|+|+ +++.++..+.+++.|.-.+ ..+.++..+.. ++.+.|+||+++++++.
T Consensus 177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G----~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG----TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC----cEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence 222 2 34668899999999 8888899999999999988 56666665443 33449999999999766
Q ss_pred ceEEEEee--cCceeE
Q 021744 292 SFIMFIGQ--NNKGVV 305 (308)
Q Consensus 292 s~~i~~~~--~~~~~~ 305 (308)
+..|.+|. +.+.+.
T Consensus 253 dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 253 DGTIHVWNLETGKKVA 268 (311)
T ss_pred CCcEEEEEcCCCcEee
Confidence 45555554 444443
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.8e-24 Score=194.47 Aligned_cols=282 Identities=15% Similarity=0.089 Sum_probs=212.5
Q ss_pred CCCCceeEEEeecCCCCCCCCCCceEEec--CCCeEEEeecCCCCCCCCCccccc--CCCCCCccccccc--eeEEecCC
Q 021744 5 AHGGNKRVFHRLGGGGGDGGGGGLSTADT--RQKVCNYWRAGKCNRFPCPYLHRE--LPLPPAATANGAA--AKRFANNT 78 (308)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s--~d~~i~~W~~~~~~~~~~~~~~~~--~~~~~~~~gh~~~--~i~~s~~g 78 (308)
.|++ +++|+=-=++ .+..+|||+ .|+.+++|+...-. ++.....+ .+.......|.+. |+.|+|||
T Consensus 10 ~H~~-~~IfSIdv~p-----dg~~~aTgGq~~d~~~~iW~~~~vl--~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG 81 (942)
T KOG0973|consen 10 NHNE-KSIFSIDVHP-----DGVKFATGGQVLDGGIVIWSQDPVL--DEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG 81 (942)
T ss_pred ccCC-eeEEEEEecC-----CceeEecCCccccccceeecccccc--chhhhhhcccchhheeeccccCceeEEEECCCC
Confidence 4555 6666654444 356899999 89999999866431 11111111 1222334467666 89999999
Q ss_pred Ce-eeccCCCcEEEEECCC--CCCc---------------ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC
Q 021744 79 WG-RNNNFNNHSNNYRAGN--SKNS---------------NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG 139 (308)
Q Consensus 79 ~~-~s~~~d~~i~vwd~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~ 139 (308)
.+ |+|+.|+.|.||+... .... .....+|...+..+.|+|++.+ ++++.|+.|.||+..+.
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence 99 9999999999999973 0100 0123567777999999999977 99999999999999999
Q ss_pred ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC---Ce----eE--EEEcCCCEEEEEc--
Q 021744 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG---GE----VG--CMISEGPWIFIGV-- 208 (308)
Q Consensus 140 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~---~~----v~--~~~~~~~~l~~~~-- 208 (308)
+.+..+++|...|-.+.|+|-|+++++-+.|++|++|++.+....+.+..+ .+ .. +++|||++|++..
T Consensus 162 -~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 162 -ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred -eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 899999999999999999999999999999999999998887777766521 11 12 2368999999743
Q ss_pred C---CcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-------------------EEEEEcCCCeEEEEEcCCCCccccc
Q 021744 209 T---NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-------------------LLFAGTQDGAILAWKFNVTTNCFEP 265 (308)
Q Consensus 209 d---~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-------------------~l~~g~~dg~i~iwd~~~~~~~~~~ 265 (308)
+ .++.|.+-.+.+.- .+.+|..++.++.|+|. .+|+|+.|+.|.||..... ++
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~----RP 316 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP----RP 316 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC----Cc
Confidence 2 37888888776644 89999999999999872 4788999999999999776 55
Q ss_pred ceecc-ccCCCeEE-EEecCCCeEEEe-eceEEEEee
Q 021744 266 AASLK-VHTDSNRA-HFSRDVTSLLGS-VSFIMFIGQ 299 (308)
Q Consensus 266 ~~~~~-~~~~~v~~-~~s~d~~~l~~s-~s~~i~~~~ 299 (308)
+..+. -....|.. +|+|||..|+++ .+..+....
T Consensus 317 l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 317 LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 55443 35667888 999999887754 466666543
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.1e-24 Score=168.95 Aligned_cols=226 Identities=15% Similarity=0.135 Sum_probs=179.4
Q ss_pred eeEEecCCCe--eeccCCCcEEEEECCC-CCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744 71 AKRFANNTWG--RNNNFNNHSNNYRAGN-SKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQL 146 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~ 146 (308)
+++|||.... +.+|+|++||+|++.. ++........+.+.+.+++|+.+|.. .+|+.|+.+++||+.+++ ...+
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q--~~~v 109 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ--VSQV 109 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC--eeee
Confidence 7999995544 7999999999999965 56665566778888999999999977 789999999999999983 5667
Q ss_pred eCcccceEEEEEeCCCC--EEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744 147 EGHQKVVSGITLPSGSD--KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL 223 (308)
Q Consensus 147 ~~h~~~v~~~~~~~~~~--~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~ 223 (308)
..|.++|..+.|-+... .|+|||.|++|++||.+...++.++..++.+.++.....+++++. ++.|.+|+|+.+...
T Consensus 110 ~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 110 AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTE 189 (347)
T ss_pred eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcch
Confidence 78999999999987554 799999999999999999999999999999888876667777665 999999999876543
Q ss_pred --ee-eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccC---------CCeEE-EEecCCCeEE
Q 021744 224 --SL-SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT---------DSNRA-HFSRDVTSLL 288 (308)
Q Consensus 224 --~~-~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~v~~-~~s~d~~~l~ 288 (308)
.. ..-.-.++|++..++ ..+.|+-+|++.|..+..+.+ +.-.+++-|. ..|+. +|.|....|+
T Consensus 190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv 267 (347)
T KOG0647|consen 190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV 267 (347)
T ss_pred hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeecccceEE
Confidence 21 223447899998887 779999999999999988633 2233444443 24677 9999887888
Q ss_pred Eee-ceEEEEeec
Q 021744 289 GSV-SFIMFIGQN 300 (308)
Q Consensus 289 ~s~-s~~i~~~~~ 300 (308)
+.+ +..+-.|..
T Consensus 268 TaGsDGtf~FWDk 280 (347)
T KOG0647|consen 268 TAGSDGTFSFWDK 280 (347)
T ss_pred EecCCceEEEecc
Confidence 655 555544443
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-23 Score=165.92 Aligned_cols=258 Identities=11% Similarity=0.119 Sum_probs=194.7
Q ss_pred CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eecc--CCCcEEEEECCCCC
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNN--FNNHSNNYRAGNSK 98 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~--~d~~i~vwd~~~~~ 98 (308)
++.|..+++++.|.+++++|..++ ........-+-+. .++|...... .-++ .|.+||.-++.+.+
T Consensus 23 s~~G~~litss~dDsl~LYd~~~g-----------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 23 SDDGLLLITSSEDDSLRLYDSLSG-----------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred cCCCCEEEEecCCCeEEEEEcCCC-----------ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 456788999999999999999887 2222222222233 5677655555 4444 58999999998887
Q ss_pred CcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744 99 NSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (308)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w 177 (308)
.+. -..+|.+.|..+..+|-+.. ++++.|++|++||++.. +....+.. ..-..++|+|+|-.+|++.....|++|
T Consensus 92 ylR-YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 92 YLR-YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred eEE-EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEec--CCCcceeECCCCcEEEEecCCCeEEEE
Confidence 663 45778899999999998866 99999999999999976 55554443 233467899999999999888899999
Q ss_pred eCCC--CeEEEEEeC----CCeeEE--EEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC---EEEEEEeCC--EE
Q 021744 178 DCAS--GQCAGVINL----GGEVGC--MISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ---VYAMAVGND--LL 242 (308)
Q Consensus 178 d~~~--~~~~~~~~~----~~~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~---v~~~~~~~~--~l 242 (308)
|++. ..+..++.. ..+... ++++|++++.+. .+.+++.|.-+|..+ ++..+... ..+.+|+|| ++
T Consensus 168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 9996 345555552 233343 368999998776 778999999999877 56555432 267889999 89
Q ss_pred EEEcCCCeEEEEEcCCCCcccccceeccc-cCCCeEE-EEecCCCeEEEeec-eEEEEee
Q 021744 243 FAGTQDGAILAWKFNVTTNCFEPAASLKV-HTDSNRA-HFSRDVTSLLGSVS-FIMFIGQ 299 (308)
Q Consensus 243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~-~~s~d~~~l~~s~s-~~i~~~~ 299 (308)
++|+.||+|.+|+++++ ..+..+.+ +..++.+ .|+|.-..++++++ ...|+..
T Consensus 248 l~gs~dg~i~vw~~~tg----~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETG----KKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred EEecCCCcEEEEEcCCC----cEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 99999999999999998 67777776 6889999 99998877776664 4444443
No 76
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.3e-23 Score=183.62 Aligned_cols=231 Identities=14% Similarity=0.136 Sum_probs=169.1
Q ss_pred eEEecCCCe-eeccCCCcEEEEECCCC----------CCcc--cccceeeeeeeeeeeec-CCc-eEEeeCCCeEEEEEc
Q 021744 72 KRFANNTWG-RNNNFNNHSNNYRAGNS----------KNSN--INNRAVIKTDILCRNWV-QGN-CMYGEKCKFLHSWTV 136 (308)
Q Consensus 72 i~~s~~g~~-~s~~~d~~i~vwd~~~~----------~~~~--~~~~~~~~~~~~~~~~~-~~~-~~~g~~d~~i~iwd~ 136 (308)
...++++.. ++++.+.....|+...+ +... ....+|...+..+.|+| ++. +++++.|+.|++||+
T Consensus 26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred ccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 345566555 77777776677765322 1111 12456777899999999 554 499999999999999
Q ss_pred CCCc------eeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEE
Q 021744 137 GDGF------KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFI 206 (308)
Q Consensus 137 ~~~~------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~ 206 (308)
.+.. +.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.+..+. |...+.++ .+++.+|++
T Consensus 106 ~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLat 185 (493)
T PTZ00421 106 PEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCT 185 (493)
T ss_pred CCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEE
Confidence 7641 3467889999999999999975 689999999999999999999888887 67777766 478999998
Q ss_pred Ec-CCcEEEEEcCCCcee-eeeCCCCC-EEEEEEeCC--EEEEE----cCCCeEEEEEcCCCCcccccceecccc-CCCe
Q 021744 207 GV-TNFVKAWNTQTNTDL-SLSGPVGQ-VYAMAVGND--LLFAG----TQDGAILAWKFNVTTNCFEPAASLKVH-TDSN 276 (308)
Q Consensus 207 ~~-d~~i~~wd~~~~~~~-~~~~~~~~-v~~~~~~~~--~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v 276 (308)
++ |+.|++||+++++.. .+.+|... +..+.|.++ .++++ +.|+.|++||+++.. .++.....+ ...+
T Consensus 186 gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~---~p~~~~~~d~~~~~ 262 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA---SPYSTVDLDQSSAL 262 (493)
T ss_pred ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC---CceeEeccCCCCce
Confidence 77 999999999998877 67788764 446677776 55543 358999999998753 344433333 3445
Q ss_pred EE-EEecCCCeEEEee--c--eEEEEeecCceeE
Q 021744 277 RA-HFSRDVTSLLGSV--S--FIMFIGQNNKGVV 305 (308)
Q Consensus 277 ~~-~~s~d~~~l~~s~--s--~~i~~~~~~~~~~ 305 (308)
.. .|++++.+|++++ + +.+|-..+.+-+.
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 55 8999999887544 4 4445555544433
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.2e-24 Score=164.77 Aligned_cols=229 Identities=12% Similarity=0.109 Sum_probs=186.1
Q ss_pred Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc-ccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEc
Q 021744 63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI-NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTV 136 (308)
Q Consensus 63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~ 136 (308)
..++|... .++|+.+|.. ++|+.|+++++|+++..+.... ...+|...+..++++|.. .+++++.|.+|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 34566655 7999999999 9999999999999987644332 346677777667777655 4589999999999999
Q ss_pred CCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEE-EEcCCcEE
Q 021744 137 GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIF-IGVTNFVK 213 (308)
Q Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~-~~~d~~i~ 213 (308)
+.+ ++...... +..-.-+.|+|++++++.++.|..|.+.|.++.+.+...+....+.-+ ..++.+++ +.+.|+|.
T Consensus 95 r~~-k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 95 RSG-KCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred ccC-cEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 999 67766663 344456789999999999999999999999999988888766555443 23455555 55589999
Q ss_pred EEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744 214 AWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG 289 (308)
Q Consensus 214 ~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~ 289 (308)
+......+++ .+++|+....||.|+|+ +||+|+.|-.+.+||+..- -+++.+..+.-+|+. .||.||++|++
T Consensus 173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL----iC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL----ICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh----hhheeeccccCceEEEEeccCcceeec
Confidence 9988887777 89999999999999999 9999999999999999974 788899999999999 99999999995
Q ss_pred ee-ceEEEE
Q 021744 290 SV-SFIMFI 297 (308)
Q Consensus 290 s~-s~~i~~ 297 (308)
++ +..|=|
T Consensus 249 aSEDh~IDI 257 (313)
T KOG1407|consen 249 ASEDHFIDI 257 (313)
T ss_pred cCccceEEe
Confidence 55 444433
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.4e-25 Score=180.01 Aligned_cols=235 Identities=11% Similarity=0.061 Sum_probs=181.7
Q ss_pred eeEEEeecCCCCCCC-----CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-e
Q 021744 10 KRVFHRLGGGGGDGG-----GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-R 81 (308)
Q Consensus 10 ~~~~~~~~~~~~~~~-----~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~ 81 (308)
|-.+...|+..+++- ..+++++++.|..+++||+.++. .......+|... +.+|.|||.. +
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd-----------~~~~y~~~~~~S~~sc~W~pDg~~~V 328 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD-----------LRHLYPSGLGFSVSSCAWCPDGFRFV 328 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch-----------hhhhcccCcCCCcceeEEccCCceeE
Confidence 445555666655432 25799999999999999999981 111112233333 8999999999 9
Q ss_pred eccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC
Q 021744 82 NNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS 160 (308)
Q Consensus 82 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (308)
+|+.|+++..||++.. .+..........+..++..++|.. +..+.|..|++++.++. .... +.....+|++++++.
T Consensus 329 ~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~dr~-lise~~~its~~iS~ 405 (519)
T KOG0293|consen 329 TGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VDRG-LISEEQPITSFSISK 405 (519)
T ss_pred ecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hhhc-cccccCceeEEEEcC
Confidence 9999999999999643 222223333344888999999977 77789999999998876 2232 333467999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CC---CeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCE
Q 021744 161 GSDKLYSGSKDETVRVWDCASGQCAGVIN-LG---GEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQV 232 (308)
Q Consensus 161 ~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~---~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v 232 (308)
++++++.--.+..+.+||++..+.++.+. |. ..+.+.+ .+..++++|+ |+.|++|+..+++++ .+.+|...|
T Consensus 406 d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v 485 (519)
T KOG0293|consen 406 DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV 485 (519)
T ss_pred CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCccee
Confidence 99999999999999999999877777766 22 2233333 4567888998 999999999999998 899999999
Q ss_pred EEEEEeCC---EEEEEcCCCeEEEEEcCC
Q 021744 233 YAMAVGND---LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 233 ~~~~~~~~---~l~~g~~dg~i~iwd~~~ 258 (308)
++++|+|. .+|++++||+|+||-...
T Consensus 486 NcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 486 NCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999998 899999999999998764
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-23 Score=164.99 Aligned_cols=262 Identities=13% Similarity=0.145 Sum_probs=201.1
Q ss_pred eEEecCCCeEEEeecCCCCCCCCCcccccCCC---CCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 29 STADTRQKVCNYWRAGKCNRFPCPYLHRELPL---PPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 29 ~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~---~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
|+.|+....|.=+++...++ .|. ....|. .-.+..|.++--++.-++.+ |+|+.|-+|+|||+.....+. .+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~-~~~--~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg-~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPK-GCT--DSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLG-IL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCcc-ccc--cccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhc-ce
Confidence 67777777777666543310 000 000111 12345676663455667889 999999999999997765543 45
Q ss_pred ceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
..|.+.+.++.|.+.- ..++|++||.|.+|+...- +.+..+++|++.|+.++++|.+++.++.+.|+.+++||+-+
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 5677789999998877 4599999999999999988 89999999999999999999999999999999999999999
Q ss_pred CeEEEEEe--CCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744 182 GQCAGVIN--LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 182 ~~~~~~~~--~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~ 258 (308)
|+.-...+ +......+.+.|.+++++..+.|-+|.+.+.........+..+.++.|... .|++|.+|+.|.+||...
T Consensus 159 Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 159 GRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred CccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC
Confidence 87766655 444555556889999999989999999988776633333456788888766 999999999999999998
Q ss_pred CCcccccceeccccCCCeEE-E-E-ecCCCeEEE-eeceEEEEee
Q 021744 259 TTNCFEPAASLKVHTDSNRA-H-F-SRDVTSLLG-SVSFIMFIGQ 299 (308)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~-~-~-s~d~~~l~~-s~s~~i~~~~ 299 (308)
. .+...+.+|...|.. . | .|++.+|++ |+++.|.+|.
T Consensus 239 ~----~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 239 D----TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred C----ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 5 788999999999988 4 3 356778874 4455555554
No 80
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=5.3e-25 Score=183.08 Aligned_cols=252 Identities=13% Similarity=0.172 Sum_probs=196.3
Q ss_pred CCceEEecCCCeEEEeecCC-CCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 26 GGLSTADTRQKVCNYWRAGK-CNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~-~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
...+.||+ .+.|+|||+.. ++|.|..-|.- ....+. .+...|||+. ++|++-.++.|||+....+-.
T Consensus 431 trhVyTgG-kgcVKVWdis~pg~k~PvsqLdc--------l~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri 501 (705)
T KOG0639|consen 431 TRHVYTGG-KGCVKVWDISQPGNKSPVSQLDC--------LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI 501 (705)
T ss_pred cceeEecC-CCeEEEeeccCCCCCCccccccc--------cCcccceeeeEecCCCceEEeccccceeeeeeccCCCcch
Confidence 34455544 57899999764 33433211110 001111 5778999999 999999999999997553321
Q ss_pred ccccee-eeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 102 INNRAV-IKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 102 ~~~~~~-~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
...... .-....++.+|+... .++..||.|.|||+.+. ..++.|+||++.+.|+.++++|..|.||+-|.+|+.||+
T Consensus 502 kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 502 KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 111111 122456678888865 78889999999999998 899999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744 180 ASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (308)
Q Consensus 180 ~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iw 254 (308)
++++.+........|.++ +|.+.++++|. ++.+.+......+...+..|++.|.++.|.+- ++++.+.|+.+..|
T Consensus 581 regrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 581 REGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 660 (705)
T ss_pred hhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhc
Confidence 999998888888888877 68999999998 77888888877777788889999999999987 99999999999999
Q ss_pred EcCCCCcccccceeccccCCCeEEEEecCCCeEEEee
Q 021744 255 KFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSV 291 (308)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~s~ 291 (308)
....+ ..+...+......+|..|.|.++++++.
T Consensus 661 rtPyG----asiFqskE~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 661 RTPYG----ASIFQSKESSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred cCccc----cceeeccccCcceeeeeccCceEEEecC
Confidence 99887 5556565555455559999999999543
No 81
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=3.1e-24 Score=171.88 Aligned_cols=231 Identities=15% Similarity=0.167 Sum_probs=183.2
Q ss_pred CCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744 61 PPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTV 136 (308)
Q Consensus 61 ~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~ 136 (308)
...+..|... +++.+|+.+. +||+.|..-.||++.+++.+ ....+|+..|.++.|+.+|.+ ++|+-+|.|+||.+
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-eEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 3456788888 8999998888 99999999999999988743 466789999999999999987 99999999999999
Q ss_pred CCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEE--EEcCCCEEEEEc-CCcE
Q 021744 137 GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGC--MISEGPWIFIGV-TNFV 212 (308)
Q Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~--~~~~~~~l~~~~-d~~i 212 (308)
.++ .....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+. |..++++ +.|+|+.++++. |++|
T Consensus 136 stg-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 136 STG-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred ccC-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence 999 5666666566788889999999999999999999999999977777777 6666654 579999999988 9999
Q ss_pred EEEEcCCCcee-eee---------------------------------------------------CCCCCEEEEEEeC-
Q 021744 213 KAWNTQTNTDL-SLS---------------------------------------------------GPVGQVYAMAVGN- 239 (308)
Q Consensus 213 ~~wd~~~~~~~-~~~---------------------------------------------------~~~~~v~~~~~~~- 239 (308)
++||+++++++ .+. .+...+.|+.+.|
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 99999988644 222 0111223333333
Q ss_pred --C--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 240 --D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 240 --~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
. ++|+|+-||+|.|||+... .++..-.|...|.. .|-+ ..+|++++ ...++.+.
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~-----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAAS-----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred ccccchhhcccccceEEEEecccc-----hhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 3 7899999999999999984 44555567888887 9998 55666555 55555554
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-24 Score=183.91 Aligned_cols=220 Identities=14% Similarity=0.188 Sum_probs=186.9
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccc-cccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATA-NGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~ 100 (308)
.|..||.|..+++|.+||..+. .......+ |..- +++|. +.. .+|+.|+.|..+|+...+..
T Consensus 228 ~G~~LavG~~~g~v~iwD~~~~------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 228 DGSHLAVGTSDGTVQIWDVKEQ------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCEEEEeecCCeEEEEehhhc------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 3678999999999999998876 22333444 5555 77887 555 99999999999999877766
Q ss_pred ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEee--CCCcEEE
Q 021744 101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGS--KDETVRV 176 (308)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s--~dg~v~~ 176 (308)
......|...|..+.+++++.. ++|+.|+.+.|||.... +++..+..|+..|.+++|+| ....||+|+ .|+.|++
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 5557788889999999999976 99999999999999777 78889999999999999999 557788774 6999999
Q ss_pred EeCCCCeEEEEEeCCCeeEEE-E-cCCCEEEE--Ec-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCC
Q 021744 177 WDCASGQCAGVINLGGEVGCM-I-SEGPWIFI--GV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQD 248 (308)
Q Consensus 177 wd~~~~~~~~~~~~~~~v~~~-~-~~~~~l~~--~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~d 248 (308)
||..+++.+..+.....|+.+ + +..+.|++ |. ++.|.||+..+.+.+ .+.+|...|..++++|| .+++|+.|
T Consensus 373 wn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 373 WNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred EEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 999999999999999999887 3 45555554 33 779999999998777 89999999999999999 99999999
Q ss_pred CeEEEEEcCCC
Q 021744 249 GAILAWKFNVT 259 (308)
Q Consensus 249 g~i~iwd~~~~ 259 (308)
.++++|++-..
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 99999998774
No 83
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2.8e-23 Score=184.19 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=161.0
Q ss_pred eccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecC-Cce-EEeeCCCeEEEEEcCCCc-------eeeeEeeCcccc
Q 021744 82 NNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQ-GNC-MYGEKCKFLHSWTVGDGF-------KLLTQLEGHQKV 152 (308)
Q Consensus 82 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~g~~d~~i~iwd~~~~~-------~~~~~~~~h~~~ 152 (308)
.|+.++.|++|+...... .....+|...+..+.|+|. +.. ++|+.|+.|++||+.++. ..+..+.+|...
T Consensus 49 gGG~~gvI~L~~~~r~~~-v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPP-VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCCceeEEEeeecCCCce-EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 466788999999865432 3345678888999999996 444 899999999999997541 134567899999
Q ss_pred eEEEEEeCCCCE-EEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeC
Q 021744 153 VSGITLPSGSDK-LYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG 227 (308)
Q Consensus 153 v~~~~~~~~~~~-l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~ 227 (308)
|.+++|+|++.. |++++.|++|++||+++++.+..+.+...+.++ .+++.+|++++ |+.|++||+++++.. .+.+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 999999998876 579999999999999999888888777777766 47899998776 999999999999877 7888
Q ss_pred CCCCEEEEE-----EeCC--EEEEEcCCC----eEEEEEcCCCCcccccceecc--ccCCCeEEEEe-cCCCeEEE-eec
Q 021744 228 PVGQVYAMA-----VGND--LLFAGTQDG----AILAWKFNVTTNCFEPAASLK--VHTDSNRAHFS-RDVTSLLG-SVS 292 (308)
Q Consensus 228 ~~~~v~~~~-----~~~~--~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~s-~d~~~l~~-s~s 292 (308)
|.+.+.+.. |+++ ++++++.|+ .|+|||++... +++..+. .+...+...|. +++.++++ +++
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT---SALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---CceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 887654333 3466 778777664 79999999642 4454443 33344444444 45766654 456
Q ss_pred eEEEEeecC
Q 021744 293 FIMFIGQNN 301 (308)
Q Consensus 293 ~~i~~~~~~ 301 (308)
..|+++.-.
T Consensus 285 ~tIr~~e~~ 293 (568)
T PTZ00420 285 GNCRYYQHS 293 (568)
T ss_pred CeEEEEEcc
Confidence 666666543
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=3.1e-24 Score=178.94 Aligned_cols=266 Identities=11% Similarity=0.123 Sum_probs=192.3
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcc--
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN-- 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~-- 101 (308)
+|..++|||.|.+|++||.+..+... +. .....|..+|....++|++.|.. +..+..-..+|+|.+..+...
T Consensus 178 ~GaR~~sGs~Dy~v~~wDf~gMdas~-~~----fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 178 SGARFVSGSLDYTVKFWDFQGMDASM-RS----FRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred CCceeeeccccceEEEEecccccccc-hh----hhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee
Confidence 36789999999999999987642110 11 22234556777778999999998 777777789999986433211
Q ss_pred ---------cccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeEee-----CcccceEEEEEeCCCCEE
Q 021744 102 ---------INNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLE-----GHQKVVSGITLPSGSDKL 165 (308)
Q Consensus 102 ---------~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l 165 (308)
...++|...+.+.+|.|.. .+++++.||++||||+...++.++.++ +-.-+++.++|+++++.+
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence 1346788889999999987 449999999999999987655555554 234578999999999999
Q ss_pred EEeeCCCcEEEEeCCCC--eEEEEEe--CCC--eeEEE--EcCCCEEEE-EcCCcEEEEEcCCCcee--eeeC--CCCCE
Q 021744 166 YSGSKDETVRVWDCASG--QCAGVIN--LGG--EVGCM--ISEGPWIFI-GVTNFVKAWNTQTNTDL--SLSG--PVGQV 232 (308)
Q Consensus 166 ~s~s~dg~v~~wd~~~~--~~~~~~~--~~~--~v~~~--~~~~~~l~~-~~d~~i~~wd~~~~~~~--~~~~--~~~~v 232 (308)
|+|..||+|.+|+.... .+...+. |.. .++|+ +++|++|++ |.|+++++||++..+.. ...+ ...+-
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~ 412 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPG 412 (641)
T ss_pred hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCC
Confidence 99999999999997642 2222232 433 67776 578999997 55999999999986533 2222 23356
Q ss_pred EEEEEeCC--EEEEEcC------CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC-CCeEEEeeceEEEEee
Q 021744 233 YAMAVGND--LLFAGTQ------DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD-VTSLLGSVSFIMFIGQ 299 (308)
Q Consensus 233 ~~~~~~~~--~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d-~~~l~~s~s~~i~~~~ 299 (308)
+.++|||+ ++++|+. .|.+.+||..+- +.+..+.-....|.. .|+|- ++.++++++..+++..
T Consensus 413 tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~----d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 413 TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL----DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CccccCCCceEEEecccccCCCCCceEEEEeccce----eeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 78999999 7777764 467999998885 667776655555544 99996 4566677765555543
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=9.4e-24 Score=172.65 Aligned_cols=223 Identities=17% Similarity=0.228 Sum_probs=186.3
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG 148 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~ 148 (308)
++...|..+. ++|+.|+++-++|....+.+ ....+|...+..+.++++... ++++.|..|+||.+... ........
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~~~ 301 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSSRP 301 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecchhhhh-hhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCcccccc
Confidence 4555666456 99999999999999776654 356788888999999998855 88999999999999877 45666778
Q ss_pred cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC-C--eeEE--EEcCCCEEEEEc-CCcEEEEEcCCCce
Q 021744 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-G--EVGC--MISEGPWIFIGV-TNFVKAWNTQTNTD 222 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~-~--~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~ 222 (308)
|..+|+.+..+|.+.||++++.|++..+.|++++.++....++ . .+.+ +.|||-++.+|. |+.+++||+..+..
T Consensus 302 h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 302 HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc
Confidence 9999999999999999999999999999999999998887754 2 2333 358888888888 99999999999887
Q ss_pred e-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc-CCCeEE-EEecCCCeEEEee-ceEEE
Q 021744 223 L-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH-TDSNRA-HFSRDVTSLLGSV-SFIMF 296 (308)
Q Consensus 223 ~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~-~~s~d~~~l~~s~-s~~i~ 296 (308)
. .+.+|.++|.+++|+.+ +|+++++|+.|++||++.- +..+++... ...+.. .|.+.|++|+.++ ++.+|
T Consensus 382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl----~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL----KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh----cccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence 6 89999999999999999 9999999999999999986 445555432 236777 9999999998665 78888
Q ss_pred Eee
Q 021744 297 IGQ 299 (308)
Q Consensus 297 ~~~ 299 (308)
+..
T Consensus 458 ~~~ 460 (506)
T KOG0289|consen 458 ICK 460 (506)
T ss_pred EEe
Confidence 765
No 86
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3.4e-24 Score=185.08 Aligned_cols=271 Identities=12% Similarity=0.133 Sum_probs=204.3
Q ss_pred CCceEEecCCCeEEEeecCCCCCCC---CCccccc------------------CC-----CCCCccccccc-eeEEecCC
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFP---CPYLHRE------------------LP-----LPPAATANGAA-AKRFANNT 78 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~---~~~~~~~------------------~~-----~~~~~~gh~~~-~i~~s~~g 78 (308)
..-++|+|.|++||+|+...|-... ...+..+ .+ ....+.+..+- +++++|+|
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 4459999999999999987652110 0111000 00 00111122233 89999999
Q ss_pred Ce-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC----ceEEeeCCCeEEEEEcCCCceeeeEeeCcccce
Q 021744 79 WG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG----NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV 153 (308)
Q Consensus 79 ~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v 153 (308)
++ |+|..-|++|||++...+.. .....|+..+.++.|+... .+++++.|..|+|||+.....+++++.+|...|
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~~-~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEYT-CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred ceecccCccCceEEEEehhhhhh-hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 99 99999999999999655433 2456788889999998655 238899999999999998777899999999999
Q ss_pred EEEEEeCCC--CEEEEeeCCCcEEEEeCCCCeEEEEEe------CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCce
Q 021744 154 SGITLPSGS--DKLYSGSKDETVRVWDCASGQCAGVIN------LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTD 222 (308)
Q Consensus 154 ~~~~~~~~~--~~l~s~s~dg~v~~wd~~~~~~~~~~~------~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~ 222 (308)
+++.|-..+ ..+++++.|+.|.+--.+.......+. ....+..+ -|.-++++++. |..|++||+.+++.
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 999998776 678999999988765443221122222 11223333 36677777655 99999999999987
Q ss_pred e-eee---CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE-EeeceE
Q 021744 223 L-SLS---GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSVSFI 294 (308)
Q Consensus 223 ~-~~~---~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~s~~ 294 (308)
. .++ .|++....+...|. |+++.+.|.++.++|+.++ +++..+.+|...|+. .|.+|-+.|+ ++++.-
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg----EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG----ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc----hhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 7 555 46677888888998 9999999999999999998 999999999999999 9999999988 677888
Q ss_pred EEEeecC
Q 021744 295 MFIGQNN 301 (308)
Q Consensus 295 i~~~~~~ 301 (308)
||+|+-.
T Consensus 707 IFvW~lp 713 (1080)
T KOG1408|consen 707 IFVWKLP 713 (1080)
T ss_pred EEEEECc
Confidence 8888743
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.5e-24 Score=176.90 Aligned_cols=231 Identities=11% Similarity=0.040 Sum_probs=175.9
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCC--
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKN-- 99 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~-- 99 (308)
...||+.+..+.+.|||..+..-.+... .+......+.||+.. .++|++...- ++++.|++|++||+.....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~--~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~ 214 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKAS--GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED 214 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCccccc--ccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC
Confidence 4578888999999999987651111100 011222356789885 8999987665 9999999999999964332
Q ss_pred ----cccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCC-CceeeeEeeCcccceEEEEEeCC-CCEEEEeeCC
Q 021744 100 ----SNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGD-GFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKD 171 (308)
Q Consensus 100 ----~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d 171 (308)
......+|...+..++|.+.. .+.+.+.|+.+.|||+++ ..+..+..++|.+.|.|++|+|- +..|||||.|
T Consensus 215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D 294 (422)
T KOG0264|consen 215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD 294 (422)
T ss_pred ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC
Confidence 122345677778999998876 347889999999999994 22677788899999999999985 5668999999
Q ss_pred CcEEEEeCCC-CeEEEEEe-CCCeeEEE-E-cC-CCEEEEEc-CCcEEEEEcCCC--------------cee-eeeCCCC
Q 021744 172 ETVRVWDCAS-GQCAGVIN-LGGEVGCM-I-SE-GPWIFIGV-TNFVKAWNTQTN--------------TDL-SLSGPVG 230 (308)
Q Consensus 172 g~v~~wd~~~-~~~~~~~~-~~~~v~~~-~-~~-~~~l~~~~-d~~i~~wd~~~~--------------~~~-~~~~~~~ 230 (308)
++|++||+++ .+++.++. |+..+..+ + |. ...|++++ |+.+.+||+..- +++ ...+|..
T Consensus 295 ~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~ 374 (422)
T KOG0264|consen 295 KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA 374 (422)
T ss_pred CcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc
Confidence 9999999997 45666666 78888887 3 44 44566544 999999998642 112 4568999
Q ss_pred CEEEEEEeCC---EEEEEcCCCeEEEEEcCC
Q 021744 231 QVYAMAVGND---LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 231 ~v~~~~~~~~---~l~~g~~dg~i~iwd~~~ 258 (308)
.|..+.|+|. .+++.++|+.+.||....
T Consensus 375 kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 375 KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999998 899999999999999773
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.4e-24 Score=179.66 Aligned_cols=223 Identities=13% Similarity=0.146 Sum_probs=165.2
Q ss_pred cccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC----CcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744 65 TANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK----NSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTV 136 (308)
Q Consensus 65 ~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~ 136 (308)
.+|+.. ++++.|.|.. ++|+.|.+|++||+..-. ...+........+..+.|++.+.. +..+.....+|+|-
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 356555 8999999999 999999999999995322 222222333445889999999855 55666678888886
Q ss_pred CCCceeee------------EeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCC-eEEEEEeCC----Ce---eE
Q 021744 137 GDGFKLLT------------QLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASG-QCAGVINLG----GE---VG 195 (308)
Q Consensus 137 ~~~~~~~~------------~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~-~~~~~~~~~----~~---v~ 195 (308)
... +... .-+||...+++.+|+|+. +.++|++.||++++||++.. +.++.+++. .. ..
T Consensus 244 dG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 244 DGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred CCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 543 2222 236899999999999975 66899999999999999864 455566521 11 22
Q ss_pred EE-EcCCCEEEEEc-CCcEEEEEcCCCcee----eeeCCCC--CEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCccccc
Q 021744 196 CM-ISEGPWIFIGV-TNFVKAWNTQTNTDL----SLSGPVG--QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEP 265 (308)
Q Consensus 196 ~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~----~~~~~~~--~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~ 265 (308)
|. .++++++++|. ||.|.+|+....... .-.+|.. .|+||.||++ +|++-+.|+++++||++..+ ++
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k---kp 399 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK---KP 399 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc---cc
Confidence 33 47899999877 999999998655332 4457776 8999999999 99999999999999999874 56
Q ss_pred ceeccccC---CCeEEEEecCCCeEEEee
Q 021744 266 AASLKVHT---DSNRAHFSRDVTSLLGSV 291 (308)
Q Consensus 266 ~~~~~~~~---~~v~~~~s~d~~~l~~s~ 291 (308)
+....+-. ....|+|||+.++++++.
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecc
Confidence 66555332 233449999999988554
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3e-24 Score=164.39 Aligned_cols=225 Identities=13% Similarity=0.111 Sum_probs=173.4
Q ss_pred eeEEecC--CCe--eecc-----CCCcEEEEECCCCCCccccc-ceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCC
Q 021744 71 AKRFANN--TWG--RNNN-----FNNHSNNYRAGNSKNSNINN-RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGD 138 (308)
Q Consensus 71 ~i~~s~~--g~~--~s~~-----~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~ 138 (308)
++.|||= +++ |++. ..|++.|-+++.++-+.... ..-......+++++.. ..++++.||.+++||...
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 5777773 333 3332 35778888886444332222 2223447788888765 338889999999999876
Q ss_pred CceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE-E-c-CCCEEEEEc-CCcE
Q 021744 139 GFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-I-S-EGPWIFIGV-TNFV 212 (308)
Q Consensus 139 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~-~-~-~~~~l~~~~-d~~i 212 (308)
...+++.++.|+..|.++.|++. ...++++|.|++|++|+....+.+.++. +...+... + | ...++++.+ |+++
T Consensus 93 ~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l 172 (311)
T KOG0277|consen 93 PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTL 172 (311)
T ss_pred CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceE
Confidence 66889999999999999999984 4667888999999999999999999998 66665543 3 3 366777655 9999
Q ss_pred EEEEcCCC-ceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeE
Q 021744 213 KAWNTQTN-TDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSL 287 (308)
Q Consensus 213 ~~wd~~~~-~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l 287 (308)
++||++.. +.+.+..|..++.++.|+.- .+++|+.|+.|+.||++.-+ .++.++.+|+-.|+. .|||...-+
T Consensus 173 ~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 173 RLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCcchhhH
Confidence 99999864 45578899999999999865 99999999999999999864 788999999999999 999988777
Q ss_pred EEee--ceEEEEe
Q 021744 288 LGSV--SFIMFIG 298 (308)
Q Consensus 288 ~~s~--s~~i~~~ 298 (308)
++|+ +.+..++
T Consensus 250 LaSasYDmT~riw 262 (311)
T KOG0277|consen 250 LASASYDMTVRIW 262 (311)
T ss_pred hhhccccceEEec
Confidence 6555 4444443
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-22 Score=152.29 Aligned_cols=265 Identities=12% Similarity=0.093 Sum_probs=191.4
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCC------Cccccccc--eeEEecCCCe-eeccCCCcEEEEECC-
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPP------AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAG- 95 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~------~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~- 95 (308)
|.+.|.||..++.|+-....-.. .+--|+ .+..+ ....|.+. |.+|+|+|.. ++|+.|++|++--++
T Consensus 44 g~lyavgsnskt~ric~yp~l~~--~r~~he-a~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~ 120 (350)
T KOG0641|consen 44 GGLYAVGSNSKTFRICAYPALID--LRHAHE-AAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNA 120 (350)
T ss_pred CceEEeccCCceEEEEccccccC--cccccc-cccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccc
Confidence 55789999999999864322100 000011 11111 12356666 9999999999 999999999997664
Q ss_pred -CCCCccc--ccceeeeeeeeeeeecCC----ce-EE-eeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE
Q 021744 96 -NSKNSNI--NNRAVIKTDILCRNWVQG----NC-MY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY 166 (308)
Q Consensus 96 -~~~~~~~--~~~~~~~~~~~~~~~~~~----~~-~~-g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 166 (308)
+.+.... ....|...+..++|..+. .+ ++ |..|-.|++-|..++ +..+.+.+|++.|.++--. ++-+++
T Consensus 121 dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilalysw-n~~m~~ 198 (350)
T KOG0641|consen 121 DTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILALYSW-NGAMFA 198 (350)
T ss_pred ccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEEEEe-cCcEEE
Confidence 2222222 335566778888887654 22 33 446788899999998 8899999999999887422 477999
Q ss_pred EeeCCCcEEEEeCCCCeEEEEEe---CC-----CeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEE
Q 021744 167 SGSKDETVRVWDCASGQCAGVIN---LG-----GEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYA 234 (308)
Q Consensus 167 s~s~dg~v~~wd~~~~~~~~~~~---~~-----~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~ 234 (308)
+|+.|.+|++||++-..++.++. +. ..+.++ -|.|++|++|. |....+||++.+..+ .+..|...|.+
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~ 278 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRC 278 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeE
Confidence 99999999999999998888876 22 234444 47899999998 889999999999888 88899999999
Q ss_pred EEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCe-EEEEecCCCeEEE-eeceEE
Q 021744 235 MAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSN-RAHFSRDVTSLLG-SVSFIM 295 (308)
Q Consensus 235 ~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v-~~~~s~d~~~l~~-s~s~~i 295 (308)
+.|+|. ++++++.|..|++-|+...-...-++.....|...+ .+.|.|+.--+++ |.+.+.
T Consensus 279 vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 279 VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceE
Confidence 999999 999999999999999986322112333344666654 4499998765554 444333
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.1e-24 Score=170.33 Aligned_cols=246 Identities=13% Similarity=0.178 Sum_probs=192.9
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECC----CCC
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAG----NSK 98 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~----~~~ 98 (308)
.+.+.++|.|.+.++|...++ .....+.||.+. +|.|++.+.+ ++++.|++-.||... .++
T Consensus 160 qpi~gtASADhTA~iWs~Esg------------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~ 227 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESG------------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPS 227 (481)
T ss_pred CcceeecccccceeEEeeccc------------cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCC
Confidence 458999999999999998887 345567899999 9999999999 999999999999731 111
Q ss_pred --------------------------------Cc---ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCcee
Q 021744 99 --------------------------------NS---NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKL 142 (308)
Q Consensus 99 --------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~ 142 (308)
.+ .....+|...+.+|.|...+.. ++++.|.+..+||++++ +.
T Consensus 228 ~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-e~ 306 (481)
T KOG0300|consen 228 NNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG-EV 306 (481)
T ss_pred CCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC-ce
Confidence 00 1122345555667777777754 99999999999999999 89
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC-CeEEEEEe-CCCeeEEE-EcCCCEEEEEc-CCcEEEEEcC
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVIN-LGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQ 218 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~-~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~ 218 (308)
+..+.||....+.++-+|..+++++.+.|.+.++||++. -+.+..|+ |...+++. +..+..+++|+ |.+|++||++
T Consensus 307 v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 307 VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLR 386 (481)
T ss_pred eccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeec
Confidence 999999999999999999999999999999999999984 34566676 77777766 55567777777 7899999999
Q ss_pred CCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCC
Q 021744 219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDV 284 (308)
Q Consensus 219 ~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~ 284 (308)
..... ......++++.++++.. +++.-.+++.|++||++......-+...-.+|..-|+| +|..+.
T Consensus 387 NMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 387 NMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred cccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 87543 22234668888999877 88888999999999998753211122234588888998 998654
No 92
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=4.1e-25 Score=182.71 Aligned_cols=234 Identities=13% Similarity=0.172 Sum_probs=185.0
Q ss_pred Cccccccc--eeEEec-CCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744 63 AATANGAA--AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG 137 (308)
Q Consensus 63 ~~~gh~~~--~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~ 137 (308)
.+.||+.. ++.|.| .+.+ ++++.|+.|+||++-..........+|...|..++|+.+|.. ++++.|+.|++||++
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence 44588888 899999 5666 999999999999996644444566789999999999999965 999999999999999
Q ss_pred CCceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcE
Q 021744 138 DGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFV 212 (308)
Q Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i 212 (308)
++ +.+..+. -...++++.|+|++ +.+++|+.|+.|+.||+++++.++++. +-+.+..+ .++++.+++++ |+++
T Consensus 289 TG-~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 289 TG-QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV 366 (503)
T ss_pred cc-eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence 99 7777776 34677999999998 788999999999999999999888887 55666554 57888888766 8899
Q ss_pred EEEEcCCCceeeee--CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC---CeEEEEecCCC
Q 021744 213 KAWNTQTNTDLSLS--GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD---SNRAHFSRDVT 285 (308)
Q Consensus 213 ~~wd~~~~~~~~~~--~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~v~~~~s~d~~ 285 (308)
++|+.+..-.+.+. .+.-...++..+|+ ++++-+.|+.|.+|.+...-. ....+.+++|.. .+.+.|||||+
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r-~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR-LNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc-cCHhhhhcceeccCceeeEEEcCCCC
Confidence 99999988766322 22234567888888 999999999999999765422 233455677754 34449999999
Q ss_pred eEEEe-eceEEEEee
Q 021744 286 SLLGS-VSFIMFIGQ 299 (308)
Q Consensus 286 ~l~~s-~s~~i~~~~ 299 (308)
+|+++ ++..++++.
T Consensus 446 ~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWD 460 (503)
T ss_pred eEEeecCCccEEEee
Confidence 99854 466666655
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1e-23 Score=185.20 Aligned_cols=191 Identities=8% Similarity=0.147 Sum_probs=154.7
Q ss_pred ccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCC
Q 021744 64 ATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDG 139 (308)
Q Consensus 64 ~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~ 139 (308)
+.||.+. .+.||.++-+++++.|+|||||++...+.+ ....|...|.+++|+|-. ++ ++|+-|+.||||++...
T Consensus 365 f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL--~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~ 442 (712)
T KOG0283|consen 365 FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL--KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK 442 (712)
T ss_pred hhccchhheecccccCCeeEeccccccEEeecCCCccee--eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcC
Confidence 3499888 899999887799999999999999877766 566788889999999966 33 99999999999999987
Q ss_pred ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---------CCCeeEEE--Ec--CCCEEEE
Q 021744 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---------LGGEVGCM--IS--EGPWIFI 206 (308)
Q Consensus 140 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---------~~~~v~~~--~~--~~~~l~~ 206 (308)
+...-.. -.+-|++++|.|+|+..+.|+.+|.+++|+.+..+....+. ....|+.+ ++ ..+.|++
T Consensus 443 -~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 443 -KVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT 520 (712)
T ss_pred -eeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe
Confidence 4444333 44899999999999999999999999999999877776554 12357766 22 2346667
Q ss_pred EcCCcEEEEEcCCCcee-eeeCCCC--CEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744 207 GVTNFVKAWNTQTNTDL-SLSGPVG--QVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 207 ~~d~~i~~wd~~~~~~~-~~~~~~~--~v~~~~~~~~--~l~~g~~dg~i~iwd~~~ 258 (308)
+.|..|+|||++...++ .++++.. .-....|+.| +|+++++|..|++|++..
T Consensus 521 SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 77999999999888777 6665432 3456778888 999999999999999854
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.3e-24 Score=174.38 Aligned_cols=233 Identities=16% Similarity=0.237 Sum_probs=188.9
Q ss_pred ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc----cc-------------ccceeeeeeeeeeeecCCce-EE
Q 021744 66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS----NI-------------NNRAVIKTDILCRNWVQGNC-MY 124 (308)
Q Consensus 66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~-~~ 124 (308)
.|.-+ +++++|+.++ ++++.|++|.-|++.+++.. .. ....|.+.+.+++.++++.+ ++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 45555 8999999999 99999999999999776522 00 11256666899999999988 99
Q ss_pred eeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEE--cCC
Q 021744 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMI--SEG 201 (308)
Q Consensus 125 g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~--~~~ 201 (308)
|+.|..|.||+.++. +.++.+++|.+.|.+++|-.....+++++.|++|++|++.....+.++. |+..+..+. ..+
T Consensus 220 gg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re 298 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE 298 (479)
T ss_pred cCCCceEEEecCccc-chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc
Confidence 999999999999999 8999999999999999999888889999999999999999877776665 888888773 456
Q ss_pred CEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceecc-c-------
Q 021744 202 PWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK-V------- 271 (308)
Q Consensus 202 ~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~------- 271 (308)
+.+.+|. |.++++|++.....+.+.++.+.+-|++|-.+ .|++|+.+|.|.+|++... +++.+.. .
T Consensus 299 R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KK----kplf~~~~AHgv~~~~ 374 (479)
T KOG0299|consen 299 RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKK----KPLFTSRLAHGVIPEL 374 (479)
T ss_pred ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeeccc----CceeEeeccccccCCc
Confidence 6777775 99999999966666688899999999999888 9999999999999999987 4444332 1
Q ss_pred ----cCCCeEE-EEecCCCeEEE-eeceEEEEeecCce
Q 021744 272 ----HTDSNRA-HFSRDVTSLLG-SVSFIMFIGQNNKG 303 (308)
Q Consensus 272 ----~~~~v~~-~~s~d~~~l~~-s~s~~i~~~~~~~~ 303 (308)
+..+|++ +..|...++++ |.+..+-+|+...+
T Consensus 375 ~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 375 DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 1237888 88898888874 44555555555554
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=4.9e-23 Score=168.46 Aligned_cols=249 Identities=12% Similarity=0.132 Sum_probs=201.8
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
+.+.||+.|+++-++|.... .....+.||+.. .+.++|+... ++++.|..|+||...... ....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~ 298 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS 298 (506)
T ss_pred CcceecCCCCceEEEecchh------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence 67999999999999998876 345567899888 7889999988 999999999999985543 3346
Q ss_pred cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC--cccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744 104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~ 180 (308)
...|...|..+...|.|.+ ++++.|+..-..|++++. .+..... ..-.+++.+|+|||..+.+|..|+.|++||+.
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 6788888999999999988 899999999999999994 4333321 22358999999999999999999999999999
Q ss_pred CCeEEEEEe-CCCeeEEE-E-cCCCEEEEEc-CCcEEEEEcCCCcee-eeeC-CCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744 181 SGQCAGVIN-LGGEVGCM-I-SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG-PVGQVYAMAVGND--LLFAGTQDGAIL 252 (308)
Q Consensus 181 ~~~~~~~~~-~~~~v~~~-~-~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~-~~~~v~~~~~~~~--~l~~g~~dg~i~ 252 (308)
+...+..|. |.+++..+ + -+|-+|+++. |+.|++||+|..+.. ++.- ...++.++.|.+. +|+.++.|=.|+
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence 999888888 88899887 3 4577888766 778999999988765 3332 2337999999887 888887775666
Q ss_pred EEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 253 AWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
+++-.+. .|..+..+..|.+..+. .|....++++.++
T Consensus 458 ~~~k~~k--~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 458 ICKKKTK--SWTEIKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred EEecccc--cceeeehhhhcccccceeeecccceEEeecc
Confidence 6654444 36888899999988888 9999888888554
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=6.5e-24 Score=166.97 Aligned_cols=270 Identities=14% Similarity=0.185 Sum_probs=194.0
Q ss_pred CCCCCceEEecCCCeEEEeecCCC-CC-CCCCcccc----cCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEE
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKC-NR-FPCPYLHR----ELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYR 93 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~-~~-~~~~~~~~----~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd 93 (308)
+-.|.++||||.|..|++.|+... .+ .+...... ..|.-..+--|... ++.|+|...+ ++|+.|++|+++|
T Consensus 121 s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFD 200 (430)
T KOG0640|consen 121 SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFD 200 (430)
T ss_pred CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEe
Confidence 445889999999999999997742 01 11111111 12333344467666 8999999999 9999999999999
Q ss_pred CCCCCCccc-ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeE---eeCcccceEEEEEeCCCCEEEEe
Q 021744 94 AGNSKNSNI-NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQ---LEGHQKVVSGITLPSGSDKLYSG 168 (308)
Q Consensus 94 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~ 168 (308)
+........ ........+.++.|.|.|.+ +.|.+..++++||+++- +.... -.+|++.|+++.+++.+++-+++
T Consensus 201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~~V~Ys~t~~lYvTa 279 (430)
T KOG0640|consen 201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAITQVRYSSTGSLYVTA 279 (430)
T ss_pred cccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCcccccccceeEEEecCCccEEEEe
Confidence 953321110 11122334899999999988 77888899999999988 44332 24699999999999999999999
Q ss_pred eCCCcEEEEeCCCCeEEEEEe--CC-CeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCC-----CCCEEEEE
Q 021744 169 SKDETVRVWDCASGQCAGVIN--LG-GEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGP-----VGQVYAMA 236 (308)
Q Consensus 169 s~dg~v~~wd~~~~~~~~~~~--~~-~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~-----~~~v~~~~ 236 (308)
|.||.|++||--+++++.++. |+ ..+.+. ..+++++++++ |..+++|.+.++..+ .+.+- ..--+...
T Consensus 280 SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv 359 (430)
T KOG0640|consen 280 SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV 359 (430)
T ss_pred ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh
Confidence 999999999999999999987 43 344443 47899999765 999999999999887 44432 11223445
Q ss_pred EeCC--EEEEEc-CCCeEEEEEcCCCCcccccceec-cccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744 237 VGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASL-KVHTDSNRA-HFSRDVTSLLGSV-SFIMFI 297 (308)
Q Consensus 237 ~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~ 297 (308)
|+.. +++.-. ..+.+.-||.++. ..+..+ .+|.+.++. .-||.+.-+++++ +...-.
T Consensus 360 FNhtEdyVl~pDEas~slcsWdaRta----dr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 360 FNHTEDYVLFPDEASNSLCSWDARTA----DRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred hcCccceEEccccccCceeeccccch----hhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 5544 554433 3567899999987 333333 389999999 9999998888666 444433
No 97
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=172.75 Aligned_cols=231 Identities=15% Similarity=0.171 Sum_probs=177.7
Q ss_pred eeEEecCCCe--eeccCCCcEEEEECCCCCCcc---------cccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcC
Q 021744 71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSN---------INNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVG 137 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~ 137 (308)
.+++-|.... |+.+..+.|.|||........ ..+.+|.+.-..+.|++.. ..++++.|+.|.+||+.
T Consensus 129 RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 129 RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred hhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence 5667777665 888999999999996432111 1346677655556666654 55999999999999997
Q ss_pred CCc------eeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCC--CeEEEEEe-CCCeeEEEE---cCCCEE
Q 021744 138 DGF------KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCAS--GQCAGVIN-LGGEVGCMI---SEGPWI 204 (308)
Q Consensus 138 ~~~------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~--~~~~~~~~-~~~~v~~~~---~~~~~l 204 (308)
... .+...+.+|++.|..++|++- ..++++++.|+.+.|||+++ .++..... |..++.|+. .++.+|
T Consensus 209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il 288 (422)
T KOG0264|consen 209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL 288 (422)
T ss_pred ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence 442 345678899999999999984 46789999999999999995 44444444 788898884 246677
Q ss_pred EEEc-CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCc----------cccccee
Q 021744 205 FIGV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN----------CFEPAAS 268 (308)
Q Consensus 205 ~~~~-d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~----------~~~~~~~ 268 (308)
|+|+ |++|.+||+|..... ++.+|...|.++.|+|. .||+++.|+.+.+||+..-.. -.+++..
T Consensus 289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~ 368 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI 368 (422)
T ss_pred EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE
Confidence 7777 999999999986543 89999999999999998 999999999999999864211 0134455
Q ss_pred ccccCCCeEE-EEecCCCeEEEee--ceEEEEeecC
Q 021744 269 LKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQNN 301 (308)
Q Consensus 269 ~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~~~ 301 (308)
..+|...|.. .|+|...++++|. +..+.+|+-.
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 6689999999 9999999999776 6666666544
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=8.1e-25 Score=177.75 Aligned_cols=234 Identities=17% Similarity=0.219 Sum_probs=187.5
Q ss_pred cccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC-cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC
Q 021744 65 TANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG 139 (308)
Q Consensus 65 ~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~ 139 (308)
..|.+. .+.|-++... ++|+.|..|++|++...+. ....+.+..+.+..+.|-+++.. ++++.|+.+++|++...
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 355555 7889898777 9999999999999965542 22234445556888999988866 88999999999999998
Q ss_pred ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcC
Q 021744 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQ 218 (308)
Q Consensus 140 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~ 218 (308)
+...+|.||++.|+++.|......+++|+.|.+|++||+....+.+++-....+..+......+++|. |++|++||.+
T Consensus 252 -r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 252 -RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred -hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEecc
Confidence 88999999999999999987766699999999999999999999888876666666655566677777 9999999999
Q ss_pred CCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc----CCCeEE-EEecCCCeEE-E
Q 021744 219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH----TDSNRA-HFSRDVTSLL-G 289 (308)
Q Consensus 219 ~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~-~~s~d~~~l~-~ 289 (308)
+..+. .... .+.|+++..+++ .+++++.|.++.+.|+++. +....+... ....+. .|||++.|++ +
T Consensus 331 s~~~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~----eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 331 SADKTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK----EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred CCceeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccc----cEEEEeeccccccccccceeEECCCCceeeec
Confidence 99888 4444 449999999999 7888899999999999986 444444421 123444 9999999998 5
Q ss_pred eeceEEEEeecCcee
Q 021744 290 SVSFIMFIGQNNKGV 304 (308)
Q Consensus 290 s~s~~i~~~~~~~~~ 304 (308)
|++..+|+|....+.
T Consensus 406 S~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGK 420 (459)
T ss_pred cCCCcEEEEEccCce
Confidence 557888888765554
No 99
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-24 Score=188.33 Aligned_cols=225 Identities=15% Similarity=0.173 Sum_probs=180.1
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~ 100 (308)
-.++|||++..|.|-+||.+...| .++...+..|+.. ++.|++...+ ++|+.||+|++||+...+..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~r---------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIR---------NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhhheeecCCCcEEEEecCcccc---------chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 357899999999999999987422 3333445667766 8999987766 99999999999999755443
Q ss_pred ccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744 101 NINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (308)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd 178 (308)
. ........++.+.|+|.. .++++.+.|.+++||++...+....+.+|.++|.++.|+|+..+||||+.|++|+|||
T Consensus 170 ~-t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 170 S-TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred c-cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 2 223344558899999875 3488889999999999988778889999999999999999999999999999999999
Q ss_pred CCCCe--EEEEEeCCCeeEEE-E-cCCC-EEEEEc---CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEE
Q 021744 179 CASGQ--CAGVINLGGEVGCM-I-SEGP-WIFIGV---TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAG 245 (308)
Q Consensus 179 ~~~~~--~~~~~~~~~~v~~~-~-~~~~-~l~~~~---d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g 245 (308)
+.+.+ .+.+++...++.++ + |... .|++++ |-.|+|||++..-.. ++..|.+.++.++|... .+.++
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~ 328 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC 328 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEee
Confidence 98654 55666677888887 4 4444 455544 779999999976544 78899999999999763 89999
Q ss_pred cCCCeEEEEEcCCC
Q 021744 246 TQDGAILAWKFNVT 259 (308)
Q Consensus 246 ~~dg~i~iwd~~~~ 259 (308)
+.||.|..-.+++.
T Consensus 329 sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 329 SKDGTVLQHLFKNA 342 (839)
T ss_pred cCccHHHHhhhhcc
Confidence 99999887766654
No 100
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.1e-25 Score=191.46 Aligned_cols=242 Identities=18% Similarity=0.285 Sum_probs=201.0
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
........+..+++|+.... ..|... ++..-..++. ++|+.|..+-+|.+.....+. .
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~~------------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-S 65 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTREF------------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-S 65 (825)
T ss_pred cccceeeeeeccccccchhh------------------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-e
Confidence 34555666778888987654 122222 3444444556 999999999999986554432 4
Q ss_pred cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744 104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~ 182 (308)
..+|...+.++.|.+.... +.|..+|+|++||+.+. +.+++|.+|...+.++.|+|-+.+.++|+.|..+++||++..
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhh-hhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 6788889999999998866 88899999999999998 889999999999999999999999999999999999999988
Q ss_pred eEEEEEe-CCCeeEE--EEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744 183 QCAGVIN-LGGEVGC--MISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (308)
Q Consensus 183 ~~~~~~~-~~~~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd 255 (308)
.+...+. |...+.+ +.|+|++++.+. |.++++||+..++.. .+..|+..+.++.|+|. ++++|+.|++|++||
T Consensus 145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD 224 (825)
T ss_pred CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeec
Confidence 8888888 4444444 369999999887 799999999999988 88999999999999998 889999999999999
Q ss_pred cCCCCcccccceeccccCCCeEE-EEecCCCeEEEeec
Q 021744 256 FNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVS 292 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s 292 (308)
+++- +.+.........|.+ +|+|++..++.+..
T Consensus 225 letf----e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 225 LETF----EVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred ccee----EEeeccCCccCCceeeeecCCceeeecCch
Confidence 9984 777777777888999 99999988876653
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-23 Score=160.38 Aligned_cols=236 Identities=12% Similarity=0.066 Sum_probs=167.4
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEe-c-CCCe-eeccCCCcEEEEECCCCCCc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFA-N-NTWG-RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s-~-~g~~-~s~~~d~~i~vwd~~~~~~~ 100 (308)
|.+|||+|+|++|||+....... ..+...+.||+++ .++|. | -|.+ |++++|+.|.||.-++++..
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~---------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~ 93 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQ---------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT 93 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCC---------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh
Confidence 56799999999999999876510 1344568899999 66664 4 5777 99999999999999877543
Q ss_pred cc-ccceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCC--ceeeeEeeCcccceEEEEEeCC---CCEEEEeeCC
Q 021744 101 NI-NNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPSG---SDKLYSGSKD 171 (308)
Q Consensus 101 ~~-~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~--~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~s~d 171 (308)
.. ....|...+.++++-|.+ .++.++.||.|.|.+.++. ....+....|+-.|++++|.|. |..+-.+..+
T Consensus 94 k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~ 173 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAA 173 (299)
T ss_pred hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccc
Confidence 22 335677779999999887 3388999999999988754 2334456789999999999985 3111100000
Q ss_pred CcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCC------E
Q 021744 172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND------L 241 (308)
Q Consensus 172 g~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~------~ 241 (308)
.-+.|++|. |+.|++|+...++-+ ++.+|.+.|+.++|.|. +
T Consensus 174 ----------------------------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~ 225 (299)
T KOG1332|consen 174 ----------------------------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST 225 (299)
T ss_pred ----------------------------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence 012233332 555666655554322 57899999999999997 8
Q ss_pred EEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 242 LFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 242 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
||++++||+|.||-.+.... ......++.....+.. .||..|..|++++ +..+.++.
T Consensus 226 iAS~SqDg~viIwt~~~e~e-~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 226 IASCSQDGTVIIWTKDEEYE-PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred eEEecCCCcEEEEEecCccC-cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 99999999999998874321 1233445556778888 9999999999776 54444443
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=5.9e-23 Score=180.04 Aligned_cols=282 Identities=14% Similarity=0.143 Sum_probs=208.9
Q ss_pred cCCCCCCCCCCceEEecCCCeEEEeecCCCCCC------------------CCCcccccCCCC--------------C--
Q 021744 17 GGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRF------------------PCPYLHRELPLP--------------P-- 62 (308)
Q Consensus 17 ~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~------------------~~~~~~~~~~~~--------------~-- 62 (308)
...+...||.+++|+++..|.+.+||....... .+|.+...-+-. .
T Consensus 248 tslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L 327 (910)
T KOG1539|consen 248 TSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL 327 (910)
T ss_pred eEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe
Confidence 444667788999999999999999998764221 111111100000 0
Q ss_pred -Cccccccc--eeEEe-cCCCe-eeccCCCcEEEEECCC-------CC--------------------------------
Q 021744 63 -AATANGAA--AKRFA-NNTWG-RNNNFNNHSNNYRAGN-------SK-------------------------------- 98 (308)
Q Consensus 63 -~~~gh~~~--~i~~s-~~g~~-~s~~~d~~i~vwd~~~-------~~-------------------------------- 98 (308)
.-.||..+ +++|. .+|.. .+++.|++.+.+++.. ++
T Consensus 328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R 407 (910)
T KOG1539|consen 328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR 407 (910)
T ss_pred eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence 11277777 88887 45555 8999999888887620 00
Q ss_pred -------------------------Ccccccceee------eeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744 99 -------------------------NSNINNRAVI------KTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQL 146 (308)
Q Consensus 99 -------------------------~~~~~~~~~~------~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~ 146 (308)
..+.....+. ..+.+++.++.|++ +.|...|.|-+|+++++ -....+
T Consensus 408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-i~r~sf 486 (910)
T KOG1539|consen 408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-IHRKSF 486 (910)
T ss_pred hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-eeeccc
Confidence 0000000011 22566777788877 67889999999999999 566666
Q ss_pred ---eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE--cCCCEEEEE-cCCcEEEEEcCCC
Q 021744 147 ---EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTN 220 (308)
Q Consensus 147 ---~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~-~d~~i~~wd~~~~ 220 (308)
..|..+|+.++.+.-++.+++++.+|.+++||......+..+.....+.++. .....++++ .|-.|.++|..+.
T Consensus 487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 5799999999999988999999999999999999999888888777776663 334455544 4779999999998
Q ss_pred cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceE
Q 021744 221 TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFI 294 (308)
Q Consensus 221 ~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~ 294 (308)
+.. .+.+|.+.|++++|||| +|++++.|++|++||+.++ .++-.+.- ..++.. .|||+|++|++.. -..
T Consensus 567 kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~----~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 567 KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG----TLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc----ceeeeEec-CCcceeeEECCCCCEEEEEEecCce
Confidence 888 78899999999999999 9999999999999999997 66666654 344555 9999999999766 488
Q ss_pred EEEeecCcee
Q 021744 295 MFIGQNNKGV 304 (308)
Q Consensus 295 i~~~~~~~~~ 304 (308)
||+|.|.--+
T Consensus 642 IylWsNkslF 651 (910)
T KOG1539|consen 642 IYLWSNKSLF 651 (910)
T ss_pred EEEEEchhHh
Confidence 9998875443
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.5e-23 Score=170.91 Aligned_cols=229 Identities=14% Similarity=0.163 Sum_probs=180.2
Q ss_pred cccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCce
Q 021744 65 TANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK 141 (308)
Q Consensus 65 ~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~ 141 (308)
..|... .++|+|...+ +.....-.+.||+..+..... ....+++.+..+.|-.||.. +.|+..|.|+|+|+.+. .
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k-~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~ 101 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK-TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-V 101 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecchhhhhh-hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-H
Confidence 344444 8999999998 555556679999986554331 23456667899999999987 78889999999997775 7
Q ss_pred eeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--Ec-CCCEEEEEc-CCcEEEE
Q 021744 142 LLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--IS-EGPWIFIGV-TNFVKAW 215 (308)
Q Consensus 142 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~-~~~~l~~~~-d~~i~~w 215 (308)
.++.+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+......+. |..-+.|. .| ++.++++|+ ||.|++|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 889999999999999999965 667899999999999999888644454 77888876 34 345677877 9999999
Q ss_pred EcCCC-ceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 216 NTQTN-TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 216 d~~~~-~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
|++.. ..+.-..|..+|.++.+.|. .+++++ ...|++||+.++. +.+..+..|...|+| ++..++..|++++
T Consensus 182 DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~---qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 182 DTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGG---QLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred EeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCc---eehhhhhcccceEEEEEeecCCceEeecc
Confidence 99988 44455578999999999998 666655 4589999999763 667777779999999 9999998888666
Q ss_pred -ceEEEEee
Q 021744 292 -SFIMFIGQ 299 (308)
Q Consensus 292 -s~~i~~~~ 299 (308)
+..+-+..
T Consensus 258 LD~~VKVfd 266 (487)
T KOG0310|consen 258 LDRHVKVFD 266 (487)
T ss_pred cccceEEEE
Confidence 54444433
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-22 Score=156.57 Aligned_cols=220 Identities=12% Similarity=0.118 Sum_probs=182.9
Q ss_pred CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744 62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG 137 (308)
Q Consensus 62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~ 137 (308)
.-++||+.+ .+.++.+|.+ ++++.|.+..||-..+++.++ ...+|...+++|...-+... ++|+.|.++++||++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-eecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 345788888 8999999999 999999999999887777664 56789999999998777654 999999999999999
Q ss_pred CCceeeeEeeCcccceEEEEEeCCCCEEEEeeC-----CCcEEEEeCC-------CCeEEEEEe-CCCeeEE-EE-cCCC
Q 021744 138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----DETVRVWDCA-------SGQCAGVIN-LGGEVGC-MI-SEGP 202 (308)
Q Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----dg~v~~wd~~-------~~~~~~~~~-~~~~v~~-~~-~~~~ 202 (308)
++ +.+..++ -..+|..+.|++++++++.+.. .+.|.++|++ ..++...+. .+..++. ++ +-++
T Consensus 83 tG-k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TG-KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CC-cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 99 7888877 5689999999999998877654 4679999998 355566666 4444443 34 6789
Q ss_pred EEEEEc-CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeE
Q 021744 203 WIFIGV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNR 277 (308)
Q Consensus 203 ~l~~~~-d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 277 (308)
+|++|. +|.|..||+++++.. ....|...|+.|.++++ ++++++.|.+-++||+.+- +.++++. -..+|+
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty~-te~PvN 235 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTYT-TERPVN 235 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce----eeEEEee-eccccc
Confidence 999987 999999999998766 55678999999999999 9999999999999999995 7777776 456888
Q ss_pred E-EEecCCCeEEE
Q 021744 278 A-HFSRDVTSLLG 289 (308)
Q Consensus 278 ~-~~s~d~~~l~~ 289 (308)
+ +++|-...++.
T Consensus 236 ~aaisP~~d~Vil 248 (327)
T KOG0643|consen 236 TAAISPLLDHVIL 248 (327)
T ss_pred ceecccccceEEe
Confidence 8 99997776663
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.6e-21 Score=163.91 Aligned_cols=252 Identities=8% Similarity=0.007 Sum_probs=173.4
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCcccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
.+++|++.|+.+++||..+++ .. ....++... .++|+|++.. ++++.++.|++||..+++.....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~-----------~~-~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLE-----------VT-RTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL 69 (300)
T ss_pred cEEEEecCCCEEEEEECCCCc-----------eE-EEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec
Confidence 568999999999999987761 11 111222223 6899999986 67778999999999877654221
Q ss_pred cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC-cEEEEeCC
Q 021744 104 NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-TVRVWDCA 180 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~v~~wd~~ 180 (308)
.. ...+..+.+++++.. +++..++.|++||+.+. +.+..+.. ...+.+++|+|++.++++++.++ .+.+||.+
T Consensus 70 ~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 70 PS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETR-KVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred cC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 11 122456778888865 44557899999999987 66666653 34568899999999999888775 56778999
Q ss_pred CCeEEEEEeCCCeeE--EEEcCCCEEEEE-c-CCcEEEEEcCCCcee-eeeCC-------CCCEEEEEEeCC--E-EEEE
Q 021744 181 SGQCAGVINLGGEVG--CMISEGPWIFIG-V-TNFVKAWNTQTNTDL-SLSGP-------VGQVYAMAVGND--L-LFAG 245 (308)
Q Consensus 181 ~~~~~~~~~~~~~v~--~~~~~~~~l~~~-~-d~~i~~wd~~~~~~~-~~~~~-------~~~v~~~~~~~~--~-l~~g 245 (308)
+++.+..+....... .+.+++++++++ . ++.|++||+++++.. .+..+ ......++|+|+ + +++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 888776655333333 346788887644 3 889999999998765 33211 112356889998 4 4445
Q ss_pred cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEee
Q 021744 246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQ 299 (308)
Q Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~ 299 (308)
..++.|.+||+.+. +.+..+. +...+.+ +|+|+|++|+++. +..|.++.
T Consensus 226 ~~~~~i~v~d~~~~----~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 226 GPANRVAVVDAKTY----EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCCCeEEEEECCCC----cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 56778999999875 4443332 3446777 9999999988643 44444444
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.6e-23 Score=161.52 Aligned_cols=218 Identities=13% Similarity=0.185 Sum_probs=174.7
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC--e-eeccCCCcEEEEECCCCCC
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW--G-RNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~--~-~s~~~d~~i~vwd~~~~~~ 99 (308)
.++++||||.|.+|++||..+. .. ...+..|.+. ++.|.+.-. . ++|+.||.|.+|+...-+.
T Consensus 52 s~~~~aSGssDetI~IYDm~k~-----------~q-lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~ 119 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKR-----------KQ-LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL 119 (362)
T ss_pred cceeEeccCCCCcEEEEeccch-----------hh-hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence 4789999999999999998876 22 2334566666 788887765 4 9999999999999976633
Q ss_pred cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee-CcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744 100 SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (308)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w 177 (308)
...+++|.+.|..++..|.+.. ++-+.|+.+++||+-+++ .-..+. .+.. +.+.|+|.|.+++.++.+ .|-+|
T Consensus 120 -~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr-~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~~-~i~i~ 194 (362)
T KOG0294|consen 120 -LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR-VAFVLNLKNKA--TLVSWSPQGDHFVVSGRN-KIDIY 194 (362)
T ss_pred -eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc-cceeeccCCcc--eeeEEcCCCCEEEEEecc-EEEEE
Confidence 3467888888999999999987 888999999999998883 322222 2333 349999999998888875 49999
Q ss_pred eCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC----EEEEEcCCCe
Q 021744 178 DCASGQCAGVINLGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND----LLFAGTQDGA 250 (308)
Q Consensus 178 d~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~----~l~~g~~dg~ 250 (308)
.+.+......+..+..+.|+ +-++..|++|. ++.|.+||.....+. .+.+|+.+|.++.+-.+ +|++++.||.
T Consensus 195 q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 195 QLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred ecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence 99988777777766666665 56777888776 779999999987777 88999999999996433 9999999999
Q ss_pred EEEEEcCCC
Q 021744 251 ILAWKFNVT 259 (308)
Q Consensus 251 i~iwd~~~~ 259 (308)
|++||++..
T Consensus 275 I~vWd~~~~ 283 (362)
T KOG0294|consen 275 IKVWDIDME 283 (362)
T ss_pred EEEEEcccc
Confidence 999999875
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=2.8e-23 Score=163.43 Aligned_cols=200 Identities=16% Similarity=0.219 Sum_probs=163.5
Q ss_pred cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC------------C-----ceeeeEeeCcccceEEEEEeCCCCEE
Q 021744 104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD------------G-----FKLLTQLEGHQKVVSGITLPSGSDKL 165 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~------------~-----~~~~~~~~~h~~~v~~~~~~~~~~~l 165 (308)
...|+...++.+|+++|.+ ++|+.|..|+|.|++. + ...++++..|.++|+++.|+|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 3567777899999999987 8999999999999861 0 14578888999999999999999999
Q ss_pred EEeeCCCcEEEEeCCCCe---EEEEEeCCCeeEEE--EcCCCEEEEEcCC-cEEEEEcCCCcee----eeeCCCCCEEEE
Q 021744 166 YSGSKDETVRVWDCASGQ---CAGVINLGGEVGCM--ISEGPWIFIGVTN-FVKAWNTQTNTDL----SLSGPVGQVYAM 235 (308)
Q Consensus 166 ~s~s~dg~v~~wd~~~~~---~~~~~~~~~~v~~~--~~~~~~l~~~~d~-~i~~wd~~~~~~~----~~~~~~~~v~~~ 235 (308)
++++.|++|+++|+.... ..+.++...++.++ .|.|.+|++|.|. ++++||+++.++. .-.+|.+.|+++
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 999999999999998643 33445566677776 4889999999965 9999999999887 245789999999
Q ss_pred EEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc-ccCC-CeEE-EEecCCCeEEEee-c--eEEEEeecCceeEEe
Q 021744 236 AVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-VHTD-SNRA-HFSRDVTSLLGSV-S--FIMFIGQNNKGVVCY 307 (308)
Q Consensus 236 ~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~-~v~~-~~s~d~~~l~~s~-s--~~i~~~~~~~~~~~~ 307 (308)
.+++. +.++++.||.|++||--+. +++.++. .|.+ .|++ .|+.+|+|+++|+ + +.+|-...+.-++-|
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred EecCCccEEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 99998 8899999999999998876 8888886 4554 5666 9999999999888 4 444545556555544
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-23 Score=179.25 Aligned_cols=218 Identities=16% Similarity=0.203 Sum_probs=171.3
Q ss_pred cCCCe-eeccCCCcEEEEECCCCCC-----cccccceeeeeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCc-eeeeEee
Q 021744 76 NNTWG-RNNNFNNHSNNYRAGNSKN-----SNINNRAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGF-KLLTQLE 147 (308)
Q Consensus 76 ~~g~~-~s~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~-~~~~~~~ 147 (308)
|.+++ +||+.|++|++|++..... -......|..-+..+.....+ ..++++.|-+|++|+..... -.+.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 56677 9999999999999953321 122344555556666666666 55999999999999997652 3567888
Q ss_pred CcccceEEEEE-eCCCCEEEEeeCCCcEEEEeCCCC--eEEEEEe----------CCCeeEEEE--cCCCEEEEEc-CCc
Q 021744 148 GHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASG--QCAGVIN----------LGGEVGCMI--SEGPWIFIGV-TNF 211 (308)
Q Consensus 148 ~h~~~v~~~~~-~~~~~~l~s~s~dg~v~~wd~~~~--~~~~~~~----------~~~~v~~~~--~~~~~l~~~~-d~~ 211 (308)
.|++-|.|+++ -++..+++||+-|+.|.+||++++ +.+..+. +...+.++. +.+..+++|+ .+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 89999999999 778889999999999999999987 3343333 222344443 3455666766 899
Q ss_pred EEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeE
Q 021744 212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSL 287 (308)
Q Consensus 212 i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l 287 (308)
+++||.++.+.+ .+.+|...|..+..++| .+++++.||+|++||+..+ +++.++..|...|++ ..+|+=+.+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf~~v 270 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSFTHV 270 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCcceE
Confidence 999999999877 89999999999999999 9999999999999999987 889999999999999 877776666
Q ss_pred EEee-ceEEEE
Q 021744 288 LGSV-SFIMFI 297 (308)
Q Consensus 288 ~~s~-s~~i~~ 297 (308)
.+++ +..|+.
T Consensus 271 YsG~rd~~i~~ 281 (735)
T KOG0308|consen 271 YSGGRDGNIYR 281 (735)
T ss_pred EecCCCCcEEe
Confidence 6554 555544
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.8e-22 Score=159.52 Aligned_cols=223 Identities=13% Similarity=0.212 Sum_probs=176.1
Q ss_pred CCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744 61 PPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTV 136 (308)
Q Consensus 61 ~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~ 136 (308)
...+.||... .++....... .+++.|.+-+||.++++..+. ...+|.+.+.++.|++.+.+ ++++.|++.+||..
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~-~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA-TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee-eecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 3445677766 5555555567 999999999999999998763 45678889999999999977 89999999999972
Q ss_pred ------CCC---------------------------------ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744 137 ------GDG---------------------------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (308)
Q Consensus 137 ------~~~---------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w 177 (308)
... ..++..|.+|.+.|.+..|...++.+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 110 03455778999999999999999999999999999999
Q ss_pred eCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCce-e-eeeCCCCCEEEEEEeCC-EEEEEcCCCe
Q 021744 178 DCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTD-L-SLSGPVGQVYAMAVGND-LLFAGTQDGA 250 (308)
Q Consensus 178 d~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~-~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~ 250 (308)
|+++++.+..+. |+.+.+-. .|..+++++++ |.+.++||.+..-. + .+.+|.+.|+++.|..+ .+++|++|.+
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrT 379 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRT 379 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCce
Confidence 999999999888 66666644 45666667666 99999999984322 2 78999999999999998 9999999999
Q ss_pred EEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744 251 ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL 288 (308)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~ 288 (308)
|++||+++.. .++.++... .+++- +.+..+..++
T Consensus 380 vKvWdLrNMR---splATIRtd-S~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 380 VKVWDLRNMR---SPLATIRTD-SPANRVAVSKGHPIIA 414 (481)
T ss_pred EEEeeecccc---CcceeeecC-CccceeEeecCCceEE
Confidence 9999999864 566666543 33433 5555554444
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=9.1e-23 Score=175.61 Aligned_cols=233 Identities=17% Similarity=0.198 Sum_probs=181.8
Q ss_pred CCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCccc-ccceeeeeeee-eeeec--CCceEEeeCCCeEEEEE
Q 021744 62 PAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNI-NNRAVIKTDIL-CRNWV--QGNCMYGEKCKFLHSWT 135 (308)
Q Consensus 62 ~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~~g~~d~~i~iwd 135 (308)
..+.||..- .+++.+..-.+++|.|+++++|+-...+.+.. ....+...+.. +++.+ .++.++|+.|.+|.+|.
T Consensus 8 ~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred EEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 345677655 45555555349999999999999876666542 33444444333 45543 34579999999999999
Q ss_pred cCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCc
Q 021744 136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNF 211 (308)
Q Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~ 211 (308)
..+. .++..|++|+..|.+++...++. ++|||.|.++++|-. +++...++ |...+.++ .+++ .+++|+ |.+
T Consensus 88 ~~~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt 162 (745)
T KOG0301|consen 88 LSQA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKT 162 (745)
T ss_pred cCCC-CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcce
Confidence 9998 89999999999999999887776 999999999999965 45555566 88888877 3556 555554 999
Q ss_pred EEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744 212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL 288 (308)
Q Consensus 212 i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~ 288 (308)
|++|.- ++.. ++.+|.+.|+.+++.++ .|++++.||.|++|++.. +.+.++.+|...+.+ +...++..++
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~~~~~~Iv 235 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMALSDGLIV 235 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEecCCCCeEE
Confidence 999975 4444 89999999999999999 999999999999999954 889999999999999 8777777777
Q ss_pred Eee-ceEEEEeecCceeEE
Q 021744 289 GSV-SFIMFIGQNNKGVVC 306 (308)
Q Consensus 289 ~s~-s~~i~~~~~~~~~~~ 306 (308)
+++ +.++-+|.....+.+
T Consensus 236 s~gEDrtlriW~~~e~~q~ 254 (745)
T KOG0301|consen 236 STGEDRTLRIWKKDECVQV 254 (745)
T ss_pred EecCCceEEEeecCceEEE
Confidence 666 777777776654443
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.8e-22 Score=157.58 Aligned_cols=240 Identities=16% Similarity=0.150 Sum_probs=170.5
Q ss_pred CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc---ccceeeeeeeeeeeecCCce--EEeeCCCeEEE
Q 021744 62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI---NNRAVIKTDILCRNWVQGNC--MYGEKCKFLHS 133 (308)
Q Consensus 62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~i 133 (308)
..+.||... +++|+.||++ ||++.|++||||++..-..-.. .....-.....+.|.|+... +..-....+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 456799988 9999999999 9999999999999964321100 00111123667889998754 44446678999
Q ss_pred EEcCCCc--eee---------eEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEEEc
Q 021744 134 WTVGDGF--KLL---------TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMIS 199 (308)
Q Consensus 134 wd~~~~~--~~~---------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~~~ 199 (308)
|-+.... ... .--+.|+-.|..+-....+.+|++++.|..|.+|+++ |+.+..+. ....-..++|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 9875321 000 0112366677777777788999999999999999999 99998887 2334456789
Q ss_pred CCCEEEEEc-CCcEEEEEcC---CCc------eeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcc---cc
Q 021744 200 EGPWIFIGV-TNFVKAWNTQ---TNT------DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC---FE 264 (308)
Q Consensus 200 ~~~~l~~~~-d~~i~~wd~~---~~~------~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~---~~ 264 (308)
+|++++++. .-.|++|..- .++ ...+++|...|..++|+++ .+++.+.||+++|||.+-.... .+
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 999999766 8899999863 222 2278999999999999999 9999999999999997632110 12
Q ss_pred cceecc-----ccCCCeEEEEecCCCeEEEee--ceEEEEeecCc
Q 021744 265 PAASLK-----VHTDSNRAHFSRDVTSLLGSV--SFIMFIGQNNK 302 (308)
Q Consensus 265 ~~~~~~-----~~~~~v~~~~s~d~~~l~~s~--s~~i~~~~~~~ 302 (308)
.+++.. ....+++...+|.|+.|+++. ++.+|.....+
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc
Confidence 222221 234567779999999999766 55555544433
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=2.7e-21 Score=161.18 Aligned_cols=256 Identities=14% Similarity=0.170 Sum_probs=196.3
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEecCCCeeeccCCCcEEEEECCCCCCcccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
++|++.+ .+.+..|+...+. +...+ ..+.+++.. +++|.++|..+||.++|.|.||+..+.+...+.
T Consensus 214 nliit~G-k~H~~Fw~~~~~~------l~k~~---~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~ 283 (626)
T KOG2106|consen 214 NLIITCG-KGHLYFWTLRGGS------LVKRQ---GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQV 283 (626)
T ss_pred cEEEEeC-CceEEEEEccCCc------eEEEe---eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEe
Confidence 3455544 5789999877662 11111 122233333 899999999999999999999999776665555
Q ss_pred cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCc---------------------------------------eeee
Q 021744 104 NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF---------------------------------------KLLT 144 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~---------------------------------------~~~~ 144 (308)
. .|.+.+.+++...+|.+++|+.|..|..||-.-.+ ....
T Consensus 284 ~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 284 H-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred e-ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 5 88888999999999999999999999999932100 0001
Q ss_pred EeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc
Q 021744 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT 221 (308)
Q Consensus 145 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~ 221 (308)
...+|.+..+.++.+|+.+++++++.|+.+++|+ ..+++.+...+.+..|+ .|.| .+++|. .|...+.|.++..
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence 2246888999999999999999999999999999 66777777766666665 4667 888887 9999999999987
Q ss_pred eeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE-eeceEEEE
Q 021744 222 DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG-SVSFIMFI 297 (308)
Q Consensus 222 ~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~-s~s~~i~~ 297 (308)
.+++.....+++++.|+|+ +||.|+.|+.|+||.+.........+.. -+..++.. .||+|++++.+ |.+..|..
T Consensus 440 lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~eiLy 517 (626)
T KOG2106|consen 440 LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK--CSGSPITHLDWSSDSQFLVSNSGDYEILY 517 (626)
T ss_pred eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee--ecCceeEEeeecCCCceEEeccCceEEEE
Confidence 7766555889999999999 9999999999999999876532222223 34488998 99999999994 55777666
Q ss_pred e
Q 021744 298 G 298 (308)
Q Consensus 298 ~ 298 (308)
|
T Consensus 518 W 518 (626)
T KOG2106|consen 518 W 518 (626)
T ss_pred E
Confidence 6
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.5e-22 Score=165.74 Aligned_cols=242 Identities=17% Similarity=0.232 Sum_probs=190.5
Q ss_pred CceEEecC-CCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 27 GLSTADTR-QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 27 ~~~~s~s~-d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
.+++++.. ...+.+|...++.++. .....|.|. .+++-+|+|.+ +.|+..+.|.+|.+.+|..+...
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~-----q~~v~Pg~v-----~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~- 119 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV-----QYIVLPGPV-----HALASSNLGYFLLAGTISGNLYLWELSSGILLNVL- 119 (476)
T ss_pred hheeeecccCccccccccCchhhhh-----hhcccccce-----eeeecCCCceEEEeecccCcEEEEEeccccHHHHH-
Confidence 35555554 4578889888763222 111112211 16888999999 66669999999999999877544
Q ss_pred ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC--------ceeeeEeeCcccceEEEEEeCC--CCEEEEeeCCCc
Q 021744 105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG--------FKLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDET 173 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~--------~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~ 173 (308)
..|=..+.++.|+.++.. ++|+.||.|.+|++.+- .++++.+..|+-+|+++...+. ...++|+|.|.+
T Consensus 120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t 199 (476)
T KOG0646|consen 120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT 199 (476)
T ss_pred HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence 667777999999999977 99999999999997421 2678889999999999998765 367999999999
Q ss_pred EEEEeCCCCeEEEEEeCCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCc-----------------eeeeeCCCC--C
Q 021744 174 VRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNT-----------------DLSLSGPVG--Q 231 (308)
Q Consensus 174 v~~wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~-----------------~~~~~~~~~--~ 231 (308)
+++||+..+..+.++..+..+.++. |.++.+++|. +|.|.+.++.+.. ...+.+|.+ +
T Consensus 200 ~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 200 IKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA 279 (476)
T ss_pred EEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence 9999999999999999888888774 6678888887 9998887764322 125678888 9
Q ss_pred EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC
Q 021744 232 VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD 283 (308)
Q Consensus 232 v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d 283 (308)
|+|++++-| +|++|+.||.|.|||+.+. ++++++....++|+- .+.|-
T Consensus 280 ITcLais~DgtlLlSGd~dg~VcvWdi~S~----Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLSGDEDGKVCVWDIYSK----QCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeEEEEecCccEEEeeCCCCCEEEEecchH----HHHHHHhhhccccceeEeecc
Confidence 999999999 9999999999999999996 888888766677776 77554
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=7.4e-23 Score=163.99 Aligned_cols=251 Identities=8% Similarity=0.060 Sum_probs=178.5
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCccccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
+.+|||+.||.|++||.... .....+..|.+. .|++.. +..++++.|++|+.|.++.. ++. .
T Consensus 80 s~~aSGs~DG~VkiWnlsqR------------~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~-p~~--t 143 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQR------------ECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP-PLH--T 143 (433)
T ss_pred hhhhccccCceEEEEehhhh------------hhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC-cce--e
Confidence 67999999999999998764 233445667766 677766 33399999999999998642 111 0
Q ss_pred ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCe
Q 021744 105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQ 183 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~ 183 (308)
...+..+..+.-.-. ..+.+.....|.|||.... .++.++.-..+.|.++.|+|.. ..|++|..|+.|.+||+++++
T Consensus 144 ilg~s~~~gIdh~~~-~~~FaTcGe~i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~ 221 (433)
T KOG0268|consen 144 ILGKSVYLGIDHHRK-NSVFATCGEQIDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS 221 (433)
T ss_pred eeccccccccccccc-cccccccCceeeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC
Confidence 111111111111111 1123334457999999877 7888888888999999999965 567888899999999999999
Q ss_pred EEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744 184 CAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (308)
Q Consensus 184 ~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~ 256 (308)
++...........+ .|+.-.++++. |..++.||++..+.. ...+|.+.|.+++|+|. -|++||.|.+|+||..
T Consensus 222 Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 222 PLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred ccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence 99887754444433 46333444565 889999999986544 78899999999999999 8999999999999999
Q ss_pred CCCCcccccceeccccCCCeEE-EEecCCCeEEEee---ceEEEEe
Q 021744 257 NVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFIG 298 (308)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~ 298 (308)
+.+.. +.+..-+. -..|.+ .||.|.+|+++++ .+.+|..
T Consensus 302 ~~~~S--RdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 302 NHGHS--RDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred CCCcc--hhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeec
Confidence 87632 22221111 235666 9999999999666 4444443
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4e-21 Score=170.30 Aligned_cols=242 Identities=14% Similarity=0.138 Sum_probs=188.6
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
|..|.+++.|+.||+|+.... ...|....-+.....++.-.+.+ ++++.+++|.+|.+..++.- ..+
T Consensus 25 gefi~tcgsdg~ir~~~~~sd-----------~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~-~iL 92 (933)
T KOG1274|consen 25 GEFICTCGSDGDIRKWKTNSD-----------EEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED-TIL 92 (933)
T ss_pred CCEEEEecCCCceEEeecCCc-----------ccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc-cee
Confidence 448999999999999997654 12222222133334566666668 99999999999999766543 234
Q ss_pred ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe
Q 021744 105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~ 183 (308)
..+..++..++++.+|.. +.|+.|-.|++-++.+. .....+++|+++|.++.|+|++++||+.+-||+|++||+.++.
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 556667899999999977 88899999999999988 7888999999999999999999999999999999999999988
Q ss_pred EEEEEeC-------C-CeeE---EEEcC-CCEEEEEcCCcEEEEEcCCCcee-ee--eCCCCCEEEEEEeCC--EEEEEc
Q 021744 184 CAGVINL-------G-GEVG---CMISE-GPWIFIGVTNFVKAWNTQTNTDL-SL--SGPVGQVYAMAVGND--LLFAGT 246 (308)
Q Consensus 184 ~~~~~~~-------~-~~v~---~~~~~-~~~l~~~~d~~i~~wd~~~~~~~-~~--~~~~~~v~~~~~~~~--~l~~g~ 246 (308)
+..++.. . ..+. .+.|+ +++++.+.|+.|++|+..+.+.+ .+ +.+...+..+.|+|. |||+++
T Consensus 172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence 8777651 1 1222 12466 56666788999999999998876 33 344555999999999 999999
Q ss_pred CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744 247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL 288 (308)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~ 288 (308)
.||.|.|||..+- .. +.....|++ +|.|+..-+.
T Consensus 252 ~~g~I~vWnv~t~----~~----~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 252 LDGQILVWNVDTH----ER----HEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred cCCcEEEEecccc----hh----ccccceeEEEecCCCCCeeE
Confidence 9999999999972 11 334567888 9999876554
No 116
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.1e-20 Score=160.75 Aligned_cols=260 Identities=16% Similarity=0.190 Sum_probs=194.3
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEecCCCeeeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
.+.+|.+-.|+.|.+|+.... .+..+.+ .|+++. .++|++.+++++.+.+|+|.-||+.+.++..
T Consensus 37 S~~lAvsRt~g~IEiwN~~~~-w~~~~vi----------~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~- 104 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSNN-WFLEPVI----------HGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY- 104 (691)
T ss_pred CCceeeeccCCcEEEEccCCC-ceeeEEE----------ecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE-
Confidence 445889999999999998874 2222222 233333 6999977777999999999999998876652
Q ss_pred ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744 103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~ 180 (308)
........++.++.+|.+.. +.|++||.+..++...+. +..+.|.-.++.|.+++|+|++..+++|+.||.|++||..
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 22334455899999998866 788899988888888772 2233444567999999999999999999999999999999
Q ss_pred CCeEEEEEe------CC-Ce--eEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEc
Q 021744 181 SGQCAGVIN------LG-GE--VGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGT 246 (308)
Q Consensus 181 ~~~~~~~~~------~~-~~--v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~ 246 (308)
+++.+.... .. .+ +.++ +-....|++|. .|+|++||...+.+. .+..|...|.+++..++ ++++++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence 988777332 11 11 2233 33556677776 899999999999888 78889999999999988 999999
Q ss_pred CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
.|+.|..|...+....+........|...+++ +..++ .+++++ +..+++..
T Consensus 265 vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 265 VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred CCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 99999999988765433344445578888888 77666 444333 66666544
No 117
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.2e-21 Score=156.63 Aligned_cols=237 Identities=14% Similarity=0.174 Sum_probs=176.9
Q ss_pred CCCCCCCceEEecCCCeEEEeecCCCCC-CCCCccccc--------CCCCCCccccccc--eeEEecCCCe--eeccCCC
Q 021744 21 GDGGGGGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRE--------LPLPPAATANGAA--AKRFANNTWG--RNNNFNN 87 (308)
Q Consensus 21 ~~~~~~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~--------~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~ 87 (308)
.....|+++|-|+-|..|.|||..--+. .||-.|-.- ........+|+.+ .++++..-.. ||||.|+
T Consensus 187 ~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 187 KSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred CCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 3445688999999999999999875543 444433310 0111223478877 6777766554 9999999
Q ss_pred cEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-CE
Q 021744 88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DK 164 (308)
Q Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 164 (308)
||++||++++++.. ....|.+.|.++.|++.... ++|+.|++|.+.|.+.....-..++ -.+.|-.++|+|.. ..
