Query 021745
Match_columns 308
No_of_seqs 124 out of 771
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0938 Adaptor complexes medi 100.0 8.3E-81 1.8E-85 553.2 26.4 304 1-306 115-446 (446)
2 KOG0937 Adaptor complexes medi 100.0 1.4E-72 2.9E-77 521.0 28.8 306 1-307 116-424 (424)
3 PF00928 Adap_comp_sub: Adapto 100.0 2.8E-64 6.1E-69 456.4 30.6 261 39-307 1-262 (262)
4 KOG2740 Clathrin-associated pr 100.0 3.3E-58 7.1E-63 412.4 25.0 289 1-307 118-418 (418)
5 KOG2677 Stoned B synaptic vesi 100.0 1.4E-38 3E-43 302.3 8.7 258 44-307 580-891 (922)
6 KOG2635 Medium subunit of clat 99.9 3.4E-25 7.3E-30 204.1 23.0 231 46-305 270-511 (512)
7 PF10291 muHD: Muniscin C-term 99.2 9E-09 1.9E-13 92.9 24.3 228 53-305 3-256 (257)
8 PF13598 DUF4139: Domain of un 65.0 69 0.0015 29.4 10.2 108 129-245 194-313 (317)
9 PF03504 Chlam_OMP6: Chlamydia 52.3 94 0.002 23.0 7.8 44 189-236 43-86 (95)
10 PF08460 SH3_5: Bacterial SH3 42.2 1.2E+02 0.0025 21.2 6.1 34 263-303 27-60 (65)
11 PF07151 DUF1391: Protein of u 40.7 31 0.00066 22.1 2.3 17 138-154 16-32 (49)
12 KOG0647 mRNA export protein (c 37.2 90 0.002 29.0 5.7 110 60-179 203-313 (347)
13 TIGR01451 B_ant_repeat conserv 35.9 99 0.0021 20.5 4.5 31 171-203 11-41 (53)
14 TIGR02231 conserved hypothetic 31.7 3.5E+02 0.0076 26.9 9.7 68 173-245 443-516 (525)
15 PRK09750 hypothetical protein; 26.3 56 0.0012 22.5 1.9 14 284-297 11-24 (64)
16 PF11609 DUF3248: Protein of u 25.4 1.2E+02 0.0026 20.9 3.4 25 221-247 5-29 (63)
17 PF14400 Transglut_i_TM: Inact 20.1 5.3E+02 0.011 21.7 8.9 54 192-245 33-93 (165)
No 1
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-81 Score=553.24 Aligned_cols=304 Identities=44% Similarity=0.786 Sum_probs=277.7
Q ss_pred CCcccccccChhhHhhcccCcccccccc----c-----CC----CCccccccccccCCCcceeceEEEEEEEeEEEEEcc
Q 021745 1 MDFGFPQFTEAKILSEFIKTDAYRMEVT----Q-----RP----PMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNS 67 (308)
Q Consensus 1 ~D~G~p~~t~~~~L~~~i~~~~~~~~~~----~-----~~----~~~~~~~~~wR~~~~~~~~nEI~vdV~E~l~~~~~~ 67 (308)
|||||||+||+++|+.+|..+++..+-+ + .. .+..++.++||+.|++|++||+|+||+|++|.++++
T Consensus 115 ld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~ 194 (446)
T KOG0938|consen 115 LDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATELRSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSS 194 (446)
T ss_pred HhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccccccccccccccccccccceeccceeEeEehheeeeEEcC
Confidence 6999999999999999999998877622 1 11 134466799999999999999999999999999999
Q ss_pred CCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhccCC-------------CCCceeeecccccceeeccccccCCc
Q 021745 68 NGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRS-------------TKGKAIDLDDIKFHQCVRLARFENDR 134 (308)
Q Consensus 68 ~G~v~~~~V~G~i~~~s~LsG~P~v~l~Ln~~~~~~~~~~~-------------~~~~~~~l~d~~fH~cV~~~~f~~~~ 134 (308)
+|++++++|.|.|.|+++|||||+|+++|||...++..+.. .+...+.|+||.||+||++++|++++
T Consensus 195 ~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh 274 (446)
T KOG0938|consen 195 DGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEH 274 (446)
T ss_pred CCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccccccccccCCCcccCCceEEeeccchheeeccccccccc
Confidence 99999999999999999999999999999999877632110 24456889999999999999999999
Q ss_pred eEEEeCCCCcEEEEEEEecCCCcCcEEEEEEEEECcccEEEEEEEecccCCCcceeeeEEEEecCCCCCCcceEEeccee
Q 021745 135 TISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGS 214 (308)
Q Consensus 135 ~l~F~PPdG~f~Lm~Yr~~~~~~pp~~v~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~v~v~ip~P~~~~~~~~~~~~G~ 214 (308)
.|+|+||||+|+||+||+..+...||.|.|.+++.+.+++||++++++.|+.++-+.+|.++||+|.++..+.+.++.|.