T Consensus 267 TV~lWD~~~g~p~~-s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~ 344 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS-SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENS 344 (463)
T ss_pred eEEEEEcCCCCcce-ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCcee
Confidence 99999999998763 33467778999999998733 8999999999999985422222222 45788999999865 55
Q ss_pred EEEeeCCCcEEEEeCCC-CeEEEEEe-CCCeeEEEEcC---CCEEEEEc-CCcEEEEEcCCCceeeeeCCC---CCEEEE
Q 021744 165 LYSGSKDETVRVWDCAS-GQCAGVIN-LGGEVGCMISE---GPWIFIGV-TNFVKAWNTQTNTDLSLSGPV---GQVYAM 235 (308)
Q Consensus 165 l~s~s~dg~v~~wd~~~-~~~~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~---~~v~~~ 235 (308)
++++..||+|+-+|++. ++++.+++ |..+|.+++.+ ..++++++ ++.+++|++..........|. +...|+
T Consensus 345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 78888999999999997 58999988 88999988533 34566555 999999998866554333332 346788
Q ss_pred EEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744 236 AVGND---LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 236 ~~~~~---~l~~g~~dg~i~iwd~~~~ 259 (308)
++.|+ +++.|+..+.+++||+.+.
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccC
Confidence 88888 8899999999999999886
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.7e-20 Score=139.00 Aligned_cols=224 Identities=15% Similarity=0.137 Sum_probs=174.5
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCC----------C-CC---cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEE
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGN----------S-KN---SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSW 134 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~----------~-~~---~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iw 134 (308)
+++|+|.|.. +.|+..+++||-.... . ++ +....+.|+..+.+.+|+|.|.. ++|+.|++|++.
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l 116 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVL 116 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEE
Confidence 7999999999 9999999999975421 1 11 11123556677999999999977 899999999996
Q ss_pred EcCCCc----eeeeEeeCcccceEEEEEeCC----CCEEEEeeC-CCcEEEEeCCCCeEEEEEe-CCCeeEEEE-cCCCE
Q 021744 135 TVGDGF----KLLTQLEGHQKVVSGITLPSG----SDKLYSGSK-DETVRVWDCASGQCAGVIN-LGGEVGCMI-SEGPW 203 (308)
Q Consensus 135 d~~~~~----~~~~~~~~h~~~v~~~~~~~~----~~~l~s~s~-dg~v~~wd~~~~~~~~~~~-~~~~v~~~~-~~~~~ 203 (308)
-.+... -.-.++.-|.+.|..++|-.+ +..|++++. |-.|++-|-.+++....+. |.+.+.++. -++-.
T Consensus 117 ~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m 196 (350)
T KOG0641|consen 117 PFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAM 196 (350)
T ss_pred ecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcE
Confidence 654321 123456679999999999643 356666654 6677788888999988887 788888874 56777
Q ss_pred EEEEc-CCcEEEEEcCCCcee-eee--CC-----CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744 204 IFIGV-TNFVKAWNTQTNTDL-SLS--GP-----VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH 272 (308)
Q Consensus 204 l~~~~-d~~i~~wd~~~~~~~-~~~--~~-----~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 272 (308)
+++|+ |.+|++||++-..++ ++. -| .+.|.+++..|. +|++|..|....+||++.+ ++++.+..|
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~----r~iq~f~ph 272 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG----RMIQRFHPH 272 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC----ceeeeeCCC
Confidence 77888 999999999988776 222 11 357999999999 8999999999999999998 899999999
Q ss_pred CCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744 273 TDSNRA-HFSRDVTSLLGSV-SFIMFIG 298 (308)
Q Consensus 273 ~~~v~~-~~s~d~~~l~~s~-s~~i~~~ 298 (308)
...|++ .|||..-||+++. +..|.+.
T Consensus 273 sadir~vrfsp~a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 273 SADIRCVRFSPGAHYLLTCSYDMKIKLT 300 (350)
T ss_pred ccceeEEEeCCCceEEEEecccceEEEe
Confidence 999999 9999998888544 5555443
No 119
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=9.4e-21 Score=156.15 Aligned_cols=278 Identities=12% Similarity=0.095 Sum_probs=194.8
Q ss_pred eEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCC
Q 021744 11 RVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFN 86 (308)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d 86 (308)
|+|.-.-++ ...-.++|+|..-|+|=+||.+...++ .+.......|... ++.|+|.... .+.|+|
T Consensus 188 Rit~l~fHP---t~~~~lva~GdK~G~VG~Wn~~~~~~d--------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 188 RITSLAFHP---TENRKLVAVGDKGGQVGLWNFGTQEKD--------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred ceEEEEecc---cCcceEEEEccCCCcEEEEecCCCCCc--------cCceEEeccCCccccceEecCCChhheeeeccC
Confidence 555555666 445578999999999999999643110 1222223355555 8999998765 899999
Q ss_pred CcEEEEECCCCCCccccc-ceeeeeeeeeeeecCCc-eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-C
Q 021744 87 NHSNNYRAGNSKNSNINN-RAVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-D 163 (308)
Q Consensus 87 ~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~ 163 (308)
|+||+=|++......... .........+.|+.... .+++..=|...+||.++.......+.-|+..|.+++++|.. .
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 999999998664321111 11122245566666554 47788888999999998855566777899999999999965 5
Q ss_pred EEEEeeCCCcEEEEeCCCCe-----EEEEEeCCCeeEEE--EcCCCEEE-EEcCCcEEEEEcC----CCceeeeeCCCC-
Q 021744 164 KLYSGSKDETVRVWDCASGQ-----CAGVINLGGEVGCM--ISEGPWIF-IGVTNFVKAWNTQ----TNTDLSLSGPVG- 230 (308)
Q Consensus 164 ~l~s~s~dg~v~~wd~~~~~-----~~~~~~~~~~v~~~--~~~~~~l~-~~~d~~i~~wd~~----~~~~~~~~~~~~- 230 (308)
+|+|+|.|++++|||++.-. .+..+.|...|.+. +|.+-.|+ ++.|+.|+|||.. ..++.....|..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~ 416 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR 416 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence 68999999999999998632 25556677777765 46544455 5569999999984 333332223332
Q ss_pred -----CEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc-CCCeEE--EEecCCCeEE-Eee-ceEEEEe
Q 021744 231 -----QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH-TDSNRA--HFSRDVTSLL-GSV-SFIMFIG 298 (308)
Q Consensus 231 -----~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~--~~s~d~~~l~-~s~-s~~i~~~ 298 (308)
......|.|+ ++++|-.-..|-|+|-..+ +.+.++... ...|.+ .|+|-+..++ ++. ++.||++
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~----q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG----QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCcceeEEcCCCC----EEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 3456779999 8999999999999999887 666776543 335666 9999887455 433 8888988
Q ss_pred ecCce
Q 021744 299 QNNKG 303 (308)
Q Consensus 299 ~~~~~ 303 (308)
.+.++
T Consensus 493 t~k~~ 497 (498)
T KOG4328|consen 493 TNKKS 497 (498)
T ss_pred ecCCC
Confidence 77653
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.7e-22 Score=174.69 Aligned_cols=211 Identities=17% Similarity=0.228 Sum_probs=176.5
Q ss_pred CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744 24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~ 100 (308)
.....+++|+.|..+-+|....- .+.. .+.+|+.. ++.|+++... +.|+.+|+|++||++.++..
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp-----------~~i~-S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKP-----------NAIT-SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred ccceeeccCCCceeeccccccCC-----------chhh-eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 44577899999999999987754 2222 26788888 9999999999 99999999999999877655
Q ss_pred ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
. .+.+|...+..+.|+|-+.+ +.|+.|..+.+||.+.. -+.+.+.+|...|..+.|+|+|+++++++.|.++++||+
T Consensus 106 r-tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 106 R-TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred h-hhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 3 55677777888889999977 88999999999999966 689999999999999999999999999999999999999
Q ss_pred CCCeEEEEEe-CCCeeEEE-EcC-CCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCC
Q 021744 180 ASGQCAGVIN-LGGEVGCM-ISE-GPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQD 248 (308)
Q Consensus 180 ~~~~~~~~~~-~~~~v~~~-~~~-~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~d 248 (308)
..|+.+..|+ |+..+..+ ..+ +-+++.|+ |+++++||+++.+.+ ........|.+..|+|+ .+++|..+
T Consensus 184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9999999999 77777766 334 44555666 999999999999888 56666788999999999 55555543
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=155.37 Aligned_cols=260 Identities=14% Similarity=0.142 Sum_probs=185.7
Q ss_pred ceEEecCCC-eEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCC-CcEEEEECCCCCCccccc
Q 021744 28 LSTADTRQK-VCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFN-NHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 28 ~~~s~s~d~-~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d-~~i~vwd~~~~~~~~~~~ 104 (308)
.+.+++.|. ++++||..++.. +.. .....+..+|.- -+..+ .+ +++... ..|.+|.+...+... ..
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~-----~~~-ykg~~~a~~~sl--~~l~~--~yllsaq~~rp~l~vw~i~k~~~~~-q~ 77 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTS-----LLQ-YKGSYLAQAASL--TALNN--EYLLSAQLKRPLLHVWEILKKDQVV-QY 77 (476)
T ss_pred EEeccCCCCcceeEEecCCCce-----eEE-ecCcccccchhh--hhhch--hheeeecccCccccccccCchhhhh-hh
Confidence 344455565 599999998821 000 000001111211 12222 45 444433 468999996554442 23
Q ss_pred ceeeeeeeeeeeecCCceEEee-CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC--
Q 021744 105 RAVIKTDILCRNWVQGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-- 181 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~g~-~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-- 181 (308)
....+.+.++.-+|.|.++.++ ..+.|++|.+.++ ..+..+.+|-..|+++.|+-|+.+++||+.||.|.+|.+-+
T Consensus 78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 78 IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred cccccceeeeecCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 3344558888999999996666 9999999999999 88888999999999999999999999999999999997642
Q ss_pred -------CeEEEEEe-CCCeeEEEE-c---CCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc
Q 021744 182 -------GQCAGVIN-LGGEVGCMI-S---EGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT 246 (308)
Q Consensus 182 -------~~~~~~~~-~~~~v~~~~-~---~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~ 246 (308)
-+++..+. |.-+++.+. . ...++++.+ |.++++||+..+..+.-...+..+.+++++|. .+..|+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence 34566666 666777773 2 234566554 99999999999998854556778999999998 899999
Q ss_pred CCCeEEEEEcCCCCc------------ccccceeccccCC--CeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 247 QDGAILAWKFNVTTN------------CFEPAASLKVHTD--SNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 247 ~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~--~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
.+|.|.+.++..-.. ....+..+.+|.+ .|+| +.+-||.+|+++. +..+.+|.
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 999999998765431 1133455668888 9999 9999999998554 66665554
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.1e-20 Score=153.28 Aligned_cols=252 Identities=15% Similarity=0.158 Sum_probs=189.6
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCC-e-eeccCCCcEEEEECCCCCCcccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
-.++.+++.|++++++.++.- +++ .++.-.-...|++ +.+|+|+|. . ++++.-.-+..||+.+++.....
T Consensus 225 ~plllvaG~d~~lrifqvDGk-~N~--~lqS~~l~~fPi~-----~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 225 APLLLVAGLDGTLRIFQVDGK-VNP--KLQSIHLEKFPIQ-----KAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred CceEEEecCCCcEEEEEecCc-cCh--hheeeeeccCccc-----eeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 468999999999999998753 111 1211111111111 579999999 4 88999999999999887644322
Q ss_pred -cceee-eeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744 104 -NRAVI-KTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 104 -~~~~~-~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~ 180 (308)
..+++ ..+.....++++.+ +..+..|.|.+....++ +.+.+++ -.+.|..++|+.+++.|+.++.+|.|.+||++
T Consensus 297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~ 374 (514)
T KOG2055|consen 297 PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLR 374 (514)
T ss_pred CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecC
Confidence 22333 33666677888877 88999999999999999 7888887 67899999999999999999999999999999
Q ss_pred CCeEEEEEeCCCee----EEEEcCCCEEEEEc-CCcEEEEEcCCC------cee-eeeCCCCCEEEEEEeCC--EEEEEc
Q 021744 181 SGQCAGVINLGGEV----GCMISEGPWIFIGV-TNFVKAWNTQTN------TDL-SLSGPVGQVYAMAVGND--LLFAGT 246 (308)
Q Consensus 181 ~~~~~~~~~~~~~v----~~~~~~~~~l~~~~-d~~i~~wd~~~~------~~~-~~~~~~~~v~~~~~~~~--~l~~g~ 246 (308)
...++..+..++.+ .|.+.++.++|+|+ .|.|.|||..+. +++ .+..-...|++|.|+++ +||.+|
T Consensus 375 ~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 375 QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 99999999855443 35568899999999 789999996543 222 55566778999999999 666666
Q ss_pred C--CCeEEEEEcCCCCcccccceecc---ccCCCeEE-EEecCCCeEEEee
Q 021744 247 Q--DGAILAWKFNVTTNCFEPAASLK---VHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 247 ~--dg~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
. +..+++-.+.+.+ ...-+. ..-+.++| +|||.+.+|+.+.
T Consensus 455 ~~~knalrLVHvPS~T----VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKNALRLVHVPSCT----VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred hccccceEEEecccee----eeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 4 6789999998852 222232 34456888 9999999998654
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.4e-20 Score=145.10 Aligned_cols=267 Identities=10% Similarity=0.092 Sum_probs=180.3
Q ss_pred CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCc
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~ 100 (308)
+..|-.+||++.|++||+|+.........+++....+.. |.. .++|+||-+. ++.-...++++|.+...+-.
T Consensus 95 sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-----hpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 95 SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-----HPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-----Cce-EEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 444778999999999999998765222223333333222 322 4999999887 67778889999988433211
Q ss_pred cc-----cc------ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEe
Q 021744 101 NI-----NN------RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG 168 (308)
Q Consensus 101 ~~-----~~------~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 168 (308)
.. .. .-|...+.....-..+.+ ++++.|..|.+|+++ + +.+..+......-+..+++|+|++++++
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~~n~~aavSP~GRFia~~ 246 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQSSNYDAAVSPDGRFIAVS 246 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceeeeeccccccccceeeCCCCcEEEEe
Confidence 10 11 111222333333333344 889999999999998 6 6788887777778889999999999999
Q ss_pred eCCCcEEEEeCC---CC---eEEE--EEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc-----eeee------
Q 021744 169 SKDETVRVWDCA---SG---QCAG--VIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT-----DLSL------ 225 (308)
Q Consensus 169 s~dg~v~~wd~~---~~---~~~~--~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~-----~~~~------ 225 (308)
+----|++|.+- .| +..+ .++ |...+..+ +++.+.+++.+ ||++++||+.-.- +..+
T Consensus 247 gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 247 GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 999999999763 22 1222 233 55555544 46666777555 9999999986321 1111
Q ss_pred -eCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceecc-ccCCCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744 226 -SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK-VHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNN 301 (308)
Q Consensus 226 -~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~ 301 (308)
....+....++++|+ .+++.+....+++|..+.+ +...+++ .|...|.+ +|+++|+++++.++..+-+..|.
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g----~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~nt 402 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDG----KDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRNT 402 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccC----ccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecCC
Confidence 112234457999999 4444455568999999987 4445554 68999999 99999999999997776666543
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.9e-21 Score=169.38 Aligned_cols=214 Identities=13% Similarity=0.205 Sum_probs=170.7
Q ss_pred eeEEec-CCCe-eeccCCCcEEEEECCC--CCCcccccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCceeee
Q 021744 71 AKRFAN-NTWG-RNNNFNNHSNNYRAGN--SKNSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLT 144 (308)
Q Consensus 71 ~i~~s~-~g~~-~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~~~~~ 144 (308)
.+.|+. ..++ |+++..|.|.+||+.. .+........|+..+..+.|++... .++|+.||.|++||++.. +...
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~ 170 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKS 170 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccc
Confidence 566663 3445 9999999999999975 2233334567888899999988773 399999999999999988 6788
Q ss_pred EeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCC-CeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcC
Q 021744 145 QLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS-GQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQ 218 (308)
Q Consensus 145 ~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~ 218 (308)
++.+....|+.+.|+| .+.+++++...|.+++||++. .++...+. |.+++.|+ .|++.+||+|+ |+.|+|||..
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 8888999999999998 467899999999999999996 34555555 89999988 48888999988 9999999998
Q ss_pred CCcee--eeeCCCCCEEEEEEeCC---EEEEEcC--CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744 219 TNTDL--SLSGPVGQVYAMAVGND---LLFAGTQ--DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL 288 (308)
Q Consensus 219 ~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~ 288 (308)
+.+.. .......+|..+.|-|+ .|++++. |-.|+|||++-+ +-+..++..|...++. +|......++
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP---YIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP---YIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc---cccceeeeccCccccceeccCCCceee
Confidence 76554 22234568999999998 6777764 778999999987 4677888999999988 8866333333
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=9.5e-20 Score=142.72 Aligned_cols=265 Identities=14% Similarity=0.216 Sum_probs=177.5
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcc---cccCCCCCCccccccc---eeEEecCCCe-eeccCCCcEEEEECCCCC
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYL---HRELPLPPAATANGAA---AKRFANNTWG-RNNNFNNHSNNYRAGNSK 98 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~---~~~~~~~~~~~gh~~~---~i~~s~~g~~-~s~~~d~~i~vwd~~~~~ 98 (308)
+.+.++|+.|+.|-|||.++-.-.....+ |.-........+|.-. .++|--|... .+++.|.+++|||.++.|
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 78999999999999999876421111111 1111112223355444 5666667777 999999999999998876
Q ss_pred CcccccceeeeeeeeeeeecCC--ce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE-EEEeeCCCc
Q 021744 99 NSNINNRAVIKTDILCRNWVQG--NC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYSGSKDET 173 (308)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~--~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~ 173 (308)
... ....+..|..-+++|-. .+ ++|..+-.|++-|+..+ ...+++.||.+.|.++.|+|..++ |++|+.||.
T Consensus 136 ~a~--~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 136 EAV--DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA 212 (397)
T ss_pred eeE--EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence 542 22233335555555543 23 77889999999999999 899999999999999999998877 589999999
Q ss_pred EEEEeCCCC-eEEEEEe---------------CCCeeEEE--EcCCCEEEEE-cCCcEEEEEcCCCcee--e--eeCCCC
Q 021744 174 VRVWDCASG-QCAGVIN---------------LGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL--S--LSGPVG 230 (308)
Q Consensus 174 v~~wd~~~~-~~~~~~~---------------~~~~v~~~--~~~~~~l~~~-~d~~i~~wd~~~~~~~--~--~~~~~~ 230 (308)
|++||++.. .+...+. |.+.+..+ .+++.++++. .|..+++|+..+++.. . -..|..
T Consensus 213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~ 292 (397)
T KOG4283|consen 213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ 292 (397)
T ss_pred EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccc
Confidence 999999864 3444433 22333333 4788888854 5999999999887533 1 011111
Q ss_pred ----CEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE-EeeceEEEE
Q 021744 231 ----QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSVSFIMFI 297 (308)
Q Consensus 231 ----~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~s~~i~~ 297 (308)
.+.--+...+.++.--.++.+.++.+-.+ +.+..+..|...+.+ +|.|+=+... +..+..|+.
T Consensus 293 ~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sg----s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 293 TTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEG----SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYM 361 (397)
T ss_pred cccceEEEeecccceEEEEecCCeEEEEEccCc----eEEEeeecccceeeEEeecCchhhhhccccCCcccc
Confidence 11100112224444445589999999887 778889999888888 8887744444 333444433
No 126
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=7.4e-21 Score=153.34 Aligned_cols=189 Identities=16% Similarity=0.201 Sum_probs=144.2
Q ss_pred eeEEecCCCe---eeccCCCcEEEEECCCCCC---------------cccccceeeeeeeeeeeecC--CceEEeeCCCe
Q 021744 71 AKRFANNTWG---RNNNFNNHSNNYRAGNSKN---------------SNINNRAVIKTDILCRNWVQ--GNCMYGEKCKF 130 (308)
Q Consensus 71 ~i~~s~~g~~---~s~~~d~~i~vwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~ 130 (308)
.+..++-++- |+=+..|.|+||++...-. ......+|+..-..+.|+|. |..++|..-+.
T Consensus 156 Rvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~ 235 (440)
T KOG0302|consen 156 RVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKG 235 (440)
T ss_pred eeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccc
Confidence 4666666543 6667779999999952210 00112344444566788873 45578888899
Q ss_pred EEEEEcCCCc--eeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCC---eEEEEEeCCCeeEEEEcC--CC
Q 021744 131 LHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASG---QCAGVINLGGEVGCMISE--GP 202 (308)
Q Consensus 131 i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~---~~~~~~~~~~~v~~~~~~--~~ 202 (308)
|++|.+.++. .-...+.+|+..|-.++|+|.. ..|+|||.||+|+|||++.+ .++.+-.|+..|..++-+ ..
T Consensus 236 I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 236 IHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP 315 (440)
T ss_pred eEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence 9999998873 1234567899999999999965 67899999999999999998 455555588888888533 34
Q ss_pred EEEEEc-CCcEEEEEcCCCc---ee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744 203 WIFIGV-TNFVKAWNTQTNT---DL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 203 ~l~~~~-d~~i~~wd~~~~~---~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~ 259 (308)
+|++|. ||+++|||+++.+ ++ .++.|..+|+++.|+|. .|++++.|..|.|||+...
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 788887 8999999999754 33 88999999999999987 8999999999999998753
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=3.2e-19 Score=149.91 Aligned_cols=234 Identities=13% Similarity=0.023 Sum_probs=159.7
Q ss_pred ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCccccc
Q 021744 28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
++++++.++.|++||..++.. + .. +..+... .++++|+++. ++++.|+.|++||+.+.+.+...
T Consensus 45 l~~~~~~~~~v~~~d~~~~~~-----~------~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~- 111 (300)
T TIGR03866 45 LYVCASDSDTIQVIDLATGEV-----I------GT-LPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI- 111 (300)
T ss_pred EEEEECCCCeEEEEECCCCcE-----E------Ee-ccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe-
Confidence 457788899999999887611 1 00 1111222 6889999987 55667899999999776443211
Q ss_pred ceeeeeeeeeeeecCCce-EEeeCC-CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE-EeeCCCcEEEEeCCC
Q 021744 105 RAVIKTDILCRNWVQGNC-MYGEKC-KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCAS 181 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~g~~d-~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~v~~wd~~~ 181 (308)
.....+..+.++|++.. +++..+ ..+.+||..+. +....+.. ...+..++|+|++++++ ++..++.|++||+++
T Consensus 112 -~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 112 -PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY-EIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred -eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-eEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 11223567889999977 555554 45778899877 55544432 33557899999998875 555699999999999
Q ss_pred CeEEEEEeCC------Ce---e-EEEEcCCCEEEEE--cCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEE-c
Q 021744 182 GQCAGVINLG------GE---V-GCMISEGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAG-T 246 (308)
Q Consensus 182 ~~~~~~~~~~------~~---v-~~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g-~ 246 (308)
++.+..+... .. . ..+.+++++++++ .++.+.+||+++++......+...+.+++|+|+ +|+++ .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 268 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNG 268 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcC
Confidence 9887766521 11 1 2235788876543 377899999998887643334557899999999 66665 5
Q ss_pred CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744 247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR 282 (308)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~ 282 (308)
.++.|++||+.++ +.+.++.....+ +. +|+|
T Consensus 269 ~~~~i~v~d~~~~----~~~~~~~~~~~~-~~~~~~~ 300 (300)
T TIGR03866 269 VSNDVSVIDVAAL----KVIKSIKVGRLP-WGVVVRP 300 (300)
T ss_pred CCCeEEEEECCCC----cEEEEEEccccc-ceeEeCC
Confidence 6999999999997 666777644333 44 5543
No 128
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.3e-21 Score=155.52 Aligned_cols=234 Identities=10% Similarity=0.077 Sum_probs=180.4
Q ss_pred CCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEE
Q 021744 59 PLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSW 134 (308)
Q Consensus 59 ~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 134 (308)
|....+.||... +++=+|.... |+|+.||.|+|||+...... .....|.+.|..+++.. +..++.+.|++|+.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-RTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQW 134 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-heeecccCceeeEEecc-cceEEecCCcceeee
Confidence 333455688887 8888998844 99999999999999765443 24566777777777766 677999999999999
Q ss_pred EcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC-CCeeEEEE--cC-CCEEEEE-cC
Q 021744 135 TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMI--SE-GPWIFIG-VT 209 (308)
Q Consensus 135 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-~~~v~~~~--~~-~~~l~~~-~d 209 (308)
-+... +++++.+ ...+..+.-+..+..++||+++ |.|||.+...+++.+.- -..+.++. |- ..+|+++ +|
T Consensus 135 k~~~~--p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 135 KIDGP--PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred eccCC--cceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 98763 5666664 5677788877777889999874 99999999999998883 34455553 33 3455555 59
Q ss_pred CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCe
Q 021744 210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS 286 (308)
Q Consensus 210 ~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~ 286 (308)
+.|.+||+++..++.-.--...-+.|+|+|+ .|.+|++|..++.||++.-. .++....+|.+.|.. .|||.|+-
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhc---ccchhhcccceeEEEeccCCCcch
Confidence 9999999999988733223456678999999 88999999999999999864 788889999999999 99999998
Q ss_pred EEE-eeceEEEEeecCc
Q 021744 287 LLG-SVSFIMFIGQNNK 302 (308)
Q Consensus 287 l~~-s~s~~i~~~~~~~ 302 (308)
+++ |.+.+|-|...++
T Consensus 287 fvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNH 303 (433)
T ss_pred hccccccceEEEeecCC
Confidence 885 4466666555443
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=155.15 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=153.8
Q ss_pred CCe-eeccCCCcEEEEECCCCCCc------c--------------cccceeeeeeeeeeeecCC--ceEEeeCCCeEEEE
Q 021744 78 TWG-RNNNFNNHSNNYRAGNSKNS------N--------------INNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSW 134 (308)
Q Consensus 78 g~~-~s~~~d~~i~vwd~~~~~~~------~--------------~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iw 134 (308)
|++ |.|..|-.|.|||+.-...+ + ....+|...+..+.+...- -+++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 668 99999999999999532211 0 0112344455555555443 33899999999999
Q ss_pred EcCCCceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCC-CeEEEEEeCCCeeEEE-E-c-CCCEEEEEc-
Q 021744 135 TVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEVGCM-I-S-EGPWIFIGV- 208 (308)
Q Consensus 135 d~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~-~~~~~~~~~~~~v~~~-~-~-~~~~l~~~~- 208 (308)
|+.++ ++..++..|.+.|.++.|+|. ...|++|+.|++|.+.|.+. ...-..++..+.+-.+ + + ....++++.
T Consensus 272 D~~~g-~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTG-KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCC-CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 99999 899999999999999999985 57899999999999999994 3344455556666555 2 2 233444454
Q ss_pred CCcEEEEEcCCC-cee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744 209 TNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR 282 (308)
Q Consensus 209 d~~i~~wd~~~~-~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~ 282 (308)
||+++-+|+|.. +++ +++.|.++|.+|++++. ++++++.|+.|++|++....+ +.+....-.-+...| ++.|
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC--cccccccccccceeecccCC
Confidence 999999999986 555 89999999999999876 899999999999999987543 223322222234556 7788
Q ss_pred CCCeEEEe
Q 021744 283 DVTSLLGS 290 (308)
Q Consensus 283 d~~~l~~s 290 (308)
+-.++++.
T Consensus 429 ~~a~~la~ 436 (463)
T KOG0270|consen 429 DVAFTLAF 436 (463)
T ss_pred CcceEEEe
Confidence 77666543
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=4.1e-21 Score=160.12 Aligned_cols=220 Identities=13% Similarity=0.219 Sum_probs=173.4
Q ss_pred ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC---Ccccccce-eeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744 66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK---NSNINNRA-VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG 137 (308)
Q Consensus 66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~ 137 (308)
.|..- ++.++...++ .||+..+ |+|||+.... ++...-.. ....++.|..+++|+. ++|++-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCe-EEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 45444 6777777778 7887665 9999995331 11111111 2334899999999965 899999999999998
Q ss_pred CCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcE
Q 021744 138 DGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFV 212 (308)
Q Consensus 138 ~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i 212 (308)
... .+..++....-...+++.+||.+..++|..||.|.|||+++...++.|+ |..-..|+ ..+|..|-+|. |++|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 662 2333444444567788999999999999999999999999999999999 66666665 57899999887 9999
Q ss_pred EEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744 213 KAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG 289 (308)
Q Consensus 213 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~ 289 (308)
+.||++++....-....+.|.++.++|. +++.|-+++.+.+...... ....+.-|...|.+ .|.+-|+++++
T Consensus 576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-----~kyqlhlheScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-----EKYQLHLHESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc-----cceeecccccEEEEEEecccCceeee
Confidence 9999999877755556789999999998 9999999999999888764 34567778999999 99999999997
Q ss_pred ee
Q 021744 290 SV 291 (308)
Q Consensus 290 s~ 291 (308)
.+
T Consensus 651 tG 652 (705)
T KOG0639|consen 651 TG 652 (705)
T ss_pred cC
Confidence 66
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=4.6e-20 Score=148.78 Aligned_cols=225 Identities=14% Similarity=0.101 Sum_probs=160.2
Q ss_pred CCceEEecCCCeEEEeecCCCCC---CCCCcccc-cCCCCCCccccccc--eeEEecC--CCeeeccCCCcEEEEECCCC
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNR---FPCPYLHR-ELPLPPAATANGAA--AKRFANN--TWGRNNNFNNHSNNYRAGNS 97 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~---~~~~~~~~-~~~~~~~~~gh~~~--~i~~s~~--g~~~s~~~d~~i~vwd~~~~ 97 (308)
..+.|+=+..|.|.||+....-+ .+....+. .........+|... .+.|||- |..+||.--+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 35677788899999999764311 11111111 11111233477666 8999993 33377777788999999776
Q ss_pred CCc--ccccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCC
Q 021744 98 KNS--NINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172 (308)
Q Consensus 98 ~~~--~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg 172 (308)
... ..+..+|...|-.+.++|... +++++.|+.|+|||++.+. +.....+.|.+.|..+.|+....+|++|+.||
T Consensus 245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG 324 (440)
T ss_pred ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence 532 234566888899999999874 3889999999999999772 23334488999999999999888999999999
Q ss_pred cEEEEeCCC---CeEEEEEe-CCCeeEEE-Ec--CCCEEE-EEcCCcEEEEEcCCCce-----------------eeeeC
Q 021744 173 TVRVWDCAS---GQCAGVIN-LGGEVGCM-IS--EGPWIF-IGVTNFVKAWNTQTNTD-----------------LSLSG 227 (308)
Q Consensus 173 ~v~~wd~~~---~~~~~~~~-~~~~v~~~-~~--~~~~l~-~~~d~~i~~wd~~~~~~-----------------~~~~~ 227 (308)
+++|||++. ++++.+++ |..+|+++ +. +...++ +|.|.+|.+||+....- +.+.-
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 999999986 67788888 89999998 43 244444 45599999999864311 11222
Q ss_pred C--CCCEEEEEEeCC---EEEEEcCCCe
Q 021744 228 P--VGQVYAMAVGND---LLFAGTQDGA 250 (308)
Q Consensus 228 ~--~~~v~~~~~~~~---~l~~g~~dg~ 250 (308)
| ...+..+.|++. ++++.+.||.
T Consensus 405 HqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ecchhHhhhheeccCCCCeEEEecccce
Confidence 3 346778888876 8888887764
No 132
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.9e-20 Score=154.84 Aligned_cols=244 Identities=12% Similarity=0.071 Sum_probs=185.6
Q ss_pred ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcccccce
Q 021744 28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRA 106 (308)
Q Consensus 28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~ 106 (308)
.+|+.+.|+.+++|.-... ..+.|......|....|++......+ ++|+..+.|+|||+. .+.+...++.
T Consensus 49 vvas~~gdk~~~~~~K~g~--------~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkd 119 (673)
T KOG4378|consen 49 VVASMAGDKVMRIKEKDGK--------TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKD 119 (673)
T ss_pred EEeecCCceeEEEecccCC--------CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhhhccC
Confidence 3445567999999974432 11233334333442227777666778 999999999999997 5566667788
Q ss_pred eeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCc-ccceEEEEEeCCCC-EEEEeeCCCcEEEEeCCCCe
Q 021744 107 VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQ 183 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~s~s~dg~v~~wd~~~~~ 183 (308)
|...|.++.+.....+ ++++..|.|.|..+.++ ....+|... ...|.-+.|+|..+ +|.+++.+|.|.+||+....
T Consensus 120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s 198 (673)
T KOG4378|consen 120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS 198 (673)
T ss_pred CcceeEEEEecCCcceeEEeccCCcEEEEecccC-ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC
Confidence 8888999998776655 88888999999999988 455555532 45677899998765 46789999999999999877
Q ss_pred EEEEEe--CCCeeE--EEEcCCCE-EE-EEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744 184 CAGVIN--LGGEVG--CMISEGPW-IF-IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (308)
Q Consensus 184 ~~~~~~--~~~~v~--~~~~~~~~-l~-~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd 255 (308)
++..+. |..+.. |++|.+.. |+ +|.|..|.+||.+............+..+++|+++ +|++|+..|.|..||
T Consensus 199 p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 199 PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 776655 555554 55665554 44 46699999999997766633344568899999999 999999999999999
Q ss_pred cCCCCcccccceeccccCCCeEE-EEecCC
Q 021744 256 FNVTTNCFEPAASLKVHTDSNRA-HFSRDV 284 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~ 284 (308)
++..+ .++..+..|...|++ +|-|.-
T Consensus 279 ~R~~k---~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 279 MRSTK---APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccCC---CCceEeeecccceeEEEeeecc
Confidence 99874 899999999999999 998765
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.9e-20 Score=154.09 Aligned_cols=246 Identities=11% Similarity=0.091 Sum_probs=176.3
Q ss_pred EecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCccccccee-
Q 021744 31 ADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAV- 107 (308)
Q Consensus 31 s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~- 107 (308)
.+|...++++||+......+|-..+. ..|....+.|+..... ++-+.|+.+++|.-. ++....+....
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t--------~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~ 77 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQT--------AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKL 77 (673)
T ss_pred eeccCCceEEeecccccCccccccCC--------CCCcceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeecc
Confidence 34445689999987652222211111 0111125777766655 788889999999864 33222222111
Q ss_pred -eeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE
Q 021744 108 -IKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (308)
Q Consensus 108 -~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~ 185 (308)
.....|+.......+ ++|+..+.|+|||++.. .+.+.+++|+..|+++.++-...+|++++..|.|.+..+.+++.-
T Consensus 78 ~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 78 TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred ccchHHHHhhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 111223332222344 88999999999999966 678889999999999999999999999999999999999999988
Q ss_pred EEEeCC-Ce-eEEE--EcCCCEEE-E-EcCCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEE
Q 021744 186 GVINLG-GE-VGCM--ISEGPWIF-I-GVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAW 254 (308)
Q Consensus 186 ~~~~~~-~~-v~~~--~~~~~~l~-~-~~d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iw 254 (308)
.++.++ +. +.-+ ++..++++ + +.+|.|.+||.....++ ....|..+...++|+|. +|++.+.|.+|.+|
T Consensus 157 t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~y 236 (673)
T KOG4378|consen 157 TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIY 236 (673)
T ss_pred cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEe
Confidence 888855 33 3333 45555554 3 44899999999987776 56789999999999998 89999999999999
Q ss_pred EcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 255 KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
|.... +....+ ....+.+. +|+++|.+|+++.
T Consensus 237 D~~s~----~s~~~l-~y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 237 DIRSQ----ASTDRL-TYSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ecccc----ccccee-eecCCcceeeecCCceEEEeec
Confidence 99975 334444 34567778 9999999998655
No 134
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=4.6e-20 Score=166.45 Aligned_cols=217 Identities=14% Similarity=0.163 Sum_probs=170.9
Q ss_pred CCccccccc---eeEEecCCCe-eecc--CCCcEEEEECCCCC-----------CcccccceeeeeeeeeeeecCCce-E
Q 021744 62 PAATANGAA---AKRFANNTWG-RNNN--FNNHSNNYRAGNSK-----------NSNINNRAVIKTDILCRNWVQGNC-M 123 (308)
Q Consensus 62 ~~~~gh~~~---~i~~s~~g~~-~s~~--~d~~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~ 123 (308)
++..+|... .+.++|+|.. |||+ .|+.++||+.+.-- ........|...+.++.|+++|.+ +
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred ccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 344455554 7999999999 9999 99999999985211 111123456667999999999988 8
Q ss_pred EeeCCCeEEEEEcCC----------C-------ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE
Q 021744 124 YGEKCKFLHSWTVGD----------G-------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (308)
Q Consensus 124 ~g~~d~~i~iwd~~~----------~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~ 186 (308)
+|++|+.|.||+... + .+....+.+|...|..++|+|++.+|++++.|++|.+||..+.+.+.
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 999999999999772 0 04567889999999999999999999999999999999999999999
Q ss_pred EEe-CCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCC------CCCEEEEEEeCC--EEEEEcC----CC
Q 021744 187 VIN-LGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGP------VGQVYAMAVGND--LLFAGTQ----DG 249 (308)
Q Consensus 187 ~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~------~~~v~~~~~~~~--~l~~g~~----dg 249 (308)
.+. |...+..+. |-|+++++-+ |++|++|++.+.... .+..+ ......+.|||| +|++... -.
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~ 245 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS 245 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence 988 888887764 6699999755 999999997765444 33332 336789999999 7776543 23
Q ss_pred eEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744 250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR 282 (308)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~ 282 (308)
.+.|.+-.+ ++.-..+-+|..++.+ +|+|
T Consensus 246 ~~~IieR~t----Wk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 246 TIAIIERGT----WKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred eeEEEecCC----ceeeeeeecCCCceEEEEeCh
Confidence 577777655 3666778899999999 9996
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=6e-20 Score=157.07 Aligned_cols=225 Identities=10% Similarity=0.074 Sum_probs=160.2
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCC--
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSK-- 98 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~-- 98 (308)
+-.+|++++.|.++|+||+... +......+.||+.. .++|.|.... ++|+.|+.|.|||+.-..
T Consensus 111 ge~~lVsasGDsT~r~Wdvk~s----------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d 180 (720)
T KOG0321|consen 111 GESLLVSASGDSTIRPWDVKTS----------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD 180 (720)
T ss_pred CceeEEEccCCceeeeeeeccc----------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchh
Confidence 3578999999999999998865 12233357799998 8999998887 999999999999993111
Q ss_pred ------------------C---ccc---ccceeeeeeee---eeeecCC-ceEEeeC-CCeEEEEEcCCCc-----eeee
Q 021744 99 ------------------N---SNI---NNRAVIKTDIL---CRNWVQG-NCMYGEK-CKFLHSWTVGDGF-----KLLT 144 (308)
Q Consensus 99 ------------------~---~~~---~~~~~~~~~~~---~~~~~~~-~~~~g~~-d~~i~iwd~~~~~-----~~~~ 144 (308)
+ ... ....+...+.. +.++.|. .+++++. |+.|+|||++... +...
T Consensus 181 ~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~ 260 (720)
T KOG0321|consen 181 ALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG 260 (720)
T ss_pred hHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc
Confidence 0 000 00112222222 4455555 5577665 9999999998652 1111
Q ss_pred --EeeCc---ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe--EEEEEeCC----CeeE-EEEcCCCEEEEEc-CCc
Q 021744 145 --QLEGH---QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLG----GEVG-CMISEGPWIFIGV-TNF 211 (308)
Q Consensus 145 --~~~~h---~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~--~~~~~~~~----~~v~-~~~~~~~~l~~~~-d~~ 211 (308)
.+.-| .-.+.++..+..|.+|+..+.|++|++||+.+.. ++..+.+. ..+. ++++++.++++|+ |..
T Consensus 261 ~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 261 SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence 12223 3456788888888887666679999999998643 33333311 1122 3468999999887 999
Q ss_pred EEEEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744 212 VKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 212 i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~ 259 (308)
.++|.+.+.+.- .+.+|.-.|++++|.|. -++++++|-.+++|++..+
T Consensus 341 ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 341 AYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999987654 68899999999999987 7888899999999999654
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=9.8e-19 Score=146.06 Aligned_cols=256 Identities=16% Similarity=0.182 Sum_probs=175.1
Q ss_pred CCceEE--ecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCc
Q 021744 26 GGLSTA--DTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 26 ~~~~~s--~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~ 100 (308)
|+++.. .+.+..+.|||.+.. ..+.+.....+.- ...|+|.... ++.+ -+.+.+|+++.+...
T Consensus 168 G~~l~~vD~s~~h~lSVWdWqk~-----------~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~ 235 (626)
T KOG2106|consen 168 GSLLCAVDDSNPHMLSVWDWQKK-----------AKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLV 235 (626)
T ss_pred CceEEEecCCCccccchhhchhh-----------hccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceE
Confidence 444443 466788999999887 2222221122222 6789998877 5554 567999999766433
Q ss_pred cc---ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744 101 NI---NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (308)
Q Consensus 101 ~~---~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w 177 (308)
.. ..+..++.|.+++|.++|..++|.++|.|.||+..+. +..+....|.+.|.+++...+|. |+||+.|..|..|
T Consensus 236 k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~W 313 (626)
T KOG2106|consen 236 KRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILW 313 (626)
T ss_pred EEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCcc-EeecCccceEEec
Confidence 21 2333445699999999999999999999999999887 66666669999999999998886 5559999999999
Q ss_pred eCCCCeEEEEEe------------------------------------------CCCeeEEE--EcCCCEEE-EEcCCcE
Q 021744 178 DCASGQCAGVIN------------------------------------------LGGEVGCM--ISEGPWIF-IGVTNFV 212 (308)
Q Consensus 178 d~~~~~~~~~~~------------------------------------------~~~~v~~~--~~~~~~l~-~~~d~~i 212 (308)
| ..-+.++..+ |......+ .|+...++ +|.|+.+
T Consensus 314 d-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 314 D-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHV 392 (626)
T ss_pred c-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceE
Confidence 8 3222222211 00111111 13334444 4458999
Q ss_pred EEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEe
Q 021744 213 KAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGS 290 (308)
Q Consensus 213 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s 290 (308)
++|+ ..++..-....+++.|+.|+|. .+|.|+..|...+.|.++. ..+..... ..++++ +|+|+|.+|+.+
T Consensus 393 ~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~----~lv~~~~d-~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQ----DLVTIHTD-NEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred EEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccc----eeEEEEec-CCceEEEEEcCCCCEEEEe
Confidence 9998 3334433334668889999998 9999999999999999884 44443334 889999 999999999955
Q ss_pred e-ceEEEE--eecCce
Q 021744 291 V-SFIMFI--GQNNKG 303 (308)
Q Consensus 291 ~-s~~i~~--~~~~~~ 303 (308)
. +..||+ ...++.
T Consensus 466 s~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGR 481 (626)
T ss_pred cCCCeEEEEEECCCCc
Confidence 5 555555 444443
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.5e-19 Score=140.25 Aligned_cols=234 Identities=14% Similarity=0.090 Sum_probs=170.2
Q ss_pred cccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC--C-cccccceeeeeeeeeeeecCC--ce-EEeeCCCeEEEEE
Q 021744 65 TANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK--N-SNINNRAVIKTDILCRNWVQG--NC-MYGEKCKFLHSWT 135 (308)
Q Consensus 65 ~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~-~~g~~d~~i~iwd 135 (308)
.+|..- ++.|.+-|+. |+++.|.+|+|||.+... . .....+.|...+..+.+-+.. .. ++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 456655 8999999999 999999999999974332 1 122446777778888776654 44 8899999999998
Q ss_pred cCCCc--------eeeeEeeCcccceEEEEEeCC--CCEEEEeeCCCcEEEEeCCCCeEEEEEe--------------CC
Q 021744 136 VGDGF--------KLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQCAGVIN--------------LG 191 (308)
Q Consensus 136 ~~~~~--------~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~v~~wd~~~~~~~~~~~--------------~~ 191 (308)
-.... ....++......|+++.|.|. |-++++++.||+++||+.-.--.+..+. +.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 63110 234456667889999999984 6789999999999999876543333322 22
Q ss_pred CeeEEEE-c----CCCEEEEEcCC------cEEEEEcCCCc--e--e-eeeCCCCCEEEEEEeCC------EEEEEcCCC
Q 021744 192 GEVGCMI-S----EGPWIFIGVTN------FVKAWNTQTNT--D--L-SLSGPVGQVYAMAVGND------LLFAGTQDG 249 (308)
Q Consensus 192 ~~v~~~~-~----~~~~l~~~~d~------~i~~wd~~~~~--~--~-~~~~~~~~v~~~~~~~~------~l~~g~~dg 249 (308)
.+..|+. . ...+|++|++. .++||.-.... . + ++.+|.++|++++|.|+ .||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 3344552 2 25578888865 78888665432 2 2 67899999999999998 799999999
Q ss_pred eEEEEEcCCCC----------------cccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 250 AILAWKFNVTT----------------NCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 250 ~i~iwd~~~~~----------------~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
|+||.+.... ...+.+..+..|...|.. .|+-.|..|.+++ ++.+-+|+
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 9999987311 013455667799999999 9999999998777 44444443
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=2.4e-19 Score=153.44 Aligned_cols=265 Identities=15% Similarity=0.105 Sum_probs=179.9
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
-.+||-+-.||.|.++|....+- -.++..+.. ...|-++ .+.+.|.... ++++.|.++++||++.....+.
T Consensus 64 eHiLavadE~G~i~l~dt~~~~f-----r~ee~~lk~-~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~ 137 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVF-----RLEERQLKK-PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG 137 (720)
T ss_pred cceEEEecCCCceeeecchhhhc-----chhhhhhcc-cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc
Confidence 35788888999999999776410 011122222 3456666 7888994444 9999999999999988776554
Q ss_pred -ccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc--------------------------eeeeEeeCcccce
Q 021744 103 -NNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF--------------------------KLLTQLEGHQKVV 153 (308)
Q Consensus 103 -~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~--------------------------~~~~~~~~h~~~v 153 (308)
...+|...+..++|.+.+.. ++|+.||.|.|||++... +.++.-+.+...|
T Consensus 138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence 35678888999999998854 899999999999986331 0111122344445
Q ss_pred EE---EEEeCCCCEEEEeeC-CCcEEEEeCCCCeEEEEEe---------CC---CeeEEEE--cCCCEEEE-EcCCcEEE
Q 021744 154 SG---ITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVIN---------LG---GEVGCMI--SEGPWIFI-GVTNFVKA 214 (308)
Q Consensus 154 ~~---~~~~~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~---------~~---~~v~~~~--~~~~~l~~-~~d~~i~~ 214 (308)
.+ +.+..|...|++++. |+.|++||++......... +. --+.++. ..|.+|++ +.|+.|++
T Consensus 218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ 297 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF 297 (720)
T ss_pred eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence 44 445557888999888 9999999999765443322 11 1123443 34676665 55999999
Q ss_pred EEcCCCcee---eeeCCCCC--EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC--C
Q 021744 215 WNTQTNTDL---SLSGPVGQ--VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD--V 284 (308)
Q Consensus 215 wd~~~~~~~---~~~~~~~~--v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d--~ 284 (308)
|++.+...- .+.++... -..-..+|+ ++++|+.|...++|.+.+.. .....+.+|...|.+ +|.|. .
T Consensus 298 ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e---~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 298 YNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE---APPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred EeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc---CChhhhhCcceEEEEEeeccccCC
Confidence 999876433 33333221 112234677 99999999999999999874 667778899999999 88874 4
Q ss_pred CeEEEeeceEEEEee
Q 021744 285 TSLLGSVSFIMFIGQ 299 (308)
Q Consensus 285 ~~l~~s~s~~i~~~~ 299 (308)
..+.++-+..+-+|.
T Consensus 375 ~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWR 389 (720)
T ss_pred CceeeccCcceEEEe
Confidence 445554454444443
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2e-19 Score=148.56 Aligned_cols=224 Identities=14% Similarity=0.150 Sum_probs=175.4
Q ss_pred ccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCc-ccccceeeeeeeeeeeecCCc-e-EEeeCCCeEEEEEcCCCc
Q 021744 66 ANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS-NINNRAVIKTDILCRNWVQGN-C-MYGEKCKFLHSWTVGDGF 140 (308)
Q Consensus 66 gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~~~ 140 (308)
.|.+. ++.|+|.... ++|+.|++++||.++..... .+...-...++.++.|.|+|. . ++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 44445 8999999999 99999999999999644322 223333444589999999996 3 788899999999998773
Q ss_pred -eeeeEeeCcc-cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEE-EcCCcEEEE
Q 021744 141 -KLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFI-GVTNFVKAW 215 (308)
Q Consensus 141 -~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~-~~d~~i~~w 215 (308)
..+..+.+++ ..+....++|++++|+..+..|.|.+-...+++.+..++.++.+..+ +++++.|++ |.+|.|.+|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 2234444554 46678889999999999999999999999999999999999988866 577777765 559999999
Q ss_pred EcCCCcee-eeeCCCCC--EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCc--ccccceeccccCCCeEE-EEecCCCeE
Q 021744 216 NTQTNTDL-SLSGPVGQ--VYAMAVGND--LLFAGTQDGAILAWKFNVTTN--CFEPAASLKVHTDSNRA-HFSRDVTSL 287 (308)
Q Consensus 216 d~~~~~~~-~~~~~~~~--v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~-~~s~d~~~l 287 (308)
|+++..++ ++.. .+. -++++.+++ +||+|++.|.|.|||..+... ..+++..+..-...|+. .|++|.++|
T Consensus 372 nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 372 NLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred ecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999877 3332 232 356666666 999999999999999654211 13778888888888999 999999988
Q ss_pred EEe
Q 021744 288 LGS 290 (308)
Q Consensus 288 ~~s 290 (308)
+.+
T Consensus 451 Aia 453 (514)
T KOG2055|consen 451 AIA 453 (514)
T ss_pred hhh
Confidence 733
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.9e-19 Score=141.05 Aligned_cols=195 Identities=19% Similarity=0.207 Sum_probs=149.4
Q ss_pred ceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCce-----ee---------eEeeCcccceEEEEEeC-CCCEEEE
Q 021744 105 RAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFK-----LL---------TQLEGHQKVVSGITLPS-GSDKLYS 167 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~-----~~---------~~~~~h~~~v~~~~~~~-~~~~l~s 167 (308)
..|.+.+..+..-+.. ++ ++|+.||.|.+||++.... .+ ..-.+|+-.|..+.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4455566666665543 55 8999999999999975420 00 01136888999999988 5678999
Q ss_pred eeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--Ec---CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC
Q 021744 168 GSKDETVRVWDCASGQCAGVINLGGEVGCM--IS---EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND 240 (308)
Q Consensus 168 ~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~---~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~ 240 (308)
++-|.++++||.++-+....|+.++.+..- +| ...++++|. +-.|++.|+.++... .+.+|.+.|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999999999999988877643 22 355677887 669999999999887 89999999999999998
Q ss_pred ---EEEEEcCCCeEEEEEcCCCCccccc-----------ceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 241 ---LLFAGTQDGAILAWKFNVTTNCFEP-----------AASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 241 ---~l~~g~~dg~i~iwd~~~~~~~~~~-----------~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
.|++|+.||.|++||++.-..++.. +++-..|.+.+.. +|+.|+++++..+ +..+-.++
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 8999999999999999865322211 1223367788899 9999999998655 44444443
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=6e-19 Score=152.31 Aligned_cols=270 Identities=15% Similarity=0.139 Sum_probs=185.7
Q ss_pred CCceEEecCCCeEEEeecCCCC------CCCCCcccccCCC-------------CCCccccccc--eeEEecCCCe-eec
Q 021744 26 GGLSTADTRQKVCNYWRAGKCN------RFPCPYLHRELPL-------------PPAATANGAA--AKRFANNTWG-RNN 83 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~------~~~~~~~~~~~~~-------------~~~~~gh~~~--~i~~s~~g~~-~s~ 83 (308)
.-++||+|+|..||+|+..-.. +..-.....+.|. -.-+.||+++ ++.|+|++.. +++
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA 285 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence 4689999999999999854321 0000000001111 1233499999 9999999977 999
Q ss_pred cCCCcEEEEECCCC--CCccc----ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc--eeeeEeeCcccceE
Q 021744 84 NFNNHSNNYRAGNS--KNSNI----NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVS 154 (308)
Q Consensus 84 ~~d~~i~vwd~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~ 154 (308)
+.|+++.+|..+.. -.... ...+.......+.|++++++ ++-+..|..++|-.++.. .+...+.||.+.|.
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~ 365 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK 365 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence 99999999987533 11110 11122233677889999877 777889999999843321 33445679999999
Q ss_pred EEEEeCCCCEEEEeeCCCcEEEEeCCC-CeEEEEEe----CCCeeEEEE-cC-CCEEEEEc-CCcEEEEEcCCC------
Q 021744 155 GITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVIN----LGGEVGCMI-SE-GPWIFIGV-TNFVKAWNTQTN------ 220 (308)
Q Consensus 155 ~~~~~~~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~----~~~~v~~~~-~~-~~~l~~~~-d~~i~~wd~~~~------ 220 (308)
+++|+|.|++|++.+.|-+-+++---. .+.-.++. |+....|+. -+ ...+++|. .+.+++|+....
T Consensus 366 dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~ 445 (764)
T KOG1063|consen 366 DVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLM 445 (764)
T ss_pred eeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHH
Confidence 999999999999999999999986541 11222222 666667763 33 33444444 556778764210
Q ss_pred -----------------------------------------------------------------------ceeeeeCCC
Q 021744 221 -----------------------------------------------------------------------TDLSLSGPV 229 (308)
Q Consensus 221 -----------------------------------------------------------------------~~~~~~~~~ 229 (308)
+...+.+|.
T Consensus 446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG 525 (764)
T KOG1063|consen 446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG 525 (764)
T ss_pred HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence 011456788
Q ss_pred CCEEEEEEeCC--EEEEEcCCC-----eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-c--eEEEEe
Q 021744 230 GQVYAMAVGND--LLFAGTQDG-----AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-S--FIMFIG 298 (308)
Q Consensus 230 ~~v~~~~~~~~--~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s--~~i~~~ 298 (308)
..|++++.+|+ ++|+++... .|++|+..+- ..++.+..|.-.|+. +|||||++|++.+ + ..+|-.
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W----~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW----LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch----hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 99999999998 888887643 4899998884 667789999999999 9999999999655 4 444444
Q ss_pred e
Q 021744 299 Q 299 (308)
Q Consensus 299 ~ 299 (308)
+
T Consensus 602 ~ 602 (764)
T KOG1063|consen 602 Q 602 (764)
T ss_pred e
Confidence 4
No 142
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3e-20 Score=168.42 Aligned_cols=243 Identities=12% Similarity=0.102 Sum_probs=184.7
Q ss_pred eEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC-e-eeccCC
Q 021744 11 RVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW-G-RNNNFN 86 (308)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~-~-~s~~~d 86 (308)
-.|++|-+++-+++.-.+||.|..||.|-+||...-.. ..+.+......-|++. .+.|++.+. . |+|+.|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc------CcchHHHhhhcccCCceeeeeccccCCceeeccCCC
Confidence 46788877777777778999999999999999776300 0112333445567777 799999877 5 999999
Q ss_pred CcEEEEECCCCCCcccc-cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCccc--ceEEEEEeCC
Q 021744 87 NHSNNYRAGNSKNSNIN-NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQK--VVSGITLPSG 161 (308)
Q Consensus 87 ~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~--~v~~~~~~~~ 161 (308)
|.|.|||++..+..... .......|.+++|...-.. ++++.+|.+.|||++.. +.+-.+..|.. .+..++|+|+
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCC
Confidence 99999999876544333 2223445888888766533 78899999999999988 55555554543 4778999998
Q ss_pred C-CEEEEeeCCC---cEEEEeCCC-CeEEEEEe-CCCeeEEE--Ec-CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCC
Q 021744 162 S-DKLYSGSKDE---TVRVWDCAS-GQCAGVIN-LGGEVGCM--IS-EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVG 230 (308)
Q Consensus 162 ~-~~l~s~s~dg---~v~~wd~~~-~~~~~~~~-~~~~v~~~--~~-~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~ 230 (308)
. ..+++++.|. .|.+||++. ..+++++. |..-+.++ ++ |.++|+++. |++|.+|+.++++.+ .+....+
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n 297 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN 297 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc
Confidence 6 5567776654 699999985 45677775 66666666 33 446777655 999999999999998 7777788
Q ss_pred CEEEEEEeCC---EEEEEcCCCeEEEEEcCCCC
Q 021744 231 QVYAMAVGND---LLFAGTQDGAILAWKFNVTT 260 (308)
Q Consensus 231 ~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~ 260 (308)
++..+.|+|. .|++++.||.|.||.+....
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999987 89999999999999998754
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.5e-18 Score=152.82 Aligned_cols=222 Identities=10% Similarity=0.094 Sum_probs=168.1
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCC-CCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNS-KNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG 148 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 148 (308)
.++|.|+|+. .+++.|+.||+|+.... +.+. ....+...+..++. ..+.+++++.+++|.+|....+ +.-..+.-
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-ti~~~g~~v~~ia~-~s~~f~~~s~~~tv~~y~fps~-~~~~iL~R 94 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-TIDISGELVSSIAC-YSNHFLTGSEQNTVLRYKFPSG-EEDTILAR 94 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCc-hhhccCceeEEEee-cccceEEeeccceEEEeeCCCC-Cccceeee
Confidence 6899999999 99999999999998554 2211 11112222333332 2235699999999999999877 33323333
Q ss_pred cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-
Q 021744 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL- 223 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~- 223 (308)
-+-++++++|+.+|++++.||.|-.|++-++.+......+. |.+++.++ .|++++|++.+ ||.|++||+.++.+.
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~ 174 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK 174 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhh
Confidence 45789999999999999999999999999999888777777 89999988 48899999776 999999999988765
Q ss_pred eeeC--------CCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc--ccCCCeEE-EEecCCCeEEEe
Q 021744 224 SLSG--------PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK--VHTDSNRA-HFSRDVTSLLGS 290 (308)
Q Consensus 224 ~~~~--------~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~-~~s~d~~~l~~s 290 (308)
++.+ ....+..++|+|+ .++..+.|+.|++|+.... ++...+. .+...++. .|+|.|+||+++
T Consensus 175 tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w----e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 175 TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW----ELQFKLRDKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc----eeheeecccccccceEEEEEcCCCcEEeee
Confidence 2221 1345778999999 8888899999999999886 5555554 33444677 999999999987
Q ss_pred e-ceEEEEee
Q 021744 291 V-SFIMFIGQ 299 (308)
Q Consensus 291 ~-s~~i~~~~ 299 (308)
. ...|.+|.
T Consensus 251 ~~~g~I~vWn 260 (933)
T KOG1274|consen 251 TLDGQILVWN 260 (933)
T ss_pred ccCCcEEEEe
Confidence 7 44444443
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.3e-18 Score=146.17 Aligned_cols=221 Identities=10% Similarity=0.095 Sum_probs=180.6
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeee-eeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIK-TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG 148 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 148 (308)
++||+.+.+. |.+-.||.|.+|++...=.......++.. .+..++|.+.++..+.+.+|.|.-||+.+. +++..+..
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l-k~~~~~d~ 108 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL-KQKYNIDS 108 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC-ceeEEecC
Confidence 7999998888 99999999999999764332223333333 388888888888899999999999999999 78888888
Q ss_pred cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCce
Q 021744 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTD 222 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~ 222 (308)
..+.|++++.+|.+..++.|+.||.+...+...++...... ..+.+.++. +++..+++|+ ||.|++||..+++.
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 88999999999999999999999988888888887665544 456777773 5677788888 99999999998876
Q ss_pred ee-----eeC----CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 223 LS-----LSG----PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 223 ~~-----~~~----~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
.. +.. ...-|+++.|..+ .+++|..-|+|.+||...+ .+++.+..|...|.+ +..+++.++++++
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc----chhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence 52 211 2335788988877 9999999999999999997 888999999999999 9999988888766
Q ss_pred -ceEEE
Q 021744 292 -SFIMF 296 (308)
Q Consensus 292 -s~~i~ 296 (308)
+..++
T Consensus 265 vd~~ii 270 (691)
T KOG2048|consen 265 VDPKII 270 (691)
T ss_pred CCCceE
Confidence 44443
No 145
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.6e-18 Score=140.74 Aligned_cols=197 Identities=15% Similarity=0.191 Sum_probs=154.7
Q ss_pred CCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCC------CcccccceeeeeeeeeeeecCCce--EEeeCC
Q 021744 61 PPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSK------NSNINNRAVIKTDILCRNWVQGNC--MYGEKC 128 (308)
Q Consensus 61 ~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d 128 (308)
.+...||.+. .++|+|-... ||||.|.+|.||++-.+. .....+.+|...+..+.+.|.... ++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 3566799999 8999997776 999999999999994322 112345788888999999998733 889999
Q ss_pred CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCC--eeEEE-EcCCCEE
Q 021744 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGG--EVGCM-ISEGPWI 204 (308)
Q Consensus 129 ~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~--~v~~~-~~~~~~l 204 (308)
.+|.+|++.++ +.+-++. |.+.|+++.|+.+|.++++.+.|+.|++||.++++.+..-. |++ +...+ ..++.++
T Consensus 154 n~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 154 NTVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred ceEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 99999999999 6666677 99999999999999999999999999999999999988875 433 34444 4677766
Q ss_pred EEEc----CCcEEEEEcCCCcee----eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCC
Q 021744 205 FIGV----TNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTT 260 (308)
Q Consensus 205 ~~~~----d~~i~~wd~~~~~~~----~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~ 260 (308)
.+|. +.++.+||....+.. .+.. ++.|.---|.++ ..++|-.|+.|+.|.+....
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 6663 669999998765432 3333 344554556777 56778889999999998864
No 146
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.2e-17 Score=124.77 Aligned_cols=229 Identities=11% Similarity=0.112 Sum_probs=167.5
Q ss_pred CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC--
Q 021744 24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK-- 98 (308)
Q Consensus 24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~-- 98 (308)
....+++.|..+|+|-+....+-..... -...+..-.+.++|.+. .++|. ... ++|+ ||.|+-|..+.-.
T Consensus 20 p~~~~l~agn~~G~iav~sl~sl~s~sa--~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es 94 (325)
T KOG0649|consen 20 PSKQYLFAGNLFGDIAVLSLKSLDSGSA--EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES 94 (325)
T ss_pred CcceEEEEecCCCeEEEEEehhhhcccc--CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh
Confidence 3456799999999999998654211000 00001112345788888 77887 224 5555 5999999873211
Q ss_pred -----Ccccccceee-----eeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEE
Q 021744 99 -----NSNINNRAVI-----KTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS 167 (308)
Q Consensus 99 -----~~~~~~~~~~-----~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 167 (308)
........+. -.+..+..-|.. ..++++.|+.++-||++++ +..++++||++-|.++.--.....++|
T Consensus 95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qils 173 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILS 173 (325)
T ss_pred ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceee
Confidence 1111111111 126666666655 5578889999999999999 899999999999999998556678999
Q ss_pred eeCCCcEEEEeCCCCeEEEEEe---CC--------CeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEE
Q 021744 168 GSKDETVRVWDCASGQCAGVIN---LG--------GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA 236 (308)
Q Consensus 168 ~s~dg~v~~wd~~~~~~~~~~~---~~--------~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~ 236 (308)
|++||++++||.+++++++.+. ++ ..+.++.-+..+++.|....+.+|.++..++.....-..++..+.
T Consensus 174 G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~ 253 (325)
T KOG0649|consen 174 GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVD 253 (325)
T ss_pred cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEee
Confidence 9999999999999999998886 11 224566678889998888899999999999886555677889999
Q ss_pred EeCCEEEEEcCCCeEEEEEcCC
Q 021744 237 VGNDLLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 237 ~~~~~l~~g~~dg~i~iwd~~~ 258 (308)
|..+.++++++.+.|.-|.+..
T Consensus 254 F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 254 FVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eecceEEEeccccceeeeeecc
Confidence 9988888888888999998875
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=4.8e-19 Score=140.45 Aligned_cols=230 Identities=13% Similarity=0.141 Sum_probs=166.4
Q ss_pred EEEeecCCCCCCCC--CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCeeeccCCCc
Q 021744 12 VFHRLGGGGGDGGG--GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWGRNNNFNNH 88 (308)
Q Consensus 12 ~~~~~~~~~~~~~~--~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~~s~~~d~~ 88 (308)
||....=+.-.++. -.++|+.+.|.-|.+||+-++.. .|.| ...........+ +++|+|||.++-++..+.
T Consensus 107 vydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~l-raSy-----~~ydh~de~taAhsL~Fs~DGeqlfaGykrc 180 (406)
T KOG2919|consen 107 VYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKL-RASY-----RAYDHQDEYTAAHSLQFSPDGEQLFAGYKRC 180 (406)
T ss_pred EEEEEeeeccccCCCccceeeeccccCceeeeecccccc-ccch-----hhhhhHHhhhhheeEEecCCCCeEeecccce
Confidence 44444443333444 46899999999999999988710 1100 001111112233 899999999988889999
Q ss_pred EEEEEC-CCCCCccc-c-----cceeeeeeeeeeeecCCc-e-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEe
Q 021744 89 SNNYRA-GNSKNSNI-N-----NRAVIKTDILCRNWVQGN-C-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLP 159 (308)
Q Consensus 89 i~vwd~-~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~ 159 (308)
||++|+ .++.--.. . ..+....+.+.+|+|... + +.|+....+-||.-... .++..+-+|.+.|+.+.|.
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWC 259 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEec
Confidence 999999 34432111 1 122233477788998774 3 88888888889887777 7888999999999999999
Q ss_pred CCCCEEEEeeC-CCcEEEEeCCC-CeEEEEEe-CCC----ee-EEEEcCCCEEEEEc-CCcEEEEEcCC-Ccee-eeeCC
Q 021744 160 SGSDKLYSGSK-DETVRVWDCAS-GQCAGVIN-LGG----EV-GCMISEGPWIFIGV-TNFVKAWNTQT-NTDL-SLSGP 228 (308)
Q Consensus 160 ~~~~~l~s~s~-dg~v~~wd~~~-~~~~~~~~-~~~----~v-~~~~~~~~~l~~~~-d~~i~~wd~~~-~~~~-~~~~~ 228 (308)
++|+.|.+|+. |-.|..||++. .+++..+. +.. .| ..+-+++++|++|. +|.|++||+++ +... .+..+
T Consensus 260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~ 339 (406)
T KOG2919|consen 260 EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY 339 (406)
T ss_pred cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence 99999999986 67899999996 45666655 222 12 23358899999996 99999999998 5544 67788
Q ss_pred CCCEEEEEEeCC--EEEEEcCC
Q 021744 229 VGQVYAMAVGND--LLFAGTQD 248 (308)
Q Consensus 229 ~~~v~~~~~~~~--~l~~g~~d 248 (308)
...++.++++|- ++++++..
T Consensus 340 sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 340 SDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccccceecCcccceeeeccCc
Confidence 999999999999 77777765
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=9.1e-19 Score=138.42 Aligned_cols=192 Identities=17% Similarity=0.245 Sum_probs=148.2
Q ss_pred eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744 111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (308)
Q Consensus 111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~ 189 (308)
..+|.|++-|.+ +.|+.||.|.|||+.|. .+-+.+.+|..+|.+++|+++|++|+|+|.|..|++||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 678999999977 88999999999999998 6888899999999999999999999999999999999999998887775
Q ss_pred CCCeeEEE-------------------------------------------------EcCCCEEEEEc-CCcEEEEEcCC
Q 021744 190 LGGEVGCM-------------------------------------------------ISEGPWIFIGV-TNFVKAWNTQT 219 (308)
Q Consensus 190 ~~~~v~~~-------------------------------------------------~~~~~~l~~~~-d~~i~~wd~~~ 219 (308)
...++... .+.|+++++|. .|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 33322110 01467888887 88999999999
Q ss_pred Ccee-eeeCCC-CCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC-----Ccccccceecc---ccCCCeEEEEecCCCeE
Q 021744 220 NTDL-SLSGPV-GQVYAMAVGND--LLFAGTQDGAILAWKFNVT-----TNCFEPAASLK---VHTDSNRAHFSRDVTSL 287 (308)
Q Consensus 220 ~~~~-~~~~~~-~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~---~~~~~v~~~~s~d~~~l 287 (308)
.+++ .+.-.. ..|..+.++.. .|+.-+.|+.|+.|++..- ....++.+.+. ....+-.+.||.||.|+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv 264 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYV 264 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEE
Confidence 9887 444333 67888888877 8999999999999998621 11112223333 22233344999999999
Q ss_pred EEee--ceEEEEeecCce
Q 021744 288 LGSV--SFIMFIGQNNKG 303 (308)
Q Consensus 288 ~~s~--s~~i~~~~~~~~ 303 (308)
+++. .-.+|+|..+-|
T Consensus 265 ~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 265 CAGSARAHALYIWEKSIG 282 (405)
T ss_pred EeccccceeEEEEecCCc
Confidence 8655 677888875543
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.7e-18 Score=136.45 Aligned_cols=238 Identities=9% Similarity=0.132 Sum_probs=158.1
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEE-ecC-CCe-eeccCCCcEEEEECCCCCCc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRF-ANN-TWG-RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~-s~~-g~~-~s~~~d~~i~vwd~~~~~~~ 100 (308)
|+..||||.|++++|||..... ..-.....-+.|.++ .+.| +|+ |+. |++++|++++||.-...+..
T Consensus 25 GRRmAtCSsDq~vkI~d~~~~s--------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~ 96 (361)
T KOG2445|consen 25 GRRMATCSSDQTVKIWDSTSDS--------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE 96 (361)
T ss_pred CceeeeccCCCcEEEEeccCCC--------CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence 7889999999999999954330 011223344567777 4555 565 666 99999999999986311111
Q ss_pred c--------cccceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCCc-----eeeeEee-------CcccceEEEE
Q 021744 101 N--------INNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGF-----KLLTQLE-------GHQKVVSGIT 157 (308)
Q Consensus 101 ~--------~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~~-----~~~~~~~-------~h~~~v~~~~ 157 (308)
. ..+......+..+.|.|.- ..++++.||.+|||+..+.. ++..+++ .+..+..|+.
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 0 0112223348888888865 23889999999999976442 2222333 4667788999
Q ss_pred EeCC---CCEEEEeeCC-----CcEEEEeCCCCe-E---EEEEe-CCCeeEEEE--cC----CCEEEEEc-CCcEEEEEc
Q 021744 158 LPSG---SDKLYSGSKD-----ETVRVWDCASGQ-C---AGVIN-LGGEVGCMI--SE----GPWIFIGV-TNFVKAWNT 217 (308)
Q Consensus 158 ~~~~---~~~l~s~s~d-----g~v~~wd~~~~~-~---~~~~~-~~~~v~~~~--~~----~~~l~~~~-d~~i~~wd~ 217 (308)
|+|. ..+|+.|+.+ +.++||....+. . +.++. +..++..++ |+ ..+|++++ || |+||.+
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 9974 3567777765 478899766432 2 22233 778888773 43 34677666 88 999998
Q ss_pred CCC--------------------cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccC
Q 021744 218 QTN--------------------TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273 (308)
Q Consensus 218 ~~~--------------------~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 273 (308)
+.. +.+ .+..|.++|+.+.|+-. .|++.+.||.|++|...-... +++...++...
T Consensus 256 ~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~-~kC~sv~~~e~ 333 (361)
T KOG2445|consen 256 KVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNL-WKCTSVLKAEG 333 (361)
T ss_pred eeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhh-heeeeEEeccC
Confidence 741 112 46789999999999877 899999999999998654321 35555555433
No 150
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=149.91 Aligned_cols=220 Identities=11% Similarity=0.102 Sum_probs=175.1
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEe-cC--CCe-eeccCCCcEEEEECCCCCC
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFA-NN--TWG-RNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s-~~--g~~-~s~~~d~~i~vwd~~~~~~ 99 (308)
+-.+|+|..-|++||++...- ........|+.. ++.|+ |+ .++ |+++.|.-|.|+|+...-.
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l------------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQEL------------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred cceecccCccCceEEEEehhh------------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 567899999999999998864 233344577777 88887 33 234 9999999999999976656
Q ss_pred cccccceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCCceeeeEeeC-----cccceEEEEEeCCCCEEEEeeCC
Q 021744 100 SNINNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEG-----HQKVVSGITLPSGSDKLYSGSKD 171 (308)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~s~d 171 (308)
+.+.+..|...+..+.|-..| ..++.+.|+.|..--.+.. ..-..+.. .+..++.|++.|..+++++++.|
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~-~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA-SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc-cCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence 666778888899999998877 3388999998865433211 11111211 24578999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEEe----CCCe-eEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--E
Q 021744 172 ETVRVWDCASGQCAGVIN----LGGE-VGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--L 241 (308)
Q Consensus 172 g~v~~wd~~~~~~~~~~~----~~~~-v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~ 241 (308)
..|+|||+++++..+.|+ +++. +... -|.+.+++++. |+++.++|.-+++++ ++.+|...|+.+.|.+| .
T Consensus 618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchh
Confidence 999999999999999998 3333 3333 47899999654 999999999999999 89999999999999999 9
Q ss_pred EEEEcCCCeEEEEEcCC
Q 021744 242 LFAGTQDGAILAWKFNV 258 (308)
Q Consensus 242 l~~g~~dg~i~iwd~~~ 258 (308)
|++.+.||.|.+|.+..
T Consensus 698 lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 698 LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred heeecCCceEEEEECch
Confidence 99999999999999865
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=1.2e-17 Score=132.56 Aligned_cols=273 Identities=13% Similarity=0.136 Sum_probs=192.3
Q ss_pred CCceEEecCCCeEEEeecCCCC--CC-CCCcccccCCCCCCccccccc-eeEE------ecCCCe-eeccCCCcEEEEEC
Q 021744 26 GGLSTADTRQKVCNYWRAGKCN--RF-PCPYLHRELPLPPAATANGAA-AKRF------ANNTWG-RNNNFNNHSNNYRA 94 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~--~~-~~~~~~~~~~~~~~~~gh~~~-~i~~------s~~g~~-~s~~~d~~i~vwd~ 94 (308)
|+-|.+-+.|..+++|+....- +. +.+.....++......|-+-- .+++ -|+..+ |+.+.|.-|++||.
T Consensus 61 GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wda 140 (406)
T KOG2919|consen 61 GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDA 140 (406)
T ss_pred CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeec
Confidence 6779999999999999965431 11 122221111111111111111 3444 377778 99999999999999
Q ss_pred CCCCCccccc-ceeee---eeeeeeeecCCceEEeeCCCeEEEEEc-CCCce-eeeE-----eeCcccceEEEEEeCCC-
Q 021744 95 GNSKNSNINN-RAVIK---TDILCRNWVQGNCMYGEKCKFLHSWTV-GDGFK-LLTQ-----LEGHQKVVSGITLPSGS- 162 (308)
Q Consensus 95 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~g~~d~~i~iwd~-~~~~~-~~~~-----~~~h~~~v~~~~~~~~~- 162 (308)
-+++....-. ..|.. ...++.|+|+|..+.++....|+++|+ +.+.. .... -.+..+-|.+++|+|-.
T Consensus 141 ftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~ 220 (406)
T KOG2919|consen 141 FTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS 220 (406)
T ss_pred cccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC
Confidence 8886432211 22222 267899999999999999999999999 44421 1111 23457889999999954
Q ss_pred CEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc--CCcEEEEEcCCCcee--eeeCCCC-CEEE
Q 021744 163 DKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV--TNFVKAWNTQTNTDL--SLSGPVG-QVYA 234 (308)
Q Consensus 163 ~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~--d~~i~~wd~~~~~~~--~~~~~~~-~v~~ 234 (308)
..++.++....+-|+.-....++..+- +++-|+-+ ..+|+.|++|. +..|.+||++.-... .+..|.. .-..
T Consensus 221 ~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQR 300 (406)
T KOG2919|consen 221 KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQR 300 (406)
T ss_pred cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccce
Confidence 589999999999999988888888776 77777765 68899999987 779999999976443 5655654 3334
Q ss_pred EEE--eCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744 235 MAV--GND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNN 301 (308)
Q Consensus 235 ~~~--~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~ 301 (308)
|.| .|+ +|++|+.||.|++||+.... ..+..+..|...++. +++|-=.+++++..-.+|..+..
T Consensus 301 I~FDld~~~~~LasG~tdG~V~vwdlk~~g---n~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~~d 369 (406)
T KOG2919|consen 301 ILFDLDPKGEILASGDTDGSVRVWDLKDLG---NEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYPKD 369 (406)
T ss_pred EEEecCCCCceeeccCCCccEEEEecCCCC---CcccccccccccccceecCcccceeeeccCceeecCCCc
Confidence 445 455 99999999999999999842 567777788888988 99998667777766666665543
No 152
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=5.6e-19 Score=134.94 Aligned_cols=194 Identities=16% Similarity=0.156 Sum_probs=146.5
Q ss_pred eeeeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeC--CCCEEEEeeCCCcEEEEeCCC
Q 021744 107 VIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 107 ~~~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~v~~wd~~~ 181 (308)
|+..+........| ++++++.|++|+|+.++... +++.+|.||.++|+.++|.. -|..|+++++||.|.||.-++
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 44444444433344 45999999999999998663 67889999999999999964 689999999999999999888
Q ss_pred CeEEEEEe---CCCeeEEEE--cC--CCEEEEEc-CCcEEEEEcCCC-c---eeeeeCCCCCEEEEEEeCC---------
Q 021744 182 GQCAGVIN---LGGEVGCMI--SE--GPWIFIGV-TNFVKAWNTQTN-T---DLSLSGPVGQVYAMAVGND--------- 240 (308)
Q Consensus 182 ~~~~~~~~---~~~~v~~~~--~~--~~~l~~~~-d~~i~~wd~~~~-~---~~~~~~~~~~v~~~~~~~~--------- 240 (308)
++-.+... |...+.++. |. |-.|++++ ||.|.+.+.+.. . ......|.-.|++++|.|.
T Consensus 90 g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~ 169 (299)
T KOG1332|consen 90 GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQ 169 (299)
T ss_pred CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccccc
Confidence 75433333 677788773 33 44566554 999999988765 2 2256689999999999873
Q ss_pred -------EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCC----CeEEEee-ceEEEEeecCc
Q 021744 241 -------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDV----TSLLGSV-SFIMFIGQNNK 302 (308)
Q Consensus 241 -------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~----~~l~~s~-s~~i~~~~~~~ 302 (308)
.|++|+.|..|+||+..+.+ +..-.++.+|.+.|+. +|.|.- ..|++++ +..++++..++
T Consensus 170 ~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 170 GPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 49999999999999999874 3666779999999999 999964 2334322 66776665443
No 153
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=2e-17 Score=145.68 Aligned_cols=266 Identities=17% Similarity=0.183 Sum_probs=154.8
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
..+|-|..+|+|.++|...+ ..+.. ++.-.+. +++|..||.. |+|...|.+.+||++..+....
T Consensus 215 DVVaiG~~~G~ViifNlK~d-----------kil~s-Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 215 DVVAIGLENGTVIIFNLKFD-----------KILMS-FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eEEEEeccCceEEEEEcccC-----------cEEEE-EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee
Confidence 57888999999999998876 11111 1111122 6999999998 8899999999999988776665
Q ss_pred ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEEEEEe-CCCCEEEEeeCCCcEEEE
Q 021744 103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLP-SGSDKLYSGSKDETVRVW 177 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~v~~w 177 (308)
....|...+....|.+.... ++++.|+.+++|-.+++. ..++.-.||..+..++.|. .++..+.+++.|++.+.+
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 66667666666666666654 666677766665443221 2233334555555555554 344445555555544443
Q ss_pred eCCC-----------------------------------------------------------------CeE-EEEEe--
Q 021744 178 DCAS-----------------------------------------------------------------GQC-AGVIN-- 189 (308)
Q Consensus 178 d~~~-----------------------------------------------------------------~~~-~~~~~-- 189 (308)
++.. ... ...+.
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence 2210 000 00000
Q ss_pred ------CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-ee---eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744 190 ------LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SL---SGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (308)
Q Consensus 190 ------~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~---~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~ 256 (308)
......|+++.|++.+.|. .|.|.+|++.+|-.. .+ ..|..+|+.++...- .+++++.+|.+++||+
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 1123344455555555554 455555555555443 22 345555555555443 4555555555555554
Q ss_pred CCCCc-------------------------------------ccccceeccccCCCeEE-EEecCCCeEEEee---ceEE
Q 021744 257 NVTTN-------------------------------------CFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIM 295 (308)
Q Consensus 257 ~~~~~-------------------------------------~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i 295 (308)
..... ..+.++.+.+|.+.++. +|||||++|++++ ++.+
T Consensus 523 ~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 523 KKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred CCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 43220 01556778899999999 9999999999666 4455
Q ss_pred EEeecCcee
Q 021744 296 FIGQNNKGV 304 (308)
Q Consensus 296 ~~~~~~~~~ 304 (308)
|-......+
T Consensus 603 wDlpt~~lI 611 (910)
T KOG1539|consen 603 WDLPTGTLI 611 (910)
T ss_pred EeccCccee
Confidence 544444433
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=8.8e-18 Score=133.53 Aligned_cols=225 Identities=15% Similarity=0.230 Sum_probs=161.9
Q ss_pred eeEEecC----CCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceee
Q 021744 71 AKRFANN----TWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLL 143 (308)
Q Consensus 71 ~i~~s~~----g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~ 143 (308)
.++++-+ ..+ |.|+.-|.|||.|+.+++.. ....+|...+..+.+.|+. ..+++++|..|++|++++. .++
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~Cv 171 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-VCV 171 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-eEE
Confidence 5666543 224 88889999999999877554 3667888899999999998 3499999999999999998 666
Q ss_pred eEe---eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe------CC-----------------------
Q 021744 144 TQL---EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN------LG----------------------- 191 (308)
Q Consensus 144 ~~~---~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~------~~----------------------- 191 (308)
..+ .||.+.|.++.|++++.+++||+.|.++++|++...+....++ .+
T Consensus 172 ~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr 251 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR 251 (385)
T ss_pred EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence 554 6799999999999999999999999999999998543222111 00
Q ss_pred CeeEEEEcCCCEEEE-EcCCcEEEEEcCC-Cce-------------e-eeeCCCCCEEEEEEeCC----EEEEEcCCCeE
Q 021744 192 GEVGCMISEGPWIFI-GVTNFVKAWNTQT-NTD-------------L-SLSGPVGQVYAMAVGND----LLFAGTQDGAI 251 (308)
Q Consensus 192 ~~v~~~~~~~~~l~~-~~d~~i~~wd~~~-~~~-------------~-~~~~~~~~v~~~~~~~~----~l~~g~~dg~i 251 (308)
..+.|+-.=|.++++ +.++.|..|-... .+. . ++.-....++-+.|.=| .||.|.+.|.|
T Consensus 252 nyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 252 NYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred chHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence 011111012456665 4488999997621 111 1 33444556777777655 89999999999
Q ss_pred EEEEcCCCCcccccceecc--ccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 252 LAWKFNVTTNCFEPAASLK--VHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 252 ~iwd~~~~~~~~~~~~~~~--~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
.+||++...+ ....++. .....|+. +||.|+..|+.-+ +..+|-+.
T Consensus 332 ~vwdL~~~ep--~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 332 YVWDLDNNEP--PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EEEECCCCCC--ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 9999998643 1222332 23457888 9999999998655 77777664
No 155
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=4.5e-17 Score=128.48 Aligned_cols=185 Identities=15% Similarity=0.185 Sum_probs=142.7
Q ss_pred eeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE
Q 021744 107 VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~ 185 (308)
.+..+..+.|++.+.. +.++.||.+++||+... .....++ |..++.+++|.+ ...+++|+.||.|+.+|+++++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 4455888999987754 88889999999999887 5555555 899999999986 568999999999999999999988
Q ss_pred EEEeCCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcc
Q 021744 186 GVINLGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC 262 (308)
Q Consensus 186 ~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 262 (308)
..-.|...+.|+. +....+++|+ |++|++||.+.....--......|.++....+.|+.|+.|..|.+||+++..
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~-- 166 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD-- 166 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc--
Confidence 8888999999984 3355566665 9999999999855552223344899999999999999999999999999863
Q ss_pred cccceec-cccCCCeEE-EEecCCC-eEEEeeceEEEE
Q 021744 263 FEPAASL-KVHTDSNRA-HFSRDVT-SLLGSVSFIMFI 297 (308)
Q Consensus 263 ~~~~~~~-~~~~~~v~~-~~s~d~~-~l~~s~s~~i~~ 297 (308)
.+.+.. ..-.-.+++ ++-|++. ++++|.+..+.+
T Consensus 167 -~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 167 -EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred -chhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 222211 133456777 6667554 555666666655
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=7e-17 Score=131.70 Aligned_cols=255 Identities=15% Similarity=0.147 Sum_probs=177.2
Q ss_pred ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC-----
Q 021744 28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN----- 99 (308)
Q Consensus 28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~----- 99 (308)
.+|||+.|..||+|......-..-- ........+..|..+ +++|+|+|.. |||+.+++|.+|-...-++
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence 7999999999999987765110000 000112345577777 8999999999 9999999999998762111
Q ss_pred ----------cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEe
Q 021744 100 ----------SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG 168 (308)
Q Consensus 100 ----------~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 168 (308)
.....++|...+..+++++++.+ ++++-|+.+++||+..+ +....+.+|...|..++|.|-++++++-
T Consensus 105 e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 105 EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWDPLNQYVASK 183 (434)
T ss_pred hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeeccccccccceeecchhhhhhhhh
Confidence 11123456667888999999977 89999999999999999 8999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCeEEEEEe-----------CCCeeE---------------EEEcCCCEEEEE--c---CC-----cE
Q 021744 169 SKDETVRVWDCASGQCAGVIN-----------LGGEVG---------------CMISEGPWIFIG--V---TN-----FV 212 (308)
Q Consensus 169 s~dg~v~~wd~~~~~~~~~~~-----------~~~~v~---------------~~~~~~~~l~~~--~---d~-----~i 212 (308)
+.|...+.+.+...+.+.... .++... ++.|+|.++++. . .+ ..
T Consensus 184 s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~t 263 (434)
T KOG1009|consen 184 SSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTS 263 (434)
T ss_pred ccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeecee
Confidence 999988888777654433221 111111 224678777742 1 22 33
Q ss_pred EEEEcCCCc--eeeeeCCCCCEEEEEEeC------------------C--EEEEEcCCCeEEEEEcCCCCcccccceecc
Q 021744 213 KAWNTQTNT--DLSLSGPVGQVYAMAVGN------------------D--LLFAGTQDGAILAWKFNVTTNCFEPAASLK 270 (308)
Q Consensus 213 ~~wd~~~~~--~~~~~~~~~~v~~~~~~~------------------~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (308)
++|+-+... ...+.....++..+.++| - .+|.++. ..|++||.++. .++....
T Consensus 264 Yvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~----~P~~~v~ 338 (434)
T KOG1009|consen 264 YVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTL----EPLAVVD 338 (434)
T ss_pred EeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccc----cceEEEe
Confidence 455433221 114444444555555544 2 4556655 48999999886 5555443
Q ss_pred -ccCCCeEE-EEecCCCeEEEee
Q 021744 271 -VHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 271 -~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
-|-..++. +|++||.+|+.|+
T Consensus 339 nihy~~iTDiaws~dg~~l~vSS 361 (434)
T KOG1009|consen 339 NIHYSAITDIAWSDDGSVLLVSS 361 (434)
T ss_pred eeeeeeecceeecCCCcEEEEec
Confidence 57888999 9999999998665
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-16 Score=126.65 Aligned_cols=256 Identities=9% Similarity=0.064 Sum_probs=177.1
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
|.++|.|..||.|-+||..+. .....+.+|..+ +++||++|.. +|+|.|..|.+||+-.+.++
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l-- 100 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTF------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL-- 100 (405)
T ss_pred cceeeeeccCCcEEEEEcccc------------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce--
Confidence 678999999999999999887 234456678777 8999999999 99999999999999888655
Q ss_pred ccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCceeeeEee--Cc-ccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLE--GH-QKVVSGITLPSGSDKLYSGSKDETVRVW 177 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~~~~~~~~--~h-~~~v~~~~~~~~~~~l~s~s~dg~v~~w 177 (308)
....+...+..+.|.|... ++..--+..-.+-++..+....-... +. ...-.+..|++.|+++++|...|.+.++
T Consensus 101 ~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 101 KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 4455666788899988763 33333333334444443311110000 00 0111233588999999999999999999
Q ss_pred eCCCCeEEEEEeCC--CeeEEE--EcCCCEEEEEc-CCcEEEEEcCCC-------cee---eee--CCCCCEEEEEEeCC
Q 021744 178 DCASGQCAGVINLG--GEVGCM--ISEGPWIFIGV-TNFVKAWNTQTN-------TDL---SLS--GPVGQVYAMAVGND 240 (308)
Q Consensus 178 d~~~~~~~~~~~~~--~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~-------~~~---~~~--~~~~~v~~~~~~~~ 240 (308)
|.++.+++..++.. ..+..+ ...+++++... |..|+.|+++.- +.. .+. -..-+-.+++|+.+
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 99999999888833 344444 45688888755 999999998621 111 111 11224467889988
Q ss_pred --EEEEEc-CCCeEEEEEcCCCCcccccceeccccCCC-eEE-EEecCCCeEEEeeceEEEEee
Q 021744 241 --LLFAGT-QDGAILAWKFNVTTNCFEPAASLKVHTDS-NRA-HFSRDVTSLLGSVSFIMFIGQ 299 (308)
Q Consensus 241 --~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~-~~s~d~~~l~~s~s~~i~~~~ 299 (308)
++++++ ....++||.-..+ .+++.+++..+. ... .|.|-...+++-.+..+++|.
T Consensus 261 geYv~a~s~~aHaLYIWE~~~G----sLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEKSIG----SLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWA 320 (405)
T ss_pred ccEEEeccccceeEEEEecCCc----ceeeeecCCchhheeecccccceeeeeeccCCceEEEE
Confidence 555444 4667999999988 888888887743 344 898887777755566666654
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.6e-17 Score=128.55 Aligned_cols=261 Identities=17% Similarity=0.147 Sum_probs=165.7
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC-CCe--eeccCCCcEEEEECCCCCCc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN-TWG--RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~-g~~--~s~~~d~~i~vwd~~~~~~~ 100 (308)
-+.+|++-+.++||++|..++ .....+.+|... .++|..+ +.+ .+|+.||+||+||+...+..
T Consensus 40 e~~vav~lSngsv~lyd~~tg------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTG------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred ceeEEEEecCCeEEEEeccch------------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence 367899999999999999887 122333444444 5788764 444 89999999999999654332
Q ss_pred -ccccceeeeee-eeeeeecCCce-EEee----CCCeEEEEEcCCCceeeeEe-eCcccceEEEEEeCC-CCEEEEeeCC
Q 021744 101 -NINNRAVIKTD-ILCRNWVQGNC-MYGE----KCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSG-SDKLYSGSKD 171 (308)
Q Consensus 101 -~~~~~~~~~~~-~~~~~~~~~~~-~~g~----~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~s~d 171 (308)
......+.... .+......+.. ..|. .+-.|.+||++..+++++.+ ..|.+.|+++.|+|. .++|+|||.|
T Consensus 108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 22222233222 22222222333 3332 36789999999885545554 569999999999995 5789999999
Q ss_pred CcEEEEeCCCC----eEEEEEeCCCeeEEE-E-cCC--CEEEEEcCCcEEEEEcCCCcee-eeeCC------------CC
Q 021744 172 ETVRVWDCASG----QCAGVINLGGEVGCM-I-SEG--PWIFIGVTNFVKAWNTQTNTDL-SLSGP------------VG 230 (308)
Q Consensus 172 g~v~~wd~~~~----~~~~~~~~~~~v~~~-~-~~~--~~l~~~~d~~i~~wd~~~~~~~-~~~~~------------~~ 230 (308)
|.|.++|++.. ..+.++.+...|.++ + .++ ++.......+..+|+++.+.+. .+... ..
T Consensus 188 GLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d 267 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD 267 (376)
T ss_pred ceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence 99999999853 344556677766665 3 444 4444667999999999887644 22111 11
Q ss_pred CEEEEEEeCC----EEEEEcCCCeEEEEEcCC--CCcccccceeccc-cCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 231 QVYAMAVGND----LLFAGTQDGAILAWKFNV--TTNCFEPAASLKV-HTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 231 ~v~~~~~~~~----~l~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~-~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
.+.... +|. ..+.|+.-+...++-+.. .....+.+..+.+ |...|+. .|...+.++.+++ +..+.+|.
T Consensus 268 Y~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 268 YVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred heeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 222221 232 334444356666655442 2222355566665 6777888 8877777777666 66666665
No 159
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=4.1e-17 Score=143.66 Aligned_cols=256 Identities=9% Similarity=0.015 Sum_probs=160.9
Q ss_pred CceeEEEeecCCCCCCCCCCceEEec----CCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-
Q 021744 8 GNKRVFHRLGGGGGDGGGGGLSTADT----RQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG- 80 (308)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~s~s----~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~- 80 (308)
...+|+..+.+..+..+.-=.+++.. .+..|++||.+..+ ...+..|... ..+|+|||+.
T Consensus 152 ~~d~i~~~ltg~~g~f~~ria~v~~~~~~~~~~~i~i~d~dg~~-------------~~~lt~~~~~v~~p~wSPDG~~l 218 (429)
T PRK01742 152 VSDEVFEKLTAIRGAFRTRIAYVVQKNGGSQPYEVRVADYDGFN-------------QFIVNRSSQPLMSPAWSPDGSKL 218 (429)
T ss_pred HHHHHHHHHcCCCCccCCEEEEEEEEcCCCceEEEEEECCCCCC-------------ceEeccCCCccccceEcCCCCEE
Confidence 34455555666554433321122221 24799999987651 1112223322 6899999998
Q ss_pred eeccCC---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEe-eCCCeEEEE--EcCCCceeeeEeeCcccce
Q 021744 81 RNNNFN---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYG-EKCKFLHSW--TVGDGFKLLTQLEGHQKVV 153 (308)
Q Consensus 81 ~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g-~~d~~i~iw--d~~~~~~~~~~~~~h~~~v 153 (308)
+..+.+ .+|.+||+.+++... ............|+|+|.. +++ ..+|.+.|| |+.++ + ...+..+...+
T Consensus 219 a~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~-~-~~~lt~~~~~~ 294 (429)
T PRK01742 219 AYVSFENKKSQLVVHDLRSGARKV--VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG-T-PSQLTSGAGNN 294 (429)
T ss_pred EEEEecCCCcEEEEEeCCCCceEE--EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC-C-eEeeccCCCCc
Confidence 666543 469999998764321 1111222345789999975 444 467765555 66555 2 45566677788
Q ss_pred EEEEEeCCCCEEEEee-CCCcEEEEeCCCC-eEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCC
Q 021744 154 SGITLPSGSDKLYSGS-KDETVRVWDCASG-QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQ 231 (308)
Q Consensus 154 ~~~~~~~~~~~l~s~s-~dg~v~~wd~~~~-~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~ 231 (308)
....|+||++.|+..+ .++...+|++... .....+.+......++|+++.|+......+.+||+.+++...+... ..
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~-~~ 373 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST-FL 373 (429)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC-CC
Confidence 8999999999876554 5788888876532 2222233222223357899998876645677799998876644322 13
Q ss_pred EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC
Q 021744 232 VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD 283 (308)
Q Consensus 232 v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d 283 (308)
..++.|+|+ .|+.++.++.+.+|++..... +.+..+..|...+.. +|+|-
T Consensus 374 ~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G--~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 374 DESPSISPNGIMIIYSSTQGLGKVLQLVSADG--RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEEEEECCC--CceEEccCCCCCCCCcccCCC
Confidence 356789999 888888889888887643221 667778788887887 99874
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=1.4e-16 Score=131.81 Aligned_cols=221 Identities=10% Similarity=0.027 Sum_probs=159.4
Q ss_pred eeEEecCCCe---eeccCCCcEEEEECCCCCCccc---ccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCc-e
Q 021744 71 AKRFANNTWG---RNNNFNNHSNNYRAGNSKNSNI---NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-K 141 (308)
Q Consensus 71 ~i~~s~~g~~---~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~-~ 141 (308)
+++|+|..+. |+|...|+|-+||+.+.+.... .-..|...|..+.|+|.+. .++.+.||+|++-|++... +
T Consensus 191 ~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e 270 (498)
T KOG4328|consen 191 SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE 270 (498)
T ss_pred EEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhH
Confidence 8999998773 8888999999999953332211 2245666799999999883 4889999999999998762 2
Q ss_pred eeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE-EEEEe-CCCeeEEEE--cC-CCEEEEEc-CCcEEEE
Q 021744 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVIN-LGGEVGCMI--SE-GPWIFIGV-TNFVKAW 215 (308)
Q Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~-~~~~~-~~~~v~~~~--~~-~~~l~~~~-d~~i~~w 215 (308)
.+..+......+..+.|+.+...++.+..=|...+||++++.. ...+. |...|..+. |- ..+|++++ |++.++|
T Consensus 271 ~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 271 EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeee
Confidence 2233333456678888998888888888888999999998655 44444 666777774 32 45666666 9999999
Q ss_pred EcCCCce-----eeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc------ccCCCeEEEEec
Q 021744 216 NTQTNTD-----LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK------VHTDSNRAHFSR 282 (308)
Q Consensus 216 d~~~~~~-----~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~s~ 282 (308)
|++.... +....|...|.++.|||+ .|++.+.|..|+|||..--.....+..++. .|-.+..++|.|
T Consensus 351 D~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P 430 (498)
T KOG4328|consen 351 DLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP 430 (498)
T ss_pred ehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC
Confidence 9986432 345679999999999999 999999999999999841111023344333 122334449999
Q ss_pred CCCeEEEee
Q 021744 283 DVTSLLGSV 291 (308)
Q Consensus 283 d~~~l~~s~ 291 (308)
+..+++++.
T Consensus 431 ~~~li~vg~ 439 (498)
T KOG4328|consen 431 DYNLIVVGR 439 (498)
T ss_pred CccEEEEec
Confidence 888887655
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6e-17 Score=138.09 Aligned_cols=260 Identities=11% Similarity=0.094 Sum_probs=179.3
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCC----
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSK---- 98 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~---- 98 (308)
.|..||+|+.||++|+|.+.++ .|-.. .+.. + .-.+++|+|.+.. +.++.+..+.|-+..-|.
T Consensus 411 ~G~wlasGsdDGtvriWEi~Tg---Rcvr~---~~~d----~-~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATG---RCVRT---VQFD----S-EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEV 479 (733)
T ss_pred CcceeeecCCCCcEEEEEeecc---eEEEE---Eeec----c-eeEEEEecCCCCceeEEEEecCceEEeCccccchhhh
Confidence 4778999999999999998887 12111 1111 1 1117889988877 444444445554442221
Q ss_pred -----------------------------Ccc---cccceeeeeeeeeeeecCCce-EE---eeCCCeEEEEEcCCCcee
Q 021744 99 -----------------------------NSN---INNRAVIKTDILCRNWVQGNC-MY---GEKCKFLHSWTVGDGFKL 142 (308)
Q Consensus 99 -----------------------------~~~---~~~~~~~~~~~~~~~~~~~~~-~~---g~~d~~i~iwd~~~~~~~ 142 (308)
... .....|.+.+..+.++-.|.+ ++ .+....|.|+++... ..
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-~s 558 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-KS 558 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc-cc
Confidence 000 011223344677788888866 22 234567889998766 34
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC-eeEEE--EcCCCEEEEEc-CCcEEEEEcC
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCM--ISEGPWIFIGV-TNFVKAWNTQ 218 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~-d~~i~~wd~~ 218 (308)
...|+...+.|.++.|+|...+|+.++. ..|++||+...+.++++.... .+..+ .+.|..|++|+ |+.+.+||+.
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 4556556788999999999888887776 689999999877777666443 34444 46777777766 9999999987
Q ss_pred CCc--eeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC-----CcccccceeccccCCC----eEE-EEecCC
Q 021744 219 TNT--DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT-----TNCFEPAASLKVHTDS----NRA-HFSRDV 284 (308)
Q Consensus 219 ~~~--~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~----v~~-~~s~d~ 284 (308)
-.. .+++..|...+++++|++. +|++|+.||++.||.-.-- .+..-+++.+.+|... |.. .|+|..
T Consensus 638 lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q 717 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ 717 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC
Confidence 663 3378899999999999999 9999999999999964321 1224567778888765 777 999999
Q ss_pred CeEEEee-ceEEEE
Q 021744 285 TSLLGSV-SFIMFI 297 (308)
Q Consensus 285 ~~l~~s~-s~~i~~ 297 (308)
.+|++++ +..|-+
T Consensus 718 pWLfsAGAd~tirl 731 (733)
T KOG0650|consen 718 PWLFSAGADGTIRL 731 (733)
T ss_pred ceEEecCCCceEEe
Confidence 9999766 445443
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.7e-16 Score=135.43 Aligned_cols=229 Identities=10% Similarity=0.112 Sum_probs=169.9
Q ss_pred ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCC----------
Q 021744 64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKC---------- 128 (308)
Q Consensus 64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d---------- 128 (308)
++||++. +|...|.|.. |+|+.||+||||.+.++..+ ........+.+++|.|.+.. +....+
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv--r~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV--RTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE--EEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 3599999 8999999999 99999999999999999776 33344456888899888743 222222
Q ss_pred -----------------------CeEEEEEcCCC---ceeeeEeeCcccceEEEEEeCCCCEEEEeeCC---CcEEEEeC
Q 021744 129 -----------------------KFLHSWTVGDG---FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDC 179 (308)
Q Consensus 129 -----------------------~~i~iwd~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~v~~wd~ 179 (308)
+.+..|.-... ..-++..-.|...|..+.|+..|.+|++...+ ..|.|+++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 22333332211 01122333588999999999999999988664 47889998
Q ss_pred CCCeEEEEEe-CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744 180 ASGQCAGVIN-LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (308)
Q Consensus 180 ~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i 253 (308)
........|. ..+.+.++ .|...+|++++...|++||+..++.. .+......|.+++++|. .|+.|+.|+.+..
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~W 633 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCW 633 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEE
Confidence 8766655554 44445444 46677899999999999999987766 56666779999999996 8999999999999
Q ss_pred EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744 254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFI 297 (308)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~ 297 (308)
||+.-.. ++.+++.-|...++. +|++--.++++++ +..+++
T Consensus 634 fDldlss---kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 634 FDLDLSS---KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred EEcccCc---chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 9998753 788899999999999 9988766666544 344433
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=9.7e-15 Score=127.53 Aligned_cols=250 Identities=20% Similarity=0.325 Sum_probs=179.4
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccc--cc-eeEE-ecCCC-e-ee-ccCCCcEEEEECCCC
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANG--AA-AKRF-ANNTW-G-RN-NNFNNHSNNYRAGNS 97 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~--~~-~i~~-s~~g~-~-~s-~~~d~~i~vwd~~~~ 97 (308)
.+..++.++.|+.+.+|+..... .....+.++. .. .+.+ ++++. . +. ...|+.+++|+....
T Consensus 76 ~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 76 DGELLLSGSSDGTIKLWDLDNGE-----------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred CCcEEEEecCCCcEEEEEcCCCc-----------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 35667888899999999987761 0111111211 11 3344 78887 4 44 445999999999762
Q ss_pred CCcccccceeeeeeeeeeeecCCce-EEeeC-CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC-EEEEeeCCCcE
Q 021744 98 KNSNINNRAVIKTDILCRNWVQGNC-MYGEK-CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETV 174 (308)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~v 174 (308)
.........|...+..+.+.+++.. +.++. |+.+++|++.+. ..+..+.+|...|.+++|+|++. .+++++.|+.|
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 2222345666677889999999965 66664 999999999986 67888888999999999999987 56666999999
Q ss_pred EEEeCCCCeEEE-EEe-CCCe-eEEEEcCCCEEEEEc-CCcEEEEEcCCCce-e-eeeCCCCCEEEEEEeCC--EEEEEc
Q 021744 175 RVWDCASGQCAG-VIN-LGGE-VGCMISEGPWIFIGV-TNFVKAWNTQTNTD-L-SLSGPVGQVYAMAVGND--LLFAGT 246 (308)
Q Consensus 175 ~~wd~~~~~~~~-~~~-~~~~-v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~-~-~~~~~~~~v~~~~~~~~--~l~~g~ 246 (308)
++||...++.+. .+. +... +..+.+++.+++++. ++.+++||++.... . .+..|...+.++.|.|+ .+++++
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 999999777777 454 3333 335567776777555 99999999997764 3 44678899999999995 666688
Q ss_pred CCCeEEEEEcCCCCcccccceec--cccCCCeEE-EEecCCCeEEEe
Q 021744 247 QDGAILAWKFNVTTNCFEPAASL--KVHTDSNRA-HFSRDVTSLLGS 290 (308)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~v~~-~~s~d~~~l~~s 290 (308)
.|+.+.+||.... ...... ..|...+.. .|.+++..++.+
T Consensus 304 ~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 304 SDGTVRLWDLETG----KLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred CCCcEEEEEcCCC----ceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 8889999988876 333333 367776777 774332455544
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.7e-17 Score=136.87 Aligned_cols=205 Identities=19% Similarity=0.245 Sum_probs=155.0
Q ss_pred Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC---Cc----ccccceeeeeeeeeeeecCCce-EEeeCCCeE
Q 021744 63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK---NS----NINNRAVIKTDILCRNWVQGNC-MYGEKCKFL 131 (308)
Q Consensus 63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i 131 (308)
.++.|... .++|.|.... ++++.|++|++|++.... .. .-..++|+.+|.++.+...+.. .+|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 44566555 7889999888 999999999999993211 11 1134678888999999988854 999999999
Q ss_pred EEEEcCCC---------ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe----CCC------
Q 021744 132 HSWTVGDG---------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN----LGG------ 192 (308)
Q Consensus 132 ~iwd~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~----~~~------ 192 (308)
+.|++... ......+.||++.|+.+++++....|++|+.||+|++|+.....+ .++. +.-
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 99965421 134567889999999999999988999999999999998776544 1111 000
Q ss_pred -------------------------------------------ee-EEEE-cCCCEEEEEc-CCcEEEEEcCCCcee-ee
Q 021744 193 -------------------------------------------EV-GCMI-SEGPWIFIGV-TNFVKAWNTQTNTDL-SL 225 (308)
Q Consensus 193 -------------------------------------------~v-~~~~-~~~~~l~~~~-d~~i~~wd~~~~~~~-~~ 225 (308)
.+ ..++ +...+.+++. |+.|+++|..++.++ ..
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 00 0111 2344555555 889999999999988 78
Q ss_pred eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744 226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH 272 (308)
Q Consensus 226 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 272 (308)
..|...++++++.|+ +|++++.|+.+++|.+..+ .++.....|
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k----~~~~es~~~ 572 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK----TCVLESTAH 572 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccch----heeeccccc
Confidence 889999999999999 9999999999999999875 555555444
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.3e-16 Score=141.47 Aligned_cols=234 Identities=14% Similarity=0.125 Sum_probs=156.8
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
..++.+++.||.||||+.......+.+....-.++..-..+..+. -+.|.....+ ++++.-..|||||.+..+....
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 468999999999999986544222222222222222222222222 4566666666 6666688999999975543322
Q ss_pred ccceeeeeeeeeee-ecCCce-EEeeCCCeEEEEEcCCCc--eeeeEeeCcccc--eEEEEEeCCC-CEEEEeeCCCcEE
Q 021744 103 NNRAVIKTDILCRN-WVQGNC-MYGEKCKFLHSWTVGDGF--KLLTQLEGHQKV--VSGITLPSGS-DKLYSGSKDETVR 175 (308)
Q Consensus 103 ~~~~~~~~~~~~~~-~~~~~~-~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~--v~~~~~~~~~-~~l~s~s~dg~v~ 175 (308)
........+..+.- .+.|+. +.|..||.|++||.+... ..+...+.|.+. |..+.+.+.| ..|++|+.||.|+
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence 22222222333332 233444 889999999999987542 357778889887 9999999866 4599999999999
Q ss_pred EEeCCCCeEEEEE--e----CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCceeeee-------CCCCCEEEEEEeCC
Q 021744 176 VWDCASGQCAGVI--N----LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLS-------GPVGQVYAMAVGND 240 (308)
Q Consensus 176 ~wd~~~~~~~~~~--~----~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~~~~-------~~~~~v~~~~~~~~ 240 (308)
+||++.......+ . .++..+++ .....++++|+.+.|++|++...+...+. .....+.|++|+|.
T Consensus 1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred EEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecch
Confidence 9999974222222 1 23346666 35567888887899999999876554322 22357799999999
Q ss_pred --EEEEEcCCCeEEEEEcCCC
Q 021744 241 --LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 241 --~l~~g~~dg~i~iwd~~~~ 259 (308)
.+|+|+.|.+|.||....+
T Consensus 1363 ~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1363 RLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hHhhhhccCCceEEEeecCCc
Confidence 8899999999999987764
No 166
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.1e-16 Score=126.32 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=139.1
Q ss_pred ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC--CCCEEEEeeCCCcEEEEeCCCCeEEEEEe---C-CCee
Q 021744 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCASGQCAGVIN---L-GGEV 194 (308)
Q Consensus 121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~-~~~v 194 (308)
..+++...|.|++||..++ +.+..+++++..+..+.|.. ....+.+|+.||+|++||+++......+. + ..+.
T Consensus 42 ~vav~lSngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eEEEEecCCeEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 3477888999999999998 89999999999999999976 45679999999999999999876666555 2 2355
Q ss_pred EEEEc--CCCEEEEEc-----CCcEEEEEcCCCce-e--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCc
Q 021744 195 GCMIS--EGPWIFIGV-----TNFVKAWNTQTNTD-L--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN 261 (308)
Q Consensus 195 ~~~~~--~~~~l~~~~-----d~~i~~wd~~~~~~-~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~ 261 (308)
.|+.. .++++++|. +-.|.+||.|..+. + ....|.+.|+++.|+|. +|++||-||.|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 66654 566777764 45899999998876 4 45689999999999997 999999999999999987532
Q ss_pred ccccceeccccCCCeEE-EEecCC--CeEEEee--ceEEEEeecCc
Q 021744 262 CFEPAASLKVHTDSNRA-HFSRDV--TSLLGSV--SFIMFIGQNNK 302 (308)
Q Consensus 262 ~~~~~~~~~~~~~~v~~-~~s~d~--~~l~~s~--s~~i~~~~~~~ 302 (308)
...+.....|...|.. .|..++ +....+. +..+|-+...+
T Consensus 201 -eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 201 -EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred -hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 2333334457777888 999887 5444444 56666555433
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=5.7e-17 Score=147.48 Aligned_cols=225 Identities=10% Similarity=0.112 Sum_probs=166.7
Q ss_pred eeEEecCCCe-----eeccCCCcEEEEECCCC---C--CcccccceeeeeeeeeeeecCCc-e-EEeeCCCeEEEEEcCC
Q 021744 71 AKRFANNTWG-----RNNNFNNHSNNYRAGNS---K--NSNINNRAVIKTDILCRNWVQGN-C-MYGEKCKFLHSWTVGD 138 (308)
Q Consensus 71 ~i~~s~~g~~-----~s~~~d~~i~vwd~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~ 138 (308)
.++|.+.|.. |.|..||.|-+||...- . .+......|.+.|..+.|.+... . ++|+.||.|.|||++.
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn 148 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK 148 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC
Confidence 6888765543 88889999999998642 1 12223456778899999998774 4 8999999999999987
Q ss_pred CceeeeEe--eCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCe--eEEE-E-cCC--CEEEEEc
Q 021744 139 GFKLLTQL--EGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN-LGGE--VGCM-I-SEG--PWIFIGV 208 (308)
Q Consensus 139 ~~~~~~~~--~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~--v~~~-~-~~~--~~l~~~~ 208 (308)
..... .+ ..-.+.|.+++|+..- ..|++++.+|.+.|||++..+++-.+. +... +..+ | |+. ++++++.
T Consensus 149 ~~tP~-~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 149 PETPF-TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred cCCCC-CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence 63222 22 2246789999999754 567999999999999999988877776 3222 3333 3 443 2333333
Q ss_pred -CC--cEEEEEcCCCce--eeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744 209 -TN--FVKAWNTQTNTD--LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H 279 (308)
Q Consensus 209 -d~--~i~~wd~~~~~~--~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~ 279 (308)
|+ .|.+||+|.-.. ..+.+|...|.++.|++. ++++++.|+.|.+|+.+++ +.+.++....+++.- .
T Consensus 228 dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg----Evl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG----EVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred CCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc----eEeeecCCCCcceeeee
Confidence 44 899999986533 367899999999999986 9999999999999999998 888888888888888 9
Q ss_pred EecCCCeEE-Ee-e--ceEEEEeec
Q 021744 280 FSRDVTSLL-GS-V--SFIMFIGQN 300 (308)
Q Consensus 280 ~s~d~~~l~-~s-~--s~~i~~~~~ 300 (308)
|+|...-++ ++ - .+.||....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeec
Confidence 999776444 33 2 455665553
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=4.7e-16 Score=121.85 Aligned_cols=200 Identities=13% Similarity=0.113 Sum_probs=142.8
Q ss_pred CCCcEEEEECCCCC--CcccccceeeeeeeeeeeecCCce--EEe----eCC---CeEEEEEcCCCc--------eeeeE
Q 021744 85 FNNHSNNYRAGNSK--NSNINNRAVIKTDILCRNWVQGNC--MYG----EKC---KFLHSWTVGDGF--------KLLTQ 145 (308)
Q Consensus 85 ~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~g----~~d---~~i~iwd~~~~~--------~~~~~ 145 (308)
.|+.|.+-+++... ........+.+.+..++-+|.... ++. +.. -.+-||.+.... +.+..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 45777777775433 222223344455777776766532 111 111 246789987542 12223
Q ss_pred ee-CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE-EEEEeC------CCeeEE--EE--cCCCEEEEEcCCcEE
Q 021744 146 LE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVINL------GGEVGC--MI--SEGPWIFIGVTNFVK 213 (308)
Q Consensus 146 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~-~~~~~~------~~~v~~--~~--~~~~~l~~~~d~~i~ 213 (308)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+.. ....++ .+ .++..+++..|+++.
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~ 196 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQ 196 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEE
Confidence 33 3557899999999998888876 78999999997665 444431 111221 12 368899999999999
Q ss_pred EEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeE
Q 021744 214 AWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSL 287 (308)
Q Consensus 214 ~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l 287 (308)
.||+++..+. .-.+|...|..+.|.|+ +|++|++||.|+|||.+..+ .+++++.+|..+|++ +|+|....|
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCccceE
Confidence 9999988766 45678889999999999 89999999999999999874 889999999999999 999976655
Q ss_pred E
Q 021744 288 L 288 (308)
Q Consensus 288 ~ 288 (308)
+
T Consensus 274 i 274 (370)
T KOG1007|consen 274 I 274 (370)
T ss_pred E
Confidence 5
No 169
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2.4e-14 Score=122.22 Aligned_cols=259 Identities=9% Similarity=0.079 Sum_probs=154.7
Q ss_pred eEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECC-CCCCccccc
Q 021744 29 STADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAG-NSKNSNINN 104 (308)
Q Consensus 29 ~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~-~~~~~~~~~ 104 (308)
+++...|+.|++|+.....+ ...+ ......... .++++|++++ +++..++.|.+|+++ ++.......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~--l~~~-------~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~ 75 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGA--LTLL-------QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE 75 (330)
T ss_pred EEEcCCCCCEEEEEECCCCc--eeee-------eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee
Confidence 45567799999999853200 0000 101111112 6899999998 444568889999996 232211111
Q ss_pred ceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEEEEEeCCCCEEE-EeeCCCcEEEEe
Q 021744 105 RAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWD 178 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~v~~wd 178 (308)
.........+.++|+++. ++...++.|.+|++.+.. +.+..+. +......++++|++++++ +...++.|.+||
T Consensus 76 ~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 76 SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFT 154 (330)
T ss_pred ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence 112223567889999976 333358999999997431 1223333 234567788999998885 555679999999
Q ss_pred CCCCeEEE-------EEeCC-Ce-eEEEEcCCCEEEEEc--CCcEEEEEcCC--Cce--e-eeeCC------CCCEEEEE
Q 021744 179 CASGQCAG-------VINLG-GE-VGCMISEGPWIFIGV--TNFVKAWNTQT--NTD--L-SLSGP------VGQVYAMA 236 (308)
Q Consensus 179 ~~~~~~~~-------~~~~~-~~-v~~~~~~~~~l~~~~--d~~i~~wd~~~--~~~--~-~~~~~------~~~v~~~~ 236 (308)
+.+...+. ..... .+ -..+.++++++++.. +++|.+||+.. ++. . .+... ......+.
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 98643221 11111 12 224468899988654 78999999973 332 2 22211 12334688
Q ss_pred EeCC--EEEEEc-CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEe
Q 021744 237 VGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIG 298 (308)
Q Consensus 237 ~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~ 298 (308)
++|+ +++++. .++.|.+|++.......+.+...... ..... .|+|||++|+++. .+.+|..
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 9999 666664 47899999997542212233333222 23334 9999999999765 3455544
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=1.6e-15 Score=123.47 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=144.9
Q ss_pred ccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCC------ceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCc
Q 021744 103 NNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDET 173 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~------~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~ 173 (308)
...+|...+..+.|+|.+.. ++|++|.+|.||++... .+++..|.+|...|--++|+|.. +.|+|++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 45788888999999987754 88999999999998754 25677899999999999999965 56899999999
Q ss_pred EEEEeCCCCeEEEEEeCCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC-EEEEEEeCC-EEEEEc-
Q 021744 174 VRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ-VYAMAVGND-LLFAGT- 246 (308)
Q Consensus 174 v~~wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~-v~~~~~~~~-~l~~g~- 246 (308)
|.+||+.+++.+.++.|+..+.+++ .+|.++++.+ |+.|++||.++++.+ .-.+|.+. ...+.|..+ .+++.+
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999999999999988774 6799999766 999999999999988 44577652 344556666 444444
Q ss_pred ---CCCeEEEEEcCCCCcccccc--eeccccCCCeEE-EEecCCCeEEEee
Q 021744 247 ---QDGAILAWKFNVTTNCFEPA--ASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 247 ---~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
.++.+-+||-.+-+ +++ .++ ...+.|.. -|.+|...+...+
T Consensus 236 sr~seRq~aLwdp~nl~---eP~~~~el-DtSnGvl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLE---EPIALQEL-DTSNGVLLPFYDPDTSIVYLCG 282 (472)
T ss_pred ccccccceeccCccccc---CcceeEEe-ccCCceEEeeecCCCCEEEEEe
Confidence 36789999977643 332 223 34567777 8889988776554
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=1.7e-16 Score=126.36 Aligned_cols=220 Identities=12% Similarity=0.113 Sum_probs=162.8
Q ss_pred CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCC
Q 021744 24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~ 99 (308)
.+++++|.++.-|.|||-|..++ .....++||..+ .+.+.|+... +++|.|.+||+|++.+...
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSG------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred CCCeeEEeecceeEEEEEecchh------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE
Confidence 36789999999999999998876 445567888888 8999999865 9999999999999987765
Q ss_pred ccc--ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc-----eee----------------e------EeeCc
Q 021744 100 SNI--NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF-----KLL----------------T------QLEGH 149 (308)
Q Consensus 100 ~~~--~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~-----~~~----------------~------~~~~h 149 (308)
+.. -..+|...|.++.|+.++.. ++++.|..|++|++.... +.. . +-.-|
T Consensus 171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 433 34678888999999999976 899999999999997431 000 0 11235
Q ss_pred ccceEEEEEeCCCCEEEEeeCCCcEEEEeC-CCCeEEEEE-------------e-CCCeeEEE----EcCCCEEEEEc-C
Q 021744 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDC-ASGQCAGVI-------------N-LGGEVGCM----ISEGPWIFIGV-T 209 (308)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~-~~~~~~~~~-------------~-~~~~v~~~----~~~~~~l~~~~-d 209 (308)
...|-|+.|- |++++|-|-++.|..|.. +-++.+... . ....+.-+ -+-.+.|+.|. .
T Consensus 251 rnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred cchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCC
Confidence 6666666665 468999999999999987 222222222 1 11111111 13467788777 8
Q ss_pred CcEEEEEcCCCcee---eee--CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcC
Q 021744 210 NFVKAWNTQTNTDL---SLS--GPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (308)
Q Consensus 210 ~~i~~wd~~~~~~~---~~~--~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~ 257 (308)
|.|.+||++..++. ++. .....|...+|+.| +|+..++|++|--||..
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 89999999988763 332 22457999999999 88888999999999864
No 172
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.69 E-value=4.2e-15 Score=128.90 Aligned_cols=257 Identities=13% Similarity=0.115 Sum_probs=170.5
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCC-----
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSK----- 98 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~----- 98 (308)
..+.+++|+.|+.|++|..... . ......+.+|...+++++..-.. .....|+++++||.+..+
T Consensus 68 ~~a~~vsG~sD~~v~lW~l~~~-~---------~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~ 137 (764)
T KOG1063|consen 68 IVAEMVSGDSDGRVILWKLRDE-Y---------LIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLA 137 (764)
T ss_pred ccceEEEccCCCcEEEEEEeeh-h---------eEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeeh
Confidence 3348999999999999987722 0 11122234455556666655555 334778888888874322
Q ss_pred --------------------------------------------CcccccceeeeeeeeeeeecCCc----eEEeeCCCe
Q 021744 99 --------------------------------------------NSNINNRAVIKTDILCRNWVQGN----CMYGEKCKF 130 (308)
Q Consensus 99 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~d~~ 130 (308)
.....+.+|..-+..+.|...+. .++++.|..
T Consensus 138 ~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y 217 (764)
T KOG1063|consen 138 VLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY 217 (764)
T ss_pred heehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE
Confidence 00012234444466666655442 288999999
Q ss_pred EEEEEcCCCc--------------------eeeeE----------eeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744 131 LHSWTVGDGF--------------------KLLTQ----------LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 131 i~iwd~~~~~--------------------~~~~~----------~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~ 180 (308)
||||.+.-+. ....+ +.||++.|.++.|+|.+..|+++|.|.++.+|...
T Consensus 218 IRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd 297 (764)
T KOG1063|consen 218 IRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPD 297 (764)
T ss_pred EEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecC
Confidence 9999874221 01111 23899999999999999999999999999999776
Q ss_pred CC--eEEEEEe---CC----CeeEEEE-cCCCEEEE-EcCCcEEEEEcCCC----ceeeeeCCCCCEEEEEEeCC--EEE
Q 021744 181 SG--QCAGVIN---LG----GEVGCMI-SEGPWIFI-GVTNFVKAWNTQTN----TDLSLSGPVGQVYAMAVGND--LLF 243 (308)
Q Consensus 181 ~~--~~~~~~~---~~----~~v~~~~-~~~~~l~~-~~d~~i~~wd~~~~----~~~~~~~~~~~v~~~~~~~~--~l~ 243 (308)
+. --+.... .. +-..+++ +++..+++ |..|..++|-.... +...+.+|...|.+++|+|. +|+
T Consensus 298 ~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 298 ENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred CccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEE
Confidence 54 2222222 11 2234444 56666665 45999999983332 12257799999999999998 999
Q ss_pred EEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 244 AGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 244 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
+.+.|.+-|+|---..+..+..+..-+.|...+.| +|-+....+++++
T Consensus 378 svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA 426 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA 426 (764)
T ss_pred EeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence 99999999999766333334555556678889999 8887433444444
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.69 E-value=1.4e-15 Score=119.19 Aligned_cols=216 Identities=12% Similarity=0.075 Sum_probs=152.2
Q ss_pred ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEec--CCCeeeccCCCcEEEEECCCCCCcccc
Q 021744 28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFAN--NTWGRNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~--~g~~~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
.+|+-. |..|-+|+.....+.... .+.+... +|+.. .-+|+| +|+.+....|++++.||+.+.......
T Consensus 137 klasm~-dn~i~l~~l~ess~~vae-----v~ss~s~-e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI 209 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAE-----VLSSESA-EMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI 209 (370)
T ss_pred eeEEec-cCceEEEEcccCcchhee-----ecccccc-cccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch
Confidence 344443 899999998876221111 1111111 12222 567887 555577778999999999877666666
Q ss_pred cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCC
Q 021744 104 NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~ 180 (308)
...|...++.+.|.|...+ ++++.||.|++||.+..+.++.++.+|.-.|+++.|+|. .+++++++.|..|.+|...
T Consensus 210 ~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 210 EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 7788888999999999866 899999999999999776889999999999999999985 4678999999999999877
Q ss_pred CCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcC
Q 021744 181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN 257 (308)
Q Consensus 181 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~ 257 (308)
+-.....+..+...... ++. -+...++ -+..+++.++..|++.|++++|+.- +||+-+.||++.|=.+.
T Consensus 290 svSSE~qi~~~~dese~-e~~-----dseer~k--pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESES-EDE-----DSEERVK--PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccC-cch-----hhHHhcc--cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 54332233211110000 000 0000111 2445566678899999999999865 89999999999987766
Q ss_pred C
Q 021744 258 V 258 (308)
Q Consensus 258 ~ 258 (308)
.
T Consensus 362 r 362 (370)
T KOG1007|consen 362 R 362 (370)
T ss_pred h
Confidence 4
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=5.7e-17 Score=143.03 Aligned_cols=226 Identities=19% Similarity=0.212 Sum_probs=170.0
Q ss_pred cccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc
Q 021744 65 TANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF 140 (308)
Q Consensus 65 ~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~ 140 (308)
.||-++ |..|...|.+ ++|+.|..++||..+++..+ ....+|...+..++.+..+.. ++++.|..|++|-+.++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~- 264 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG- 264 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC-
Confidence 488877 8889999999 99999999999998877654 356788888888888777755 88999999999999999
Q ss_pred eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE--------------EEEeCCC--------------
Q 021744 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA--------------GVINLGG-------------- 192 (308)
Q Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~--------------~~~~~~~-------------- 192 (308)
.++..+.+|++.|++++|+|-. +.+.||++++||.+-.-.+ ..+....
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea 340 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA 340 (1113)
T ss_pred chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence 8999999999999999999854 7889999999998821111 1110000
Q ss_pred e---eEE-EEcCCCEEE------------EEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeE
Q 021744 193 E---VGC-MISEGPWIF------------IGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAI 251 (308)
Q Consensus 193 ~---v~~-~~~~~~~l~------------~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i 251 (308)
. ..+ .+.+..+++ +.. +..+.+|++.++++. .+.+|...+..+.++|- +..+++.||..
T Consensus 341 ~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 341 RNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred ccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 0 000 011111222 222 456789999999887 78899999999999986 77789999999
Q ss_pred EEEEcCCCCccccccee-ccccCCCeEEEEecCCCeEEEee-ceEEEEeec
Q 021744 252 LAWKFNVTTNCFEPAAS-LKVHTDSNRAHFSRDVTSLLGSV-SFIMFIGQN 300 (308)
Q Consensus 252 ~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~s~d~~~l~~s~-s~~i~~~~~ 300 (308)
.|||+-.+ .+++. ..+|...+.+.||+||+.++.+- -..+||...
T Consensus 421 ~iwdi~eg----~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 421 IIWDIWEG----IPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred EeeecccC----CcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 99999987 33333 24677777779999999888665 355666543
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=8.6e-15 Score=119.38 Aligned_cols=229 Identities=13% Similarity=0.131 Sum_probs=165.0
Q ss_pred CCccccccc--eeEEecCCCe-eeccCCCcEEEEECC------CCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeE
Q 021744 62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAG------NSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFL 131 (308)
Q Consensus 62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i 131 (308)
.-+.+|.+. ++.|+.++.. |+|+.|..+++|.++ +.+++......|...+.++.|...+.. .+|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 345688888 8999999988 999999999999984 456665555666677999999888766 788999999
Q ss_pred EEEEcCCCceeeeEeeC--cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe-EEEEE---eCCCee-EEEE-cC-CC
Q 021744 132 HSWTVGDGFKLLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-CAGVI---NLGGEV-GCMI-SE-GP 202 (308)
Q Consensus 132 ~iwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~-~~~~~---~~~~~v-~~~~-~~-~~ 202 (308)
.+.|+++. +.+..+.. ..+.|+.+..+|..+.+++.+.++.|.+||.+..+ ....+ ..+... +..+ |. ..
T Consensus 130 I~HDiEt~-qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETK-QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred Eeeecccc-eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 99999998 56655541 23599999999999999999999999999998755 22222 122222 2223 33 33
Q ss_pred EEEEEc-CCcEEEEEcCCCc-------------------------------------------------eeeee-CCC--
Q 021744 203 WIFIGV-TNFVKAWNTQTNT-------------------------------------------------DLSLS-GPV-- 229 (308)
Q Consensus 203 ~l~~~~-d~~i~~wd~~~~~-------------------------------------------------~~~~~-~~~-- 229 (308)
+|++.. .+-+.+||.+..+ +..++ .|.
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 445544 5677788765331 11111 111
Q ss_pred -----CCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCc-------------------ccccceeccccCCCeEE-EEecC
Q 021744 230 -----GQVYAMAVGND-LLFAGTQDGAILAWKFNVTTN-------------------CFEPAASLKVHTDSNRA-HFSRD 283 (308)
Q Consensus 230 -----~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~~~v~~-~~s~d 283 (308)
..+.+++|-.+ .+++|+.+-.|++|.+..... ....+..+++|...++. .|+|.
T Consensus 289 GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H 368 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH 368 (609)
T ss_pred cceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC
Confidence 25677888888 899999999999999864221 11234567799999999 99999
Q ss_pred CCeEEEee
Q 021744 284 VTSLLGSV 291 (308)
Q Consensus 284 ~~~l~~s~ 291 (308)
..+|++|+
T Consensus 369 ~~~l~SSG 376 (609)
T KOG4227|consen 369 NNLLVSSG 376 (609)
T ss_pred cceEeccc
Confidence 87777777
No 176
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4.6e-15 Score=121.83 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=128.4
Q ss_pred eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744 111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (308)
Q Consensus 111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~ 189 (308)
..+++|..+|.. ++|+.||++|+|+.... ..+.....|.+.|.++.|+||++.|++.+.| ..++|+.+++..+....
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 477899999766 89999999999997766 4555667799999999999999999999999 99999999997666554
Q ss_pred CCCe---e-EEEE-cCC---C-EEEEEc--CCcEEEEEcCCCce----e--eeeCCCCCEEEEEEeCC--EEEEEcCCCe
Q 021744 190 LGGE---V-GCMI-SEG---P-WIFIGV--TNFVKAWNTQTNTD----L--SLSGPVGQVYAMAVGND--LLFAGTQDGA 250 (308)
Q Consensus 190 ~~~~---v-~~~~-~~~---~-~l~~~~--d~~i~~wd~~~~~~----~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~ 250 (308)
..+. . .|-+ .++ . ++++.. -+.|..||+..... . +...-...|.+++.+++ +++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 2111 1 1222 222 2 334332 44666666543322 1 22223447999999999 9999999999
Q ss_pred EEEEEcCCCCcccccceec-cccCCCeEE-EEecCCCeEE
Q 021744 251 ILAWKFNVTTNCFEPAASL-KVHTDSNRA-HFSRDVTSLL 288 (308)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~-~~~~~~v~~-~~s~d~~~l~ 288 (308)
|.|++..+- +.++-. +.|...|+. .|+||.++++
T Consensus 305 Vai~~~~~l----q~~~~vk~aH~~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 305 VAIYDAKSL----QRLQYVKEAHLGFVTGLTFSPDSRYLA 340 (398)
T ss_pred EEEEEecee----eeeEeehhhheeeeeeEEEcCCcCccc
Confidence 999999885 544443 479999999 9999999998
No 177
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.5e-15 Score=124.65 Aligned_cols=188 Identities=13% Similarity=0.082 Sum_probs=133.4
Q ss_pred CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~ 100 (308)
+..|+.+++++.|+++|+|+.... .+.......|..- ++.|+|||+. ++-+.| ..+||+++++..+
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~-----------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSM-----------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcc-----------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence 344689999999999999996655 3333333333333 8999999999 999999 8999999988544
Q ss_pred cccc-ceeeeeeeeeeeecCC-----ce-EEeeCCCeEEEEEcCCCce----eeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744 101 NINN-RAVIKTDILCRNWVQG-----NC-MYGEKCKFLHSWTVGDGFK----LLTQLEGHQKVVSGITLPSGSDKLYSGS 169 (308)
Q Consensus 101 ~~~~-~~~~~~~~~~~~~~~~-----~~-~~g~~d~~i~iwd~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s 169 (308)
.... .........|.|..++ .+ +.....+.|+.|++..... ..++.......|++++++++|++++.|+
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 3222 1112226788898887 22 3334556677776653311 1222222345899999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcC
Q 021744 170 KDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ 247 (308)
Q Consensus 170 ~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~ 247 (308)
.||.|.+++..+-++++..+ ..|...|+.+.|+|+ ++++-+.
T Consensus 301 ~dGsVai~~~~~lq~~~~vk------------------------------------~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVK------------------------------------EAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred cCCcEEEEEeceeeeeEeeh------------------------------------hhheeeeeeEEEcCCcCccccccc
Confidence 99999999988766654443 357778899999998 7888888
Q ss_pred CCeEEEEEcCC
Q 021744 248 DGAILAWKFNV 258 (308)
Q Consensus 248 dg~i~iwd~~~ 258 (308)
|....+..+.-
T Consensus 345 ~~~~~v~~l~v 355 (398)
T KOG0771|consen 345 DNEAAVTKLAV 355 (398)
T ss_pred CCceeEEEEee
Confidence 88888877664
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=8.8e-15 Score=113.40 Aligned_cols=221 Identities=16% Similarity=0.164 Sum_probs=150.7
Q ss_pred CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEecCCCeeeccCCCcEEEEECCCCC--
Q 021744 24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFANNTWGRNNNFNNHSNNYRAGNSK-- 98 (308)
Q Consensus 24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~~g~~~s~~~d~~i~vwd~~~~~-- 98 (308)
..+.++.+|..-|.+++|..++. .+.+. .+++... .+..-|++...+-+.|..+.+|++.-+.
T Consensus 23 qa~~rL~sg~~~G~V~~w~lqt~-----------r~~~~-~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i 90 (323)
T KOG0322|consen 23 QANERLMSGLSVGIVKMWVLQTE-----------RDLPL-IRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFI 90 (323)
T ss_pred ccchhhhcccccceEEEEEeecC-----------ccchh-hhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceE
Confidence 34667999999999999998876 22221 2222222 3445566555888889999999885321
Q ss_pred ----------------------Ccccc--------ccee--------------------eeeeeeeee-ecCCc---eEE
Q 021744 99 ----------------------NSNIN--------NRAV--------------------IKTDILCRN-WVQGN---CMY 124 (308)
Q Consensus 99 ----------------------~~~~~--------~~~~--------------------~~~~~~~~~-~~~~~---~~~ 124 (308)
..... ...| .+.+.+... ...+. .+.
T Consensus 91 ~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla 170 (323)
T KOG0322|consen 91 SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA 170 (323)
T ss_pred EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEE
Confidence 00000 0000 000111121 11122 166
Q ss_pred eeCCCeEEEEEcCCCce---------eeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC--eE--E--EEEe
Q 021744 125 GEKCKFLHSWTVGDGFK---------LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QC--A--GVIN 189 (308)
Q Consensus 125 g~~d~~i~iwd~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~--~~--~--~~~~ 189 (308)
|-++|.+.+||+.++.+ .......|+.+|.++.+.+.-..=++|+.+..+..|.++.. .+ . .+++
T Consensus 171 GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 171 GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 88999999999998621 12233469999999999987666788888889999988743 21 1 1222
Q ss_pred CCCee-EEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744 190 LGGEV-GCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (308)
Q Consensus 190 ~~~~v-~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~ 256 (308)
+++.- ..+-+|++++++++ |+.|++|..++..++ .++.|...|++++|+|+ ++|+++.|++|.+|++
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 33322 23458999999766 999999999999988 88999999999999999 9999999999999987
No 179
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=1.1e-14 Score=125.39 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=148.4
Q ss_pred ecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCc------ccc
Q 021744 32 DTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNS------NIN 103 (308)
Q Consensus 32 ~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~------~~~ 103 (308)
++..|.|-|++...-.|-|- -..+....|..-..+.|.|=... |.+..|+.|++|.+..+... ...
T Consensus 599 ~g~gG~iai~el~~PGrLPD------gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~ 672 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPD------GVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI 672 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCc------ccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee
Confidence 45567999999775422110 01111111111116777774444 99999999999999654322 123
Q ss_pred cceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 104 NRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
+..|...+..+.|.|-. ..++++.|-+|++||+.+. +....+.+|++.|..++|+|+|+.+++.+.||+|++|+.++
T Consensus 673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred eecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 35566668999999875 3388999999999999998 67788999999999999999999999999999999999987
Q ss_pred Ce-EEEEEe--CCCe-eE-EEEcCCCEEEE-EcC----CcEEEEEcCCCcee-----eeeCCCCCEEEEEEeCC---EEE
Q 021744 182 GQ-CAGVIN--LGGE-VG-CMISEGPWIFI-GVT----NFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND---LLF 243 (308)
Q Consensus 182 ~~-~~~~~~--~~~~-v~-~~~~~~~~l~~-~~d----~~i~~wd~~~~~~~-----~~~~~~~~v~~~~~~~~---~l~ 243 (308)
++ +++.-+ .+.. .. .+..+++++++ |.| .+|.+||..+-... .+....+ +.--.+.+| +|+
T Consensus 752 ~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfl 830 (1012)
T KOG1445|consen 752 REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFL 830 (1012)
T ss_pred CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-cccccccCCCceEEE
Confidence 54 444433 1111 12 22468888774 433 47889987654321 1111111 111223344 889
Q ss_pred EEcCCCeEEEEEcCCCC
Q 021744 244 AGTQDGAILAWKFNVTT 260 (308)
Q Consensus 244 ~g~~dg~i~iwd~~~~~ 260 (308)
+|-.|..|++|.+-..+
T Consensus 831 tGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 831 TGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ecCCCceEEEEEecCCC
Confidence 99999999999987754
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.2e-13 Score=121.36 Aligned_cols=264 Identities=14% Similarity=0.111 Sum_probs=186.3
Q ss_pred CCCceEEecCCCeEEEeecCC--CCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 25 GGGLSTADTRQKVCNYWRAGK--CNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~--~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
.++++|++-.||.|.+|+.-. ...+.|..+|.-..... +++|+++|.+ .||+..+.+-+|.+++++.
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~--------~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-- 285 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN--------SLSFSSDGAYLLSGGREGVLVLWQLETGKK-- 285 (792)
T ss_pred ccceEEEeccCCcEEEEeccccccccccceEEEecccccc--------eeEEecCCceEeecccceEEEEEeecCCCc--
Confidence 467899999999999998554 44566666665321111 7899999999 9999999999999988862
Q ss_pred cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC-----------cccceEEEEEeCCCCEEEEee
Q 021744 102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG-----------HQKVVSGITLPSGSDKLYSGS 169 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~~l~s~s 169 (308)
+.+......+..+.++|++.. ....+|+.|.+..+.+. ....++.+ ..+-.+.++++|..+.++-.+
T Consensus 286 qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~ 364 (792)
T KOG1963|consen 286 QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG 364 (792)
T ss_pred ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch-hhhhhccCccCCCccccccccccceeEEEcCCCCceeecC
Confidence 344555566888999999966 67778999999887654 22222222 234567889999778889999
Q ss_pred CCCcEEEEeCCCCeEEEEEe------CCCe------eEEE--EcCCCEEEEE---------cCC--cEEEEEcCCCce--
Q 021744 170 KDETVRVWDCASGQCAGVIN------LGGE------VGCM--ISEGPWIFIG---------VTN--FVKAWNTQTNTD-- 222 (308)
Q Consensus 170 ~dg~v~~wd~~~~~~~~~~~------~~~~------v~~~--~~~~~~l~~~---------~d~--~i~~wd~~~~~~-- 222 (308)
..+.|.+||+-+.+.+..+. +.+. ++.+ ...|.++++. .|+ .+++|-....+.
T Consensus 365 ~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~ 444 (792)
T KOG1963|consen 365 HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTF 444 (792)
T ss_pred CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCccee
Confidence 99999999999988777765 1111 1222 2347888764 133 678897654432
Q ss_pred --e--eeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCC------CCcccccceeccccCCCeEE-EEecCCCeE
Q 021744 223 --L--SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNV------TTNCFEPAASLKVHTDSNRA-HFSRDVTSL 287 (308)
Q Consensus 223 --~--~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l 287 (308)
. ....|...+...++.+. .+++++.||.+++|-+.. ....+.+...-.-|..++.. +|+.||..|
T Consensus 445 ~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll 524 (792)
T KOG1963|consen 445 ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL 524 (792)
T ss_pred EEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE
Confidence 2 23467777666666543 789999999999999843 22223333322247788888 999999999
Q ss_pred EEeeceEEEEee
Q 021744 288 LGSVSFIMFIGQ 299 (308)
Q Consensus 288 ~~s~s~~i~~~~ 299 (308)
+++.+..|-++.
T Consensus 525 a~s~~~~Itiwd 536 (792)
T KOG1963|consen 525 AVSFDDTITIWD 536 (792)
T ss_pred EEecCCEEEEec
Confidence 988865555554
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=3.8e-14 Score=125.21 Aligned_cols=227 Identities=12% Similarity=0.049 Sum_probs=156.2
Q ss_pred eeEEecCCCe--eeccCCCcEEEEECCCCCC-----cccccceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCCc
Q 021744 71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKN-----SNINNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGF 140 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~~ 140 (308)
++.|+|.... |.|.++|+|-+||+..+.. +......|...+..+.+-.+. .+++++.||.|..|+++.-.
T Consensus 247 ~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~ 326 (555)
T KOG1587|consen 247 CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLS 326 (555)
T ss_pred EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccc
Confidence 7899987665 8999999999999965543 112234455556666665433 36889999999999876432
Q ss_pred eeeeEe-----e------CcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCC---CCe-----EEEEEe-CCCeeEEEEc
Q 021744 141 KLLTQL-----E------GHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCA---SGQ-----CAGVIN-LGGEVGCMIS 199 (308)
Q Consensus 141 ~~~~~~-----~------~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~---~~~-----~~~~~~-~~~~v~~~~~ 199 (308)
.+...+ . .-...+++++|.+ +...++.|+.+|.|.--+-. ... ....+. |.+++.++..
T Consensus 327 ~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~ 406 (555)
T KOG1587|consen 327 LPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSR 406 (555)
T ss_pred cchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeec
Confidence 111111 1 1234678999987 45779999999998873332 222 111112 6677777742
Q ss_pred -C--CCEEEEEcCCcEEEEEcC-CCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccc
Q 021744 200 -E--GPWIFIGVTNFVKAWNTQ-TNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKV 271 (308)
Q Consensus 200 -~--~~~l~~~~d~~i~~wd~~-~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (308)
+ .+++++++|-++++|... ...++ .+..+...+++++|||. .|+++..||.|.+||+..... .++.+...
T Consensus 407 nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~--~Pv~s~~~ 484 (555)
T KOG1587|consen 407 NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE--EPVLSQKV 484 (555)
T ss_pred CCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc--CCcccccc
Confidence 2 445556669999999877 44444 67777888999999998 899999999999999987654 66776666
Q ss_pred cCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744 272 HTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 272 ~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
+...... .|++.|+.|+.+. -+.++++.
T Consensus 485 ~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 485 CSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred cccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 6666666 8888899988655 44444443
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=5e-14 Score=110.71 Aligned_cols=225 Identities=14% Similarity=0.096 Sum_probs=154.6
Q ss_pred eeEEecCC--Ce--eeccCCCcEEEEECCCCCCcc---cccce-----eeeeeeeeeeecCC-c-eEEeeCCCeEEEEEc
Q 021744 71 AKRFANNT--WG--RNNNFNNHSNNYRAGNSKNSN---INNRA-----VIKTDILCRNWVQG-N-CMYGEKCKFLHSWTV 136 (308)
Q Consensus 71 ~i~~s~~g--~~--~s~~~d~~i~vwd~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~-~-~~~g~~d~~i~iwd~ 136 (308)
.+.|.|+. .+ ..++.+-.+|+|.+...+... ..+.. +.....+..+..-. + ..+.+-|.+..|||+
T Consensus 101 K~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi 180 (364)
T KOG0290|consen 101 KLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI 180 (364)
T ss_pred ceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEE
Confidence 57888876 44 677777789999996322111 11111 11224444444333 3 367788999999999
Q ss_pred CCCc--eeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe-C---CCeeEEEE---cCCCEEEE
Q 021744 137 GDGF--KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN-L---GGEVGCMI---SEGPWIFI 206 (308)
Q Consensus 137 ~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~-~---~~~v~~~~---~~~~~l~~ 206 (308)
+++. .....+-.|.+.|..++|...+ ..++|++.||+|+++|++..+....+. . ..+...+. .+-+++++
T Consensus 181 e~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymAT 260 (364)
T KOG0290|consen 181 ETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMAT 260 (364)
T ss_pred eeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhh
Confidence 9862 2456778899999999999865 578999999999999999866544443 2 22333333 24556664
Q ss_pred -Ec-CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCc--ccccceeccccCCCeE
Q 021744 207 -GV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN--CFEPAASLKVHTDSNR 277 (308)
Q Consensus 207 -~~-d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~v~ 277 (308)
+. ...|.+.|++.-... ++.+|...|+.++|.|. .++++++|..+.+||+..... ...++..+. .+..|+
T Consensus 261 f~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVN 339 (364)
T KOG0290|consen 261 FAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVN 339 (364)
T ss_pred hhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceee
Confidence 33 568999999976443 89999999999999998 999999999999999986422 123344444 456777
Q ss_pred E-EEec-CCCeEEEeeceEEE
Q 021744 278 A-HFSR-DVTSLLGSVSFIMF 296 (308)
Q Consensus 278 ~-~~s~-d~~~l~~s~s~~i~ 296 (308)
. .|++ ...+++......+-
T Consensus 340 qi~Ws~~~~Dwiai~~~kkle 360 (364)
T KOG0290|consen 340 QIQWSSSQPDWIAICFGKKLE 360 (364)
T ss_pred eeeecccCCCEEEEEecCeee
Confidence 7 9985 45677755444443
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=2.4e-13 Score=110.19 Aligned_cols=218 Identities=11% Similarity=0.079 Sum_probs=152.2
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG 148 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~ 148 (308)
.+.|+.+... ..|+.|| -+++..+.-... .........+..+.|+..=.. +...+-..+++++.+.+ ..+..+.
T Consensus 10 ~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~-~~ICe~~- 85 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-FSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK-TTICEIF- 85 (391)
T ss_pred eeeeccceeEEEccCCCc-eeEEecCchHHh-hcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC-ceEEEEe-
Confidence 3557777777 8888888 588887543221 011111112333444433222 33333356889998877 5565555
Q ss_pred cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC----CCeeEEEEcC--CCEEEE-Ec--CCcEEEEEcCC
Q 021744 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL----GGEVGCMISE--GPWIFI-GV--TNFVKAWNTQT 219 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~----~~~v~~~~~~--~~~l~~-~~--d~~i~~wd~~~ 219 (308)
-..+|.++.++.+ .|+.+-++. |+|||+++-+.+.++.. +..+.+++++ +.+++- ++ .|.|.+||+.+
T Consensus 86 fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence 4678999999854 566655544 99999999999988872 2234555544 457774 22 78999999999
Q ss_pred Ccee-eeeCCCCCEEEEEEeCC--EEEEEcCCCe-EEEEEcCCCCcccccceeccccCC--CeEE-EEecCCCeEEEee-
Q 021744 220 NTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGA-ILAWKFNVTTNCFEPAASLKVHTD--SNRA-HFSRDVTSLLGSV- 291 (308)
Q Consensus 220 ~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~--~v~~-~~s~d~~~l~~s~- 291 (308)
-+.. .+..|++++-+++|+++ +||++++.|+ ||+|.+.++ +.+.++..... .|.+ +|+||+++|.+++
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G----~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG----QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc----cEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 8888 78899999999999999 9999999998 699999998 77777774443 4555 9999999998666
Q ss_pred --ceEEEEee
Q 021744 292 --SFIMFIGQ 299 (308)
Q Consensus 292 --s~~i~~~~ 299 (308)
.++||.+.
T Consensus 239 TeTVHiFKL~ 248 (391)
T KOG2110|consen 239 TETVHIFKLE 248 (391)
T ss_pred CCeEEEEEec
Confidence 56666554
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.64 E-value=1.1e-14 Score=126.05 Aligned_cols=209 Identities=10% Similarity=0.105 Sum_probs=153.1
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG 148 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~ 148 (308)
.++|.|||.. +.+. +..+.+||.+.|..+ ..+++|+..|.+++++.+|.. ++|+.|+.|.+|..+-.. +-.+ .
T Consensus 17 d~afkPDGsqL~lAA-g~rlliyD~ndG~ll-qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY-S 91 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTLL-QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY-S 91 (1081)
T ss_pred eeEECCCCceEEEec-CCEEEEEeCCCcccc-cccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee-c
Confidence 7999999999 5444 456999999877554 477899999999999999966 999999999999875431 2222 4
Q ss_pred cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeE-EEE-cCCCEEEEEc-CCcEEEEEcCCCceeee
Q 021744 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG-CMI-SEGPWIFIGV-TNFVKAWNTQTNTDLSL 225 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~-~~~-~~~~~l~~~~-d~~i~~wd~~~~~~~~~ 225 (308)
|.+.|.||.|+|-...|+||+-. ..-+|..... .+...+....+. |.+ .||++++.|. +|+|.+-+-...+...+
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I 169 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI 169 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE
Confidence 99999999999999999999874 4678876533 222223223333 333 6899999997 99999886554444443
Q ss_pred e---CCCCCEEEEEEeCC-------EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 226 S---GPVGQVYAMAVGND-------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 226 ~---~~~~~v~~~~~~~~-------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
. +..++|++++|+|. +++......++.++.+... .+..-..-.-...| .+.++|.+++.++
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-----~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-----QIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-----eecccccCCCCchhheeccCCcEEEEcc
Confidence 3 46789999999985 8888888999999988763 33322222223344 8889999988555
No 185
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=8.4e-14 Score=122.52 Aligned_cols=252 Identities=11% Similarity=0.007 Sum_probs=152.9
Q ss_pred CceeEEEeecCCCCCCCCCCceEEecC----CCeEEEeecCCCCCCCCCcccccCCCCCCcccccc-c-eeEEecCCCe-
Q 021744 8 GNKRVFHRLGGGGGDGGGGGLSTADTR----QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGA-A-AKRFANNTWG- 80 (308)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~s~s~----d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~-~-~i~~s~~g~~- 80 (308)
....||.++.+..+....--.+++... ...|.+||.+..+. .++..+.. . ..+|+|||+.
T Consensus 147 ~~d~i~~~ltg~~g~f~~riayv~~~~~~~~~~~l~~~d~dg~~~-------------~~lt~~~~~~~~p~wSPDG~~l 213 (429)
T PRK03629 147 ASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-------------FVVHRSPQPLMSPAWSPDGSKL 213 (429)
T ss_pred HHHHHHHHhcCCCCccCCeEEEEEeeCCCCcceeEEEEcCCCCCC-------------EEeecCCCceeeeEEcCCCCEE
Confidence 334556666666555443222222222 23688888775511 11111111 1 6899999998
Q ss_pred eecc---CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EE-eeCCC--eEEEEEcCCCceeeeEeeCcccce
Q 021744 81 RNNN---FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MY-GEKCK--FLHSWTVGDGFKLLTQLEGHQKVV 153 (308)
Q Consensus 81 ~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-g~~d~--~i~iwd~~~~~~~~~~~~~h~~~v 153 (308)
+..+ .+..|.+|++.+++... ............|+|+|.. +. ...++ .|++||+.++ +. ..+..+...+
T Consensus 214 a~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg-~~-~~lt~~~~~~ 289 (429)
T PRK03629 214 AYVTFESGRSALVIQTLANGAVRQ--VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI-RQVTDGRSNN 289 (429)
T ss_pred EEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC-CE-EEccCCCCCc
Confidence 5433 34579999997765321 1112223445789999976 33 33444 5899999887 33 3444455677
Q ss_pred EEEEEeCCCCEEEEeeCC-Cc--EEEEeCCCCeEEEEEeCCCe--eEEEEcCCCEEEEE-c-C--CcEEEEEcCCCceee
Q 021744 154 SGITLPSGSDKLYSGSKD-ET--VRVWDCASGQCAGVINLGGE--VGCMISEGPWIFIG-V-T--NFVKAWNTQTNTDLS 224 (308)
Q Consensus 154 ~~~~~~~~~~~l~s~s~d-g~--v~~wd~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~-~-d--~~i~~wd~~~~~~~~ 224 (308)
....|+||++.|+..+.+ +. |.++|+.+++.......... ...++|++++|+.. . + ..|.+||+.+++...
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 889999999988776654 44 55557776654333222222 23457899988753 3 2 368899999887765
Q ss_pred eeCCCCCEEEEEEeCC--EEEEEcCCCe---EEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744 225 LSGPVGQVYAMAVGND--LLFAGTQDGA---ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR 282 (308)
Q Consensus 225 ~~~~~~~v~~~~~~~~--~l~~g~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~ 282 (308)
+... .......|+|| .|+.++.++. +.++++.. +....+..|...+.. +|+|
T Consensus 370 Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-----~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 370 LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-----RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-----CCeEECccCCCCcCCcccCC
Confidence 5432 23346789999 6776666654 67777754 445666677777777 8887
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=6.3e-14 Score=121.52 Aligned_cols=237 Identities=5% Similarity=-0.048 Sum_probs=175.1
Q ss_pred CCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeee
Q 021744 35 QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTD 111 (308)
Q Consensus 35 d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 111 (308)
+..+.++|.+.+ ....++.||... +++++.+|+. |+|+.|+.|.+|.-. ..+.....|...+
T Consensus 32 g~rlliyD~ndG------------~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~I 96 (1081)
T KOG1538|consen 32 GSRLLVYDTSDG------------TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAI 96 (1081)
T ss_pred CCEEEEEeCCCc------------ccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCee
Confidence 457899999988 456778999988 9999999999 999999999999763 2233456788889
Q ss_pred eeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--
Q 021744 112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-- 189 (308)
Q Consensus 112 ~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-- 189 (308)
.++.|.|-...+..+.=...-+|...... +...+ ....+.+++|..||++++.|-.+|+|.+-+-. ++....+.
T Consensus 97 QCMsFNP~~h~LasCsLsdFglWS~~qK~--V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rp 172 (1081)
T KOG1538|consen 97 QCMSFNPITHQLASCSLSDFGLWSPEQKS--VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERP 172 (1081)
T ss_pred eEeecCchHHHhhhcchhhccccChhhhh--HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCC
Confidence 99999998866444444556788876652 22222 34678899999999999999999999998744 55554554
Q ss_pred --CCCeeEEEE--cC-----CCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcC
Q 021744 190 --LGGEVGCMI--SE-----GPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (308)
Q Consensus 190 --~~~~v~~~~--~~-----~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~ 257 (308)
..+++.++. |. ...+++.. ..++.+|.+.....-.-..-.-...|+.+.++ +++.|+.|+.+++|--.
T Consensus 173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence 345666552 22 23566555 77888888765433333333445678888888 99999999999999755
Q ss_pred CCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEE
Q 021744 258 VTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIM 295 (308)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i 295 (308)
. -.+.++-....+|+. +..|++++++.+| +.+|
T Consensus 253 G-----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 253 G-----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred C-----eEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence 4 456666667889999 9999999998766 4444
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=9.2e-13 Score=112.47 Aligned_cols=237 Identities=10% Similarity=0.086 Sum_probs=141.4
Q ss_pred CCce-EEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eecc-CCCcEEEEECCCCCCccc
Q 021744 26 GGLS-TADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNN-FNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~-~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~-~d~~i~vwd~~~~~~~~~ 102 (308)
+..| +++..++.|.+|+.....+. ... ...+ ..++ ...++++|+++. ++++ .++.|.+|++++......
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l--~~~-~~~~----~~~~-p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGAL--TFA-AESP----LPGS-PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA 117 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCce--EEe-eeec----CCCC-ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence 4444 44556889999998632110 000 0011 1111 115999999998 5444 589999999964321111
Q ss_pred ccc--eeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceee------eEeeCcccceEEEEEeCCCCEEEEeeC-C
Q 021744 103 NNR--AVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLL------TQLEGHQKVVSGITLPSGSDKLYSGSK-D 171 (308)
Q Consensus 103 ~~~--~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~s~s~-d 171 (308)
... ........+.++|++.. ++...++.|.+||+.+..... ..... ......++|+|++++++++.. +
T Consensus 118 ~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 118 PIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred ceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCC
Confidence 111 11123566778999866 455577999999997641221 11111 234578999999999987776 8
Q ss_pred CcEEEEeCCC--C--eEEEEEe-CCC------ee--EEEEcCCCEEEEEc--CCcEEEEEcCCCc-eeeeeCC---CCCE
Q 021744 172 ETVRVWDCAS--G--QCAGVIN-LGG------EV--GCMISEGPWIFIGV--TNFVKAWNTQTNT-DLSLSGP---VGQV 232 (308)
Q Consensus 172 g~v~~wd~~~--~--~~~~~~~-~~~------~v--~~~~~~~~~l~~~~--d~~i~~wd~~~~~-~~~~~~~---~~~v 232 (308)
++|.+|++.. + +.+..+. .+. .. ..+.|++++++++. ++.|.+|++.... ...+.++ ....
T Consensus 197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p 276 (330)
T PRK11028 197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP 276 (330)
T ss_pred CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence 9999999973 3 2333332 111 11 22458899998874 6799999986543 2222222 1245
Q ss_pred EEEEEeCC--EEEEEc-CCCeEEEEEcCCCCcccccceeccc
Q 021744 233 YAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKV 271 (308)
Q Consensus 233 ~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (308)
..+.++|+ +|+++. .+++|.+|++......+..+..+..
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~ 318 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV 318 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc
Confidence 67899999 665554 4899999998643322234444443
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.60 E-value=2.4e-12 Score=112.34 Aligned_cols=222 Identities=21% Similarity=0.307 Sum_probs=165.4
Q ss_pred ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC-Ccccccce-eeeeeeeeee-ecCCc-e-EE-eeCCCeEEEE
Q 021744 64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK-NSNINNRA-VIKTDILCRN-WVQGN-C-MY-GEKCKFLHSW 134 (308)
Q Consensus 64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~-~-~~-g~~d~~i~iw 134 (308)
..+|... .+.+.+.+.. +.++.|+.+.+|+..... ... .... +...+..... .+++. . +. +..|+.+++|
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK-SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE-EEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 3455555 7888999988 888899999999997664 221 2222 1113333333 55555 3 33 3448999999
Q ss_pred EcCC-CceeeeEeeCcccceEEEEEeCCCCEEEEeeC-CCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCC-EEEE-E
Q 021744 135 TVGD-GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGP-WIFI-G 207 (308)
Q Consensus 135 d~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~-~l~~-~ 207 (308)
+... . .....+..|...|..++|+|++..+++++. |+.+++|++..+..+..+. +...+.++ .+++. .+++ +
T Consensus 140 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPG-KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCC-eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9998 5 678888999999999999999998888886 9999999999988888777 56677766 35666 4444 3
Q ss_pred cCCcEEEEEcCCCceee--eeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744 208 VTNFVKAWNTQTNTDLS--LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR 282 (308)
Q Consensus 208 ~d~~i~~wd~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~ 282 (308)
.|+.|++||...+.... +..|.... ...|+|+ .+++++.|+.+++|++.... ..+..+..|...+.. .|.|
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS---SLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC---cEEEEEecCCccEEEEEECC
Confidence 49999999998776663 77777765 4478888 78899999999999999763 223333677889998 9999
Q ss_pred CCCeEEEee
Q 021744 283 DVTSLLGSV 291 (308)
Q Consensus 283 d~~~l~~s~ 291 (308)
++..++++.
T Consensus 295 ~~~~~~~~~ 303 (466)
T COG2319 295 DGKLLASGS 303 (466)
T ss_pred CCCEEEEee
Confidence 888877633
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=1.2e-13 Score=107.25 Aligned_cols=230 Identities=13% Similarity=0.055 Sum_probs=155.1
Q ss_pred cccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCc--
Q 021744 65 TANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF-- 140 (308)
Q Consensus 65 ~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~-- 140 (308)
++|... ++.|-.++...+|..-|.|++|++.+..........+...+..+..-|.+.+.+-+.|..+.+|++.-..
T Consensus 11 Rp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i 90 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFI 90 (323)
T ss_pred ccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceE
Confidence 355555 6777777766999999999999997776554333345555666777777777888889999999876421
Q ss_pred ---------------------eee-eEe----------------------------eCcccceEEEEEeC-CCC--EEEE
Q 021744 141 ---------------------KLL-TQL----------------------------EGHQKVVSGITLPS-GSD--KLYS 167 (308)
Q Consensus 141 ---------------------~~~-~~~----------------------------~~h~~~v~~~~~~~-~~~--~l~s 167 (308)
+.. +.+ .+..+.+.+..+.. ++. +++.
T Consensus 91 ~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla 170 (323)
T KOG0322|consen 91 SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA 170 (323)
T ss_pred EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEE
Confidence 000 000 01124566666543 233 3678
Q ss_pred eeCCCcEEEEeCCCCeEEEEEe-----------CCCeeEEEEcC--CCEEEEEc-CCcEEEEEcCC--Ccee---eeeCC
Q 021744 168 GSKDETVRVWDCASGQCAGVIN-----------LGGEVGCMISE--GPWIFIGV-TNFVKAWNTQT--NTDL---SLSGP 228 (308)
Q Consensus 168 ~s~dg~v~~wd~~~~~~~~~~~-----------~~~~v~~~~~~--~~~l~~~~-d~~i~~wd~~~--~~~~---~~~~~ 228 (308)
|-++|.|.+||+.++..+-.++ +..++.++..+ -..=++|+ +..+..|.+.. +.+. .+.-.
T Consensus 171 GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 171 GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 8899999999999974444333 44455544222 11112233 55777787754 3332 23333
Q ss_pred CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE-eeceEEEEe
Q 021744 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG-SVSFIMFIG 298 (308)
Q Consensus 229 ~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~-s~s~~i~~~ 298 (308)
...|..+.+-|| ++|+++.|++|++|+.++. +++..++-|...|++ +|+||..++++ |.+..|-+|
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl----~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL----NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLW 320 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccC----CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEee
Confidence 446788889999 9999999999999999997 889999999999999 99999777774 446555554
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.59 E-value=1.7e-13 Score=112.26 Aligned_cols=149 Identities=16% Similarity=0.244 Sum_probs=116.1
Q ss_pred eeEEecCCC-e-eeccCCCcEEEEECCCCCCccc--------ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC--
Q 021744 71 AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSNI--------NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG-- 137 (308)
Q Consensus 71 ~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~-- 137 (308)
.+.|.++.. . |||+.|..||+|.++..++... .+..|...+..+.|+|+|.. ++|+.+|.|.+|-..
T Consensus 18 s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 18 SVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred EEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 677877766 5 9999999999999976654431 34567788999999999977 899999999999876
Q ss_pred ------C-----C--ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEE--cCC
Q 021744 138 ------D-----G--FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMI--SEG 201 (308)
Q Consensus 138 ------~-----~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~--~~~ 201 (308)
+ . ....+.+.+|...|..++|+|++.++++++.|.++++||+..|+.+..+. |..-+..+. |-+
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN 177 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh
Confidence 2 1 13456678899999999999999999999999999999999999988877 555555442 446
Q ss_pred CEEEE-EcCCcEEEEEcCC
Q 021744 202 PWIFI-GVTNFVKAWNTQT 219 (308)
Q Consensus 202 ~~l~~-~~d~~i~~wd~~~ 219 (308)
+++++ +.|...+.+++..
T Consensus 178 qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred hhhhhhccCcccceeeeee
Confidence 66664 3355555555443
No 191
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.5e-13 Score=121.45 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=128.7
Q ss_pred eeEEecCCCe-eeccCC---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCC--eEEEEEcCCCcee
Q 021744 71 AKRFANNTWG-RNNNFN---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCK--FLHSWTVGDGFKL 142 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~--~i~iwd~~~~~~~ 142 (308)
..+|+|||+. +..+.+ ..|.+||+.+++.. .............|+|+|.. ++.+.++ .|++||+.++ +
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g-~- 283 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR-Q- 283 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC-C-
Confidence 6799999998 655533 46999999776542 11222223446789999965 3344444 6999999887 3
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeC-CCc--EEEEeCCCCeEEEEEeCCCe--eEEEEcCCCEEEEEc--CC--cEE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DET--VRVWDCASGQCAGVINLGGE--VGCMISEGPWIFIGV--TN--FVK 213 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~--v~~wd~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~--d~--~i~ 213 (308)
...+..+.......+|+||++.|+..+. ++. |.++|+.+++.......... ...+++++++++... ++ .|.
T Consensus 284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~ 363 (433)
T PRK04922 284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIA 363 (433)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEE
Confidence 3455556556678899999998877664 444 66777777654332222222 235578999888543 32 699
Q ss_pred EEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcC---CCeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744 214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ---DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR 282 (308)
Q Consensus 214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~ 282 (308)
+||+.+++...+.. ........|+|| .++..+. .+.|.++++.. .....+..+...+.. +|+|
T Consensus 364 v~d~~~g~~~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-----~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 364 VMDLSTGSVRTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-----RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEECCCCCeEECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-----CceEEcccCCCCCCCCccCC
Confidence 99999887765442 224456789999 4444443 23577777754 334445444555666 7765
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=1.4e-13 Score=116.54 Aligned_cols=206 Identities=13% Similarity=0.102 Sum_probs=153.2
Q ss_pred CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~ 99 (308)
+.+...++-++.||.+-+-+-... .-.....|.++ +-+|+|||.- ++++.||.|++|... | .
T Consensus 72 g~~~d~~~i~s~DGkf~il~k~~r-------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G-M 136 (737)
T KOG1524|consen 72 GKGSDTLLICSNDGRFVILNKSAR-------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G-M 136 (737)
T ss_pred CCCcceEEEEcCCceEEEecccch-------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c-h
Confidence 445678888999999888764432 11223567777 7899999998 999999999999863 2 1
Q ss_pred cccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 100 SNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
+..........+.++++-|+.+.+.=+..+.+.|=.+.-. ..+-..+.|.+-|.++.|++....+++|++|-..++||.
T Consensus 137 LRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 137 LRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred HHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence 2223344455689999999887655556677777666655 445578899999999999999999999999999999996
Q ss_pred CCCeEEEEEe-CCCeeEEE-EcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744 180 ASGQCAGVIN-LGGEVGCM-ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (308)
Q Consensus 180 ~~~~~~~~~~-~~~~v~~~-~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd 255 (308)
. |+.+..-. ++.+++++ +.+.+.+++++-+++++= ....+.|..++||+| .++.|+..|.+.+-.
T Consensus 216 ~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 216 Q-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred c-CcccccCChhccceeeeeeccccceeeeeeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 6 55555544 88889988 444477777777766622 123568999999999 788888888776543
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.2e-12 Score=100.65 Aligned_cols=222 Identities=10% Similarity=0.089 Sum_probs=145.8
Q ss_pred CceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCC-cccccc-ceeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPA-ATANGA-AAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~-~~gh~~-~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
.++.+++ ||.|+-|......+ ..|.-+.+.++.... ...-.. +++...|..+. +.++.|+.+.-||+++++.. .
T Consensus 73 ~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~-r 150 (325)
T KOG0649|consen 73 DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ-R 150 (325)
T ss_pred hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE-E
Confidence 4455555 59999998765433 233333322211111 000011 17888888777 88889999999999998643 4
Q ss_pred ccceeeeeeeeeee-ecCCceEEeeCCCeEEEEEcCCCceeeeEeeC---------c-ccceEEEEEeCCCCEEEEeeCC
Q 021744 103 NNRAVIKTDILCRN-WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG---------H-QKVVSGITLPSGSDKLYSGSKD 171 (308)
Q Consensus 103 ~~~~~~~~~~~~~~-~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~---------h-~~~v~~~~~~~~~~~l~s~s~d 171 (308)
..++|...+.++.- ...+..++|++||++|+||.++. +.+..+.. | ...|-+++.+ ...++.|+ .
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-G 226 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-G 226 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-C
Confidence 66788888887776 56668899999999999999998 55555532 1 1345566655 44666654 4
Q ss_pred CcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEE-EcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEcC
Q 021744 172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ 247 (308)
Q Consensus 172 g~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~ 247 (308)
..+.+|++++.++...+..+.++..+......+++ |..+.+.-|.+..--...........++..++.. ++-.++.
T Consensus 227 p~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~ 306 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGF 306 (325)
T ss_pred CceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEeccc
Confidence 67999999999999999988888877555555554 4467888887754322233333334555555443 5555666
Q ss_pred CCeEEEE
Q 021744 248 DGAILAW 254 (308)
Q Consensus 248 dg~i~iw 254 (308)
..++.|+
T Consensus 307 s~~~~i~ 313 (325)
T KOG0649|consen 307 SNKLHIL 313 (325)
T ss_pred ceeeeee
Confidence 6666665
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=6.3e-14 Score=118.57 Aligned_cols=163 Identities=12% Similarity=0.168 Sum_probs=130.9
Q ss_pred ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE-E
Q 021744 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-I 198 (308)
Q Consensus 121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~-~ 198 (308)
.++..+.||.+.+.+-. + +..+....|.+.+.+-.|+|||.-|+++++||.|++|. ++|....++. .+.++.|+ +
T Consensus 77 ~~~i~s~DGkf~il~k~-~-rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS-A-RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred eEEEEcCCceEEEeccc-c-hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 34778889999887643 3 45667788999999999999999999999999999998 5565555544 66778877 3
Q ss_pred -cCCCEEEEEcCCcEEEEEcCCCce-eeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC
Q 021744 199 -SEGPWIFIGVTNFVKAWNTQTNTD-LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274 (308)
Q Consensus 199 -~~~~~l~~~~d~~i~~wd~~~~~~-~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 274 (308)
|+.+-++-+..+.+.+=.+..... +..++|.+-|.++.|++. ++++|++|-+.++||... +.+.....|..
T Consensus 154 ~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~ey 228 (737)
T KOG1524|consen 154 APNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-----ANLFTSAAEEY 228 (737)
T ss_pred CCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-----cccccCChhcc
Confidence 666666666667777777765544 488999999999999987 999999999999999876 66777778888
Q ss_pred CeEE-EEecCCCeEEEee
Q 021744 275 SNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 275 ~v~~-~~s~d~~~l~~s~ 291 (308)
+|++ +|.||..+++.|.
T Consensus 229 ~ITSva~npd~~~~v~S~ 246 (737)
T KOG1524|consen 229 AITSVAFNPEKDYLLWSY 246 (737)
T ss_pred ceeeeeeccccceeeeee
Confidence 9988 9999977777665
No 195
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=5.6e-12 Score=100.49 Aligned_cols=219 Identities=11% Similarity=0.102 Sum_probs=146.9
Q ss_pred eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeee-ecCCce-EEeeCC------CeEEEEEcCCCcee
Q 021744 71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRN-WVQGNC-MYGEKC------KFLHSWTVGDGFKL 142 (308)
Q Consensus 71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~~d------~~i~iwd~~~~~~~ 142 (308)
.++|+.|...++.+.|.-.|||+.+.-+..... ..+......+.. +-.+.+ +.|+.+ +.+.|||=... ..
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r-~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~-~~ 87 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASR-QFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE-RC 87 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhhh-ccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC-cE
Confidence 478888888844444544899999753221111 111111111111 111222 344433 68999994444 56
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC-CCeEEEEEe---CCCeeEEEEcC--CCEEEE-Ec-CCcEEE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQCAGVIN---LGGEVGCMISE--GPWIFI-GV-TNFVKA 214 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~-~~~~~~~~~---~~~~v~~~~~~--~~~l~~-~~-d~~i~~ 214 (308)
+.++. -..+|.++.+.++ .++..- .+.|++|... +-+.+..+. .+.-..++.+. ..+|+. |. -|.|++
T Consensus 88 i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi 163 (346)
T KOG2111|consen 88 IIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQI 163 (346)
T ss_pred EEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEE
Confidence 66665 5689999999876 455544 4789999988 456666665 23334555543 334443 33 789999
Q ss_pred EEcCCCce---eeeeCCCCCEEEEEEeCC--EEEEEcCCCe-EEEEEcCCCCcccccceeccc--cCCCeEE-EEecCCC
Q 021744 215 WNTQTNTD---LSLSGPVGQVYAMAVGND--LLFAGTQDGA-ILAWKFNVTTNCFEPAASLKV--HTDSNRA-HFSRDVT 285 (308)
Q Consensus 215 wd~~~~~~---~~~~~~~~~v~~~~~~~~--~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~--~~~~v~~-~~s~d~~ 285 (308)
-|+...+. ..+.+|.+.|.|++.+.+ .+|++|..|+ |||||..++ .++.++.. ....+.+ +|||+..
T Consensus 164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g----~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 164 VDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG----TLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC----cEeeeeecCCchheEEEEEeCCCcc
Confidence 99987766 588999999999999988 9999999998 799999998 77777763 3446778 9999999
Q ss_pred eEEEee---ceEEEEee
Q 021744 286 SLLGSV---SFIMFIGQ 299 (308)
Q Consensus 286 ~l~~s~---s~~i~~~~ 299 (308)
+|++++ .+.||-..
T Consensus 240 ~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLR 256 (346)
T ss_pred EEEEEcCCCeEEEEEee
Confidence 999877 56666554
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.1e-12 Score=119.18 Aligned_cols=226 Identities=12% Similarity=0.101 Sum_probs=153.7
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccce--eeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCC----c
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRA--VIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG----F 140 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~----~ 140 (308)
.+.|+|=... +++...-.|+|||.+.++.+.....+ ....|..+.+-..- ..++++.||.|+||+-... .
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP 1148 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc
Confidence 5788888888 77776678999999877654332211 12235555554433 2389999999999985422 1
Q ss_pred eeeeEee---C----cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEEEc---CCCEEEEEc
Q 021744 141 KLLTQLE---G----HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCMIS---EGPWIFIGV 208 (308)
Q Consensus 141 ~~~~~~~---~----h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~~~---~~~~l~~~~ 208 (308)
+.+..+. + -.+.=.-++|.....+|++++.-..|+|||....+.+..+. ....++++++ .+..+++|.
T Consensus 1149 eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee
Confidence 2222221 1 12222456787776777777778999999999988888877 3445666653 478899987
Q ss_pred -CCcEEEEEcCCCce---e-eeeCCCCC--EEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceecccc---CCC
Q 021744 209 -TNFVKAWNTQTNTD---L-SLSGPVGQ--VYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH---TDS 275 (308)
Q Consensus 209 -d~~i~~wd~~~~~~---~-~~~~~~~~--v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~ 275 (308)
||.|++||.+.... + ....|... |..+.+.+. .|++|+.||.|++||++.... +...++..| .+.
T Consensus 1229 aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~--e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1229 ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK--ETFLTIVAHWEYGSA 1306 (1387)
T ss_pred cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc--cccceeeeccccCcc
Confidence 99999999987654 2 56678776 999999886 699999999999999998421 222223332 234
Q ss_pred eEE-EEecCCCeEEEee--ceEEEEe
Q 021744 276 NRA-HFSRDVTSLLGSV--SFIMFIG 298 (308)
Q Consensus 276 v~~-~~s~d~~~l~~s~--s~~i~~~ 298 (308)
.++ ..+++...+++++ .+.||..
T Consensus 1307 lTal~VH~hapiiAsGs~q~ikIy~~ 1332 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSAQLIKIYSL 1332 (1387)
T ss_pred ceeeeeccCCCeeeecCcceEEEEec
Confidence 777 8888888887554 3444443
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=120.92 Aligned_cols=216 Identities=14% Similarity=0.125 Sum_probs=166.6
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH 149 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h 149 (308)
.+.++.+|.+ +.|+.-|.|..+|..+.+.. ........+..+.|.....++.......++|||-... -++.++.|
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~--~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt--ElHClk~~ 209 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH--FEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGT--ELHCLKRH 209 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceee--eeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCc--EEeehhhc
Confidence 5889999999 99999999999999877554 2222333477788888887777778899999996543 36666644
Q ss_pred ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC-CCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee-e
Q 021744 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-S 224 (308)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~ 224 (308)
..|..+.|-|-.-+|++++..|.++.-|+.+|+.+..+.. .+.+..+. |-+..+-.|. .|+|.+|.....+++ .
T Consensus 210 -~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 210 -IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred -CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 6789999999888899999999999999999999998883 34444553 3345555776 899999999998887 8
Q ss_pred eeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEE
Q 021744 225 LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFI 297 (308)
Q Consensus 225 ~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~ 297 (308)
+..|.++|.++++.++ +++|.+.|+.++|||++.. ..+.++.. ..+... +||.-| +|+.+. -+.||.
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~----~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF----YQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWK 360 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeeccc----cccceeec-CCCcccccccccc-ceeeecCCeeeeeh
Confidence 8899999999999999 9999999999999999986 44444443 334444 787666 444444 344443
No 198
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=6.2e-13 Score=113.49 Aligned_cols=215 Identities=12% Similarity=0.146 Sum_probs=153.5
Q ss_pred eeEEecCCCe--eeccCCCcEEEEECCCCCCc----------cc-----------------ccceeee-------ee---
Q 021744 71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS----------NI-----------------NNRAVIK-------TD--- 111 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~----------~~-----------------~~~~~~~-------~~--- 111 (308)
.|.++|||.| |+|.+--.|++||+..-..- .. ...-|.. .+
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~ 135 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKF 135 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcC
Confidence 7999999999 99999999999999643210 00 0000000 00
Q ss_pred -eeeeee-cCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744 112 -ILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (308)
Q Consensus 112 -~~~~~~-~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~ 189 (308)
..+.++ +...+..++....|+-++++.+ ..+..|....+.++++..++...+|++|+.+|.|.+||.++...+..+.
T Consensus 136 GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred CccccccCCCccEEEeecCcceEEEEcccc-ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence 011111 1112355666778888899999 7888888778999999999999999999999999999999988887776
Q ss_pred CCCe------------eEEE-EcC-CCEEEEEc-CCcEEEEEcCCCceeeeeCCC--CCEEEEEEeCC---EEEEEcCCC
Q 021744 190 LGGE------------VGCM-ISE-GPWIFIGV-TNFVKAWNTQTNTDLSLSGPV--GQVYAMAVGND---LLFAGTQDG 249 (308)
Q Consensus 190 ~~~~------------v~~~-~~~-~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~--~~v~~~~~~~~---~l~~g~~dg 249 (308)
.... ++++ +.+ |-.+++|. +|.+.+||+++.+++....|. -+|..+.|.+. --+...+..
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~ 294 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR 294 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchH
Confidence 3222 5555 344 77788887 999999999999988666665 47888988665 333345567
Q ss_pred eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
.++|||-.++ ++...++. ...++. ++-|++.+++.+-
T Consensus 295 ~~kiWd~~~G----k~~asiEp-t~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 295 ILKIWDECTG----KPMASIEP-TSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred HhhhcccccC----Cceeeccc-cCCcCceeeecCCceEEEec
Confidence 8999999987 55565654 344777 8888877766554
No 199
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.1e-13 Score=117.76 Aligned_cols=226 Identities=14% Similarity=0.127 Sum_probs=156.1
Q ss_pred eeEEecCCCe---eeccCCCcEEEE--ECCCCC-------------------CcccccceeeeeeeeeeeecCCc-eEEe
Q 021744 71 AKRFANNTWG---RNNNFNNHSNNY--RAGNSK-------------------NSNINNRAVIKTDILCRNWVQGN-CMYG 125 (308)
Q Consensus 71 ~i~~s~~g~~---~s~~~d~~i~vw--d~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~g 125 (308)
.+++.|.+.. ++...|...++| +++... .+......|...++...|.+... ++++
T Consensus 233 ~i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~ 312 (577)
T KOG0642|consen 233 EITNPPEGTKSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITA 312 (577)
T ss_pred cccCCcccCCCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEe
Confidence 5667666655 455555667888 442110 01112233444466667766654 4899
Q ss_pred eCCCeEEEEEcCCC-------ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe----------EEEEE
Q 021744 126 EKCKFLHSWTVGDG-------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ----------CAGVI 188 (308)
Q Consensus 126 ~~d~~i~iwd~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~----------~~~~~ 188 (308)
+.|++|++|+++.. .+++.+|++|.++|.|+++.+++.++++|+-||+|+.|++...+ ....+
T Consensus 313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l 392 (577)
T KOG0642|consen 313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTL 392 (577)
T ss_pred ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccce
Confidence 99999999999321 26788999999999999999999999999999999999665321 11122
Q ss_pred e-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-----------------------------------------
Q 021744 189 N-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL----------------------------------------- 223 (308)
Q Consensus 189 ~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~----------------------------------------- 223 (308)
. |...+..+ ++....|++++ ||++++|+.....+.
T Consensus 393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~ 472 (577)
T KOG0642|consen 393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV 472 (577)
T ss_pred eccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh
Confidence 2 55566544 34445566554 999999986543210
Q ss_pred ----eee-------CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744 224 ----SLS-------GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG 289 (308)
Q Consensus 224 ----~~~-------~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~ 289 (308)
.+. .....+.-+..+|. +.+++..|+.|+++|..++ .++.....|...+++ ++.|+|-+|+.
T Consensus 473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~----~~l~s~~a~~~svtslai~~ng~~l~s 548 (577)
T KOG0642|consen 473 SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG----KILHSMVAHKDSVTSLAIDPNGPYLMS 548 (577)
T ss_pred hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc----ccchheeeccceecceeecCCCceEEe
Confidence 000 00124555666676 8999999999999999997 888999999999999 99999999995
Q ss_pred ee-ceEEEEeec
Q 021744 290 SV-SFIMFIGQN 300 (308)
Q Consensus 290 s~-s~~i~~~~~ 300 (308)
+. +..+.++..
T Consensus 549 ~s~d~sv~l~kl 560 (577)
T KOG0642|consen 549 GSHDGSVRLWKL 560 (577)
T ss_pred ecCCceeehhhc
Confidence 54 666655554
No 200
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.52 E-value=3.4e-13 Score=106.12 Aligned_cols=178 Identities=15% Similarity=0.185 Sum_probs=126.0
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCC--CCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCC
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELP--LPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~--~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~ 99 (308)
.++|.++|-|.|+.|||..++ .+ ....+..|... .|+|...+.. |+.+.||+||++|+...+-
T Consensus 163 p~~igtSSiDTTCTiWdie~~-----------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETG-----------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred cceeEeecccCeEEEEEEeec-----------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 468999999999999999887 22 23445677777 8999987665 9999999999999965432
Q ss_pred ccccccee--eeeeeeeeeecCC-ce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCc
Q 021744 100 SNINNRAV--IKTDILCRNWVQG-NC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDET 173 (308)
Q Consensus 100 ~~~~~~~~--~~~~~~~~~~~~~-~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~ 173 (308)
........ ......+.+++.. ++ ..+-....|.|.|++....++..+++|++.|..++|.|. ...+.|++.|..
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 21111111 2224445555555 22 234556789999999776789999999999999999985 478999999999
Q ss_pred EEEEeCCCCe------EEEEEeCCCeeEEE-E--cCCCEEEEEcCCcEEE
Q 021744 174 VRVWDCASGQ------CAGVINLGGEVGCM-I--SEGPWIFIGVTNFVKA 214 (308)
Q Consensus 174 v~~wd~~~~~------~~~~~~~~~~v~~~-~--~~~~~l~~~~d~~i~~ 214 (308)
+.+||+..-- ++..+..++++..+ + ....+++.+.++.+.+
T Consensus 312 aliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 312 ALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred EEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeE
Confidence 9999998532 23333355666655 2 3466777776665544
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.52 E-value=2.2e-12 Score=118.89 Aligned_cols=244 Identities=13% Similarity=0.085 Sum_probs=154.6
Q ss_pred ceeEEEeecCCCCC------CCCCCceEEecCCCeEEEeecCCCCCC----CCCcccccCCCCCCccccccceeEEecCC
Q 021744 9 NKRVFHRLGGGGGD------GGGGGLSTADTRQKVCNYWRAGKCNRF----PCPYLHRELPLPPAATANGAAAKRFANNT 78 (308)
Q Consensus 9 ~~~~~~~~~~~~~~------~~~~~~~~s~s~d~~i~~W~~~~~~~~----~~~~~~~~~~~~~~~~gh~~~~i~~s~~g 78 (308)
|++|.|.-.+.+.. +.-+++++|||.||+||+|+..+-.+. .++.-. ...+....++...+.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-------s~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-------SPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-------eccCCceEEEEeccCC
Confidence 35666655444322 223589999999999999997654221 111000 0011111267778888
Q ss_pred Ce-eeccCCCcEEEEECCCCCCcc-------cccceeeeeeeee-eeecCC-c--eEEeeCCCeEEEEEcCCCceeeeEe
Q 021744 79 WG-RNNNFNNHSNNYRAGNSKNSN-------INNRAVIKTDILC-RNWVQG-N--CMYGEKCKFLHSWTVGDGFKLLTQL 146 (308)
Q Consensus 79 ~~-~s~~~d~~i~vwd~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~-~--~~~g~~d~~i~iwd~~~~~~~~~~~ 146 (308)
.. |.++.||.|++.+++..+... .......+.+..+ +|.... . .+++...+.|..||++.. .....+
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-~~~w~l 1189 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-HDAWRL 1189 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-hhHHhh
Confidence 88 999999999999996521110 0111111112222 332222 2 377888899999999876 333333
Q ss_pred e--CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC--eeEEE--E---cCCCEEEE-Ec--CCcEEE
Q 021744 147 E--GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--EVGCM--I---SEGPWIFI-GV--TNFVKA 214 (308)
Q Consensus 147 ~--~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~--~v~~~--~---~~~~~l~~-~~--d~~i~~ 214 (308)
+ ...+.|++++.+|.+.++++|+..|.+.+||++-+.++..+.++. ++..+ + +.....++ +. .+.|.+
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 2 245789999999999999999999999999999999998888543 34333 2 22345554 33 568999
Q ss_pred EEcCCCcee-eeeCC-----------------C---CCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCC
Q 021744 215 WNTQTNTDL-SLSGP-----------------V---GQVYAMAVGND-LLFAGTQDGAILAWKFNVTT 260 (308)
Q Consensus 215 wd~~~~~~~-~~~~~-----------------~---~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~ 260 (308)
|++.++... .+-.. . ..+.+..-.++ .+++|+.|..|+.||.....
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 999988654 22111 0 11223323344 89999999999999987653
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=1.5e-12 Score=103.72 Aligned_cols=191 Identities=13% Similarity=0.128 Sum_probs=143.7
Q ss_pred eeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC-CCeE
Q 021744 109 KTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQC 184 (308)
Q Consensus 109 ~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~-~~~~ 184 (308)
..+.+.+|..+... +.+.....|.||...... +..+++..|...|+.++|+|..+.|++|+.|..-++|... .++-
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 34788889998866 677788899999987552 6788999999999999999999999999999999999984 3332
Q ss_pred ---EEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-----eeeCCCCCEEEEEEeCC--EEEEEcCCCeE
Q 021744 185 ---AGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND--LLFAGTQDGAI 251 (308)
Q Consensus 185 ---~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-----~~~~~~~~v~~~~~~~~--~l~~g~~dg~i 251 (308)
+..+.+....+++ +|.++.+++|+ ...|.+|-.+...-- .-+.+.+.|++++|+|+ ++++|+.|+.+
T Consensus 91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~ 170 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKC 170 (361)
T ss_pred ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcce
Confidence 2233366777777 57788888887 667888877655432 33456788999999999 99999999999
Q ss_pred EEEEcCCCC--------------cccccceeccccCCCeEE-EEecCCCeEE-EeeceEEEEee
Q 021744 252 LAWKFNVTT--------------NCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSVSFIMFIGQ 299 (308)
Q Consensus 252 ~iwd~~~~~--------------~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~s~~i~~~~ 299 (308)
++|...-+. +..+++.++....+.+.. .|+|+|..|+ ++.+..+.+..