T Consensus 275 ~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~el~r~kie~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gk 354 (446)
T KOG0938|consen 275 IISFVPPDGEFELMKYRVTENINLPFRVTPIVTELGRTKIEYRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGK 354 (446)
T ss_pred eEEEeCCCCceEeEeeeeccCcccceEeeeheecccceeEEEEEEEeccCCchhhhcceEEEecCCCccccceeEEecCc
Confidence 99999999999999999999998888999999988878999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEeceeCCCceEEEEEEEEecCCC-ccccCCCCCCceEEEEEECcccccccEEEEEEEEE-cCCCCccc
Q 021745 215 ARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSIT-AEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIE-KSGYQALP 292 (308)
Q Consensus 215 ~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~-~~~~~~~~~~pi~v~F~ip~~s~SGl~V~~l~v~~-~~~~~~~k 292 (308)
|+|.+++++++|+|+++.|.+|.+|++++++.+.. +...| ..+||+++|++||++.|||.|++++|.+ +++|+..|
T Consensus 355 aky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~W--trPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vk 432 (446)
T KOG0938|consen 355 AKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQW--TRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVK 432 (446)
T ss_pred cccCcccceEEEEecccCCcccceeEEEEEeccCccccccc--cCCCceeEEeeeeecCCceEEEEEEEecccCCCceEE
Confidence 99999999999999999999999999999997654 45566 7899999999999999999999999998 58899999
Q ss_pred ceEEEEEeceEEEE
Q 021745 293 WVRYITMAGEYELR 306 (308)
Q Consensus 293 ~vrY~t~sg~Y~~R 306 (308)
||||+|+||+||+|
T Consensus 433 WVrYitkaGsyEiR 446 (446)
T KOG0938|consen 433 WVRYITKAGSYEIR 446 (446)
T ss_pred EEEEecccceeeeC
Confidence 99999999999998
No 2
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-72 Score=520.98 Aligned_cols=306 Identities=65% Similarity=1.099 Sum_probs=282.5
Q ss_pred CCcccccccChhhHhhcccCccccccccc-CCCCccccccccccCCCcceeceEEEEEEEeEEEEEccCCcEEEEEEEEE
Q 021745 1 MDFGFPQFTEAKILSEFIKTDAYRMEVTQ-RPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGA 79 (308)
Q Consensus 1 ~D~G~p~~t~~~~L~~~i~~~~~~~~~~~-~~~~~~~~~~~wR~~~~~~~~nEI~vdV~E~l~~~~~~~G~v~~~~V~G~ 79 (308)
|||||||.|++++|+++|..+++..+... ++|++.++++.||+.+++|++||+|+||+|++++.++++|.++.++|.|+
T Consensus 116 mDFGypQ~t~s~iL~~yi~~~~~~l~~~~~~~p~avtnavsWrs~gi~~~KnevflDViE~Vs~l~~~~G~vl~s~i~G~ 195 (424)
T KOG0937|consen 116 MDFGYPQTTDSEILKNYITQKANRLQDAQPRPPLAVTNAVSWRSEGIYYGKNEVFLDVIESVSLLYDSNGIVLLSEIVGT 195 (424)
T ss_pred hccCCcccchHHHHHHHhcccccceeecCCCCCcccccceeecccccccccceEEEEhhhhhhHhhhcCCcEEEeeeeeE
Confidence 69999999999999999999977655433 67889999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCeEEEEeccchhhhhccCCCCCceeeecccccceeeccccccCCceEEEeCCCCcEEEEEEEecCCCcCc
Q 021745 80 LKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPL 159 (308)
Q Consensus 80 i~~~s~LsG~P~v~l~Ln~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~~pp 159 (308)
|+|||+|+|||+++|+||+..+.+..+..+.+..+.++|++||+||++++|+.+|.|+|+||||+|+||+||++....|+
T Consensus 196 I~~k~~LsGmPelrl~ln~~~~~~~~~~~~~s~~v~ledi~fh~~v~l~~fd~dr~i~FiPPdGeF~Lm~Y~ls~~vkPl 275 (424)
T KOG0937|consen 196 IKLKCYLSGMPELRLGLNDKVLFDKQGPRSKSKGVELEDIKFHECVRLSRFDNDRTISFIPPDGEFELMRYRLSTHVKPL 275 (424)
T ss_pred EEEEEEcCCCceeeeecCcccccccccccccCcceEeeecccceeechhhccCCceEEecCCCCceEEEEEEecCCCCCe
Confidence 99999999999999999999887766544445688999999999999999999999999999999999999999998999
Q ss_pred EEEEEEEEECcccEEEEEEEecccCCCcceeeeEEEEecCCCCCCcceEEecceeEEEeCCCCEEEEEeceeCCCceEEE
Q 021745 160 IWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYML 239 (308)
Q Consensus 160 ~~v~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l 239 (308)
+.+......++..++|+.++++++|+.+..+++|.|.||+|..++++....+.|+++|.+++++|+|+|++++|+.|.++
T Consensus 276 i~~~~~~~~~~~~ri~i~~K~~~~fk~~~~a~~v~I~iP~P~~a~~~~fk~s~G~~~~~~e~~~l~W~I~~~~gg~e~~~ 355 (424)
T KOG0937|consen 276 IWFYQLIEEHSRSRIEVMVKLREQFKSRSSANNVEICIPVPDDASSPSFKTSLGSAKYDPEKSALRWTIKKFVGGKEYSL 355 (424)
T ss_pred EEeeeeeeeccceeEEEEEechhhcCCccccceEEEEeeCCCccccceEeccCCceeeecccceEEEEeccccCCceEEE
Confidence 88765555566779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCccc-cCCCCCCceEEEEEECcccccccEEEEEEEEE-cCCCCcccceEEEEEeceEEEEe
Q 021745 240 RAEFSLPSITAEE-AAPERKAPIRVKFEIPYFTVSGIQVRYLKIIE-KSGYQALPWVRYITMAGEYELRL 307 (308)
Q Consensus 240 ~~~~~l~~~~~~~-~~~~~~~pi~v~F~ip~~s~SGl~V~~l~v~~-~~~~~~~k~vrY~t~sg~Y~~R~ 307 (308)
++++.+++...++ ++ ...+||+|+|+||++|+||++|+++++.+ +.+|++++||||.|+||.|++|+
T Consensus 356 r~~~~lp~~~~e~~~~-~~~~pi~v~FeIp~~T~SgiqVrylki~ep~~~y~s~~WVRy~T~s~~Y~~r~ 424 (424)
T KOG0937|consen 356 RARMDLPSEEHEEQCT-EGLGPIKVKFEIPYFTVSGIQVRYLKIIEPKSQYQSLPWVRYNTQSGPYEIRV 424 (424)
T ss_pred EEeecCCccccCCCCc-ccCCceEEEEEecccccCCeEEEEEEecccccCCCccceEEEEccCCceEeeC
Confidence 9999998865543 23 48999999999999999999999999998 68899999999999999999995
No 3
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....