T Consensus 171 rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 171 RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred eEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 999743211 112333444456678888 9999999888 55565555544
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=4.3e-13 Score=112.29 Aligned_cols=265 Identities=9% Similarity=0.021 Sum_probs=187.1
Q ss_pred CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC---eeeccCCCcEEEEECC-C
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW---GRNNNFNNHSNNYRAG-N 96 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~---~~s~~~d~~i~vwd~~-~ 96 (308)
...|..++|+|.|..|.+||.... .+......||... .-.|-|... .++.+.||.||+=.+. +
T Consensus 151 N~~Gd~l~SgSDD~~vv~WdW~~~-----------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 151 NQRGDVLASGSDDLQVVVWDWVSG-----------SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred cccCceeeccCccceEEeehhhcc-----------CcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 344789999999999999999988 6666777788777 334655432 2999999999998873 3
Q ss_pred CCCc-ccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc--eeeeEeeCccc---ceEEEEEeCCCC-EEEE
Q 021744 97 SKNS-NINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF--KLLTQLEGHQK---VVSGITLPSGSD-KLYS 167 (308)
Q Consensus 97 ~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~---~v~~~~~~~~~~-~l~s 167 (308)
+... ...+..|...+..++.-|+..+ .+++.|+.+.-+|+++.. ..+..-+.+.. ....++.+|... ++++
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 3222 2234567777888888777744 889999999999998762 11222223333 467888888664 7899
Q ss_pred eeCCCcEEEEeCCCCeE------EEEEe-------CCCeeEEE-E-cCCCEEEEE-cCCcEEEEEcCCCc----------
Q 021744 168 GSKDETVRVWDCASGQC------AGVIN-------LGGEVGCM-I-SEGPWIFIG-VTNFVKAWNTQTNT---------- 221 (308)
Q Consensus 168 ~s~dg~v~~wd~~~~~~------~~~~~-------~~~~v~~~-~-~~~~~l~~~-~d~~i~~wd~~~~~---------- 221 (308)
++.|-.+++||.+.-.. +.++. ..-.|+++ . .++.-|.++ .|-.|+++....+.
T Consensus 300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~ 379 (559)
T KOG1334|consen 300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR 379 (559)
T ss_pred CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch
Confidence 99999999999875321 22222 12235555 2 355544444 48899999543221
Q ss_pred --ee--eeeCCCC--CEEEEEEeC-C--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 222 --DL--SLSGPVG--QVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 222 --~~--~~~~~~~--~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
.. .+++|.. .|..+-|-. . ++++|++=|.|.||+-.++ +.++.+++....|+| .=+|.-.+|++|+
T Consensus 380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~----eii~~MegDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG----EIIRFMEGDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh----HHHHHhhcccceEeccCCCCCCchhhccC
Confidence 11 3677764 577787754 4 9999999999999999987 888888877778888 7788888888887
Q ss_pred ---ceEEEEeecCc
Q 021744 292 ---SFIMFIGQNNK 302 (308)
Q Consensus 292 ---s~~i~~~~~~~ 302 (308)
++.||.....+
T Consensus 456 id~DVKIWTP~~~e 469 (559)
T KOG1334|consen 456 IDHDVKIWTPLTAE 469 (559)
T ss_pred CccceeeecCCccc
Confidence 88888775444
No 204
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.52 E-value=2.4e-13 Score=117.36 Aligned_cols=179 Identities=14% Similarity=0.096 Sum_probs=127.7
Q ss_pred EEecCCCe---eeccCCCcEEEEECCC-CCCcccccc--eeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCC-----
Q 021744 73 RFANNTWG---RNNNFNNHSNNYRAGN-SKNSNINNR--AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG----- 139 (308)
Q Consensus 73 ~~s~~g~~---~s~~~d~~i~vwd~~~-~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~----- 139 (308)
.|+.+... -.++..|.|-|++++. |+..-.... .....+....|.|-. +.+.+++||.|++|.+..+
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 44444444 2456688999999953 333222222 222336677776654 5589999999999998644
Q ss_pred -ceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEc
Q 021744 140 -FKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNT 217 (308)
Q Consensus 140 -~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~ 217 (308)
..+...+.+|...|+++.|+|- ...|+++++|-+|++||+.+.+...
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~------------------------------- 714 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS------------------------------- 714 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh-------------------------------
Confidence 1456678899999999999994 4678899999999998887654322
Q ss_pred CCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC--CeEEEEecCCCeEEEee
Q 021744 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD--SNRAHFSRDVTSLLGSV 291 (308)
Q Consensus 218 ~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~s~d~~~l~~s~ 291 (308)
.+.+|.+.|..++|+|+ .+|+.+.||+|++|.-++.. +++++-.+..+ ..+..|.-||+++++++
T Consensus 715 ------~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e---~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 715 ------RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE---QPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred ------eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC---CccccCCCCccCcceeEEEEecCcEEEEec
Confidence 45689999999999999 89999999999999988763 55555443322 22337888888888665
No 205
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.3e-12 Score=115.11 Aligned_cols=203 Identities=10% Similarity=0.046 Sum_probs=125.3
Q ss_pred eeEEecCCCe-eeccCC---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEc--CCCcee
Q 021744 71 AKRFANNTWG-RNNNFN---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTV--GDGFKL 142 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~--~~~~~~ 142 (308)
..+|+|||+. +..+.+ ..|.+||+.+++.. .............|+|+|.. ++.+.++...||.+ .++ .
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~ 275 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS--G 275 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC--C
Confidence 5799999988 555432 35999999877542 11122233557889999965 34567777666654 444 2
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeC-CCcEEEEeC--CCCeEEEEEeCCC--eeEEEEcCCCEEEEEc-CC---cEE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDC--ASGQCAGVINLGG--EVGCMISEGPWIFIGV-TN---FVK 213 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~--~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~-d~---~i~ 213 (308)
...+..+........|+||++.|+..+. ++...+|.+ .+++......... ....++++|++|+... ++ .|.
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLY 355 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEE
Confidence 4555556666677899999998876554 466666654 4444322222221 1234578999988543 32 699
Q ss_pred EEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc-CCCe--EEEEEcCCCCcccccceeccccCCCeEE-EEecC
Q 021744 214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDGA--ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD 283 (308)
Q Consensus 214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d 283 (308)
+||+.+++...+... .......|+|+ .|+..+ ..|. +.+.++.. .....+..+.+.+.. +|+|-
T Consensus 356 v~d~~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-----~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 356 VQDLATGQVTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-----RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEECCCCCeEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC-----CceEEeecCCCCCCCCccCCC
Confidence 999998877655432 23467899999 444444 3433 55555533 334445555566666 78763
No 206
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=5.9e-12 Score=102.88 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=137.7
Q ss_pred CCCeeeccCCCcEEEEECCCCCCccccc--ceeeeeeeeeeeecCC-ce-EEeeCC--CeEEEEEcCCCceeeeEeeCc-
Q 021744 77 NTWGRNNNFNNHSNNYRAGNSKNSNINN--RAVIKTDILCRNWVQG-NC-MYGEKC--KFLHSWTVGDGFKLLTQLEGH- 149 (308)
Q Consensus 77 ~g~~~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~-~~g~~d--~~i~iwd~~~~~~~~~~~~~h- 149 (308)
+|..++|-.+|.+++|..+.+....... ......+..+.-.+.. .+ ++|+.. ..+.+||++.. +++.+-+.-
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvp 193 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVP 193 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCC
Confidence 4444888999999999997554221111 1111223444444443 23 678988 89999999987 555443321
Q ss_pred --------ccceEEEEEeCC--CCEEEEeeCCCcEEEEeCCCC-eEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEE
Q 021744 150 --------QKVVSGITLPSG--SDKLYSGSKDETVRVWDCASG-QCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKA 214 (308)
Q Consensus 150 --------~~~v~~~~~~~~--~~~l~s~s~dg~v~~wd~~~~-~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~ 214 (308)
+-.++++.|-+. ...|++++.-+.|++||.+.+ +++..+. .+.++.++ .+.++++++|. .+.+..
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~ 273 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAK 273 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhe
Confidence 234577888876 788999999999999999964 5777777 55666665 68999999887 889999
Q ss_pred EEcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744 215 WNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 215 wd~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~ 259 (308)
||++++... .+.+..+.++++..+|. ++++++.|+.|+|+|+.+.
T Consensus 274 FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 999999988 58899999999999999 9999999999999999985
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.6e-12 Score=114.73 Aligned_cols=220 Identities=14% Similarity=0.049 Sum_probs=133.0
Q ss_pred cCCCCceeEEEeecCC---CCCCCCCCceEEecCC---CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecC
Q 021744 4 DAHGGNKRVFHRLGGG---GGDGGGGGLSTADTRQ---KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANN 77 (308)
Q Consensus 4 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~s~d---~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~ 77 (308)
|.+|.|.+...+.... ..-+-.+..||..+.+ ..|++||..++.+. ......+|.. .++|+||
T Consensus 190 d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~----------~l~~~~g~~~-~~~wSPD 258 (429)
T PRK01742 190 DYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK----------VVASFRGHNG-APAFSPD 258 (429)
T ss_pred CCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE----------EEecCCCccC-ceeECCC
Confidence 4567776654432211 1112225667776543 47999998776110 0111223322 4799999
Q ss_pred CCe-eec-cCCCcEEEE--ECCCCCCcccccceeeeeeeeeeeecCCce-EE-eeCCCeEEEEEcCCCceeeeEeeCccc
Q 021744 78 TWG-RNN-NFNNHSNNY--RAGNSKNSNINNRAVIKTDILCRNWVQGNC-MY-GEKCKFLHSWTVGDGFKLLTQLEGHQK 151 (308)
Q Consensus 78 g~~-~s~-~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-g~~d~~i~iwd~~~~~~~~~~~~~h~~ 151 (308)
|+. +.+ +.++.+.|| |+++++.. ....+...+....|+|+|.. ++ ...++...||++.........+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~--~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPS--QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeE--eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC
Confidence 998 544 568877666 55444322 22223334667889999975 43 4457888888775431222223 3433
Q ss_pred ceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEc---CCCceeeee
Q 021744 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNT---QTNTDLSLS 226 (308)
Q Consensus 152 ~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~---~~~~~~~~~ 226 (308)
....|+|++++|+..+.++ +.+||+.+++...... .......++|++++|+.++ ++.+.+|++ .......+.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 4678999999998887765 5569999887553322 1222234678999888655 776666654 333344777
Q ss_pred CCCCCEEEEEEeCC
Q 021744 227 GPVGQVYAMAVGND 240 (308)
Q Consensus 227 ~~~~~v~~~~~~~~ 240 (308)
.|.+.+...+|+|-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 88888888999873
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4.7e-13 Score=113.69 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=105.9
Q ss_pred CCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--c-eEEeeCCCeE
Q 021744 58 LPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--N-CMYGEKCKFL 131 (308)
Q Consensus 58 ~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~g~~d~~i 131 (308)
..+...+.||++. ++.|+.+|.. ++|+.|-.+.|||.-..+.+.....+|...+.++.|-|.. . .++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4445567899999 9999999999 9999999999999977777766778888899999998865 2 3889999999
Q ss_pred EEEEcCCC---------ceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCC
Q 021744 132 HSWTVGDG---------FKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 132 ~iwd~~~~---------~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~ 181 (308)
+++|+... .+..+.+..|...|..++..|++ ..+.++++||+++-+|++.
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99999842 24556677899999999999988 7789999999999999985
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=5.1e-12 Score=111.80 Aligned_cols=201 Identities=9% Similarity=0.022 Sum_probs=127.8
Q ss_pred eeEEecCCCe-eeccC---CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCC--eEEEEEcCCCcee
Q 021744 71 AKRFANNTWG-RNNNF---NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCK--FLHSWTVGDGFKL 142 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~--~i~iwd~~~~~~~ 142 (308)
..+|+|||+. +..+. +..|.+||+.+++.. ....+...+....|+|+|.. ++.+.++ .|++||+.++ +
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~- 281 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG-T- 281 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC-c-
Confidence 6899999998 55442 467999999877542 22223334567789999965 3444554 4777888877 3
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc--C--CcEE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--T--NFVK 213 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d--~~i~ 213 (308)
...+..+........|+||++.|+..+. ++ .|.++|+..++........... ..++|+++.|+... . ..|.
T Consensus 282 ~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 282 TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence 3456666666778999999998877664 33 6888898776554333333222 23568999888543 2 3688
Q ss_pred EEEcCCCceeeeeCCCCCEEEEEEeCC--EEEE-EcCC-----CeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744 214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA-GTQD-----GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR 282 (308)
Q Consensus 214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~-g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~ 282 (308)
+||+.++....+.. ...+....|+|| .|+. .... ..+.++|+..+. ...+.. ...+.. +|+|
T Consensus 362 ~~d~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~-----~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 362 VMKPDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN-----EREVPT-PGDASDPAWSP 432 (435)
T ss_pred EEECCCCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc-----eEEccC-CCCccCcccCC
Confidence 99987665543332 234678899999 4443 3322 357888887642 233332 334555 7765
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=4.1e-12 Score=103.77 Aligned_cols=207 Identities=11% Similarity=0.066 Sum_probs=149.0
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCC--CcEEEEECCCCCCc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFN--NHSNNYRAGNSKNS 100 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d--~~i~vwd~~~~~~~ 100 (308)
+..|++|-.+|.+.+|....+ .+|. .++.. +..+.+. .+.-+|.-.+ |+|+.. +.++|||++..+++
T Consensus 115 dg~Litc~~sG~l~~~~~k~~------d~hs-s~l~~-la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi 186 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSG------DLHS-SKLIK-LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI 186 (412)
T ss_pred CCEEEEEecCCcEEEEeccCC------cccc-cccee-eecCCceeeeccCCCCCceEecCchhcccceeeeecccceee
Confidence 568899999999999987755 2221 11111 1222222 4556666555 779988 88999999876544
Q ss_pred cccccee------eee--eeeeeeecC--C-ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744 101 NINNRAV------IKT--DILCRNWVQ--G-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS 169 (308)
Q Consensus 101 ~~~~~~~------~~~--~~~~~~~~~--~-~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 169 (308)
-...... .-+ +..+.|.+. . .++++..-+.+++||.+..++++..+.-.+.+++++...|+++.+++|.
T Consensus 187 w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 187 WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN 266 (412)
T ss_pred eeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec
Confidence 3222111 112 344556555 2 4489999999999999988788989888899999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEE-Ee-CCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC
Q 021744 170 KDETVRVWDCASGQCAGV-IN-LGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND 240 (308)
Q Consensus 170 ~dg~v~~wd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~ 240 (308)
.-+.+..+|++.++.... ++ ..+.++.+. +..+++++++ |..++|+|+.+.+++.-..-...++++.+.++
T Consensus 267 ~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999999999988877 54 566677763 5567888777 99999999999766622223445677777554
No 211
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.3e-10 Score=104.04 Aligned_cols=269 Identities=10% Similarity=0.046 Sum_probs=173.5
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC---e-eeccCCCcEEEEECCCCCC
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW---G-RNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~---~-~s~~~d~~i~vwd~~~~~~ 99 (308)
.....-+..+..|.|+...++ .....+.+|..+ .+.+.|... + .+++.||+|++||...+..
T Consensus 27 D~k~l~~~~~~~V~VyS~~Tg------------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 27 DAKFLFLCTGNFVKVYSTATG------------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred CCcEEEEeeCCEEEEEecchH------------hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 345555666789999998887 122255667666 566665544 4 7999999999999976653
Q ss_pred cccccceeeee---------------------------------------------------------eeeeeeecCCce
Q 021744 100 SNINNRAVIKT---------------------------------------------------------DILCRNWVQGNC 122 (308)
Q Consensus 100 ~~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~~~ 122 (308)
+.......... ..++.+.+.+..
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 22111000000 112222333333
Q ss_pred EEeeCCCeEEEEEcCCCceeee---EeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC--C--eEEEEEe-CCCee
Q 021744 123 MYGEKCKFLHSWTVGDGFKLLT---QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS--G--QCAGVIN-LGGEV 194 (308)
Q Consensus 123 ~~g~~d~~i~iwd~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~--~--~~~~~~~-~~~~v 194 (308)
.....+..+.+|......+... .-..|.-.+++.+++|.+++++++..||.|.+|.--. . .....+. |..++
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 3333455667787776421111 1124777789999999999999999999999995332 1 2223344 77778
Q ss_pred EEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceec
Q 021744 195 GCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL 269 (308)
Q Consensus 195 ~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 269 (308)
.++ +++|.+|++|+ .+.+.+|.+.+++.+-+..-.++|..+.++|| +.+...+|+.|.+....+... ...+..+
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~-k~tIsgi 333 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI-KSTISGI 333 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh-hhhccCc
Confidence 776 68999999988 99999999999997777777889999999999 778888899999998755311 0112222
Q ss_pred cc--------cCCCeEE-EEec-CCCeEEE--eeceEEEEeecCceeEEe
Q 021744 270 KV--------HTDSNRA-HFSR-DVTSLLG--SVSFIMFIGQNNKGVVCY 307 (308)
Q Consensus 270 ~~--------~~~~v~~-~~s~-d~~~l~~--s~s~~i~~~~~~~~~~~~ 307 (308)
.. .....+. +++| .+..++- .+.+.+|...++..+.-|
T Consensus 334 ~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 334 KPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred cCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeE
Confidence 21 1333444 7777 3333332 236777777777776544
No 212
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.46 E-value=1.1e-11 Score=109.78 Aligned_cols=228 Identities=11% Similarity=0.004 Sum_probs=150.1
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEe--cCCCe-eeccCCCcEEEEECCCCCC
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFA--NNTWG-RNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s--~~g~~-~s~~~d~~i~vwd~~~~~~ 99 (308)
...++|.|+.+|.|-+||...+.+-+ ..+.......|..+ .+.|. +.+.- ++++.||.|..|+++.-..
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~ 327 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTP------PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSL 327 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCC------CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecccccc
Confidence 35789999999999999988762211 12222333456555 44443 33322 9999999999998853221
Q ss_pred cc-c---cccee-------eeeeeeeeeecCC--ceEEeeCCCeEEEEEcC---CCc----eeeeEeeCcccceEEEEEe
Q 021744 100 SN-I---NNRAV-------IKTDILCRNWVQG--NCMYGEKCKFLHSWTVG---DGF----KLLTQLEGHQKVVSGITLP 159 (308)
Q Consensus 100 ~~-~---~~~~~-------~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~---~~~----~~~~~~~~h~~~v~~~~~~ 159 (308)
.. . ....+ ...+..+.|.+.. .++.|+++|.|..-.-. ... +....+..|.++|+++.++
T Consensus 328 P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~n 407 (555)
T KOG1587|consen 328 PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRN 407 (555)
T ss_pred chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecC
Confidence 10 0 11111 1126677777765 45999999999873332 221 2233555688999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCC-CCeEEEEEe-CCCeeEEE-EcCCC--EEEEEc-CCcEEEEEcCCCcee---eeeCCCC
Q 021744 160 SGSDKLYSGSKDETVRVWDCA-SGQCAGVIN-LGGEVGCM-ISEGP--WIFIGV-TNFVKAWNTQTNTDL---SLSGPVG 230 (308)
Q Consensus 160 ~~~~~l~s~s~dg~v~~wd~~-~~~~~~~~~-~~~~v~~~-~~~~~--~l~~~~-d~~i~~wd~~~~~~~---~~~~~~~ 230 (308)
|=...++..+.|-+|+||... ...++..+. ....+.++ |+..+ .++++. +|.|.+||+...... +...+..
T Consensus 408 PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~ 487 (555)
T KOG1587|consen 408 PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP 487 (555)
T ss_pred CCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc
Confidence 976555444449999999987 566666665 44546655 44433 445555 999999999865432 4444455
Q ss_pred CEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744 231 QVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 231 ~v~~~~~~~~--~l~~g~~dg~i~iwd~~~ 258 (308)
..+.+.+++. .+++|...|.+.+|++..
T Consensus 488 ~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 488 ALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 6677778885 899999999999999964
No 213
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.7e-12 Score=104.25 Aligned_cols=185 Identities=14% Similarity=0.136 Sum_probs=139.0
Q ss_pred ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc-----eeeeEee-CcccceEEEEEeCCCCEEEEeeCCCcEE
Q 021744 103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF-----KLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVR 175 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~-----~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~ 175 (308)
....|.+.+..+.|+..+.. ++|+.|..+++|++.... +++.... .|...|.|++|+....++++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 34677788999999999977 899999999999986321 3444333 3568999999999899999999999999
Q ss_pred EEeCCCCeEEEEEeCCC---eeEEE--EcCCCEEEEEc-CCcEEEEEcCCCce-e---eeeCCCCCEEEEEEeCC---EE
Q 021744 176 VWDCASGQCAGVINLGG---EVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTD-L---SLSGPVGQVYAMAVGND---LL 242 (308)
Q Consensus 176 ~wd~~~~~~~~~~~~~~---~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~-~---~~~~~~~~v~~~~~~~~---~l 242 (308)
+.|+++.+.+..+.++. .+..+ .|-.+.+++.+ ++.|.+||.+..+. . -+........++.|+|. +|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 99999999999998665 44444 45566666554 99999999987662 2 23344557888999998 89
Q ss_pred EEEcCCCeEEEEEcCCCCcccccceecc------c-cCCCeEEEEecCCCeEEEe
Q 021744 243 FAGTQDGAILAWKFNVTTNCFEPAASLK------V-HTDSNRAHFSRDVTSLLGS 290 (308)
Q Consensus 243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~------~-~~~~v~~~~s~d~~~l~~s 290 (308)
++.+..+-+.+||.+.+. .++.... . ...+....|+|.|..+++-
T Consensus 211 ~~~~~~~G~~~~D~R~~~---~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQA---RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred EeccccCCCCceeecccc---chHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 999999999999998764 2332221 1 1223334899998877643
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=4.5e-11 Score=105.67 Aligned_cols=207 Identities=11% Similarity=0.021 Sum_probs=131.4
Q ss_pred CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee---CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC
Q 021744 87 NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS 162 (308)
Q Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~---~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (308)
.+|.+||....... ....+...+....|+|++.. ++.+ ....|++||+.++. . ..+....+.....+|+|++
T Consensus 184 ~~l~i~D~~g~~~~--~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~-~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDGYNPQ--TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-R-ELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCCCCce--EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-E-EEeccCCCCccCceECCCC
Confidence 46899998644322 22233445778899999965 5444 23579999998773 2 2333344555688999999
Q ss_pred CEEE-EeeCCC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeeeCCCCCEE
Q 021744 163 DKLY-SGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVY 233 (308)
Q Consensus 163 ~~l~-s~s~dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~~~~~~v~ 233 (308)
+.|+ +.+.++ .|++||+.+++......+.... .+++++++.|+..+ ++ .|.++|+.+++...+..+.....
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~ 339 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNA 339 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCcc
Confidence 8774 556665 5999999988754433332222 34568899887554 33 47778888877664443334455
Q ss_pred EEEEeCC--EEEEEcCC-C--eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecCce
Q 021744 234 AMAVGND--LLFAGTQD-G--AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNNKG 303 (308)
Q Consensus 234 ~~~~~~~--~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~~ 303 (308)
..+|+|+ +++..+.+ + .|.+||+.++. . ..+. +...... .|+|||++++.+. ...||....+.+
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~----~-~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS----V-RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCC----e-EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 7899999 55554333 2 69999998753 2 2333 2223345 9999999887444 346777665443
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=7.2e-11 Score=101.33 Aligned_cols=250 Identities=8% Similarity=-0.018 Sum_probs=148.0
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCcccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
+.++..++.|+.|.++|..+. +.......|.....+++++||++ ++...++++.++|.++.+.+...
T Consensus 48 gr~~yv~~rdg~vsviD~~~~-----------~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATG-----------KVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSS-----------SEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred CCEEEEEcCCCeEEEEECCcc-----------cEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 667777789999999999887 22222122222227999999999 45557899999999887765432
Q ss_pred cce------eeeeeeeeeeecCCc-eEEeeC-CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEE-eeCCCcE
Q 021744 104 NRA------VIKTDILCRNWVQGN-CMYGEK-CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS-GSKDETV 174 (308)
Q Consensus 104 ~~~------~~~~~~~~~~~~~~~-~~~g~~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~dg~v 174 (308)
... ....+..+..++... .+..-. .+.|-+.|..+..........-........|+|++++++. ...+..|
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 211 112244555566665 455444 4788888877653333233334556778999999998755 4567799
Q ss_pred EEEeCCCCeEEEEEe-----CCCeeEEEE-----------cCCCEEE-EEcCCcEEEEEcCCCcee-eeeCCCCCEEEEE
Q 021744 175 RVWDCASGQCAGVIN-----LGGEVGCMI-----------SEGPWIF-IGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMA 236 (308)
Q Consensus 175 ~~wd~~~~~~~~~~~-----~~~~v~~~~-----------~~~~~l~-~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~ 236 (308)
-++|.++++.+..+. ++.+...+- ..+...+ .-....+.+||....+.. ++...... .-+.
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 999999998887765 222233221 1222222 122345556787777776 56655555 6788
Q ss_pred EeCC--EEEEE----cCCCeEEEEEcCCCCcccccceeccccCC-CeEE-EEecCCCeEEEee
Q 021744 237 VGND--LLFAG----TQDGAILAWKFNVTTNCFEPAASLKVHTD-SNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 237 ~~~~--~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~-~~s~d~~~l~~s~ 291 (308)
.+|+ ++.+. ...+.|.++|.++. +.+.++..... .+.. .|++||+.+..|.
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl----~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~ 334 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTL----KVVKTITPGPGKRVVHMEFNPDGKEVWVSV 334 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGT----EEEE-HHHHHT--EEEEEE-TTSSEEEEEE
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCc----ceeEEEeccCCCcEeccEECCCCCEEEEEE
Confidence 8999 66666 55689999999986 55666653333 3555 9999999988765
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=8.4e-11 Score=104.08 Aligned_cols=207 Identities=9% Similarity=-0.062 Sum_probs=134.7
Q ss_pred CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee---CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC
Q 021744 86 NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG 161 (308)
Q Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~---~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~ 161 (308)
...|.+||.+..... ....+...+....|+|+|.. ++.+ .+..|++||+.++. . ..+..+.+.+...+|+||
T Consensus 181 ~~~l~~~d~dg~~~~--~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~-~~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 181 IKRLAIMDQDGANVR--YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-R-ELVGNFPGMTFAPRFSPD 256 (435)
T ss_pred ceEEEEECCCCCCcE--EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-E-EEeecCCCcccCcEECCC
Confidence 347888888544322 22334445888999999965 4433 35789999998873 3 345556677888999999
Q ss_pred CCEEE-EeeCCCc--EEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeeeCCCCCE
Q 021744 162 SDKLY-SGSKDET--VRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQV 232 (308)
Q Consensus 162 ~~~l~-s~s~dg~--v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~~~~~~v 232 (308)
++.|+ +.+.++. |.+||+.+++......+.... ..++++++.|+..+ ++ .|+++|+.+++...+..+...+
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~ 336 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY 336 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence 98764 6666665 777799887664433333322 34568899887544 33 7889999887776655555567
Q ss_pred EEEEEeCC--EEEEEcCC---CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeec-------eEEEEee
Q 021744 233 YAMAVGND--LLFAGTQD---GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVS-------FIMFIGQ 299 (308)
Q Consensus 233 ~~~~~~~~--~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s-------~~i~~~~ 299 (308)
....|+|+ .|+..+.+ ..|.+||+..+. ...+.. ...+.. .|+|||+.|+.... ..||...
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 77889999 55554432 368888876542 222221 223556 99999999874431 3677766
Q ss_pred cCc
Q 021744 300 NNK 302 (308)
Q Consensus 300 ~~~ 302 (308)
.+.
T Consensus 411 l~g 413 (435)
T PRK05137 411 LTG 413 (435)
T ss_pred CCC
Confidence 443
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=4.7e-11 Score=105.22 Aligned_cols=220 Identities=11% Similarity=0.032 Sum_probs=134.1
Q ss_pred cCCCCceeEEEeec----CCCCCCCCCCceEEec---CCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEec
Q 021744 4 DAHGGNKRVFHRLG----GGGGDGGGGGLSTADT---RQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFAN 76 (308)
Q Consensus 4 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~s---~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~ 76 (308)
|.+|.|.|...+.. .+.-..+ |..||..+ .+..|++|+...+.. . .. ....++.. ..+|+|
T Consensus 185 d~dg~~~~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~---~------~l-~~~~~~~~-~~~~SP 252 (429)
T PRK03629 185 DYDGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAV---R------QV-ASFPRHNG-APAFSP 252 (429)
T ss_pred cCCCCCCEEeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCe---E------Ec-cCCCCCcC-CeEECC
Confidence 45688877765533 1222222 45555443 345789999876611 0 00 11122222 479999
Q ss_pred CCCe-e-eccCCC--cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC-CC--eEEEEEcCCCceeeeEeeC
Q 021744 77 NTWG-R-NNNFNN--HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK-CK--FLHSWTVGDGFKLLTQLEG 148 (308)
Q Consensus 77 ~g~~-~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-d~--~i~iwd~~~~~~~~~~~~~ 148 (308)
||+. + +.+.++ .|.+||+++++.. ........+....|+|+|.. ++.+. ++ .|+++++.++ + ...+..
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~--~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-~-~~~lt~ 328 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-A-PQRITW 328 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEE--EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-C-eEEeec
Confidence 9998 4 444454 4888999776533 11122234567889999975 44443 34 4555566665 2 234443
Q ss_pred cccceEEEEEeCCCCEEEEeeCC---CcEEEEeCCCCeEEEEEeC-CCeeEEEEcCCCEEEEEc-CC---cEEEEEcCCC
Q 021744 149 HQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINL-GGEVGCMISEGPWIFIGV-TN---FVKAWNTQTN 220 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s~d---g~v~~wd~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~-d~---~i~~wd~~~~ 220 (308)
+........|+||+++++..+.+ ..|.+||+.+++....... ......++++++.|+.++ ++ .+.++++...
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 44456678999999998776543 3588899988764432221 122234678999888554 44 4788888766
Q ss_pred ceeeeeCCCCCEEEEEEeC
Q 021744 221 TDLSLSGPVGQVYAMAVGN 239 (308)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~ 239 (308)
....+..|...+...+|+|
T Consensus 409 ~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CeEECccCCCCcCCcccCC
Confidence 6667778888888888887
No 218
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.42 E-value=6.6e-10 Score=96.73 Aligned_cols=253 Identities=15% Similarity=0.090 Sum_probs=147.8
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
+..++.++.++.+..+|..+++. +.+ ........ ....+ .+.. +.+..++.|..||.++++..-...
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~-----~W~-~~~~~~~~----~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKE-----LWR-AKLSSEVL----SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcE-----eee-eccCceee----cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 55677777888888888877621 000 00000000 00111 2334 667778999999998886542211
Q ss_pred ceeee---eeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc-cc------c---e-EEEEEeCCCCEEEEeeC
Q 021744 105 RAVIK---TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH-QK------V---V-SGITLPSGSDKLYSGSK 170 (308)
Q Consensus 105 ~~~~~---~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h-~~------~---v-~~~~~~~~~~~l~s~s~ 170 (308)
..... .........++..+.+..++.+..+|++++ +.+.+.... .. . + ....+ .+..++.++.
T Consensus 173 ~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG-~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~ 249 (377)
T TIGR03300 173 RVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTG-QPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSY 249 (377)
T ss_pred cCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCC-CEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEc
Confidence 11000 000001112345577788899999999988 444433211 00 0 0 11112 2457888889
Q ss_pred CCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEE-EcCCcEEEEEcCCCcee-eeeCC-CCCEEEEEEeCCEEEEEcC
Q 021744 171 DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGP-VGQVYAMAVGNDLLFAGTQ 247 (308)
Q Consensus 171 dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~d~~i~~wd~~~~~~~-~~~~~-~~~v~~~~~~~~~l~~g~~ 247 (308)
+|.+..+|.++++.+........ ......+..+++ ..++.+..+|..+++.+ ..... .....+..+..+.+++++.
T Consensus 250 ~g~l~a~d~~tG~~~W~~~~~~~-~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~ 328 (377)
T TIGR03300 250 QGRVAALDLRSGRVLWKRDASSY-QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDF 328 (377)
T ss_pred CCEEEEEECCCCcEEEeeccCCc-cCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeC
Confidence 99999999999998877663322 122233455554 45899999999999877 33221 1223333444558888999
Q ss_pred CCeEEEEEcCCCCcccccceeccccCCCeEE--EEecCCCeEEEeeceEEEEeecCceeEEeC
Q 021744 248 DGAILAWKFNVTTNCFEPAASLKVHTDSNRA--HFSRDVTSLLGSVSFIMFIGQNNKGVVCYR 308 (308)
Q Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--~~s~d~~~l~~s~s~~i~~~~~~~~~~~~~ 308 (308)
+|.|+++|..++ +.+..++.+...+.. .+. ++ .||+...+..++|||
T Consensus 329 ~G~l~~~d~~tG----~~~~~~~~~~~~~~~sp~~~-~~---------~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDG----SFVARLKTDGSGIASPPVVV-GD---------GLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCC----CEEEEEEcCCCccccCCEEE-CC---------EEEEEeCCceEEEeC
Confidence 999999999887 666666655544333 322 22 466666677778876
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.40 E-value=4.1e-11 Score=101.82 Aligned_cols=184 Identities=13% Similarity=0.107 Sum_probs=132.2
Q ss_pred cCCCe-eeccCCCcEEEEECCCCCC---cccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCC----------
Q 021744 76 NNTWG-RNNNFNNHSNNYRAGNSKN---SNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG---------- 139 (308)
Q Consensus 76 ~~g~~-~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~---------- 139 (308)
|.+-. ..|-.-|.|.+.|....+. ........+..+.++.|-+.+ .++.+-.+|.+++||..-.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 44444 7777778888887743211 111112233447888887766 3367778899999975311
Q ss_pred ----c-------------eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCee-EEEEc
Q 021744 140 ----F-------------KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEV-GCMIS 199 (308)
Q Consensus 140 ----~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v-~~~~~ 199 (308)
. .++..+.-.++.|...+|+||+++||+.+.||.++|+|..+.+.+...+ ..+-. .|++|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 0 0111111234578899999999999999999999999999887776666 33333 34469
Q ss_pred CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeC--------------------------------------
Q 021744 200 EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN-------------------------------------- 239 (308)
Q Consensus 200 ~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~-------------------------------------- 239 (308)
|+++|++|. |.-|.||.+...+.+ .=.+|.++|..++|.|
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~ 422 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGC 422 (636)
T ss_pred CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCC
Confidence 999999988 889999999988888 6789999999999983
Q ss_pred ----------C--EEEEEcCCCeEEEEEcCCC
Q 021744 240 ----------D--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 240 ----------~--~l~~g~~dg~i~iwd~~~~ 259 (308)
. .|.+.+.|-.+.+||+...
T Consensus 423 ~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 423 PLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cccccccccceEEEeecccccceEEEEecchh
Confidence 1 5778889999999998763
No 220
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=6.2e-11 Score=104.95 Aligned_cols=202 Identities=13% Similarity=0.088 Sum_probs=123.4
Q ss_pred eeEEecCCCe-eeccCC---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-E-EeeCCC--eEEEEEcCCCcee
Q 021744 71 AKRFANNTWG-RNNNFN---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-M-YGEKCK--FLHSWTVGDGFKL 142 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~d~--~i~iwd~~~~~~~ 142 (308)
...|+|||+. +..+.+ ..|.+||+.+++... ............|+|+|.. + +...++ .|++||+.++ +
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~-~- 278 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR-Q- 278 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC-C-
Confidence 5799999998 544433 358889998764321 1112223445789999965 3 344444 6888899887 3
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeCCC--eeEEEEcCCCEEEEEc--CC--cEE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGG--EVGCMISEGPWIFIGV--TN--FVK 213 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~--~i~ 213 (308)
...+..+........|+||++.++..+. ++ .|.++|+.+++......... ....++++++.++... ++ .|.
T Consensus 279 ~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~ 358 (430)
T PRK00178 279 LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVA 358 (430)
T ss_pred eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEE
Confidence 3345556666777899999988766554 33 57778888776443322211 1234568899887543 33 688
Q ss_pred EEEcCCCceeeeeCCCCCEEEEEEeCC--EE-EEEcCCC--eEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744 214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDG--AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR 282 (308)
Q Consensus 214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~ 282 (308)
+||+.+++...+... .......|+|+ .+ ++...++ .+.++++... ....+..+...+.. +|+|
T Consensus 359 ~~dl~tg~~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-----~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 359 AQDLQRGSVRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-----VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEECCCCCEEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-----ceEECcCCCCCcCCCccCC
Confidence 999998876644322 22235689998 44 4443333 4666676542 23344444445555 7765
No 221
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7.9e-11 Score=104.25 Aligned_cols=202 Identities=12% Similarity=0.074 Sum_probs=122.5
Q ss_pred eeEEecCCCe-eeccC-CC--cEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCe--EEEEEcCCCcee
Q 021744 71 AKRFANNTWG-RNNNF-NN--HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKF--LHSWTVGDGFKL 142 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~--i~iwd~~~~~~~ 142 (308)
...|+|||+. +..+. ++ .|.+||+.+++... ............|+|+|.. ++...++. |+++|+.++ +
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg-~- 297 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK-A- 297 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC-C-
Confidence 4699999998 54433 33 58888987765321 1111222345789999975 33455664 778888876 3
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeCCC--eeEEEEcCCCEEEEEc--CC--cEE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGG--EVGCMISEGPWIFIGV--TN--FVK 213 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~--~i~ 213 (308)
...+..+.......+|+||++.++..+. ++ .|.++|+.+++......... ....+++++++|+... ++ .|.
T Consensus 298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 298 LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEE
Confidence 3445555566778899999998765553 34 46667887776543322111 1235578998887543 33 567
Q ss_pred EEEcCCCceeeeeCCCCCEEEEEEeCC--E-EEEEcCCCe--EEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744 214 AWNTQTNTDLSLSGPVGQVYAMAVGND--L-LFAGTQDGA--ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR 282 (308)
Q Consensus 214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~-l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~ 282 (308)
++|+.+++...+.... ......|+|+ . +++...++. +++++... .....+..+...+.. +|+|
T Consensus 378 ~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-----~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 378 RQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-----RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCC-----CceEECcCCCCCcCCCccCC
Confidence 7898888766443321 2234579998 4 444444444 66777643 344455555555666 7776
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.37 E-value=1.6e-10 Score=92.44 Aligned_cols=218 Identities=10% Similarity=-0.004 Sum_probs=159.3
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCC--cccccceeeeeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCc--eeee
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKN--SNINNRAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGF--KLLT 144 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~--~~~~ 144 (308)
+.+|++|+.. |.+-..+.|.||.....+. ....+..|...+..+.+.|.. ++++++.|..-++|....+. ++.-
T Consensus 15 chAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl 94 (361)
T KOG1523|consen 15 CHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL 94 (361)
T ss_pred eeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce
Confidence 6799999999 9999999999999876652 222445677778899999988 55999999999999984332 3334
Q ss_pred EeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-----CCCeeEEE--EcCCCEEEEEc-CCcEEEEE
Q 021744 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-----LGGEVGCM--ISEGPWIFIGV-TNFVKAWN 216 (308)
Q Consensus 145 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-----~~~~v~~~--~~~~~~l~~~~-d~~i~~wd 216 (308)
.+..+....+++.|+|.++.+++||.-..|.+|-++...--..-+ ....+.++ .+++-+|++|+ |+..++|.
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 455688999999999999999999999999999887655443322 44556666 36777888887 99888885
Q ss_pred cC-----CC-------------cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCC
Q 021744 217 TQ-----TN-------------TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDS 275 (308)
Q Consensus 217 ~~-----~~-------------~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 275 (308)
.- .. +++ .+....+.+..+.|+|+ .|+-.+.|..+.+-|...+. +.+.......-+
T Consensus 175 ayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~---~~v~~~~~~~lP 251 (361)
T KOG1523|consen 175 AYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS---ERVQSVATAQLP 251 (361)
T ss_pred EeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc---hhccchhhccCC
Confidence 32 11 122 23345678999999998 89999999999999988763 233444333355
Q ss_pred eEE-EEecCCCeEEEee
Q 021744 276 NRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 276 v~~-~~s~d~~~l~~s~ 291 (308)
..+ .|-.+...+.+..
T Consensus 252 ~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 252 LLSVSWISENSVVAAGY 268 (361)
T ss_pred ceeeEeecCCceeecCC
Confidence 555 7766665555443
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=8.4e-12 Score=104.14 Aligned_cols=230 Identities=12% Similarity=0.085 Sum_probs=163.1
Q ss_pred CCCCCceEEecCCCeEEEeecCCCCC----------CCCCcccccCCCC-----------------CCccccccc-eeEE
Q 021744 23 GGGGGLSTADTRQKVCNYWRAGKCNR----------FPCPYLHRELPLP-----------------PAATANGAA-AKRF 74 (308)
Q Consensus 23 ~~~~~~~~s~s~d~~i~~W~~~~~~~----------~~~~~~~~~~~~~-----------------~~~~gh~~~-~i~~ 74 (308)
+..|..++-++..|.+-.+|..+.+. ....|||.++-.. ..+..|... .+.|
T Consensus 138 trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLeF 217 (545)
T KOG1272|consen 138 TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARLEF 217 (545)
T ss_pred cCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhhcc
Confidence 44578899999999999988776532 1233555543222 112233333 5777
Q ss_pred ecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccc
Q 021744 75 ANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKV 152 (308)
Q Consensus 75 s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~ 152 (308)
-|---+ ++++..|-++--|+.+|+.+.. ...-.+.+..+...|-+.. -.|...|+|.+|.+... +++..+..|.++
T Consensus 218 LPyHfLL~~~~~~G~L~Y~DVS~GklVa~-~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~ 295 (545)
T KOG1272|consen 218 LPYHFLLVAASEAGFLKYQDVSTGKLVAS-IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-EPLVKILCHRGP 295 (545)
T ss_pred cchhheeeecccCCceEEEeechhhhhHH-HHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-chHHHHHhcCCC
Confidence 887777 9999999999999998876632 2233334556666676655 56888999999999988 777778889999
Q ss_pred eEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEcCCcEEEEE-cCCC---ceeeeeC
Q 021744 153 VSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM-ISEGPWIFIGVTNFVKAWN-TQTN---TDLSLSG 227 (308)
Q Consensus 153 v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~d~~i~~wd-~~~~---~~~~~~~ 227 (308)
|.+++++++|.+++|.+.|..++|||++....+.++..+.+...+ .++..+|+++....+.+|- .-.+ ....+..
T Consensus 296 V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~ 375 (545)
T KOG1272|consen 296 VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMN 375 (545)
T ss_pred cceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhh
Confidence 999999999999999999999999999998877777765555555 3556677777788899994 2221 1112222
Q ss_pred C--CCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744 228 P--VGQVYAMAVGND--LLFAGTQDGAILAW 254 (308)
Q Consensus 228 ~--~~~v~~~~~~~~--~l~~g~~dg~i~iw 254 (308)
| ..+|..+.|.|- .|-.|...|.-.|.
T Consensus 376 H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 376 HRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred hccCcccccceeccHHHeeeccccCCceeEe
Confidence 2 348999999985 66666666554444
No 224
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=8e-10 Score=97.56 Aligned_cols=206 Identities=12% Similarity=0.010 Sum_probs=130.3
Q ss_pred CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC---CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC
Q 021744 86 NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG 161 (308)
Q Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~ 161 (308)
...|.++|.+..+.. ....+...+....|+|++.. ++... ...|++||+.++. . ..+..+...+.+++|+|+
T Consensus 169 ~~~l~~~d~~g~~~~--~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~-~~~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 169 RYELQVADYDGANPQ--TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-R-EKVASFPGMNGAPAFSPD 244 (417)
T ss_pred cceEEEEcCCCCCCE--EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-E-EEeecCCCCccceEECCC
Confidence 345777877533221 12223334667789999976 44332 3589999998873 2 233345566778999999
Q ss_pred CCEEE-EeeCCC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeeeCCCCCE
Q 021744 162 SDKLY-SGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQV 232 (308)
Q Consensus 162 ~~~l~-s~s~dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~~~~~~v 232 (308)
++.|+ +.+.++ .|++||+.+++......+.... ..+.++++.|+..+ .+ .|.++|+.+++...+..+....
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~ 324 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN 324 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 98775 445444 5889999887654433333222 24467888877543 23 6888899888766665556667
Q ss_pred EEEEEeCC--EEEEEcCCC---eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecC
Q 021744 233 YAMAVGND--LLFAGTQDG---AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNN 301 (308)
Q Consensus 233 ~~~~~~~~--~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~ 301 (308)
..+.|+|+ +++.++.++ .|.+||+.++. ...+.... .... .|+||+++|+.+. ...+++...+
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-----~~~l~~~~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-----ERVLTDTG-LDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC-----eEEccCCC-CCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 78899998 666666655 78888988742 22222222 2334 8999999888544 2355555533
No 225
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=5.5e-11 Score=108.14 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=134.2
Q ss_pred CCCe-eeccCCCcEEEEECCCCCCcccccceeeee---eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCccc
Q 021744 77 NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKT---DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQK 151 (308)
Q Consensus 77 ~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~ 151 (308)
+... +.+..++.+-+||...+............. ...+.+++..-. ++|+.-+.|.+|+.... +.-..+.||++
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~GHeG 176 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPIRLKGHEG 176 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcceecccCC
Confidence 3344 888888999999997665443333222222 222333444333 77888899999999844 33336899999
Q ss_pred ceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE--EEeCCCeeEEE-EcCCCEEEE-EcCCcEEEEEcCCCceeeeeC
Q 021744 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG--VINLGGEVGCM-ISEGPWIFI-GVTNFVKAWNTQTNTDLSLSG 227 (308)
Q Consensus 152 ~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~--~~~~~~~v~~~-~~~~~~l~~-~~d~~i~~wd~~~~~~~~~~~ 227 (308)
.|.++.++.++.+++++|.|.++++|++++.+... -+.|...+... ..+. .+++ +-|.+.++|+....+...+.+
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~~y~~ 255 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLEVYDE 255 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecccceehhhhh
Confidence 99999999999999999999999999999987765 34476666544 4444 5555 559999999877666667777
Q ss_pred CCC-CEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744 228 PVG-QVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 228 ~~~-~v~~~~~~~~--~l~~g~~dg~i~iwd~~~ 258 (308)
|.. .++.++..++ .+++++.|+.+++||+..
T Consensus 256 h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 256 HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 764 6899999988 899999999999999765
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.1e-10 Score=99.98 Aligned_cols=249 Identities=10% Similarity=0.104 Sum_probs=168.6
Q ss_pred CccCCCCceeEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCC-CC---------CCcccccCCCCC------Ccc
Q 021744 2 DFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNR-FP---------CPYLHRELPLPP------AAT 65 (308)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~-~~---------~~~~~~~~~~~~------~~~ 65 (308)
||||.+-+-|+ ....|+-=++|||..--.|+++|...-.. +. ...|..+..... ...
T Consensus 47 dfe~p~ast~i-------k~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 47 DFEMPTASTRI-------KVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred hcCCcccccee-------EecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence 67777666555 22235556788888999999999765321 00 000111000000 000
Q ss_pred c------cccc-------eeEEe-cCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCc-eEEeeCCCe
Q 021744 66 A------NGAA-------AKRFA-NNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN-CMYGEKCKF 130 (308)
Q Consensus 66 g------h~~~-------~i~~s-~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~ 130 (308)
- |... .++++ |...+..++....|.=.+++.|+.+. +.......+.+|..++-.. +++|+.+|.
T Consensus 120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~-P~~~~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN-PFETDSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccc-ccccccccceeeeecCccceEEecccCce
Confidence 1 1111 45554 34444566666678888888887652 3333445578888877654 488889999
Q ss_pred EEEEEcCCCceeeeEee------Cccc-----ceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCe--eEEE
Q 021744 131 LHSWTVGDGFKLLTQLE------GHQK-----VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE--VGCM 197 (308)
Q Consensus 131 i~iwd~~~~~~~~~~~~------~h~~-----~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~--v~~~ 197 (308)
|..||.++. .....+. .|.+ .|+++.|+.+|-.++.|..+|.|.|||+++.+++..-.|... +..+
T Consensus 199 VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 199 VEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred EEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence 999999987 4454443 2333 499999998899999999999999999999998877765543 4444
Q ss_pred -Ec--C-CCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744 198 -IS--E-GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 198 -~~--~-~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~ 259 (308)
+. + +..+++.....+++||-.+++..........++.+++-|+ +++++-++..+..|-+..-
T Consensus 278 ~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred cccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 21 2 3456666677899999999999866667777999999999 8999999999888877654
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=6e-10 Score=90.60 Aligned_cols=218 Identities=14% Similarity=0.130 Sum_probs=141.3
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc---e---
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF---K--- 141 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~---~--- 141 (308)
.++|++.-.. |++..|-+||+||-... ............+.+++|-|.+.. +.|+ -+-|.+|.....- .
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIR 180 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccc
Confidence 5788886555 99999999999998652 222222233345889999887733 4444 4668899865221 1
Q ss_pred -------eeeEeeCcccceEEEEEeCCCCEEEEeeC-CCcEEEEeCCCCeEEEEEe-CCCee--EEEEcCCCEEEEEc-C
Q 021744 142 -------LLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVIN-LGGEV--GCMISEGPWIFIGV-T 209 (308)
Q Consensus 142 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~-~~~~v--~~~~~~~~~l~~~~-d 209 (308)
.+....+| .+|++|.|++|+..+++++. |..|.+||..+++.+.... ..+-+ ...+|++.+++++. |
T Consensus 181 ~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD 259 (445)
T ss_pred cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence 11223455 68999999999999998876 5689999999988776653 22333 33478999888766 9
Q ss_pred CcEEEEEcCC-CceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccc---------cceecc-----c
Q 021744 210 NFVKAWNTQT-NTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE---------PAASLK-----V 271 (308)
Q Consensus 210 ~~i~~wd~~~-~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~---------~~~~~~-----~ 271 (308)
+..++|+... ..........+.|...+|+|. +|++.+..-.++-........... ++..+. .
T Consensus 260 avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~a 339 (445)
T KOG2139|consen 260 AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICA 339 (445)
T ss_pred ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhc
Confidence 9999996543 333333334558999999998 566666554444333332211111 111111 1
Q ss_pred c----CCCeEE-EEecCCCeEEEee
Q 021744 272 H----TDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 272 ~----~~~v~~-~~s~d~~~l~~s~ 291 (308)
. .+...+ +|.|.|.+|++..
T Consensus 340 g~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 340 GQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred CcccccCccceeeECCCCCEEEEEE
Confidence 1 345667 9999999999765
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=1.4e-10 Score=102.38 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=115.0
Q ss_pred eeEEecCCCe-eeccCC---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-E-EeeCC--CeEEEEEcCCCcee
Q 021744 71 AKRFANNTWG-RNNNFN---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-M-YGEKC--KFLHSWTVGDGFKL 142 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~d--~~i~iwd~~~~~~~ 142 (308)
..+|+|+|+. +....+ ..|.+||+.+++.. ....+......+.|+|++.. + +.+.+ ..|++|++.++ +
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-~- 269 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-Q- 269 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC-C-
Confidence 5689999998 554433 47999999876432 11222333556789999865 3 33443 45888998876 3
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc-CC---cEE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV-TN---FVK 213 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~-d~---~i~ 213 (308)
...+..+........|+|+++.|+..+. ++ .|.++|+.+++........... ..+++++++++.+. ++ .|.
T Consensus 270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIA 349 (417)
T ss_pred EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEE
Confidence 3344445555567899999998876654 33 5888888877654333233222 24468888888654 43 789
Q ss_pred EEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCC---eEEEEEcCC
Q 021744 214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG---AILAWKFNV 258 (308)
Q Consensus 214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg---~i~iwd~~~ 258 (308)
+||+.++....+... .......|+|+ .|+..+.++ .+++.+...
T Consensus 350 ~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 350 VMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 999988766544332 23345689998 555554443 355555443
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.33 E-value=4e-10 Score=88.11 Aligned_cols=128 Identities=12% Similarity=0.190 Sum_probs=89.5
Q ss_pred CeEEEEEcCCCceeeeEeeC-cccceEEEEEeCCCCEEEE--eeCCCcEEEEeCCCCeEEEEEeCCCee-EEEEcCCCEE
Q 021744 129 KFLHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGSDKLYS--GSKDETVRVWDCASGQCAGVINLGGEV-GCMISEGPWI 204 (308)
Q Consensus 129 ~~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s--~s~dg~v~~wd~~~~~~~~~~~~~~~v-~~~~~~~~~l 204 (308)
+...+|.++........+.- ..++|.+++|+|+++.++. |..+..|.+||++ ++.+..+.....- ..++|+|++|
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFL 115 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEE
Confidence 34455555433233444432 3457999999999988654 4467899999997 6666666533222 2346889999
Q ss_pred EEEc----CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcC------CCeEEEEEcCC
Q 021744 205 FIGV----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ------DGAILAWKFNV 258 (308)
Q Consensus 205 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~------dg~i~iwd~~~ 258 (308)
++++ .|.|.+||.++.+.+....|.. +..++|+|+ +|++++. |+.++||++..
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 9754 4679999999888875445554 789999999 7776654 78899999865
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.32 E-value=2.7e-09 Score=91.71 Aligned_cols=165 Identities=16% Similarity=0.257 Sum_probs=113.2
Q ss_pred EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcC
Q 021744 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISE 200 (308)
Q Consensus 123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~ 200 (308)
++-..++.|.+.|..+. +.+..+.........+.++||+++++.++.||.|.++|+.+.+.+.+++.......+ +++
T Consensus 10 V~~~~~~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD 88 (369)
T ss_dssp EEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred EEecCCCEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence 45567899999999998 788888865444456789999999999999999999999999999999965555444 689
Q ss_pred CCEEEEEc--CCcEEEEEcCCCcee-eeeC-------CCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccce
Q 021744 201 GPWIFIGV--TNFVKAWNTQTNTDL-SLSG-------PVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAA 267 (308)
Q Consensus 201 ~~~l~~~~--d~~i~~wd~~~~~~~-~~~~-------~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~ 267 (308)
|++++++. .+.+.++|.++.+.+ .+.. ....+..+..+|. ++++--+-+.|.+.|...... ....
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~--~~~~ 166 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN--LKVT 166 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--EEEE
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--ccee
Confidence 99999765 889999999999877 3332 2346777877777 555555668898889877532 1222
Q ss_pred eccccCCCeEE-EEecCCCeEEEee
Q 021744 268 SLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 268 ~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
.+ .-...... .|+|++++++++.
T Consensus 167 ~i-~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 167 TI-KVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EE-E--TTEEEEEE-TTSSEEEEEE
T ss_pred ee-cccccccccccCcccceeeecc
Confidence 33 23445556 9999999987654
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.31 E-value=3.1e-10 Score=88.72 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=102.4
Q ss_pred eeEEecCCCe--eecc---------CCCcEEEEECCCCCCccccc-ceeeeeeeeeeeecCCce---EEeeCCCeEEEEE
Q 021744 71 AKRFANNTWG--RNNN---------FNNHSNNYRAGNSKNSNINN-RAVIKTDILCRNWVQGNC---MYGEKCKFLHSWT 135 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~---------~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~g~~d~~i~iwd 135 (308)
.+-|+|+|.+ +... .-+...+|.++..+...... ......+..+.|+|++.. +.|..+..|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4677788876 3322 11345666663332221122 223345999999999965 4466778999999
Q ss_pred cCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC---CcEEEEeCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEc---
Q 021744 136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGEVGCM-ISEGPWIFIGV--- 208 (308)
Q Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~v~~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~--- 208 (308)
++ . +.+..+. ...+..+.|+|+|++|+.++.+ |.+.+||.++.+.+.+..+.....+. +|+|++++++.
T Consensus 90 ~~-~-~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 90 VK-G-KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred Cc-c-cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence 97 3 4566654 5677899999999999988754 67999999999999888876654433 68999998642
Q ss_pred ----CCcEEEEEcCCCc
Q 021744 209 ----TNFVKAWNTQTNT 221 (308)
Q Consensus 209 ----d~~i~~wd~~~~~ 221 (308)
|+.++||+.....
T Consensus 166 r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQGRL 182 (194)
T ss_pred ceeccccEEEEEecCeE
Confidence 6789999986443
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=1.9e-11 Score=111.15 Aligned_cols=141 Identities=11% Similarity=0.078 Sum_probs=121.2
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
--++++|+.-+.|.+|+.... ..+..+.||++. .+.++-||.+ ++.|.|.++|+|++++.+.+..
T Consensus 145 ~~~i~~gsv~~~iivW~~~~d------------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHED------------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEEEeccccccEEEEecccc------------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc
Confidence 457899999999999997743 222357899999 8899999999 9999999999999999988876
Q ss_pred ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcc-cceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
.-.+|...+..|.|.+. ..+++++|-+.++|+.+.. .+..+++|. +.|..++.+++...++|++.|+.+++||+..
T Consensus 213 ~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~--~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 213 TGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGT--QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccccccceeEEEEeccc-eeEEeccceEEEEEecccc--eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 77889999999999998 7799999999999977654 355778775 5789999999888999999999999998864
No 233
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.6e-11 Score=104.65 Aligned_cols=120 Identities=18% Similarity=0.328 Sum_probs=99.0
Q ss_pred eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEE--Ec--CCCEEEEEc-CCcEE
Q 021744 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCM--IS--EGPWIFIGV-TNFVK 213 (308)
Q Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~--~~--~~~~l~~~~-d~~i~ 213 (308)
.+..++.||++.|.++.|+.+|.+|++||.|-.+.|||.-..+.+..+. |...|.++ .| +++++++|. |..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456789999999999999999999999999999999999888888887 55666655 33 466777776 99999
Q ss_pred EEEcCCCc---------ee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCC
Q 021744 214 AWNTQTNT---------DL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTT 260 (308)
Q Consensus 214 ~wd~~~~~---------~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~ 260 (308)
++|+...+ .. -+..|...|..|+..|+ .+.++++||+|+-+|++...
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 99998521 11 35678889999999887 89999999999999999754
No 234
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=7.6e-10 Score=95.24 Aligned_cols=230 Identities=14% Similarity=0.106 Sum_probs=152.9
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCccccc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
+..++|....||.+|+|+...+ -++ ..|.|. +..+..++--.|.+.-........
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~------~~~----------------~e~~p~---~~~s~t~~~~~w~L~~~~s~~k~~ 58 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKN------QLQ----------------QEFAPI---ASLSGTCTYTKWGLSADYSPMKWL 58 (541)
T ss_pred hhheEeecCCCCeEEEEEccCc------eee----------------eeeccc---hhccCcceeEEEEEEeccchHHHH
Confidence 4578999999999999998776 011 122222 334444555667652211110000
Q ss_pred ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee--CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE--GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
.. -.....+.+... +-|...|.|.+|++..+ +....+. .|.+.|.++.++.+-..|.|++.|+.+..|+...
T Consensus 59 ~~----~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g-~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 59 SL----EKAKKASLDTSMLVLGTPQGSVLLYSVAGG-EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred hH----HHHhhccCCceEEEeecCCccEEEEEecCC-eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 00 000011222222 66778899999999988 6766665 6999999999998889999999999999999999
Q ss_pred CeEEEEEeC-CCeeE--EEEcCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--------EEEEEcCCC
Q 021744 182 GQCAGVINL-GGEVG--CMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--------LLFAGTQDG 249 (308)
Q Consensus 182 ~~~~~~~~~-~~~v~--~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--------~l~~g~~dg 249 (308)
.+.+..++. ...+. |+.+|++.++++ .++|++||+++++.+ .+.+|.++|++++|..+ .|.+...+.
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~a-s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTA-SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEec-cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 999988883 33333 446787777654 578999999999988 89999999999999643 444555566
Q ss_pred eEEEEEcCCCCcccccceeccccCCCeEE-EE-ecCCC
Q 021744 250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HF-SRDVT 285 (308)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~-s~d~~ 285 (308)
.+.+|-+............+.....++.. .+ ..|+.
T Consensus 213 ~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~ 250 (541)
T KOG4547|consen 213 GITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGT 250 (541)
T ss_pred ceeEEEEEcccccchhheeeccCCCCeEeccccccccc
Confidence 78888776532212344455544555555 33 34444
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.30 E-value=4.5e-10 Score=95.65 Aligned_cols=206 Identities=12% Similarity=0.138 Sum_probs=136.2
Q ss_pred eEEecCCC--eeeccCCCcEEEEECCCCCCccccc--ceeeee-eeeeee-----ecCC-ceEEeeCCCeEEEEEcCCCc
Q 021744 72 KRFANNTW--GRNNNFNNHSNNYRAGNSKNSNINN--RAVIKT-DILCRN-----WVQG-NCMYGEKCKFLHSWTVGDGF 140 (308)
Q Consensus 72 i~~s~~g~--~~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~-~~~~~~-----~~~~-~~~~g~~d~~i~iwd~~~~~ 140 (308)
+.+.++++ ++.-.....+.+|+...+.....++ ...... ..+-.| .+.+ ..+.|-.-|.|.+.|....
T Consensus 127 ~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~- 205 (636)
T KOG2394|consen 127 TNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF- 205 (636)
T ss_pred eeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh-
Confidence 34444433 3555556678999886433222111 111111 222222 1222 3366777888888887653
Q ss_pred eeeeEee----CcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCC--------------CeEEEEEe-----CCCe---
Q 021744 141 KLLTQLE----GHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCAS--------------GQCAGVIN-----LGGE--- 193 (308)
Q Consensus 141 ~~~~~~~----~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~--------------~~~~~~~~-----~~~~--- 193 (308)
+..+.+. -.+..|+++.|-|. ...++.+-.+|.+.++|.+- +....... ...+
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~ 285 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR 285 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce
Confidence 2222111 13478999999884 46677888899999997642 11111110 1122
Q ss_pred -------eE--EEEcCCCEEEE-EcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCC
Q 021744 194 -------VG--CMISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (308)
Q Consensus 194 -------v~--~~~~~~~~l~~-~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~ 260 (308)
+. ++++||++||+ +.||.++|||..+.+++ .++..-+...|++|+|| ++++|++|.-|.||.+...
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er- 364 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER- 364 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-
Confidence 21 34579999995 55999999999998887 55556678999999999 9999999999999999997
Q ss_pred cccccceeccccCCCeEE-EEec
Q 021744 261 NCFEPAASLKVHTDSNRA-HFSR 282 (308)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~-~~s~ 282 (308)
+.+..-++|..+|+. +|.|
T Consensus 365 ---RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 365 ---RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ---eEEEeccccccceeeEeecc
Confidence 788888999999999 9985
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.30 E-value=1.6e-09 Score=87.24 Aligned_cols=245 Identities=9% Similarity=0.018 Sum_probs=152.2
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCcccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
-.+.....|+.|.+|+...-+ +-|. ...|..+- .++|||||+. .+...|-.|.||.+.+.+.. .
T Consensus 62 ~ilC~~yk~~~vqvwsl~Qpe-w~ck----------Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~ 128 (447)
T KOG4497|consen 62 HILCVAYKDPKVQVWSLVQPE-WYCK----------IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--L 128 (447)
T ss_pred eeeeeeeccceEEEEEeecce-eEEE----------eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--E
Confidence 345556678899999865320 0010 11122223 6899999987 78889999999999765432 2
Q ss_pred cceeeeeeeeeeeecCCceEE-e------------------------------------eCCCeEEEEEcCCCceeeeEe
Q 021744 104 NRAVIKTDILCRNWVQGNCMY-G------------------------------------EKCKFLHSWTVGDGFKLLTQL 146 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~-g------------------------------------~~d~~i~iwd~~~~~~~~~~~ 146 (308)
....+..+...+|.++|.+.+ . -.+..+.+||---. ..+..+
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-ykv~aY 207 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-YKVYAY 207 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-heeeee
Confidence 222333466677788875521 1 12455677775433 222222
Q ss_pred eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEE--------------------------------------
Q 021744 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI-------------------------------------- 188 (308)
Q Consensus 147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~-------------------------------------- 188 (308)
. ..-.+..++|+|.+++|+.|+.|+.+++-+--+-++..++
T Consensus 208 e-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 E-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred e-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 2 2356889999999999999999999987543322211111
Q ss_pred ----------------------e----CCCe-----eEEEEcCCCEEEEEcC---CcEEEEEcCCCceeeeeCCCCCEEE
Q 021744 189 ----------------------N----LGGE-----VGCMISEGPWIFIGVT---NFVKAWNTQTNTDLSLSGPVGQVYA 234 (308)
Q Consensus 189 ----------------------~----~~~~-----v~~~~~~~~~l~~~~d---~~i~~wd~~~~~~~~~~~~~~~v~~ 234 (308)
+ .+.+ ...+++|..++++-.| +.+-+||++..+.........+|..
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pira 366 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRA 366 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeE
Confidence 0 0000 0011245556665444 4789999998887755556778999
Q ss_pred EEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 235 MAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 235 ~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
..|.|. .|+.+.....+++|..... ..+.. ....-.|.. .|..+|..++..+
T Consensus 367 f~WdP~~prL~vctg~srLY~W~psg~----~~V~v-P~~GF~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 367 FEWDPGRPRLVVCTGKSRLYFWAPSGP----RVVGV-PKKGFNIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred EEeCCCCceEEEEcCCceEEEEcCCCc----eEEec-CCCCceeeeEEecCCCcEEEEEc
Confidence 999998 7777777778999987763 33332 223355666 8998998887544
No 237
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.2e-10 Score=97.98 Aligned_cols=240 Identities=10% Similarity=0.036 Sum_probs=167.1
Q ss_pred Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEc
Q 021744 63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTV 136 (308)
Q Consensus 63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~ 136 (308)
.+.+|.+. .+-|+..|.. ++|+.|..|.+||...+++......+|...+....|.|.. ..++.+.||.+++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 44577777 7999999999 9999999999999988888777778888888777787765 4488899999998776
Q ss_pred CCCc--eeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCe--e--EEEE--cC-CCE
Q 021744 137 GDGF--KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN---LGGE--V--GCMI--SE-GPW 203 (308)
Q Consensus 137 ~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~--v--~~~~--~~-~~~ 203 (308)
.... +....+..|.++|..++..|+. ..|.|++.|+.+.-.|++.+.+-..+. .... | ..+. |. ...
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 5331 2234455699999999999976 558999999999999999876554443 2222 2 2222 33 335
Q ss_pred EEEEc-CCcEEEEEcCCCcee-------eee------CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCc------
Q 021744 204 IFIGV-TNFVKAWNTQTNTDL-------SLS------GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN------ 261 (308)
Q Consensus 204 l~~~~-d~~i~~wd~~~~~~~-------~~~------~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~------ 261 (308)
++++. |..+++||.+.-... .+. ...-.|++++|+.+ -++++-.|-.|++|.-.-+..
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 56655 889999998754322 111 22346899999966 555556677899985332211
Q ss_pred c--cccce-eccccCCC--eEE--EEecCCCeEEEee-ceEEEEeecCc
Q 021744 262 C--FEPAA-SLKVHTDS--NRA--HFSRDVTSLLGSV-SFIMFIGQNNK 302 (308)
Q Consensus 262 ~--~~~~~-~~~~~~~~--v~~--~~s~d~~~l~~s~-s~~i~~~~~~~ 302 (308)
. ...+. .+++|.+. |.. -|-|...|++++. ...||+|....
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 0 01222 26677653 444 5778888888555 78899987543
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.8e-09 Score=94.10 Aligned_cols=203 Identities=9% Similarity=0.025 Sum_probs=121.3
Q ss_pred CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC---CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC
Q 021744 87 NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS 162 (308)
Q Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (308)
..|.++|.+..... ....+...+....|+|+|.. ++.+. ...|++||+.++. .. .+....+.+...+|+||+
T Consensus 176 ~~L~~~D~dG~~~~--~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~-~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQNAQ--SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RR-VVANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCCCCCce--EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EE-EeecCCCCccceEECCCC
Confidence 45677776432211 12233445777899999966 44432 3469999998873 32 333344566789999999
Q ss_pred CEEE-EeeCCCcEEEEe--CCCCeEEEEEe-CCCee--EEEEcCCCEEEEEc--CCcEEEE--EcCCCceeeeeCCCCCE
Q 021744 163 DKLY-SGSKDETVRVWD--CASGQCAGVIN-LGGEV--GCMISEGPWIFIGV--TNFVKAW--NTQTNTDLSLSGPVGQV 232 (308)
Q Consensus 163 ~~l~-s~s~dg~v~~wd--~~~~~~~~~~~-~~~~v--~~~~~~~~~l~~~~--d~~i~~w--d~~~~~~~~~~~~~~~v 232 (308)
+.|+ +.+.++...+|. +..++ ...+. +.... ..++++++.|+..+ ++...+| ++.+++...+.......
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~ 330 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYN 330 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCc
Confidence 8876 567788766664 44444 33333 22221 24578999877443 3444555 55565544333233334
Q ss_pred EEEEEeCC--EEEEEcCCC---eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeec
Q 021744 233 YAMAVGND--LLFAGTQDG---AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQN 300 (308)
Q Consensus 233 ~~~~~~~~--~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~ 300 (308)
....|+|+ +++..+.++ .|.+||+.++.. ..+... ..... .|+|||+.|+.+. ...++....
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-----~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-----TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-----EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 56789998 666555443 699999987632 223222 22345 9999999988554 334555543
No 239
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=5.5e-09 Score=83.69 Aligned_cols=169 Identities=16% Similarity=0.177 Sum_probs=117.5
Q ss_pred CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc--ccceEEEEEeCCCCE
Q 021744 87 NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH--QKVVSGITLPSGSDK 164 (308)
Q Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~ 164 (308)
+.|.|||=...+.+ ........+..+.+..+- +..-..+.|+||...+.-+.++.+... .....+++-..+..+
T Consensus 75 NkviIWDD~k~~~i--~el~f~~~I~~V~l~r~r--iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCI--IELSFNSEIKAVKLRRDR--IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEE--EEEEeccceeeEEEcCCe--EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 57999994333222 344455567777776653 333456899999988543566666532 233333333333344
Q ss_pred EE-EeeCCCcEEEEeCCCCeE---EEEEeCCCeeEEEE--cCCCEEEEEc-CC-cEEEEEcCCCcee-eeeC--CCCCEE
Q 021744 165 LY-SGSKDETVRVWDCASGQC---AGVINLGGEVGCMI--SEGPWIFIGV-TN-FVKAWNTQTNTDL-SLSG--PVGQVY 233 (308)
Q Consensus 165 l~-s~s~dg~v~~wd~~~~~~---~~~~~~~~~v~~~~--~~~~~l~~~~-d~-~i~~wd~~~~~~~-~~~~--~~~~v~ 233 (308)
|+ -|-.-|.|.+-|+...+. ...-.|...+.|+. .+|..+|+++ .| -|++||..+++.+ .+.. ....|.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 43 344568999999987655 33344999999984 6799999887 66 5899999999887 4442 345799
Q ss_pred EEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744 234 AMAVGND--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 234 ~~~~~~~--~l~~g~~dg~i~iwd~~~~ 259 (308)
+|+|||+ +|+++|+.|+++||.++..
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999 9999999999999998864
No 240
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=1.9e-09 Score=87.95 Aligned_cols=187 Identities=12% Similarity=0.089 Sum_probs=135.5
Q ss_pred eeeecCCceE-EeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC--CcEEEEeCCCCeEEEEEeC
Q 021744 114 CRNWVQGNCM-YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD--ETVRVWDCASGQCAGVINL 190 (308)
Q Consensus 114 ~~~~~~~~~~-~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d--g~v~~wd~~~~~~~~~~~~ 190 (308)
..|..+..++ .|+.|| .++|....-.+ ..........|..+-|+. .+++..+.+ +.+++.+++.+..+..+..
T Consensus 11 ~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f 86 (391)
T KOG2110|consen 11 IGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFF 86 (391)
T ss_pred eeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEec
Confidence 3355555554 455555 46777665422 111122234455666664 455555544 3599999999999999999
Q ss_pred CCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee-eee---CCCCCEEEEEEeCC--EEEE--EcCCCeEEEEEcCCCCcc
Q 021744 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLS---GPVGQVYAMAVGND--LLFA--GTQDGAILAWKFNVTTNC 262 (308)
Q Consensus 191 ~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~---~~~~~v~~~~~~~~--~l~~--g~~dg~i~iwd~~~~~~~ 262 (308)
+.++.++--+.+.|++.-...|++||+++.+++ ++. .+...+.++++++. +++- ....|.|.+||+.+-
T Consensus 87 pt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--- 163 (391)
T KOG2110|consen 87 PTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--- 163 (391)
T ss_pred CCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc---
Confidence 999999988888888888777999999999887 332 34455666666665 6664 345789999999985
Q ss_pred cccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecCceeEEeC
Q 021744 263 FEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNNKGVVCYR 308 (308)
Q Consensus 263 ~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~~~~~~~ 308 (308)
+++..+..|.+.+.+ +|+++|.+|+++. -+.+|...+.+.+.=||
T Consensus 164 -~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 164 -QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred -eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 889999999999999 9999999999666 46667777888887776
No 241
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.26 E-value=7.4e-12 Score=111.36 Aligned_cols=180 Identities=13% Similarity=0.228 Sum_probs=134.7
Q ss_pred cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744 104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~ 182 (308)
+.+|...|.|+.|--.|.+ ++|+.|..++||.+.+. .++....||.+.|+.++.+.+..+++++|.|..|++|.+.++
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 3567777888888888876 89999999999999998 899999999999999999998889999999999999999999
Q ss_pred eEEEEEe-CCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceee------ee-------------------C------CCC
Q 021744 183 QCAGVIN-LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS------LS-------------------G------PVG 230 (308)
Q Consensus 183 ~~~~~~~-~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~------~~-------------------~------~~~ 230 (308)
.++..+. |.+.++++...... .++.||++++||.+-..... +. + ...
T Consensus 265 ~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~ 343 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNH 343 (1113)
T ss_pred chHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccc
Confidence 9999887 88889887422211 34459999999987211000 00 0 000
Q ss_pred CEEEEEEeCC-------------EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744 231 QVYAMAVGND-------------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG 289 (308)
Q Consensus 231 ~v~~~~~~~~-------------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~ 289 (308)
....+++... +.+++-.+-.+.+|++.++ .+.+.+.+|...+.. .++|-...++-
T Consensus 344 e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g----~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 344 EFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG----QLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred hhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc----hhhhhhcccccceeeeeecCCCcHhhh
Confidence 1111222211 3344445567888998887 777888899999998 99998777763
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=9e-10 Score=89.60 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=125.2
Q ss_pred eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee-CcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCC----Ce
Q 021744 111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCAS----GQ 183 (308)
Q Consensus 111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~----~~ 183 (308)
+..+++++.-.+ +++..|-.|++|+-... . ...++ ..+..|++++|-|.+ +.|+.|... -|.+|.... +.
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst-~-pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSST-C-PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR 177 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCC-C-CceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence 555666665444 88999999999997764 2 22233 245789999999965 456666664 599997642 11
Q ss_pred --------EEEEEeC--CCeeEEE-E-cCCCEEEEEc--CCcEEEEEcCCCceeeee-CCCCCEEEEEEeCC--EEEEEc
Q 021744 184 --------CAGVINL--GGEVGCM-I-SEGPWIFIGV--TNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGND--LLFAGT 246 (308)
Q Consensus 184 --------~~~~~~~--~~~v~~~-~-~~~~~l~~~~--d~~i~~wd~~~~~~~~~~-~~~~~v~~~~~~~~--~l~~g~ 246 (308)
+.+.+++ ..+++.+ + +|+..+++++ +..|.+||..+++.+.+. -..+.+.-+.|||| +|++++
T Consensus 178 ~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred ccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 1222332 3456666 3 6788888765 779999999999888554 34567888999999 899999
Q ss_pred CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE--eeceEEEEee
Q 021744 247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG--SVSFIMFIGQ 299 (308)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~--s~s~~i~~~~ 299 (308)
-|+..++|..... +...+ ..-..+.|.. .|+|+|++|+- +++-.+|...
T Consensus 258 ~davfrlw~e~q~---wt~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 258 CDAVFRLWQENQS---WTKER-WILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred ccceeeeehhccc---ceecc-eeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 9999999976543 12222 2223347877 99999999873 3366777654
No 243
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.23 E-value=1.2e-09 Score=101.28 Aligned_cols=196 Identities=10% Similarity=0.066 Sum_probs=128.3
Q ss_pred cccccc--eeEEec-CCCe-eeccCCCcEEEEECCCCCCccc----ccce--eeeeeeeeeeecCCce-EEeeCCCeEEE
Q 021744 65 TANGAA--AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKNSNI----NNRA--VIKTDILCRNWVQGNC-MYGEKCKFLHS 133 (308)
Q Consensus 65 ~gh~~~--~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~g~~d~~i~i 133 (308)
..|... .++.++ ++.+ +|||.||+||+|+...-.-... .... ....+..+...+.+.. +.++.||.|++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 345555 566665 4588 9999999999999943211100 1111 2233666666676654 88899999999
Q ss_pred EEcCCCc------eeeeEeeCc-ccceEEE-EEeC-CCC-EEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEE--E
Q 021744 134 WTVGDGF------KLLTQLEGH-QKVVSGI-TLPS-GSD-KLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCM--I 198 (308)
Q Consensus 134 wd~~~~~------~~~~~~~~h-~~~v~~~-~~~~-~~~-~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~--~ 198 (308)
.++.-.. ...+....+ .+.+.+| ++.. ... .++.+..-+.|..||++.....+.++ ..+.++++ .
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec
Confidence 9987521 111111222 2333333 3433 234 67888888999999999887777766 34556655 4
Q ss_pred cCCCEEEEEc-CCcEEEEEcCCCcee-e-eeCCCCCEEEEEEeCC------EEEEEc-CCCeEEEEEcCCCC
Q 021744 199 SEGPWIFIGV-TNFVKAWNTQTNTDL-S-LSGPVGQVYAMAVGND------LLFAGT-QDGAILAWKFNVTT 260 (308)
Q Consensus 199 ~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~~~~~~v~~~~~~~~------~l~~g~-~dg~i~iwd~~~~~ 260 (308)
+.+.+++.|. .|.+.+||++-+.++ . ...+..++..+..+|- .+.+++ ..+.|.+|++.++.
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 6688999987 889999999998877 2 2334467777777653 444444 67889999999873
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=4e-09 Score=90.91 Aligned_cols=170 Identities=13% Similarity=0.151 Sum_probs=130.0
Q ss_pred EEeeCCCeEEEEEcCCCceeeeEeeCc---ccceEEEEE--------------------eCCCCEEEEeeCCCcEEEEeC
Q 021744 123 MYGEKCKFLHSWTVGDGFKLLTQLEGH---QKVVSGITL--------------------PSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h---~~~v~~~~~--------------------~~~~~~l~s~s~dg~v~~wd~ 179 (308)
+....||.+++|+...+ +....+... .+..++..| +.+-..++-|...|.|.+|+.
T Consensus 9 A~~~~~g~l~iw~t~~~-~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~ 87 (541)
T KOG4547|consen 9 ALSTGDGRLRIWDTAKN-QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV 87 (541)
T ss_pred eecCCCCeEEEEEccCc-eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence 67788999999999887 444444321 122223332 123346888899999999999
Q ss_pred CCCeEEEEEe---CCCeeEEEE-cC-CCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCe
Q 021744 180 ASGQCAGVIN---LGGEVGCMI-SE-GPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGA 250 (308)
Q Consensus 180 ~~~~~~~~~~---~~~~v~~~~-~~-~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~ 250 (308)
..++.-..+. |.+.+.++. .+ -..|.+++ |..+..|+......+ ...+....+.+++++|| .+++++ +.
T Consensus 88 ~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ 165 (541)
T KOG4547|consen 88 AGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQ 165 (541)
T ss_pred cCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ce
Confidence 9999988887 777888775 33 33455554 999999999998888 67777888999999999 887776 68
Q ss_pred EEEEEcCCCCcccccceeccccCCCeEE-EEecC-----CCeEEEee----ceEEEEee
Q 021744 251 ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD-----VTSLLGSV----SFIMFIGQ 299 (308)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d-----~~~l~~s~----s~~i~~~~ 299 (308)
|++||++++ +.+.+|.+|.++|++ .|.-+ |.+++++. .+.+|...
T Consensus 166 ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 166 IKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 999999997 889999999999999 99887 78888665 44455544
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=5.5e-09 Score=84.62 Aligned_cols=275 Identities=7% Similarity=0.016 Sum_probs=162.7
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccC---CCCCCcccc---ccc-eeEEecCCCe---eeccCCCcEEEEEC
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHREL---PLPPAATAN---GAA-AKRFANNTWG---RNNNFNNHSNNYRA 94 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~---~~~~~~~gh---~~~-~i~~s~~g~~---~s~~~d~~i~vwd~ 94 (308)
.|.++|||..+|.|-++.-....+....+....+ |....+..- +.. .++|.++++. ...+.|++|++|.+
T Consensus 36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi 115 (433)
T KOG1354|consen 36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKI 115 (433)
T ss_pred ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeee
Confidence 4678999999999999864433211111111111 111111111 111 6888887776 78889999999988
Q ss_pred CCCCCc------------------ccc-----------------cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCC
Q 021744 95 GNSKNS------------------NIN-----------------NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDG 139 (308)
Q Consensus 95 ~~~~~~------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 139 (308)
...... ..+ ...|.-.+.++.+..+........|-.|.+|+++-.
T Consensus 116 ~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~ 195 (433)
T KOG1354|consen 116 RERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEII 195 (433)
T ss_pred eccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeecccccc
Confidence 321100 000 012233355666666666666778899999998743
Q ss_pred cee--eeEeeCc-----ccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEE----EEEe-CCC---------ee---
Q 021744 140 FKL--LTQLEGH-----QKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCA----GVIN-LGG---------EV--- 194 (308)
Q Consensus 140 ~~~--~~~~~~h-----~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~----~~~~-~~~---------~v--- 194 (308)
.+. +-.++.+ +.-|++..|+|.. +.++-.+..|+|++-|++....- +.+. ... .+
T Consensus 196 d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI 275 (433)
T KOG1354|consen 196 DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI 275 (433)
T ss_pred CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence 221 2223332 3568899999954 66777888899999999953211 1121 111 12
Q ss_pred EEE--EcCCCEEEEEcCCcEEEEEcCCC--ceeeeeCCC------------CC---EEEEEEeCC--EEEEEcCCCeEEE
Q 021744 195 GCM--ISEGPWIFIGVTNFVKAWNTQTN--TDLSLSGPV------------GQ---VYAMAVGND--LLFAGTQDGAILA 253 (308)
Q Consensus 195 ~~~--~~~~~~l~~~~d~~i~~wd~~~~--~~~~~~~~~------------~~---v~~~~~~~~--~l~~g~~dg~i~i 253 (308)
..+ +.+|+++++-.--+|++||+... ...+...|. +. -..++|+.+ ++++|+....+++
T Consensus 276 SDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frv 355 (433)
T KOG1354|consen 276 SDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRV 355 (433)
T ss_pred hceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEE
Confidence 222 45688888777789999999543 222444442 12 256788888 9999999999999
Q ss_pred EEcCCCCccc----------------ccceecc-cc-------------CCCeEE-EEecCCCeEEEeeceEEEEee
Q 021744 254 WKFNVTTNCF----------------EPAASLK-VH-------------TDSNRA-HFSRDVTSLLGSVSFIMFIGQ 299 (308)
Q Consensus 254 wd~~~~~~~~----------------~~~~~~~-~~-------------~~~v~~-~~s~d~~~l~~s~s~~i~~~~ 299 (308)
|++..+.... ++-.... +. ..-+.. +|+|....++.++...+|+.+
T Consensus 356 f~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 356 FNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIFQ 432 (433)
T ss_pred ecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEEec
Confidence 9965443100 0000000 00 112445 889998888888877888765
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.3e-08 Score=90.18 Aligned_cols=205 Identities=15% Similarity=0.033 Sum_probs=124.1
Q ss_pred cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC---CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC
Q 021744 88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD 163 (308)
Q Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (308)
.|.++|.+..... ....+...+....|+|+|.. ++.+. ...|.+|++.++. . ..+....+.+...+|+||++
T Consensus 180 ~l~~~d~~g~~~~--~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~-~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARAV--TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-R-EQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCCce--EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-E-EEccCCCCCcCCeEECCCCC
Confidence 4777787644321 22233344677889999976 44432 2469999998873 2 23333344556789999998
Q ss_pred EEE-EeeCCC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeeeCCCCCEEE
Q 021744 164 KLY-SGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVYA 234 (308)
Q Consensus 164 ~l~-s~s~dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~~~~~~v~~ 234 (308)
.|+ +.+.++ .|.+||+.+++........... ..++++++.++..+ ++ .|+++|+.+++...+.........
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~ 335 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR 335 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence 876 555555 5888899987654433332222 23467888776443 33 688889888876544322233445
Q ss_pred EEEeCC--EEEEEc-CCC--eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecCc
Q 021744 235 MAVGND--LLFAGT-QDG--AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNNK 302 (308)
Q Consensus 235 ~~~~~~--~l~~g~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~ 302 (308)
..|+|+ .++..+ .++ .|.+||+.++.. ..+.. ...... .|+|||+.++.+. ...|++...+.
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-----EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 789998 554444 333 578889887532 22221 112224 8999999998544 34566665443
No 247
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.19 E-value=5.2e-08 Score=84.84 Aligned_cols=217 Identities=14% Similarity=0.059 Sum_probs=131.9
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
+..++.++.++.+.-+|..++.. +.. ........+ ... .++.. +.++.++.+..+|.++++..-...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~-----~W~-~~~~~~~~~----~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR-----LWR-VDLDERLSG----GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE-----eee-ecCCCCccc----ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeec
Confidence 56788888899999999887721 000 011111110 122 23555 778889999999998887543221
Q ss_pred ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccce-----EEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744 105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV-----SGITLPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
. ...+.......++..+.+..++.++.+|.+++ +.+.++......+ ....+. +..++.+..++.+..+|+
T Consensus 133 ~--~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG-~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 133 L--SSEVLSPPLVANGLVVVRTNDGRLTALDAATG-ERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDL 207 (377)
T ss_pred c--CceeecCCEEECCEEEEECCCCeEEEEEcCCC-ceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEc
Confidence 1 11111111122445567778999999999998 5666554332211 111222 246788888999999999
Q ss_pred CCCeEEEEEeCCCe-----------e-EE-EEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCCEEEEEc
Q 021744 180 ASGQCAGVINLGGE-----------V-GC-MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGT 246 (308)
Q Consensus 180 ~~~~~~~~~~~~~~-----------v-~~-~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~ 246 (308)
++++.+.......+ + .. +..++..++.+.++.+..||.++++........ .........+.++.++
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-SYQGPAVDDNRLYVTD 286 (377)
T ss_pred cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-CccCceEeCCEEEEEC
Confidence 99988766542111 0 01 122343444455999999999999877322222 2233444555777788
Q ss_pred CCCeEEEEEcCCCC
Q 021744 247 QDGAILAWKFNVTT 260 (308)
Q Consensus 247 ~dg~i~iwd~~~~~ 260 (308)
.+|.+..+|..+++
T Consensus 287 ~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 287 ADGVVVALDRRSGS 300 (377)
T ss_pred CCCeEEEEECCCCc
Confidence 99999999998873
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.19 E-value=1.7e-07 Score=80.47 Aligned_cols=232 Identities=13% Similarity=0.097 Sum_probs=140.7
Q ss_pred eeEEecCCCe-eecc----CCCcEEEEECCCC--CCcccccce-eeeeeeeeeeecCCceE--EeeCCCeEEEEEcCCCc
Q 021744 71 AKRFANNTWG-RNNN----FNNHSNNYRAGNS--KNSNINNRA-VIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGDGF 140 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~----~d~~i~vwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~--~g~~d~~i~iwd~~~~~ 140 (308)
-++++|+++. .+.. .++.|..|++... +........ .......+.+.+++..+ +--.+|.|.++++....
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 5899999998 3333 3678999988653 222111111 12225567788888773 33368999999998631
Q ss_pred eeee---Eee----------CcccceEEEEEeCCCCEEEEeeC-CCcEEEEeCCCCe--EE--EEEe--CC-Ce-eEEEE
Q 021744 141 KLLT---QLE----------GHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQ--CA--GVIN--LG-GE-VGCMI 198 (308)
Q Consensus 141 ~~~~---~~~----------~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~~~--~~--~~~~--~~-~~-v~~~~ 198 (308)
.+.. .+. .......++.++|++++++.... ...|.+|++.... .. ..+. .. ++ -..+.
T Consensus 121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~ 200 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS 200 (345)
T ss_dssp EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-
T ss_pred ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc
Confidence 2222 121 11245678999999998876543 4579999987654 32 2233 22 22 33456
Q ss_pred cCCCEEEEEc--CCcEEEEEcC--CCcee---eeeC----C--CCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcc
Q 021744 199 SEGPWIFIGV--TNFVKAWNTQ--TNTDL---SLSG----P--VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC 262 (308)
Q Consensus 199 ~~~~~l~~~~--d~~i~~wd~~--~~~~~---~~~~----~--~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~ 262 (308)
++++++++.. +++|.++++. ++... .... . ......|.++|| ++++....+.|.+|++......
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 8888887544 8899999988 44322 1111 1 126889999999 4555556789999999543222
Q ss_pred cccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecCc
Q 021744 263 FEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNNK 302 (308)
Q Consensus 263 ~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~ 302 (308)
++.+..+.......+. +++|+|++|+++. .+.+|......
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 3555555554555666 9999999999877 55555554333
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.16 E-value=4.7e-09 Score=84.94 Aligned_cols=235 Identities=14% Similarity=0.175 Sum_probs=156.7
Q ss_pred CCccccccc---eeEEecCCCeeeccCCCcEEEEEC-CCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744 62 PAATANGAA---AKRFANNTWGRNNNFNNHSNNYRA-GNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTV 136 (308)
Q Consensus 62 ~~~~gh~~~---~i~~s~~g~~~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~ 136 (308)
..+.||... .+-...+...++.+.|.++|||-- +.+|.-..........+.+..+.+.... +.|-..|++.-+.+
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 344567665 233333333499999999999954 4455442222223334666677766655 66778889888876
Q ss_pred CCCc---eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcE
Q 021744 137 GDGF---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFV 212 (308)
Q Consensus 137 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i 212 (308)
.... ...+.+..|...+..+-|+...+++++.+.|..+.-.-.+.+..+..+.......+.-.+-.+...|. .+.|
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv 177 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQI 177 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccce
Confidence 5331 44666778999999999998889999999999888777777776655543222222211111444565 5665
Q ss_pred EEEEcCC--Ccee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCe
Q 021744 213 KAWNTQT--NTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS 286 (308)
Q Consensus 213 ~~wd~~~--~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~ 286 (308)
.+-.+.. -.++ ++.+|.+.+.+++|.|. .+++|..|..+.+||+...+ ....++.+|...|.. .+-+--+.
T Consensus 178 t~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~---g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK---GTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred EEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc---ceeeeeccchhhhhhhhhhhhhee
Confidence 5444332 2333 78999999999999988 99999999999999998753 445677788888877 66665555
Q ss_pred EEEee-ceEEEEee
Q 021744 287 LLGSV-SFIMFIGQ 299 (308)
Q Consensus 287 l~~s~-s~~i~~~~ 299 (308)
|.+.. +..|-.++
T Consensus 255 l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 255 LISCGEDGGIVVWN 268 (404)
T ss_pred eeeccCCCeEEEEe
Confidence 55444 44444444
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=2e-10 Score=109.93 Aligned_cols=176 Identities=12% Similarity=0.059 Sum_probs=127.1
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCcc-ccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAAT-ANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
..+.+||+.|+.+++|..+.+ ++...+-. |.... .+.|+.+|+. ..+..||.+.+|.+... +..
T Consensus 2220 ~~~Yltgs~dgsv~~~~w~~~-----------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk--~~~ 2286 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHG-----------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK--PYT 2286 (2439)
T ss_pred CceEEecCCCceEEEEeccCC-----------CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc--cee
Confidence 467899999999999998877 22222111 22111 6899999999 88899999999998632 222
Q ss_pred ccceeeeeeeeeeeecCCceE--EeeCCCeEEEEEcCC--CceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744 103 NNRAVIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~--~g~~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd 178 (308)
..+-|.+......|-.....- ..+.++.+.+||..- ....+. ..|.+.++++++-|..+.|++|+.+|.|++||
T Consensus 2287 s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred ccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence 445566655555555433221 234678999999642 223344 78999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744 179 CASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL 223 (308)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~ 223 (308)
++..+.+..++. + ....+++.|+ .|.++||++.....+
T Consensus 2365 ~rqrql~h~~~~------~-~~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA------L-DTREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred hHHHHHHHHhhh------h-hhhheeeccCcccceEEEEccccchh
Confidence 998887776663 1 2455677766 899999999876544
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1e-08 Score=90.29 Aligned_cols=207 Identities=12% Similarity=0.072 Sum_probs=120.1
Q ss_pred eeEEecCCCe--e--eccCCC--cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee-C----CCeEEEEEcCC
Q 021744 71 AKRFANNTWG--R--NNNFNN--HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE-K----CKFLHSWTVGD 138 (308)
Q Consensus 71 ~i~~s~~g~~--~--s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~----d~~i~iwd~~~ 138 (308)
.-+|+|||+. + +...++ .|.+.++.+++.. .............|+|+|.. +..+ . +-.+.+|++..
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCce--EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 4599999974 2 444444 4666677666432 22222333455789999965 3322 2 33445577664
Q ss_pred C--ceeeeEeeCcccceEEEEEeCCCCEEEEee-CCCcEEEE--eCCC-CeEEEEEe-CCCe--eEEEEcCCCEEEEE-c
Q 021744 139 G--FKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVW--DCAS-GQCAGVIN-LGGE--VGCMISEGPWIFIG-V 208 (308)
Q Consensus 139 ~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~v~~w--d~~~-~~~~~~~~-~~~~--v~~~~~~~~~l~~~-~ 208 (308)
+ .+..+...++.......+|+|||+.|+..+ .+|...+| ++.. +.....+. .... ...++|+++.|+.. .
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 2 122233333334456789999999877655 46655555 4432 22233333 2222 23457899988754 3
Q ss_pred -C--CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEE-EEcC--CCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744 209 -T--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF-AGTQ--DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H 279 (308)
Q Consensus 209 -d--~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~ 279 (308)
+ ..|.+||+.+++...+......+....|+|| .|+ ++.. ...|+++|+..++ ...+......+.. +
T Consensus 347 ~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~-----~~~Lt~~~g~~~~p~ 421 (428)
T PRK01029 347 IKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK-----TRKIVIGSGEKRFPS 421 (428)
T ss_pred CCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-----EEEeecCCCcccCce
Confidence 2 3799999999988766544456778999998 443 4433 3568888888753 2223333444556 8
Q ss_pred EecCC
Q 021744 280 FSRDV 284 (308)
Q Consensus 280 ~s~d~ 284 (308)
|+|-.
T Consensus 422 Ws~~~ 426 (428)
T PRK01029 422 WGAFP 426 (428)
T ss_pred ecCCC
Confidence 87753
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1e-08 Score=90.85 Aligned_cols=220 Identities=11% Similarity=0.027 Sum_probs=124.4
Q ss_pred cCCCCceeEEEeecC----CCCCCCCCCceEEecC-C--CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEec
Q 021744 4 DAHGGNKRVFHRLGG----GGGDGGGGGLSTADTR-Q--KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFAN 76 (308)
Q Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~s~-d--~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~ 76 (308)
|.+|.|.|+..+... +.-..+ |..|+..+. + ..|++||..++.. . ... ...++.. ..+|+|
T Consensus 204 d~dG~~~~~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~---~------~lt-~~~g~~~-~~~wSP 271 (448)
T PRK04792 204 DYDGYNEQMLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVR---E------KVT-SFPGING-APRFSP 271 (448)
T ss_pred eCCCCCceEeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCe---E------Eec-CCCCCcC-CeeECC
Confidence 567888776554432 222222 455555443 3 3688888876611 0 011 1112211 479999
Q ss_pred CCCe--eeccCCCc--EEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee-CC--CeEEEEEcCCCceeeeEeeC
Q 021744 77 NTWG--RNNNFNNH--SNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE-KC--KFLHSWTVGDGFKLLTQLEG 148 (308)
Q Consensus 77 ~g~~--~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~d--~~i~iwd~~~~~~~~~~~~~ 148 (308)
||+. ++.+.++. |.++|+++++.. ....+........|+|++.. +..+ .+ ..|+++|+.++ +.. .+..
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~--~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~~~-~Lt~ 347 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT--RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-KVS-RLTF 347 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE--ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-CEE-EEec
Confidence 9997 45566665 677788766432 12222223456789999965 3333 33 35677777776 332 2221
Q ss_pred cccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeC-CCeeEEEEcCCCEEEEEc--CC--cEEEEEcCCC
Q 021744 149 HQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINL-GGEVGCMISEGPWIFIGV--TN--FVKAWNTQTN 220 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~--d~--~i~~wd~~~~ 220 (308)
+.......+|+||+++++..+. ++ .|.++|+.+++....... ...-..++++++.|+... ++ .+.+++....
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2223345789999998876655 33 456678887764322221 111225678999877433 33 4778887655
Q ss_pred ceeeeeCCCCCEEEEEEeC
Q 021744 221 TDLSLSGPVGQVYAMAVGN 239 (308)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~ 239 (308)
....+..+.+.+...+|+|
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 5556665666677777776
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=1.6e-08 Score=81.88 Aligned_cols=94 Identities=19% Similarity=0.369 Sum_probs=66.8
Q ss_pred EeeCCCeEEEEEcC--CCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe--EEEEEeCCCeeEEEE-
Q 021744 124 YGEKCKFLHSWTVG--DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLGGEVGCMI- 198 (308)
Q Consensus 124 ~g~~d~~i~iwd~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~--~~~~~~~~~~v~~~~- 198 (308)
.|...|.|.+-.+. .- .++.++.+|.+.+.+++|.+....|.+|..|..+.+||+--.+ ......+...+..++
T Consensus 170 vGd~~gqvt~lr~~~~~~-~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGC-QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEeecCC-ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 34455555544332 23 6688899999999999999999999999999999999997543 333333666666553
Q ss_pred -cCCCEEEE-EcCCcEEEEEcC
Q 021744 199 -SEGPWIFI-GVTNFVKAWNTQ 218 (308)
Q Consensus 199 -~~~~~l~~-~~d~~i~~wd~~ 218 (308)
+--+.+++ +.|+.|.+||++
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhheeeeeccCCCeEEEEecc
Confidence 33444554 459999999875
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=3.7e-10 Score=108.14 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=137.4
Q ss_pred eEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744 72 KRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGH 149 (308)
Q Consensus 72 i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h 149 (308)
+.-+|.-.+ +||+.||.|++|....++++......-...+..+.|+..|.. ..+..||.+.+|.+.. ++....+.|
T Consensus 2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~~~s~qch 2291 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KPYTSWQCH 2291 (2439)
T ss_pred ecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cceeccccC
Confidence 344577777 999999999999998888776555444466888999988865 7778899999999873 567778889
Q ss_pred ccceEEEEEeCCCCEEEEee---CCCcEEEEeCCCCeEEEE--EeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc
Q 021744 150 QKVVSGITLPSGSDKLYSGS---KDETVRVWDCASGQCAGV--INLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT 221 (308)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~s---~dg~v~~wd~~~~~~~~~--~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~ 221 (308)
......+.|-. ..+++++ .++.+.+||..-...... -.|.+..+++ .|..+++++|+ +|.|++||++..+
T Consensus 2292 nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2292 NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred Cccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 99999998875 5666654 478999999764222211 2266666665 58888888888 9999999999877
Q ss_pred ee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceecc
Q 021744 222 DL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLK 270 (308)
Q Consensus 222 ~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (308)
.. .++. +. ..++|++|+..|.++||++... .++.++.
T Consensus 2370 l~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~----~ll~~~p 2407 (2439)
T KOG1064|consen 2370 LRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEF----GLLHTFP 2407 (2439)
T ss_pred HHHHhhh-------hh-hhheeeccCcccceEEEEcccc----chhhcCc
Confidence 76 3332 22 2239999999999999999985 5555554
No 255
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.09 E-value=1.9e-08 Score=81.10 Aligned_cols=270 Identities=11% Similarity=0.041 Sum_probs=158.9
Q ss_pred EEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcE
Q 021744 12 VFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHS 89 (308)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i 89 (308)
+|..++..-..|-.|+++|+.+.- .+-+=|..+-+ +|.-..... ... -+.|+.|.-+ .....|+.|
T Consensus 6 ~fk~~~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq------~~qlf~cld-ki~----yieW~ads~~ilC~~yk~~~v 73 (447)
T KOG4497|consen 6 LFKSLNPFCSFSPCGNYIASLSRY-RLVIRDSETLQ------LHQLFLCLD-KIV----YIEWKADSCHILCVAYKDPKV 73 (447)
T ss_pred HHHhcCCceeECCCCCeeeeeeee-EEEEeccchhh------HHHHHHHHH-Hhh----heeeeccceeeeeeeeccceE
Confidence 455666666667778899988765 55555555431 000000000 000 3677777777 556678899
Q ss_pred EEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEE
Q 021744 90 NNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS 167 (308)
Q Consensus 90 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 167 (308)
.+|++...+.-... ..-.......+++|+|+. .+..-+-.|.+|.+.+.+ . .-++--+..+..++|+||+++.+.
T Consensus 74 qvwsl~Qpew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~-~~~~~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 74 QVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-G-YLLPHPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred EEEEeecceeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce-e-EEecccccCceeEEECCCCceeee
Confidence 99999765443211 112233778899999954 667789999999998863 2 223323455678899999988877
Q ss_pred eeCC------------------------------------CcEEEEeCCCCeEEEEEeCCCeeEE--EEcCCCEEEEEc-
Q 021744 168 GSKD------------------------------------ETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIGV- 208 (308)
Q Consensus 168 ~s~d------------------------------------g~v~~wd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~- 208 (308)
+++- ..+.+||---.-.+..+.-.--+.. .+|.+++|++|+
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeecc
Confidence 7642 1222333211111111111111222 246699999988
Q ss_pred CCcEEEEEcCCCc----------------------------------------------------------ee---ee--
Q 021744 209 TNFVKAWNTQTNT----------------------------------------------------------DL---SL-- 225 (308)
Q Consensus 209 d~~i~~wd~~~~~----------------------------------------------------------~~---~~-- 225 (308)
|+.+++.+--+-+ .+ .+
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 8877764321100 00 01
Q ss_pred ----eCCCCCEEEEEEeCC-EEEEEcCC---CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE-EeeceEE
Q 021744 226 ----SGPVGQVYAMAVGND-LLFAGTQD---GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSVSFIM 295 (308)
Q Consensus 226 ----~~~~~~v~~~~~~~~-~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~s~~i 295 (308)
......+--++|++| +.++.-.| +.+-+||++.. .+...-....+|+. .|.|....|+ ..+...+
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-----~l~avLiQk~piraf~WdP~~prL~vctg~srL 385 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-----KLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRL 385 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-----hhhhhhhhccceeEEEeCCCCceEEEEcCCceE
Confidence 112235667999999 44444444 45899999984 34444456778888 9999887776 4557788
Q ss_pred EEeecC
Q 021744 296 FIGQNN 301 (308)
Q Consensus 296 ~~~~~~ 301 (308)
|.+.-.
T Consensus 386 Y~W~ps 391 (447)
T KOG4497|consen 386 YFWAPS 391 (447)
T ss_pred EEEcCC
Confidence 887643
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.2e-08 Score=86.40 Aligned_cols=226 Identities=10% Similarity=-0.061 Sum_probs=124.7
Q ss_pred ccCCCCceeEEEeecCC----CCCCCCCC--ceEEecCCC--eEEEeecCCCCCCCCCcccccCCCCCCccccccceeEE
Q 021744 3 FDAHGGNKRVFHRLGGG----GGDGGGGG--LSTADTRQK--VCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRF 74 (308)
Q Consensus 3 ~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~s~s~d~--~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~ 74 (308)
.|.+|+|.|.+.+.+.. .-..|+.. ++.++-.++ .|.+.+...+.. ... ....+... ..+|
T Consensus 170 ~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~---------~~l-t~~~g~~~-~p~w 238 (428)
T PRK01029 170 VDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG---------KKI-LALQGNQL-MPTF 238 (428)
T ss_pred EcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc---------eEe-ecCCCCcc-ceEE
Confidence 36788988877664322 11122222 222443443 455566665511 001 11112211 4799
Q ss_pred ecCCCe-e-eccC----CCcEEEEECCCCC--CcccccceeeeeeeeeeeecCCce-EEee-CCCeEEEE--EcCCCcee
Q 021744 75 ANNTWG-R-NNNF----NNHSNNYRAGNSK--NSNINNRAVIKTDILCRNWVQGNC-MYGE-KCKFLHSW--TVGDGFKL 142 (308)
Q Consensus 75 s~~g~~-~-s~~~----d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~d~~i~iw--d~~~~~~~ 142 (308)
+|||+. + +... |-.+.+|++..+. .................|+|+|.. ++.+ .++...+| ++......
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 999988 4 3332 3334557765431 111011111112345689999975 4443 45654555 44322122
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeCC---CcEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEE-Ec---CCcEE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFI-GV---TNFVK 213 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~-~~---d~~i~ 213 (308)
...+..+...+....|+||++.|+..+.+ ..|.+||+.+++........... ..+.++++.|+. +. ...|.
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 34455455667889999999988766543 36999999988765443322222 234678887773 33 34789
Q ss_pred EEEcCCCceeeeeCCCCCEEEEEEeC
Q 021744 214 AWNTQTNTDLSLSGPVGQVYAMAVGN 239 (308)
Q Consensus 214 ~wd~~~~~~~~~~~~~~~v~~~~~~~ 239 (308)
++|+.+++...+....+.+...+|+|
T Consensus 399 ~vdl~~g~~~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 399 LISLITKKTRKIVIGSGEKRFPSWGA 424 (428)
T ss_pred EEECCCCCEEEeecCCCcccCceecC
Confidence 99999887775555555566677776
No 257
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.07 E-value=3.1e-07 Score=80.46 Aligned_cols=227 Identities=15% Similarity=0.072 Sum_probs=130.9
Q ss_pred CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCccccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
+..++.++.++.+.-+|..+++. +..+ ...+. .. ...+. ++..+.+..++.|..+|.++++.+-...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~-------~~~~~--~s--sP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTK-------VAGEA--LS--RPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCccccc-------CCCce--ec--CCEEE-CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 44566777899999999988831 2111 11100 00 11111 3333666778888989988887543221
Q ss_pred ceeee----eeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCccc-------ceEEEEEeC--CCCEEEEeeCC
Q 021744 105 RAVIK----TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK-------VVSGITLPS--GSDKLYSGSKD 171 (308)
Q Consensus 105 ~~~~~----~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~-------~v~~~~~~~--~~~~l~s~s~d 171 (308)
..... ....-.. ..+..+.+..++.+..+|..++ +.+........ ....+.-+| .+..++.++.+
T Consensus 188 ~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G-~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~ 265 (394)
T PRK11138 188 LDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQG-QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN 265 (394)
T ss_pred CCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCC-hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC
Confidence 11000 0000011 1344566778899999999988 44444321100 011111122 24567778889
Q ss_pred CcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee-eeeCC-CCCEEEEEEeCCEEEEEcCCC
Q 021744 172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGP-VGQVYAMAVGNDLLFAGTQDG 249 (308)
Q Consensus 172 g~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~-~~~v~~~~~~~~~l~~g~~dg 249 (308)
|.+...|..+++.+..............++.+++...++.+..+|..+++.+ ..... .....+..+..+.++.++.+|
T Consensus 266 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G 345 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEG 345 (394)
T ss_pred CeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCC
Confidence 9999999999998877653332222233444444556999999999999876 22211 112333444455888899999
Q ss_pred eEEEEEcCCCCcccccceecc
Q 021744 250 AILAWKFNVTTNCFEPAASLK 270 (308)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~ 270 (308)
.|...|..++ +.+...+
T Consensus 346 ~l~~ld~~tG----~~~~~~~ 362 (394)
T PRK11138 346 YLHWINREDG----RFVAQQK 362 (394)
T ss_pred EEEEEECCCC----CEEEEEE
Confidence 9999999987 4444443
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=1.7e-07 Score=90.91 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=142.2
Q ss_pred CCCCCCceEEecCCCeEEEeecCCCCCCCCCcccc-cCCCC--CC-cccc-ccc-eeEEecCCCe--eeccCCCcEEEEE
Q 021744 22 DGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHR-ELPLP--PA-ATAN-GAA-AKRFANNTWG--RNNNFNNHSNNYR 93 (308)
Q Consensus 22 ~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~-~~~~~--~~-~~gh-~~~-~i~~s~~g~~--~s~~~d~~i~vwd 93 (308)
....+.++++.+..+.|++||.... .. ...-. ..... .+ ..++ ..+ .+++.++++. ++-...+.|+++|
T Consensus 576 d~~~g~lyVaDs~n~rI~v~d~~G~-~i--~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 576 DLLNNRLFISDSNHNRIVVTDLDGN-FI--VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred ECCCCeEEEEECCCCeEEEEeCCCC-EE--EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 3345678888899999999986532 00 00000 00000 00 0000 112 7899998875 5555567899999
Q ss_pred CCCCCCcccc--------cce-------eeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceeeeEeeC--------
Q 021744 94 AGNSKNSNIN--------NRA-------VIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG-------- 148 (308)
Q Consensus 94 ~~~~~~~~~~--------~~~-------~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~-------- 148 (308)
+.++...... ..+ .-.....+++.+ ++.. ++...++.|++||..++. . ..+.+
T Consensus 653 ~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v-~~~~G~G~~~~~~ 730 (1057)
T PLN02919 653 FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-T-RVFSGDGYERNLN 730 (1057)
T ss_pred cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-E-EEEecCCccccCC
Confidence 8655321000 000 011245678888 4444 777788999999988762 2 22211
Q ss_pred -c------ccceEEEEEeCCCCE-EEEeeCCCcEEEEeCCCCeEEEEEe-----------------------CCCeeE-E
Q 021744 149 -H------QKVVSGITLPSGSDK-LYSGSKDETVRVWDCASGQCAGVIN-----------------------LGGEVG-C 196 (308)
Q Consensus 149 -h------~~~v~~~~~~~~~~~-l~s~s~dg~v~~wd~~~~~~~~~~~-----------------------~~~~v~-~ 196 (308)
+ -.....++++|++.. .++-+.++.|++||+.++....... ...+.. +
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 1 123567999999884 4566677999999998765321110 001111 2
Q ss_pred EEcCCCEEEEEc-CCcEEEEEcCCCceeeeeCC--------------CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744 197 MISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGP--------------VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 197 ~~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~--------------~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~ 259 (308)
+.+++.++++-. ++.|++||..++....+.+. -.....++++++ ++++-+.++.|++||+.++
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 346777666655 88999999998876643321 125678999998 7778888999999999886
Q ss_pred C
Q 021744 260 T 260 (308)
Q Consensus 260 ~ 260 (308)
.
T Consensus 891 ~ 891 (1057)
T PLN02919 891 E 891 (1057)
T ss_pred c
Confidence 3
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=6.8e-07 Score=75.61 Aligned_cols=256 Identities=5% Similarity=-0.044 Sum_probs=145.8
Q ss_pred CCceEEecC----CCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eecc---------CCCcEE
Q 021744 26 GGLSTADTR----QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNN---------FNNHSN 90 (308)
Q Consensus 26 ~~~~~s~s~----d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~---------~d~~i~ 90 (308)
...+++-.. .++|.+.|..+. ........|..... .++|||+. ++.+ .+..|.
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~-----------~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~ 80 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAG-----------RVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVE 80 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCC-----------EEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEE
Confidence 344555554 388999998876 11111111211113 49999998 5555 578899
Q ss_pred EEECCCCCCcccccceee------eeeeeeeeecCCceEE--eeC-CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC
Q 021744 91 NYRAGNSKNSNINNRAVI------KTDILCRNWVQGNCMY--GEK-CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG 161 (308)
Q Consensus 91 vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--g~~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~ 161 (308)
+||..+.+.......+.+ .......++++|+.+. --. +..|-+.|+.++ +.+.++.- .+...-+..+++
T Consensus 81 v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~-kvv~ei~v-p~~~~vy~t~e~ 158 (352)
T TIGR02658 81 VIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK-AFVRMMDV-PDCYHIFPTAND 158 (352)
T ss_pred EEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC-cEEEEEeC-CCCcEEEEecCC
Confidence 999998876543332211 1245778899997633 323 799999999998 67776653 222222222222
Q ss_pred CCEEEEeeCCCcEEEEeCCC-CeEE-EEEe--CC-------CeeEEEEc-CCCEEEEEcCCcEEEEEcCCCce-----ee
Q 021744 162 SDKLYSGSKDETVRVWDCAS-GQCA-GVIN--LG-------GEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTD-----LS 224 (308)
Q Consensus 162 ~~~l~s~s~dg~v~~wd~~~-~~~~-~~~~--~~-------~~v~~~~~-~~~~l~~~~d~~i~~wd~~~~~~-----~~ 224 (308)
..+ .-+.||......+.+ ++.. .... +. .+ .+++ +++++.++..|+|.+.|+...+. ..
T Consensus 159 -~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 159 -TFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred -ccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ceEcCCCcEEEEecCCeEEEEecCCCcceecceee
Confidence 112 222444444433332 2211 1111 11 11 2244 78999988889999999654432 21
Q ss_pred eeC--------CCCCEEEEEEeCC--EEEE-Ec---------CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC
Q 021744 225 LSG--------PVGQVYAMAVGND--LLFA-GT---------QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD 283 (308)
Q Consensus 225 ~~~--------~~~~v~~~~~~~~--~l~~-g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d 283 (308)
+.. ......-++++|+ .++. .. ..+.|.++|..+. +.+..+..- ..+.. +++||
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~vG-~~~~~iavS~D 309 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIELG-HEIDSINVSQD 309 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----eEEEEEeCC-CceeeEEECCC
Confidence 111 1233344999988 4443 21 1257999999987 666766643 35555 99999
Q ss_pred CC-eEEEee----ceEEEEeecCcee
Q 021744 284 VT-SLLGSV----SFIMFIGQNNKGV 304 (308)
Q Consensus 284 ~~-~l~~s~----s~~i~~~~~~~~~ 304 (308)
++ +|+++. ++.++-..+.+.+
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 99 776444 4555555555444
No 260
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=1.1e-07 Score=77.23 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=113.9
Q ss_pred EecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe-eCcc-
Q 021744 74 FANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQ- 150 (308)
Q Consensus 74 ~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-~~h~- 150 (308)
..+++.. ++++.++.|..||..+++.+-... ....+.......++..+.+..++.++.+|..++ +.+... ....
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~~ 108 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD--LPGPISGAPVVDGGRVYVGTSDGSLYALDAKTG-KVLWSIYLTSSP 108 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEE--CSSCGGSGEEEETTEEEEEETTSEEEEEETTTS-CEEEEEEE-SSC
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee--ccccccceeeecccccccccceeeeEecccCCc-ceeeeecccccc
Confidence 4445556 777899999999998886542222 122222222344555566778889999999999 566653 3221
Q ss_pred --cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC-e----e-------EEE-EcCCCEEEEE-cCCc-EE
Q 021744 151 --KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-E----V-------GCM-ISEGPWIFIG-VTNF-VK 213 (308)
Q Consensus 151 --~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~-~----v-------~~~-~~~~~~l~~~-~d~~-i~ 213 (308)
...........+..++.+..++.|..+|+++|+.+....... . + ... ..++ .++++ .++. +.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA 187 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence 111222233337788888889999999999999998887322 1 1 122 2345 55544 4775 55
Q ss_pred EEEcCCCceeeeeCCCCCEEE-EEEeCCEEEEEcCCCeEEEEEcCCCC
Q 021744 214 AWNTQTNTDLSLSGPVGQVYA-MAVGNDLLFAGTQDGAILAWKFNVTT 260 (308)
Q Consensus 214 ~wd~~~~~~~~~~~~~~~v~~-~~~~~~~l~~g~~dg~i~iwd~~~~~ 260 (308)
+ |+.+++... ......+.. .....+.++.++.++.|..||+++++
T Consensus 188 ~-d~~tg~~~w-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 188 V-DLATGEKLW-SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp E-ETTTTEEEE-EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred E-ECCCCCEEE-EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 5 999998763 222333444 33333477777799999999999984
No 261
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.03 E-value=6.1e-09 Score=81.28 Aligned_cols=209 Identities=11% Similarity=0.120 Sum_probs=123.7
Q ss_pred cCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCeeeccCC------CcE
Q 021744 17 GGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWGRNNNFN------NHS 89 (308)
Q Consensus 17 ~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~~s~~~d------~~i 89 (308)
++...-+..++.++++..|+.+-+.+...- ....++ .+ .-|.+. ...+...++.+.+..= +..
T Consensus 92 ~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~----~~~~~~-i~-----~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 92 DPNDACTMTDNRVCIGYADGSLAVFSTDKD----LALMSR-IP-----SIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred CCcccccccCCceEecCCCceEEEEechHH----Hhhhhh-cc-----cccccccccceeecccEEecCCcceEeeccce
Confidence 333444555789999999999999987653 001111 11 111122 3333333433222211 235
Q ss_pred EEEECCCCCCcccccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEE
Q 021744 90 NNYRAGNSKNSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLY 166 (308)
Q Consensus 90 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~ 166 (308)
++|++.....+....+... .+.+++-.|.-. .+.|+.||.+.+||++....+...++.|+.+++.+-|+| ++..|+
T Consensus 162 ~a~~~~p~~t~~~~~~~~~-~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALD-AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeecccccccccccccccc-cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 6677654333221222222 255555555542 378999999999999988666778889999999999998 568899
Q ss_pred EeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEE---cCCC--cee-eeeCCCCCEEEEEEeCC
Q 021744 167 SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWN---TQTN--TDL-SLSGPVGQVYAMAVGND 240 (308)
Q Consensus 167 s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd---~~~~--~~~-~~~~~~~~v~~~~~~~~ 240 (308)
++++||.+.-||..+ ..+. +.... ..+..|= .-.. +.. .+..-.-.|+++.+..+
T Consensus 241 t~sedGslw~wdas~-~~l~-i~~~~-----------------s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~ 301 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST-TFLS-ISNQA-----------------SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGP 301 (319)
T ss_pred EecCCCcEEEEcCCC-ceEE-ecCcc-----------------ccccccccCCcccceEeeeccccccceeeeeeeccCc
Confidence 999999999999775 2222 11111 1122220 0000 000 12223346777877777
Q ss_pred EEEEEcCCCeEEEEE
Q 021744 241 LLFAGTQDGAILAWK 255 (308)
Q Consensus 241 ~l~~g~~dg~i~iwd 255 (308)
.|++|+.-+.|++++
T Consensus 302 ~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 302 CLVCGTDAEAIYLTR 316 (319)
T ss_pred eEEeccccceEEEec
Confidence 899999988888875
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=4.7e-08 Score=86.50 Aligned_cols=266 Identities=7% Similarity=0.038 Sum_probs=174.1
Q ss_pred CCceEEecCCCeEEEeecCCC----CCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC
Q 021744 26 GGLSTADTRQKVCNYWRAGKC----NRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK 98 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~----~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~ 98 (308)
.++||+|+.||.++|-..++. ++.+ ..-.........+.||... .+.|+..... -|...+|-|.||-+-.++
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccc-cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence 468999999999999876543 1122 1111223445677899998 6777777666 777899999999997776
Q ss_pred Ccccccce-eeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEE
Q 021744 99 NSNINNRA-VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176 (308)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~ 176 (308)
....-... .+..|.+++|..+|.. ...-+||.|.+=.+...+-.-+.+++. -...+.|++|.+.++.+-..|.+.+
T Consensus 105 W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hl 182 (1189)
T KOG2041|consen 105 WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHL 182 (1189)
T ss_pred HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHHhhhcCCcEEE
Confidence 54333322 3334788888888865 556677877776665542111233332 2347889999999988889999999
Q ss_pred EeCCCC-------eEEEEEe-----CCCeeEEE----------EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEE
Q 021744 177 WDCASG-------QCAGVIN-----LGGEVGCM----------ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVY 233 (308)
Q Consensus 177 wd~~~~-------~~~~~~~-----~~~~v~~~----------~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~ 233 (308)
+|.+.. .+..... .+..+..+ -|+...++++. +|.+.+..-...+...+......+.
T Consensus 183 ydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~v 262 (1189)
T KOG2041|consen 183 YDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIV 262 (1189)
T ss_pred ecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEee
Confidence 997642 1111111 11112211 14566788887 7788877555444332222346788
Q ss_pred EEEEeCC--EEEEEcCCC---------eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEee
Q 021744 234 AMAVGND--LLFAGTQDG---------AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQ 299 (308)
Q Consensus 234 ~~~~~~~--~l~~g~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~ 299 (308)
.+.|+++ .|+.++.+. .|.+|..-. +.+.+++.....|+. +|-..|-.++.+.+..||+..
T Consensus 263 gakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-----~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyfan 335 (1189)
T KOG2041|consen 263 GAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-----HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFAN 335 (1189)
T ss_pred cceecCCCcEEEEccCcccccCccccceEEEeccch-----hheEEEecCCceeeeeEEcCCceEEEEEecceEEEEe
Confidence 9999999 777777542 455554332 677888888888998 998888888877777777654
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=1.8e-07 Score=73.65 Aligned_cols=207 Identities=7% Similarity=-0.036 Sum_probs=131.7
Q ss_pred eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeEeeCccc--ceEEE
Q 021744 81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK--VVSGI 156 (308)
Q Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~--~v~~~ 156 (308)
|.|+..|...+|...+.+.....-..+...+..+.-..+. ....++.|.++++.++.-+. ... .-|.. .+.++
T Consensus 88 a~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~--~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 88 ADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-NKF--AVHNQNLTQNSL 164 (344)
T ss_pred EeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-ccc--eeeccccceeee
Confidence 8888999999999976654322212222222222222222 23557778888888876552 111 12333 37899
Q ss_pred EEeCCCCEEEEeeCCCcEEEEeCCCC-eEEEEEe-----CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee------
Q 021744 157 TLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN-----LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL------ 223 (308)
Q Consensus 157 ~~~~~~~~l~s~s~dg~v~~wd~~~~-~~~~~~~-----~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~------ 223 (308)
+++++++++++.+....|..|.+... +.+..+. ..+-..++......+|++. ||++.+||++.....
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 99999999999999999999988753 3333222 2223344455666777776 999999999975322
Q ss_pred eeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCCCCcccccceec----cccC-CCeEE-EEecCCCeEEEee
Q 021744 224 SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASL----KVHT-DSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 224 ~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~~-~~v~~-~~s~d~~~l~~s~ 291 (308)
+...|.+.++.+.|++. +|+..-.-+.+.+.|+++... .+.+... ..|. ..+.. .|+.++.-..++.
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~-~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN-HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce-eeEEecCccccccccccccccccccCCCccccccc
Confidence 34568899999999964 666666678999999998753 1111111 1222 33666 8888777665544
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=5.8e-08 Score=77.17 Aligned_cols=209 Identities=11% Similarity=0.096 Sum_probs=134.5
Q ss_pred eeccCCCcEEEEECCCCCCccc--ccceeee---eeeeeeeecCCce-EEeeCCCeEEEEEcCCC-ceeeeEeeCcccce
Q 021744 81 RNNNFNNHSNNYRAGNSKNSNI--NNRAVIK---TDILCRNWVQGNC-MYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVV 153 (308)
Q Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~-~~~~~~~~~h~~~v 153 (308)
+-+-.+|.|.++...-...... .+...+- ...+..+++.+.. +++..+|.+.+-+.... -+..+.++.|+-+.
T Consensus 89 ~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~ 168 (339)
T KOG0280|consen 89 LDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEA 168 (339)
T ss_pred eeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceee
Confidence 6677788899987743221111 1111111 1334556666644 66777888885554433 13345788999999
Q ss_pred EEEEEeC-CCCEEEEeeCCCcEEEEeCC-CCeEEEEE-e-CCCeeEEEE---cCCCEEEEEc-CCcEEEEEcCC-Cceee
Q 021744 154 SGITLPS-GSDKLYSGSKDETVRVWDCA-SGQCAGVI-N-LGGEVGCMI---SEGPWIFIGV-TNFVKAWNTQT-NTDLS 224 (308)
Q Consensus 154 ~~~~~~~-~~~~l~s~s~dg~v~~wd~~-~~~~~~~~-~-~~~~v~~~~---~~~~~l~~~~-d~~i~~wd~~~-~~~~~ 224 (308)
+...|+. +.+.+.+|+.|+.+..||++ .++.+..- + |..-+.++. +.+.++++|+ |..|++||.|. ++++.
T Consensus 169 Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 169 WTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred eeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence 9999975 44788999999999999999 44555442 2 566666663 3467899998 99999999995 45553
Q ss_pred eeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccc-cceeccccCCCeEE-EEecCCCeEEE
Q 021744 225 LSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE-PAASLKVHTDSNRA-HFSRDVTSLLG 289 (308)
Q Consensus 225 ~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~v~~-~~s~d~~~l~~ 289 (308)
-..-.+.|+.+..+|. .++.++--+-.+|-+.......++ .....+.|.+-+.. .|..-..++++
T Consensus 249 ~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lAT 318 (339)
T KOG0280|consen 249 KAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLAT 318 (339)
T ss_pred cCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeee
Confidence 3344578999999998 445555556677888776543111 23344567666666 77444334544
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.98 E-value=2.4e-06 Score=72.32 Aligned_cols=229 Identities=10% Similarity=0.027 Sum_probs=128.7
Q ss_pred CCCCCceEEec---------CCCeEEEeecCCCCCCCCCcccccCCCCCCcc---ccccceeEEecCCCe-eecc-C-CC
Q 021744 23 GGGGGLSTADT---------RQKVCNYWRAGKCNRFPCPYLHRELPLPPAAT---ANGAAAKRFANNTWG-RNNN-F-NN 87 (308)
Q Consensus 23 ~~~~~~~~s~s---------~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~~i~~s~~g~~-~s~~-~-d~ 87 (308)
.|+..+.++.+ .+..|.+||..+.. ...+++.+...+ +-.....+++|||+. +... . +.
T Consensus 55 pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~ 128 (352)
T TIGR02658 55 SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL------PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSP 128 (352)
T ss_pred CCCCEEEEEeccccccccCCCCCEEEEEECccCc------EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCC
Confidence 44455666677 78999999999871 122233332211 111126899999998 4443 4 79
Q ss_pred cEEEEECCCCCCcccccceeee------eeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEE-EEE
Q 021744 88 HSNNYRAGNSKNSNINNRAVIK------TDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSG-ITL 158 (308)
Q Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~-~~~ 158 (308)
.|-+.|+.+++.+.+....-.. .......+.++.. ++-..+|.... .....+.+-..++.. -.|
T Consensus 129 ~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~-------~~~~vf~~~~~~v~~rP~~ 201 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI-------KPTEVFHPEDEYLINHPAY 201 (352)
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE-------eeeeeecCCccccccCCce
Confidence 9999999888765422211000 0111222333322 22222333211 001111110011000 034
Q ss_pred eC-CCCEEEEeeCCCcEEEEeCCC-----CeEEEEEeCCC----------eeEEEEcCCCEEEEEc-----------CCc
Q 021744 159 PS-GSDKLYSGSKDETVRVWDCAS-----GQCAGVINLGG----------EVGCMISEGPWIFIGV-----------TNF 211 (308)
Q Consensus 159 ~~-~~~~l~s~s~dg~v~~wd~~~-----~~~~~~~~~~~----------~v~~~~~~~~~l~~~~-----------d~~ 211 (308)
.+ ++.++....+ |+|.+-|+.. .+....+.... +...+.++++.+++.. .+.
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 55 7777666555 9999999654 33333322111 1244567888777631 258
Q ss_pred EEEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEc-CCCeEEEEEcCCCCcccccceec
Q 021744 212 VKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGT-QDGAILAWKFNVTTNCFEPAASL 269 (308)
Q Consensus 212 i~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~ 269 (308)
|.++|..+++.+....-...+..++++|| +|++.. .++.|.++|..+. +.+.++
T Consensus 281 V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~----k~i~~i 338 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG----KELSSV 338 (352)
T ss_pred EEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC----eEEeee
Confidence 99999999998843333558999999998 444444 6788999999987 666666
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=2.3e-06 Score=70.27 Aligned_cols=218 Identities=11% Similarity=0.115 Sum_probs=139.6
Q ss_pred CCcEEEEECCC--CCCcccccceeeeeeeeeeeecCCceE-Ee---eCCCeEEEEEcCC--Cc-eeeeEeeCcccceEEE
Q 021744 86 NNHSNNYRAGN--SKNSNINNRAVIKTDILCRNWVQGNCM-YG---EKCKFLHSWTVGD--GF-KLLTQLEGHQKVVSGI 156 (308)
Q Consensus 86 d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g---~~d~~i~iwd~~~--~~-~~~~~~~~h~~~v~~~ 156 (308)
++-|.+|++++ ++............+..+.+.++.+++ ++ +.+|.|-.|.+.. +. ..+........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56699999963 333222333444558889999998652 22 2367777777664 42 1111111122344889
Q ss_pred EEeCCCCEEEEeeC-CCcEEEEeCCC-Ce---EEEEEeCCCe------------eEEEEcCCCEEEEEc--CCcEEEEEc
Q 021744 157 TLPSGSDKLYSGSK-DETVRVWDCAS-GQ---CAGVINLGGE------------VGCMISEGPWIFIGV--TNFVKAWNT 217 (308)
Q Consensus 157 ~~~~~~~~l~s~s~-dg~v~~wd~~~-~~---~~~~~~~~~~------------v~~~~~~~~~l~~~~--d~~i~~wd~ 217 (308)
++++++++++++.. -|.|.++-++. |. .+..++|.+. ...+.|++++|++.. -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999988876 46899998865 33 2333443322 123358899999876 558999999
Q ss_pred CCCceee----eeCCCCCEEEEEEeCC--E-EEEEcCCCeEEEEEcCCCCcccccceecc----c--cCCCeEE-EEecC
Q 021744 218 QTNTDLS----LSGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFNVTTNCFEPAASLK----V--HTDSNRA-HFSRD 283 (308)
Q Consensus 218 ~~~~~~~----~~~~~~~v~~~~~~~~--~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~----~--~~~~v~~-~~s~d 283 (308)
..+.+.. ........+-|.|+|+ + .+..=.+++|.+|........++.++.+. . ....... ..++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9776541 1133456788999999 3 33455689999999988533234444432 1 1234445 88999
Q ss_pred CCeEEEee----ceEEEEeecCce
Q 021744 284 VTSLLGSV----SFIMFIGQNNKG 303 (308)
Q Consensus 284 ~~~l~~s~----s~~i~~~~~~~~ 303 (308)
|++|.+|- ++.+|-...+.+
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCC
Confidence 99999987 677777666654
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=7e-08 Score=84.56 Aligned_cols=183 Identities=11% Similarity=0.011 Sum_probs=111.7
Q ss_pred eeEEecCCCe--eeccC---CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEee--CCCeEEEEEcCCCce
Q 021744 71 AKRFANNTWG--RNNNF---NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGE--KCKFLHSWTVGDGFK 141 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~--~d~~i~iwd~~~~~~ 141 (308)
...|+|||+. +..+. +..|.++|+.+++... ............|+|+|.. ++.+ .+..|.++|+.++ +
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g-~ 268 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK-T 268 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC-c
Confidence 5699999983 33233 3468888987775432 1112233445678999954 2333 2457888888777 3
Q ss_pred eeeEeeCcccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEE-c-C-------
Q 021744 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG-V-T------- 209 (308)
Q Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~-d------- 209 (308)
...+..+........|+|||+.|+-.+. .+ .|.+.|+.+++..+..........++|+++.|+.. . .
T Consensus 269 -~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~ 347 (419)
T PRK04043 269 -LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKN 347 (419)
T ss_pred -EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCC
Confidence 3444444443456689999988765553 33 67888888877644333222233667899988743 2 2
Q ss_pred -CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc-CCC--eEEEEEcCC
Q 021744 210 -NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDG--AILAWKFNV 258 (308)
Q Consensus 210 -~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg--~i~iwd~~~ 258 (308)
..|.+.|+.+++...+.... ......|+|| .++..+ ..+ .+.+.++..
T Consensus 348 ~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 348 TFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 26888899988777555432 3335889999 333333 223 366667665
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4.8e-07 Score=77.95 Aligned_cols=210 Identities=11% Similarity=0.080 Sum_probs=137.6
Q ss_pred eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCc--eE------EeeCCCeEEEEEcCCCc--
Q 021744 71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN--CM------YGEKCKFLHSWTVGDGF-- 140 (308)
Q Consensus 71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~g~~d~~i~iwd~~~~~-- 140 (308)
+..|++|..++.--..+.+.+|++...+.+ ...-+...+....++|.+. .+ .++.-..++||......
T Consensus 130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~~--~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~ 207 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVSNEVQFYDLGSFKTI--QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH 207 (566)
T ss_pred ccccccchhhhhhhhcceEEEEecCCccce--eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence 788888888744445667999999764433 3333444566677777642 11 25667889999876321
Q ss_pred ee--eeEeeCcccceEEEEEeCCCCE-E--EEeeCCC---------cEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEE
Q 021744 141 KL--LTQLEGHQKVVSGITLPSGSDK-L--YSGSKDE---------TVRVWDCASGQCAGVINLGGEVGCM--ISEGPWI 204 (308)
Q Consensus 141 ~~--~~~~~~h~~~v~~~~~~~~~~~-l--~s~s~dg---------~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l 204 (308)
+. .++|. ...=..+.|++-+.- | ++..-|. ++++.+++...++..+...++|-++ .++++.+
T Consensus 208 ~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 208 QPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREF 285 (566)
T ss_pred chhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEE
Confidence 11 11221 223346788876643 2 2333333 6888888866677677778888877 3677766
Q ss_pred EE--Ec-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc---CCCeEEEEEcCCCCcccccceeccccCCCe
Q 021744 205 FI--GV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT---QDGAILAWKFNVTTNCFEPAASLKVHTDSN 276 (308)
Q Consensus 205 ~~--~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 276 (308)
++ |. --.+.+||++......+ .+++-+++-|+|. +++.++ ..|.|.+||+.+. +++..+.. ....
T Consensus 286 ~VvyGfMPAkvtifnlr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~----K~i~~~~a-~~tt 358 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR----KLIAKFKA-ANTT 358 (566)
T ss_pred EEEEecccceEEEEcCCCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch----hhcccccc-CCce
Confidence 65 44 56899999987655544 3556788999998 555444 3578999999995 66776664 3344
Q ss_pred EEEEecCCCeEEEee
Q 021744 277 RAHFSRDVTSLLGSV 291 (308)
Q Consensus 277 ~~~~s~d~~~l~~s~ 291 (308)
.+.|+|||++++++.
T Consensus 359 ~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 359 VFEWSPDGEYFLTAT 373 (566)
T ss_pred EEEEcCCCcEEEEEe
Confidence 459999999999655
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=7.1e-06 Score=67.43 Aligned_cols=228 Identities=11% Similarity=0.105 Sum_probs=143.2
Q ss_pred eeEEecCCCe-eecc-C--CCcEEEEECCC--CCCcccccceeee-eeeeeeeecCCceE-Ee-eCCCeEEEEEcCC-Cc
Q 021744 71 AKRFANNTWG-RNNN-F--NNHSNNYRAGN--SKNSNINNRAVIK-TDILCRNWVQGNCM-YG-EKCKFLHSWTVGD-GF 140 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~-~--d~~i~vwd~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g-~~d~~i~iwd~~~-~~ 140 (308)
-++++|++++ .++. . ++.|-.|.++. |............ ....++..++++++ ++ -..|.|.++-++. +.
T Consensus 44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~ 123 (346)
T COG2706 44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGS 123 (346)
T ss_pred eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCc
Confidence 4899999987 3333 3 57788887754 4332222222222 24677888888773 33 3568899998865 31
Q ss_pred --eeeeEeeCcccc----------eEEEEEeCCCCEEEEeeC-CCcEEEEeCCCCeEEEEEe------CCCeeEEEEcCC
Q 021744 141 --KLLTQLEGHQKV----------VSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVIN------LGGEVGCMISEG 201 (308)
Q Consensus 141 --~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~------~~~~v~~~~~~~ 201 (308)
..+..+ .|.+. +....+.|++++|+++.. --.|.+|++..++....-. ...+-..+.|++
T Consensus 124 l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~ 202 (346)
T COG2706 124 LQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNG 202 (346)
T ss_pred cccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCC
Confidence 112222 35554 888999999999988754 2369999999765443222 122333456888
Q ss_pred CEEEE-Ec-CCcEEEEEcCCC--ceeeeeC---------CCCCEEEEEEeCC--EEEEEc-CCCeEEEEEcCCCCccccc
Q 021744 202 PWIFI-GV-TNFVKAWNTQTN--TDLSLSG---------PVGQVYAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEP 265 (308)
Q Consensus 202 ~~l~~-~~-d~~i~~wd~~~~--~~~~~~~---------~~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~ 265 (308)
++..+ +. +++|-+|..... +...+.. .....-.|.++++ +|.++. ....|.+|.+......+..
T Consensus 203 k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~ 282 (346)
T COG2706 203 KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLEL 282 (346)
T ss_pred cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEE
Confidence 88774 44 999999988773 2222211 2346778889999 443332 2447888888765432344
Q ss_pred ceeccccCCCeEE-EEecCCCeEEEee----ceEEEEee
Q 021744 266 AASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQ 299 (308)
Q Consensus 266 ~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~ 299 (308)
+.....+....+. .|++++++|+++. .+.+|-..
T Consensus 283 ~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 283 VGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred EEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 4555566666777 9999999999887 44555444
No 270
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.95 E-value=5.2e-08 Score=79.08 Aligned_cols=197 Identities=12% Similarity=0.139 Sum_probs=130.5
Q ss_pred eeeeeeecCCce-EEeeCCCeEEEEEcCCCce----eeeEeeCcc------------cceEEEEEeCCC--CEEEEeeCC
Q 021744 111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK----LLTQLEGHQ------------KVVSGITLPSGS--DKLYSGSKD 171 (308)
Q Consensus 111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~----~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~s~d 171 (308)
+.++.|...|.. ++|..+|.|.++.-....+ ....++.|. ..|..+.|.+++ ..++....|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 677889889976 8999999999997654322 233444443 568889998765 457788899
Q ss_pred CcEEEEeCCCCeEEE-----------------------------------EEe--CCCeeEEEE--cCCCEEEEEcCCcE
Q 021744 172 ETVRVWDCASGQCAG-----------------------------------VIN--LGGEVGCMI--SEGPWIFIGVTNFV 212 (308)
Q Consensus 172 g~v~~wd~~~~~~~~-----------------------------------~~~--~~~~v~~~~--~~~~~l~~~~d~~i 212 (308)
++|++|-+....... .+. |...+.+++ +|.+.++++.|=.|
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRI 187 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRI 187 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceee
Confidence 999999775421111 011 223344443 56778888888899
Q ss_pred EEEEcCCC-c---eeeeeCCC-----CCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceecccc--------
Q 021744 213 KAWNTQTN-T---DLSLSGPV-----GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH-------- 272 (308)
Q Consensus 213 ~~wd~~~~-~---~~~~~~~~-----~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-------- 272 (308)
.+|++.-- + .+.++.+. .-|++..|+|. .|+-.+..|+|++-|++....+....+.+...
T Consensus 188 NLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsf 267 (433)
T KOG1354|consen 188 NLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSF 267 (433)
T ss_pred eeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhh
Confidence 99998632 2 22334333 36889999998 78888899999999999543322222222211
Q ss_pred ----CCCeEE-EEecCCCeEEEee--ceEEEEe-ecCceeEEe
Q 021744 273 ----TDSNRA-HFSRDVTSLLGSV--SFIMFIG-QNNKGVVCY 307 (308)
Q Consensus 273 ----~~~v~~-~~s~d~~~l~~s~--s~~i~~~-~~~~~~~~~ 307 (308)
-..|+. .|++.|+|+++-- ++.+|.. .+++-+..|
T Consensus 268 fseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 268 FSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETY 310 (433)
T ss_pred HHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEE
Confidence 124666 8999999999754 7788876 344444433
No 271
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=8.7e-09 Score=83.52 Aligned_cols=141 Identities=13% Similarity=0.196 Sum_probs=107.6
Q ss_pred EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC-----CeEEEEEeCCCeeEEE
Q 021744 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-----GQCAGVINLGGEVGCM 197 (308)
Q Consensus 123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-----~~~~~~~~~~~~v~~~ 197 (308)
++.+.+..|-+-+++++. .+.|. .++.|.++.|...++++..|...|.|...|++. +.+...+.|+..++++
T Consensus 228 fs~G~sqqv~L~nvetg~--~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH--QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccc--ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 456667788888998883 22333 678899999998899999999999999999986 4677778899999987
Q ss_pred E---cCCCEEEEEc-CCcEEEEEcCCCce---e-eeeCCCCCEEEEE--EeCC--EEEEEcCCCeEEEEEcCCCCccccc
Q 021744 198 I---SEGPWIFIGV-TNFVKAWNTQTNTD---L-SLSGPVGQVYAMA--VGND--LLFAGTQDGAILAWKFNVTTNCFEP 265 (308)
Q Consensus 198 ~---~~~~~l~~~~-d~~i~~wd~~~~~~---~-~~~~~~~~v~~~~--~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~ 265 (308)
- .++++|.+++ +|+|++||++--++ + ...+|...-.-+- +.+. .++++++|-..+||.++.+ .+
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g----hL 380 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG----HL 380 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC----ce
Confidence 2 3566666555 99999999997665 3 6667765333232 3344 8888999999999999987 66
Q ss_pred ceecc
Q 021744 266 AASLK 270 (308)
Q Consensus 266 ~~~~~ 270 (308)
+.++.
T Consensus 381 l~tip 385 (425)
T KOG2695|consen 381 LCTIP 385 (425)
T ss_pred eeccC
Confidence 66655
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.92 E-value=1.3e-07 Score=75.14 Aligned_cols=188 Identities=14% Similarity=0.036 Sum_probs=123.1
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCC-cccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeE-
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-SNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQ- 145 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~- 145 (308)
++.|++.+.. +++-.+|.+.+-+...... ..+..+.|+.....+.|+... +. .+|+.|+.+.-||++...+.+..
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n 205 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN 205 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec
Confidence 7888998888 8888889888554433322 223567888888888887655 33 88999999999999944344433
Q ss_pred eeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCC-CeEEEEEeCCCeeEEEE--c--CCCEEEEEcCCcEEEEEcCC
Q 021744 146 LEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEVGCMI--S--EGPWIFIGVTNFVKAWNTQT 219 (308)
Q Consensus 146 ~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~~~~~v~~~~--~--~~~~l~~~~d~~i~~wd~~~ 219 (308)
.+-|...|.++.-+| .+.++++|++|-.|++||.++ ++++..-+..+-+..+. | .+++|+++.-+-.++-+...
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence 567899999998775 678999999999999999994 77776666555555442 2 13344455444445555443
Q ss_pred C--c---ee-eeeCCCCCEEEEEEeCC--EEEEEcC-CCeEE-EEEcCC
Q 021744 220 N--T---DL-SLSGPVGQVYAMAVGND--LLFAGTQ-DGAIL-AWKFNV 258 (308)
Q Consensus 220 ~--~---~~-~~~~~~~~v~~~~~~~~--~l~~g~~-dg~i~-iwd~~~ 258 (308)
+ + .. ..+.|.+-++.-.|... .|++++. |+.++ +|-.-+
T Consensus 286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 3 2 11 34455554555555222 6787653 55544 664443
No 273
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.92 E-value=2e-06 Score=73.89 Aligned_cols=189 Identities=11% Similarity=0.112 Sum_probs=118.5
Q ss_pred eeEEecCCCe-eecc-CCCcEEEEECCCC-CCcccc-cce-----------eeeeeeeeeeecCCce--EEeeCCCeEEE
Q 021744 71 AKRFANNTWG-RNNN-FNNHSNNYRAGNS-KNSNIN-NRA-----------VIKTDILCRNWVQGNC--MYGEKCKFLHS 133 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~-~d~~i~vwd~~~~-~~~~~~-~~~-----------~~~~~~~~~~~~~~~~--~~g~~d~~i~i 133 (308)
.++++|++++ +++. .+++|.+++++.. ...... ... .......+.+.|++.. +..-....|++
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 6899999999 5555 5899999999753 222111 111 1112567889999976 33445568999
Q ss_pred EEcCCCc-ee--eeEee-CcccceEEEEEeCCCCEEE-EeeCCCcEEEEeCC--CCe--EEEEEe-C----C-C-eeE--
Q 021744 134 WTVGDGF-KL--LTQLE-GHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCA--SGQ--CAGVIN-L----G-G-EVG-- 195 (308)
Q Consensus 134 wd~~~~~-~~--~~~~~-~h~~~v~~~~~~~~~~~l~-s~s~dg~v~~wd~~--~~~--~~~~~~-~----~-~-~v~-- 195 (308)
|++.... ++ ...+. ......+.++|+|++++++ ..-.+++|.++++. +++ .++.+. . . . ...
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 9987652 12 12222 2345678999999998875 44567889999988 443 233333 1 1 1 122
Q ss_pred EEEcCCCEEEEEc--CCcEEEEEcC--CCcee---eeeCCCCCEEEEEEeCC--EEE-EEcCCCeEEEEEcCCC
Q 021744 196 CMISEGPWIFIGV--TNFVKAWNTQ--TNTDL---SLSGPVGQVYAMAVGND--LLF-AGTQDGAILAWKFNVT 259 (308)
Q Consensus 196 ~~~~~~~~l~~~~--d~~i~~wd~~--~~~~~---~~~~~~~~v~~~~~~~~--~l~-~g~~dg~i~iwd~~~~ 259 (308)
.+++++++|+++. .+.|.+|++. ++++. .+.......+.++++|+ +|+ +.-.++.|.+|++...
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 3468999999765 7799999994 34443 23333445899999999 555 4456789999988643
No 274
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.91 E-value=7.2e-09 Score=58.39 Aligned_cols=38 Identities=37% Similarity=0.663 Sum_probs=36.3
Q ss_pred eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (308)
Q Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd 178 (308)
+++.++++|++.|.+++|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56889999999999999999999999999999999997
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.89 E-value=9.1e-07 Score=75.03 Aligned_cols=207 Identities=10% Similarity=0.036 Sum_probs=138.9
Q ss_pred EecCCCeeeccCCCcEEEEECCCCCCcccccc--ee---eee--eeeee----eec-CCceEEeeCCCeEEEEEcCCCce
Q 021744 74 FANNTWGRNNNFNNHSNNYRAGNSKNSNINNR--AV---IKT--DILCR----NWV-QGNCMYGEKCKFLHSWTVGDGFK 141 (308)
Q Consensus 74 ~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~--~~---~~~--~~~~~----~~~-~~~~~~g~~d~~i~iwd~~~~~~ 141 (308)
.+.||+.+.-+..|.|.++|.++......... .. +.. +.... |++ +|..++--+-|...|.+...+ .
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~-~ 352 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDG-Y 352 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCC-e
Confidence 35677765556667799999866543221111 11 111 11111 222 344433344567777766655 2
Q ss_pred eeeEeeCcccceEEEEEeCCCCEEEEeeCCC-cEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEcC-CcEEEEEc
Q 021744 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-TVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVT-NFVKAWNT 217 (308)
Q Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~d-~~i~~wd~ 217 (308)
.++ -+|...|.-..+..+++-++.|..|| .+-++|.++++.......-+.+.++ .++|++++++.+ ..|.+.|+
T Consensus 353 ~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 353 SIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI 430 (668)
T ss_pred eEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence 332 35778899999988888999999999 8999999998877666655666655 688999998885 49999999
Q ss_pred CCCceeee-eCCCCCEEEEEEeCC--EEEEEcCCC----eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744 218 QTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQDG----AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL 288 (308)
Q Consensus 218 ~~~~~~~~-~~~~~~v~~~~~~~~--~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~ 288 (308)
.++....+ +...+-|+.+.|+|+ ++|-+--+| .|+++|+..+ + +........-=.+ +|.||+++|.
T Consensus 431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~----K-iy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG----K-IYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC----e-EEEecCCcccccCcccCCCCcEEE
Confidence 99988743 344567999999999 777666555 5899999985 2 2333322333344 8999999886
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.89 E-value=1.9e-08 Score=89.14 Aligned_cols=209 Identities=13% Similarity=0.108 Sum_probs=141.7
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCC-CCcccccceeeee--eeeeeeecCC--ce-EEeeCCCeEEEEEcCCC--ce
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNS-KNSNINNRAVIKT--DILCRNWVQG--NC-MYGEKCKFLHSWTVGDG--FK 141 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~--~~~~~~~~~~--~~-~~g~~d~~i~iwd~~~~--~~ 141 (308)
++.++|.|.- |.++.-| +.+-|+... .+. ....|..+ +-...+++.. .+ +.......-.+|++... ..
T Consensus 29 a~si~p~grdi~lAsr~g-l~i~dld~p~~pp--r~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a 105 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQG-LYIIDLDDPFTPP--RWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA 105 (1081)
T ss_pred ceeeccccchhhhhhhcC-eEEEeccCCCCCc--eeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc
Confidence 5889999998 8888877 667777543 221 11112221 4445555554 22 44444555567887532 24
Q ss_pred eeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCC-eEEEEEe--CCCeeEEE--EcCCCEEEEEcCCcEEEE
Q 021744 142 LLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASG-QCAGVIN--LGGEVGCM--ISEGPWIFIGVTNFVKAW 215 (308)
Q Consensus 142 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~-~~~~~~~--~~~~v~~~--~~~~~~l~~~~d~~i~~w 215 (308)
+...+.+|...|+.+.|+|.. ..+++++.|-.|..||+++- .++..+. +......- ..++..++++..+.|.+|
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 455677999999999999865 56899999999999999974 4444443 22222222 356677777778899999
Q ss_pred EcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCC
Q 021744 216 NTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVT 285 (308)
Q Consensus 216 d~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~ 285 (308)
|++.+... .+++|...|+.++|..- .+.+++.||+|++||...... +. .....-..++.- +|-|-|+
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~-~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ES-KRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--cc-ceeccccCcceeccccccCc
Confidence 99987543 78889999999999876 889999999999999886532 22 222233456666 7777554
No 277
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=5.5e-08 Score=80.38 Aligned_cols=152 Identities=11% Similarity=0.139 Sum_probs=96.8
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCccc--ccceeeeeeeeeeeecCCce-E---EeeCCCeEEEEEcCCCceee
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI--NNRAVIKTDILCRNWVQGNC-M---YGEKCKFLHSWTVGDGFKLL 143 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~---~g~~d~~i~iwd~~~~~~~~ 143 (308)
.+.++|++.+ |.+..++...++++........ ...........+.|..+... . ..++...+.+|.+..+ ..
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~--~~ 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG--RC 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc--Cc
Confidence 4677888888 8888888877777743322000 11111122333344333322 2 2344555666665543 24
Q ss_pred eEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee
Q 021744 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (308)
Q Consensus 144 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~ 223 (308)
..+-||-..++.++|+||+++++++..|..|++-....--.+..+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf----------------------------------- 189 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF----------------------------------- 189 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-----------------------------------
Confidence 456689999999999999999999999999998665432222111
Q ss_pred eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCC
Q 021744 224 SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTT 260 (308)
Q Consensus 224 ~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~ 260 (308)
..+|..-|..++..++ .|++++.|++|++||+.+++
T Consensus 190 -clGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 190 -CLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred -ccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence 2357777777777777 67777778888888877763
No 278
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=4.4e-06 Score=66.68 Aligned_cols=232 Identities=10% Similarity=-0.035 Sum_probs=121.6
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
..++..-+|..|.+=.+... |-...-....|...+..+ .++||||+.. |.+...|+|+++|+........+.
T Consensus 9 Gk~lAi~qd~~iEiRsa~Dd------f~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDD------FSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred CcEEEEEeccEEEEEeccCC------chheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 34556667777777654322 000000011122223334 7999999999 999999999999996443221111
Q ss_pred -----ceeeeeeeeeeeecCC-------ceEEeeCCCeEEEEEcCCC----ceeeeEee---CcccceEEEEEeCCCCEE
Q 021744 105 -----RAVIKTDILCRNWVQG-------NCMYGEKCKFLHSWTVGDG----FKLLTQLE---GHQKVVSGITLPSGSDKL 165 (308)
Q Consensus 105 -----~~~~~~~~~~~~~~~~-------~~~~g~~d~~i~iwd~~~~----~~~~~~~~---~h~~~v~~~~~~~~~~~l 165 (308)
......+..+.|.... ..+.-..+|.++-|-+..+ .+..+++. .+...|.++.++|..++|
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL 162 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence 1111224444443332 2255566777777765321 12223322 247799999999998887
Q ss_pred EEeeCCCc-EEEEeCC-CCeEEEEEeCCCeeEEEEcCCCEEEEEcCC------cEEEEEcCCCcee-eeeCCCCCEEEEE
Q 021744 166 YSGSKDET-VRVWDCA-SGQCAGVINLGGEVGCMISEGPWIFIGVTN------FVKAWNTQTNTDL-SLSGPVGQVYAMA 236 (308)
Q Consensus 166 ~s~s~dg~-v~~wd~~-~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~------~i~~wd~~~~~~~-~~~~~~~~v~~~~ 236 (308)
+.|+.... -..+... .|-....+-.+. |-.+.+....++ +..+|.+-+.... ......+.|..|.
T Consensus 163 lVgG~~~~~~~~s~a~~~GLtaWRiL~~~------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 163 LVGGCEQNQDGMSKASSCGLTAWRILSDS------PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred EEeccCCCCCccccccccCceEEEEcCCC------CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 76654332 0000000 011111111111 111111111111 1233333332222 1233467899999
Q ss_pred EeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC
Q 021744 237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD 274 (308)
Q Consensus 237 ~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 274 (308)
.||| .||+...+|.|.+|++.+- ++...+..++.
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL----~~~~~W~~~eq 272 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSL----RLQRSWKQDEQ 272 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcc----hhhcccchhhC
Confidence 9999 9999999999999999985 55555554433
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.8e-08 Score=86.63 Aligned_cols=142 Identities=19% Similarity=0.287 Sum_probs=108.4
Q ss_pred ecCCceEEeeCCCeEEEEEcCCCc------eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-
Q 021744 117 WVQGNCMYGEKCKFLHSWTVGDGF------KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN- 189 (308)
Q Consensus 117 ~~~~~~~~g~~d~~i~iwd~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~- 189 (308)
...+.+++++.|++|++|.++... .+..+++.|+.+|.++.|-.+.++++++ |+-+.+||.--++++....
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d 822 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED 822 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence 334466999999999999987431 3566788999999999999888888765 7889999988887766443
Q ss_pred -----CCCeeEEEEc-CCCEEEEE-c-CCcEEEEEcCCCcee-ee-----eCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744 190 -----LGGEVGCMIS-EGPWIFIG-V-TNFVKAWNTQTNTDL-SL-----SGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (308)
Q Consensus 190 -----~~~~v~~~~~-~~~~l~~~-~-d~~i~~wd~~~~~~~-~~-----~~~~~~v~~~~~~~~--~l~~g~~dg~i~i 253 (308)
....+.|+-. +..+++++ + ..+|+++|.+..+.. .+ .+....+.+++..+. .++.+-..|.|.+
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 2234555533 45556665 4 789999999988755 22 244567889999887 8999999999999
Q ss_pred EEcCCCC
Q 021744 254 WKFNVTT 260 (308)
Q Consensus 254 wd~~~~~ 260 (308)
.|.+++.
T Consensus 903 LDaR~G~ 909 (1034)
T KOG4190|consen 903 LDARNGK 909 (1034)
T ss_pred EecCCCc
Confidence 9999983
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=1.5e-08 Score=89.86 Aligned_cols=195 Identities=16% Similarity=0.238 Sum_probs=130.5
Q ss_pred ccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecC-CceEEeeCCCeEEEEEcCC
Q 021744 64 ATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQ-GNCMYGEKCKFLHSWTVGD 138 (308)
Q Consensus 64 ~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~~i~iwd~~~ 138 (308)
+.||..+ .+-|+|.... ++++.|-.+..||+.......-....-......+.++-. +..++.+..+.|++||.+.
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccC
Confidence 4577777 7888888766 999999999999997664332222222222444555443 3446667788899999998
Q ss_pred CceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCC--eEEEEEeCCCeeE--EEEc--CCCEEE-E-E--
Q 021744 139 GFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASG--QCAGVINLGGEVG--CMIS--EGPWIF-I-G-- 207 (308)
Q Consensus 139 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~--~~~~~~~~~~~v~--~~~~--~~~~l~-~-~-- 207 (308)
+..++..+++|...|..++|+. ....+.+++.|++|++||.... +.........++. +..| +|.++. . |
T Consensus 190 gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n 269 (1081)
T KOG0309|consen 190 GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN 269 (1081)
T ss_pred CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe
Confidence 8788999999999999999985 3467899999999999998753 3333333333332 1222 222222 1 1
Q ss_pred ------cCCcEEEEEcCCC-cee-eeeCCCCCEEEEEEe-----------CC-EEEEEcCCCeEEEEEcCC
Q 021744 208 ------VTNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVG-----------ND-LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 208 ------~d~~i~~wd~~~~-~~~-~~~~~~~~v~~~~~~-----------~~-~l~~g~~dg~i~iwd~~~ 258 (308)
.++....|+..++ +++ ++.+|.+.|....|- .+ .|++=+.|..+++|-+.+
T Consensus 270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1333334444443 233 889999988666552 23 899999999999998754
No 281
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=1.1e-05 Score=70.73 Aligned_cols=225 Identities=10% Similarity=-0.012 Sum_probs=130.0
Q ss_pred CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCcccccccee--EEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAK--RFANNTWG-RNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i--~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~ 101 (308)
+..+...+.++.+.-+|..+++. +....-.. ...........+ ....++.. +.++.++.+..+|.++++..-
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEK----DGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCc----ccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 45677778888999899887732 21111100 000000000000 01112344 667788999999999887653
Q ss_pred cccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccce-----EEEEEeCCCCEEEEeeCCCcEEE
Q 021744 102 INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV-----SGITLPSGSDKLYSGSKDETVRV 176 (308)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~s~dg~v~~ 176 (308)
..... ..+...-...++..+.+..++.+..+|.+++ +.+..+......+ ...... +..++.++.++.+..
T Consensus 145 ~~~~~--~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a 219 (394)
T PRK11138 145 QTKVA--GEALSRPVVSDGLVLVHTSNGMLQALNESDG-AVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSA 219 (394)
T ss_pred cccCC--CceecCCEEECCEEEEECCCCEEEEEEccCC-CEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEE
Confidence 32211 1111111122455667778899999999999 6666654321110 111111 235777788999999
Q ss_pred EeCCCCeEEEEEeCCCe--------e-----EEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCCEEE
Q 021744 177 WDCASGQCAGVINLGGE--------V-----GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLF 243 (308)
Q Consensus 177 wd~~~~~~~~~~~~~~~--------v-----~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~ 243 (308)
.|.++++.+.......+ . .-+..++..++.+.++.+..+|..+++.+...... ....+....+.++
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~~vy 298 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG-SVNDFAVDGGRIY 298 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC-CccCcEEECCEEE
Confidence 99999988776652111 0 01123444444556999999999999877322211 1223445555777
Q ss_pred EEcCCCeEEEEEcCCCC
Q 021744 244 AGTQDGAILAWKFNVTT 260 (308)
Q Consensus 244 ~g~~dg~i~iwd~~~~~ 260 (308)
.++.+|.+..+|..+++
T Consensus 299 ~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 299 LVDQNDRVYALDTRGGV 315 (394)
T ss_pred EEcCCCeEEEEECCCCc
Confidence 77889999999998874
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=9.5e-08 Score=78.99 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=109.7
Q ss_pred CCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe----eeccCCCcEEEEEC
Q 021744 20 GGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG----RNNNFNNHSNNYRA 94 (308)
Q Consensus 20 ~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~----~s~~~d~~i~vwd~ 94 (308)
...++.+.++|.+..++.+.+.+....++ ...++. ... ....+ ++.|-.+... ..++....+.+|..
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~-~~~------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLD-VSC------VPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCC-cceeee-Eee------cccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34567788999999999888888665522 000000 000 11112 4555544444 34455566777776
Q ss_pred CCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEe-eCcccceEEEEEeCCCCEEEEeeCCC
Q 021744 95 GNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDE 172 (308)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg 172 (308)
..+. ..+..+|-..+..+.+++++.. +++..|..|++-..... -.+..+ .||+.-|..++.-++ ..|+|+|.|+
T Consensus 140 ~~~~--~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~ 215 (390)
T KOG3914|consen 140 DSGR--CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDK 215 (390)
T ss_pred cccC--cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccC-ceeeecCCCC
Confidence 5432 2366778888999999999977 89999999999766554 234443 579999999999864 5699999999
Q ss_pred cEEEEeCCCCeEEEEEe
Q 021744 173 TVRVWDCASGQCAGVIN 189 (308)
Q Consensus 173 ~v~~wd~~~~~~~~~~~ 189 (308)
+|++||+++++++.++.
T Consensus 216 tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCD 232 (390)
T ss_pred cEEEEecccCCcccccc
Confidence 99999999999987665
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=1.6e-05 Score=69.88 Aligned_cols=183 Identities=12% Similarity=0.058 Sum_probs=110.9
Q ss_pred eeeeeeeecCCc--eEEee---CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE-EeeCC--CcEEEEeCCC
Q 021744 110 TDILCRNWVQGN--CMYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKD--ETVRVWDCAS 181 (308)
Q Consensus 110 ~~~~~~~~~~~~--~~~g~---~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~d--g~v~~wd~~~ 181 (308)
....-.|+|+|. .+..+ .+..|+++|+.++. .. .+....+......|+||++.++ +.+.+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-~~-~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-KE-KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-EE-EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 355678999996 33222 24679999998873 32 2333455566788999998764 44434 4677889887
Q ss_pred CeEEEEEeCCC--eeEEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcC-C----
Q 021744 182 GQCAGVINLGG--EVGCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ-D---- 248 (308)
Q Consensus 182 ~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~-d---- 248 (308)
++......... ....++|+|+.|+..+ .+ .|.++|+.+++...+...... ...|+|+ .++..+. .
T Consensus 267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence 76444333332 1234578998777443 22 789999998887543322212 2489999 4444333 2
Q ss_pred ----CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecCc
Q 021744 249 ----GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNNK 302 (308)
Q Consensus 249 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~ 302 (308)
..|.+.|+.++. ...+.... .... .|+|||+.++-+. ...|+...-+.
T Consensus 345 ~~~~~~I~v~d~~~g~-----~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 345 GKNTFNLYLISTNSDY-----IRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCcEEEEEECCCCC-----eEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 368888887763 23333222 2234 8999999887433 44466555443
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.78 E-value=1.7e-05 Score=77.39 Aligned_cols=222 Identities=8% Similarity=0.013 Sum_probs=134.3
Q ss_pred eeEEecC-CCe-eeccCCCcEEEEECCCCCCccccc---c---------eeeeeeeeeeeecCCce--EEeeCCCeEEEE
Q 021744 71 AKRFANN-TWG-RNNNFNNHSNNYRAGNSKNSNINN---R---------AVIKTDILCRNWVQGNC--MYGEKCKFLHSW 134 (308)
Q Consensus 71 ~i~~s~~-g~~-~s~~~d~~i~vwd~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~--~~g~~d~~i~iw 134 (308)
.+++++. +.. ++-+..+.|++||........... . ..-.....+++.+++.. ++......|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 5888875 556 787888999999985432110000 0 01112456777776653 555566889999
Q ss_pred EcCCCceeeeEeeCc-----------------ccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCCeEEEEEeC------
Q 021744 135 TVGDGFKLLTQLEGH-----------------QKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINL------ 190 (308)
Q Consensus 135 d~~~~~~~~~~~~~h-----------------~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~------ 190 (308)
|..++. +.++.+- -.....++++| ++..+++.+.++.|++||..++........
T Consensus 652 d~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 652 DFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred ecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 987762 3333210 12346899999 556667878889999999987754321100
Q ss_pred ----------CCee-EEEEcCCCEEEEE-c-CCcEEEEEcCCCceeeeeC----------------------CCCCEEEE
Q 021744 191 ----------GGEV-GCMISEGPWIFIG-V-TNFVKAWNTQTNTDLSLSG----------------------PVGQVYAM 235 (308)
Q Consensus 191 ----------~~~v-~~~~~~~~~l~~~-~-d~~i~~wd~~~~~~~~~~~----------------------~~~~v~~~ 235 (308)
..+. .++.++++.|+++ . ++.|++||+.++....+.+ .-.....+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 0111 2345777755544 3 7899999998765331110 01134688
Q ss_pred EEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccc--------------cCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744 236 AVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV--------------HTDSNRA-HFSRDVTSLLGSV-SFIMFI 297 (308)
Q Consensus 236 ~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--------------~~~~v~~-~~s~d~~~l~~s~-s~~i~~ 297 (308)
+++++ ++++-+.+++|++||..++. . .++.+ .-..... +++++|+++++.. ...|.+
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~----v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKR----V-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCe----E-EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 89988 77778889999999998752 1 11111 1123445 8999998766544 444444
Q ss_pred ee
Q 021744 298 GQ 299 (308)
Q Consensus 298 ~~ 299 (308)
+.
T Consensus 885 id 886 (1057)
T PLN02919 885 LD 886 (1057)
T ss_pred EE
Confidence 44
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=3.6e-07 Score=81.08 Aligned_cols=215 Identities=9% Similarity=0.048 Sum_probs=141.9
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCC--------------cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEE
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKN--------------SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSW 134 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iw 134 (308)
++.|+.+..+ |.|+.||.++|-.+++... ..+.+.+|...|..+.|...... -+...+|.|.+|
T Consensus 19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW 98 (1189)
T ss_pred EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence 7899999999 9999999999998854321 11234678888888888877766 556689999999
Q ss_pred EcCCCceeeeEe--eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE-EEeCCCeeEEEE-cCCCEEEEEc-C
Q 021744 135 TVGDGFKLLTQL--EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-VINLGGEVGCMI-SEGPWIFIGV-T 209 (308)
Q Consensus 135 d~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~-~~~~~~~v~~~~-~~~~~l~~~~-d 209 (308)
-+-.+. -.... .-.++.|.+++|+.+|..+...-.||.|.+=.+...+.-. .++...-.-+.+ +|.+.++.+. +
T Consensus 99 mlykgs-W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~an 177 (1189)
T KOG2041|consen 99 MLYKGS-WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKAN 177 (1189)
T ss_pred eeeccc-HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcC
Confidence 987762 22222 1245778999999999999999999999887666433211 111111112233 4555555554 8
Q ss_pred CcEEEEEcCCCce--------ee----eeCCCCCEEEEEEe--------CC--EEEEEcCCCeEEEEEcCCCCcccccce
Q 021744 210 NFVKAWNTQTNTD--------LS----LSGPVGQVYAMAVG--------ND--LLFAGTQDGAILAWKFNVTTNCFEPAA 267 (308)
Q Consensus 210 ~~i~~wd~~~~~~--------~~----~~~~~~~v~~~~~~--------~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~ 267 (308)
|.+++||....-. +. +......+-.+.|. |+ .|+.+-..|.+.|..-.+.. .++.
T Consensus 178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~---~Pvv 254 (1189)
T KOG2041|consen 178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP---EPVV 254 (1189)
T ss_pred CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC---CCeE
Confidence 8999998764411 11 11122235556553 45 89999999999998766542 2222
Q ss_pred eccccCCCeEE-EEecCCCeEEEee
Q 021744 268 SLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 268 ~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
+ .-.-.+.. .|+++|.+|++++
T Consensus 255 -~-dtgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 255 -V-DTGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred -E-ecccEeecceecCCCcEEEEcc
Confidence 2 22345555 9999999999776
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=8e-08 Score=82.77 Aligned_cols=219 Identities=9% Similarity=0.110 Sum_probs=137.3
Q ss_pred CCceEEecCCCeEEEeecCCC-C---CCCCCcccccCCCCCCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCC
Q 021744 26 GGLSTADTRQKVCNYWRAGKC-N---RFPCPYLHRELPLPPAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKN 99 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~-~---~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~ 99 (308)
.+.++++|.|+++++|..... . ...|. -+++.|..+ .+.|-.+-++ .++.|+-|.+||.=.+.+
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQ---------fTY~aHkk~i~~igfL~~lr~-i~ScD~giHlWDPFigr~ 816 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQ---------FTYQAHKKPIHDIGFLADLRS-IASCDGGIHLWDPFIGRL 816 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCccccceee---------eEhhhccCcccceeeeeccce-eeeccCcceeecccccch
Confidence 467999999999999986532 0 01232 234455555 6777777655 344588899999866655
Q ss_pred cccccceee-ee--eeeeeeecCCce-EEe-eCCCeEEEEEcCCCceeeeEee-----CcccceEEEEEeCCCCEEEEee
Q 021744 100 SNINNRAVI-KT--DILCRNWVQGNC-MYG-EKCKFLHSWTVGDGFKLLTQLE-----GHQKVVSGITLPSGSDKLYSGS 169 (308)
Q Consensus 100 ~~~~~~~~~-~~--~~~~~~~~~~~~-~~g-~~d~~i~iwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s 169 (308)
+.+.....+ .. +..|.-+.+... +.| +...+|+++|.+.. +...+++ +....+.++++.+.|++++.+-
T Consensus 817 Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L 895 (1034)
T KOG4190|consen 817 LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL 895 (1034)
T ss_pred hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchheeEEEeccCcchhhHHh
Confidence 543222222 11 222333334433 444 67899999999877 4444443 3456789999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEe-CCCeeEEE-EcCCCEEEEE-cCCcEEE-EEcCCCcee-eeeCCCCCEEEEEEeCCEEEE
Q 021744 170 KDETVRVWDCASGQCAGVIN-LGGEVGCM-ISEGPWIFIG-VTNFVKA-WNTQTNTDL-SLSGPVGQVYAMAVGNDLLFA 244 (308)
Q Consensus 170 ~dg~v~~wd~~~~~~~~~~~-~~~~v~~~-~~~~~~l~~~-~d~~i~~-wd~~~~~~~-~~~~~~~~v~~~~~~~~~l~~ 244 (308)
..|.+.+-|.++|+.+..+. .+.....+ .|..+.++.+ .|.++.+ |-.-.+-.. ..+....+..-+.--.-.+++
T Consensus 896 SnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~ 975 (1034)
T KOG4190|consen 896 SNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVT 975 (1034)
T ss_pred cCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEE
Confidence 99999999999999887776 33332223 4666777744 4888888 865555443 333333222211111115666
Q ss_pred EcCCCeEEEEE
Q 021744 245 GTQDGAILAWK 255 (308)
Q Consensus 245 g~~dg~i~iwd 255 (308)
......+.+|.
T Consensus 976 a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 976 AQNGNILGVYA 986 (1034)
T ss_pred eccCcEEEEEe
Confidence 66667778875
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=5.8e-08 Score=78.85 Aligned_cols=154 Identities=10% Similarity=0.084 Sum_probs=107.4
Q ss_pred eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC----ceeeeEeeCcccceEE
Q 021744 81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG----FKLLTQLEGHQKVVSG 155 (308)
Q Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~----~~~~~~~~~h~~~v~~ 155 (308)
++.+.+..|-+-|++++.. .....+..|....|...+.. ..|+.+|.|..+|++.+ ......+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~---qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ---QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc---cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 7777788888889887732 22224445777888776655 77889999999999865 23444554 8999999
Q ss_pred EEEeC-CCCEEEEeeCCCcEEEEeCCCCeE---EEEEe-CCCe---eEE-EEcCCCEEEE-EcCCcEEEEEcCCCcee-e
Q 021744 156 ITLPS-GSDKLYSGSKDETVRVWDCASGQC---AGVIN-LGGE---VGC-MISEGPWIFI-GVTNFVKAWNTQTNTDL-S 224 (308)
Q Consensus 156 ~~~~~-~~~~l~s~s~dg~v~~wd~~~~~~---~~~~~-~~~~---v~~-~~~~~~~l~~-~~d~~i~~wd~~~~~~~-~ 224 (308)
+..-. ++++|++.+.+|+|++||++.-++ +.++. |-.. +.. +-+.+..+++ |.|...++|.++.+.++ +
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 98776 788999999999999999998776 66665 2111 111 1234455554 55889999999999887 3
Q ss_pred eeC----CCCCEEEEEEe
Q 021744 225 LSG----PVGQVYAMAVG 238 (308)
Q Consensus 225 ~~~----~~~~v~~~~~~ 238 (308)
+.- .+..+.++++.
T Consensus 384 ipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCCCCccccccccceehh
Confidence 332 22245555554
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.74 E-value=6.8e-05 Score=61.22 Aligned_cols=207 Identities=11% Similarity=0.059 Sum_probs=127.1
Q ss_pred eeEEec-CCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeee-cCCceEEeeCCCeEEEEEcCCCceeeeEee
Q 021744 71 AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQLE 147 (308)
Q Consensus 71 ~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 147 (308)
.+.|.+ ++.+ ++--..+.|..|+..+++........ ...+.+. +++.++.+...+. .++|+.++ +......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g-~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSGGI-AVVDPDTG-KVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETTCE-EEEETTTT-EEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcCce-EEEecCCC-cEEEEee
Confidence 357777 5666 77778899999998766432211111 4555565 6666666665444 55598887 3322222
Q ss_pred C-----cccceEEEEEeCCCCEEEEeeCC--------CcEEEEeCCCCeEEEEEeC-C-CeeEEEEcCCCEEEEE-c-CC
Q 021744 148 G-----HQKVVSGITLPSGSDKLYSGSKD--------ETVRVWDCASGQCAGVINL-G-GEVGCMISEGPWIFIG-V-TN 210 (308)
Q Consensus 148 ~-----h~~~v~~~~~~~~~~~l~s~s~d--------g~v~~wd~~~~~~~~~~~~-~-~~v~~~~~~~~~l~~~-~-d~ 210 (308)
. .......++++|+|++.++.... |.|..++.. ++....... . ..-.++.++++.|++. + .+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 1 34567899999999977776654 557777777 554444432 2 2233557889887754 3 77
Q ss_pred cEEEEEcCCCc--ee---ee---eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744 211 FVKAWNTQTNT--DL---SL---SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H 279 (308)
Q Consensus 211 ~i~~wd~~~~~--~~---~~---~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~ 279 (308)
.|..+++.... .. .+ .......-.+++..+ +.++....+.|.+++.. + +.+..+......++. +
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G----~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G----KLLREIELPVPRPTNCA 231 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S----CEEEEEE-SSSSEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c----cEEEEEcCCCCCEEEEE
Confidence 89999886332 11 12 222234788999988 55555568899999988 4 556666544345555 9
Q ss_pred Ee-cCCCeEEE
Q 021744 280 FS-RDVTSLLG 289 (308)
Q Consensus 280 ~s-~d~~~l~~ 289 (308)
|. ++...|..
T Consensus 232 fgg~~~~~L~v 242 (246)
T PF08450_consen 232 FGGPDGKTLYV 242 (246)
T ss_dssp EESTTSSEEEE
T ss_pred EECCCCCEEEE
Confidence 95 66565553
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.69 E-value=1.5e-05 Score=64.59 Aligned_cols=208 Identities=13% Similarity=0.088 Sum_probs=121.5
Q ss_pred CCcEEEEECCCCCCcccccceeeeeeeee-eeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE
Q 021744 86 NNHSNNYRAGNSKNSNINNRAVIKTDILC-RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK 164 (308)
Q Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (308)
+++|..||..+++.+-............+ .....+.+++++.++.|+.||..++ +.+..+.. ...+...- ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG-~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG-KVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS-EEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC-CEEEEeec-ccccccee-eecccc
Confidence 67889999988765533221111111122 2234556677789999999999999 67766654 22222211 223456
Q ss_pred EEEeeCCCcEEEEeCCCCeEEEEE-eCCC---e---eEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC----
Q 021744 165 LYSGSKDETVRVWDCASGQCAGVI-NLGG---E---VGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ---- 231 (308)
Q Consensus 165 l~s~s~dg~v~~wd~~~~~~~~~~-~~~~---~---v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~---- 231 (308)
++.++.++.+..+|.++|+.+... .... . .......+..++++. ++.|..+|+++++.+ ........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999999985 4221 1 112233466666655 999999999999987 33332211
Q ss_pred -------EEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEEEEecCCCeEEEee-ceEEEEeecCc
Q 021744 232 -------VYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSV-SFIMFIGQNNK 302 (308)
Q Consensus 232 -------v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~s~-s~~i~~~~~~~ 302 (308)
...+.+..+.++.++.++.+.-+|+.++ +.+.... ..........++..|+... +..++.+....
T Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg----~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 159 ISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATG----EKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTT----EEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred eeeecccccceEEECCEEEEEcCCCeEEEEECCCC----CEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 1334444446666777775433499997 3222221 2222222456666666443 56666655333
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.7e-07 Score=75.25 Aligned_cols=247 Identities=12% Similarity=0.046 Sum_probs=153.6
Q ss_pred CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccC-CCcEEEEECCCCCCccc
Q 021744 27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNF-NNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~-d~~i~vwd~~~~~~~~~ 102 (308)
..+.++|.|+.++.|....-+ -.......+.|... .++.+.++.. .|.+. |..+|++|+++-.....
T Consensus 21 ~fiiqASlDGh~KFWkKs~is---------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm 91 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRIS---------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM 91 (558)
T ss_pred heEEeeecchhhhhcCCCCcc---------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence 468999999999999754310 01222334455555 7889999999 88777 99999999976654422
Q ss_pred ccceeeeeeeeeeeecCC---ce-EEeeCCCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744 103 NNRAVIKTDILCRNWVQG---NC-MYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~---~~-~~g~~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w 177 (308)
.....--....+..++.. .. ++.-+++.+.++|-.... +....-+-|..+|..+.+++.+..++|....|.|..|
T Consensus 92 iKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyW 171 (558)
T KOG0882|consen 92 IKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYW 171 (558)
T ss_pred cccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEee
Confidence 111111111122222221 22 455678999999987553 3334445699999999999999999999999999999
Q ss_pred eCCC-CeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744 178 DCAS-GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (308)
Q Consensus 178 d~~~-~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i 253 (308)
..+. .+.... + .-|.++...-+ .+.-......++.|+|+ .+.+-+.|..|++
T Consensus 172 s~e~~~qfPr~--------------~----------l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 172 SAEGPFQFPRT--------------N----------LNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred cCCCcccCccc--------------c----------ccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 9773 111100 0 01222222222 22233456778889988 7777778999999
Q ss_pred EEcCCCCcc----------------------------cccceeccccCCCe--EEEEecCCCeEEEee--ceEEEEeecC
Q 021744 254 WKFNVTTNC----------------------------FEPAASLKVHTDSN--RAHFSRDVTSLLGSV--SFIMFIGQNN 301 (308)
Q Consensus 254 wd~~~~~~~----------------------------~~~~~~~~~~~~~v--~~~~s~d~~~l~~s~--s~~i~~~~~~ 301 (308)
+++.+++.. ...-+.++.|...+ +..|...|.+|+-.. .+.++...+|
T Consensus 228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn 307 (558)
T KOG0882|consen 228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTN 307 (558)
T ss_pred EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecC
Confidence 988876420 00001222344333 338888899888443 6667777776
Q ss_pred ceeEE
Q 021744 302 KGVVC 306 (308)
Q Consensus 302 ~~~~~ 306 (308)
.-+..
T Consensus 308 ~v~ri 312 (558)
T KOG0882|consen 308 TVVRI 312 (558)
T ss_pred eEEEE
Confidence 65543
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.59 E-value=4.5e-06 Score=65.93 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=106.5
Q ss_pred ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCCCeEEEEEeCC---CeeEE
Q 021744 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLG---GEVGC 196 (308)
Q Consensus 121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~---~~v~~ 196 (308)
.++.|+..|...+|...+....++....|...|+-+.=.-+ ...+..++.|.++++.++.-+......... .....
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~ 165 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH 165 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence 33678899999999999774445544445444332221111 234777889999999988754332222211 12223
Q ss_pred EEcCCCEEEE-EcCCcEEEEEcCCCcee----eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcc-ccccee
Q 021744 197 MISEGPWIFI-GVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC-FEPAAS 268 (308)
Q Consensus 197 ~~~~~~~l~~-~~d~~i~~wd~~~~~~~----~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~-~~~~~~ 268 (308)
++++++++++ |....|..|.+...... .....++.-.+..|+.. .+|++++||++.|||++....- .....+
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST 245 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc
Confidence 4678999885 55779999988765332 23344455677888876 9999999999999999875311 112223
Q ss_pred ccccCCCeEE-EEecCCC
Q 021744 269 LKVHTDSNRA-HFSRDVT 285 (308)
Q Consensus 269 ~~~~~~~v~~-~~s~d~~ 285 (308)
-..|.+.++. .|++.|.
T Consensus 246 rp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 246 RPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCCCCCceEEEEecCCCc
Confidence 3468888988 9998664
No 292
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=4.8e-05 Score=66.00 Aligned_cols=126 Identities=13% Similarity=0.211 Sum_probs=89.8
Q ss_pred CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE--EeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE-EcCCCEE
Q 021744 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY--SGSKDETVRVWDCASGQCAGVINLGGEVGCM-ISEGPWI 204 (308)
Q Consensus 128 d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~--s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l 204 (308)
+..+++.+++.. ...-.+. -.++|.++.|+|+++.++ -|-.=-.+.|+|++ +.++..+.....-+.+ .|.|+++
T Consensus 250 Eq~Lyll~t~g~-s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 250 EQTLYLLATQGE-SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNII 326 (566)
T ss_pred cceEEEEEecCc-eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEE
Confidence 357788887743 4444444 479999999999997764 44566789999988 6666666544444444 4678887
Q ss_pred EE-Ec---CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcC------CCeEEEEEcCC
Q 021744 205 FI-GV---TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQ------DGAILAWKFNV 258 (308)
Q Consensus 205 ~~-~~---d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~------dg~i~iwd~~~ 258 (308)
+. |. .|.+-+||..+.+++ .+.... -+-+.|+|| +|++++. |+.++||++..
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 74 43 579999999997777 454433 345889999 7776664 78899999875
No 293
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=5.3e-07 Score=50.57 Aligned_cols=32 Identities=28% Similarity=0.618 Sum_probs=30.7
Q ss_pred eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744 224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (308)
Q Consensus 224 ~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd 255 (308)
.+.+|...|++|+|+|+ +|++++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 78899999999999999 999999999999997
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=4.8e-05 Score=66.03 Aligned_cols=223 Identities=9% Similarity=-0.009 Sum_probs=132.3
Q ss_pred ccccc-eeEEecCCCe-eeccCC-----------CcEEEEECCCCCCcccccceeee-e-eeeeeeecCCceEEeeCCCe
Q 021744 66 ANGAA-AKRFANNTWG-RNNNFN-----------NHSNNYRAGNSKNSNINNRAVIK-T-DILCRNWVQGNCMYGEKCKF 130 (308)
Q Consensus 66 gh~~~-~i~~s~~g~~-~s~~~d-----------~~i~vwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~d~~ 130 (308)
.|.+- -+.|||..+| +|-+.- ..++|||+.+|............ . -....++.++.+.+.-....
T Consensus 248 ~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s 327 (698)
T KOG2314|consen 248 YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS 327 (698)
T ss_pred cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce
Confidence 34444 6889999998 776532 56899999988654332221111 1 23457788887755444588
Q ss_pred EEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC-----CcEEEEeCCCCeEEEEEeCCCeeEE--EE-cCCC
Q 021744 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGGEVGC--MI-SEGP 202 (308)
Q Consensus 131 i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~v~~wd~~~~~~~~~~~~~~~v~~--~~-~~~~ 202 (308)
|.||+...- .++..-.-....|....|+|.++.||--... ..+.+-.+.+++.+++-+.-....| .+ .+|.
T Consensus 328 isIyEtpsf-~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 328 ISIYETPSF-MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred EEEEecCce-eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence 999987653 2222211234678889999998777644332 2455666666666655442211112 22 5677
Q ss_pred EEEEEcC--------C---cEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EE--EEEc-CCCeEEEEEcCCCCccccc
Q 021744 203 WIFIGVT--------N---FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LL--FAGT-QDGAILAWKFNVTTNCFEP 265 (308)
Q Consensus 203 ~l~~~~d--------~---~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l--~~g~-~dg~i~iwd~~~~~~~~~~ 265 (308)
+|+.-.| | .+.++.++..... ....-...|...+|-|. .+ ++|. ...++.+|.+++...-.++
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 8775321 1 3445555554433 23334568889999987 33 3332 2456899998853322355
Q ss_pred ceeccccCCCeEE-EEecCCCeEEEee
Q 021744 266 AASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 266 ~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
+..+.. ...+. .|+|.|+++++++
T Consensus 487 Vk~~dk--~~~N~vfwsPkG~fvvva~ 511 (698)
T KOG2314|consen 487 VKELDK--KFANTVFWSPKGRFVVVAA 511 (698)
T ss_pred hhhhcc--cccceEEEcCCCcEEEEEE
Confidence 666653 44555 8999999998654
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.45 E-value=0.00055 Score=56.42 Aligned_cols=227 Identities=11% Similarity=0.037 Sum_probs=135.8
Q ss_pred CCccccccceeEEecCCCe--eeccCCCc-EEEEECCCCCCcccccceeee-eeeeeeeecCCceEEee------CCCeE
Q 021744 62 PAATANGAAAKRFANNTWG--RNNNFNNH-SNNYRAGNSKNSNINNRAVIK-TDILCRNWVQGNCMYGE------KCKFL 131 (308)
Q Consensus 62 ~~~~gh~~~~i~~s~~g~~--~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~------~d~~i 131 (308)
.|.++| .++.+|.... +.+-.-|+ ..+||..+++........... ..--..|+++|..++.. ..|.|
T Consensus 3 lP~RgH---~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 3 LPARGH---GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred CCcccc---ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence 345677 4788885555 77777776 588999888765322211111 12345789999774433 36899
Q ss_pred EEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee------------------CCCcEEEEeCCCCeEEEEEeC---
Q 021744 132 HSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS------------------KDETVRVWDCASGQCAGVINL--- 190 (308)
Q Consensus 132 ~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------------------~dg~v~~wd~~~~~~~~~~~~--- 190 (308)
-|||.....+.+.++..|--....+.+.||++.|+.+- .+-++.+-|..+|+.+.+...
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 99999955478888888777778889999997776653 123455556777777766542
Q ss_pred --CCeeEEE--EcCCCEEEEEc-CC-------cEEEEEcCCC-ceee-----eeCCCCCEEEEEEeCC---EEEEEcCCC
Q 021744 191 --GGEVGCM--ISEGPWIFIGV-TN-------FVKAWNTQTN-TDLS-----LSGPVGQVYAMAVGND---LLFAGTQDG 249 (308)
Q Consensus 191 --~~~v~~~--~~~~~~l~~~~-d~-------~i~~wd~~~~-~~~~-----~~~~~~~v~~~~~~~~---~l~~g~~dg 249 (308)
.-.+.-+ ..+|..++... .+ -|-+++.... +... ...-...+-+|+++++ ..+++-.-+
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 2223333 23444444321 11 1233332221 0111 1223468899999988 456666788
Q ss_pred eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEe
Q 021744 250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIG 298 (308)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~ 298 (308)
.+.+||..++ +.+.... -..++. +-.+++ ++++++...++..
T Consensus 240 ~~~~~d~~tg----~~~~~~~--l~D~cGva~~~~~-f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 240 RVAVWDAATG----RLLGSVP--LPDACGVAPTDDG-FLVSSGQGQLIRL 282 (305)
T ss_pred EEEEEECCCC----CEeeccc--cCceeeeeecCCc-eEEeCCCccEEEc
Confidence 9999999997 4444332 223333 444554 7777775554443
No 296
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.40 E-value=7.8e-06 Score=65.95 Aligned_cols=191 Identities=10% Similarity=0.145 Sum_probs=121.5
Q ss_pred eeeeeeeecCCce-EEeeCCCeEEEEEcCCCc----eeeeEeeCcc------------cceEEEEEeCCC--CEEEEeeC
Q 021744 110 TDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF----KLLTQLEGHQ------------KVVSGITLPSGS--DKLYSGSK 170 (308)
Q Consensus 110 ~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~----~~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~s~ 170 (308)
.+..+.|-..|.+ ++|...|.|.+|.-.... +....+++|. ..|..+.|-.++ ..++..+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 3777888888877 778888999999865432 2334455554 467888886543 45777789
Q ss_pred CCcEEEEeCCCCeE-------------------EE--------EEe-----------------CCCeeEEEE--cCCCEE
Q 021744 171 DETVRVWDCASGQC-------------------AG--------VIN-----------------LGGEVGCMI--SEGPWI 204 (308)
Q Consensus 171 dg~v~~wd~~~~~~-------------------~~--------~~~-----------------~~~~v~~~~--~~~~~l 204 (308)
|++|++|.+..... +. .+. |...+.+++ ++.+.+
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~ 187 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETL 187 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhee
Confidence 99999997754310 00 000 111222232 355667
Q ss_pred EEEcCCcEEEEEcCCC----ceeeeeCCC-----CCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceecc--
Q 021744 205 FIGVTNFVKAWNTQTN----TDLSLSGPV-----GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLK-- 270 (308)
Q Consensus 205 ~~~~d~~i~~wd~~~~----~~~~~~~~~-----~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-- 270 (308)
+++.|=.|.+|++.-- ..+.++.|. .-|++..|+|. .+.-.+..|.|++-|++....+..+...+.