Probab=100.00 E-value=2.8e-64 Score=456.36 Aligned_cols=261 Identities=41% Similarity=0.796 Sum_probs=218.3
Q ss_pred cccccCCCcceeceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhccCCCCCceeeecc
Q 021745 39 VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDD 118 (308)
Q Consensus 39 ~~wR~~~~~~~~nEI~vdV~E~l~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~v~l~Ln~~~~~~~~~~~~~~~~~~l~d 118 (308)
+|||+.+++|++|||||||.|+|+++++++|.++.++|.|+|.|+++|+|+|+|+|.||++... ..+++.++|
T Consensus 1 ~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~v~~~~~l~g~p~i~l~l~~~~~~-------~~~~~~l~~ 73 (262)
T PF00928_consen 1 VPWRPSGIKYKKNEIFVDVVEKISAVLDRDGNILSSEVKGSVQCKSFLSGMPEIKLTLNNPLVV-------SKNGIKLDD 73 (262)
T ss_dssp -TTS-STB--SSEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEE-SST-EEEEEESSSCCC-------TSSSBEESE
T ss_pred CCcccCCcccccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeCCCCCeEEEEecCcccc-------ccCceeeec
Confidence 5899999999999999999999999999999999999999999999999999999999998432 124567999
Q ss_pred cccceeeccccccCCceEEEeCCCCcEEEEEEEecCCCcCcEEEEEEEEECcccEEEEEEEecccCCCcceeeeEEEEec
Q 021745 119 IKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELP 198 (308)
Q Consensus 119 ~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~~pp~~v~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~v~v~ip 198 (308)
++||+|||+++|++++.|+|+||||+|+||+||++....+|+.+.|++...+++++++.++++++++....+++|.|+||
T Consensus 74 ~~fH~cV~~~~~~~~~~i~f~PPdg~f~Ll~Yr~~~~~~~P~~i~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~v~I~ip 153 (262)
T PF00928_consen 74 VSFHPCVDLSKFESDRVISFIPPDGEFTLLRYRVSSNSPLPFKITCWVSEKSSGRFEVTIELESNFPNKISLENVVIRIP 153 (262)
T ss_dssp EEEETTEECCCCCSHTEEEE---SEEEEEEEEEEESSS--SEEEEEEEEEETTTEEEEEEEEEE-S-TTSEEEEEEEEEE
T ss_pred eeeccccCccccccccceecCCCCceEEEEEEEccCCCCCCcEEEEEeccCCCceEEEEEEecccCCCCceeceEEEEee
Confidence 99999999999999999999999999999999998888888999999988556799999999999888789999999999
Q ss_pred CCCCCCcceEEecceeEEEeCCCCEEEEEeceeCCCceEEEEEEEEecCCCccccCCCCCCceEEEEEECcccccccEEE
Q 021745 199 VPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVR 278 (308)
Q Consensus 199 ~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~pi~v~F~ip~~s~SGl~V~ 278 (308)
+|+++..+++..+.|+++|+.+++.|+|+|++++++.+.+++|++++......+. ...++||+|+|++|++++||++|+
T Consensus 154 lP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~pi~v~F~~~~~~~Sgl~V~ 232 (262)
T PF00928_consen 154 LPPGTSSPSIESSDGSAEYDEEENALVWKIKKLPGGSESTLSGTLEFSSPSSVPS-DWSFFPISVEFTIPGYTLSGLKVR 232 (262)
T ss_dssp --TTEEEEEEEESSSEEEEETGCTEEEEEEEEEETSEEEEEEEEEEEEEECCSS--S-----EEEEEEESTSETTT-EEE
T ss_pred cCCccccceeeecCceEEEEccCCEEEEEECCccCcccccEEEEEEecCCCcccc-cccceeEEEEEEeCCcccCCCEEE
Confidence 9999889999999999999999999999999999999999999999866544332 126899999999999999999999
Q ss_pred EEEEEEc-CCCCcccceEEEEEeceEEEEe
Q 021745 279 YLKIIEK-SGYQALPWVRYITMAGEYELRL 307 (308)
Q Consensus 279 ~l~v~~~-~~~~~~k~vrY~t~sg~Y~~R~ 307 (308)
+++|.+. .+|+|+|||||+|+||+|+||+
T Consensus 233 ~l~v~~~~~~~~~~k~vky~t~s~~Y~iR~ 262 (262)
T PF00928_consen 233 SLDVVNEDENYKPYKWVKYVTKSGSYEIRT 262 (262)
T ss_dssp EEEEE-SSCGGGSEEEEEEEEEEEEEEE--
T ss_pred EEEeEecCCCCCCcccEEEEEEcCcEEEcC
Confidence 9999883 6789999999999999999996
No 4
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-58 Score=412.39 Aligned_cols=289 Identities=28% Similarity=0.524 Sum_probs=251.2
Q ss_pred CCcccccccChhhHhhcccCccccccc----------ccCCCCccccccccccCCCcceeceEEEEEEEeEEEEEccCCc
Q 021745 1 MDFGFPQFTEAKILSEFIKTDAYRMEV----------TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQ 70 (308)
Q Consensus 1 ~D~G~p~~t~~~~L~~~i~~~~~~~~~----------~~~~~~~~~~~~~wR~~~~~~~~nEI~vdV~E~l~~~~~~~G~ 70 (308)
+|+|||..||+|+|+++|..+..+.+. +..+|+++.+.+|||+.+.+|.+||.||||+|+++|+++++|.