T Consensus 188 lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~ 267 (460)
T COG5170 188 LSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELT 267 (460)
T ss_pred eeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhc
Confidence 7777889999988643 222444444 36889999998 677778899999999985432212222111
Q ss_pred ----------ccCCCeEE-EEecCCCeEEEee--ceEEEEeec
Q 021744 271 ----------VHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQN 300 (308)
Q Consensus 271 ----------~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~~ 300 (308)
.-...|+. .|++.|+++++-. ++.||-..+
T Consensus 268 ~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm 310 (460)
T COG5170 268 IDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNM 310 (460)
T ss_pred cCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccc
Confidence 11235666 8999999998655 666665543
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.40 E-value=1.2e-05 Score=64.84 Aligned_cols=215 Identities=9% Similarity=0.102 Sum_probs=118.2
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--------------eeEEe-cCCCe--eeccCCC
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--------------AKRFA-NNTWG--RNNNFNN 87 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--------------~i~~s-~~g~~--~s~~~d~ 87 (308)
.|.+++||...|.|-++.-... ..|.+.. ...+++|+.. .+.|- +.+.. +..+.|+
T Consensus 37 tg~YlatGDkgGRVvlfer~~s--~~ceykf-----~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdk 109 (460)
T COG5170 37 TGLYLATGDKGGRVVLFEREKS--YGCEYKF-----FTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDK 109 (460)
T ss_pred ccceEeecCCCceEEEeecccc--cccchhh-----hhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCc
Confidence 3678999999999999875432 2344311 1112222111 45554 44443 7888999
Q ss_pred cEEEEECCCCC-------------------C------ccccc-----------------ceeeeeeeeeeeecCCceEEe
Q 021744 88 HSNNYRAGNSK-------------------N------SNINN-----------------RAVIKTDILCRNWVQGNCMYG 125 (308)
Q Consensus 88 ~i~vwd~~~~~-------------------~------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~g 125 (308)
+|++|.+-... + +..+. ..|.-.+.++.+..+......
T Consensus 110 tiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lS 189 (460)
T COG5170 110 TIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLS 189 (460)
T ss_pred eeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeee
Confidence 99999883220 0 00000 111222444555555555556
Q ss_pred eCCCeEEEEEcCCCce--eeeEeeCc-----ccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE
Q 021744 126 EKCKFLHSWTVGDGFK--LLTQLEGH-----QKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM 197 (308)
Q Consensus 126 ~~d~~i~iwd~~~~~~--~~~~~~~h-----~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~ 197 (308)
..|-.|.+|++.-... .+-.++.| +.-|++..|+|.. ..+.-.+..|.|++-|++....-
T Consensus 190 aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc------------ 257 (460)
T COG5170 190 ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC------------ 257 (460)
T ss_pred ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc------------
Confidence 7788899998864311 12233334 3467888888864 45566667788999888743211
Q ss_pred EcCCCEEEEEcCCcEEEEEcCCCc-ee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744 198 ISEGPWIFIGVTNFVKAWNTQTNT-DL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH 272 (308)
Q Consensus 198 ~~~~~~l~~~~d~~i~~wd~~~~~-~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 272 (308)
|..-+++...-.. .. -+.+-...|..+.|+++ .++.+-.--+|+|||++..+ .++.++.-|
T Consensus 258 -----------dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k---~pikTi~~h 321 (460)
T COG5170 258 -----------DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK---NPIKTIPMH 321 (460)
T ss_pred -----------cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc---CCceeechH
Confidence 1111111100000 00 12223456788899998 44444555689999998764 566666443
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=7.8e-05 Score=67.51 Aligned_cols=189 Identities=10% Similarity=-0.048 Sum_probs=128.9
Q ss_pred CCCceeEEEeecCCCCCCC----------CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEe
Q 021744 6 HGGNKRVFHRLGGGGGDGG----------GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFA 75 (308)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~----------~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s 75 (308)
+|-+|.-|.|+++....-- ....++-|+-+|.+++.+.+.. + ....-|.. -.
T Consensus 19 deePklkY~Ri~n~~~~~~~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~------------~--~~~~~~s~----~~ 80 (846)
T KOG2066|consen 19 DEEPKLKYERISNLVKNFLQNDAISCCAVHDKFFALGTHRGAVYLTTCQGN------------P--KTNFDHSS----SI 80 (846)
T ss_pred ccCccceehhhhcccHHHHhhhHHHHHHhhcceeeeccccceEEEEecCCc------------c--cccccccc----cc
Confidence 5666778888877733211 1456777888888888876644 1 11111111 14
Q ss_pred cCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecC------CceEEeeCCCeEEEEEcC--CCceeeeEe
Q 021744 76 NNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQ------GNCMYGEKCKFLHSWTVG--DGFKLLTQL 146 (308)
Q Consensus 76 ~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~d~~i~iwd~~--~~~~~~~~~ 146 (308)
-+|.+ +||+.||+|.|-.+-+.+.. ........+..+++.|+ +.+++|+.-| +.++.-+ .. +....+
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~--~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v~l 156 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEI--TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSVVL 156 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccc--eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccceee
Confidence 56889 99999999999998766554 33445566888888887 2458898888 7776533 11 111245
Q ss_pred eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC--------eeEEEEcCCCEEEEEcCCcEEEEEcC
Q 021744 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--------EVGCMISEGPWIFIGVTNFVKAWNTQ 218 (308)
Q Consensus 147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~--------~v~~~~~~~~~l~~~~d~~i~~wd~~ 218 (308)
....++|.++.|. |+++|-++.+| |++||..+++.+..++.+. +..-.|.+...|+.|-..+|++..++
T Consensus 157 ~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 157 SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred ecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 5567899999997 56777777766 9999999999888877322 11223667888899988888888887
Q ss_pred C
Q 021744 219 T 219 (308)
Q Consensus 219 ~ 219 (308)
.
T Consensus 234 ~ 234 (846)
T KOG2066|consen 234 K 234 (846)
T ss_pred c
Confidence 3
No 299
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.36 E-value=0.00023 Score=60.96 Aligned_cols=158 Identities=12% Similarity=0.069 Sum_probs=108.2
Q ss_pred CCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCC-eEEEEEcCCCceeeeEeeCcccce
Q 021744 77 NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCK-FLHSWTVGDGFKLLTQLEGHQKVV 153 (308)
Q Consensus 77 ~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~-~i~iwd~~~~~~~~~~~~~h~~~v 153 (308)
+|.+ +..|..+ ..|.+...+-. ...++...+....+..++.. +.|..|| .+-|+|..++. ++.+...-+.|
T Consensus 331 ~Gd~ia~VSRGk-aFi~~~~~~~~---iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I 404 (668)
T COG4946 331 NGDYIALVSRGK-AFIMRPWDGYS---IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNI 404 (668)
T ss_pred CCcEEEEEecCc-EEEECCCCCee---EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccce
Confidence 4556 5555544 44443322211 22334445777777766655 8888888 89999999883 45566677899
Q ss_pred EEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-C----CcEEEEEcCCCceeee
Q 021744 154 SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-T----NFVKAWNTQTNTDLSL 225 (308)
Q Consensus 154 ~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d----~~i~~wd~~~~~~~~~ 225 (308)
.++..+++|++++.+.....+.+.|+.++.....-+ ..+-+..+ +++.+++|-+. + ..|+++|+.+++....
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 999999999999999988999999999987654444 33445544 57788888654 4 4799999999887754
Q ss_pred eCCCCCEEEEEEeCC
Q 021744 226 SGPVGQVYAMAVGND 240 (308)
Q Consensus 226 ~~~~~~v~~~~~~~~ 240 (308)
......=.+-+|.|+
T Consensus 485 TT~ta~DfsPaFD~d 499 (668)
T COG4946 485 TTPTAYDFSPAFDPD 499 (668)
T ss_pred cCCcccccCcccCCC
Confidence 444333345556665
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.34 E-value=3.1e-06 Score=66.52 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=100.8
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE-EEEEe---CCCeeEEEEcCCCEEEEEc------CCcE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVIN---LGGEVGCMISEGPWIFIGV------TNFV 212 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~-~~~~~---~~~~v~~~~~~~~~l~~~~------d~~i 212 (308)
.+.+..|+++-.+-+.+--++-++++..||.+.+.+.+.-.. ...+. ....-.+....++++.++. -+..
T Consensus 82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 444444443333333333456799999999999998775211 11111 1122223345566666543 3355
Q ss_pred EEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC-CCe
Q 021744 213 KAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD-VTS 286 (308)
Q Consensus 213 ~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d-~~~ 286 (308)
+.|+++..+.. .-......|.+++-+|. .+++|++||.+-+||.+... -+...+..|...++- .|.|. +..
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchh
Confidence 67777654433 11112234999999987 89999999999999999873 566778899999999 99984 455
Q ss_pred EE-EeeceEEEEeecCc
Q 021744 287 LL-GSVSFIMFIGQNNK 302 (308)
Q Consensus 287 l~-~s~s~~i~~~~~~~ 302 (308)
|+ ++.+..+|-|..+.
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 65 45588999888764
No 301
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.30 E-value=0.0003 Score=60.63 Aligned_cols=195 Identities=8% Similarity=-0.025 Sum_probs=112.5
Q ss_pred CcEEEEECCCCCCcccccceeee-eee-eeeeecCCceEEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEEEEEeCC
Q 021744 87 NHSNNYRAGNSKNSNINNRAVIK-TDI-LCRNWVQGNCMYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPSG 161 (308)
Q Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~~~ 161 (308)
+.+.+||..++..+......... ... .+.|+.+..++.---...++|+++ +.. ...+.++ ...|....|+|.
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~ 184 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPE 184 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcc--ccceeeEEecCC
Confidence 35999999888755332222111 133 566777765522223456889997 331 1122222 367888889986
Q ss_pred CC--EEEE-----eeCCCcEEEEeCCCCeEEEEEe--CCCeeEE-EEcCCCEEEEE------------cCCcEEEEEcCC
Q 021744 162 SD--KLYS-----GSKDETVRVWDCASGQCAGVIN--LGGEVGC-MISEGPWIFIG------------VTNFVKAWNTQT 219 (308)
Q Consensus 162 ~~--~l~s-----~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~-~~~~~~~l~~~------------~d~~i~~wd~~~ 219 (308)
++ .|+. ....+++++|.+..+..+.+-. .-..+.- .-+.|++|++- ....+++++++.
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 43 2332 3567789999888666554433 1111111 12445554421 134678888885
Q ss_pred CceeeeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 220 NTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 220 ~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
........-.++|...+|.|. -+++|-.+-.+.++|++.. .. +......-+. .|+|.+++++..+
T Consensus 265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~--~~~Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LR--FYFPEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred cccceeccccccceeeeecccCCceeEEecccccceeecccccc-----eE--EecCCcccccccccCcccEEEEec
Confidence 554433366889999999887 3455567888999998873 11 1222233333 6777777776544
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=3.8e-05 Score=69.45 Aligned_cols=166 Identities=10% Similarity=0.035 Sum_probs=115.3
Q ss_pred CCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE
Q 021744 119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI 198 (308)
Q Consensus 119 ~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~ 198 (308)
+...+.|..+|.|++++.... + .+...|... +.+|++++|||.||+|.+-.+-+.+...++....++.++.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksia 119 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIA 119 (846)
T ss_pred cceeeeccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEE
Confidence 334578999999999998654 2 344445544 6689999999999999999999998888888777777663
Q ss_pred --cC-----CCEEEEEc-CCcEEEEEcCCCc---eeeeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccce
Q 021744 199 --SE-----GPWIFIGV-TNFVKAWNTQTNT---DLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAA 267 (308)
Q Consensus 199 --~~-----~~~l~~~~-d~~i~~wd~~~~~---~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 267 (308)
|+ .+.+++|+ .| +.++.-+-.. ...+....++|.++.|..+++|-++++ -|++||.... +.+.
T Consensus 120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~-Gv~vyd~~~~----~~l~ 193 (846)
T KOG2066|consen 120 LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDD-GVKVYDTPTR----QRLT 193 (846)
T ss_pred eccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCC-CcEEEecccc----ceee
Confidence 43 34566666 55 7776543222 224566678999999999988888766 4899999986 3344
Q ss_pred eccccCCC------eEE-EEecCCCeEEEee-ceEEEEee
Q 021744 268 SLKVHTDS------NRA-HFSRDVTSLLGSV-SFIMFIGQ 299 (308)
Q Consensus 268 ~~~~~~~~------v~~-~~s~d~~~l~~s~-s~~i~~~~ 299 (308)
.++..... ... .|.++.+++.+-+ ++.|+...
T Consensus 194 ~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 194 NIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred ccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 44322222 223 7777777666544 56666555
No 303
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.27 E-value=0.00091 Score=57.77 Aligned_cols=240 Identities=8% Similarity=-0.026 Sum_probs=139.8
Q ss_pred CCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceee-eee
Q 021744 35 QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVI-KTD 111 (308)
Q Consensus 35 d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~ 111 (308)
+..+.+||..++. ++........ ....+ -+.|+-+.++ |=- ....+.|+++ ++.....+....+ ..+
T Consensus 107 ~n~~~vwd~~sg~-----iv~sf~~~~q---~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 107 KNNVFVWDIASGM-----IVFSFNGISQ---PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI 176 (561)
T ss_pred cCceeEEeccCce-----eEeeccccCC---cccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence 3468999987761 1111111111 12234 6789999988 333 4556999997 4433222222222 235
Q ss_pred eeeeeecCCce---E-----EeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee-----------CCC
Q 021744 112 ILCRNWVQGNC---M-----YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-----------KDE 172 (308)
Q Consensus 112 ~~~~~~~~~~~---~-----~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-----------~dg 172 (308)
....++|.+.. + ..+....+++|.+..+ ..+.+..--+..=..+.|++.+++++.-- ...
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC-CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence 55666666422 1 2677889999999855 33332221223335678888887754321 124
Q ss_pred cEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEE--EEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEE
Q 021744 173 TVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIF--IGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAG 245 (308)
Q Consensus 173 ~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~--~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g 245 (308)
.+.|++++...+.......++|-.+ .|.++.++ +|. .-.+.++|++.. +.+......-+.+.|+|. +++.+
T Consensus 256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~a 333 (561)
T COG5354 256 NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFA 333 (561)
T ss_pred eEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEe
Confidence 5677777633222222345666655 25555444 344 779999999987 545555666677889998 66665
Q ss_pred cC---CCeEEEEEcCCCCcccccceeccccCCCeEEEEecCCCeEEEee
Q 021744 246 TQ---DGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSV 291 (308)
Q Consensus 246 ~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~s~ 291 (308)
+- .|.+.+||.... +..+..+.+. +.-.|.|+||++++..+.
T Consensus 334 gF~nl~gni~i~~~~~r---f~~~~~~~~~-n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 334 GFDNLQGNIEIFDPAGR---FKVAGAFNGL-NTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred cCCccccceEEeccCCc---eEEEEEeecC-CceEeeccCCceEEEecC
Confidence 54 467999998875 2344344432 233348999999987554
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.25 E-value=0.00085 Score=54.76 Aligned_cols=196 Identities=12% Similarity=0.042 Sum_probs=116.9
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEe-cCCCeeeccCCCcEEEEECCCCCCcccc
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFA-NNTWGRNNNFNNHSNNYRAGNSKNSNIN 103 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s-~~g~~~s~~~d~~i~vwd~~~~~~~~~~ 103 (308)
.+.++.+....+.|..|+...+. .......+ ...+++. +++..+.+..++ +.++|..+++.....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~-----------~~~~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGE-----------VEVIDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTE-----------EEEEESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCe-----------EEEEecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEe
Confidence 46778888888999999987761 00000001 1157777 666555555544 566698777432211
Q ss_pred cc---e-eeeeeeeeeeecCCce-EEeeCC--------CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE-Eee
Q 021744 104 NR---A-VIKTDILCRNWVQGNC-MYGEKC--------KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGS 169 (308)
Q Consensus 104 ~~---~-~~~~~~~~~~~~~~~~-~~g~~d--------~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s 169 (308)
.. . .......+.+.++|.+ ++.... +.|..++.. + +.. .+...-.....++|+|+++.|+ +-+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~-~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVT-VVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEE-EEEEEESSEEEEEEETTSSEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEE-EEecCcccccceEECCcchheeeccc
Confidence 11 1 2233777888999977 332222 567778877 4 332 2333456678999999998765 667
Q ss_pred CCCcEEEEeCCCC-e-E--EEEE-e--CCC-eeE--EEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEE
Q 021744 170 KDETVRVWDCASG-Q-C--AGVI-N--LGG-EVG--CMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAV 237 (308)
Q Consensus 170 ~dg~v~~wd~~~~-~-~--~~~~-~--~~~-~v~--~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~ 237 (308)
..+.|..+++... . . ...+ . ... ... ++-.+|++.++.. .+.|.++|.+ ++.+ .+......+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 7888999998632 2 1 1222 2 221 222 3346777766654 8899999988 6655 45544458999999
Q ss_pred e
Q 021744 238 G 238 (308)
Q Consensus 238 ~ 238 (308)
.
T Consensus 233 g 233 (246)
T PF08450_consen 233 G 233 (246)
T ss_dssp E
T ss_pred E
Confidence 5
No 305
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.23 E-value=0.00013 Score=64.15 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=54.2
Q ss_pred eeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE
Q 021744 107 VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~ 184 (308)
....+.+|+++|+... +.|+.||.|.+||...+. ..+....-.++.++|+|+|..++.|+..|.+.+||+.-...
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~---t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV---TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCe---eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 3444778888888755 788888888888887652 22222345567888888888888888888888888775433
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.21 E-value=3e-05 Score=71.04 Aligned_cols=170 Identities=12% Similarity=0.120 Sum_probs=114.1
Q ss_pred eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEe
Q 021744 81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLP 159 (308)
Q Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~ 159 (308)
+-|+....+..+|+.+.+.......... .+..++. .++. ..|...|+|.+-|+++. +.++++..|++.|.++...
T Consensus 151 i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSDfDv~ 226 (1118)
T KOG1275|consen 151 IMGGLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRY--NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISDFDVQ 226 (1118)
T ss_pred eecchhhheeeeecccceeeeeeeccCC-ceEEEEe--cCcEEEeecccceEEeecCCcC-ceeeeeeccccceeeeecc
Confidence 6666667777788866543321111111 1332222 2333 67888999999999998 8999999999999887764
Q ss_pred CCCCEEEEeeC---------CCcEEEEeCCCCeEEEEEeCC-C-eeEEEEcC--CCEEEEEcCCcEEEEEcCCC-ce--e
Q 021744 160 SGSDKLYSGSK---------DETVRVWDCASGQCAGVINLG-G-EVGCMISE--GPWIFIGVTNFVKAWNTQTN-TD--L 223 (308)
Q Consensus 160 ~~~~~l~s~s~---------dg~v~~wd~~~~~~~~~~~~~-~-~v~~~~~~--~~~l~~~~d~~i~~wd~~~~-~~--~ 223 (308)
|++|++|+. |.-|++||++.-+.+..+... . ....+.|. .+.++++..|+..+-|..+. .+ -
T Consensus 227 --GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~ 304 (1118)
T KOG1275|consen 227 --GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG 304 (1118)
T ss_pred --CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccc
Confidence 789999985 556899999987776666522 2 22223333 34444556899998884332 11 1
Q ss_pred --eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744 224 --SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (308)
Q Consensus 224 --~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~ 256 (308)
.+......+..++++++ .++.|..+|.|.+|.-
T Consensus 305 ~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 305 VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 22223445899999988 9999999999999983
No 307
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=9.3e-05 Score=64.35 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=118.5
Q ss_pred eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeC-----------CCcEEEEeC
Q 021744 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----------DETVRVWDC 179 (308)
Q Consensus 111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----------dg~v~~wd~ 179 (308)
-..+.|+|.|.+++.-.-.-|.+|--.+- ..++.+. |+ .|.-+.|+|..++|+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f-~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESF-DRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccH-HHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 66789999999988888888999976655 4555554 54 5788999999999998764 257899999
Q ss_pred CCCeEEEEEeC---CCe---eEEEEcCCCEEEEEcCCcEEEEEcCCCceeeee-CCCCCEEEEEEeCC--EEEEEcC--C
Q 021744 180 ASGQCAGVINL---GGE---VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGND--LLFAGTQ--D 248 (308)
Q Consensus 180 ~~~~~~~~~~~---~~~---v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~-~~~~~v~~~~~~~~--~l~~g~~--d 248 (308)
.+|...+.+.. ... +...+.|++++|--....|.+|+..+..++..+ -.-..|....|+|. +||-=+. +
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 99999988873 222 223357899998655688999998876665222 23456888999998 4443221 1
Q ss_pred ---CeEEEEEcCCCCcccccceeccccCC-CeEEEEecCCCeEEEe
Q 021744 249 ---GAILAWKFNVTTNCFEPAASLKVHTD-SNRAHFSRDVTSLLGS 290 (308)
Q Consensus 249 ---g~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~s~d~~~l~~s 290 (308)
-++.+..+.++ +.+++-.-+.- .+...|-.+|.+|..-
T Consensus 370 ~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 370 NIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred CCcceEEEEecCcc----ceeeeccceeeeccEEEeccCCcEEEEE
Confidence 24666666665 44444443322 2222777788887643
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.9e-05 Score=65.74 Aligned_cols=192 Identities=11% Similarity=0.035 Sum_probs=134.3
Q ss_pred eeeeeeeeeeeecCCceEEeeCCCeEEEEEcCC--CceeeeEeeCcccceEEEEEeCCCCEEEEeeC-CCcEEEEeCCCC
Q 021744 106 AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASG 182 (308)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~~ 182 (308)
.|...+.-|......-.++++.||.++.|-... +.+.+..+..|-..|.+++.+-++.++.|.+. |..++++|+++.
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 345555555555555568999999999998654 33566677789999999999999999999887 999999999987
Q ss_pred eEEEEEe---CCCeeEEEEcCC---CEEEEEc--CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCC--EEEEEcCCC
Q 021744 183 QCAGVIN---LGGEVGCMISEG---PWIFIGV--TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDG 249 (308)
Q Consensus 183 ~~~~~~~---~~~~v~~~~~~~---~~l~~~~--d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg 249 (308)
..+.-++ .++.+.++...| ..++++. ++.+.++|-....+. .-.-|..+|..+.+.+. .+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 6665444 455555555554 2455554 889999998876533 44568999999999987 788888899
Q ss_pred eEEEEEcCCCCcc--ccccee---------ccccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744 250 AILAWKFNVTTNC--FEPAAS---------LKVHTDSNRA-HFSRDVTSLLGSV-SFIMFI 297 (308)
Q Consensus 250 ~i~iwd~~~~~~~--~~~~~~---------~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~ 297 (308)
.|.-|.....-.. .+.... +........+ .|+|++..+..-. +..+++
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 9999998741000 011111 1122334455 9999999887544 444444
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.14 E-value=9.1e-05 Score=68.03 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=120.9
Q ss_pred ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEEc
Q 021744 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMIS 199 (308)
Q Consensus 121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~ 199 (308)
..+.|+.-..+..+|+++. +..+...-....|.-|.. +++++.+|...|+|.+-|.++.+.+.++. |.+.+..+.-
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~-~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTE-KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred ceeecchhhheeeeecccc-eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 3456666677778898887 444444433444666654 46799999999999999999999999998 8888888887
Q ss_pred CCCEEEEEc----------CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCccccc
Q 021744 200 EGPWIFIGV----------TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEP 265 (308)
Q Consensus 200 ~~~~l~~~~----------d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~ 265 (308)
.|+.|++++ |.-|+|||+|....+ .+.-+.++ .-+.|.|. .++.++..|...+-|..+-.+-..-
T Consensus 226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~ 304 (1118)
T KOG1275|consen 226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG 304 (1118)
T ss_pred cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccc
Confidence 788777542 345899999988766 33333333 44678887 8899999999999994332210012
Q ss_pred ceeccccCCCeEE-EEecCCCeEEEee---ceEEEE
Q 021744 266 AASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFI 297 (308)
Q Consensus 266 ~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~ 297 (308)
+..+......+.. .+|+.++.|+..- -+.+|.
T Consensus 305 ~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 305 VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2333344555777 9999999888443 344444
No 310
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.14 E-value=0.0053 Score=55.44 Aligned_cols=154 Identities=13% Similarity=0.119 Sum_probs=91.6
Q ss_pred eEEEEEcCCCceeeeEeeCcccceE------EEEEe----CCCC---EEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEE
Q 021744 130 FLHSWTVGDGFKLLTQLEGHQKVVS------GITLP----SGSD---KLYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196 (308)
Q Consensus 130 ~i~iwd~~~~~~~~~~~~~h~~~v~------~~~~~----~~~~---~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~ 196 (308)
.|.-+|++++ +.+..++.-..... ...+. -++. .++.++.+|.+...|.++|+.+........-..
T Consensus 257 ~l~Ald~~tG-~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~ 335 (488)
T cd00216 257 SIVALDADTG-KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMA 335 (488)
T ss_pred eEEEEcCCCC-CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccc
Confidence 7899999999 56655542111110 01111 1232 578888999999999999999987753211011
Q ss_pred EEcCCCEEEEE-------------------cCCcEEEEEcCCCcee-eeeCC--C------CC--EEEEEEeCCEEEEEc
Q 021744 197 MISEGPWIFIG-------------------VTNFVKAWNTQTNTDL-SLSGP--V------GQ--VYAMAVGNDLLFAGT 246 (308)
Q Consensus 197 ~~~~~~~l~~~-------------------~d~~i~~wd~~~~~~~-~~~~~--~------~~--v~~~~~~~~~l~~g~ 246 (308)
..+ ..++++ .++.+.-.|+.+++.+ +.... . .+ ...+....+.++.++
T Consensus 336 ~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~ 413 (488)
T cd00216 336 YDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA 413 (488)
T ss_pred cCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC
Confidence 111 222221 2578889999999887 32221 0 11 123445556888889
Q ss_pred CCCeEEEEEcCCCCcccccceeccccCCCeEE---EEecCCCeEEEee
Q 021744 247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA---HFSRDVTSLLGSV 291 (308)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~---~~s~d~~~l~~s~ 291 (308)
.||.|+.+|..++ +.+-+.+.. ..+.. .|..+++..+++.
T Consensus 414 ~dG~l~ald~~tG----~~lW~~~~~-~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 414 ADGYFRAFDATTG----KELWKFRTP-SGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred CCCeEEEEECCCC----ceeeEEECC-CCceEcCEEEEeCCEEEEEEE
Confidence 9999999999998 555555432 33333 3556776555443
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.13 E-value=0.0025 Score=51.31 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=106.4
Q ss_pred eeecCCceEEeeCCCeEEEEEcCCCc-eeeeEeeCcc---cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC
Q 021744 115 RNWVQGNCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQ---KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (308)
Q Consensus 115 ~~~~~~~~~~g~~d~~i~iwd~~~~~-~~~~~~~~h~---~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~ 190 (308)
....+|..+..-.|..|.|-..++.. ..+.+..-.+ ..=+.++|+||+.+||.+...|+|+++|+.. ..+..+..
T Consensus 4 ~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p 82 (282)
T PF15492_consen 4 ALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPP 82 (282)
T ss_pred eecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCc
Confidence 34566777777778888887766542 1222222222 2236799999999999999999999999885 44444441
Q ss_pred --------CCeeEEE-Ec--------CCCEEEEEcCCcEEEEEcCCC--c----ee--eee-CCCCCEEEEEEeCC---E
Q 021744 191 --------GGEVGCM-IS--------EGPWIFIGVTNFVKAWNTQTN--T----DL--SLS-GPVGQVYAMAVGND---L 241 (308)
Q Consensus 191 --------~~~v~~~-~~--------~~~~l~~~~d~~i~~wd~~~~--~----~~--~~~-~~~~~v~~~~~~~~---~ 241 (308)
...+..+ +. ..++|+....|.++-|-+..+ + .. .+. .+...|.++.++|. +
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL 162 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence 1122322 11 235667778887776654322 1 11 222 24678999999998 4
Q ss_pred EEEEcCCCe----------EEEEEcCCCCcccccceec------------------------c-ccCCCeEE-EEecCCC
Q 021744 242 LFAGTQDGA----------ILAWKFNVTTNCFEPAASL------------------------K-VHTDSNRA-HFSRDVT 285 (308)
Q Consensus 242 l~~g~~dg~----------i~iwd~~~~~~~~~~~~~~------------------------~-~~~~~v~~-~~s~d~~ 285 (308)
++.|+.... +..|.+-+..+-.+++... . .....|.- ..||||+
T Consensus 163 lVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~ 242 (282)
T PF15492_consen 163 LVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS 242 (282)
T ss_pred EEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC
Confidence 444444332 5667654433211111111 0 12334555 8899999
Q ss_pred eEEEee-ceEEEEe
Q 021744 286 SLLGSV-SFIMFIG 298 (308)
Q Consensus 286 ~l~~s~-s~~i~~~ 298 (308)
.|++.. ++.|.+|
T Consensus 243 ~La~ih~sG~lsLW 256 (282)
T PF15492_consen 243 LLACIHFSGSLSLW 256 (282)
T ss_pred EEEEEEcCCeEEEE
Confidence 998543 4444443
No 312
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.12 E-value=0.00016 Score=67.26 Aligned_cols=131 Identities=11% Similarity=0.120 Sum_probs=92.9
Q ss_pred CEEEE-eeCCCcEEEEeCCCCeEEEEEeCCC--eeEEEEcC-------CCEEEEE-cCCcEEEEEcCCCc--eee--e--
Q 021744 163 DKLYS-GSKDETVRVWDCASGQCAGVINLGG--EVGCMISE-------GPWIFIG-VTNFVKAWNTQTNT--DLS--L-- 225 (308)
Q Consensus 163 ~~l~s-~s~dg~v~~wd~~~~~~~~~~~~~~--~v~~~~~~-------~~~l~~~-~d~~i~~wd~~~~~--~~~--~-- 225 (308)
++|+. ......|+-.|++.|+.+..+.... ++..+.|+ ..-.+.| +++.+..||.|-.. ++. .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 44433 3456789999999999999999433 35666553 2233444 48899999998643 221 1
Q ss_pred eCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEE
Q 021744 226 SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFI 297 (308)
Q Consensus 226 ~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~ 297 (308)
........|++-+.+ +||.|+.+|.||+||--.. +....+.+-..+|.. ..+.||+|+++.|..-|.+
T Consensus 574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~----~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlL 643 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGK----RAKTALPGLGDPIIGIDVTADGKWILATCKTYLLL 643 (794)
T ss_pred cccCCCceEEEecCCceEEEEeCCCcEEeecccch----hhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEE
Confidence 123446788888888 9999999999999994332 444456677889999 9999999999998444433
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.11 E-value=0.0032 Score=52.00 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=124.7
Q ss_pred CceEEecCCC-eEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-ee-----ccCCCcEEEEECCCC-C
Q 021744 27 GLSTADTRQK-VCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RN-----NNFNNHSNNYRAGNS-K 98 (308)
Q Consensus 27 ~~~~s~s~d~-~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s-----~~~d~~i~vwd~~~~-~ 98 (308)
..+|-+-.-+ ...+||..++.. ......+....+.|| -.|||||++ .+ ....|.|-|||...+ +
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~----~~~~~a~~gRHFyGH----g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQL----LQRLWAPPGRHFYGH----GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCce----eeEEcCCCCCEEecC----EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 4455555544 556788877611 001112334455567 699999998 44 334578999999722 2
Q ss_pred CcccccceeeeeeeeeeeecCCc-eEEe------------------eCCCeEEEEEcCCCceeeeE--e--eCcccceEE
Q 021744 99 NSNINNRAVIKTDILCRNWVQGN-CMYG------------------EKCKFLHSWTVGDGFKLLTQ--L--EGHQKVVSG 155 (308)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g------------------~~d~~i~iwd~~~~~~~~~~--~--~~h~~~v~~ 155 (308)
.+ .....+.-....+.+.|++. ++.+ ..+..+...|..++ +++.+ + .-|+-.|..
T Consensus 90 ri-~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 90 RI-GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred EE-eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCccccccceee
Confidence 11 11122222245566777773 3221 22445566677777 55555 4 347889999
Q ss_pred EEEeCCCCEEEEeeCCCc-----EEEEeCCCCeEEEEEe--------CCCeeEEE--EcCCCEEEEEc--CCcEEEEEcC
Q 021744 156 ITLPSGSDKLYSGSKDET-----VRVWDCASGQCAGVIN--------LGGEVGCM--ISEGPWIFIGV--TNFVKAWNTQ 218 (308)
Q Consensus 156 ~~~~~~~~~l~s~s~dg~-----v~~wd~~~~~~~~~~~--------~~~~v~~~--~~~~~~l~~~~--d~~i~~wd~~ 218 (308)
+++.+++..++..-..|. -.+.-.+.++.+..+. ...-+.++ ..++.++++++ .+.+.+||..
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 999999887777665552 1122223333343333 22334444 45777888776 7799999999
Q ss_pred CCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEE
Q 021744 219 TNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAIL 252 (308)
Q Consensus 219 ~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~ 252 (308)
+++.+....- ..+..++..++ ++++.+. |.+.
T Consensus 248 tg~~~~~~~l-~D~cGva~~~~~f~~ssG~-G~~~ 280 (305)
T PF07433_consen 248 TGRLLGSVPL-PDACGVAPTDDGFLVSSGQ-GQLI 280 (305)
T ss_pred CCCEeecccc-CceeeeeecCCceEEeCCC-ccEE
Confidence 9998843322 24667777777 5665544 4433
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00068 Score=62.15 Aligned_cols=185 Identities=15% Similarity=0.232 Sum_probs=118.0
Q ss_pred ecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccc-eEEEEEeCCCCEEEEeeCCCc-----EEEEeCCCC------eE
Q 021744 117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV-VSGITLPSGSDKLYSGSKDET-----VRVWDCASG------QC 184 (308)
Q Consensus 117 ~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~dg~-----v~~wd~~~~------~~ 184 (308)
+..+..+.|+.+|.|.+.+- ..+.++.++.+... |..+-...+..+|++.++|+. +++|+++.- ++
T Consensus 33 s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred CCCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 34446688999999888763 32455778888777 555544444578888888764 899998742 33
Q ss_pred EEE---EeC-----CCeeEEE--EcCCCEEEEEc-CCcEEEEEcCC----Ccee-eeeCCCCCEEEEEEeCC--E-EEEE
Q 021744 185 AGV---INL-----GGEVGCM--ISEGPWIFIGV-TNFVKAWNTQT----NTDL-SLSGPVGQVYAMAVGND--L-LFAG 245 (308)
Q Consensus 185 ~~~---~~~-----~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~----~~~~-~~~~~~~~v~~~~~~~~--~-l~~g 245 (308)
+.. +.+ +.++.++ +.+-+.+++|. +|.|.++.-.- +... .......+|+.+.+..+ . ++++
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~ 190 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA 190 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE
Confidence 422 221 2334444 45667788887 88888874221 1111 22234579999999877 3 3333
Q ss_pred cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEeecCceeEEe
Q 021744 246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNNKGVVCY 307 (308)
Q Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~~~~~~~ 307 (308)
+ -..|.+|.+.... .....+..|+..++| +|++....++++++..++....++.-.||
T Consensus 191 T-t~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 191 T-TEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCF 249 (933)
T ss_pred e-cceeEEEEecCCC---cceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceee
Confidence 3 3479999998541 124557788889999 88876655776666677776666555555
No 315
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.10 E-value=0.0059 Score=55.15 Aligned_cols=228 Identities=13% Similarity=0.048 Sum_probs=123.2
Q ss_pred CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCccccc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINN 104 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~ 104 (308)
+..+..++.++.++-.|..+++. +.............+.. ...+++..++..+.++.++.|.-+|.++++.+-...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~---~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVV---NRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccc---cCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 45566777889999999888732 11111000000000000 001122111333777889999999998887553222
Q ss_pred ceee----eeee-eeeeecCCceEEee---------CCCeEEEEEcCCCceeeeEeeCccc-------------------
Q 021744 105 RAVI----KTDI-LCRNWVQGNCMYGE---------KCKFLHSWTVGDGFKLLTQLEGHQK------------------- 151 (308)
Q Consensus 105 ~~~~----~~~~-~~~~~~~~~~~~g~---------~d~~i~iwd~~~~~~~~~~~~~h~~------------------- 151 (308)
.... ..+. ...+. ++..+.++ .++.+..+|..++ +.+..++....
T Consensus 138 ~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETG-KLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCC-ceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 1111 0000 01111 23333332 4688999999999 56655543211
Q ss_pred -ce-EEEEEeCCCCEEEEeeCCC------------------cEEEEeCCCCeEEEEEeCCCe-e-------E-EEE----
Q 021744 152 -VV-SGITLPSGSDKLYSGSKDE------------------TVRVWDCASGQCAGVINLGGE-V-------G-CMI---- 198 (308)
Q Consensus 152 -~v-~~~~~~~~~~~l~s~s~dg------------------~v~~wd~~~~~~~~~~~~~~~-v-------~-~~~---- 198 (308)
.+ ...++++.+..++.++.++ .|.-.|+++++.+..++.... . . .+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 11 1245555566777777665 799999999999998873211 0 0 111
Q ss_pred cCCC---EEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCCEEEEE------------------cCCCeEEEEE
Q 021744 199 SEGP---WIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAG------------------TQDGAILAWK 255 (308)
Q Consensus 199 ~~~~---~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g------------------~~dg~i~iwd 255 (308)
.++. .++++. +|.+...|.++++.+ ..... ...++.+|+.+..+ ..+|.+.-.|
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 2333 455665 899999999999988 32211 11233444522221 2467888889
Q ss_pred cCCCCc
Q 021744 256 FNVTTN 261 (308)
Q Consensus 256 ~~~~~~ 261 (308)
+.+++.
T Consensus 373 ~~tG~~ 378 (488)
T cd00216 373 PKTGKV 378 (488)
T ss_pred CCCCcE
Confidence 888843
No 316
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=0.00081 Score=61.07 Aligned_cols=218 Identities=10% Similarity=0.062 Sum_probs=134.1
Q ss_pred CCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-------------ceEEee
Q 021744 60 LPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-------------NCMYGE 126 (308)
Q Consensus 60 ~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~ 126 (308)
++.++..|+..++.++|.|-.|-|+. ..|.+-|..+.|.+. ....|...+..+.|.|.. ..+++.
T Consensus 9 lpG~l~~sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iq-sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 9 LPGPLSRSNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQ-SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred CCCCCCcccccccccCccceEEEecC-ceEEEEehhhhhhhh-ccccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence 34444555544789999997755543 357888887766553 333455567777776533 125677
Q ss_pred CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC---CC-CEEEEeeCCCcEEEEeCCCCeEEEEEeC-CCeeEEEEc--
Q 021744 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS---GS-DKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMIS-- 199 (308)
Q Consensus 127 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~---~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~~-~~~v~~~~~-- 199 (308)
..|.|.+||.... ..+..+..|.+++..++|-+ +. ..|+.-....++.+|+..+|+...+... .....|+..
T Consensus 87 ~~GrIil~d~~~~-s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 87 ISGRIILVDFVLA-SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP 165 (1062)
T ss_pred ccCcEEEEEehhh-hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence 7899999999988 66777888999999999865 33 4567777778999999999999988873 344455531
Q ss_pred -CCC-EEEEEcCCcEEEEEcCC-------Cceeee-eCCCC-------------------------CEEEEEEeCC--EE
Q 021744 200 -EGP-WIFIGVTNFVKAWNTQT-------NTDLSL-SGPVG-------------------------QVYAMAVGND--LL 242 (308)
Q Consensus 200 -~~~-~l~~~~d~~i~~wd~~~-------~~~~~~-~~~~~-------------------------~v~~~~~~~~--~l 242 (308)
+.+ +.+.|+.|.+.+-+.-. ++...+ ..|.+ ..-.++|+|. .+
T Consensus 166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 233 33345556554443211 111111 11111 1123566776 33
Q ss_pred EEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCC
Q 021744 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDV 284 (308)
Q Consensus 243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~ 284 (308)
+.....+.+.++|++-. .++....-..+.+.. .+-|+.
T Consensus 246 lfi~~prellv~dle~~----~~l~vvpier~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYE----CCLAVVPIERGGAKFVDVLPDP 284 (1062)
T ss_pred EEEEeccceEEEcchhh----ceeEEEEeccCCcceeEeccCC
Confidence 33456678999999875 555555444443333 444544
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.05 E-value=0.0013 Score=57.98 Aligned_cols=138 Identities=13% Similarity=0.064 Sum_probs=81.6
Q ss_pred eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC
Q 021744 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (308)
Q Consensus 111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~ 190 (308)
+..+.++|.++.+.-+.||...|+..... .... .+.-...+|.+.+ .++.-....+|.++.--..+....++.
T Consensus 35 p~~ls~npngr~v~V~g~geY~iyt~~~~-r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGEYEIYTALAW-RNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTEEEEEETTTT-EEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----
T ss_pred CeeEEECCCCCEEEEEcCCEEEEEEccCC-cccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC
Confidence 78889999999977788999999985443 1211 2344578898844 466666688899963223333345565
Q ss_pred CCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 191 ~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~ 258 (308)
+..+..++. |.+|...+++.|.+||..+++.+...... +|..+.|+++ +++..+.+ .+.|++...
T Consensus 108 ~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 108 PFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred CcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 555666666 88888888779999999999888333332 3899999998 77766654 777777554
No 318
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.99 E-value=0.007 Score=50.71 Aligned_cols=191 Identities=13% Similarity=0.067 Sum_probs=107.8
Q ss_pred eeEEecCCCe---eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeE
Q 021744 71 AKRFANNTWG---RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQ 145 (308)
Q Consensus 71 ~i~~s~~g~~---~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~ 145 (308)
..+++.||+. .-.+--.+|.|-|++.++.+.+. ...-|....|.+ .+.+-+.||.+....+...-+..+.
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-----~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-----DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-----EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee-----cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 5788888887 44555567888888666443211 112233334433 4467788899888888732122221
Q ss_pred ----eeCcccce-EEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE--EEEEeC-------------CCeeEEEEcCCCEEE
Q 021744 146 ----LEGHQKVV-SGITLPSGSDKLYSGSKDETVRVWDCASGQC--AGVINL-------------GGEVGCMISEGPWIF 205 (308)
Q Consensus 146 ----~~~h~~~v-~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~--~~~~~~-------------~~~v~~~~~~~~~l~ 205 (308)
|..-.+++ ..-++...+..++--+.+|.|+--|+...+. ...+.. .-+..++.+....|+
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 11112222 2334455555666678899999988876542 222321 112334444444444
Q ss_pred E----Ec-----CC--cEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEE-EEcCCCeEEEEEcCCCCcccccceec
Q 021744 206 I----GV-----TN--FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLF-AGTQDGAILAWKFNVTTNCFEPAASL 269 (308)
Q Consensus 206 ~----~~-----d~--~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~ 269 (308)
+ +. ++ .|.++|+.+++.+ ++. -..++.+|.++.+ +|+ ....++.+.+||..++ +++.++
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG----k~~~~~ 328 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG----KLVRSI 328 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT------EEEEE
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC----cEEeeh
Confidence 3 21 22 5888899999888 333 2346779999987 554 4556899999999998 666666
Q ss_pred cc
Q 021744 270 KV 271 (308)
Q Consensus 270 ~~ 271 (308)
..
T Consensus 329 ~~ 330 (342)
T PF06433_consen 329 EQ 330 (342)
T ss_dssp --
T ss_pred hc
Confidence 53
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=1.1e-05 Score=73.80 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=115.1
Q ss_pred eeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC--cEEEEeCCC-Ce
Q 021744 108 IKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCAS-GQ 183 (308)
Q Consensus 108 ~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~v~~wd~~~-~~ 183 (308)
.....+++|+...+. +.|+..|.|+++++.++ .......+|..+|+-+.-+.+|.++++.+.-. ...+|++.+ +.
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 344678888887766 88999999999999999 77888899999999999999998766554433 577999875 45
Q ss_pred EEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-e-ee---CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEc
Q 021744 184 CAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-S-LS---GPVGQVYAMAVGND-LLFAGTQDGAILAWKF 256 (308)
Q Consensus 184 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~---~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~ 256 (308)
+...+.....+ .++..-+.-+.|. .....+||+.|+... + +. +....-+...|+|. .|+. .|| .+||+
T Consensus 1180 ~~Hsf~ed~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDv 1254 (1516)
T KOG1832|consen 1180 PRHSFDEDKAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDV 1254 (1516)
T ss_pred cccccccccee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeee
Confidence 55444422211 1122222333444 457889999998655 3 22 22234477889998 4442 333 47999
Q ss_pred CCCCcccccceeccccCCCeEEEEecCCCeEEE
Q 021744 257 NVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLG 289 (308)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~ 289 (308)
+.. +.++.|......+...|+|.|..++.
T Consensus 1255 R~~----~aIh~FD~ft~~~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1255 RIP----EAIHRFDQFTDYGGGGFHPSGNEVII 1283 (1516)
T ss_pred ccH----HHHhhhhhheecccccccCCCceEEe
Confidence 986 66666665553333378888776653
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.0017 Score=58.40 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=84.5
Q ss_pred eEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceee----eE
Q 021744 72 KRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLL----TQ 145 (308)
Q Consensus 72 i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~----~~ 145 (308)
-++...+++ +.|+.-|.+.+|+...++.......+....+..+..++...+ +.|+..|.|.++.++...... ..
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 456777888 999999999999998887665555444444556666776666 788899999999887642111 11
Q ss_pred e-eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 146 L-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 146 ~-~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
. +.|+..|++++|++++..+++|...|+|.+-.+.+
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 23788999999999999999999999999988876
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.93 E-value=0.0052 Score=54.32 Aligned_cols=207 Identities=10% Similarity=0.029 Sum_probs=103.4
Q ss_pred eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcc
Q 021744 71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ 150 (308)
Q Consensus 71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~ 150 (308)
.+.++|+|+.+....||.-.|+..... .. ...+......|...+.+++-.....|.++.--+. +....++. .
T Consensus 37 ~ls~npngr~v~V~g~geY~iyt~~~~-----r~-k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~-~~~k~i~~-~ 108 (443)
T PF04053_consen 37 SLSHNPNGRFVLVCGDGEYEIYTALAW-----RN-KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKN-EVVKSIKL-P 108 (443)
T ss_dssp EEEE-TTSSEEEEEETTEEEEEETTTT-----EE-EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE--TT------S
T ss_pred eEEECCCCCEEEEEcCCEEEEEEccCC-----cc-cccCceeEEEEecCccEEEEECCCeEEEEEcCcc-ccceEEcC-C
Confidence 799999999944466777778773111 11 1223344556667777777777888999632222 12222321 1
Q ss_pred cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCC--------
Q 021744 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTN-------- 220 (308)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~-------- 220 (308)
..+..+-. |.+|...+.+ .|.+||+++++.+..+.... +..+ .+++++++..++..+.+++....
T Consensus 109 ~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~ 183 (443)
T PF04053_consen 109 FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEE 183 (443)
T ss_dssp S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTT
T ss_pred cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhccccccc
Confidence 12233322 7767666554 89999999999999998765 3433 46688999888778888765443
Q ss_pred ----ceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceE
Q 021744 221 ----TDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFI 294 (308)
Q Consensus 221 ----~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~ 294 (308)
....+..-...|.+.+|..+ ++.+.. . .++. +..+.. ..+..+ ..++.. .+.+.. ..
T Consensus 184 g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~-~-~lkY--l~~Ge~--~~i~~l---d~~~yllgy~~~~--------~~ 246 (443)
T PF04053_consen 184 GVEDAFELIHEISERIKSGCWVEDCFIYTTS-N-HLKY--LVNGET--GIIAHL---DKPLYLLGYLPKE--------NR 246 (443)
T ss_dssp B-GGGEEEEEEE-S--SEEEEETTEEEEE-T-T-EEEE--EETTEE--EEEEE----SS--EEEEEETTT--------TE
T ss_pred CchhceEEEEEecceeEEEEEEcCEEEEEcC-C-eEEE--EEcCCc--ceEEEc---CCceEEEEEEccC--------CE
Confidence 22233333567888999888 444443 3 6665 443321 222222 234444 444432 35
Q ss_pred EEEeecCceeEEe
Q 021744 295 MFIGQNNKGVVCY 307 (308)
Q Consensus 295 i~~~~~~~~~~~~ 307 (308)
+|....+..+.+|
T Consensus 247 ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 247 LYLIDRDGNVISY 259 (443)
T ss_dssp EEEE-TT--EEEE
T ss_pred EEEEECCCCEEEE
Confidence 6666666666554
No 322
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.92 E-value=0.011 Score=57.29 Aligned_cols=211 Identities=10% Similarity=-0.011 Sum_probs=123.2
Q ss_pred eeEEecCCCe-eeccCCCcEEEE----ECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEE----EcCCC-
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNY----RAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSW----TVGDG- 139 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iw----d~~~~- 139 (308)
++.+-++... +.+..+|.|-+. +..... ..........+.+++|+||+.. +....++++.+- |+-..
T Consensus 80 s~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~ 157 (928)
T PF04762_consen 80 SFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEV 157 (928)
T ss_pred EEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEe
Confidence 6777888887 888889989888 433222 1233445556999999999976 555555665543 22100
Q ss_pred --------c-eee--------eEeeC------------------------cccceEEEEEeCCCCEEEEeeC---C---C
Q 021744 140 --------F-KLL--------TQLEG------------------------HQKVVSGITLPSGSDKLYSGSK---D---E 172 (308)
Q Consensus 140 --------~-~~~--------~~~~~------------------------h~~~v~~~~~~~~~~~l~s~s~---d---g 172 (308)
. +.+ ..|.| +.+.-..++|-.||+++|..+. . .
T Consensus 158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R 237 (928)
T PF04762_consen 158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRR 237 (928)
T ss_pred ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCcee
Confidence 0 000 01111 2224457889999999987764 2 5
Q ss_pred cEEEEeCCCCeEEEEEeC-C--CeeEEEEcCCCEEEEEc---C-CcEEEEEcCCCcee--e--eeCCCCCEEEEEEeCC-
Q 021744 173 TVRVWDCASGQCAGVINL-G--GEVGCMISEGPWIFIGV---T-NFVKAWNTQTNTDL--S--LSGPVGQVYAMAVGND- 240 (308)
Q Consensus 173 ~v~~wd~~~~~~~~~~~~-~--~~v~~~~~~~~~l~~~~---d-~~i~~wd~~~~~~~--~--~~~~~~~v~~~~~~~~- 240 (308)
.+++|+-+ |+...+... . ...-+.-|.|.+|++.. + ..|.+|.-+..+.- . +......|..+.|+++
T Consensus 238 ~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds 316 (928)
T PF04762_consen 238 VIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDS 316 (928)
T ss_pred EEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCC
Confidence 78999855 654444331 1 11223358899999754 2 36777764433222 2 2234568999999999
Q ss_pred -EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEEEEecCCC
Q 021744 241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVT 285 (308)
Q Consensus 241 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~ 285 (308)
.||.-..| .|.+|-..+...-.+....+..........|+|...
T Consensus 317 ~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 317 EILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred CEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 77765555 499999887643222222222222222237777543
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00038 Score=58.35 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=98.6
Q ss_pred EEEEEcCCCceeeeEeeCcccceEEEEEeCCCC-EEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE--c-CCCEEEE
Q 021744 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--S-EGPWIFI 206 (308)
Q Consensus 131 i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~ 206 (308)
++..+..+- +...-+.+|...|.+++|+|..+ ++..++.+.+|++.|+++.-.+..+.....+.+.+ - +..++.+
T Consensus 175 v~~l~~~~f-kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDF-KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCc-chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence 555655555 44556778889999999999776 78999999999999999999998888666665442 2 3556778
Q ss_pred Ec-CCcEEEEEcCCCcee--eeeC--CCCCEEEEEEeC------C--EEEEEcCCCeEEEEEcCCCCcccccceeccccC
Q 021744 207 GV-TNFVKAWNTQTNTDL--SLSG--PVGQVYAMAVGN------D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273 (308)
Q Consensus 207 ~~-d~~i~~wd~~~~~~~--~~~~--~~~~v~~~~~~~------~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 273 (308)
|. +|.|.+||++..+-. .+.+ ...+|..++.-+ . +++.... ....|.+.-....+.++.++....
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCc
Confidence 87 899999999976533 2222 233454444322 2 3443333 355676654333223333343322
Q ss_pred CCeEEEEecCCCeEEEee
Q 021744 274 DSNRAHFSRDVTSLLGSV 291 (308)
Q Consensus 274 ~~v~~~~s~d~~~l~~s~ 291 (308)
..+...+.+-...++.+.
T Consensus 332 ~cismqy~~~snh~l~ty 349 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTY 349 (463)
T ss_pred ceeeeeecCccceEEEEe
Confidence 223335555445555544
No 324
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.00049 Score=62.40 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=105.5
Q ss_pred eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC------------CEEEEeeCCCcEEEEe
Q 021744 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS------------DKLYSGSKDETVRVWD 178 (308)
Q Consensus 111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~s~s~dg~v~~wd 178 (308)
-..+.+++.|.+++|+. ..|.+-|..+. +.++.++.|+..|+.+.|.|.. -.++++...|.|.+||
T Consensus 18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~-q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSH-SLVSVVDSRSL-QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccceEEEecC-ceEEEEehhhh-hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 45677888888888775 56778898888 8899999999999999997631 2467888889999999
Q ss_pred CCCCeEEEEEe-CCCeeEEE--E---cCC-CEEE-EEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEc
Q 021744 179 CASGQCAGVIN-LGGEVGCM--I---SEG-PWIF-IGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGT 246 (308)
Q Consensus 179 ~~~~~~~~~~~-~~~~v~~~--~---~~~-~~l~-~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~ 246 (308)
...+..+..++ +..++..+ . .+. .+|+ .....++.+|+..+|+.. ..........|+.+.|- .+..-+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 99988887777 34444433 1 233 2333 455889999999999988 45444456666888774 555555
Q ss_pred CCCeEEEEEcC
Q 021744 247 QDGAILAWKFN 257 (308)
Q Consensus 247 ~dg~i~iwd~~ 257 (308)
..|.+.+-+.-
T Consensus 176 s~g~vl~~~~l 186 (1062)
T KOG1912|consen 176 SKGFVLSCKDL 186 (1062)
T ss_pred cCceEEEEecc
Confidence 56777766643
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0013 Score=55.35 Aligned_cols=72 Identities=8% Similarity=-0.088 Sum_probs=54.4
Q ss_pred eeEEecCCC-e-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeee
Q 021744 71 AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLT 144 (308)
Q Consensus 71 ~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~ 144 (308)
.++|+|... . ..++.+++|+|.|+++.... ........+++|+|..+... ..|...|.|.+||++....++.
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~~v--ssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~ 273 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--SSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLM 273 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccceee--eheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHh
Confidence 899999877 4 89999999999999876443 22333366899999888743 5677899999999986543333
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0029 Score=58.26 Aligned_cols=185 Identities=9% Similarity=0.036 Sum_probs=116.4
Q ss_pred eEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCC-C----eEEEEEcCCCc---
Q 021744 72 KRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKC-K----FLHSWTVGDGF--- 140 (308)
Q Consensus 72 i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d-~----~i~iwd~~~~~--- 140 (308)
-++++.+.. |.|+.+|.|.+.+- ........+.+...+....+..++ .+ ++-++| + .+++|+++...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 467777777 99999997766653 332222333444432222223333 22 333332 2 69999986321
Q ss_pred --eee--eEeeC-----cccceEEEEEeCCCCEEEEeeCCCcEEEEeCC--CC---eEEEEEeCCCeeEEEE--cCCCE-
Q 021744 141 --KLL--TQLEG-----HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA--SG---QCAGVINLGGEVGCMI--SEGPW- 203 (308)
Q Consensus 141 --~~~--~~~~~-----h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~--~~---~~~~~~~~~~~v~~~~--~~~~~- 203 (308)
+.+ ..+.. .+.++.+++++.+-+.++.|-.+|.|.++.-. .. +.........+++.+. .+++.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 223 11222 35678899999998999999999999998422 11 2222223567788773 45554
Q ss_pred EEEEcCCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC-E-EEEEcCCCeEEEEEcCCC
Q 021744 204 IFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND-L-LFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 204 l~~~~d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~-~-l~~g~~dg~i~iwd~~~~ 259 (308)
+++.....|.+|.+....+. .+..|...++|..+++. . +++++ ...+.+|+....
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 66777888999998855522 57788889999999987 3 44443 458999998865
No 327
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.83 E-value=7.2e-05 Score=40.70 Aligned_cols=38 Identities=34% Similarity=0.658 Sum_probs=34.0
Q ss_pred eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (308)
Q Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd 178 (308)
+....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778999999999999999999999999999996
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=3.1e-05 Score=70.89 Aligned_cols=145 Identities=17% Similarity=0.260 Sum_probs=102.0
Q ss_pred eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc--CC-cEEE
Q 021744 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV--TN-FVKA 214 (308)
Q Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~--d~-~i~~ 214 (308)
+..+.+..|....+|++|+.+.++|+.|+-.|.|+++++.+|....... |+..++-+ +.+|..+++++ .. -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 4566778899999999999999999999999999999999999888887 78888877 45677666433 33 6689
Q ss_pred EEcCCC-cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744 215 WNTQTN-TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG 289 (308)
Q Consensus 215 wd~~~~-~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~ 289 (308)
|++..- ... ++. .-.++.|+.. .-+.|+.-....+||+.+...+...+....+....-++ .|+|+.++++-
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 998752 222 222 3356788876 33445555689999999984321211111222333366 99999887773
No 329
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.78 E-value=0.012 Score=50.19 Aligned_cols=169 Identities=11% Similarity=0.139 Sum_probs=103.0
Q ss_pred CeEEEEEcCCCceeeeEeeC-cccceEEEE---EeCC----CCEEEEeeC----------CCcEEEEeCCCC-----e--
Q 021744 129 KFLHSWTVGDGFKLLTQLEG-HQKVVSGIT---LPSG----SDKLYSGSK----------DETVRVWDCASG-----Q-- 183 (308)
Q Consensus 129 ~~i~iwd~~~~~~~~~~~~~-h~~~v~~~~---~~~~----~~~l~s~s~----------dg~v~~wd~~~~-----~-- 183 (308)
..|++.|..+. +.+.++.- ....+.+++ +..+ .++++.|.. .|.|.++++... +
T Consensus 2 s~i~l~d~~~~-~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTF-EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTS-SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCC-eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 35788888777 44444432 123344443 3322 456666643 288999999984 2
Q ss_pred EEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCc-ee--eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCC
Q 021744 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT-DL--SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260 (308)
Q Consensus 184 ~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~-~~--~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 260 (308)
.+.....++++.++.+-+..|+++..+.|.+|++...+ .. ........+.++....++++.|.....+.++.+....
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT
T ss_pred EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC
Confidence 22333477889888665666888889999999998887 55 2333344889999888888899988888888665432
Q ss_pred cccccceecc--ccCCCeEE-EEecCCCeEEEee-ceEEEEeecC
Q 021744 261 NCFEPAASLK--VHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNN 301 (308)
Q Consensus 261 ~~~~~~~~~~--~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~ 301 (308)
..+..+. .....+.+ .|-+|++.++++- ...+++...+
T Consensus 161 ---~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 161 ---NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ---E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ---CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2222222 23445666 7775665555443 6666655543
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.73 E-value=0.0037 Score=55.31 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=56.6
Q ss_pred CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc-CCcEEEEEcCCCc
Q 021744 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV-TNFVKAWNTQTNT 221 (308)
Q Consensus 148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~-d~~i~~wd~~~~~ 221 (308)
..+..|.+++++|+.+.++.|..||+|.+||...+..... +..-.. .+..|+|.++++|+ .|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 3678999999999999999999999999999887644332 222222 23358899999888 6899999987554
No 331
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.71 E-value=0.009 Score=57.86 Aligned_cols=186 Identities=11% Similarity=0.042 Sum_probs=108.0
Q ss_pred eeEEecCCCe-eeccC----C--CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeC----CCeEEEEEcCCC
Q 021744 71 AKRFANNTWG-RNNNF----N--NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEK----CKFLHSWTVGDG 139 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~----d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----d~~i~iwd~~~~ 139 (308)
.|+|-.||.+ |+.+. + ..+|||+.+ |+...... ...+--..++|-|.|+.+++.. ...|.+|.-+..
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL 291 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL 291 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc
Confidence 7899999999 65553 2 579999986 43221122 2222255678999998755443 245666664433
Q ss_pred ceeeeEee--CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE--EEEEe--CCCeeEEE-E-cC-CCEEEE-EcC
Q 021744 140 FKLLTQLE--GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC--AGVIN--LGGEVGCM-I-SE-GPWIFI-GVT 209 (308)
Q Consensus 140 ~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~--~~~~~--~~~~v~~~-~-~~-~~~l~~-~~d 209 (308)
+.--..++ .....|..+.|++++..|+..-.|. |.+|...+..- .+.+. ....+..+ | +. ...|.. ..+
T Consensus 292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~ 370 (928)
T PF04762_consen 292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN 370 (928)
T ss_pred EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecC
Confidence 21122222 3467899999999999998877665 99998887542 22222 12112112 2 21 112222 223
Q ss_pred CcEEEEE-------------------------------cCCCc---ee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeE
Q 021744 210 NFVKAWN-------------------------------TQTNT---DL--SLSGPVGQVYAMAVGND--LLFAGTQDGAI 251 (308)
Q Consensus 210 ~~i~~wd-------------------------------~~~~~---~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i 251 (308)
+.+..++ ++..- ++ .......+|.+++|+++ .+++-..||.|
T Consensus 371 g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 371 GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 4333222 11110 01 11123568999999988 68999999999
Q ss_pred EEEEcCCC
Q 021744 252 LAWKFNVT 259 (308)
Q Consensus 252 ~iwd~~~~ 259 (308)
.+|.....
T Consensus 451 ~~~~~~~~ 458 (928)
T PF04762_consen 451 SIYEWDLK 458 (928)
T ss_pred EEEEecCC
Confidence 99986543
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0052 Score=56.73 Aligned_cols=105 Identities=9% Similarity=0.017 Sum_probs=75.9
Q ss_pred eEEecCCCe-eecc----CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeE
Q 021744 72 KRFANNTWG-RNNN----FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQ 145 (308)
Q Consensus 72 i~~s~~g~~-~s~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~ 145 (308)
..|+|.... |.++ ..|+|-||- ++|++-.....+. .+.+++|.|.... +.|=.-|.+.+|...+. +.-..
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~--hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv 96 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV--HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTV 96 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce--ehhhhccChHHHHHhhccccceeEEEecCCc-eeeee
Confidence 567777776 4444 457888883 5565432222221 1445778887655 66777899999998877 44444
Q ss_pred eeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 146 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~ 180 (308)
...|+.+|..+.|+++|..++++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45699999999999999999999999999999765
No 333
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=0.017 Score=46.11 Aligned_cols=145 Identities=13% Similarity=-0.023 Sum_probs=94.4
Q ss_pred eEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744 72 KRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH 149 (308)
Q Consensus 72 i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h 149 (308)
+.+-++.+. +.|+..+.+.--|..+++..-+...+. .+.+-+.-..+..+.|+..|.+++.+.+++ .+...+..-
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~--RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~ 92 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV--RIECSAIVVGDFVVLGCYSGGLYFLCVKTG-SQIWNFVIL 92 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCc--eeeeeeEEECCEEEEEEccCcEEEEEecch-hheeeeeeh
Confidence 455566555 888888988888888876553332222 121111222233588999999999999999 556655532
Q ss_pred ccceE-EEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeE---EEEc-CCCEEEEEcCCcEEEEEcCCC
Q 021744 150 QKVVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG---CMIS-EGPWIFIGVTNFVKAWNTQTN 220 (308)
Q Consensus 150 ~~~v~-~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~---~~~~-~~~~l~~~~d~~i~~wd~~~~ 220 (308)
+.|. .....+++..+..++.|++.+.-|.++..++.+.+.++.+. ++.+ ++.+.++...|.+.--..++.
T Consensus 93 -~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 93 -ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred -hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 2332 23456789999999999999999999999999988555443 2333 455555555665544444443
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.65 E-value=0.032 Score=48.20 Aligned_cols=207 Identities=12% Similarity=0.133 Sum_probs=106.9
Q ss_pred eeEEecCCCe-eeccCC-CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCC--eEEEEEcCCCceeeeEe
Q 021744 71 AKRFANNTWG-RNNNFN-NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCK--FLHSWTVGDGFKLLTQL 146 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~iwd~~~~~~~~~~~ 146 (308)
.++||||+++ |....| ..|+.+.+........ .. -.+....+-..| ..+. .+.++|+.+++......
T Consensus 105 ~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-~y---p~~~~~~YPk~G-----~~np~v~l~v~~~~~~~~~~~~~ 175 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-QY---PEVESIRYPKAG-----DPNPRVSLFVVDLASGKTTELDP 175 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-SS----EEEEEE--BTT-----S---EEEEEEEESSSTCCCEE--
T ss_pred ceEECCCCCEEEEEEECCcCCceEEeeccCCccc-cC---CcccccccCCCC-----CcCCceEEEEEECCCCcEEEeee
Confidence 6999999999 655544 5566665521100000 00 012223332222 2222 35678888773211111
Q ss_pred ----eCcccceEEEEEeCCCCEEEE--eeCCC---cEEEEeCCCCeEEEEEe--CCCe-----eEEEE-cCCCEEE-EEc
Q 021744 147 ----EGHQKVVSGITLPSGSDKLYS--GSKDE---TVRVWDCASGQCAGVIN--LGGE-----VGCMI-SEGPWIF-IGV 208 (308)
Q Consensus 147 ----~~h~~~v~~~~~~~~~~~l~s--~s~dg---~v~~wd~~~~~~~~~~~--~~~~-----v~~~~-~~~~~l~-~~~ 208 (308)
.....-+..+.|.+++..|+. ...+. .+.+.|..+++....+. .+.. ...+. +++..++ ...
T Consensus 176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~ 255 (353)
T PF00930_consen 176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE 255 (353)
T ss_dssp -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence 233556889999999884433 33333 46677887765544433 2221 22334 4555444 444
Q ss_pred -CC--cEEEEEcCCCceeeeeCCCCCEEE-EEEeCC---EEEEEcCC----CeEEEEEcC-CCCcccccceeccccCCCe
Q 021744 209 -TN--FVKAWNTQTNTDLSLSGPVGQVYA-MAVGND---LLFAGTQD----GAILAWKFN-VTTNCFEPAASLKVHTDSN 276 (308)
Q Consensus 209 -d~--~i~~wd~~~~~~~~~~~~~~~v~~-~~~~~~---~l~~g~~d----g~i~iwd~~-~~~~~~~~~~~~~~~~~~v 276 (308)
+| .|.+++..++....+....-.|.. +.++++ +++++..+ ..|+..++. . ..+..+......-
T Consensus 256 ~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-----~~~~~LT~~~~~~ 330 (353)
T PF00930_consen 256 RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-----GEPKCLTCEDGDH 330 (353)
T ss_dssp TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-----TEEEESSTTSSTT
T ss_pred cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-----CCeEeccCCCCCc
Confidence 66 778888888877766666667755 556666 45555553 245555556 3 2334444333333
Q ss_pred EE-EEecCCCeEEEee
Q 021744 277 RA-HFSRDVTSLLGSV 291 (308)
Q Consensus 277 ~~-~~s~d~~~l~~s~ 291 (308)
.. .|||++++++..+
T Consensus 331 ~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 331 YSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEE-TTSSEEEEEE
T ss_pred eEEEECCCCCEEEEEE
Confidence 44 9999999998554
No 335
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.65 E-value=0.026 Score=46.86 Aligned_cols=175 Identities=13% Similarity=0.079 Sum_probs=103.4
Q ss_pred ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE--------------
Q 021744 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-------------- 186 (308)
Q Consensus 121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~-------------- 186 (308)
..+.|.++| +++++........+.. +...|..+...++-+.++.-+ |+.+.++++..-....
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 457788888 8999984332233322 334499999998877766654 4999999988654433
Q ss_pred -EEeCCCeeEEEE-----cCCCEEEEEcCCcEEEEEcCCC-----ceeeeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEE
Q 021744 187 -VINLGGEVGCMI-----SEGPWIFIGVTNFVKAWNTQTN-----TDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWK 255 (308)
Q Consensus 187 -~~~~~~~v~~~~-----~~~~~l~~~~d~~i~~wd~~~~-----~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd 255 (308)
.+.....+..+. .....|+++...+|.+|..... ....-..-...+.+++|.++.++.|..+ ...+.|
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~-~f~~id 163 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK-GFYLID 163 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC-ceEEEe
Confidence 111122222232 2344666777778888876542 2222223457889999998877777644 588889
Q ss_pred cCCCCcccccceeccc----------cCCCeEEEEecCCCeEEEeeceEEEEeecCc
Q 021744 256 FNVTTNCFEPAASLKV----------HTDSNRAHFSRDVTSLLGSVSFIMFIGQNNK 302 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~----------~~~~v~~~~s~d~~~l~~s~s~~i~~~~~~~ 302 (308)
+.++.. +.+..... ...++...--+++.+|++.....+|+-.+.+
T Consensus 164 l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~ 218 (275)
T PF00780_consen 164 LNTGSP--SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGE 218 (275)
T ss_pred cCCCCc--eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCC
Confidence 986532 22222111 1223444222345777766666676655443
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.63 E-value=2e-05 Score=69.57 Aligned_cols=184 Identities=15% Similarity=0.250 Sum_probs=110.8
Q ss_pred eeeeeeecCC-ce--EEeeCCCeEEEEEcCCCcee-eeEeeCcccceEEEEEeC-CCCEEEEee----CCCcEEEEeCCC
Q 021744 111 DILCRNWVQG-NC--MYGEKCKFLHSWTVGDGFKL-LTQLEGHQKVVSGITLPS-GSDKLYSGS----KDETVRVWDCAS 181 (308)
Q Consensus 111 ~~~~~~~~~~-~~--~~g~~d~~i~iwd~~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~s~s----~dg~v~~wd~~~ 181 (308)
+.+++.+.+. .+ +.|..+|.|-+-..+..... .....+|....++++|++ |.+.||.|- .|..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 4444444333 34 67888999999888755322 344567889999999998 445666663 356899999998
Q ss_pred C--eEEEEEeC------CCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeC---CEEEEEcCCC
Q 021744 182 G--QCAGVINL------GGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN---DLLFAGTQDG 249 (308)
Q Consensus 182 ~--~~~~~~~~------~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg 249 (308)
+ .+...... .....|...+.+++.+|. ...++++|++........-.+..+..+.+.| +++++-. ||
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg 217 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DG 217 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cC
Confidence 6 33332221 111222235677777887 6799999998543321111223445555655 4777655 99
Q ss_pred eEEEEE-cCCCCcccccceeccccCC----CeEE-EEecCCCeEEEee---ceEEEEe
Q 021744 250 AILAWK-FNVTTNCFEPAASLKVHTD----SNRA-HFSRDVTSLLGSV---SFIMFIG 298 (308)
Q Consensus 250 ~i~iwd-~~~~~~~~~~~~~~~~~~~----~v~~-~~s~d~~~l~~s~---s~~i~~~ 298 (308)
.|.+|| .++-+ .++..+..... .+.. +|+|...-+++.. +..|+..
T Consensus 218 ~iAiwD~~rnie---npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 218 DIAIWDTYRNIE---NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred ceeeccchhhhc---cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 999999 43322 44444433333 3666 9998765555443 5555443
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0059 Score=53.73 Aligned_cols=165 Identities=7% Similarity=0.005 Sum_probs=92.9
Q ss_pred eEEecCCCe---eeccCC--CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCe--EEEEEcCCCcee
Q 021744 72 KRFANNTWG---RNNNFN--NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKF--LHSWTVGDGFKL 142 (308)
Q Consensus 72 i~~s~~g~~---~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~--i~iwd~~~~~~~ 142 (308)
-+|+|++.. ++-... ..+.++++++++..... ........-.|+|+|.. ++...|+. |++.|+..+ +
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~-~- 273 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK-N- 273 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceee--ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC-c-
Confidence 477888776 222222 35889999887654222 23333555689999966 44556665 555666665 3
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEe-eCCCc--EEEEeCCCCeEEEEEe-CCCe-eEEEEcCCCEEEEEc--CCc--EE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSG-SKDET--VRVWDCASGQCAGVIN-LGGE-VGCMISEGPWIFIGV--TNF--VK 213 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~--v~~wd~~~~~~~~~~~-~~~~-v~~~~~~~~~l~~~~--d~~--i~ 213 (308)
+..+..-.+.-..-.|+|||++++-. +..|. |.+++.+.++..+... .... ...++++|++++... +|. |.
T Consensus 274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~ 353 (425)
T COG0823 274 LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDID 353 (425)
T ss_pred ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeE
Confidence 33355444444467899999987654 44554 5566666555422222 2222 334578999888543 454 66
Q ss_pred EEEcCCCceeeeeCCCCCEEEEEEeCC
Q 021744 214 AWNTQTNTDLSLSGPVGQVYAMAVGND 240 (308)
Q Consensus 214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~ 240 (308)
+.|+.++..............-.+.++
T Consensus 354 ~~~~~~~~~~~~lt~~~~~e~ps~~~n 380 (425)
T COG0823 354 KNDLASGGKIRILTSTYLNESPSWAPN 380 (425)
T ss_pred EeccCCCCcEEEccccccCCCCCcCCC
Confidence 777766653322222222333444454
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0016 Score=57.19 Aligned_cols=142 Identities=12% Similarity=0.121 Sum_probs=91.7
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEee---CC-CcEEEEeCCCCeEEEEEe--CCCeeEEEEcCCCEEEEEc--CC--cE
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGS---KD-ETVRVWDCASGQCAGVIN--LGGEVGCMISEGPWIFIGV--TN--FV 212 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s---~d-g~v~~wd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~--d~--~i 212 (308)
...+..-...+..-+|+|++..++-.+ .. ..+.++|+++++...... .......++|+|+.|+.+. |+ .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 334444456677788999987754332 22 358999999987766665 3334456789999888543 55 68
Q ss_pred EEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEE--EcCCCCcccccceeccccCCCeEE-EEecCCCe
Q 021744 213 KAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAW--KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS 286 (308)
Q Consensus 213 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~ 286 (308)
.++|+.+++...+....+.-..=.|+|| ++++.+..|.-.|| +.+.. ....+......-.. .++|||++
T Consensus 265 y~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----~~~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----QVTRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-----ceeEeeccCCCCcCccCCCCCCE
Confidence 8889998886665554444456778898 55566667765554 55543 22333333333336 99999999
Q ss_pred EEE
Q 021744 287 LLG 289 (308)
Q Consensus 287 l~~ 289 (308)
++.
T Consensus 340 i~~ 342 (425)
T COG0823 340 IVF 342 (425)
T ss_pred EEE
Confidence 983
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.60 E-value=0.0087 Score=54.25 Aligned_cols=210 Identities=10% Similarity=-0.008 Sum_probs=113.9
Q ss_pred eEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEE-ee---C-CCeEEEEEcCCCceeee
Q 021744 72 KRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMY-GE---K-CKFLHSWTVGDGFKLLT 144 (308)
Q Consensus 72 i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~---~-d~~i~iwd~~~~~~~~~ 144 (308)
+=++|||.. .+.-+.+.+.+.|.++.+... +.........+.+.+++..+. .+ + ...+..-+..+. ..+.
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~--qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-d~~v 274 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAW--QVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-DWVV 274 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEE--EEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC-ceEE
Confidence 334567765 455566777778876543321 111122345566777775522 21 1 112222222111 1111
Q ss_pred EeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC-----CeEEEEEeCCCee--EEEEcCCCEEEEEc--CCcEEEE
Q 021744 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-----GQCAGVINLGGEV--GCMISEGPWIFIGV--TNFVKAW 215 (308)
Q Consensus 145 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-----~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~~i~~w 215 (308)
.+. ...+ -++.++|++... .++.|.+.|.++ .+.+..+..+... ..++|||++++++. +.++.++
T Consensus 275 vfn--i~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 275 VFN--IARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred EEc--hHHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 110 0000 023446766554 367899999998 4566666643333 34579999998765 8899999
Q ss_pred EcCCCce------------e-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC------CCcccccceeccc---
Q 021744 216 NTQTNTD------------L-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV------TTNCFEPAASLKV--- 271 (308)
Q Consensus 216 d~~~~~~------------~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~------~~~~~~~~~~~~~--- 271 (308)
|+.+.+. . ...- .......+|.++ .+.+--.|..|..|++.. +......+..+.-
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~ 427 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ 427 (635)
T ss_pred EChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc
Confidence 9988653 1 1111 223345678877 556666788999999875 1111133333443
Q ss_pred --cCCCeEE-EEecCCCeEEEee
Q 021744 272 --HTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 272 --~~~~v~~-~~s~d~~~l~~s~ 291 (308)
|...... .-.|||+||++-.
T Consensus 428 pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 428 PGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred cceeeecCCCcCCCCCCEEEEcc
Confidence 3333333 5578999998765
No 340
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.58 E-value=0.028 Score=45.55 Aligned_cols=173 Identities=10% Similarity=-0.029 Sum_probs=100.9
Q ss_pred eeEEecCCCe-e-eccCCC-cEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEee
Q 021744 71 AKRFANNTWG-R-NNNFNN-HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE 147 (308)
Q Consensus 71 ~i~~s~~g~~-~-s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 147 (308)
.+.|..+|.. - ||-+.. .|+.+|+++++..........-.-.-+....+....-.=.++...+||..+- +.+.++.
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl-~~~~~~~ 127 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTL-KKIGTFP 127 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTT-EEEEEEE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccc-eEEEEEe
Confidence 5788777777 4 444443 5899999988654221111111111222233322233446789999999988 7777775
Q ss_pred CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEE----EcCCCEEE-EEcCCcEEEEEcCC
Q 021744 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCM----ISEGPWIF-IGVTNFVKAWNTQT 219 (308)
Q Consensus 148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~----~~~~~~l~-~~~d~~i~~wd~~~ 219 (308)
..+.=+.++ .+++.|+.......+.++|.++.+....+. ...++..+ +.+|.+.| +-....|...|..+
T Consensus 128 -y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 128 -YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp --SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred -cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence 344556776 456677776667889999999988877776 33444332 45666555 23377888888888
Q ss_pred Ccee-eee---------------CCCCCEEEEEEeCC---EEEEEcC
Q 021744 220 NTDL-SLS---------------GPVGQVYAMAVGND---LLFAGTQ 247 (308)
Q Consensus 220 ~~~~-~~~---------------~~~~~v~~~~~~~~---~l~~g~~ 247 (308)
|+.. .+. ...+-.+.|++.|+ +++||=.
T Consensus 205 G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 205 GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp -BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 8765 211 01346899999887 6777643
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.57 E-value=0.018 Score=50.20 Aligned_cols=216 Identities=13% Similarity=0.087 Sum_probs=117.5
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcc--------------------------c------c----------ccee
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN--------------------------I------N----------NRAV 107 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~--------------------------~------~----------~~~~ 107 (308)
.+.|+++..- +.|...|.|-||.....+... . . ....
T Consensus 6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~ 85 (395)
T PF08596_consen 6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK 85 (395)
T ss_dssp EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---
T ss_pred EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc
Confidence 4778888666 888888998888763221110 0 0 0111
Q ss_pred eeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe--eC------cccceEEEEEeC-----CC---CEEEEeeCC
Q 021744 108 IKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL--EG------HQKVVSGITLPS-----GS---DKLYSGSKD 171 (308)
Q Consensus 108 ~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~--~~------h~~~v~~~~~~~-----~~---~~l~s~s~d 171 (308)
...+.+++.+.-|-.+.|.++|.+.|.|++.. ..+..- .. ....|+++.|.. |+ -.++.|...
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 23366777777777788999999999999877 454431 11 234577777741 22 357899999
Q ss_pred CcEEEEeCC--C-CeEE----EEE-eCCCeeEEEE---c---------------------CCCEEEEEcCCcEEEEEcCC
Q 021744 172 ETVRVWDCA--S-GQCA----GVI-NLGGEVGCMI---S---------------------EGPWIFIGVTNFVKAWNTQT 219 (308)
Q Consensus 172 g~v~~wd~~--~-~~~~----~~~-~~~~~v~~~~---~---------------------~~~~l~~~~d~~i~~wd~~~ 219 (308)
|.+.+|.+. . +... ... .+.+++..+. . -..++++.++..++++...+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 999999765 1 2111 111 1333333221 1 12366778899999999988
Q ss_pred Ccee-eeeCCCCCEEEEEEe------CC-EEEEEcCCCeEEEEEcCCCCcccccceeccccC----CCeEE-EEecCCCe
Q 021744 220 NTDL-SLSGPVGQVYAMAVG------ND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT----DSNRA-HFSRDVTS 286 (308)
Q Consensus 220 ~~~~-~~~~~~~~v~~~~~~------~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~v~~-~~s~d~~~ 286 (308)
.+.. ...........+.+- .. .|++-..+|.|++|.+..- +.+..+.-.. ..+.. .++++|+.
T Consensus 245 ~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L----kei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 245 SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL----KEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp --EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT------EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc----hHhhcccCCCccccccccccEECCCCCE
Confidence 7665 222221223334442 12 7788889999999999985 5555544321 22333 88999998
Q ss_pred EEEee
Q 021744 287 LLGSV 291 (308)
Q Consensus 287 l~~s~ 291 (308)
++-.+
T Consensus 321 ~~~~g 325 (395)
T PF08596_consen 321 FYWTG 325 (395)
T ss_dssp EEE-S
T ss_pred EEEeC
Confidence 87544
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.57 E-value=0.0096 Score=47.52 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=86.0
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEE-EEEE
Q 021744 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVY-AMAV 237 (308)
Q Consensus 162 ~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~-~~~~ 237 (308)
..+++.|+..+.+.--|..+|..+.+-..+.++.+- .--|.+++.|. .+.+++.+.++++.. .+.. .+.|. ....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~ 101 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQC 101 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEE
Confidence 467889999999999999999988877766665543 23466677766 999999999999665 3332 22222 1223
Q ss_pred eCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec-CCCeEEEee
Q 021744 238 GND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR-DVTSLLGSV 291 (308)
Q Consensus 238 ~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~-d~~~l~~s~ 291 (308)
.++ .+..|+.|+..+..|.++. ..+...+-....-.+ +..| ++.+.+++.
T Consensus 102 d~~~glIycgshd~~~yalD~~~~----~cVykskcgG~~f~sP~i~~g~~sly~a~t 155 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTY----GCVYKSKCGGGTFVSPVIAPGDGSLYAAIT 155 (354)
T ss_pred cCCCceEEEecCCCcEEEeccccc----ceEEecccCCceeccceecCCCceEEEEec
Confidence 344 8999999999999999986 666665543333334 6676 555555444
No 343
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0033 Score=54.89 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=92.1
Q ss_pred CCCE-EEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCC--------CEEEEEcCCcEEEEEcCCCce--e-eee
Q 021744 161 GSDK-LYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEG--------PWIFIGVTNFVKAWNTQTNTD--L-SLS 226 (308)
Q Consensus 161 ~~~~-l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~--------~~l~~~~d~~i~~wd~~~~~~--~-~~~ 226 (308)
+.++ +.++.....++-.|++.|+.+.+++.+..+..+ .++. +.|+.-+++.|.-||.+-... + ...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3344 456667778999999999999999965554433 3332 233333488999999984432 1 222
Q ss_pred CC----CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEE
Q 021744 227 GP----VGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIM 295 (308)
Q Consensus 227 ~~----~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i 295 (308)
.| .....|++-..+ ++++|+.+|.|++||--.. +.-..+.+-..+|.. ..+.||+++++.|...|
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~----~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyL 494 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGR----RAKTALPGLGDAIKHVDVTADGKWILATCKTYL 494 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhh----hhhhcccccCCceeeEEeeccCcEEEEecccEE
Confidence 22 235677777777 9999999999999997332 444567788889999 99999999999884333
No 344
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.27 E-value=0.09 Score=44.28 Aligned_cols=171 Identities=13% Similarity=0.146 Sum_probs=106.0
Q ss_pred CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEE-----------eeCCCeEEEEEcCCCceeeeEeeCc---cc-
Q 021744 87 NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMY-----------GEKCKFLHSWTVGDGFKLLTQLEGH---QK- 151 (308)
Q Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~d~~i~iwd~~~~~~~~~~~~~h---~~- 151 (308)
+.+.|.|.++++.++....+.... +..+|++..+. |-..-.|.+||..+. ++..++.-- ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~---~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGN---VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEE---EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeecccCCc---eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchhe
Confidence 379999988887654443333322 44577775421 555778999999988 565544311 11
Q ss_pred ---ceEEEEEeCCCCEEEEe--eCCCcEEEEeCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEcCCcEEEEEcC-CCcee-
Q 021744 152 ---VVSGITLPSGSDKLYSG--SKDETVRVWDCASGQCAGVINLGGEVGCM-ISEGPWIFIGVTNFVKAWNTQ-TNTDL- 223 (308)
Q Consensus 152 ---~v~~~~~~~~~~~l~s~--s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~d~~i~~wd~~-~~~~~- 223 (308)
....++++.|+++++.. +---+|.+-|+..++.+.++..++..... +.+..+...|.||.+.-..+. .++..
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 12345678888877654 34567899999999999988877765554 445556667889988888877 34433
Q ss_pred e----eeCCCCCEE-EEEEeCC--EEEEEcCCCeEEEEEcCCCCc
Q 021744 224 S----LSGPVGQVY-AMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (308)
Q Consensus 224 ~----~~~~~~~v~-~~~~~~~--~l~~g~~dg~i~iwd~~~~~~ 261 (308)
+ +....+++. .-++... .++.-+.+|.|+-.|+.....
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~ 217 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA 217 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc
Confidence 1 111222222 3334433 566678899999999987643
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.26 E-value=0.026 Score=39.13 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=64.2
Q ss_pred eEEEEEe---CCC-CEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE-cCCCEEEEE-cCCcEEEEEcCCCceeeee
Q 021744 153 VSGITLP---SGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-SEGPWIFIG-VTNFVKAWNTQTNTDLSLS 226 (308)
Q Consensus 153 v~~~~~~---~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 226 (308)
|++|++. .++ +.|+.|+.|..|++|+-. +.+.++.....+.++. ..+..++.+ .+|+|-+|+-... .-..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R-lWRiK 78 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR-LWRIK 78 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce-eeeec
Confidence 5566654 333 579999999999999744 7788888777777774 333445544 4999999975322 11333
Q ss_pred CCCCCEEEEEEeC---C---EEEEEcCCCeEEE
Q 021744 227 GPVGQVYAMAVGN---D---LLFAGTQDGAILA 253 (308)
Q Consensus 227 ~~~~~v~~~~~~~---~---~l~~g~~dg~i~i 253 (308)
. ...+.++++.. + -|++|-.+|.|-+
T Consensus 79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 33466666543 2 6889988888753
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.26 E-value=0.084 Score=43.76 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=121.6
Q ss_pred CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCcccc--
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN-- 103 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~-- 103 (308)
+..++.|+.+| +.+++.... ..+.... . .. .-..+.+.|+-+.+..-.|+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~-~~~~~i~----~-~~-----~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDP-SKPTRIL----K-LS-----SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred CCEEEEEECCC-EEEEEecCC-ccceeEe----e-cc-----eEEEEEEecccCEEEEEcCCccEEEEchhhcccccccc
Confidence 56678888888 888887222 0000000 0 00 011467777766633334699999999654433211
Q ss_pred -----------cceeeeeeeeee--eecCC-ceEEeeCCCeEEEEEcCCC---c-eeeeEeeCcccceEEEEEeCCCCEE
Q 021744 104 -----------NRAVIKTDILCR--NWVQG-NCMYGEKCKFLHSWTVGDG---F-KLLTQLEGHQKVVSGITLPSGSDKL 165 (308)
Q Consensus 104 -----------~~~~~~~~~~~~--~~~~~-~~~~g~~d~~i~iwd~~~~---~-~~~~~~~~h~~~v~~~~~~~~~~~l 165 (308)
.....+.+...+ -...+ ..+.......|.+|..... . +..+++. -.+.+.+++|. ++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKI 151 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEE
Confidence 011111122222 11222 3344555568888887653 1 2445554 35788999998 4567
Q ss_pred EEeeCCCcEEEEeCCCCeEEEEEeCC-------------CeeEEEE-cCCCEEEEEcCCcEEEEEcCCCcee--eeeCCC
Q 021744 166 YSGSKDETVRVWDCASGQCAGVINLG-------------GEVGCMI-SEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPV 229 (308)
Q Consensus 166 ~s~s~dg~v~~wd~~~~~~~~~~~~~-------------~~v~~~~-~~~~~l~~~~d~~i~~wd~~~~~~~--~~~~~~ 229 (308)
+.|..+ ...+.|+.++.....+... .++..+. +++++|+ +.+..-.+.|....... .+. -.
T Consensus 152 ~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll-~~~~~g~fv~~~G~~~r~~~i~-W~ 228 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLL-CYDNIGVFVNKNGEPSRKSTIQ-WS 228 (275)
T ss_pred EEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEE-EecceEEEEcCCCCcCcccEEE-cC
Confidence 766654 4888899977665544311 1233332 4455554 44444444454332222 222 23
Q ss_pred CCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccc
Q 021744 230 GQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKV 271 (308)
Q Consensus 230 ~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (308)
..+.++++...+++.-+. +.|.||++.++ ++++++..
T Consensus 229 ~~p~~~~~~~pyli~~~~-~~iEV~~~~~~----~lvQ~i~~ 265 (275)
T PF00780_consen 229 SAPQSVAYSSPYLIAFSS-NSIEVRSLETG----ELVQTIPL 265 (275)
T ss_pred CchhEEEEECCEEEEECC-CEEEEEECcCC----cEEEEEEC
Confidence 366778887676666555 45999999998 67777664
No 347
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.16 E-value=0.024 Score=51.57 Aligned_cols=179 Identities=8% Similarity=-0.005 Sum_probs=104.3
Q ss_pred eecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC----CcEEEEeCCCCeEEEEEe
Q 021744 116 NWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQCAGVIN 189 (308)
Q Consensus 116 ~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d----g~v~~wd~~~~~~~~~~~ 189 (308)
+.++|.. .+.-..+.+.+.|..+. +...++.- .+....+++++++.++++.+.+ .++..-+......+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etm-eV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETM-EVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccc-eEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 3445533 23334577778888876 55555442 2244677889999998777632 233333333222222222
Q ss_pred CCCeeEEEEcCCCEEEEEcCCcEEEEEcCC-----CceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCc
Q 021744 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQT-----NTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN 261 (308)
Q Consensus 190 ~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~-----~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~ 261 (308)
.. .+..+.++|++... .++.|.+.|.++ .+......-......+.++|| .++++..+.+|.+.|+.+.+.
T Consensus 278 i~-~iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 278 IA-RIEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred hH-HHHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 11 11123457777666 367899999998 344443344567789999999 566677799999999987531
Q ss_pred cc--------ccceeccccCCCeEEEEecCCCeEEEee--ceEEEEee
Q 021744 262 CF--------EPAASLKVHTDSNRAHFSRDVTSLLGSV--SFIMFIGQ 299 (308)
Q Consensus 262 ~~--------~~~~~~~~~~~~v~~~~s~d~~~l~~s~--s~~i~~~~ 299 (308)
.+ ..+.+.+--..++..+|.++|. ..++. +..+-.|.
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn 402 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEe
Confidence 00 1233444445566669988885 44443 44444433
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.2 Score=45.74 Aligned_cols=104 Identities=2% Similarity=-0.076 Sum_probs=74.6
Q ss_pred CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744 24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~ 100 (308)
....+++-|++-|.+++++-..+ +....+..+-.+. .+.++++..+ |.|+..+.|.++.++..++.
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~-----------~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTG-----------EMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cCCceEEEecccceEEEEecCch-----------hhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34568999999999999998776 2223333332233 6778888888 88999999999988765433
Q ss_pred ccc-----cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744 101 NIN-----NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD 138 (308)
Q Consensus 101 ~~~-----~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~ 138 (308)
... ...|+..|.++.|++++.. .+|...|.|.+-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 221 2335666999999999966 7788888888776655
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.13 E-value=0.14 Score=43.67 Aligned_cols=126 Identities=15% Similarity=0.164 Sum_probs=81.2
Q ss_pred CeEEEEEcCCC----c--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe-EEEEEe--CCCeeEEEEc
Q 021744 129 KFLHSWTVGDG----F--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-CAGVIN--LGGEVGCMIS 199 (308)
Q Consensus 129 ~~i~iwd~~~~----~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~-~~~~~~--~~~~v~~~~~ 199 (308)
|.|.++++... . +.+... ..+++|++++-- ++. |+.+. .+.|.+|++...+ .+..-. ....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 99999999873 1 222222 357889998876 344 44433 4789999998877 444333 4446666766
Q ss_pred CCCEEEEEc-CCcEEEE--EcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744 200 EGPWIFIGV-TNFVKAW--NTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 200 ~~~~l~~~~-d~~i~~w--d~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~ 258 (308)
-+.++++|. ...+.++ +....+.. ........++++.+-++ .++.+..+|.+.++....
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 677888887 5666655 54333333 23334557889988844 899999999999998874
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.12 E-value=0.021 Score=39.64 Aligned_cols=93 Identities=8% Similarity=0.025 Sum_probs=60.5
Q ss_pred ecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccc
Q 021744 75 ANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV 152 (308)
Q Consensus 75 s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~ 152 (308)
.-+|.. +.|+.|..||+|+-+. .+ ........+..+.....+.++++..+|+|-+|+-... +...+. +..