T Consensus 118 iDnGfpl~tE~NiLke~i~pps~l~~~~~svTg~~n~~~~lPtg~~s~VPWR~~~~Ky~nNE~yvdvlEeidai~~k~gs 197 (418)
T KOG2740|consen 118 IDNGFPLVTEPNILKELIPPPSFLSKKFNSVTGNSNVSDTLPTGALSNVPWRTAGVKYTNNEAYVDVLEEIDAIVDKKGS 197 (418)
T ss_pred HHcCCCcccChhHHHhhcCChHHHHHHHhhhhccccccccCCCcccccccccccCcccccchhhhhhhheeheEecCCCC
Confidence 699999999999999999999998842 2367888888899999999999999999999999999999999
Q ss_pred EEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhccCCCCCceeeecccccceeeccccccCCceEEEeCCCCcEEEEEE
Q 021745 71 IVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTY 150 (308)
Q Consensus 71 v~~~~V~G~i~~~s~LsG~P~v~l~Ln~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Y 150 (308)
.+.++|.|.|.|+|+|+|||++.|.|+++. .|+|++|||||++.+|++++.|+|+||||+|+||+|
T Consensus 198 lv~~eI~g~vd~~~qLsgmPdltlsl~np~--------------~L~dvsfHpcVr~krwe~~~~lsFIPPDGkFrLlsy 263 (418)
T KOG2740|consen 198 LVFGEIQGIVDVCSQLSGMPDLTLSLNNPR--------------LLGDVSFHPCVRYKRWESHSVLSFIPPDGKFRLLSY 263 (418)
T ss_pred EEEEEEEEEEEEEEeecCCCceEEEccCcc--------------ccCCcccccceeecccccccceEEcCCCCcEEEEEE
Confidence 999999999999999999999999998874 389999999999999999999999999999999999
Q ss_pred EecCC--CcCcEEEEEEEEECcccEEEEEEEecccCCCcceeeeEEEEecCCCCCCcceEEecceeEEEeCCCCEEEEEe
Q 021745 151 RLSTQ--VKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKI 228 (308)
Q Consensus 151 r~~~~--~~pp~~v~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I 228 (308)
|++.+ ...|..+.++....++..+++++.+...-...-..+.+.|....|+.+.......++|+..++...+.+-|++
T Consensus 264 ~v~~~~~v~~pvyv~~~i~l~~~~~~ri~~tvg~~~~~gK~ie~itVt~~~pn~i~~~~k~~~~g~~~~~~~~k~l~W~~ 343 (418)
T KOG2740|consen 264 RVDAQNQVAIPVYVKNSISLDSNHQGRISLTVGPKKKMGKTIELITVTVQDPNEIAYASKILTHGTFTNSIIMKQLTWTF 343 (418)
T ss_pred EEehhhccccceEEeeeeccCCCceEEEEEeccccccccceeEeEEEEecCccceeeeecccccceeEeecccceeEEEe
Confidence 99765 3567777887776554334444444322111224567788889999998888888999999999999999999
Q ss_pred ceeCCCceEEEEEEEEecCCCccccCCCCCCceEEEEEECcccccccEEEEEEEEEcCCCCcccceEEEEEeceEEEEe
Q 021745 229 KSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRL 307 (308)
Q Consensus 229 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~pi~v~F~ip~~s~SGl~V~~l~v~~~~~~~~~k~vrY~t~sg~Y~~R~ 307 (308)
+++..+.-+.|++.+++....... ..+..++++|.+.+.++||++|+.|++.+ ..|++||||||.|++|.+++|+
T Consensus 344 ~~i~tg~lp~Lkg~~~~e~~~sk~---~~l~t~~Lqykiqg~alsglkVe~Ldm~~-~~~k~yKGvKy~t~agnfqvR~ 418 (418)
T KOG2740|consen 344 GSIATGKLPVLKGTINLEPGFSKK---VDLPTLSLQYKIQGQALSGLKVERLDMYG-EPYKPYKGVKYKTKAGNFQVRL 418 (418)
T ss_pred ecccCCcccccccccccCCCCCcc---ccCcccceeeeeeeeeccceEEEeeeecC-CCCccccceEEEEeeeeEEEeC
Confidence 999888889999999986544332 37899999999999999999999999997 5688999999999999999996
No 5
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-38 Score=302.26 Aligned_cols=258 Identities=26% Similarity=0.485 Sum_probs=215.9
Q ss_pred CCCcceeceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcc-------CCCCCceeee
Q 021745 44 EGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQG-------RSTKGKAIDL 116 (308)
Q Consensus 44 ~~~~~~~nEI~vdV~E~l~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~v~l~Ln~~~~~~~~~-------~~~~~~~~~l 116 (308)
.-..|..+||.|||.++.+++++++|+++...|..+|.|.|||+|+++|.|+|||..+.+++- ....+.||+|
T Consensus 580 ~k~nY~e~EI~v~~~Defsg~V~Keg~~~~~~v~tri~cL~FlsG~~ec~lgLND~~~kg~Eiv~rkDimp~~t~kwI~~ 659 (922)
T KOG2677|consen 580 DKSNYLEEEITVDVRDEFSGIVSKEGQILQHHVLTRIHCLSFLSGLAECRLGLNDILVKGNEIVLRKDIMPTTTTKWIKL 659 (922)
T ss_pred cccccccceeEEEEEeccceeecccchhhhhhhhhhhhhhhhccCCceeEeecchhhhcccceeEeccccccccccceee
Confidence 335799999999999999999999999999999999999999999999999999987654431 1136789999
Q ss_pred cccccceeeccccccCCceEEEeCCCC-cEEEEEEEecCCC-cCcEEEEEEEEECcccEEEEEEEec--c------cCCC
Q 021745 117 DDIKFHQCVRLARFENDRTISFIPPDG-SFDLMTYRLSTQV-KPLIWVEAQIERHSRSRIEIMVKAR--S------QFKE 186 (308)
Q Consensus 117 ~d~~fH~cV~~~~f~~~~~l~F~PPdG-~f~Lm~Yr~~~~~-~pp~~v~~~~~~~~~~~ve~~l~~~--~------~~~~ 186 (308)
.+|.||.||+.+.|+++|+|.|.|+|| .|+|||||+..+. ..||.+...+... |.+||++.-++ + +-..
T Consensus 660 ~~~~FH~cVn~~eF~~srVI~F~PlDaCrFElMRFrt~~~~~~lpftlks~~~V~-Ga~VEvq~~~~mat~~qr~rd~~~ 738 (922)
T KOG2677|consen 660 HECRFHGCVNEDEFHNSRVILFNPLDACRFELMRFRTVFAEKTLPFTLKSATSVN-GAEVEVQSWLRMATGFQRNRDPLT 738 (922)
T ss_pred eeeeeecccchhhccccceEEecCcccceeeeeeeeeecCCCcCceeeeeeeeec-cceeehHHHHHHHhhhhhccCccc
Confidence 999999999999999999999999999 9999999996653 4456776655543 55777764332 2 2234
Q ss_pred cceeeeEEEEecCCCCC--------------------------------CcceEEecceeEEEeCCCCEEEEEeceeCCC
Q 021745 187 RSTATNVEIELPVPADA--------------------------------TNPNVRTSMGSARYAPENDALVWKIKSFPGN 234 (308)
Q Consensus 187 ~~~~~~v~v~ip~P~~~--------------------------------~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~ 234 (308)
...|+|+.|++|+|..| +.+.++++.|+++|++..+.|+|+|++++..
T Consensus 739 ~vpCenI~IrfPVPs~WIk~fr~e~~~g~kSlkaK~nR~a~~gsl~~~~sepvi~vt~G~AKYEhay~siVWrI~RLPdK 818 (922)
T KOG2677|consen 739 QVPCENIMIRFPVPSEWIKNFRRESVLGEKSLKAKVNRGASFGSLSVSGSEPVIRVTLGTAKYEHAYNSIVWRINRLPDK 818 (922)
T ss_pred cCcccceeEeccCcHHHHHHHHHHhhhccchhhhhhcccccccchhhccCCceEEEeecchhhHHhhhhheeecccCCcc
Confidence 56899999999999753 2456899999999999999999999999864
Q ss_pred c-----eEEEEEEEEecCCCccccCCCCCCceEEEEEECcccccccEEEEEEEEEcCCCCcccceEEEEEeceEEEEe
Q 021745 235 K-----EYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRL 307 (308)
Q Consensus 235 ~-----~~~l~~~~~l~~~~~~~~~~~~~~pi~v~F~ip~~s~SGl~V~~l~v~~~~~~~~~k~vrY~t~sg~Y~~R~ 307 (308)
+ .+.|.|.++|.++++.+. +....+.|+|.+|..++|...||+|.|.. ...+.|||+|..+. +|++-+
T Consensus 819 nsa~~hpHcl~c~lELgSd~evPs--~f~p~~~V~FsmP~t~aS~t~VRSisVE~--~~~v~K~V~y~A~Y-~yqv~l 891 (922)
T KOG2677|consen 819 NSASGHPHCLFCHLELGSDREVPS--RFAPHVNVEFSMPTTSASKTSVRSISVED--KTDVRKWVNYSAHY-SYQVAL 891 (922)
T ss_pred ccccCCCeeEEEEEeccccccCch--hhccccceeeeccccccccceeeeeeccc--cccHHHHHhhhhhe-eeeeee
Confidence 3 789999999999988776 36788999999999999999999999975 34699999999854 666543
No 6
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.4e-25 Score=204.09 Aligned_cols=231 Identities=19% Similarity=0.280 Sum_probs=184.1
Q ss_pred CcceeceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhccCCCCCceeeecccccceee
Q 021745 46 IRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCV 125 (308)
Q Consensus 46 ~~~~~nEI~vdV~E~l~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~v~l~Ln~~~~~~~~~~~~~~~~~~l~d~~fH~cV 125 (308)
....+|.|++.+.|+|++.+++||.+.++++.|.+.++....-...+.|.|++.... =.++++||++
T Consensus 270 p~v~~e~v~i~ieEkln~~~~RDGgi~s~E~qG~lsLrI~d~e~~~i~lkl~n~~~~-------------g~q~ktHPNl 336 (512)
T KOG2635|consen 270 PDVPEESVHIVIEEKLNVRLSRDGGIKSGEVQGTLSLRIKDEEYGDIELKLANGRDK-------------GTQLKTHPNL 336 (512)
T ss_pred CCCccceEEEEEeeeEeEEEcccCCccceeeeeeEEEEEccccccceEEEEcCCCCc-------------ceeeeeCCCc
Confidence 344567799999999999999999999999999999999999999999999774321 2479999999
Q ss_pred ccccccCCceEEEeCCCCcEE------EEEEEecCC--CcCcEEEEEEEEECcc-c--EEEEEEEecccCCCcceeeeEE
Q 021745 126 RLARFENDRTISFIPPDGSFD------LMTYRLSTQ--VKPLIWVEAQIERHSR-S--RIEIMVKARSQFKERSTATNVE 194 (308)
Q Consensus 126 ~~~~f~~~~~l~F~PPdG~f~------Lm~Yr~~~~--~~pp~~v~~~~~~~~~-~--~ve~~l~~~~~~~~~~~~~~v~ 194 (308)
|++.|.++..|.+.+|+..|+ |++||.... ...|++++||+++.+. + .+||++...+ .++||.