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~e--~~--~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R---lWRiKS-K~~ 82 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGDE--IV--AEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR---LWRIKS-KNQ 82 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCCc--EE--EEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce---eeeecc-CCC
Confidence 345545 9999999999998641 11 2223334466666666678899999999999986443 444443 333
Q ss_pred eEEEEEe-C--CC-CEEEEeeCCCcEE
Q 021744 153 VSGITLP-S--GS-DKLYSGSKDETVR 175 (308)
Q Consensus 153 v~~~~~~-~--~~-~~l~s~s~dg~v~ 175 (308)
+.++++. . || ..|++|-.+|.|-
T Consensus 83 ~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 83 VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5665543 3 33 3588888888764
No 351
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0039 Score=55.50 Aligned_cols=85 Identities=13% Similarity=-0.016 Sum_probs=67.0
Q ss_pred eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceE-EEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEE-
Q 021744 111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAGV- 187 (308)
Q Consensus 111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~- 187 (308)
+..+.++|.-.. +.+..+|.|-+.-++ - +.+.++.-|...++ +++|.|||+.++.|-.||+|++.|++++..+..
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~-qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-W-QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-c-ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 555667777655 778888888888776 3 56777776666666 999999999999999999999999999988877
Q ss_pred -EeCCCeeEEE
Q 021744 188 -INLGGEVGCM 197 (308)
Q Consensus 188 -~~~~~~v~~~ 197 (308)
+.....+.+.
T Consensus 101 ~~s~e~~is~~ 111 (665)
T KOG4640|consen 101 LFSVETDISKG 111 (665)
T ss_pred ccccccchhee
Confidence 3355555555
No 352
>PHA02713 hypothetical protein; Provisional
Probab=97.11 E-value=0.076 Score=48.87 Aligned_cols=181 Identities=11% Similarity=0.091 Sum_probs=91.8
Q ss_pred cCCCe-eeccCC------CcEEEEECCCCCCcccccceeeeeeeeeeeecCCc-eEEeeCCC-----eEEEEEcCCCc-e
Q 021744 76 NNTWG-RNNNFN------NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN-CMYGEKCK-----FLHSWTVGDGF-K 141 (308)
Q Consensus 76 ~~g~~-~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~-----~i~iwd~~~~~-~ 141 (308)
-++.. +.|+.+ .++..||..+..............-..+. ..++. ++.|+.++ .+..||+.+.. .
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 45566 778754 34667787655432111111111111222 23443 37777653 47889988662 1
Q ss_pred eeeEeeCcccceEEEEEeCCCCEEEEeeCCC-----------------------cEEEEeCCCCeEEEEEeC--C-CeeE
Q 021744 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-----------------------TVRVWDCASGQCAGVINL--G-GEVG 195 (308)
Q Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-----------------------~v~~wd~~~~~~~~~~~~--~-~~v~ 195 (308)
.+..+.........+. -++...+.|+.++ ++..||.++.+-...-.. . ....
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 1112221111111222 2566666676542 477788777643222111 1 1112
Q ss_pred EEEcCCCEEEEEc-C------CcEEEEEcCC-Ccee---eeeCCCCCEEEEEEeCC-EEEEEcCCC--eEEEEEcCCCC
Q 021744 196 CMISEGPWIFIGV-T------NFVKAWNTQT-NTDL---SLSGPVGQVYAMAVGND-LLFAGTQDG--AILAWKFNVTT 260 (308)
Q Consensus 196 ~~~~~~~~l~~~~-d------~~i~~wd~~~-~~~~---~~~~~~~~v~~~~~~~~-~l~~g~~dg--~i~iwd~~~~~ 260 (308)
....++++.+.|+ + ..+..||..+ .+-. .+....... .++...+ +.++|+.++ .+..||..+.+
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 3345677766664 3 2467899988 5543 233333333 3444445 788888888 67788887764
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.10 E-value=0.0018 Score=34.72 Aligned_cols=32 Identities=34% Similarity=0.640 Sum_probs=28.1
Q ss_pred eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744 224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (308)
Q Consensus 224 ~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd 255 (308)
.+..|...+.++.+.++ .+++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 55678889999999987 899999999999996
No 354
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.12 Score=42.14 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=73.6
Q ss_pred CCccccccceeEEecCCCe--eeccCCCc-EEEEECCCCCCccccccee-eeeeeeeeeecCCceEEeeC------CCeE
Q 021744 62 PAATANGAAAKRFANNTWG--RNNNFNNH-SNNYRAGNSKNSNINNRAV-IKTDILCRNWVQGNCMYGEK------CKFL 131 (308)
Q Consensus 62 ~~~~gh~~~~i~~s~~g~~--~s~~~d~~-i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~------d~~i 131 (308)
.|.++| .|+++|.-.. +.+-.=|+ ..++|.+..+.+....... ...----.|+++|..+++.+ -|.|
T Consensus 66 lpaR~H---gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 66 LPARGH---GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVI 142 (366)
T ss_pred cccccC---CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceE
Confidence 345566 4788888777 55556566 4788987776543222111 11122346899998866554 4789
Q ss_pred EEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744 132 HSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS 169 (308)
Q Consensus 132 ~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 169 (308)
-|||.+.+.+.+.++..|.-....+.+.+||+.++.+.
T Consensus 143 GvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 143 GVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred EEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 99999988778888988888888999999999887764
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.04 E-value=0.025 Score=53.24 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=87.5
Q ss_pred eCCCeEEEEEcCCCceeeeEeeCcccc-eEEEEEeC-----CCCEEEEeeCCCcEEEEeCCCCe--EEE----EEeCCCe
Q 021744 126 EKCKFLHSWTVGDGFKLLTQLEGHQKV-VSGITLPS-----GSDKLYSGSKDETVRVWDCASGQ--CAG----VINLGGE 193 (308)
Q Consensus 126 ~~d~~i~iwd~~~~~~~~~~~~~h~~~-v~~~~~~~-----~~~~l~s~s~dg~v~~wd~~~~~--~~~----~~~~~~~ 193 (308)
.....|+-.|++.+ +.+..++.|... |..++-.. .....+.|-.+..+..||.+-.. .+. .+.....
T Consensus 501 ~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 35678899999999 899999887654 55554321 13456777788899999998532 232 1223445
Q ss_pred eEEEE-cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEc
Q 021744 194 VGCMI-SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKF 256 (308)
Q Consensus 194 v~~~~-~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~ 256 (308)
..|+. ....+||+|+ +|.|++||--..... .+.+-..+|..|..+.| ..+.++.+..+.+++.
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 56664 3445666666 999999995433333 56677889999999999 3333344568888875
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.01 E-value=0.22 Score=44.00 Aligned_cols=163 Identities=7% Similarity=-0.037 Sum_probs=81.7
Q ss_pred cEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe-------eCcccceEEEEEeC
Q 021744 88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL-------EGHQKVVSGITLPS 160 (308)
Q Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-------~~h~~~v~~~~~~~ 160 (308)
.|+||+.. |+.+....- ....+..+.|..+..++.-..||.+++||+... . ...+ .-....+....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w-~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~-~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPW-DSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE-F-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEE-CCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc-e-eechhhhccccCcccccccccccCC
Confidence 58999874 444322211 225578888888778888889999999998744 2 1111 11111222223333
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCe-EEEEEe-CCCe------------eEEEEcCCCEEE-EEcCCcEEEEEcCCCceeee
Q 021744 161 GSDKLYSGSKDETVRVWDCASGQ-CAGVIN-LGGE------------VGCMISEGPWIF-IGVTNFVKAWNTQTNTDLSL 225 (308)
Q Consensus 161 ~~~~l~s~s~dg~v~~wd~~~~~-~~~~~~-~~~~------------v~~~~~~~~~l~-~~~d~~i~~wd~~~~~~~~~ 225 (308)
+|-.+++ .++.+.+-+-.... ..+.+. .... +..+..+....+ ...++.+.+.+-...+. +
T Consensus 138 ~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--i 213 (410)
T PF04841_consen 138 NGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--I 213 (410)
T ss_pred CCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--c
Confidence 4433333 33444433222211 111111 0000 001112222222 22334444333222111 1
Q ss_pred eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744 226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 226 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~ 259 (308)
...+++..|++||+ ++|.-..+|.+.+....-.
T Consensus 214 -~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 214 -DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred -cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 12358999999999 8888888999988876544
No 357
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.91 E-value=0.34 Score=44.70 Aligned_cols=225 Identities=12% Similarity=0.114 Sum_probs=115.4
Q ss_pred CCCCCceEEecCC------CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCC------CcE
Q 021744 23 GGGGGLSTADTRQ------KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFN------NHS 89 (308)
Q Consensus 23 ~~~~~~~~s~s~d------~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d------~~i 89 (308)
+..+.+++.|+.+ ..+..+|..+..+..+. +.+.+...+ ++++..+ .. ++|+.| .++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a------~m~~~r~~~---~~~~~~~-~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA------PMPSPRCRV---GVAVLNG-KLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC------CCCcccccc---cEEEECC-EEEEEccccCCCcccceE
Confidence 4445667777766 46667776665222111 111111111 2344443 55 999999 356
Q ss_pred EEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCC-----eEEEEEcCCCc-eeeeEeeCcccceEEEEE-eCCC
Q 021744 90 NNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCK-----FLHSWTVGDGF-KLLTQLEGHQKVVSGITL-PSGS 162 (308)
Q Consensus 90 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-----~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~-~~~~ 162 (308)
-.||..+.+......-.....-..+.....-.++.|+.|| .+..||..+.+ ..+.. ........+. .-++
T Consensus 352 e~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLGG 428 (571)
T ss_pred EEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC---CCcceeeeEEEEECC
Confidence 6777766654321111111112222222222448888875 46678877652 11111 1112222222 2256
Q ss_pred CEEEEeeCCC------cEEEEeCCCCeEEEEEeCC---CeeEEEEcCCCEEEEEc-CC-----cEEEEEcCCCceeeee-
Q 021744 163 DKLYSGSKDE------TVRVWDCASGQCAGVINLG---GEVGCMISEGPWIFIGV-TN-----FVKAWNTQTNTDLSLS- 226 (308)
Q Consensus 163 ~~l~s~s~dg------~v~~wd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-d~-----~i~~wd~~~~~~~~~~- 226 (308)
...+.|+.++ ++..||..+++-...-... .......-++.+.++|+ ++ +|..||..+.+...+.
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 6777887554 5678888876544332211 11223356777777765 54 4778999988766332
Q ss_pred -CCCCCEEEEEEeCC-EEEEEcCCCe-----EEEEEcCCCC
Q 021744 227 -GPVGQVYAMAVGND-LLFAGTQDGA-----ILAWKFNVTT 260 (308)
Q Consensus 227 -~~~~~v~~~~~~~~-~l~~g~~dg~-----i~iwd~~~~~ 260 (308)
........++...+ ..+.|+.||. |..||..+.+
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 12222233344445 7778887764 6666655543
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.26 Score=43.07 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=122.8
Q ss_pred eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEee--CCCeEEEEEcCCCceeee
Q 021744 71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGE--KCKFLHSWTVGDGFKLLT 144 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~--~d~~i~iwd~~~~~~~~~ 144 (308)
.+++++.+.. +....++.|.+.|.++.........+ .....+.+.+++.. ++.. .++.+.+.|..+. +.+.
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~ 154 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTA 154 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEE
Confidence 6899999986 67767789999997555433222111 14667788888854 4444 4789999999888 5555
Q ss_pred EeeCcccceEEEEEeCCCCEEEEe-eCCCcEEEEeCCCCeEEE-E----Ee-CCCee-EEEEcCCCEEEEEc--C--CcE
Q 021744 145 QLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAG-V----IN-LGGEV-GCMISEGPWIFIGV--T--NFV 212 (308)
Q Consensus 145 ~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~v~~wd~~~~~~~~-~----~~-~~~~v-~~~~~~~~~l~~~~--d--~~i 212 (308)
....-..+ ..++++|+++.++.. ..++.|.+.|..+..... . .. ...+. ..+.+++..+.+.. + +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 55433344 899999999976555 478899999977665553 1 11 22332 23457888666543 3 588
Q ss_pred EEEEcCCCceeee--eCCCCCEEEEEEeCC--EEEEE-cCCCeEEEEEcCCC
Q 021744 213 KAWNTQTNTDLSL--SGPVGQVYAMAVGND--LLFAG-TQDGAILAWKFNVT 259 (308)
Q Consensus 213 ~~wd~~~~~~~~~--~~~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~ 259 (308)
...|..++..... .........+.++|+ .+... +..+.+.+-|..+.
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 9999998877733 221114567888888 33333 44578999998875
No 359
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.89 E-value=0.2 Score=48.52 Aligned_cols=106 Identities=10% Similarity=0.129 Sum_probs=65.9
Q ss_pred EEEEEeCCCCEEEEe-----eCCCcEEEEeCCCCeEEEEEe-CC--CeeEEEEcCCCEEEEE----cCCcEEEEEcCCCc
Q 021744 154 SGITLPSGSDKLYSG-----SKDETVRVWDCASGQCAGVIN-LG--GEVGCMISEGPWIFIG----VTNFVKAWNTQTNT 221 (308)
Q Consensus 154 ~~~~~~~~~~~l~s~-----s~dg~v~~wd~~~~~~~~~~~-~~--~~v~~~~~~~~~l~~~----~d~~i~~wd~~~~~ 221 (308)
+.+.|--||+++++. ..-+.+++||-+ |..-..-. .. ....+.-|.|.++++- +++.|.+|.-+.-+
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 578999999998773 333799999976 43222211 11 2222334778888852 36679998754332
Q ss_pred e---e-eeeCCCCCEEEEEEeCC--EEEE---EcCCCeEEEEEcCCCC
Q 021744 222 D---L-SLSGPVGQVYAMAVGND--LLFA---GTQDGAILAWKFNVTT 260 (308)
Q Consensus 222 ~---~-~~~~~~~~v~~~~~~~~--~l~~---g~~dg~i~iwd~~~~~ 260 (308)
. . .+.....++..++|+.+ .|+. ......|++|-+.+-.
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 1 1 23333445899999987 6655 4455569999877643
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.87 E-value=0.00075 Score=60.01 Aligned_cols=188 Identities=9% Similarity=0.013 Sum_probs=111.5
Q ss_pred eeEEecCCC--e-eeccCCCcEEEEECCCCC-CcccccceeeeeeeeeeeecCC-ceEEee-----CCCeEEEEEcCCCc
Q 021744 71 AKRFANNTW--G-RNNNFNNHSNNYRAGNSK-NSNINNRAVIKTDILCRNWVQG-NCMYGE-----KCKFLHSWTVGDGF 140 (308)
Q Consensus 71 ~i~~s~~g~--~-~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~g~-----~d~~i~iwd~~~~~ 140 (308)
|++..-+.. + +.|..+|.|-+-.+.... ...+....+.....+.+|.+-. +.++++ .|..+.|||+.++-
T Consensus 61 cva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~l 140 (783)
T KOG1008|consen 61 CVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLL 140 (783)
T ss_pred eehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccccc
Confidence 555554433 3 888899999887774332 1111222233334555665543 223322 35679999998661
Q ss_pred e-e--eeEeeC-cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC-CeEEEEEeCCC-eeEEEEc-CCCEEEEEcCCcEE
Q 021744 141 K-L--LTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGG-EVGCMIS-EGPWIFIGVTNFVK 213 (308)
Q Consensus 141 ~-~--~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~~~~-~v~~~~~-~~~~l~~~~d~~i~ 213 (308)
. + ...+.+ -.....+++|..+.+++++|...+.++++|++. ......++... .-..+.| ...++++..|+.|.
T Consensus 141 tvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iA 220 (783)
T KOG1008|consen 141 TVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIA 220 (783)
T ss_pred CCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCcee
Confidence 1 1 111111 334556888988888999999999999999983 22222222111 1112234 56788887899999
Q ss_pred EEE-cCCCcee--eeeC----CCCCEEEEEEeCC---EEEEEcC-CCeEEEEEcCC
Q 021744 214 AWN-TQTNTDL--SLSG----PVGQVYAMAVGND---LLFAGTQ-DGAILAWKFNV 258 (308)
Q Consensus 214 ~wd-~~~~~~~--~~~~----~~~~v~~~~~~~~---~l~~g~~-dg~i~iwd~~~ 258 (308)
+|| .+.-+.. .+.. ....+..++|+|. .+++.+. .++|+++|+..
T Consensus 221 iwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 221 IWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 999 4433322 2211 1235899999998 6666554 56899999753
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0086 Score=53.44 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=71.9
Q ss_pred cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeE-EE--EcCCCEEEEEc-CCcEEEEEcCCCceee-
Q 021744 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVG-CM--ISEGPWIFIGV-TNFVKAWNTQTNTDLS- 224 (308)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~-~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~- 224 (308)
..|.-+.|+|.-.++|.+..+|.|.++.++ .+.+.++. ++.+++ ++ -+||++|++|. ||+|++.|..++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467788999999999999999999999988 88888888 666665 54 48999999998 9999999999987762
Q ss_pred -eeCCCCCEEEEEEeCC
Q 021744 225 -LSGPVGQVYAMAVGND 240 (308)
Q Consensus 225 -~~~~~~~v~~~~~~~~ 240 (308)
.......|.++-|.+.
T Consensus 100 ~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDRI 116 (665)
T ss_pred cccccccchheeecccc
Confidence 2334556777777643
No 362
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.78 E-value=0.14 Score=49.63 Aligned_cols=174 Identities=7% Similarity=-0.092 Sum_probs=94.4
Q ss_pred eeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEE
Q 021744 110 TDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (308)
Q Consensus 110 ~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~ 188 (308)
.+..+.|..+... +.+...|.|.+-|..+.. +.....-...|.+++|+||++.++-.+.+.++.+-+- +..++...
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~ 146 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEK 146 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcc
Confidence 4677777777644 778888999988887762 2222234578999999999999999888888777543 23332222
Q ss_pred eC-------CCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEE-----EcCCCeEEE
Q 021744 189 NL-------GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFA-----GTQDGAILA 253 (308)
Q Consensus 189 ~~-------~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~-----g~~dg~i~i 253 (308)
.. ...+..-+-....-+-|+.|.....+....+.. ....-.+.=++++|-.| ++|+ ...-+.|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 11 111111122222222222222222211111111 10011223356888888 6666 333379999
Q ss_pred EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
||-+ + .+-..-......-.+ +|-|.|.++++..
T Consensus 227 ~drE-g----~Lns~se~~~~l~~~LsWkPsgs~iA~iq 260 (1265)
T KOG1920|consen 227 YDRE-G----ALNSTSEPVEGLQHSLSWKPSGSLIAAIQ 260 (1265)
T ss_pred eccc-c----hhhcccCcccccccceeecCCCCeEeeee
Confidence 9987 2 211112222222334 8889988887543
No 363
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.70 E-value=0.006 Score=35.33 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=30.5
Q ss_pred ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE
Q 021744 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (308)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~ 185 (308)
...|..++|+|...++|.++.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 457899999999999999999999999998 55543
No 364
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.63 E-value=0.25 Score=45.52 Aligned_cols=188 Identities=14% Similarity=0.139 Sum_probs=102.3
Q ss_pred CCe-eeccCC------CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCC------CeEEEEEcCCCc-eee
Q 021744 78 TWG-RNNNFN------NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKC------KFLHSWTVGDGF-KLL 143 (308)
Q Consensus 78 g~~-~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d------~~i~iwd~~~~~-~~~ 143 (308)
+.. +.|+.+ .++..+|..+++...............+....+..+++|+.| ..+..||..+.. ..+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 444 777766 357888887664332222222222333444444355888888 456788887762 111
Q ss_pred eEeeCcccceEEEEEeCCCCEEEEeeCCC-----cEEEEeCCCCeEEEEEeCC---CeeEEEEcCCCEEEEEc-C-----
Q 021744 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDE-----TVRVWDCASGQCAGVINLG---GEVGCMISEGPWIFIGV-T----- 209 (308)
Q Consensus 144 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-----~v~~wd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-d----- 209 (308)
..+...... ..++.. ++...+.|+.|| +|-.||..+.+--..-... ........++++.++|+ +
T Consensus 365 a~M~~~R~~-~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 365 APMNTKRSD-FGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNC 442 (571)
T ss_pred CCccCcccc-ceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccc
Confidence 112211111 122222 567778888886 4677887765433222221 12223356777777765 3
Q ss_pred -CcEEEEEcCCCceee---eeCCCCCEEEEEEeCC-EEEEEcCCCe-----EEEEEcCCCCcccccceecc
Q 021744 210 -NFVKAWNTQTNTDLS---LSGPVGQVYAMAVGND-LLFAGTQDGA-----ILAWKFNVTTNCFEPAASLK 270 (308)
Q Consensus 210 -~~i~~wd~~~~~~~~---~~~~~~~v~~~~~~~~-~l~~g~~dg~-----i~iwd~~~~~~~~~~~~~~~ 270 (308)
.++..||..+++... +...... ..++...+ +.+.|+.|+. |..||..+.+. ..+..+.
T Consensus 443 l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W--~~v~~m~ 510 (571)
T KOG4441|consen 443 LNSVECYDPETNTWTLIAPMNTRRSG-FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQW--TMVAPMT 510 (571)
T ss_pred cceEEEEcCCCCceeecCCccccccc-ceEEEECCEEEEECCccCCCccceEEEEcCCCCce--eEcccCc
Confidence 357889998886552 2222222 23555556 7777887763 77788877642 4444343
No 365
>PHA03098 kelch-like protein; Provisional
Probab=96.63 E-value=0.36 Score=44.36 Aligned_cols=200 Identities=14% Similarity=0.118 Sum_probs=95.6
Q ss_pred EEecCCCe-eeccCCC------cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC-----CeEEEEEcCCC
Q 021744 73 RFANNTWG-RNNNFNN------HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC-----KFLHSWTVGDG 139 (308)
Q Consensus 73 ~~s~~g~~-~s~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d-----~~i~iwd~~~~ 139 (308)
+...++.. +.|+.++ .+..||..+.+............-..+. ..++.. +.|+.+ ..+..||+.+.
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 33445555 7777543 4667777665432221111111111112 223434 677754 35677888765
Q ss_pred c-eeeeEeeCcccceEEEEEeCCCCEEEEeeCC------CcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEc-
Q 021744 140 F-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV- 208 (308)
Q Consensus 140 ~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~- 208 (308)
. +....+. +...-.+++. -++...+.|+.+ ..+..||..+.+-...-..+. ...++..++++++.|+
T Consensus 369 ~W~~~~~lp-~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 369 KWREEPPLI-FPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred ceeeCCCcC-cCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc
Confidence 2 1111111 1111112222 245566666632 457888988764332211111 1123345666666654
Q ss_pred C--------CcEEEEEcCCCceeeeeC---CCCCEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCCCcccccceeccc
Q 021744 209 T--------NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGND-LLFAGTQD-----GAILAWKFNVTTNCFEPAASLKV 271 (308)
Q Consensus 209 d--------~~i~~wd~~~~~~~~~~~---~~~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 271 (308)
+ ..+.+||..+.+-..+.. ..... +++...+ +++.|+.+ ..|.+||..+.. +..+..+..
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~ 523 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT--WTLFCKFPK 523 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEEECCEEEEEcCCcCCcccceeEEEeCCCCE--EEecCCCcc
Confidence 2 138889998876553321 11122 2233344 55666653 468888888754 344554444
Q ss_pred cCCCeEE
Q 021744 272 HTDSNRA 278 (308)
Q Consensus 272 ~~~~v~~ 278 (308)
....+..
T Consensus 524 ~~~~~~~ 530 (534)
T PHA03098 524 VIGSLEK 530 (534)
T ss_pred cccceee
Confidence 4444443
No 366
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.62 E-value=0.15 Score=36.64 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=75.4
Q ss_pred EEEEeCCCCEEEEeeCCCcEEEEeCCC--------CeEEEEEeCCCeeEEEE-------cCCCEEEEEcCCcEEEEEcCC
Q 021744 155 GITLPSGSDKLYSGSKDETVRVWDCAS--------GQCAGVINLGGEVGCMI-------SEGPWIFIGVTNFVKAWNTQT 219 (308)
Q Consensus 155 ~~~~~~~~~~l~s~s~dg~v~~wd~~~--------~~~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~~wd~~~ 219 (308)
.-.|+.....|+.++.-|+|.|++... ...+..+.....++++. .....|+.|+...+..||...
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 345666666788888999999998773 34567777888888873 135688899999999999998
Q ss_pred CceeeeeCCCCCEEEEEEe-----CCEEEEEcCCCeEEEEEcCCC
Q 021744 220 NTDLSLSGPVGQVYAMAVG-----NDLLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 220 ~~~~~~~~~~~~v~~~~~~-----~~~l~~g~~dg~i~iwd~~~~ 259 (308)
...+-.+.-.+.|+++.+- +.-++..+.+-.|.-||....
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 8877666666788888873 233333444557777776654
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.42 Score=40.30 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=103.4
Q ss_pred ccCCCCceeEEEeecCCCCCCCC--CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEecC
Q 021744 3 FDAHGGNKRVFHRLGGGGGDGGG--GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFANN 77 (308)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~~ 77 (308)
++.+.|..++|...+........ +..|+++. .-+++++...+... . ....+..+.... .+.+.|+
T Consensus 52 ~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~---t-----~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 52 LDPETGKKRVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKI---T-----LLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred ecCCcCceEEEECCCCcccceeecCCCeEEEEc--cccEEEeccCCcee---E-----EeccccCCCCcCCCCceeEcCC
Confidence 45556668888887666333222 33444443 23444444333110 0 111111111111 5788888
Q ss_pred CCe-eeccC------C---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCC--C----
Q 021744 78 TWG-RNNNF------N---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGD--G---- 139 (308)
Q Consensus 78 g~~-~s~~~------d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~--~---- 139 (308)
|.+ ++-.. + ..=.||-+............+-...+.++|+|++.. ++-+..+.|+-|+... +
T Consensus 122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~ 201 (307)
T COG3386 122 GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG 201 (307)
T ss_pred CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC
Confidence 888 44333 0 112455554221111112222333677899999955 5555668888887652 1
Q ss_pred ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC-cEEEEeCCCCeEEEEEeCC-CeeEEEE---cCCCEEEE
Q 021744 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-TVRVWDCASGQCAGVINLG-GEVGCMI---SEGPWIFI 206 (308)
Q Consensus 140 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~v~~wd~~~~~~~~~~~~~-~~v~~~~---~~~~~l~~ 206 (308)
......+....+..-.++...+|.+.+++-.+| .|..|+.. ++.+..+..+ ..+++.+ ++.+.|++
T Consensus 202 ~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 202 RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 111222233456667888888888876555554 89999988 9999988855 4444442 34455554
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.47 E-value=0.57 Score=41.40 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=36.7
Q ss_pred eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 130 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~ 181 (308)
.|+||+.... .+.++.-..+.|.++.|+.+ +.|+....||.++++|+..
T Consensus 62 ~I~iys~sG~--ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGK--LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCC--EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 5888887654 34444433489999999874 5677788999999999873
No 369
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.44 E-value=0.0058 Score=56.41 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=68.4
Q ss_pred EcCCCEEEEEc-----CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc
Q 021744 198 ISEGPWIFIGV-----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK 270 (308)
Q Consensus 198 ~~~~~~l~~~~-----d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (308)
.|...++++++ .|.|.+| +.+|++.+-...+-.+++++|+|. .|+.|-.-|.+.+|...+. +......
T Consensus 24 HPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~----e~htv~~ 98 (1416)
T KOG3617|consen 24 HPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT----ETHTVVE 98 (1416)
T ss_pred CCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCc----eeeeecc
Confidence 34455555432 4577777 456666533333445678999999 7888889999999998885 4444556
Q ss_pred ccCCCeEE-EEecCCCeEEEee---ceEEEEee
Q 021744 271 VHTDSNRA-HFSRDVTSLLGSV---SFIMFIGQ 299 (308)
Q Consensus 271 ~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~~ 299 (308)
.|..++.. .||++|..|++.- ++.+|-..
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 89999999 9999999998654 55555544
No 370
>PHA02713 hypothetical protein; Provisional
Probab=96.37 E-value=0.15 Score=46.93 Aligned_cols=148 Identities=7% Similarity=0.023 Sum_probs=75.2
Q ss_pred EEecCCCe-eeccCCC-----cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC-----------------
Q 021744 73 RFANNTWG-RNNNFNN-----HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC----------------- 128 (308)
Q Consensus 73 ~~s~~g~~-~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d----------------- 128 (308)
...-+|.. +.|+.++ ++..||..+.+............-..+. ..++.. +.|+.+
T Consensus 347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCccccccccccccccccc
Confidence 33456666 8888764 4788998765432211111111111111 224443 666654
Q ss_pred ------CeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCC------CcEEEEeCCC-CeEE--EEEeC-C
Q 021744 129 ------KFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCAS-GQCA--GVINL-G 191 (308)
Q Consensus 129 ------~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~v~~wd~~~-~~~~--~~~~~-~ 191 (308)
..+..||+.+.. ..+..+...... .+++.. +++..+.|+.+ ..+..||.++ .+-. ..+.. .
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCccccc-CcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 347788887762 112222111111 123322 45555666654 2467899887 4432 22221 1
Q ss_pred CeeEEEEcCCCEEEEEc-CC--cEEEEEcCCCcee
Q 021744 192 GEVGCMISEGPWIFIGV-TN--FVKAWNTQTNTDL 223 (308)
Q Consensus 192 ~~v~~~~~~~~~l~~~~-d~--~i~~wd~~~~~~~ 223 (308)
........++++.++|+ ++ .+..||..+.+-.
T Consensus 504 ~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 504 SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ccceeEEECCEEEEEeeecceeehhhcCccccccc
Confidence 12233356788877776 66 7788888887655
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=0.012 Score=46.06 Aligned_cols=133 Identities=15% Similarity=0.116 Sum_probs=76.2
Q ss_pred EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE-EEEe-CCCeeEEEEcC
Q 021744 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA-GVIN-LGGEVGCMISE 200 (308)
Q Consensus 123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~-~~~~-~~~~v~~~~~~ 200 (308)
...+.++.|+-++++..+...+.-.-|... ...-.-+..++.|+.+|.|.+|+..-.-.. .... ....+.+..|.
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 345667777777765432111111112222 122223467999999999999988732111 1111 33455566665
Q ss_pred CC---EEEEEc-CCcEEEEEcCCCcee-eeeCCC-CCEEEEEEe-CC-EEEEE--cCCCeEEEEEcCC
Q 021744 201 GP---WIFIGV-TNFVKAWNTQTNTDL-SLSGPV-GQVYAMAVG-ND-LLFAG--TQDGAILAWKFNV 258 (308)
Q Consensus 201 ~~---~l~~~~-d~~i~~wd~~~~~~~-~~~~~~-~~v~~~~~~-~~-~l~~g--~~dg~i~iwd~~~ 258 (308)
++ +..++. ++.|+.|+....+.. ....|. .++..+..+ .+ .++.+ |.|..++.|++..
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 43 444554 999999999888777 444555 344433333 33 66666 6777777887764
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.18 Score=48.33 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=62.9
Q ss_pred eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE---
Q 021744 122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--- 197 (308)
Q Consensus 122 ~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--- 197 (308)
.+.|+..|.+-..|+...-.+...=+.-.++|++++|+.+|..++.|-.+|.|.+||+.+++.++.+. +..+...+
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 36677888888888766412222222346899999999999999999999999999999999988887 45554443
Q ss_pred --EcCCCEEEEEc
Q 021744 198 --ISEGPWIFIGV 208 (308)
Q Consensus 198 --~~~~~~l~~~~ 208 (308)
..++..+.++.
T Consensus 182 ~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSD 194 (1206)
T ss_pred EEeCCCcEEEEcc
Confidence 24455455554
No 373
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.15 E-value=0.77 Score=39.71 Aligned_cols=83 Identities=11% Similarity=-0.070 Sum_probs=52.1
Q ss_pred CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeee-EeeC-------c-------
Q 021744 85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLT-QLEG-------H------- 149 (308)
Q Consensus 85 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~-~~~~-------h------- 149 (308)
..+.+.|+|+++++.. .+...........++|+|..++--.++.|.+++..++ +..+ +..| -
T Consensus 21 ~~~~y~i~d~~~~~~~--~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 21 FKGDYYIYDIETGEIT--PLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG-QETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEEETTTTEEE--ESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTS-EEEESES--TTTEEESB--HHHHH
T ss_pred cceeEEEEecCCCceE--ECcCCccccccceeecCCCeeEEEecCceEEEECCCC-CeEEeccccceeEEcCccceeccc
Confidence 3456899999886443 2222244578889999998866667889999998776 2222 2222 0
Q ss_pred --ccceEEEEEeCCCCEEEEeeC
Q 021744 150 --QKVVSGITLPSGSDKLYSGSK 170 (308)
Q Consensus 150 --~~~v~~~~~~~~~~~l~s~s~ 170 (308)
-+.-..+-|+||+++|+....
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccccceEECCCCCEEEEEEE
Confidence 112356789999998876654
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.19 Score=44.42 Aligned_cols=133 Identities=15% Similarity=0.189 Sum_probs=87.8
Q ss_pred EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC--E-----EEEeeCCCcEEEEeCCCC-e-EEEE-----E
Q 021744 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD--K-----LYSGSKDETVRVWDCASG-Q-CAGV-----I 188 (308)
Q Consensus 123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~-----l~s~s~dg~v~~wd~~~~-~-~~~~-----~ 188 (308)
..+.....++--|++.+ +.+.+.+-|.+ |.-+.+.|+.. . -+.|-.|..|.-||.+-. . .+.. +
T Consensus 350 ~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34556677888899999 88888887766 77788877642 2 244556888999998842 2 1111 1
Q ss_pred eCCCeeEEEE-cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcC
Q 021744 189 NLGGEVGCMI-SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFN 257 (308)
Q Consensus 189 ~~~~~v~~~~-~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~ 257 (308)
.......|+. -...++++|+ +|.|++||--..... .+++...+|..+..+.+ -.+.|+.+..+.+.++.
T Consensus 428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1233445553 3344566555 999999997333333 57788889999999888 44444556688877754
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.02 E-value=1 Score=39.88 Aligned_cols=185 Identities=9% Similarity=-0.000 Sum_probs=104.1
Q ss_pred eeEEecCCCe--eeccCC----CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee--C---------CCeEE
Q 021744 71 AKRFANNTWG--RNNNFN----NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE--K---------CKFLH 132 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~--~---------d~~i~ 132 (308)
...++|+|++ ++-+.. .+|++.|+++++.+...... .....+.|.+++.. +... . ...|+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 5788999998 333333 45999999988655221111 11223788888754 3322 1 34588
Q ss_pred EEEcCCCcee-eeEeeCcccc--eEEEEEeCCCCEEEEeeC-C---CcEEEEeCCCC-----eEEEEEeC-CCeeEEE-E
Q 021744 133 SWTVGDGFKL-LTQLEGHQKV--VSGITLPSGSDKLYSGSK-D---ETVRVWDCASG-----QCAGVINL-GGEVGCM-I 198 (308)
Q Consensus 133 iwd~~~~~~~-~~~~~~h~~~--v~~~~~~~~~~~l~s~s~-d---g~v~~wd~~~~-----~~~~~~~~-~~~v~~~-~ 198 (308)
.|.+.+.... ...+...... ...+..++++++|+..+. . ..+.+.++..+ +....... ......+ .
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 8888876322 2233333322 567888999998764333 2 34777788764 33333332 2332333 3
Q ss_pred cCCCEEEEEc----CCcEEEEEcCCCce---e-eeeCCCC--CEEEEEEeCC-EEEEEcCCC--eEEEEEcC
Q 021744 199 SEGPWIFIGV----TNFVKAWNTQTNTD---L-SLSGPVG--QVYAMAVGND-LLFAGTQDG--AILAWKFN 257 (308)
Q Consensus 199 ~~~~~l~~~~----d~~i~~wd~~~~~~---~-~~~~~~~--~v~~~~~~~~-~l~~g~~dg--~i~iwd~~ 257 (308)
..+.+++.+. .+.|...++..... . .+..+.. .+..+....+ +++.-..++ .|+++++.
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 3444555432 45777788887653 2 4445554 5777887778 666666665 47888888
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.01 E-value=0.028 Score=44.07 Aligned_cols=99 Identities=9% Similarity=0.068 Sum_probs=60.3
Q ss_pred eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeec--CCce-EEeeCCCeEEEEEcCCCceeeeEeeCcc-cceEEE
Q 021744 81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWV--QGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGI 156 (308)
Q Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~-~~v~~~ 156 (308)
+.|+.++.|.+|..+--.... ...........+.+.. ++.+ .+++.|+.|+.|++... +.+...-.|+ .++..+
T Consensus 74 ~vG~~dg~v~~~n~n~~g~~~-d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 74 MVGTSDGAVYVFNWNLEGAHS-DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEEL 151 (238)
T ss_pred EeecccceEEEecCCccchHH-HhhhcccccceeccccccccceeEEeccCCceeeeccccC-ceeeeeccccCCCccee
Confidence 889999999999885111100 0111111122222222 2235 77889999999999887 5565555666 555566
Q ss_pred EEeCCCCEEEEe--eCCCcEEEEeCCC
Q 021744 157 TLPSGSDKLYSG--SKDETVRVWDCAS 181 (308)
Q Consensus 157 ~~~~~~~~l~s~--s~dg~v~~wd~~~ 181 (308)
.....++.+++. |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666566666666 6677777777664
No 377
>PHA03098 kelch-like protein; Provisional
Probab=95.99 E-value=0.82 Score=42.00 Aligned_cols=149 Identities=12% Similarity=0.055 Sum_probs=71.6
Q ss_pred cCCCe-eeccCC-----CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC------CeEEEEEcCCCc-e
Q 021744 76 NNTWG-RNNNFN-----NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC------KFLHSWTVGDGF-K 141 (308)
Q Consensus 76 ~~g~~-~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d------~~i~iwd~~~~~-~ 141 (308)
-++.. +.|+.+ .++..||..+.+............-..+. ..++.. +.|+.+ ..+..||+.+.. .
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 35666 777765 34677887655432211111111111122 223433 666632 467889987652 1
Q ss_pred eeeEeeCcccceEEEEEeCCCCEEEEeeCC--------CcEEEEeCCCCeEEEEEeCC---CeeEEEEcCCCEEEEEc-C
Q 021744 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKD--------ETVRVWDCASGQCAGVINLG---GEVGCMISEGPWIFIGV-T 209 (308)
Q Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d--------g~v~~wd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-d 209 (308)
.+..+...... .+++. .++...+.|+.+ ..+.+||..+.+-...-... ........++++++.|+ +
T Consensus 420 ~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 497 (534)
T PHA03098 420 KGSPLPISHYG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDK 497 (534)
T ss_pred ecCCCCccccC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCc
Confidence 11111111111 12222 245555666543 23888898876533221111 11122234667666664 2
Q ss_pred -----CcEEEEEcCCCceeeeeC
Q 021744 210 -----NFVKAWNTQTNTDLSLSG 227 (308)
Q Consensus 210 -----~~i~~wd~~~~~~~~~~~ 227 (308)
+.+.+||..+.+-..+..
T Consensus 498 ~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 498 YEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCcccceeEEEeCCCCEEEecCC
Confidence 368889988876554433
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.90 E-value=0.034 Score=32.16 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=27.3
Q ss_pred CCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 228 ~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~ 258 (308)
....|..++|+|. ++|.++.+|.|.++.+.-
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 3457999999999 999999999999999943
No 379
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.84 E-value=1.1 Score=38.75 Aligned_cols=167 Identities=14% Similarity=0.175 Sum_probs=74.7
Q ss_pred CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-CEEEEeeC---CC-cEEEEeCCC-CeEEEEEe--CCCeeEE---
Q 021744 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSK---DE-TVRVWDCAS-GQCAGVIN--LGGEVGC--- 196 (308)
Q Consensus 128 d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~---dg-~v~~wd~~~-~~~~~~~~--~~~~v~~--- 196 (308)
...|...|+.++ +. ..+..-+..+..+.|+|.. .+|+-|-+ +. .-++|-+++ +...+.+. .+..+..
T Consensus 167 ~~~i~~idl~tG-~~-~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEf 244 (386)
T PF14583_consen 167 HCRIFTIDLKTG-ER-KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEF 244 (386)
T ss_dssp -EEEEEEETTT---E-EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEE
T ss_pred CceEEEEECCCC-ce-eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccc
Confidence 345666677777 33 3333356778889999865 44555543 22 236776654 33333333 1222221
Q ss_pred EEcCCCEEE-EEc-----CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEc-CC----------------CeEE
Q 021744 197 MISEGPWIF-IGV-----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGT-QD----------------GAIL 252 (308)
Q Consensus 197 ~~~~~~~l~-~~~-----d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~-~d----------------g~i~ 252 (308)
+.++|..|. .+. +..|.-+|+.+++...+..- .+..-+-.++| .|++|. .| -.|+
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 247887665 332 33577788888765533221 13344555667 444332 22 1466
Q ss_pred EEEcCCCCccccccee-------ccccCCC--eEEEEecCCCeEE-Eee---ceEEEEee
Q 021744 253 AWKFNVTTNCFEPAAS-------LKVHTDS--NRAHFSRDVTSLL-GSV---SFIMFIGQ 299 (308)
Q Consensus 253 iwd~~~~~~~~~~~~~-------~~~~~~~--v~~~~s~d~~~l~-~s~---s~~i~~~~ 299 (308)
++++..+.. ..+.. +.++... ..-.|+|||++++ .|- ...||...
T Consensus 324 ~~~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 324 LFDVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred EeccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 777776432 11111 1222222 2229999999988 443 45566544
No 380
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.66 E-value=1.1 Score=37.74 Aligned_cols=199 Identities=14% Similarity=0.086 Sum_probs=105.5
Q ss_pred CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCc--c-
Q 021744 25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNS--N- 101 (308)
Q Consensus 25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~--~- 101 (308)
.+.++.+.-..+.|.-|+..++.. +..+.+.. -.....+...+.++++.. -+.+++.+++... .
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g~~-------~~~~~p~~----~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETGKK-------RVFPSPGG----FSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLA 102 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcCce-------EEEECCCC----cccceeecCCCeEEEEcc--ccEEEeccCCceeEEec
Confidence 345677777888888888775511 00111110 011234444444433222 2455665433221 0
Q ss_pred cccceee-eeeeeeeeecCCceEEeeCC------------CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEe
Q 021744 102 INNRAVI-KTDILCRNWVQGNCMYGEKC------------KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG 168 (308)
Q Consensus 102 ~~~~~~~-~~~~~~~~~~~~~~~~g~~d------------~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 168 (308)
....... ...+.+...++|.+.++... |.++.++. .+ ..++.+..+-..-+.++|+||++.|+.+
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECCCCCEEEEE
Confidence 0111111 12445666677766444332 34555554 33 4455555556666899999999877655
Q ss_pred e-CCCcEEEEeCCC--Ce---EE-EEEe-C-CCe--eEEEEcCCCEEEEEc-CC-cEEEEEcCCCcee-eeeCCCCCEEE
Q 021744 169 S-KDETVRVWDCAS--GQ---CA-GVIN-L-GGE--VGCMISEGPWIFIGV-TN-FVKAWNTQTNTDL-SLSGPVGQVYA 234 (308)
Q Consensus 169 s-~dg~v~~wd~~~--~~---~~-~~~~-~-~~~--v~~~~~~~~~l~~~~-d~-~i~~wd~~~~~~~-~~~~~~~~v~~ 234 (308)
. ..+.|.-|++.. +. .. .... . .+. -.++-.+|.+.+++. .+ .|..|+.. ++++ .+.-+...+++
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 4 457888887752 11 11 1111 1 111 123346677765444 44 99999998 6666 55555577888
Q ss_pred EEEeC
Q 021744 235 MAVGN 239 (308)
Q Consensus 235 ~~~~~ 239 (308)
++|-.
T Consensus 260 ~~FgG 264 (307)
T COG3386 260 PAFGG 264 (307)
T ss_pred ceEeC
Confidence 88865
No 381
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=1.5 Score=38.44 Aligned_cols=213 Identities=15% Similarity=0.098 Sum_probs=126.8
Q ss_pred eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEe
Q 021744 71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQL 146 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~ 146 (308)
.+.+.|++.. ++-.....+.+-+.. ..........-......+..++.+.. +....++.|.+.|..+. ......
T Consensus 35 ~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~~~~ 112 (381)
T COG3391 35 GVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVLGSI 112 (381)
T ss_pred eeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccc-ceeeEe
Confidence 4788888855 333333344444443 11110000000012345566666654 55556899999997776 444443
Q ss_pred eCcccceEEEEEeCCCCEEEEeeC---CCcEEEEeCCCCeEEEEEeCC-Cee-EEEEcCCCEEEEEc--CCcEEEEEcCC
Q 021744 147 EGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLG-GEV-GCMISEGPWIFIGV--TNFVKAWNTQT 219 (308)
Q Consensus 147 ~~h~~~v~~~~~~~~~~~l~s~s~---dg~v~~wd~~~~~~~~~~~~~-~~v-~~~~~~~~~l~~~~--d~~i~~wd~~~ 219 (308)
.-- .....++++++++.+..+.. ++++.+.|..+.+...+.... .+. ..+.++++.+.+.. ++.|.+.|..+
T Consensus 113 ~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 113 PVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred eec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 322 26678999999988766655 689999999999888886633 333 23468888777654 88999999777
Q ss_pred Cceee-----eeCCCCCEEEEEEeCC--EEE-EEcC--CCeEEEEEcCCCCccccccee-ccccC-CCeEEEEecCCCeE
Q 021744 220 NTDLS-----LSGPVGQVYAMAVGND--LLF-AGTQ--DGAILAWKFNVTTNCFEPAAS-LKVHT-DSNRAHFSRDVTSL 287 (308)
Q Consensus 220 ~~~~~-----~~~~~~~v~~~~~~~~--~l~-~g~~--dg~i~iwd~~~~~~~~~~~~~-~~~~~-~~v~~~~s~d~~~l 287 (308)
..... ..........+.++|+ .+. +-.. ++.+...|..++ ..... +.... .+....++|+|.++
T Consensus 192 ~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~----~v~~~~~~~~~~~~~~v~~~p~g~~~ 267 (381)
T COG3391 192 NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG----NVTATDLPVGSGAPRGVAVDPAGKAA 267 (381)
T ss_pred cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc----eEEEeccccccCCCCceeECCCCCEE
Confidence 65553 1122234466888888 222 2222 368888898885 22222 22222 23333889999988
Q ss_pred EEe
Q 021744 288 LGS 290 (308)
Q Consensus 288 ~~s 290 (308)
.+.
T Consensus 268 yv~ 270 (381)
T COG3391 268 YVA 270 (381)
T ss_pred EEE
Confidence 765
No 382
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.52 E-value=0.62 Score=40.83 Aligned_cols=106 Identities=18% Similarity=0.302 Sum_probs=68.1
Q ss_pred ceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE-------------------------------------------EE
Q 021744 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-------------------------------------------VI 188 (308)
Q Consensus 152 ~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~-------------------------------------------~~ 188 (308)
.|+.+.+.++...|+.+...|.|-+|.....+.-. .+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47788888888888888888888887543211110 01
Q ss_pred e-CCCeeEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee---eeeC------CCCCEEEEEEe-----CC-----EEEEEc
Q 021744 189 N-LGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL---SLSG------PVGQVYAMAVG-----ND-----LLFAGT 246 (308)
Q Consensus 189 ~-~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~---~~~~------~~~~v~~~~~~-----~~-----~l~~g~ 246 (308)
. ..++++++ .++=.++++|+ +|.+.+.|+|....+ .+.. ....++++.|. .| .+++|+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 1 22445555 35667899888 899999999877655 1222 23468888886 12 789999
Q ss_pred CCCeEEEEEcC
Q 021744 247 QDGAILAWKFN 257 (308)
Q Consensus 247 ~dg~i~iwd~~ 257 (308)
..|.+.+|.+.
T Consensus 163 n~G~v~~fkIl 173 (395)
T PF08596_consen 163 NSGNVLTFKIL 173 (395)
T ss_dssp TTSEEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999999886
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.49 E-value=1 Score=41.60 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=60.8
Q ss_pred cCCCEEEEEcC-CcEEEEEcCCCcee--eeeCCCCCEEEEEEeC--C--EEEEEcCCCeEEEEEc-----CCCCcccccc
Q 021744 199 SEGPWIFIGVT-NFVKAWNTQTNTDL--SLSGPVGQVYAMAVGN--D--LLFAGTQDGAILAWKF-----NVTTNCFEPA 266 (308)
Q Consensus 199 ~~~~~l~~~~d-~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~--~--~l~~g~~dg~i~iwd~-----~~~~~~~~~~ 266 (308)
+-++..++..+ ..+.+||.+.+... ......+.|..+.|.. + .+++-+..+.|.+|-- ....+.+.++
T Consensus 39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 34555555554 48999999988755 1224577899999964 4 5666667778888743 3333334555
Q ss_pred eecc--ccC-CCeEE-EEecCCCeEEEee
Q 021744 267 ASLK--VHT-DSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 267 ~~~~--~~~-~~v~~-~~s~d~~~l~~s~ 291 (308)
..+. .++ .+|.. .|-++|.++++++
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred EEEEeecCCCCCccceeEecCCeEEEEeC
Confidence 5543 343 56777 9999997777665
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.46 E-value=2 Score=39.35 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=44.7
Q ss_pred CcEEEEEcCCCcee-eeeCCCCCEEE-EEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE--EEecCCC
Q 021744 210 NFVKAWNTQTNTDL-SLSGPVGQVYA-MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA--HFSRDVT 285 (308)
Q Consensus 210 ~~i~~wd~~~~~~~-~~~~~~~~v~~-~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--~~s~d~~ 285 (308)
+.|.-+|+.+++.. ..........+ +.....+++.++.+|.++.+|.+++ +++.+.+........ .|.-+|+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TG----e~lw~~~~g~~~~a~P~ty~~~G~ 516 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTG----EELWKFKTGSGIVGPPVTYEQDGK 516 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCC----CEeEEEeCCCCceecCEEEEeCCE
Confidence 45778888888877 33322111122 2333347777888999999999999 555555543333322 4455665
Q ss_pred eEE
Q 021744 286 SLL 288 (308)
Q Consensus 286 ~l~ 288 (308)
..+
T Consensus 517 qYv 519 (527)
T TIGR03075 517 QYV 519 (527)
T ss_pred EEE
Confidence 443
No 385
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.46 E-value=1.1 Score=36.41 Aligned_cols=182 Identities=11% Similarity=0.111 Sum_probs=97.8
Q ss_pred eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEee-CCCeEEEEEcCCCc-----ee
Q 021744 71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGE-KCKFLHSWTVGDGF-----KL 142 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i~iwd~~~~~-----~~ 142 (308)
.++|.|+.+. +.....+.|.-.+.+ ++.+......-....-.+.+..++.++... .++.+.++++.... ..
T Consensus 26 GLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~ 104 (248)
T PF06977_consen 26 GLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRAD 104 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEE
T ss_pred ccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhh
Confidence 7999998765 777778888777764 544422211112235566777777775444 58899998884321 11
Q ss_pred eeEee-----CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC---CeEEEEEe---------CCCeeEEE--EcC-CC
Q 021744 143 LTQLE-----GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS---GQCAGVIN---------LGGEVGCM--ISE-GP 202 (308)
Q Consensus 143 ~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~---~~~~~~~~---------~~~~v~~~--~~~-~~ 202 (308)
...+. .+...+-.++|++.++.|+.+-+..-..++.++. ...+.... ....+..+ .+. +.
T Consensus 105 ~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~ 184 (248)
T PF06977_consen 105 VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGH 184 (248)
T ss_dssp EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTE
T ss_pred ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCe
Confidence 11221 2445689999999888887777777677776653 22222221 11122333 233 55
Q ss_pred EEEEEc-CCcEEEEEcCCCcee---eeeCC-------CCCEEEEEEeCC-EEEEEcCCCeEEEE
Q 021744 203 WIFIGV-TNFVKAWNTQTNTDL---SLSGP-------VGQVYAMAVGND-LLFAGTQDGAILAW 254 (308)
Q Consensus 203 ~l~~~~-d~~i~~wd~~~~~~~---~~~~~-------~~~v~~~~~~~~-~l~~g~~dg~i~iw 254 (308)
+++.+. +..|..+| .+++.+ .+... -.+.-.|+|.++ .|...++-+..++|
T Consensus 185 lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 185 LLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 666665 77888888 455544 22221 135788999998 66666777766655
No 386
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.34 E-value=1.1 Score=41.51 Aligned_cols=93 Identities=10% Similarity=0.127 Sum_probs=62.6
Q ss_pred EEeeCCCeEEEEEcCCCceee--eEeeCcccceEEEEEe--CCCCEEEEeeCCCcEEEEeCCC---------CeEEEEEe
Q 021744 123 MYGEKCKFLHSWTVGDGFKLL--TQLEGHQKVVSGITLP--SGSDKLYSGSKDETVRVWDCAS---------GQCAGVIN 189 (308)
Q Consensus 123 ~~g~~d~~i~iwd~~~~~~~~--~~~~~h~~~v~~~~~~--~~~~~l~s~s~dg~v~~wd~~~---------~~~~~~~~ 189 (308)
+..+....+.|||.+.+ ... ..+ ...+.|.++.|. |+++.+++.+....|.++.-.. -.+++.+.
T Consensus 45 ~V~~~~~~LtIWD~~~~-~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSG-VLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEECCCCEEEEEEcCCc-EEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 45555678999999887 322 222 357899999985 6889999999999999985421 23344443
Q ss_pred ----CCCeeEE-EEcCCCEEEEEcCCcEEEEEc
Q 021744 190 ----LGGEVGC-MISEGPWIFIGVTNFVKAWNT 217 (308)
Q Consensus 190 ----~~~~v~~-~~~~~~~l~~~~d~~i~~wd~ 217 (308)
...++.. .+-++..+++|..+.+.++|-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 2234443 355666777777788888764
No 387
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.19 E-value=0.77 Score=40.75 Aligned_cols=134 Identities=10% Similarity=0.093 Sum_probs=85.6
Q ss_pred CCCCEE-EEeeCCCcEEEEeCCCCeEEEEEeCCCeeE-EEEc--------CCCEEEEEcCCcEEEEEcCCCc-eeeeeC-
Q 021744 160 SGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEVG-CMIS--------EGPWIFIGVTNFVKAWNTQTNT-DLSLSG- 227 (308)
Q Consensus 160 ~~~~~l-~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~-~~~~--------~~~~l~~~~d~~i~~wd~~~~~-~~~~~~- 227 (308)
.+.+++ ..+..-..++-.|++.|+.+..+.....+. ..-| +.+.|+.-++..|.-.|.+-.. .+....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 344544 456666788888999999999998554442 2222 3444554456666666765332 221111
Q ss_pred ----CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEE
Q 021744 228 ----PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFI 297 (308)
Q Consensus 228 ----~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~ 297 (308)
......|..-..+ ++|+++..|-|++||--.. +....+.+-...|-. ..+.+|+++++.|-..|.+
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~----rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL 628 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK----RAKTALPGLGDAIKHIDVTANGKHILATCKNYLLL 628 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcc----hhhhcCcccccceeeeEeecCCcEEEEeecceEEE
Confidence 1223344444445 9999999999999996553 334456667777877 8899999999988444443
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.88 E-value=2.5 Score=37.13 Aligned_cols=213 Identities=10% Similarity=0.078 Sum_probs=94.7
Q ss_pred CCCe--eeccCCCcEEEEECCCCC--Cc--cccc--ceee----eeeeeeeeecCCce-EE--ee----CCCeEEEEEcC
Q 021744 77 NTWG--RNNNFNNHSNNYRAGNSK--NS--NINN--RAVI----KTDILCRNWVQGNC-MY--GE----KCKFLHSWTVG 137 (308)
Q Consensus 77 ~g~~--~s~~~d~~i~vwd~~~~~--~~--~~~~--~~~~----~~~~~~~~~~~~~~-~~--g~----~d~~i~iwd~~ 137 (308)
+.++ +-|-.+..|.|.|+.+.. +. +... ..+. ......-..|+|.+ ++ |. .-|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 3445 555577889999996321 11 1100 0111 11333444566744 33 22 23567788877
Q ss_pred CCceeeeEeeCc---ccceEEEEEeCCCCEEEEee--------------------CCCcEEEEeCCCCeEEEEEeCCCe-
Q 021744 138 DGFKLLTQLEGH---QKVVSGITLPSGSDKLYSGS--------------------KDETVRVWDCASGQCAGVINLGGE- 193 (308)
Q Consensus 138 ~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s--------------------~dg~v~~wd~~~~~~~~~~~~~~~- 193 (308)
+. +.+...+.. ...-..+-|.|..+.++|.. ...++.+||+.+.+.++++.....
T Consensus 166 tf-~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TF-EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred cc-cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 66 555555432 22335667788777787775 246899999999999999985432
Q ss_pred -----eEEEE-cCCCEEEEEc--CCcEEEE-EcCCCce-----eeeeCC-----------------CCCEEEEEEeCC--
Q 021744 194 -----VGCMI-SEGPWIFIGV--TNFVKAW-NTQTNTD-----LSLSGP-----------------VGQVYAMAVGND-- 240 (308)
Q Consensus 194 -----v~~~~-~~~~~l~~~~--d~~i~~w-d~~~~~~-----~~~~~~-----------------~~~v~~~~~~~~-- 240 (308)
++.+. |+..+=+++. ..+|..| ....++- +.+... ..-|+.|.+|.|
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 22222 3444444433 5555544 3233321 111110 245789999988
Q ss_pred -EEEEEcCCCeEEEEEcCCCCcccccceecc-c---------------cCCCeEE-EEecCCCeEEEee
Q 021744 241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLK-V---------------HTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 241 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~---------------~~~~v~~-~~s~d~~~l~~s~ 291 (308)
+.+++-.+|.|+.||+..... .+++.++. + -.+.... ..|.||+.|..+.
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~-Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFN-PKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS--EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCC-CcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 556666799999999987632 12222211 0 0112345 7899999988554
No 389
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.83 E-value=2.4 Score=36.69 Aligned_cols=174 Identities=12% Similarity=0.035 Sum_probs=88.0
Q ss_pred eeeeeecCCce-EEee-CC--CeEEEEEcCCCceeeeEeeCcc-cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE
Q 021744 112 ILCRNWVQGNC-MYGE-KC--KFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (308)
Q Consensus 112 ~~~~~~~~~~~-~~g~-~d--~~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~ 186 (308)
..-+|..+|+. +.++ .| ..+++.|+.++ +. ..|..+. .......++|+++.++-.-....|+--|+++.+...
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~-~i-~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATG-EI-TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT--EE-EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccC-EE-EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 33456777744 4444 34 46777788887 34 4444333 333356777888888766666789999999987666
Q ss_pred EEeCCCeeE----E-EEcCCCEEEEEc-----------------------CCcEEEEEcCCCceeeeeCCCCCEEEEEEe
Q 021744 187 VINLGGEVG----C-MISEGPWIFIGV-----------------------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVG 238 (308)
Q Consensus 187 ~~~~~~~v~----~-~~~~~~~l~~~~-----------------------d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~ 238 (308)
.+..+.... - +..++..++... ...|...|+++++...+......+.-+.|+
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fs 196 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFS 196 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccC
Confidence 555333222 1 124555554210 124556688888887666667788899999
Q ss_pred CC---EEEEEcC---CCe-EEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744 239 ND---LLFAGTQ---DGA-ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL 288 (308)
Q Consensus 239 ~~---~l~~g~~---dg~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~ 288 (308)
|. +|+.|.+ +.. -+||-+++.....+++..-. ....+.. -|.|||..+.
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EE
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEE
Confidence 98 5555443 322 36777665432223333222 1234444 8899997665
No 390
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.64 E-value=4.5 Score=39.02 Aligned_cols=169 Identities=15% Similarity=0.173 Sum_probs=99.1
Q ss_pred eEEEEEcCCCceeeeEee--Cc--ccceEEEEEeCC-CCEEEEee----------CCCcEEEEeCCCCeEEE---EEeCC
Q 021744 130 FLHSWTVGDGFKLLTQLE--GH--QKVVSGITLPSG-SDKLYSGS----------KDETVRVWDCASGQCAG---VINLG 191 (308)
Q Consensus 130 ~i~iwd~~~~~~~~~~~~--~h--~~~v~~~~~~~~-~~~l~s~s----------~dg~v~~wd~~~~~~~~---~~~~~ 191 (308)
.++++|-++- +.+...+ .. .-.|.++.|..| +.+++.|. ..|.|.++.+...+.++ +.+..
T Consensus 751 ~l~vlD~nTf-~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 751 FLRVLDQNTF-EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK 829 (1096)
T ss_pred EEEEecCCce-eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence 4667776655 3332221 11 123455557766 56666654 24566677666532222 22234
Q ss_pred CeeEEEE-cCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEe--CCEEEEEcCCCeEEEEEcCCCCcccccce
Q 021744 192 GEVGCMI-SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVG--NDLLFAGTQDGAILAWKFNVTTNCFEPAA 267 (308)
Q Consensus 192 ~~v~~~~-~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 267 (308)
+.+.++. .+|+ +++|-+..|++|+..+.+.+ .-..+..++..+... .|.++.|..-+.+.+...+..+..+..+.
T Consensus 830 Gav~aL~~fngk-llA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA 908 (1096)
T KOG1897|consen 830 GAVYALVEFNGK-LLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA 908 (1096)
T ss_pred cceeehhhhCCe-EEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence 4444443 3454 45566789999999988555 444566666666655 44899999989988887776543222221
Q ss_pred eccccCCCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744 268 SLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNN 301 (308)
Q Consensus 268 ~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~ 301 (308)
-.-+..+.+. .+-.+..++.+-.+..+|+...+
T Consensus 909 -rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 909 -RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred -hhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 1235667777 77666677776667777776644
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.61 E-value=2.1 Score=35.01 Aligned_cols=179 Identities=13% Similarity=0.062 Sum_probs=97.1
Q ss_pred eeeeeeecCCce-EEeeCC--CeEEEEEcCCCceeeeEeeCc-ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE
Q 021744 111 DILCRNWVQGNC-MYGEKC--KFLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (308)
Q Consensus 111 ~~~~~~~~~~~~-~~g~~d--~~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~ 186 (308)
..-+.|..++.. -+.+.- ..|+.+|+.++ +......-. .--=-.++...+ +...-.=.++...+||.++.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg-~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETG-KVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTS-SEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCC-cEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence 334555566655 444443 47899999998 444433311 112234444433 333344467899999999999999
Q ss_pred EEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eee--CC---CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744 187 VINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLS--GP---VGQVYAMAVGND-LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 187 ~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~--~~---~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~ 258 (308)
++..+.+-..++.+++.|+.+. +..++++|..+.+.. .+. .. -..++.+.+-.. +.|=.=....|...|..+
T Consensus 125 ~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 125 TFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp EEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred EEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence 9998777788888888877665 889999999887654 221 11 123445555443 333333334445555555
Q ss_pred CCccc-----ccceec------cccCCCeEE-EEecCCCeEEEee
Q 021744 259 TTNCF-----EPAASL------KVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 259 ~~~~~-----~~~~~~------~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
+.... .+.... .......+. +|.|....+.+++
T Consensus 205 G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 205 GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp -BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 42100 000100 111345677 9999887777665
No 392
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.43 E-value=5.1 Score=38.70 Aligned_cols=173 Identities=11% Similarity=0.126 Sum_probs=91.7
Q ss_pred CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEE--Ec--CC
Q 021744 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCM--IS--EG 201 (308)
Q Consensus 128 d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~--~~--~~ 201 (308)
...||+++-.. ....+. .+..++....+.+...++.++.++.+...++..+......+ .+..+.|+ .| ++
T Consensus 469 s~~iRl~ss~~---~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~ 544 (1096)
T KOG1897|consen 469 SNSIRLVSSAG---LRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDA 544 (1096)
T ss_pred cccEEEEcchh---hhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCC
Confidence 34566666441 122333 23444555555556677777777878877877665333333 56778887 22 22
Q ss_pred ----CEEEEEc-CC-cEEEEEcCCCceeee--eCCC---CCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCccccccee
Q 021744 202 ----PWIFIGV-TN-FVKAWNTQTNTDLSL--SGPV---GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (308)
Q Consensus 202 ----~~l~~~~-d~-~i~~wd~~~~~~~~~--~~~~---~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 268 (308)
+++++|. +. .+.+.-+.....+.. ..-+ ..|.-..+-.| +|.++..||.+.-|-+..........+.
T Consensus 545 ~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk 624 (1096)
T KOG1897|consen 545 PNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK 624 (1096)
T ss_pred CCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence 2677776 44 334444444433311 1112 23333444454 9999999999987766654332222333
Q ss_pred ccccCCCeEE-EEecCCC-eEEEeeceEEEEeecCcee
Q 021744 269 LKVHTDSNRA-HFSRDVT-SLLGSVSFIMFIGQNNKGV 304 (308)
Q Consensus 269 ~~~~~~~v~~-~~s~d~~-~l~~s~s~~i~~~~~~~~~ 304 (308)
..-...++.. .|+..++ .+++.++.--.+...++.+
T Consensus 625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL 662 (1096)
T KOG1897|consen 625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKL 662 (1096)
T ss_pred cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcE
Confidence 3334567777 8876554 4444443333333334433
No 393
>PHA02790 Kelch-like protein; Provisional
Probab=94.37 E-value=3.9 Score=37.09 Aligned_cols=143 Identities=9% Similarity=0.004 Sum_probs=68.1
Q ss_pred ecCCCe-eeccCC--CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC---CeEEEEEcCCCc-eeeeEe
Q 021744 75 ANNTWG-RNNNFN--NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC---KFLHSWTVGDGF-KLLTQL 146 (308)
Q Consensus 75 s~~g~~-~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d---~~i~iwd~~~~~-~~~~~~ 146 (308)
.-++.. +.|+.+ .++..||..+.+............ .......++.. +.|+.+ ..+..||+.+.. .....+
T Consensus 316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~-~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC-NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc-ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 456667 888864 457778875443221111111111 11222234444 666654 346778887652 111111
Q ss_pred eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC---CCeeEEEEcCCCEEEEEc-C-----CcEEEEEc
Q 021744 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL---GGEVGCMISEGPWIFIGV-T-----NFVKAWNT 217 (308)
Q Consensus 147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~---~~~v~~~~~~~~~l~~~~-d-----~~i~~wd~ 217 (308)
...... .+++ .-++...+.| |.+.+||.++.+-...-.. .........++++.++|+ + ..+..||.
T Consensus 395 ~~~r~~-~~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 395 YYPHYK-SCAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred CCcccc-ceEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEEC
Confidence 111111 1222 2245555555 3577888876643322111 122233356777777665 3 35677777
Q ss_pred CCCcee
Q 021744 218 QTNTDL 223 (308)
Q Consensus 218 ~~~~~~ 223 (308)
.+++-.
T Consensus 470 ~~~~W~ 475 (480)
T PHA02790 470 RTYSWN 475 (480)
T ss_pred CCCeEE
Confidence 766543
No 394
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.27 E-value=3.1 Score=38.64 Aligned_cols=136 Identities=9% Similarity=0.055 Sum_probs=70.4
Q ss_pred cccceEEEEEeCCCCEEEEee------CCC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEcC---------
Q 021744 149 HQKVVSGITLPSGSDKLYSGS------KDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGVT--------- 209 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s------~dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~d--------- 209 (308)
....+...+++|+++.++..- .|. .+.+++.. ++. ..+...... ..+.++++.+....+
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence 334678899999998876554 244 44444542 222 223222212 233466665554322
Q ss_pred ----CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE---EEcCCCCcccccceecc-ccCCCeEE-
Q 021744 210 ----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILA---WKFNVTTNCFEPAASLK-VHTDSNRA- 278 (308)
Q Consensus 210 ----~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i---wd~~~~~~~~~~~~~~~-~~~~~v~~- 278 (308)
+.+.+.++..++... .....|.++.|||| .++.-. ++.|++ -....+.........+. .-...+..
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 234444554443332 33557999999999 444433 477777 33333321011112222 22333455
Q ss_pred EEecCCCeEEE
Q 021744 279 HFSRDVTSLLG 289 (308)
Q Consensus 279 ~~s~d~~~l~~ 289 (308)
.|.+++.+++.
T Consensus 503 ~W~~~~~L~V~ 513 (591)
T PRK13616 503 DWRTGDSLVVG 513 (591)
T ss_pred eEecCCEEEEE
Confidence 89999986654
No 395
>PHA02790 Kelch-like protein; Provisional
Probab=94.22 E-value=4.2 Score=36.89 Aligned_cols=178 Identities=11% Similarity=-0.015 Sum_probs=85.6
Q ss_pred cCCCe-eeccCCC-----cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC--CeEEEEEcCCCc-eeeeE
Q 021744 76 NNTWG-RNNNFNN-----HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC--KFLHSWTVGDGF-KLLTQ 145 (308)
Q Consensus 76 ~~g~~-~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d--~~i~iwd~~~~~-~~~~~ 145 (308)
.++.. +.|+.++ ++..||..+..............-... ...++.. +.|+.+ ..+..||..+.. ..+..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 34445 7777653 466677765432211111111111111 2234444 777753 457788876551 11122
Q ss_pred eeCcccceEEEEEeCCCCEEEEeeCCC---cEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEcCCcEEEEEcCC
Q 021744 146 LEGHQKVVSGITLPSGSDKLYSGSKDE---TVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGVTNFVKAWNTQT 219 (308)
Q Consensus 146 ~~~h~~~v~~~~~~~~~~~l~s~s~dg---~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~d~~i~~wd~~~ 219 (308)
+...... .+++. -++...+.|+.++ .+..||.++.+-...-.... .......++++.+.| |.+.+||.++
T Consensus 349 l~~~r~~-~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCN-PAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESS 424 (480)
T ss_pred CCCCCcc-cEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCC
Confidence 2211111 12222 2566667776553 47788887654332211111 112234566666666 3567899887
Q ss_pred Cceeeee---CCCCCEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCC
Q 021744 220 NTDLSLS---GPVGQVYAMAVGND-LLFAGTQD-----GAILAWKFNVT 259 (308)
Q Consensus 220 ~~~~~~~---~~~~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~ 259 (308)
.+-..+. ...... +++...+ +.+.|+.+ ..|..||..+.
T Consensus 425 ~~W~~~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 425 NTWTLIDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CcEeEcCCCCCCcccc-EEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 7655222 222222 3444455 66666643 34677777664
No 396
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.19 E-value=4.8 Score=37.48 Aligned_cols=142 Identities=12% Similarity=0.045 Sum_probs=77.9
Q ss_pred eeeeeeeecCCce-EEee------CCC--eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC---------
Q 021744 110 TDILCRNWVQGNC-MYGE------KCK--FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD--------- 171 (308)
Q Consensus 110 ~~~~~~~~~~~~~-~~g~------~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d--------- 171 (308)
.+.....+++|.. ++.. .|. .|.+++.... ......+ ...+.-.|+|++..+++.+..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4667788898865 2211 233 4555554322 2222233 247888999998877776533
Q ss_pred ---CcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEE---EEcCCCcee-----eeeC-CCCCEEEEEE
Q 021744 172 ---ETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKA---WNTQTNTDL-----SLSG-PVGQVYAMAV 237 (308)
Q Consensus 172 ---g~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~---wd~~~~~~~-----~~~~-~~~~v~~~~~ 237 (308)
+.+.+.++..++... ..+..+..+ ++||+.++.-.+++|.+ -....++.. .+.. -...+.++.|
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 222222333333222 223445554 68999888655677776 444444411 1222 2334688999
Q ss_pred eCC-EEEEEcCCCeEEEEEcC
Q 021744 238 GND-LLFAGTQDGAILAWKFN 257 (308)
Q Consensus 238 ~~~-~l~~g~~dg~i~iwd~~ 257 (308)
.++ .|+.+..++...+|.+.
T Consensus 505 ~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 505 RTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred ecCCEEEEEecCCCCceEEEe
Confidence 998 55566655555555544
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.15 E-value=2.8 Score=34.65 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=78.6
Q ss_pred eeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC----eeEEEEcCCCEEEEEc-CCcEEEEEcCCC
Q 021744 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG----EVGCMISEGPWIFIGV-TNFVKAWNTQTN 220 (308)
Q Consensus 146 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~----~v~~~~~~~~~l~~~~-d~~i~~wd~~~~ 220 (308)
+.+-+..+.++.|+|+.+.|++......-.++=-..|+.+.++...+ +--....+++++++-. +.++.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44556679999999999999999998988888888899999987322 2222344555555554 777777765544
Q ss_pred ce--------eee--eCC-CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744 221 TD--------LSL--SGP-VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 221 ~~--------~~~--~~~-~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~ 259 (308)
.. +.+ ..+ +...-.++|.|. .|+.+-+-.-+.||.+...
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 21 111 122 456788999998 7777777777888776643
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=0.23 Score=47.62 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=66.9
Q ss_pred eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEE--
Q 021744 81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT-- 157 (308)
Q Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~-- 157 (308)
+.|+..|.+-..|....-...........+|.+++|+.+|.. ..|-.+|.|.+||+..+ +.++.+..|..+.+.+-
T Consensus 103 vi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 103 VIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCccceEEEE
Confidence 777888888887774321101122223345999999999988 66778999999999998 77888877776665544
Q ss_pred -EeCCCCEEEEeeCCCcEEEEeC
Q 021744 158 -LPSGSDKLYSGSKDETVRVWDC 179 (308)
Q Consensus 158 -~~~~~~~l~s~s~dg~v~~wd~ 179 (308)
+..++..++++...|. +|.+
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEEE
Confidence 4456667888877776 5543
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.64 E-value=3 Score=33.31 Aligned_cols=127 Identities=18% Similarity=0.192 Sum_probs=77.2
Q ss_pred eeeeeeecCCceEEeeC----------CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEE-EEeeCCCcEEEEe-
Q 021744 111 DILCRNWVQGNCMYGEK----------CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWD- 178 (308)
Q Consensus 111 ~~~~~~~~~~~~~~g~~----------d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd- 178 (308)
.......|+|++..|.. .|.++.|-+.-. +..+...-.--..++|+.+.+.+ ++-+.+-+|.-||
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 44455677776633321 345555554322 22333333444678898777665 5667778888887
Q ss_pred -CCCCeE-----EEEEeCCCee-------EEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC
Q 021744 179 -CASGQC-----AGVINLGGEV-------GCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND 240 (308)
Q Consensus 179 -~~~~~~-----~~~~~~~~~v-------~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~ 240 (308)
..+|.. +..++...+. .++-.+|.+.++.. .++|...|..+++.+ +++-....++|++|-..
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 555542 2222211111 12333566666665 669999999999988 77777889999999743
No 400
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.58 E-value=0.48 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=24.9
Q ss_pred cceEEEEEeCCC---CEEEEeeCCCcEEEEeCCC
Q 021744 151 KVVSGITLPSGS---DKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 151 ~~v~~~~~~~~~---~~l~s~s~dg~v~~wd~~~ 181 (308)
+.|.++.|+|++ .+|+-.-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999754 4777777788999999995
No 401
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=6.8 Score=36.72 Aligned_cols=192 Identities=10% Similarity=0.009 Sum_probs=99.1
Q ss_pred cCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeee---EeeCcccceEEEEEeC
Q 021744 84 NFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLT---QLEGHQKVVSGITLPS 160 (308)
Q Consensus 84 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~---~~~~h~~~v~~~~~~~ 160 (308)
+.--.|+|+++ +|+.+....-.|. .+..+.|+.+...+.-.++|++++|++-... ... -.......|..+.+..
T Consensus 61 ~a~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 61 SARPYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred ccceeEEEEec-cccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEec
Confidence 33445888887 4555543333332 5677788888778888999999999986542 111 1122334455555555
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeEEEEEe------CCCeeEEEEcCCC--EEEEEcCCc--EEEEEc--CCCceeeeeCC
Q 021744 161 GSDKLYSGSKDETVRVWDCASGQCAGVIN------LGGEVGCMISEGP--WIFIGVTNF--VKAWNT--QTNTDLSLSGP 228 (308)
Q Consensus 161 ~~~~l~s~s~dg~v~~wd~~~~~~~~~~~------~~~~v~~~~~~~~--~l~~~~d~~--i~~wd~--~~~~~~~~~~~ 228 (308)
+|-.+++. +|.+.+-+-.....+++.+ .+.....+..++. .+...-+-. ..++.. ...+...+...
T Consensus 138 ~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 138 NGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred CceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence 55444443 4555544322222222222 1111122222222 111111111 112222 22223333333
Q ss_pred CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc--ccCCCeEEEEecCC
Q 021744 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK--VHTDSNRAHFSRDV 284 (308)
Q Consensus 229 ~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~s~d~ 284 (308)
...+..+.+||+ +|+--...|.|.+-+.... +.+.++. .|..+-..+|.-+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~----~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS----QILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchh----hhhhccCCCCCCchHhceeecCC
Confidence 456788999988 8888889999999888765 4444444 33333322555443
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.42 E-value=2.6 Score=33.68 Aligned_cols=99 Identities=10% Similarity=0.009 Sum_probs=63.0
Q ss_pred eeEEecCCCe--eeccCCCcEEEEE--CCCCCCccccc-c------eeeee-eeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744 71 AKRFANNTWG--RNNNFNNHSNNYR--AGNSKNSNINN-R------AVIKT-DILCRNWVQGNC-MYGEKCKFLHSWTVG 137 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d~~i~vwd--~~~~~~~~~~~-~------~~~~~-~~~~~~~~~~~~-~~g~~d~~i~iwd~~ 137 (308)
.++|..+.+. ++-+.+.+|.-|| ..+++...... . ..... .--++.-..|.+ ++.-..++|...|+.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 5788877776 8888899998888 45554332111 0 01110 111222334444 566677889999999
Q ss_pred CCceeeeEeeCcccceEEEEEeCC-CCE-EEEeeC
Q 021744 138 DGFKLLTQLEGHQKVVSGITLPSG-SDK-LYSGSK 170 (308)
Q Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~-l~s~s~ 170 (308)
++ +.+.+++-.+..|++++|--. -.. .+|+..
T Consensus 242 tG-K~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 242 TG-KILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CC-cEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 99 788888888999999999643 233 344444
No 403
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=2.2 Score=33.47 Aligned_cols=153 Identities=12% Similarity=0.002 Sum_probs=81.8
Q ss_pred cEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEE
Q 021744 88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL 165 (308)
Q Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 165 (308)
.|++||+++++.+...... ...+..-..-.-+.. .-.=.+|.-.++|.++- +.+..+. .++.=+.++ .|+..|
T Consensus 69 ~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~-~~lg~~~-y~GeGWgLt--~d~~~L 143 (262)
T COG3823 69 KIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL-EELGRFS-YEGEGWGLT--SDDKNL 143 (262)
T ss_pred eeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHh-hhhcccc-cCCcceeee--cCCcce
Confidence 5999999888654322221 011111111111111 33446788888998876 4554443 233334444 456567
Q ss_pred EEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEE----EcCCCEEE-EEcCCcEEEEEcCCCcee-------------e
Q 021744 166 YSGSKDETVRVWDCASGQCAGVIN---LGGEVGCM----ISEGPWIF-IGVTNFVKAWNTQTNTDL-------------S 224 (308)
Q Consensus 166 ~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~----~~~~~~l~-~~~d~~i~~wd~~~~~~~-------------~ 224 (308)
+.+....++..-|.++.....++. ...++..+ +.+|...+ +-.+..|...|..+++.. .
T Consensus 144 imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~ 223 (262)
T COG3823 144 IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNL 223 (262)
T ss_pred EeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCc
Confidence 777666788888888765555444 33333332 45555555 223444444555555433 1
Q ss_pred eeCCCCCEEEEEEeCC---EEEEE
Q 021744 225 LSGPVGQVYAMAVGND---LLFAG 245 (308)
Q Consensus 225 ~~~~~~~v~~~~~~~~---~l~~g 245 (308)
-..+.+..+.+++.|+ ++++|
T Consensus 224 ~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 224 DKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccccceeecCcCCeEEEec
Confidence 1234456788898887 56665
No 404
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.10 E-value=7 Score=35.90 Aligned_cols=193 Identities=11% Similarity=0.030 Sum_probs=102.3
Q ss_pred CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCC-CCcccc--ccceeEEecCCCeeeccCCCcEEEEECCCCCCcc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLP-PAATAN--GAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSN 101 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~-~~~~gh--~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~ 101 (308)
+..+..++.++.|+-.|+.++.. +..... .+.. .+.... ....+++. ++..+.++.|+.|.-.|.++++.+-
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~---~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPK---LPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCC---CCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEe
Confidence 45666677788888889888731 111100 0000 000000 00012222 2223677788889888988887653
Q ss_pred cccce-eee--eeeeeeeecCCceEEee------CCCeEEEEEcCCCceeeeEeeCcc----------------------
Q 021744 102 INNRA-VIK--TDILCRNWVQGNCMYGE------KCKFLHSWTVGDGFKLLTQLEGHQ---------------------- 150 (308)
Q Consensus 102 ~~~~~-~~~--~~~~~~~~~~~~~~~g~------~d~~i~iwd~~~~~~~~~~~~~h~---------------------- 150 (308)
..... +.. .+...-...++..+.+. .+|.|.-+|.+++ +.+..+..-.
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG-~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTG-KLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCC-ceeEeccCcCCCcccccccccccccccccCCC
Confidence 32211 110 01111111134444433 2688999999988 4544432110
Q ss_pred ---------cceE-EEEEeCCCCEEEEeeC-----CC-----------cEEEEeCCCCeEEEEEeC-CCe----------
Q 021744 151 ---------KVVS-GITLPSGSDKLYSGSK-----DE-----------TVRVWDCASGQCAGVINL-GGE---------- 193 (308)
Q Consensus 151 ---------~~v~-~~~~~~~~~~l~s~s~-----dg-----------~v~~wd~~~~~~~~~~~~-~~~---------- 193 (308)
..++ .++++++..+++.+.. ++ +|.--|+++|+.+..++. +..
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 1121 3466776666655542 12 677779999999998882 111
Q ss_pred e-EEEEcCCC---EEEEEc-CCcEEEEEcCCCcee
Q 021744 194 V-GCMISEGP---WIFIGV-TNFVKAWNTQTNTDL 223 (308)
Q Consensus 194 v-~~~~~~~~---~l~~~~-d~~i~~wd~~~~~~~ 223 (308)
+ ..+-.+++ .++.+. +|.+.+.|.++++.+
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1 11114565 555555 999999999999874
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.60 E-value=6.9 Score=34.50 Aligned_cols=101 Identities=11% Similarity=0.079 Sum_probs=49.7
Q ss_pred eeccCCCcEEEEECCCCCCcccccceeee-eeeeeeeecCC--ce-EE-eeCCCeEEEEEc-CCCc---eeeeEeeC---
Q 021744 81 RNNNFNNHSNNYRAGNSKNSNINNRAVIK-TDILCRNWVQG--NC-MY-GEKCKFLHSWTV-GDGF---KLLTQLEG--- 148 (308)
Q Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~-g~~d~~i~iwd~-~~~~---~~~~~~~~--- 148 (308)
..+.+..++.+||+.+.+.+.....+... .+..++|..+- .. .+ +.-...|..|-- ..+. +.+.++..
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v 295 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV 295 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence 33457789999999888766544443333 25667776554 22 22 223444544433 3331 11222211
Q ss_pred --------------cccceEEEEEeCCCCEE-EEeeCCCcEEEEeCCC
Q 021744 149 --------------HQKVVSGITLPSGSDKL-YSGSKDETVRVWDCAS 181 (308)
Q Consensus 149 --------------h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd~~~ 181 (308)
-..-|+.+.++.|.++| +++-.+|.|+.||+..
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 13457899999999988 5666799999999986
No 406
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.38 E-value=4.8 Score=33.22 Aligned_cols=66 Identities=12% Similarity=0.261 Sum_probs=41.0
Q ss_pred cceEEEEEeCCCCEEE-EeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEE
Q 021744 151 KVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWN 216 (308)
Q Consensus 151 ~~v~~~~~~~~~~~l~-s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd 216 (308)
.-|-+++.+.+..+++ |.-..+...+||..++..+..-............+-+.+++.+|.+.++.
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceEEecc
Confidence 3466778876555554 44444566789999998776555333322333455666666678777763
No 407
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.91 E-value=13 Score=36.50 Aligned_cols=129 Identities=14% Similarity=0.203 Sum_probs=80.6
Q ss_pred eEEEEEcCCCceeeeEeeCcc----cceEEEEEeCCCC--EEEEee-----------CCCcEEEEeCC-CCeEEEE---E
Q 021744 130 FLHSWTVGDGFKLLTQLEGHQ----KVVSGITLPSGSD--KLYSGS-----------KDETVRVWDCA-SGQCAGV---I 188 (308)
Q Consensus 130 ~i~iwd~~~~~~~~~~~~~h~----~~v~~~~~~~~~~--~l~s~s-----------~dg~v~~wd~~-~~~~~~~---~ 188 (308)
.|++.|..++ +.+..+.... -.+..+.|+.... +++.|. .+|.++.|++- .++.+.. .
T Consensus 854 ~I~~~d~~s~-~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSG-KIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCC-ceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 4888888877 4444433211 2355566654332 233332 23446666543 3442222 2
Q ss_pred eCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCC
Q 021744 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 189 ~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 259 (308)
..+.++.++++-..++++|-...+++||+...++. .++.....|..+.+....++.|...-.|.++..+..
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred CCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecC
Confidence 25567778888877888999999999999888766 333346678888887777777777667777666554
No 408
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.85 E-value=8.6 Score=33.98 Aligned_cols=177 Identities=18% Similarity=0.141 Sum_probs=98.2
Q ss_pred eeeeeeecCCce-EE-----eeCCCeEEEEEcCCCceeee-EeeCcccceEEEEEeCCCCEEEEeeCCC-----------
Q 021744 111 DILCRNWVQGNC-MY-----GEKCKFLHSWTVGDGFKLLT-QLEGHQKVVSGITLPSGSDKLYSGSKDE----------- 172 (308)
Q Consensus 111 ~~~~~~~~~~~~-~~-----g~~d~~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg----------- 172 (308)
+....++|++.. +. |++.-.++++|+.++ +.+. .+.. . ....+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 345677888865 22 344467999999999 4543 3332 1 122399999988776554333
Q ss_pred cEEEEeCCCCeEE--EEEe--CCC--eeE-EEEcCCCEEEEE--c--C-CcEEEEEcCCC-----ceeeeeC-CCCCEEE
Q 021744 173 TVRVWDCASGQCA--GVIN--LGG--EVG-CMISEGPWIFIG--V--T-NFVKAWNTQTN-----TDLSLSG-PVGQVYA 234 (308)
Q Consensus 173 ~v~~wd~~~~~~~--~~~~--~~~--~v~-~~~~~~~~l~~~--~--d-~~i~~wd~~~~-----~~~~~~~-~~~~v~~ 234 (308)
.|+.|.+.+.... ..+. .+. .+. ..+.++++++.. . + ..+.+.|+... +...+.. ..+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888876432 3444 222 122 235788988753 2 3 46888898875 3333333 3344455
Q ss_pred EEEeCC--EEEEE--cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 235 MAVGND--LLFAG--TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 235 ~~~~~~--~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
+....+ ++.+- ...+.|...++...... .....+..+...+.. .+...+.+|+...
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPA-EWWTVLIPEDEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGG-GEEEEEE--SSSEEEEEEEEETTEEEEEE
T ss_pred EEccCCEEEEeeCCCCCCcEEEEecccccccc-cceeEEcCCCCceeEEEEEEECCEEEEEE
Confidence 666666 33332 22456777777775320 112245566665555 7777777777554
No 409
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.68 E-value=0.8 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=24.4
Q ss_pred CCEEEEEEeCC-----EEEEEcCCCeEEEEEcCC
Q 021744 230 GQVYAMAVGND-----LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 230 ~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~ 258 (308)
+.+.++.|+|+ +|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36889999974 777777889999999995
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.50 E-value=4.5 Score=38.81 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=63.6
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeE-------E--E--E----------------cCCCEEEEE-cCCcEE
Q 021744 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG-------C--M--I----------------SEGPWIFIG-VTNFVK 213 (308)
Q Consensus 162 ~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~-------~--~--~----------------~~~~~l~~~-~d~~i~ 213 (308)
+..++.++.++.|.-.|.++|+.+..+..+.... | + . ..+..++.+ .|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4578888889999999999999998887332211 1 1 1 123355555 499999
Q ss_pred EEEcCCCceeeeeCCCCCE-----------------EEEEEeCCEEEEEcC----------CCeEEEEEcCCCCc
Q 021744 214 AWNTQTNTDLSLSGPVGQV-----------------YAMAVGNDLLFAGTQ----------DGAILAWKFNVTTN 261 (308)
Q Consensus 214 ~wd~~~~~~~~~~~~~~~v-----------------~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~ 261 (308)
-.|.++++...-.+..+.+ ..-.+..+.++.|+. +|.|+-+|.++++.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 9999999877321222111 111222345555642 68899999999854
No 411
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.40 E-value=2.1 Score=34.17 Aligned_cols=68 Identities=12% Similarity=0.365 Sum_probs=33.1
Q ss_pred CCeeEEEEcCCCEEE-EEcCCcEEEEEcCCCcee--e------ee-------CCCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744 191 GGEVGCMISEGPWIF-IGVTNFVKAWNTQTNTDL--S------LS-------GPVGQVYAMAVGND--LLFAGTQDGAIL 252 (308)
Q Consensus 191 ~~~v~~~~~~~~~l~-~~~d~~i~~wd~~~~~~~--~------~~-------~~~~~v~~~~~~~~--~l~~g~~dg~i~ 252 (308)
+.++..+...+.+++ ...+|.+++||+.+++.. . +. .....|..+.++.+ -+++ -.+|..+
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y 90 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSY 90 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEE
Confidence 333344444444443 334666666666555432 0 11 23445666666655 2232 2346667
Q ss_pred EEEcCCC
Q 021744 253 AWKFNVT 259 (308)
Q Consensus 253 iwd~~~~ 259 (308)
.|+..-+
T Consensus 91 ~y~~~L~ 97 (219)
T PF07569_consen 91 SYSPDLG 97 (219)
T ss_pred Eeccccc
Confidence 7765543
No 412
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.38 E-value=0.26 Score=46.46 Aligned_cols=142 Identities=17% Similarity=0.238 Sum_probs=81.1
Q ss_pred eeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEE-----------EeCCCCEEEEeeCCCcEEEEeCC-
Q 021744 114 CRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT-----------LPSGSDKLYSGSKDETVRVWDCA- 180 (308)
Q Consensus 114 ~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~l~s~s~dg~v~~wd~~- 180 (308)
|-|-+.... -.+..++.|++....+.. ...+.+|...+..++ ++|||..++.+..||.+++|.+.
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 334444433 457788899987776542 234556776665554 58899999999999999888654
Q ss_pred CC----eEEEEEe-CC-CeeEEE-EcC--------CC--EEEEEc--CCcEEEEEcCCCcee-e--------eeCCCCCE
Q 021744 181 SG----QCAGVIN-LG-GEVGCM-ISE--------GP--WIFIGV--TNFVKAWNTQTNTDL-S--------LSGPVGQV 232 (308)
Q Consensus 181 ~~----~~~~~~~-~~-~~v~~~-~~~--------~~--~l~~~~--d~~i~~wd~~~~~~~-~--------~~~~~~~v 232 (308)
++ .++..++ |. .+..|. +.+ +. +++.+. +..+++|.....++. . ...|...|
T Consensus 267 ~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v 346 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEV 346 (1283)
T ss_pred eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccc
Confidence 22 3444444 33 333343 322 22 334444 558999987766554 1 11233333
Q ss_pred EEEEEeCC---EEEEEcCCCeEEEEEcC
Q 021744 233 YAMAVGND---LLFAGTQDGAILAWKFN 257 (308)
Q Consensus 233 ~~~~~~~~---~l~~g~~dg~i~iwd~~ 257 (308)
+.+....- .++..+-++.|.+|.-+
T Consensus 347 ~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 347 TDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 33222211 45556677888888644
No 413
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.36 E-value=11 Score=34.07 Aligned_cols=26 Identities=8% Similarity=-0.097 Sum_probs=19.3
Q ss_pred ceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744 152 VVSGITLPSGSDKLYSGSKDETVRVW 177 (308)
Q Consensus 152 ~v~~~~~~~~~~~l~s~s~dg~v~~w 177 (308)
.|..+..++.|..++-.+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 45667778888888888888865544
No 414
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.32 E-value=6.3 Score=35.93 Aligned_cols=142 Identities=12% Similarity=0.129 Sum_probs=77.5
Q ss_pred cceEEEEEeCCCCEE-EEee--CCCcEEEEeCCCCeEEEEEeCCCeeEEE-E-c----C-CCEEEEEcCCcEEEEEcCCC
Q 021744 151 KVVSGITLPSGSDKL-YSGS--KDETVRVWDCASGQCAGVINLGGEVGCM-I-S----E-GPWIFIGVTNFVKAWNTQTN 220 (308)
Q Consensus 151 ~~v~~~~~~~~~~~l-~s~s--~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~-~----~-~~~l~~~~d~~i~~wd~~~~ 220 (308)
.++..++|. ||+.+ ++.- .+|.+++=| ...+..|. .+..+ | | + ..+||+-..+.|.+|.+...
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 467888887 56554 3332 234443333 22333333 23322 2 1 2 35777788899999987522
Q ss_pred -----cee-eeeCC---CCC--EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCe
Q 021744 221 -----TDL-SLSGP---VGQ--VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS 286 (308)
Q Consensus 221 -----~~~-~~~~~---~~~--v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~ 286 (308)
+.. ....+ .-+ ...+.|+|. .|+.-+....=.+++++.... +....+ ...+.|.| +|.+||+.
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEec-cCCceEEEEEecCcCCE
Confidence 211 11111 111 245779998 554444433434566654421 222334 45678888 99999999
Q ss_pred EEEee--ceEEEEeecCc
Q 021744 287 LLGSV--SFIMFIGQNNK 302 (308)
Q Consensus 287 l~~s~--s~~i~~~~~~~ 302 (308)
|+++. +..-|+|...+
T Consensus 170 LVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEeCCeEEEEEecCch
Confidence 88544 77788887544
No 415
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.31 E-value=5.7 Score=39.61 Aligned_cols=147 Identities=14% Similarity=0.228 Sum_probs=90.8
Q ss_pred eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEE-eCC-------CCEEEEeeCCCcEEEEeCC--
Q 021744 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSG-------SDKLYSGSKDETVRVWDCA-- 180 (308)
Q Consensus 111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~-~~~-------~~~l~s~s~dg~v~~wd~~-- 180 (308)
-..+.++|.=..+--+-|+.+.+|+.+++ .....+.+-...|..+.. -|. =++++..+.--.|.++-+.