T Consensus 337 DK~~f~s~s~iglk~~~K~FPvn~~VGvLkWR~~~~des~iPlTincWPSes~~g~dV~iEYe~~~~~------eL~dV~ 410 (512)
T KOG2635|consen 337 DKKVFLSSSLIGLKRPEKPFPVNSDVGVLKWRMVDEDESEIPLTINCWPSESGNGYDVNIEYEAVLEC------ELNDVI 410 (512)
T ss_pred chhhhccccccccccCCCCCCcCCcceEEEEeecccccccCceEEEeccccCCCCeEEEEEEeehhcc------cccceE
Confidence 999999999999999999995 899999764 3667899999998764 3 5677763222 568999
Q ss_pred EEecCCCCCCcceEEecceeEEEeCCCCEEEEEeceeCCCceEEEEEEEEecCCCccccCCCCCCceEEEEEECcccccc
Q 021745 195 IELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSG 274 (308)
Q Consensus 195 v~ip~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~pi~v~F~ip~~s~SG 274 (308)
|.||+|.++ .|++...+|.+.|+..++.+.|.|+.+.. ..+.+.+|..+..+ + ..++|++|.|+.. .+++|
T Consensus 411 i~iPlP~~i-apsv~~~Dge~~~~~~~~~leW~I~~Ia~--N~SGslEFs~~~~~---~--~~fFPl~VsF~s~-~~ftg 481 (512)
T KOG2635|consen 411 ITIPLPANI-APSVGECDGEYRYDERKNVLEWSIGVIAK--NFSGSLEFSCPASD---P--DGFFPLSVSFTSD-TVFTG 481 (512)
T ss_pred EEeeccccc-CCccceecceEEeccccceeEEEeeeecc--CCCCcEEEeecCCC---C--CceeeEEEEEEec-ccccc
Confidence 999999988 88999999999999999999999999933 23555666554432 2 4899999999977 89999
Q ss_pred cEEEEEEEEEcCCCCcccceEEEEEeceEEE
Q 021745 275 IQVRYLKIIEKSGYQALPWVRYITMAGEYEL 305 (308)
Q Consensus 275 l~V~~l~v~~~~~~~~~k~vrY~t~sg~Y~~ 305 (308)
+.|.++.-.+ .+..+.--++-.-.+..|++
T Consensus 482 l~vqkVv~~~-~~~~~~y~~~t~f~~dky~V 511 (512)
T KOG2635|consen 482 LFVQKVVRND-GHAPVRYSVETTFEVDKYEV 511 (512)
T ss_pred eEEEEEEEcC-CCCCceeEEEEEEEeeeeEe
Confidence 9999987654 22222223333334567765
No 7
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans.This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.
Probab=99.22 E-value=9e-09 Score=92.90 Aligned_cols=228 Identities=18% Similarity=0.281 Sum_probs=119.1
Q ss_pred EEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEecC------CCeEEEEeccchhhhhccCCCCCceeeecccccceeec
Q 021745 53 VFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSG------MPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVR 126 (308)
Q Consensus 53 I~vdV~E~l~~~~~~~G~v~~~~V~G~i~~~s~LsG------~P~v~l~Ln~~~~~~~~~~~~~~~~~~l~d~~fH~cV~ 126 (308)
+-..|.|.|||.+. +|.+....|.|+|.+.---.- .+.+.+.|++...+ +.+.-.+..=
T Consensus 3 l~asi~E~VnA~Fk-~g~~~~v~v~GEv~ls~~~~~~~~~~~~~~l~~rl~n~~~l--------------e~i~pN~~~v 67 (257)
T PF10291_consen 3 LNASITETVNAYFK-GGQLSKVKVTGEVALSYPAGISSSLTSPPPLSFRLNNFSRL--------------EKIAPNPQFV 67 (257)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEEE--SSS-----SEEEEEEETGGGE--------------EEEEE-TTTE
T ss_pred eeEEEEEEEEEEEE-CCcEEEEEEEEEEEEecCCChhhcccCCCcEEEEEcCcchh--------------ceeecCHhHe
Confidence 55679999999997 789999999999988643322 34567777665432 2222111111
Q ss_pred cccccCCceEEEeCCC--CcE--EEEEEEecCC----CcCcEEEEEEEEEC-cccEEEEEEEecc-cCCCcceeeeEEEE
Q 021745 127 LARFENDRTISFIPPD--GSF--DLMTYRLSTQ----VKPLIWVEAQIERH-SRSRIEIMVKARS-QFKERSTATNVEIE 196 (308)
Q Consensus 127 ~~~f~~~~~l~F~PPd--G~f--~Lm~Yr~~~~----~~pp~~v~~~~~~~-~~~~ve~~l~~~~-~~~~~~~~~~v~v~ 196 (308)
...-.++....|.++. ... ..|+|++... ..+|+.+.+...-. ....+-+..++.+ .+.....++||.|.
T Consensus 68 ~~~~~~~~~f~~n~~~l~~~~~~~alKYqv~~~~~~~~~~Pl~l~~~Wk~e~~~tsl~l~Y~~Np~~~~~~~~L~nv~~~ 147 (257)
T PF10291_consen 68 SSSSQSDGEFWLNMSALTSHLPKQALKYQVHSDPSNLSSVPLILKPVWKCEPSQTSLILDYKLNPDAFASPVPLENVVFS 147 (257)
T ss_dssp --EEEETTEEEE-TTTTBT-E-EEEEEEEEES--------SEEEEEEEEE-SSEEEEEEEEEE-TTT--E-EEEEEEEEE
T ss_pred ecCCCCCCcEEEehHHhhhhhhhceEEEEEeccccccCCCCeEEEeEEEeCCceEEEEEEEEeChhhccccceeeeEEEE
Confidence 0011122234444332 222 4699999762 34455565544432 3334444444445 44445678999999
Q ss_pred ecCCCC-CCcceEEecceeEEEeCCCCEEEEEeceeC--CCce-EEEEEEEEecCCCccccCCCCCCceEEEEEEC-ccc
Q 021745 197 LPVPAD-ATNPNVRTSMGSARYAPENDALVWKIKSFP--GNKE-YMLRAEFSLPSITAEEAAPERKAPIRVKFEIP-YFT 271 (308)
Q Consensus 197 ip~P~~-~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~--~~~~-~~l~~~~~l~~~~~~~~~~~~~~pi~v~F~ip-~~s 271 (308)
+++... ++++.... .+.|..+++.+.|+|+.+. ++.+ ..|.|+|...... ..-.+|.++|++. +.+
T Consensus 148 v~l~g~~~ts~~skP---~g~~~~e~~ri~Wrl~el~~~~~~~~~kL~ARf~~~~~~------~~p~~v~vkF~~~~~~~ 218 (257)
T PF10291_consen 148 VPLDGGRATSAQSKP---QGTWNKEKNRITWRLPELSLTSEGEGGKLIARFMTSGGP------SRPGGVEVKFEIEGGST 218 (257)
T ss_dssp EEB-SS-EEEEEESS---S--B-SSS-EEEEE-SSEEEETT---EEEEEEEEESS----------SS-EEEEEEE---S-
T ss_pred EEcCCccccccccCC---CccccCCCcEEEEECCcccccCCCCCceEEEEEECCCCC------CCCceEEEEEEEcCCCc
Confidence 999775 33333323 2568899999999999764 3333 6899999875432 1567899999999 889
Q ss_pred ccccEEEEEEEEEc-----CCCCcccceEEEEEeceEEE
Q 021745 272 VSGIQVRYLKIIEK-----SGYQALPWVRYITMAGEYEL 305 (308)
Q Consensus 272 ~SGl~V~~l~v~~~-----~~~~~~k~vrY~t~sg~Y~~ 305 (308)
.||+.|.-+.-.+. .+|+.. -++-...+|.|..
T Consensus 219 ~sg~~i~~~~~~~~~dp~~~~w~~~-~~~r~~~sGkY~~ 256 (257)
T PF10291_consen 219 LSGLGISLVYQDDEEDPPGGGWRLV-LVKRKLVSGKYIA 256 (257)
T ss_dssp SS----EEEEEESSS-TT----EE--EEEEEEEEEEEE-
T ss_pred ccCcEEEEeecccccCCCCCcceEE-EEEEEEeeeEEec
Confidence 99998888822211 122222 3444455899963
No 8
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=65.00 E-value=69 Score=29.42 Aligned_cols=108 Identities=19% Similarity=0.376 Sum_probs=58.1
Q ss_pred cccCCceEEEeCCCCcEEEEEEEecCCCcCcEEEEEEEE---E-C---c---ccEEEEEEEecccCCCcceeeeEEEEec
Q 021745 129 RFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIE---R-H---S---RSRIEIMVKARSQFKERSTATNVEIELP 198 (308)
Q Consensus 129 ~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~~pp~~v~~~~~---~-~---~---~~~ve~~l~~~~~~~~~~~~~~v~v~ip 198 (308)
.|-.+..|.+++|.++|.| .+-.+.. +.+.-... . . + ..+.++++.++...+. .-.|.|.=+
T Consensus 194 ~~vG~~~l~~~~~ge~~~l-~~G~d~~----v~v~r~~~~~~~~~g~~~~~~~~~~~~~itv~N~~~~---~v~v~v~d~ 265 (317)
T PF13598_consen 194 TFVGESRLPHTAPGEEFEL-SFGVDPD----VRVERKLLKKEEERGFFGKSQRRTYEYTITVRNNKDE---PVTVTVEDQ 265 (317)
T ss_pred EEEEeeecCCCCCCCEEEE-EcccCCC----EEEEEEecceecccccccccEEEEEEEEEEEECCCCC---CEEEEEEeC
Confidence 4555667888888888874 3333332 12211110 0 0 1 1245666777665432 235777777
Q ss_pred CCCCCC-cceEEecc-eeEEEeCCCCEEEEEeceeCCCceEEEEEEEEe
Q 021745 199 VPADAT-NPNVRTSM-GSARYAPENDALVWKIKSFPGNKEYMLRAEFSL 245 (308)
Q Consensus 199 ~P~~~~-~~~~~~~~-G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~l 245 (308)
+|-... ..++.... .....+.+.+.+.|++.--+|+ +.+++..+++
T Consensus 266 iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~-~~~l~~~y~v 313 (317)
T PF13598_consen 266 IPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGE-SRTLEFSYEV 313 (317)
T ss_pred CCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCC-EEEEEEEEEE
Confidence 775432 22222211 1235678899999999954554 4566665554
No 9
>PF03504 Chlam_OMP6: Chlamydia cysteine-rich outer membrane protein 6; InterPro: IPR003506 Three cysteine-rich proteins (also believed to be lipoproteins) make up the extracellular matrix of the Chlamydial outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. As these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism. The largest of these is the major outer membrane protein (MOMP), and constitutes around 60% of the total protein for the membrane []. OMP6 is the second largest, with a molecular mass of 58kDa, while the OMP3 protein is ~15kDa []. MOMP is believed to elicit the strongest immune response, and has recently been linked to heart disease through its sequence similarity to a murine heart-muscle specific alpha myosin []. The OMP6 family plays a structural role in the outer membrane during the EB stage of the Chlamydial cell, and different biovars show a small, yet highly significant, change at peptide charge level []. Members of this family include Chlamydia trachomatis, Chlamydia pneumoniae and Chlamydia psittaci.; GO: 0005201 extracellular matrix structural constituent
Probab=52.34 E-value=94 Score=23.00 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=28.6
Q ss_pred eeeeEEEEecCCCCCCcceEEecceeEEEeCCCCEEEEEeceeCCCce
Q 021745 189 TATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKE 236 (308)
Q Consensus 189 ~~~~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~ 236 (308)
.+-||.|.-.||.++. +-.++-.++ -...+.|+|+|+.+-.++.