T Consensus 81 ~~~mGiFpeI~RaWiTiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 81 KTDMGIFPEIGRAWITIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeeccchhhcceEEEeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 44555666655566678999999999986 456666666666766653 232 2344333333445555332
Q ss_pred --CCeE---E--EEEe-CCCeeEEEE--cCCCEEEEEcCCcEE--EEEcCCC---------------------ceeeee-
Q 021744 181 --SGQC---A--GVIN-LGGEVGCMI--SEGPWIFIGVTNFVK--AWNTQTN---------------------TDLSLS- 226 (308)
Q Consensus 181 --~~~~---~--~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~--~wd~~~~---------------------~~~~~~- 226 (308)
++.. . .++. .+..+.|+. .+|+.+++|.||.|+ +|....+ ....+.
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 1111 1 1222 355666764 578888899888554 2322221 011233
Q ss_pred CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744 227 GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 227 ~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~ 258 (308)
.+.++|..+.+... ++.+-++.|+|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 45679999999877 888899999999999986
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.06 E-value=2 Score=34.36 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=40.3
Q ss_pred EeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe------C---------CCeeEEE--EcCCCEEEEEcCCcEEEEEcCCC
Q 021744 158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVIN------L---------GGEVGCM--ISEGPWIFIGVTNFVKAWNTQTN 220 (308)
Q Consensus 158 ~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~------~---------~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~ 220 (308)
+..++.+|+..+.+|.+++||+.+++.+..-. . ...+..+ ..+|.-+++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 34567899999999999999999987654331 1 1122222 34555555555666677765544
Q ss_pred c
Q 021744 221 T 221 (308)
Q Consensus 221 ~ 221 (308)
.
T Consensus 98 ~ 98 (219)
T PF07569_consen 98 C 98 (219)
T ss_pred e
Confidence 3
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.78 E-value=8.7 Score=36.96 Aligned_cols=104 Identities=12% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCceEEeeCCCeEEEEEcCCCceeeeEeeCcccc--------eEEEEEeC----------------CCCEEEEeeCCCcE
Q 021744 119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV--------VSGITLPS----------------GSDKLYSGSKDETV 174 (308)
Q Consensus 119 ~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~--------v~~~~~~~----------------~~~~l~s~s~dg~v 174 (308)
++....++.++.|.-.|..++ +.+..+.-.... ...+++.. .+..++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TG-k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATG-KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCC-cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 445566677888888999888 566555422110 12233321 23478889999999
Q ss_pred EEEeCCCCeEEEEEeCCCeeE--------------E----EEcCCCEEEEEc----------CCcEEEEEcCCCcee
Q 021744 175 RVWDCASGQCAGVINLGGEVG--------------C----MISEGPWIFIGV----------TNFVKAWNTQTNTDL 223 (308)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~v~--------------~----~~~~~~~l~~~~----------d~~i~~wd~~~~~~~ 223 (308)
.-.|.++|+.+..+..++.+. . +..++..++.+. +|.|+-+|.++++..
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999998776433321 0 112343343221 478999999999887
No 418
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.63 E-value=11 Score=32.85 Aligned_cols=270 Identities=11% Similarity=0.043 Sum_probs=132.6
Q ss_pred CCCCceEEecCCCeEEEeecCCCC-CCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCccc
Q 021744 24 GGGGLSTADTRQKVCNYWRAGKCN-RFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNI 102 (308)
Q Consensus 24 ~~~~~~~s~s~d~~i~~W~~~~~~-~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~ 102 (308)
..+..+..++.|+.|.-.|..++. ++..+... .. ..-..-.+..+|..+.++.++.+...|..+++..-.
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~------~~---~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~ 136 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG------AV---AQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWS 136 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEEecccCcC------cc---eeccCceEEeCCeEEEecccceEEEEECCCCcEEEE
Confidence 345566666788888888888773 12111111 00 000011222277778888888888888766654422
Q ss_pred ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcc---cceEEEEEeCCCCEEEEeeC--CCcEEEE
Q 021744 103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ---KVVSGITLPSGSDKLYSGSK--DETVRVW 177 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~s~--dg~v~~w 177 (308)
......-.........++....++.++.+...+..++ +.......-. ..+..--. .....++.+.. ++.+.-.
T Consensus 137 ~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG-~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~ 214 (370)
T COG1520 137 RNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTG-TLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYAL 214 (370)
T ss_pred EecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCC-cEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEE
Confidence 2111100111222233334444447788888888888 4544433211 11111001 12334555555 6677778
Q ss_pred eCCCCeEEEEEeCCCee-------E-E-----EEcCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCCE-E
Q 021744 178 DCASGQCAGVINLGGEV-------G-C-----MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDL-L 242 (308)
Q Consensus 178 d~~~~~~~~~~~~~~~v-------~-~-----~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~~-l 242 (308)
|.++|+.+...+....+ . . +..++.....+.++.+...|..+++.+ ..... ..+.-++-+ .
T Consensus 215 ~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~----~~~~~~~~~~~ 290 (370)
T COG1520 215 NAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG----GSVQGSGLYTT 290 (370)
T ss_pred EccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc----cEeccCCeeEE
Confidence 88888888775411111 1 1 122344434445778999999999988 44332 111111111 1
Q ss_pred EEEcCCCeEEEEEcCCCCcccccceeccccCCCe-EE-EEecCCCeEE---EeeceEEEEeecCce-eEEeC
Q 021744 243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSN-RA-HFSRDVTSLL---GSVSFIMFIGQNNKG-VVCYR 308 (308)
Q Consensus 243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v-~~-~~s~d~~~l~---~s~s~~i~~~~~~~~-~~~~~ 308 (308)
-....||.+.++...........+..+..-.... .. .+.+++.+.+ +..+..+|....+.. +++||
T Consensus 291 ~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g~~~~~~~~~~~g~~y~~~~~~~~ly~~~ 362 (370)
T COG1520 291 PVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAGSDGTLYFGGDDGRGLYAFR 362 (370)
T ss_pred eecCCCccEEEEEeccccccccceEEEeccCCCeeEEEEEeCCCceecccceeccCeEEecccCCceEEEEc
Confidence 1122578888876544310001112222212222 24 6666763332 222566666666654 77775
No 419
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.20 E-value=3.6 Score=36.24 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=36.8
Q ss_pred eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (308)
Q Consensus 147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~ 189 (308)
......+.+++.+|.+++.+....-|.|.++|+.++..++.++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 3445678899999999988888888999999999998888877
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=8.9 Score=37.83 Aligned_cols=134 Identities=7% Similarity=-0.046 Sum_probs=78.6
Q ss_pred eeEEecCCCe---eeccCCCcEEEEECCCCC--------Ccccccceeeee--eeeeeeecCC--ceEEeeCCCeEEEEE
Q 021744 71 AKRFANNTWG---RNNNFNNHSNNYRAGNSK--------NSNINNRAVIKT--DILCRNWVQG--NCMYGEKCKFLHSWT 135 (308)
Q Consensus 71 ~i~~s~~g~~---~s~~~d~~i~vwd~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~--~~~~g~~d~~i~iwd 135 (308)
.+...+|+.. +..+.+-.|..+|+..-. ++........+. ..++.+.|.- ..+....|+.|++..
T Consensus 105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~ 184 (1405)
T KOG3630|consen 105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKS 184 (1405)
T ss_pred EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhh
Confidence 4566777766 333344468899995321 111111122222 3444555543 236677888888887
Q ss_pred cCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-----CCCeeEEE-E-cCCCEEEE
Q 021744 136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-----LGGEVGCM-I-SEGPWIFI 206 (308)
Q Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-----~~~~v~~~-~-~~~~~l~~ 206 (308)
+....+....+. -....++++|+|.|..++.|-..|++.-|... .+....+. ....+.++ | ....++++
T Consensus 185 ~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 185 TKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 764433333333 45678999999999999999999999988754 33333333 12445555 3 34445443
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.17 E-value=7.4 Score=37.10 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=28.3
Q ss_pred cccceEEEEEeCC---CCEEEEeeCCCcEEEEeCCC
Q 021744 149 HQKVVSGITLPSG---SDKLYSGSKDETVRVWDCAS 181 (308)
Q Consensus 149 h~~~v~~~~~~~~---~~~l~s~s~dg~v~~wd~~~ 181 (308)
+...|..+.|+|. +.+|+.-..|+++++||+..
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 4568889999986 47899999999999999975
No 422
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.95 E-value=10 Score=31.51 Aligned_cols=110 Identities=8% Similarity=0.036 Sum_probs=65.3
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCcee------
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKL------ 142 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~------ 142 (308)
++.|+|+.+. ++......--||=...|+.+.......-+....+.+.-.+.+ ++--.+..+.++.+......
T Consensus 90 ~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~ 169 (316)
T COG3204 90 SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQ 169 (316)
T ss_pred ceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccce
Confidence 7999999998 665555555555445666554322222233445566666666 44456778887766543111
Q ss_pred eeEe---eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744 143 LTQL---EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (308)
Q Consensus 143 ~~~~---~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~ 180 (308)
.-.+ .......-.++|+|....|..+=+-.-+.|+...
T Consensus 170 ~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 170 KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 1111 1124567789999988777777666666666544
No 423
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.83 E-value=9.7 Score=31.09 Aligned_cols=148 Identities=9% Similarity=0.047 Sum_probs=82.7
Q ss_pred eeeeeeeeecCCc-e-EEeeCCCeEEEEEcCCCceeeeEeeCc-ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC---
Q 021744 109 KTDILCRNWVQGN-C-MYGEKCKFLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--- 182 (308)
Q Consensus 109 ~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~--- 182 (308)
..+..+.+.|+.. . +...+.+.|..++.. + +.++.+.-. .+..-.+++..++.++++--.++.+.++++...
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G-~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G-KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-C-CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 3477889998754 4 667788888888864 5 556655432 356788999888877777667899999988431
Q ss_pred ---eEEEEEe--C----CCeeE--EEEcCCCEEEEEc-CCcEEEEEcCC--C--cee--e------eeCCCCCEEEEEEe
Q 021744 183 ---QCAGVIN--L----GGEVG--CMISEGPWIFIGV-TNFVKAWNTQT--N--TDL--S------LSGPVGQVYAMAVG 238 (308)
Q Consensus 183 ---~~~~~~~--~----~~~v~--~~~~~~~~l~~~~-d~~i~~wd~~~--~--~~~--~------~~~~~~~v~~~~~~ 238 (308)
.....+. . ..-.- +.-+.++.|++.. ..-..+|.++. . ... . .......+.+++++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 1122333 1 11122 3345555555554 44444554433 1 111 1 11233467899999
Q ss_pred CC---EEEEEcCCCeEEEEEcCC
Q 021744 239 ND---LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 239 ~~---~l~~g~~dg~i~iwd~~~ 258 (308)
|. +++.+.....|..+|...
T Consensus 180 p~t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE-TT-
T ss_pred CCCCeEEEEECCCCeEEEECCCC
Confidence 98 777788899999999443
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.82 E-value=16 Score=34.89 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=24.7
Q ss_pred CCCCEEEEEEeCC-----EEEEEcCCCeEEEEEcCCC
Q 021744 228 PVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 228 ~~~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~~ 259 (308)
+...|..+.|+|. .|+.=+.|+++++||+...
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 3457888888875 6777788899999998754
No 425
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.76 E-value=8.5 Score=30.31 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEE-EEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEE
Q 021744 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI 206 (308)
Q Consensus 128 d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 206 (308)
...|++||+.++ +.+.+-.--...+..=-...-+..+ .-.-.+|.-..+|.++-+++..+..+++-..+..+++.|+.
T Consensus 67 ~S~ir~~~L~~g-q~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~Lim 145 (262)
T COG3823 67 FSKIRVSDLTTG-QEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNLIM 145 (262)
T ss_pred cceeEEEeccCc-eEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeeecCCcceEe
Confidence 357999999988 4443322111222211111112232 22345788899999999999999988888889888887776
Q ss_pred Ec-CCcEEEEEcCCCcee-----eeeC-----------CCCCEEEEEEeCC-EEEEEcCCCeEEEE-EcCCCCcccccce
Q 021744 207 GV-TNFVKAWNTQTNTDL-----SLSG-----------PVGQVYAMAVGND-LLFAGTQDGAILAW-KFNVTTNCFEPAA 267 (308)
Q Consensus 207 ~~-d~~i~~wd~~~~~~~-----~~~~-----------~~~~v~~~~~~~~-~l~~g~~dg~i~iw-d~~~~~~~~~~~~ 267 (308)
+. ..++++-|.++.... +..+ -.+.+.+=.|..+ ++-.--+.|+|.-| |+..-. ..+.
T Consensus 146 sdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~---~~~~ 222 (262)
T COG3823 146 SDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLL---KELN 222 (262)
T ss_pred eCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCc---hhcC
Confidence 65 667887777665332 1111 2234444445444 33344445555444 444321 2222
Q ss_pred eccccCCCeEE-EEecCCCeEEEe
Q 021744 268 SLKVHTDSNRA-HFSRDVTSLLGS 290 (308)
Q Consensus 268 ~~~~~~~~v~~-~~s~d~~~l~~s 290 (308)
.-..+.+..+. ++.|++..++..
T Consensus 223 ~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 223 LDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred ccccccccccceeecCcCCeEEEe
Confidence 22345566777 999988555533
No 426
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.68 E-value=15 Score=31.88 Aligned_cols=142 Identities=20% Similarity=0.255 Sum_probs=82.0
Q ss_pred ecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc--ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCe-
Q 021744 117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH--QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE- 193 (308)
Q Consensus 117 ~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~- 193 (308)
..++....+..+|.|.-.|..++ ..+.....- ...+..-.+..+|+ ++.++.++.+...|.++|+.+........
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 34555566678888888888888 433322211 12222222333554 88888899999999999999999885551
Q ss_pred --eEEEEcCCCEEEEE-cCCcEEEEEcCCCcee-eeeCC---CCCEEE-EEEeCCEEEEEcC--CCeEEEEEcCCCC
Q 021744 194 --VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGP---VGQVYA-MAVGNDLLFAGTQ--DGAILAWKFNVTT 260 (308)
Q Consensus 194 --v~~~~~~~~~l~~~-~d~~i~~wd~~~~~~~-~~~~~---~~~v~~-~~~~~~~l~~g~~--dg~i~iwd~~~~~ 260 (308)
..........+..+ .++.+...|..+++.. ..... ...+.. .....+.+..+.. ++.+.-.|..++.
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 11112233344444 5788888888888876 22211 111111 1122225555555 6667777777664
No 427
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.34 E-value=5.1 Score=37.02 Aligned_cols=38 Identities=32% Similarity=0.697 Sum_probs=29.5
Q ss_pred ceEEEEEeC----CCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744 152 VVSGITLPS----GSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (308)
Q Consensus 152 ~v~~~~~~~----~~~~l~s~s~dg~v~~wd~~~~~~~~~~~ 189 (308)
.+..+++++ +..++++.+.|+++|+||+.+++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 445566666 67889999999999999999999977664
No 428
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.73 E-value=2.9 Score=22.92 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=6.4
Q ss_pred CCcEEEEEcCCCce
Q 021744 209 TNFVKAWNTQTNTD 222 (308)
Q Consensus 209 d~~i~~wd~~~~~~ 222 (308)
+++|.++|..+++.
T Consensus 13 ~~~v~~id~~~~~~ 26 (42)
T TIGR02276 13 SNTVSVIDTATNKV 26 (42)
T ss_pred CCEEEEEECCCCeE
Confidence 34455555444443
No 429
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.64 E-value=19 Score=31.83 Aligned_cols=74 Identities=9% Similarity=-0.012 Sum_probs=48.0
Q ss_pred CCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE---EEecC----------------CCeEE
Q 021744 230 GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA---HFSRD----------------VTSLL 288 (308)
Q Consensus 230 ~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~---~~s~d----------------~~~l~ 288 (308)
..+.+++.+|+ +.|+...-|+|.++|+..+ ..++.+++..+.-.. ...+. ..+|+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG----IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 46788999999 6666667799999999987 666666654432211 11111 12333
Q ss_pred Eee----ceEEEEeecCceeEEe
Q 021744 289 GSV----SFIMFIGQNNKGVVCY 307 (308)
Q Consensus 289 ~s~----s~~i~~~~~~~~~~~~ 307 (308)
.-. -+.||-+++..++..|
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEE
Confidence 322 6778888888888765
No 430
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.49 E-value=12 Score=33.72 Aligned_cols=140 Identities=9% Similarity=0.043 Sum_probs=78.7
Q ss_pred ecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--------ceEEeeCCCeEEEEEcCCCceeee
Q 021744 75 ANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--------NCMYGEKCKFLHSWTVGDGFKLLT 144 (308)
Q Consensus 75 s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~d~~i~iwd~~~~~~~~~ 144 (308)
..+.++ ..|..-..+.--|++.|+.+... ..+. .+ .+.|.|.. ..+.|-.+..|.-.|++-....+.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW-~~~d-dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEW-DLKD-DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEe-ecCC-cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 344444 55666666666677666554211 1111 12 45555544 236677777777778764322222
Q ss_pred EeeCcccceEEEEEe----CCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEE--EEcCCCEEEEEcCCcEEEEEc
Q 021744 145 QLEGHQKVVSGITLP----SGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGC--MISEGPWIFIGVTNFVKAWNT 217 (308)
Q Consensus 145 ~~~~h~~~v~~~~~~----~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~--~~~~~~~l~~~~d~~i~~wd~ 217 (308)
.-+ .++-++.-.|+ ....+++.+|..|-|++||--.......+. .+..+.. +..+|+++++.+...+.+-|+
T Consensus 553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~ 631 (776)
T COG5167 553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDV 631 (776)
T ss_pred eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEec
Confidence 111 12222222222 234689999999999999944322222233 3333433 468899999888888888887
Q ss_pred C
Q 021744 218 Q 218 (308)
Q Consensus 218 ~ 218 (308)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 5
No 431
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.75 E-value=17 Score=30.28 Aligned_cols=96 Identities=14% Similarity=0.306 Sum_probs=58.0
Q ss_pred CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee------CCCcEEEEeCCCCeEEEEEe-----CCCeeE
Q 021744 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS------KDETVRVWDCASGQCAGVIN-----LGGEVG 195 (308)
Q Consensus 127 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~dg~v~~wd~~~~~~~~~~~-----~~~~v~ 195 (308)
....|.+||..+. +-...-.+-.+.|+++.|..+.++++.|. ....+..||+.+..-...-. .++++.
T Consensus 14 ~C~~lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNS-QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCC-EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 4567999998876 33333334568899999986666677664 45678899988764321111 235666
Q ss_pred EEE---cCCC-EEEEEc----CCcEEEEEcCCCcee
Q 021744 196 CMI---SEGP-WIFIGV----TNFVKAWNTQTNTDL 223 (308)
Q Consensus 196 ~~~---~~~~-~l~~~~----d~~i~~wd~~~~~~~ 223 (308)
.+. .+.. +.++|. +..|..||-.+...+
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 653 2443 444443 336777875544433
No 432
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.36 E-value=17 Score=29.79 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=74.9
Q ss_pred ceEEEEEeCCCCEEEEee-CCCcEEEEeCCCCeEEEEEeCCCeeE--EEEcCCCEEEEEc-CCcEEEE-EcCCCcee--e
Q 021744 152 VVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGV-TNFVKAW-NTQTNTDL--S 224 (308)
Q Consensus 152 ~v~~~~~~~~~~~l~s~s-~dg~v~~wd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~~w-d~~~~~~~--~ 224 (308)
.+.+.+++++++.++... .++.-.+|-...+...........+. ++.+++...++.. +....++ +...++.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 688999999998776655 23333344333333333322222222 2345566655544 4455555 33333322 2
Q ss_pred eeCC--CCCEEEEEEeCC--EE---EEEcCCCeEEEEEcCCCCcc-----cccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 225 LSGP--VGQVYAMAVGND--LL---FAGTQDGAILAWKFNVTTNC-----FEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 225 ~~~~--~~~v~~~~~~~~--~l---~~g~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
.... ...|.++.+||| .+ +....++.|.+--+...... ..++.........+.. .|.+++.+++...
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 2222 228999999999 33 33345678887765432211 1111222233456777 9999998887544
No 433
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.23 E-value=11 Score=27.40 Aligned_cols=99 Identities=9% Similarity=0.128 Sum_probs=62.8
Q ss_pred EEeeCCCeEEEEEcCCCc-------eeeeEeeCcccceEEEEEeC---C--CCEEEEeeCCCcEEEEeCCCCeEEEEEeC
Q 021744 123 MYGEKCKFLHSWTVGDGF-------KLLTQLEGHQKVVSGITLPS---G--SDKLYSGSKDETVRVWDCASGQCAGVINL 190 (308)
Q Consensus 123 ~~g~~d~~i~iwd~~~~~-------~~~~~~~~h~~~v~~~~~~~---~--~~~l~s~s~dg~v~~wd~~~~~~~~~~~~ 190 (308)
+.+..-+.|.|+++.... ..++.|. -...|++++--+ + ...|+.|+. ..+..||+....-+..-..
T Consensus 14 ~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke~ 91 (136)
T PF14781_consen 14 ACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKEV 91 (136)
T ss_pred EEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhhC
Confidence 556677889998876331 2233333 346777776432 2 345666554 6799999997765544444
Q ss_pred CCeeEEEE------cCCCEEEEEcCCcEEEEEcCCCcee
Q 021744 191 GGEVGCMI------SEGPWIFIGVTNFVKAWNTQTNTDL 223 (308)
Q Consensus 191 ~~~v~~~~------~~~~~l~~~~d~~i~~wd~~~~~~~ 223 (308)
+.-+.++. .+..++++|.+..|.-||....+..
T Consensus 92 ~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 92 PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 44455442 2567788888999999887766655
No 434
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.09 E-value=6.2 Score=30.15 Aligned_cols=32 Identities=6% Similarity=0.019 Sum_probs=25.7
Q ss_pred cceEEEEEeCCC------CEEEEeeCCCcEEEEeCCCC
Q 021744 151 KVVSGITLPSGS------DKLYSGSKDETVRVWDCASG 182 (308)
Q Consensus 151 ~~v~~~~~~~~~------~~l~s~s~dg~v~~wd~~~~ 182 (308)
..|..++|+|.| -+|+..+.++.|.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 488999999954 35888899999999986643
No 435
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.26 E-value=27 Score=31.08 Aligned_cols=28 Identities=32% Similarity=0.627 Sum_probs=22.8
Q ss_pred CEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744 231 QVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 231 ~v~~~~~~~~--~l~~g~~dg~i~iwd~~~ 258 (308)
.|.++...+. .+++-+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4888999887 899999999999999975
No 436
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.04 E-value=18 Score=32.09 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=83.6
Q ss_pred eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeC-ccc----ceE-EEEEeCCCCEEEEeeCCCcEEEE-eCCCC-
Q 021744 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG-HQK----VVS-GITLPSGSDKLYSGSKDETVRVW-DCASG- 182 (308)
Q Consensus 111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~-h~~----~v~-~~~~~~~~~~l~s~s~dg~v~~w-d~~~~- 182 (308)
+..+-..|+|..++--....+.++++.+..-..+++-. ..+ .|+ .+..-..+.-++.++.||-|.-| |.+.+
T Consensus 223 v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~ 302 (733)
T COG4590 223 VSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDG 302 (733)
T ss_pred hHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCC
Confidence 55566778887644444477888887654211222211 111 111 11222345668888999999888 54432
Q ss_pred e----EEEEEe-CCCeeEEEEcCCC--EEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744 183 Q----CAGVIN-LGGEVGCMISEGP--WIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAIL 252 (308)
Q Consensus 183 ~----~~~~~~-~~~~v~~~~~~~~--~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~ 252 (308)
+ .++.++ .+.++..+.++.+ -+++-+ .|++.++.....+..-+..--..+.-+++||. ++++ -+.|.++
T Consensus 303 ~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~-e~~gki~ 381 (733)
T COG4590 303 QPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS-EDQGKIR 381 (733)
T ss_pred CCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee-ecCCceE
Confidence 2 223333 3355555655532 233333 78888776655554422222235566889998 5554 4568999
Q ss_pred EEEcCCCC
Q 021744 253 AWKFNVTT 260 (308)
Q Consensus 253 iwd~~~~~ 260 (308)
++.+++..
T Consensus 382 ~~~l~Nr~ 389 (733)
T COG4590 382 LAQLENRN 389 (733)
T ss_pred EEEecCCC
Confidence 99998864
No 437
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=84.93 E-value=42 Score=33.15 Aligned_cols=128 Identities=12% Similarity=0.149 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCceeeeEeeC--cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEEEcCCC
Q 021744 128 CKFLHSWTVGDGFKLLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMISEGP 202 (308)
Q Consensus 128 d~~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~~~~~~ 202 (308)
+|.++.|+.-...+.+.-+.. -..+|. +..|-..++++| ....+++||+...++++... .+..+..+...+.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~ 987 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA 987 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecce
Confidence 566777776433232322211 123333 445544444443 45689999999888776655 2455666667788
Q ss_pred EEEEEc--CC-cEEEEEcCCCceeeeeCC--CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744 203 WIFIGV--TN-FVKAWNTQTNTDLSLSGP--VGQVYAMAVGND-LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 203 ~l~~~~--d~-~i~~wd~~~~~~~~~~~~--~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~ 258 (308)
.+++|. ++ ....|+-...+.+.+... ...|+++.+-.. .+|.+..-|.+.+..+..
T Consensus 988 RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCC
Confidence 888887 33 345677666666655432 346777776655 899888888888887654
No 438
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.92 E-value=22 Score=29.96 Aligned_cols=104 Identities=12% Similarity=0.122 Sum_probs=55.2
Q ss_pred EcCCCEEEEEcCCcE-EEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccc-cceeccccC
Q 021744 198 ISEGPWIFIGVTNFV-KAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFE-PAASLKVHT 273 (308)
Q Consensus 198 ~~~~~~l~~~~d~~i-~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~ 273 (308)
.+++++++++..|.+ .-||--...-. .-......|.+|.|.|+ .|......|.|++=+.......+. .+..+....
T Consensus 153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCc
Confidence 478999999997755 46775433222 22234578999999999 444455888998887322211011 111222223
Q ss_pred CCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744 274 DSNRA-HFSRDVTSLLGSVSFIMFIGQNN 301 (308)
Q Consensus 274 ~~v~~-~~s~d~~~l~~s~s~~i~~~~~~ 301 (308)
..+.. +|.+++...+++++..|+....+
T Consensus 233 ~~~ld~a~~~~~~~wa~gg~G~l~~S~Dg 261 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAVGGSGTLLVSTDG 261 (302)
T ss_dssp S-EEEEEESSSS-EEEEESTT-EEEESST
T ss_pred eeeEEEEecCCCCEEEEeCCccEEEeCCC
Confidence 33555 99999888888777777765543
No 439
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=84.76 E-value=3.4 Score=20.65 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=19.2
Q ss_pred CEEEEEEeCCEEEEEcCCCeEEEE
Q 021744 231 QVYAMAVGNDLLFAGTQDGAILAW 254 (308)
Q Consensus 231 ~v~~~~~~~~~l~~g~~dg~i~iw 254 (308)
.|.+++..+.+++.++..+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 577888887788888888888887
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.32 E-value=0.28 Score=43.08 Aligned_cols=140 Identities=13% Similarity=0.118 Sum_probs=90.5
Q ss_pred eeecCC-ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE-EEEeeCCCcEEEEeCCCCeEEEEEe---
Q 021744 115 RNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYSGSKDETVRVWDCASGQCAGVIN--- 189 (308)
Q Consensus 115 ~~~~~~-~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~v~~wd~~~~~~~~~~~--- 189 (308)
.+-+.+ +.+.++.+..+..||-... ..-.+. .++....++|+.++.. ++.+-..+.+.+||+.+.... ++.
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq--~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~gg 116 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQ--VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESGG 116 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcc--eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhccC
Confidence 344443 4466777777777875432 222222 3456678888887755 466677889999999864221 122
Q ss_pred -CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCceeeeeC-CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744 190 -LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGND-LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 190 -~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~-~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~ 258 (308)
+........+....++.+. .+.+.+++..+.......+ |...++++++.+. +.+.++.|..+.+-...+
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qeg 189 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEG 189 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhhhcc
Confidence 1111112234556677776 7899999988877775555 8889999999988 888888887665554443
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.23 E-value=39 Score=32.09 Aligned_cols=77 Identities=8% Similarity=-0.002 Sum_probs=44.1
Q ss_pred CCCCCccccccc-eeEEecCCCeeeccCCCcEEEEECCCCCCcc--cccceeeeeeeeeeeecCCceEEeeCCCeEEEEE
Q 021744 59 PLPPAATANGAA-AKRFANNTWGRNNNFNNHSNNYRAGNSKNSN--INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWT 135 (308)
Q Consensus 59 ~~~~~~~gh~~~-~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 135 (308)
.+....--|... .+.|+.+...+.-..||++++|++-...... .........+..|.++..|-.+-...+..+.+-+
T Consensus 75 lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~ 154 (829)
T KOG2280|consen 75 LLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILING 154 (829)
T ss_pred chHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcC
Confidence 344444444444 6888888877888999999999984221111 0111122237778888877554333333444433
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.44 E-value=23 Score=31.50 Aligned_cols=111 Identities=6% Similarity=-0.024 Sum_probs=69.4
Q ss_pred eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeee---eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKT---DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL 146 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~ 146 (308)
++.||+|.+. |.--.|++|.+.+....++.......++.. +.... |.+..-+.--.+.-+-+|.+......++..
T Consensus 71 SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~-W~~s~e~A~i~~~G~e~y~v~pekrslRlV 149 (657)
T KOG2377|consen 71 SIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFC-WTSSTEIAFITDQGIEFYQVLPEKRSLRLV 149 (657)
T ss_pred EEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEE-EecCeeEEEEecCCeEEEEEchhhhhhhhh
Confidence 8999999999 999999999999985444333223223222 33333 333322333344556777776655567777
Q ss_pred eCcccceEEEEEeCCCCEEEEee--CCCcEEEEeCCCC
Q 021744 147 EGHQKVVSGITLPSGSDKLYSGS--KDETVRVWDCASG 182 (308)
Q Consensus 147 ~~h~~~v~~~~~~~~~~~l~s~s--~dg~v~~wd~~~~ 182 (308)
+.|.-.|.-..|.++.+.++-++ ..+++.=+.++++
T Consensus 150 ks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 150 KSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 78888898899998877644333 3444444444444
No 443
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.29 E-value=26 Score=29.33 Aligned_cols=136 Identities=11% Similarity=0.177 Sum_probs=88.7
Q ss_pred ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE---EEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee--
Q 021744 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC---AGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-- 223 (308)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~---~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-- 223 (308)
.+-+..+.++ ++++..+..+.-+++.|+.+... +..+...+-..++.-.|++..++. +.-+.+.|+.+.+..
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 4556667776 45777777888899999987543 333334455667778888888777 777888888765433
Q ss_pred --eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCccccccee-ccccCCCeEE-EEecCCCeEEEe
Q 021744 224 --SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS-LKVHTDSNRA-HFSRDVTSLLGS 290 (308)
Q Consensus 224 --~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~-~~s~d~~~l~~s 290 (308)
...........+++|.++-..+..|+-+.+-|+..+. +++.. .......+.. ..+++..+++.-
T Consensus 164 agrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~---sPvli~~~n~g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 164 AGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPH---SPVLIGSYNTGPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred eeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCC---CCeEEEEEecCCceEEEEecCCeeEEEEc
Confidence 3334445567899999977777889999999999864 22221 1122224555 555555555533
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.26 E-value=0.13 Score=45.06 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=88.8
Q ss_pred eEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE--cCCCEEE--EEcCCcEEEEEcCCCceee--ee
Q 021744 153 VSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIF--IGVTNFVKAWNTQTNTDLS--LS 226 (308)
Q Consensus 153 v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~--~~~d~~i~~wd~~~~~~~~--~~ 226 (308)
.....|-+.+..++.++.+..|..||-. ++.......+.....+. .++..++ +-..+.+.+||+.+..... ..
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 3455677877778888888999999944 55554444333332222 2344433 3348899999998765442 22
Q ss_pred C-CCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeec
Q 021744 227 G-PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVS 292 (308)
Q Consensus 227 ~-~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s 292 (308)
+ +.... +.|++. .++.+...|.+.|++-.+. +.+...-.|...+.+ ++.+.+..+...++
T Consensus 116 g~~s~sl--l~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 116 GTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred CcchHHH--HhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEecccceeeecCcH
Confidence 2 22222 667777 7888889999999998875 445555558888888 99999887777664
No 445
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=83.24 E-value=3.5 Score=21.22 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=19.5
Q ss_pred EEEEeeCCCcEEEEeCCCCeEEEEE
Q 021744 164 KLYSGSKDETVRVWDCASGQCAGVI 188 (308)
Q Consensus 164 ~l~s~s~dg~v~~wd~~~~~~~~~~ 188 (308)
.++.++.++.+..+|.++|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777788888888888888877653
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.02 E-value=30 Score=29.15 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=81.3
Q ss_pred CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccceeEEec--CCCe--eeccCCCcEEEEECCCCCCc
Q 021744 26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAKRFAN--NTWG--RNNNFNNHSNNYRAGNSKNS 100 (308)
Q Consensus 26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~--~g~~--~s~~~d~~i~vwd~~~~~~~ 100 (308)
...++.++.|++|.-|+..-.-. +...++.-+ ....+..-..+++.+ .+.. ++--..++|.|+|-.-.+..
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d----~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVD----ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEc----cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 35678899999999998654400 000000000 000111111455543 3444 66667899999987422211
Q ss_pred cc--------cc------ceeeeeeeeeee---ecCCce-EEeeCCCeEEEEEcCCCceeeeEee--CcccceEEEEEeC
Q 021744 101 NI--------NN------RAVIKTDILCRN---WVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE--GHQKVVSGITLPS 160 (308)
Q Consensus 101 ~~--------~~------~~~~~~~~~~~~---~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~~~ 160 (308)
.. +. ...-.....+.| .+++.- +.|..-|.|-+||+... .++.+. +.-...+.|+..|
T Consensus 176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeCh
Confidence 00 00 000000111122 122211 44555678888887643 455443 2334456677644
Q ss_pred ------CCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744 161 ------GSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (308)
Q Consensus 161 ------~~~~l~s~s~dg~v~~wd~~~~~~~~~~~ 189 (308)
.+.+|+---.||+|..+|..+++.+..+.
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 35566666678888888888888776665
No 447
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=81.74 E-value=5.1 Score=21.68 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEeeCCCcEEEEeCCCCeEEEEEeC
Q 021744 165 LYSGSKDETVRVWDCASGQCAGVINL 190 (308)
Q Consensus 165 l~s~s~dg~v~~wd~~~~~~~~~~~~ 190 (308)
++.++.+|.+.-.|.++|+.+..++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 45557788888888888888877763
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=80.92 E-value=12 Score=29.67 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=38.4
Q ss_pred CEEEEEEeC-CEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 231 QVYAMAVGN-DLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 231 ~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
....++-.+ |.|+.+.....|.+|++.... .+++.++..- +.|.. .++.-|+||++--
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~--~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEE--CPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCC--CceeEEEcch-hheeEEEeccccceEEEEE
Confidence 344455555 644333566789999999432 2666667654 55556 9999999999654
No 449
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=80.84 E-value=33 Score=29.00 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=56.5
Q ss_pred EEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc---------------------CCcEE
Q 021744 155 GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV---------------------TNFVK 213 (308)
Q Consensus 155 ~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---------------------d~~i~ 213 (308)
+-.|+ ++++.++=+..|.+..+|.++|+.......++....+...|.++++|. ..-|.
T Consensus 207 SPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~ 285 (335)
T TIGR03032 207 SPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVA 285 (335)
T ss_pred CCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEE
Confidence 34455 577888888999999999988876665555554444432366665542 12356
Q ss_pred EEEcCCCcee---eeeCCCCCEEEEEEeCC
Q 021744 214 AWNTQTNTDL---SLSGPVGQVYAMAVGND 240 (308)
Q Consensus 214 ~wd~~~~~~~---~~~~~~~~v~~~~~~~~ 240 (308)
+.|++++... .+.+.-.++.++++.|.
T Consensus 286 vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 286 VIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 7788888765 45555667788888777
No 450
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.79 E-value=41 Score=30.01 Aligned_cols=137 Identities=7% Similarity=-0.019 Sum_probs=79.3
Q ss_pred EEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC-----CeeE
Q 021744 123 MYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-----GEVG 195 (308)
Q Consensus 123 ~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~-----~~v~ 195 (308)
+.+-..|.+.-|-+.... .++.--...+++|.++.|++|.+.++.--.+.+|.+++....+....+.+. ..+-
T Consensus 37 lfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~Il 116 (657)
T KOG2377|consen 37 LFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANIL 116 (657)
T ss_pred EEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeE
Confidence 444444555555543221 122211234679999999999999999999999999998654444333321 2233
Q ss_pred EE-EcCCCEEEEEcCCcEEEEEcCCC--ceeeeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCCC
Q 021744 196 CM-ISEGPWIFIGVTNFVKAWNTQTN--TDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 196 ~~-~~~~~~l~~~~d~~i~~wd~~~~--~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~ 259 (308)
.+ |.+..-++.-.+.-+-+|-.... +....+.|.-.|.=-.|.++ +|+++-..+.+.=+.++++
T Consensus 117 GF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 117 GFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 33 56666666555555555544332 22244556666776777777 3444435555555666553
No 451
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.47 E-value=19 Score=35.70 Aligned_cols=90 Identities=10% Similarity=-0.046 Sum_probs=56.9
Q ss_pred EcCCCEEEE--EcCC-cEEEEEcCCCcee------eee------CCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744 198 ISEGPWIFI--GVTN-FVKAWNTQTNTDL------SLS------GPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 198 ~~~~~~l~~--~~d~-~i~~wd~~~~~~~------~~~------~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~ 259 (308)
.+|....++ ..+| .|..||+++.... .+. .......++.|.|. ..+....|+.|++..+...
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~ 188 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL 188 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence 466665553 2333 7899999865321 111 12235577888887 6778888999999887754
Q ss_pred CcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744 260 TNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV 291 (308)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~ 291 (308)
. ..+..+ .-....++ +|+|-|+.++.+-
T Consensus 189 ~---~~v~s~-p~t~~~Tav~WSprGKQl~iG~ 217 (1405)
T KOG3630|consen 189 A---QNVTSF-PVTNSQTAVLWSPRGKQLFIGR 217 (1405)
T ss_pred h---hhhccc-CcccceeeEEeccccceeeEec
Confidence 2 222332 23456677 9999999777443
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.68 E-value=2.8 Score=40.07 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=79.9
Q ss_pred CCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCC--CCeEEEEEe------CCCeeEEE-
Q 021744 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCA--SGQCAGVIN------LGGEVGCM- 197 (308)
Q Consensus 128 d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~--~~~~~~~~~------~~~~v~~~- 197 (308)
.+.+++-+..+....-..+++-.+.|-.+.|.. +...+. -.-|.+.+||+. .|+....+. ....+.-+
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 456666665543211123456667777888743 222332 334678899876 344333322 11222111
Q ss_pred ----EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEE-----------EeCC--EEEEEcCCCeEEEEEcCC-
Q 021744 198 ----ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMA-----------VGND--LLFAGTQDGAILAWKFNV- 258 (308)
Q Consensus 198 ----~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~-----------~~~~--~l~~g~~dg~i~iwd~~~- 258 (308)
.++.-++..+. ++.+++....+.....+.+|...+..++ .+|| .|+.++.||.+++|.+.-
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence 23444555555 6677776665543333334655554443 4677 888888899888887652
Q ss_pred CCcccccceeccccCC
Q 021744 259 TTNCFEPAASLKVHTD 274 (308)
Q Consensus 259 ~~~~~~~~~~~~~~~~ 274 (308)
+....+++...+.|..
T Consensus 268 g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDK 283 (1283)
T ss_pred ccccHhhhhccCCCCC
Confidence 3333467777788874
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.60 E-value=50 Score=29.18 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=69.5
Q ss_pred eEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE-EEEe--CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCc-----e
Q 021744 153 VSGITLPSGSDKLYSGSKDETVRVWDCASGQCA-GVIN--LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNT-----D 222 (308)
Q Consensus 153 v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~-~~~~--~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~-----~ 222 (308)
...+...+++.+++.+..-..++-||- ++.. .... ....+..+ .+++.+++++..|.+..= ...++ .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEe-cCCCCcccccc
Confidence 344555677666665554333333442 2211 1122 23334443 367788888877765543 22222 1
Q ss_pred e-eee--CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEE
Q 021744 223 L-SLS--GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIM 295 (308)
Q Consensus 223 ~-~~~--~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i 295 (308)
. ... .....+.++.+.++ .++.++..|.+....-.-.. ++....-..-...... .|.++++.++++....|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~t--W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKS--WKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcc--eeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 1 111 12235889999888 67777788877766422211 2332221222334555 77776666665544443
No 454
>PRK10115 protease 2; Provisional
Probab=75.25 E-value=80 Score=30.30 Aligned_cols=104 Identities=12% Similarity=-0.038 Sum_probs=61.1
Q ss_pred eeeeeeecCCceE-E-----eeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC------CcEEEEe
Q 021744 111 DILCRNWVQGNCM-Y-----GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWD 178 (308)
Q Consensus 111 ~~~~~~~~~~~~~-~-----g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~v~~wd 178 (308)
+....++|++..+ . |++.-.|++.|+.++......+.+ .. ..++|.+|++.|+-...+ ..|+.++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4556678888652 2 445567899999887322222322 22 468999998766554332 3688888
Q ss_pred CCCC--eEEEEEeC-CCee--EEEEc-CCCEEEEEc----CCcEEEEEc
Q 021744 179 CASG--QCAGVINL-GGEV--GCMIS-EGPWIFIGV----TNFVKAWNT 217 (308)
Q Consensus 179 ~~~~--~~~~~~~~-~~~v--~~~~~-~~~~l~~~~----d~~i~~wd~ 217 (308)
+.++ +-...+.. .... ....+ ++++++... ++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8887 33334432 2212 22233 777766422 567889984
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=74.10 E-value=42 Score=26.62 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=76.4
Q ss_pred EeeCCCeEEEEEcCC-CceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC------cEEEE---eCC--CCeEEEE----
Q 021744 124 YGEKCKFLHSWTVGD-GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE------TVRVW---DCA--SGQCAGV---- 187 (308)
Q Consensus 124 ~g~~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg------~v~~w---d~~--~~~~~~~---- 187 (308)
.+.....|.+|++.+ ..+.+..+. --+.|..+.++..|++|+|--.+. .+++| ... ..+++..
T Consensus 33 va~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG 111 (215)
T PF14761_consen 33 VAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAG 111 (215)
T ss_pred EEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcc
Confidence 336667899999983 335566665 458999999999999999875432 45655 222 1122221
Q ss_pred -----------------Ee--CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCcee-------ee-----eCC-CCCEE
Q 021744 188 -----------------IN--LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL-------SL-----SGP-VGQVY 233 (308)
Q Consensus 188 -----------------~~--~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~-------~~-----~~~-~~~v~ 233 (308)
++ ...+..|+ ++-..-|++|.++.+.+|.+...... .+ .-| .-.+.
T Consensus 112 ~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~ 191 (215)
T PF14761_consen 112 HRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPT 191 (215)
T ss_pred cccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEE
Confidence 11 11222333 34444566677888888877644321 11 111 22356
Q ss_pred EEEEeCCEEEEEcCCCeEEEEEc
Q 021744 234 AMAVGNDLLFAGTQDGAILAWKF 256 (308)
Q Consensus 234 ~~~~~~~~l~~g~~dg~i~iwd~ 256 (308)
.+++..+++|..++ -.++++.+
T Consensus 192 ~v~ic~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 192 QVAICEGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred EEEEEeeEEEEecC-CEEEEEEE
Confidence 77777777777664 36666654
No 456
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=73.88 E-value=12 Score=20.13 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=18.4
Q ss_pred cccceEEEEEeCCCCEEEEee-CC--CcEEEE
Q 021744 149 HQKVVSGITLPSGSDKLYSGS-KD--ETVRVW 177 (308)
Q Consensus 149 h~~~v~~~~~~~~~~~l~s~s-~d--g~v~~w 177 (308)
....-....|+|||+.|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667889999998876544 44 555554
No 457
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=73.73 E-value=76 Score=29.40 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=77.7
Q ss_pred eeeeeeecCC-----ceEEeeCCCeEEEEEcCCC----ceeeeEeeCc-cc--c--eEEEEEeCCCCEEEEeeCCCcEEE
Q 021744 111 DILCRNWVQG-----NCMYGEKCKFLHSWTVGDG----FKLLTQLEGH-QK--V--VSGITLPSGSDKLYSGSKDETVRV 176 (308)
Q Consensus 111 ~~~~~~~~~~-----~~~~g~~d~~i~iwd~~~~----~~~~~~~~~h-~~--~--v~~~~~~~~~~~l~s~s~dg~v~~ 176 (308)
+..+.|.|.+ .+++-...+.|.+|.+... .+.+..-..+ .. + ...+.|+|....|+.-.....-.+
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~ 138 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL 138 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence 6667777764 2356677889999998621 0222211111 11 1 246779998887766665555566
Q ss_pred EeCCCC--eEEEEEeCCCeeEEE--EcCCCEEEEEcCC--cEEEEEcCCCcee-----eeeCCCCCEEEEEEeCC-EEEE
Q 021744 177 WDCASG--QCAGVINLGGEVGCM--ISEGPWIFIGVTN--FVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND-LLFA 244 (308)
Q Consensus 177 wd~~~~--~~~~~~~~~~~v~~~--~~~~~~l~~~~d~--~i~~wd~~~~~~~-----~~~~~~~~v~~~~~~~~-~l~~ 244 (308)
++++.. +....++..+.+-|. ..||+.|+++-.. .-++||-...... ....-.+.|.++.-.-| .+|.
T Consensus 139 ~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAv 218 (671)
T PF15390_consen 139 PSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAV 218 (671)
T ss_pred eeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEE
Confidence 666643 333445556666544 5789988866544 5578986554322 11223345666655555 5555
Q ss_pred EcC
Q 021744 245 GTQ 247 (308)
Q Consensus 245 g~~ 247 (308)
+++
T Consensus 219 aTE 221 (671)
T PF15390_consen 219 ATE 221 (671)
T ss_pred Eec
Confidence 543
No 458
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=73.47 E-value=56 Score=27.73 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=31.3
Q ss_pred EEeeC-----CCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCC----cEEEEeCCCCeE
Q 021744 123 MYGEK-----CKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE----TVRVWDCASGQC 184 (308)
Q Consensus 123 ~~g~~-----d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----~v~~wd~~~~~~ 184 (308)
+.|+. ...+..||+.+.. +.+..+... ......+...+++..+.|+.++ .+..||.++.+-
T Consensus 128 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 128 VGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred EEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 66653 2467888887652 112122211 1112222233556667776654 356888887653
No 459
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=73.12 E-value=13 Score=20.18 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=23.3
Q ss_pred CCCCEEEE-eeCCCcEEEEeCCCCeEEEEEeC
Q 021744 160 SGSDKLYS-GSKDETVRVWDCASGQCAGVINL 190 (308)
Q Consensus 160 ~~~~~l~s-~s~dg~v~~wd~~~~~~~~~~~~ 190 (308)
|+++.|+. .-.+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 46665544 44688999999999988887774
No 460
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=73.10 E-value=56 Score=27.58 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=52.1
Q ss_pred eCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE-----------EcCCCEEEEEc-CCcEEEEEcCCCcee-ee
Q 021744 159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM-----------ISEGPWIFIGV-TNFVKAWNTQTNTDL-SL 225 (308)
Q Consensus 159 ~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-----------~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~ 225 (308)
+++...=+.+..-|.|-++|+. ++.++.+.......+- ...+.+|+.-. ||+|..||..+++.+ .+
T Consensus 209 d~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 209 DADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 3333344555566899999976 8888888755544321 13466666544 999999999988866 44
Q ss_pred eCCC------CCEEEEEEeC
Q 021744 226 SGPV------GQVYAMAVGN 239 (308)
Q Consensus 226 ~~~~------~~v~~~~~~~ 239 (308)
.... ..++.|.|-.
T Consensus 288 ~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 288 LDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred cCCCCCeEEecCeEEeeeCC
Confidence 4332 2457777754
No 461
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=72.98 E-value=53 Score=27.27 Aligned_cols=117 Identities=8% Similarity=-0.064 Sum_probs=68.1
Q ss_pred ccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccccee-eeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCcee
Q 021744 66 ANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAV-IKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKL 142 (308)
Q Consensus 66 gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~ 142 (308)
|.....|+.+|+|+. ++.-.++-|-.-|..++.......... +...+.+...+.+.. ++....+.++-+|..+..-.
T Consensus 188 G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~ 267 (353)
T COG4257 188 GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI 267 (353)
T ss_pred CCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce
Confidence 333337899999999 776677777666665442221111111 222344444556655 66666677888887765333
Q ss_pred eeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (308)
Q Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~ 182 (308)
...|.+.+..-.++.++..++..++--.-+.|.-+|.++.
T Consensus 268 eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 268 EYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred eeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 4455566666677777766665555555566666665543
No 462
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=72.11 E-value=14 Score=20.10 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=12.3
Q ss_pred EEeCCEEEEEcCCCeEEEEEcC
Q 021744 236 AVGNDLLFAGTQDGAILAWKFN 257 (308)
Q Consensus 236 ~~~~~~l~~g~~dg~i~iwd~~ 257 (308)
++..+.++.++.||.++.+|.+
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT
T ss_pred EEECCEEEEEcCCCEEEEEeCC
Confidence 3443466666666666666654
No 463
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=71.64 E-value=64 Score=27.63 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=33.5
Q ss_pred CCEEEEEEeCC---------EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEe
Q 021744 230 GQVYAMAVGND---------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGS 290 (308)
Q Consensus 230 ~~v~~~~~~~~---------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s 290 (308)
..+..+.|.+. +|++.-..+.|....+.......+....+......+.. ++.|||.+.++.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 45667777532 55555556788888886542111111222344446777 999999766654
No 464
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=71.35 E-value=98 Score=29.63 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=58.7
Q ss_pred CCCEEEEeeCCCcEEEEeCCC-------C-------------eEEEEEeCCCeeEEE--E--cCCCEEEEEcCC-cEEEE
Q 021744 161 GSDKLYSGSKDETVRVWDCAS-------G-------------QCAGVINLGGEVGCM--I--SEGPWIFIGVTN-FVKAW 215 (308)
Q Consensus 161 ~~~~l~s~s~dg~v~~wd~~~-------~-------------~~~~~~~~~~~v~~~--~--~~~~~l~~~~d~-~i~~w 215 (308)
..+.|+.|..||.|.+|.+++ . ++...+..+.....+ . ...++||+++++ .|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 457889999999999996532 1 011222233333333 2 345677777744 56655
Q ss_pred EcCC--Ccee--eeeCCCCCEEEEEEeCC--------EEEEEcCCCeEEEEEcC
Q 021744 216 NTQT--NTDL--SLSGPVGQVYAMAVGND--------LLFAGTQDGAILAWKFN 257 (308)
Q Consensus 216 d~~~--~~~~--~~~~~~~~v~~~~~~~~--------~l~~g~~dg~i~iwd~~ 257 (308)
-... .+.. .-..+...|.+++|.++ .+++++-.|.+.+|++.
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 4332 2211 11235567888998654 57788899999998883
No 465
>PRK10115 protease 2; Provisional
Probab=71.14 E-value=1e+02 Score=29.65 Aligned_cols=185 Identities=9% Similarity=-0.108 Sum_probs=97.3
Q ss_pred eeEEecCCCe--eeccCC----CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee------CCCeEEEEEcC
Q 021744 71 AKRFANNTWG--RNNNFN----NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE------KCKFLHSWTVG 137 (308)
Q Consensus 71 ~i~~s~~g~~--~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~------~d~~i~iwd~~ 137 (308)
.+.++|+|++ ++...+ .+|++-|+.+++.+........ ..+.|.+++.. +... ....|+.+++.
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 5788999997 333333 3588999987764322222221 34777877743 3322 22468888888
Q ss_pred CCce-eeeEeeCcccceE-EEEEeCCCCEEEEeeC---CCcEEEEeCC--CCeEEEEEeCC--CeeEEEEcCCCEEEEEc
Q 021744 138 DGFK-LLTQLEGHQKVVS-GITLPSGSDKLYSGSK---DETVRVWDCA--SGQCAGVINLG--GEVGCMISEGPWIFIGV 208 (308)
Q Consensus 138 ~~~~-~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~---dg~v~~wd~~--~~~~~~~~~~~--~~v~~~~~~~~~l~~~~ 208 (308)
++.. -...+........ ....+.++++++..+. ++.+.+++.. +++....+... .........+.+++...
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn 287 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSN 287 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEc
Confidence 7721 1222332222333 2233447776544333 4578888843 34433333322 22222223333444332
Q ss_pred -C---CcEEEEEcC-CCceeeeeCC-C-CCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744 209 -T---NFVKAWNTQ-TNTDLSLSGP-V-GQVYAMAVGND-LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 209 -d---~~i~~wd~~-~~~~~~~~~~-~-~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~ 258 (308)
+ ..|...++. .++...+..+ . ..+..+.+..+ ++++...+|.-+++-+..
T Consensus 288 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 288 RHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred CCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcC
Confidence 2 244444555 2333344444 3 36888888888 777777788766665543
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.92 E-value=82 Score=32.06 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=50.4
Q ss_pred eeeeeeecCCceEEeeCCCeEE--EEEcCCCc--e-----------------eeeEee-CcccceEEEEEeCCCCEEEEe
Q 021744 111 DILCRNWVQGNCMYGEKCKFLH--SWTVGDGF--K-----------------LLTQLE-GHQKVVSGITLPSGSDKLYSG 168 (308)
Q Consensus 111 ~~~~~~~~~~~~~~g~~d~~i~--iwd~~~~~--~-----------------~~~~~~-~h~~~v~~~~~~~~~~~l~s~ 168 (308)
+.++....+|+...++.||.|+ +|....+. + .+-.+. .+.++|..++++..-..+.+-
T Consensus 181 V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~l 260 (1311)
T KOG1900|consen 181 VNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVL 260 (1311)
T ss_pred EEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeee
Confidence 6677777788888888888543 22222221 0 011223 567899999999888889999
Q ss_pred eCCCcEEEEeCCC
Q 021744 169 SKDETVRVWDCAS 181 (308)
Q Consensus 169 s~dg~v~~wd~~~ 181 (308)
++.++|.+||+..
T Consensus 261 sek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 261 SEKGTVSAYDIGG 273 (1311)
T ss_pred ccCceEEEEEccC
Confidence 9999999999986
No 467
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=68.41 E-value=28 Score=33.32 Aligned_cols=91 Identities=9% Similarity=0.046 Sum_probs=46.7
Q ss_pred eeEEecCCCe-eeccCCC-----cEEEEECCCCCCcccccc-eeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceee
Q 021744 71 AKRFANNTWG-RNNNFNN-----HSNNYRAGNSKNSNINNR-AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLL 143 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~-----~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~ 143 (308)
.+.|-|+|+. +|-+.|+ .|+.+..+.-+-..-... +........++........-...+.+++|-..+-.-.+
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYL 330 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYL 330 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEE
Confidence 4899999999 8877554 355665432211111111 11111333444444334444566789999876542111
Q ss_pred eEeeCcccceEEEEEeCCC
Q 021744 144 TQLEGHQKVVSGITLPSGS 162 (308)
Q Consensus 144 ~~~~~h~~~v~~~~~~~~~ 162 (308)
+ ..-.-..+.-+.|+|..
T Consensus 331 K-~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 331 K-VERQIPGISYVKWHPEE 348 (1243)
T ss_pred E-EeecCCCcceeeecccc
Confidence 1 11123456677888754
No 468
>PLN02193 nitrile-specifier protein
Probab=68.40 E-value=93 Score=28.20 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=68.8
Q ss_pred EEeeCC-----CeEEEEEcCCCc-eeeeEee--CcccceEEEEEeCCCCEEEEeeCCC-----cEEEEeCCCCeEEEEEe
Q 021744 123 MYGEKC-----KFLHSWTVGDGF-KLLTQLE--GHQKVVSGITLPSGSDKLYSGSKDE-----TVRVWDCASGQCAGVIN 189 (308)
Q Consensus 123 ~~g~~d-----~~i~iwd~~~~~-~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg-----~v~~wd~~~~~~~~~~~ 189 (308)
+.|+.+ ..+..||+.+.. +.+..+. .....-.+++.. ++++.+.|+.++ .+..||+.+.+-...-.
T Consensus 233 vfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~ 311 (470)
T PLN02193 233 VFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCST 311 (470)
T ss_pred EECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCC
Confidence 667654 457888887752 1111110 011111222222 455666666543 46778877654322111
Q ss_pred C------CCeeEEEEcCCCEEEEEc-C----CcEEEEEcCCCceeeeeCC-----CCCEEEEEEeCC-EEEEEcCC----
Q 021744 190 L------GGEVGCMISEGPWIFIGV-T----NFVKAWNTQTNTDLSLSGP-----VGQVYAMAVGND-LLFAGTQD---- 248 (308)
Q Consensus 190 ~------~~~v~~~~~~~~~l~~~~-d----~~i~~wd~~~~~~~~~~~~-----~~~v~~~~~~~~-~l~~g~~d---- 248 (308)
. .........++++++.+. + ..+.+||+.+.+-..+... .....+++...+ +++.|+..
T Consensus 312 ~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~ 391 (470)
T PLN02193 312 PGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDP 391 (470)
T ss_pred CCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCcc
Confidence 0 111122344667666554 3 4689999998766533211 112233334445 66666643
Q ss_pred ----------CeEEEEEcCCCC
Q 021744 249 ----------GAILAWKFNVTT 260 (308)
Q Consensus 249 ----------g~i~iwd~~~~~ 260 (308)
..+.+||+.+..
T Consensus 392 ~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 392 LAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ccccCccceeccEEEEEcCcCE
Confidence 247788887754
No 469
>PLN02153 epithiospecifier protein
Probab=67.92 E-value=78 Score=27.13 Aligned_cols=136 Identities=16% Similarity=0.246 Sum_probs=65.9
Q ss_pred EEeeCC-----CeEEEEEcCCCc-eeeeEee----CcccceEEEEEeCCCCEEEEeeCC-----------CcEEEEeCCC
Q 021744 123 MYGEKC-----KFLHSWTVGDGF-KLLTQLE----GHQKVVSGITLPSGSDKLYSGSKD-----------ETVRVWDCAS 181 (308)
Q Consensus 123 ~~g~~d-----~~i~iwd~~~~~-~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~d-----------g~v~~wd~~~ 181 (308)
+.|+.+ ..+.+||+.+.. +.+..+. .....-.+++. -++++.+.|+.+ ..+.+||.++
T Consensus 90 v~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~ 168 (341)
T PLN02153 90 IFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD 168 (341)
T ss_pred EECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCC
Confidence 666643 357788887652 1111110 00111122233 245566666653 2477888886
Q ss_pred CeEEEEEeCC------CeeEEEEcCCCEEEEEc-C-------------CcEEEEEcCCCceeeeeC----C-CCCEEEEE
Q 021744 182 GQCAGVINLG------GEVGCMISEGPWIFIGV-T-------------NFVKAWNTQTNTDLSLSG----P-VGQVYAMA 236 (308)
Q Consensus 182 ~~~~~~~~~~------~~v~~~~~~~~~l~~~~-d-------------~~i~~wd~~~~~~~~~~~----~-~~~v~~~~ 236 (308)
.+-...-... ........++++++.+. + ..+.+||+.+.+-..+.. . .....+++
T Consensus 169 ~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~ 248 (341)
T PLN02153 169 GKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA 248 (341)
T ss_pred CeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE
Confidence 5432211111 11122345666655432 1 468899998876553321 1 11223334
Q ss_pred EeCC-EEEEEcCC--------------CeEEEEEcCCC
Q 021744 237 VGND-LLFAGTQD--------------GAILAWKFNVT 259 (308)
Q Consensus 237 ~~~~-~l~~g~~d--------------g~i~iwd~~~~ 259 (308)
...+ +++.|+.. +.+..+|..+.
T Consensus 249 ~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 249 VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred EECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 4445 66666641 25777887765
No 470
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=67.49 E-value=84 Score=27.35 Aligned_cols=134 Identities=9% Similarity=0.111 Sum_probs=65.0
Q ss_pred cceEEEEEeCCCCEEEEee-----------CCC-cEEEEeCCC--CeE--EEEEeCC-CeeEEE--EcCCCEEEEEcCCc
Q 021744 151 KVVSGITLPSGSDKLYSGS-----------KDE-TVRVWDCAS--GQC--AGVINLG-GEVGCM--ISEGPWIFIGVTNF 211 (308)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~s-----------~dg-~v~~wd~~~--~~~--~~~~~~~-~~v~~~--~~~~~~l~~~~d~~ 211 (308)
.....|+|.++++++++-. ..+ .|.+++-.+ ++. ...+... .....+ .+++ |+++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4557888999888776643 223 666665432 332 2333311 112222 3455 44445444
Q ss_pred EEEE-EcCCC-----ce--e--eeeC----CCCCEEEEEEeCC---EEEEEcCC------------------CeEEEEEc
Q 021744 212 VKAW-NTQTN-----TD--L--SLSG----PVGQVYAMAVGND---LLFAGTQD------------------GAILAWKF 256 (308)
Q Consensus 212 i~~w-d~~~~-----~~--~--~~~~----~~~~v~~~~~~~~---~l~~g~~d------------------g~i~iwd~ 256 (308)
|..| |.... +. + .+.. +......+.+.|| ++..++.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 5444 54321 21 1 1211 1234778999998 44444211 33444444
Q ss_pred CCCCcccccceec-cccCCCeEEEEecCCCeEEEee
Q 021744 257 NVTTNCFEPAASL-KVHTDSNRAHFSRDVTSLLGSV 291 (308)
Q Consensus 257 ~~~~~~~~~~~~~-~~~~~~v~~~~s~d~~~l~~s~ 291 (308)
... + +..+ .++..+.-.+|+++|+++++-.
T Consensus 172 dg~----~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGG----K-LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCC----e-EEEEecCcCCCccceECCCCCEEEEcc
Confidence 443 1 1222 2333334348999988776533
No 471
>PRK13684 Ycf48-like protein; Provisional
Probab=66.69 E-value=83 Score=27.00 Aligned_cols=145 Identities=10% Similarity=0.042 Sum_probs=74.8
Q ss_pred ccceEEEEEeCCCCEEEEeeCCCcEEE-EeCCCCeEEEEEe--CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCceee
Q 021744 150 QKVVSGITLPSGSDKLYSGSKDETVRV-WDCASGQCAGVIN--LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLS 224 (308)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~-wd~~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~~ 224 (308)
...+..+.+.|++.+++.+. .|.+.. +| ..++.-.... ....+..+ .++++.++++..|.+.+=....++.-+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 45788899999876665554 454442 22 1122222222 22334443 467888888888876532233333221
Q ss_pred -eeC----CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEE
Q 021744 225 -LSG----PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFI 297 (308)
Q Consensus 225 -~~~----~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~ 297 (308)
... ....+.++.+.|+ .+..++.+|.+.. ....++. ++.+.....-...... .|..+++.++++....|..
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~ 327 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKT-WEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR 327 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCC-CeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence 111 1235788889887 5556667776653 3333311 2332211122234445 6666666666655555544
Q ss_pred e
Q 021744 298 G 298 (308)
Q Consensus 298 ~ 298 (308)
.
T Consensus 328 ~ 328 (334)
T PRK13684 328 Y 328 (334)
T ss_pred e
Confidence 3
No 472
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=64.79 E-value=23 Score=23.71 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC
Q 021744 209 TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND 240 (308)
Q Consensus 209 d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~ 240 (308)
+|.+..||..+++...+...-.-.+.+++++|
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d 67 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPD 67 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEEE-TT
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEEEcCC
Confidence 56667777777766544333445677777777
No 473
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=64.39 E-value=28 Score=23.30 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=26.8
Q ss_pred eeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEe
Q 021744 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG 168 (308)
Q Consensus 125 g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 168 (308)
+..+|.+..||+.++ +.. .+...-.-.+.+++++|++.++.+
T Consensus 33 ~~~~GRll~ydp~t~-~~~-vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTK-ETT-VLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTT-EEE-EEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCC-eEE-EehhCCCccCeEEEcCCCCEEEEE
Confidence 456789999999998 332 232234466899999999876654
No 474
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=63.96 E-value=60 Score=26.65 Aligned_cols=67 Identities=9% Similarity=-0.000 Sum_probs=45.9
Q ss_pred cccceEEEEEeC------C-CCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE------E-cCCCEEEEEcCCcEEE
Q 021744 149 HQKVVSGITLPS------G-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM------I-SEGPWIFIGVTNFVKA 214 (308)
Q Consensus 149 h~~~v~~~~~~~------~-~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~------~-~~~~~l~~~~d~~i~~ 214 (308)
+...|+||+--. + -..|+.|.++|.|.+.|.+....+.+++.++....+ . .+.++++++.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 456788887522 1 156999999999999999988888888755443322 1 3445555666887765
Q ss_pred E
Q 021744 215 W 215 (308)
Q Consensus 215 w 215 (308)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 3
No 475
>PLN02153 epithiospecifier protein
Probab=63.48 E-value=96 Score=26.58 Aligned_cols=52 Identities=23% Similarity=0.112 Sum_probs=28.1
Q ss_pred CcEEEEeCCCCeEEEEEeC---C---CeeEEEEcCCCEEEEEcC---------------CcEEEEEcCCCcee
Q 021744 172 ETVRVWDCASGQCAGVINL---G---GEVGCMISEGPWIFIGVT---------------NFVKAWNTQTNTDL 223 (308)
Q Consensus 172 g~v~~wd~~~~~~~~~~~~---~---~~v~~~~~~~~~l~~~~d---------------~~i~~wd~~~~~~~ 223 (308)
..+.+||+.+.+-...-.. + ....++..++++++.|.. +.+..||+.+.+-.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 4588889887653322111 1 112233455666665541 25778888776544
No 476
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=62.98 E-value=66 Score=24.51 Aligned_cols=29 Identities=24% Similarity=0.145 Sum_probs=25.4
Q ss_pred CCEEEEEEeCC--------EEEEEcCCCeEEEEEcCC
Q 021744 230 GQVYAMAVGND--------LLFAGTQDGAILAWKFNV 258 (308)
Q Consensus 230 ~~v~~~~~~~~--------~l~~g~~dg~i~iwd~~~ 258 (308)
..+.+++|||. +|++-+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37899999983 899999999999998764
No 477
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=61.89 E-value=1.1e+02 Score=26.82 Aligned_cols=138 Identities=11% Similarity=0.174 Sum_probs=73.0
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE------EcCCCE--EEEEc--C---CcEEEEEcC--CCceee
Q 021744 160 SGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM------ISEGPW--IFIGV--T---NFVKAWNTQ--TNTDLS 224 (308)
Q Consensus 160 ~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~------~~~~~~--l~~~~--d---~~i~~wd~~--~~~~~~ 224 (308)
|..++++....++-+.+||+. |+.++.+.... ..-+ --.++. |++.+ + .+|++|-+. ++....
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr-~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGR-PNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS--EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCC-cceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 345678888889999999988 66666665332 2211 124443 33333 2 468998665 444433
Q ss_pred eeC-------CCCCEEEEEE--eCC----EEEEEcCCCeEEEEEcCCCC---cccccceeccccCCCeEEEEecCCCeEE
Q 021744 225 LSG-------PVGQVYAMAV--GND----LLFAGTQDGAILAWKFNVTT---NCFEPAASLKVHTDSNRAHFSRDVTSLL 288 (308)
Q Consensus 225 ~~~-------~~~~v~~~~~--~~~----~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~s~d~~~l~ 288 (308)
+.. ....++.+|+ ++. +++....+|.+..|.+.... ...++++++......=-|........|.
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 221 1234677776 342 77778889999988886321 1224566665433222225555444444
Q ss_pred Eee-ceEEEEee
Q 021744 289 GSV-SFIMFIGQ 299 (308)
Q Consensus 289 ~s~-s~~i~~~~ 299 (308)
.+- ...||...
T Consensus 224 vgEE~~GIW~y~ 235 (381)
T PF02333_consen 224 VGEEDVGIWRYD 235 (381)
T ss_dssp EEETTTEEEEEE
T ss_pred EecCccEEEEEe
Confidence 433 55555543
No 478
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=59.61 E-value=18 Score=33.37 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=21.5
Q ss_pred CEEEEEEeC-----C-EEEEEcCCCeEEEEEcCCC
Q 021744 231 QVYAMAVGN-----D-LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 231 ~v~~~~~~~-----~-~l~~g~~dg~i~iwd~~~~ 259 (308)
.+.+++++. + ++++-+.|+++|+||+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG 250 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC
Confidence 444555544 3 9999999999999999997
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=59.44 E-value=27 Score=33.12 Aligned_cols=67 Identities=7% Similarity=0.163 Sum_probs=40.8
Q ss_pred ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCe-eEEEEcCCCEEEEEcCCcEEEEE
Q 021744 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-VGCMISEGPWIFIGVTNFVKAWN 216 (308)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~-v~~~~~~~~~l~~~~d~~i~~wd 216 (308)
...++++.-+|.++-+++++.||++++|+.......+......+ -.-++.+..++.+.+|..+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheee
Confidence 44567888889999999999999999999875544222221111 12223333344444555555553
No 480
>PRK13684 Ycf48-like protein; Provisional
Probab=56.40 E-value=1.3e+02 Score=25.83 Aligned_cols=143 Identities=8% Similarity=-0.056 Sum_probs=76.7
Q ss_pred eeeeeeecCCceEEeeCCCeEEEE-EcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744 111 DILCRNWVQGNCMYGEKCKFLHSW-TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (308)
Q Consensus 111 ~~~~~~~~~~~~~~g~~d~~i~iw-d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~ 189 (308)
+..+.+.+++..+..+..|.+..- +- .+..-......-...++++.+.++++.++.+ ..|.+.+=....++.-....
T Consensus 175 ~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~ 252 (334)
T PRK13684 175 VRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPI 252 (334)
T ss_pred EEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccccc
Confidence 555666777766666666665532 21 1111111122334678899999988766654 55766543334443332222
Q ss_pred CC-----CeeEEE--EcCCCEEEEEcCCcEEEEEcCCCcee-ee---eCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEc
Q 021744 190 LG-----GEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL-SL---SGPVGQVYAMAVGND-LLFAGTQDGAILAWKF 256 (308)
Q Consensus 190 ~~-----~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~-~~---~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~ 256 (308)
.+ ..+..+ .+++..++++.+|.+.. ....++.- .. ..-....+.+.+..+ ..+..+..|.|.-|+-
T Consensus 253 ~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 253 IPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 11 123333 35667777777886653 33333322 21 222335777777655 5555677888877763
No 481
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=55.73 E-value=1.5e+02 Score=26.43 Aligned_cols=235 Identities=9% Similarity=-0.061 Sum_probs=0.0
Q ss_pred ecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEEC
Q 021744 16 LGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRA 94 (308)
Q Consensus 16 ~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~ 94 (308)
+|+..........|+.||..|.+|+++.......+-..+.+.+-..+.++=-.+. -.+..... +..-.-+.+.||.+
T Consensus 27 v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~--F~s~~~~~~LaVLhP~kl~vY~v 104 (418)
T PF14727_consen 27 VGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGK--FVSGSEDLQLAVLHPRKLSVYSV 104 (418)
T ss_pred EEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEecc--ccCCCCcceEEEecCCEEEEEEE
Q ss_pred --CCCC------Ccccccceeeee--eeeeeeecCC------ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEE
Q 021744 95 --GNSK------NSNINNRAVIKT--DILCRNWVQG------NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL 158 (308)
Q Consensus 95 --~~~~------~~~~~~~~~~~~--~~~~~~~~~~------~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~ 158 (308)
..+. ........|.-. ...+..-+-| ....-+-||.+.+|+-+.- ...+.+.. .--.-.+.+
T Consensus 105 ~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y 182 (418)
T PF14727_consen 105 SLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCY 182 (418)
T ss_pred EecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEE
Q ss_pred eCCCCEEEEeeCCCcEEEEeC-----------------------CCCeEEEEEeCCCeeEEE-----EcCCCEEEEEcCC
Q 021744 159 PSGSDKLYSGSKDETVRVWDC-----------------------ASGQCAGVINLGGEVGCM-----ISEGPWIFIGVTN 210 (308)
Q Consensus 159 ~~~~~~l~s~s~dg~v~~wd~-----------------------~~~~~~~~~~~~~~v~~~-----~~~~~~l~~~~d~ 210 (308)
.+....+++++.+..+..|.. +.-.+-+++..++.+..+ ......+++=+..
T Consensus 183 ~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger 262 (418)
T PF14727_consen 183 CPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGER 262 (418)
T ss_pred eecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecc
Q ss_pred cEEEEEcCCCceeeeeCCCCCEEEEEE-------eCC---EEEEEcCCCeEEEEE
Q 021744 211 FVKAWNTQTNTDLSLSGPVGQVYAMAV-------GND---LLFAGTQDGAILAWK 255 (308)
Q Consensus 211 ~i~~wd~~~~~~~~~~~~~~~v~~~~~-------~~~---~l~~g~~dg~i~iwd 255 (308)
++.+.+. +|+....+.......+++. .|+ .++.++.++.+.||.
T Consensus 263 ~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 263 SLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred eEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
No 482
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=53.61 E-value=92 Score=25.61 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=43.7
Q ss_pred CCCEEEEEEeC------C---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeE--E--EEe-cCCCeEEEeeceE
Q 021744 229 VGQVYAMAVGN------D---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNR--A--HFS-RDVTSLLGSVSFI 294 (308)
Q Consensus 229 ~~~v~~~~~~~------~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~--~--~~s-~d~~~l~~s~s~~ 294 (308)
...|+||+--+ + .|+.|+++|.|.|.|-... ..+..+.-..-++. . .|. -|.+.++++-+..
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af----~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~ 251 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAF----TILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGK 251 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhh----eeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCE
Confidence 34677776532 1 7899999999999998874 55555554444332 2 564 5666666666777
Q ss_pred EEEee
Q 021744 295 MFIGQ 299 (308)
Q Consensus 295 i~~~~ 299 (308)
||...
T Consensus 252 iy~ir 256 (257)
T PF14779_consen 252 IYTIR 256 (257)
T ss_pred EEEEe
Confidence 77653
No 483
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=53.48 E-value=1.4e+02 Score=25.31 Aligned_cols=88 Identities=10% Similarity=0.147 Sum_probs=44.6
Q ss_pred CCCEEEEeeC-----CCcEEEEeCCCCeEEEEEeCC--C--eeEEEEcCCCEEEEEc-CC----cEEEEEcCCCceeeee
Q 021744 161 GSDKLYSGSK-----DETVRVWDCASGQCAGVINLG--G--EVGCMISEGPWIFIGV-TN----FVKAWNTQTNTDLSLS 226 (308)
Q Consensus 161 ~~~~l~s~s~-----dg~v~~wd~~~~~~~~~~~~~--~--~v~~~~~~~~~l~~~~-d~----~i~~wd~~~~~~~~~~ 226 (308)
++...+.|+. ...+..||+.+.+-...-... . ...++..++++.+.|. ++ .+.+||.++.+-..+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 4555566654 235788888865432211111 1 1122345666666654 42 3568998887654332
Q ss_pred CC-----CC---CEEEEEEeCC-EEEEEcCC
Q 021744 227 GP-----VG---QVYAMAVGND-LLFAGTQD 248 (308)
Q Consensus 227 ~~-----~~---~v~~~~~~~~-~l~~g~~d 248 (308)
.. .. ...++.+..+ +++.|+.+
T Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 203 DPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 11 10 1223444445 77777765
No 484
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=53.27 E-value=28 Score=17.23 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=11.9
Q ss_pred EEEEEeCCCCEEEEeeCCCcEEE
Q 021744 154 SGITLPSGSDKLYSGSKDETVRV 176 (308)
Q Consensus 154 ~~~~~~~~~~~l~s~s~dg~v~~ 176 (308)
..++++++|+.+++=+....|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 45555555555555444444443
No 485
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=52.75 E-value=2.3e+02 Score=27.65 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=49.1
Q ss_pred ceEEeeCCCeEEEEEcCCCceeeeEeeC---cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE
Q 021744 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEG---HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM 197 (308)
Q Consensus 121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~ 197 (308)
..+.++.+|.|.++...+. ...+.+.. |...|+++.+...+-+++-.+.| ++++++.++..-.+.++....+...
T Consensus 637 d~~was~gG~V~vi~~tt~-~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtetl~hlqd~niaT~vt~~ 714 (925)
T KOG3522|consen 637 DFVWASEGGCVHVIPSTTF-IRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTETLWHLQDSNIATSVTVD 714 (925)
T ss_pred ceeeeecCCceEEEechhc-cccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecccccCCccccccCcceeec
Confidence 3577899999999998876 34444443 45678888888666555444443 5666676665555555544444433
Q ss_pred EcCC
Q 021744 198 ISEG 201 (308)
Q Consensus 198 ~~~~ 201 (308)
.|.+
T Consensus 715 lP~~ 718 (925)
T KOG3522|consen 715 LPFG 718 (925)
T ss_pred CCCc
Confidence 3433
No 486
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=51.75 E-value=1.5e+02 Score=25.09 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=38.7
Q ss_pred EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCC-----CEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744 198 ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVG-----QVYAMAVGND--LLFAGTQDGAILAWKF 256 (308)
Q Consensus 198 ~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~-----~v~~~~~~~~--~l~~g~~dg~i~iwd~ 256 (308)
..+|.+|++.. -..|.+.|.++++.+ .+.+... .-...++..+ ++-.+..++.|.+||=
T Consensus 152 ~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 152 DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred cCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 35688888877 679999999999888 5544412 1112344444 4445567788888886
No 487
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=51.47 E-value=1.5e+02 Score=25.11 Aligned_cols=142 Identities=10% Similarity=0.063 Sum_probs=64.5
Q ss_pred eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe-EEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEEEEcC-CCce
Q 021744 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-CAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQ-TNTD 222 (308)
Q Consensus 147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~-~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~-~~~~ 222 (308)
..-.+.+..+.-++++++++.++......-||.-... ..........+..+ .+++.+.+++..+.|++=+.. ..+.
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGET 220 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccc
Confidence 3455778888889999988888776666788754321 12222244556655 467777677777888877622 1111
Q ss_pred e-----eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccC-CCeEEEEecCCCeEEEe
Q 021744 223 L-----SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT-DSNRAHFSRDVTSLLGS 290 (308)
Q Consensus 223 ~-----~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~s~d~~~l~~s 290 (308)
. .+......+..+++.++ .+.+++..|.+ +.....++ .++.......-. ......|.++.+-++..
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGk-tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGK-TWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTS-S-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCc-cceECccccCCCCceEEEEEcCCCceEEEC
Confidence 1 11122335899999987 43334444533 23344432 133333333222 33344665554444433
No 488
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=51.32 E-value=1.8e+02 Score=26.91 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=30.6
Q ss_pred CCCCEEEEeeCCCcEEEEeCC---CCeEEEEEeCCCeeEEEEcCCCEE-EEEc
Q 021744 160 SGSDKLYSGSKDETVRVWDCA---SGQCAGVINLGGEVGCMISEGPWI-FIGV 208 (308)
Q Consensus 160 ~~~~~l~s~s~dg~v~~wd~~---~~~~~~~~~~~~~v~~~~~~~~~l-~~~~ 208 (308)
.||++|+..+ ++.|.|+|.. +.+.+..+.....+..+.-++..| +.+.
T Consensus 20 TDG~yIY~v~-~~~l~Iida~p~~~~~~~s~I~~~~~~~eLyl~gdrLvVi~~ 71 (521)
T PF09826_consen 20 TDGEYIYVVS-GGRLYIIDAYPAEEMKVVSRIDLDGSPQELYLDGDRLVVIGS 71 (521)
T ss_pred ECCCEEEEEe-CCEEEEEECCCchhceEEEEEecCCChhheEEcCCEEEEEEe
Confidence 3888888887 5788999883 456666666555555554444443 3443
No 489
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=50.29 E-value=1.7e+02 Score=25.47 Aligned_cols=11 Identities=18% Similarity=0.138 Sum_probs=8.3
Q ss_pred CeEEEEEcCCC
Q 021744 129 KFLHSWTVGDG 139 (308)
Q Consensus 129 ~~i~iwd~~~~ 139 (308)
..+.+||+.+.
T Consensus 189 ~~v~~YD~~t~ 199 (376)
T PRK14131 189 KEVLSYDPSTN 199 (376)
T ss_pred ceEEEEECCCC
Confidence 35888998776
No 490
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=49.39 E-value=1.8e+02 Score=25.52 Aligned_cols=188 Identities=12% Similarity=0.100 Sum_probs=97.7
Q ss_pred eeEEecC---CCe-eeccCCCcEEEEECCCCCCcccccceeeeeee-eeeeecCCc---eEEee-CC---CeEEEEEcCC
Q 021744 71 AKRFANN---TWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDI-LCRNWVQGN---CMYGE-KC---KFLHSWTVGD 138 (308)
Q Consensus 71 ~i~~s~~---g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~g~-~d---~~i~iwd~~~ 138 (308)
+|+.+|. .++ +.....+-+.+||++..+.- ....+.-..|- .-.|...+. ++.++ .+ ..|++|.+..
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq-~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~ 136 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDGKELQ-SLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP 136 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS-EEE-EE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCCcEEE-eecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecC
Confidence 7899864 344 55556677999999644321 11111111111 112223442 22333 22 5799997753
Q ss_pred CceeeeEeeC-------cccceEEEEEe--C-CCC-EEEEeeCCCcEEEEeCC---CC----eEEEEEeCCCeeEEEE--
Q 021744 139 GFKLLTQLEG-------HQKVVSGITLP--S-GSD-KLYSGSKDETVRVWDCA---SG----QCAGVINLGGEVGCMI-- 198 (308)
Q Consensus 139 ~~~~~~~~~~-------h~~~v~~~~~~--~-~~~-~l~s~s~dg~v~~wd~~---~~----~~~~~~~~~~~v~~~~-- 198 (308)
....+..+.. ....+..+|+- + ++. +++....+|.+..|-+. .+ +.+++|....++..+.
T Consensus 137 ~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVD 216 (381)
T PF02333_consen 137 DTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVD 216 (381)
T ss_dssp TTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEE
T ss_pred CCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEe
Confidence 2112333221 12346777763 3 344 56777889988888664 23 5677888666665443
Q ss_pred cCCCEEEEEc-CCcEEEEEcCCC-----cee-eeeC--CCCCEEEEEEe--CC---E-EEEEcCCCeEEEEEcCCC
Q 021744 199 SEGPWIFIGV-TNFVKAWNTQTN-----TDL-SLSG--PVGQVYAMAVG--ND---L-LFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 199 ~~~~~l~~~~-d~~i~~wd~~~~-----~~~-~~~~--~~~~v~~~~~~--~~---~-l~~g~~dg~i~iwd~~~~ 259 (308)
.....|+.+. +.-|.-|+.+.. +.+ ...+ ....|-.|++- ++ + |++.-.++...+|+....
T Consensus 217 De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 217 DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 3355778777 667888887632 122 1111 23467777764 23 4 455555788999998764
No 491
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=49.31 E-value=1.8e+02 Score=25.40 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=30.2
Q ss_pred EeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744 124 YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS 169 (308)
Q Consensus 124 ~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 169 (308)
.+..+|.+.-||..+.. .+.+...-.-...++.+||+.+++.+-
T Consensus 194 ~g~~~GRl~~YD~~tK~--~~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKV--TKVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred cCCCccceEEecCcccc--hhhhhhcccccccccCCCCCCEEEEEe
Confidence 35567888889887762 333333345567899999999887663
No 492
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.16 E-value=1.6e+02 Score=24.68 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=33.6
Q ss_pred cEEEEEcCCCceeee-eCCCCCEEEEEEeCC--EEEEEc------CCCeEEEEEcCCC
Q 021744 211 FVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGT------QDGAILAWKFNVT 259 (308)
Q Consensus 211 ~i~~wd~~~~~~~~~-~~~~~~v~~~~~~~~--~l~~g~------~dg~i~iwd~~~~ 259 (308)
.|++||..+.+-..+ .+-.+.|++|.|..+ +++.|. ....+..||+.+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 688898887776633 235568999998744 555554 3456788888875
No 493
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=48.73 E-value=2.8e+02 Score=27.34 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=32.6
Q ss_pred CCEEEEEcCCcEEEEEcCCCceeeeeCC---CCCEEEEEEeCCEEEEEcCCCeE
Q 021744 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGP---VGQVYAMAVGNDLLFAGTQDGAI 251 (308)
Q Consensus 201 ~~~l~~~~d~~i~~wd~~~~~~~~~~~~---~~~v~~~~~~~~~l~~g~~dg~i 251 (308)
.++++...-|.|+.|+..+.+.....-. --.+..|+|..+.++.++.||..
T Consensus 399 ~kll~lte~g~Vy~w~s~ns~~~~c~ftp~r~~~isdIa~~~N~~~~~t~dGc~ 452 (1267)
T KOG0783|consen 399 NKLLVLTELGEVYEWDSKNSTRTSCKFTPLRIFEISDIAWTANSLILCTRDGCW 452 (1267)
T ss_pred hheeeeccCCeEEEEecCCCceeeeecccceeeehhhhhhccceEEEEecCcce
Confidence 4556666688999999877655422211 12355677777767777888843
No 494
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=47.85 E-value=1.9e+02 Score=25.18 Aligned_cols=98 Identities=12% Similarity=0.011 Sum_probs=49.5
Q ss_pred eeEEecCCCe-eecc-----------CCC-cEEEEECCC--CCCccccccee-eeeeeeeeeecCCceEEeeCCCeEEEE
Q 021744 71 AKRFANNTWG-RNNN-----------FNN-HSNNYRAGN--SKNSNINNRAV-IKTDILCRNWVQGNCMYGEKCKFLHSW 134 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~-----------~d~-~i~vwd~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~d~~i~iw 134 (308)
.|+|.++|.. ++-. ..+ .|.+++-.+ ++......... ......+.+.+++ ++.+......++.
T Consensus 18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~ 96 (367)
T TIGR02604 18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLR 96 (367)
T ss_pred eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEe
Confidence 5899999998 5532 222 566665432 22211111111 1124566777787 5444444444444
Q ss_pred EcCC------Cce-eeeEeeC----cccceEEEEEeCCCCEEEEee
Q 021744 135 TVGD------GFK-LLTQLEG----HQKVVSGITLPSGSDKLYSGS 169 (308)
Q Consensus 135 d~~~------~~~-~~~~~~~----h~~~v~~~~~~~~~~~l~s~s 169 (308)
|... ..+ .+..+.. +......++|.||+.+.++-+
T Consensus 97 d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 97 DKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 5432 111 1222322 134467899999997766554
No 495
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=46.78 E-value=2.7e+02 Score=26.61 Aligned_cols=147 Identities=10% Similarity=-0.044 Sum_probs=0.0
Q ss_pred eeEEecCCCe-eeccCCCcEEEEEC--CCCCCcccccceeeeeeeeeeeecCCc---------eEEe--eCCCeEEEEEc
Q 021744 71 AKRFANNTWG-RNNNFNNHSNNYRA--GNSKNSNINNRAVIKTDILCRNWVQGN---------CMYG--EKCKFLHSWTV 136 (308)
Q Consensus 71 ~i~~s~~g~~-~s~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g--~~d~~i~iwd~ 136 (308)
.+.|.++++. +..-..|.|.+||. ...+........+...+..-.|-++.. .++. +..-..+++.+
T Consensus 134 ~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l 213 (670)
T PF10395_consen 134 GIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISL 213 (670)
T ss_pred EEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEe
Q ss_pred CCCceeeeEee---CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC--------CeeEEEEcCCCEEE
Q 021744 137 GDGFKLLTQLE---GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG--------GEVGCMISEGPWIF 205 (308)
Q Consensus 137 ~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~--------~~v~~~~~~~~~l~ 205 (308)
......+..+. .+........|.-....|.-- .++++.+|++...+...++..+ ..+.-..+..++++
T Consensus 214 ~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvL 292 (670)
T PF10395_consen 214 SNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVL 292 (670)
T ss_pred ccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEE
Q ss_pred EEcCCcEEEEEcC
Q 021744 206 IGVTNFVKAWNTQ 218 (308)
Q Consensus 206 ~~~d~~i~~wd~~ 218 (308)
.+.++.|++.|+.
T Consensus 293 Ls~~nkIyLld~~ 305 (670)
T PF10395_consen 293 LSVNNKIYLLDLK 305 (670)
T ss_pred EEcCCEEEEEeeh
No 496
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.90 E-value=3.1e+02 Score=27.19 Aligned_cols=71 Identities=13% Similarity=0.000 Sum_probs=40.3
Q ss_pred eEEEEcCCCEEEEEcCCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceecc
Q 021744 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLK 270 (308)
Q Consensus 194 v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (308)
..+..+++..++.|.|+...+-|....... ++. -.....++.+..-++++-. ++.|.||+..++ +.++++.
T Consensus 205 ~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~l~-ws~~P~~v~~~~PYlIa~~-~~~veI~s~~~~----qlvQSI~ 277 (877)
T KOG2063|consen 205 LIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGTLV-WSEVPLSVVVESPYLIALL-DRSVEIRSKLDG----QLVQSIT 277 (877)
T ss_pred eEEEecCCceEEEccCceEEEEecCCcccCCCceE-ecccchhhcccCceEEEEc-cccEEEEeccCH----HHhhccc
Confidence 333456666777888887777775543322 111 1122233333323444433 449999999997 7777774
No 497
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=44.92 E-value=2.2e+02 Score=25.21 Aligned_cols=102 Identities=9% Similarity=0.031 Sum_probs=59.7
Q ss_pred ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe-----EEEEEeCC---CeeEEE--EcCCCEEEEEcCCcEEEEEcCC
Q 021744 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-----CAGVINLG---GEVGCM--ISEGPWIFIGVTNFVKAWNTQT 219 (308)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~-----~~~~~~~~---~~v~~~--~~~~~~l~~~~d~~i~~wd~~~ 219 (308)
...+..+.+.+++..++.+ .+|.+. |....++ ........ ..+..+ .+++..+++|..|.+.... ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CC
Confidence 4568899999888877665 555543 3333443 22333222 224443 3567777788888776653 33
Q ss_pred Ccee-ee---eCCCCCEEEEEEeCC-EEEEEcCCCeEEEE
Q 021744 220 NTDL-SL---SGPVGQVYAMAVGND-LLFAGTQDGAILAW 254 (308)
Q Consensus 220 ~~~~-~~---~~~~~~v~~~~~~~~-~l~~g~~dg~i~iw 254 (308)
++.- .. ..-....+.+.|.++ .....+.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 3332 21 223456889998775 56666778887655
No 498
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=44.31 E-value=3e+02 Score=26.55 Aligned_cols=110 Identities=5% Similarity=-0.091 Sum_probs=61.0
Q ss_pred CceEEecCCCeEEEeecCCCC----CC---CCCcc--cccCCCCCCccccccceeEEe--cCCCe-eeccCCCcEEEEEC
Q 021744 27 GLSTADTRQKVCNYWRAGKCN----RF---PCPYL--HRELPLPPAATANGAAAKRFA--NNTWG-RNNNFNNHSNNYRA 94 (308)
Q Consensus 27 ~~~~s~s~d~~i~~W~~~~~~----~~---~~~~~--~~~~~~~~~~~gh~~~~i~~s--~~g~~-~s~~~d~~i~vwd~ 94 (308)
..|+.+..||.|.+|.+..-. +. ..... ....|......+.+.+.++++ ...++ |.++....|.||-.
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 568889999999999753210 00 00000 000111111122333388888 66667 77777777888766
Q ss_pred CC--CCCcccccceeeeeeeeeeeecCC---c---e-EEeeCCCeEEEEEc
Q 021744 95 GN--SKNSNINNRAVIKTDILCRNWVQG---N---C-MYGEKCKFLHSWTV 136 (308)
Q Consensus 95 ~~--~~~~~~~~~~~~~~~~~~~~~~~~---~---~-~~g~~d~~i~iwd~ 136 (308)
.. .+........+...+-++.|.++. . . ++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 43 222222222344557777776654 1 2 55677888888776
No 499
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=43.56 E-value=2.1e+02 Score=24.49 Aligned_cols=176 Identities=11% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCCceEEecCC-----------CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCC------
Q 021744 25 GGGLSTADTRQ-----------KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFN------ 86 (308)
Q Consensus 25 ~~~~~~s~s~d-----------~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d------ 86 (308)
.+.+.+.|+.+ ..+..||..+. ..........+.....+....-++.. +.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~--------~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~ 134 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN--------SWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDG 134 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCC--------EEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHH
Q ss_pred ---------------------------------CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC----
Q 021744 87 ---------------------------------NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC---- 128 (308)
Q Consensus 87 ---------------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d---- 128 (308)
+.+.+||..+.+....................++.+ +.|+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~ 214 (346)
T TIGR03547 135 YFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL 214 (346)
T ss_pred HHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc
Q ss_pred --CeEEEEEcCCCceeeeEeeCcccc--------eEEEEEeCCCCEEEEeeCC----------------------CcEEE
Q 021744 129 --KFLHSWTVGDGFKLLTQLEGHQKV--------VSGITLPSGSDKLYSGSKD----------------------ETVRV 176 (308)
Q Consensus 129 --~~i~iwd~~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~l~s~s~d----------------------g~v~~ 176 (308)
..+..+++......-..+.....+ ....+...+++..+.|+.+ ..+.+
T Consensus 215 ~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (346)
T TIGR03547 215 RTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV 294 (346)
T ss_pred cchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Q ss_pred EeCCCCeEEEEEe---CCCeeEEEEcCCCEEEEEc
Q 021744 177 WDCASGQCAGVIN---LGGEVGCMISEGPWIFIGV 208 (308)
Q Consensus 177 wd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~ 208 (308)
||.++.+-...-. ......++..++++++.|.
T Consensus 295 yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 295 YALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGG 329 (346)
T ss_pred EEecCCcccccCCCCCCceeeEEEEcCCEEEEEec
No 500
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=43.53 E-value=74 Score=30.48 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=24.6
Q ss_pred CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (308)
Q Consensus 229 ~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~ 259 (308)
...++++.-+|. .++.++.||.|.+|+....
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 345677777787 8889999999999998765
Done!