T Consensus 43 DcvnVviTqqLPce~e---FV~SdPett-p~~D~kLVW~Ig~l~~G~k 86 (95)
T PF03504_consen 43 DCVNVVITQQLPCEVE---FVRSDPETT-PTPDGKLVWKIGRLGQGEK 86 (95)
T ss_pred ceeEEEEeecCCcceE---EEecCCccc-cCCCCEEEEEeccccCCce
Confidence 4668999999998543 322222221 1356789999999876653
No 10
>PF08460 SH3_5: Bacterial SH3 domain; InterPro: IPR013667 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; GO: 0016787 hydrolase activity; PDB: 1R77_B.
Probab=42.22 E-value=1.2e+02 Score=21.21 Aligned_cols=34 Identities=32% Similarity=0.670 Sum_probs=22.3
Q ss_pred EEEEECcccccccEEEEEEEEEcCCCCcccceEEEEEeceE
Q 021745 263 VKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEY 303 (308)
Q Consensus 263 v~F~ip~~s~SGl~V~~l~v~~~~~~~~~k~vrY~t~sg~Y 303 (308)
+-+..+ -|-.|.+-.+...++ +.|++|+..+|.+
T Consensus 27 ~~~~~~----~G~~V~YD~~~~~dG---y~Wisy~~~sG~r 60 (65)
T PF08460_consen 27 VVGTYP----KGQSVNYDQVIKADG---YVWISYISYSGQR 60 (65)
T ss_dssp EEEEE-----TT-EEEEEEEEEETT---EEEEEEE-TT--E
T ss_pred eEEEEC----CCCEEEEEEEEEeCC---EEEEEEECCCCeE
Confidence 345555 788898888876555 8999999988854
No 11
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=40.67 E-value=31 Score=22.12 Aligned_cols=17 Identities=47% Similarity=0.716 Sum_probs=14.3
Q ss_pred EeCCCCcEEEEEEEecC
Q 021745 138 FIPPDGSFDLMTYRLST 154 (308)
Q Consensus 138 F~PPdG~f~Lm~Yr~~~ 154 (308)
|---||.|+.|.|.-+.
T Consensus 16 fpn~dgtftamtytksk 32 (49)
T PF07151_consen 16 FPNQDGTFTAMTYTKSK 32 (49)
T ss_pred eeCCCCcEEEEEEeecc
Confidence 66789999999998654
No 12
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=37.22 E-value=90 Score=28.99 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=68.7
Q ss_pred eEEEEEccCCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhccCCCCCceeeecccccceeec-cccccCCceEEE
Q 021745 60 SVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVR-LARFENDRTISF 138 (308)
Q Consensus 60 ~l~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~v~l~Ln~~~~~~~~~~~~~~~~~~l~d~~fH~cV~-~~~f~~~~~l~F 138 (308)
.|.+..|++|. ....|.|.+.++.-..++|.-.+.|.....-+. . ..+-.-+.++.|||--. +..-.+|.+++|
T Consensus 203 ~va~f~d~~~~-alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-~---~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F 277 (347)
T KOG0647|consen 203 CVACFQDKDGF-ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-V---NDDVYAVNSIAFHPVHGTLVTAGSDGTFSF 277 (347)
T ss_pred EEEEEecCCce-EeeeecceEEEEecCCCCccCceeEEEeccCCC-C---CCceEEecceEeecccceEEEecCCceEEE
Confidence 45566778887 778999999999999999988888866542110 0 01122356789999221 123346788888
Q ss_pred eCCCCcEEEEEEEecCCCcCcEEEEEEEEECcccEEEEEEE
Q 021745 139 IPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVK 179 (308)
Q Consensus 139 ~PPdG~f~Lm~Yr~~~~~~pp~~v~~~~~~~~~~~ve~~l~ 179 (308)
-.-|.+-.|..|..-. -|+.. |.+... |.-+-|-+.
T Consensus 278 WDkdar~kLk~s~~~~---qpItc-c~fn~~-G~ifaYA~g 313 (347)
T KOG0647|consen 278 WDKDARTKLKTSETHP---QPITC-CSFNRN-GSIFAYALG 313 (347)
T ss_pred ecchhhhhhhccCcCC---Cccce-eEecCC-CCEEEEEee
Confidence 8888887777776422 23442 555432 334555443
No 13
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=35.89 E-value=99 Score=20.47 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=24.1
Q ss_pred ccEEEEEEEecccCCCcceeeeEEEEecCCCCC
Q 021745 171 RSRIEIMVKARSQFKERSTATNVEIELPVPADA 203 (308)
Q Consensus 171 ~~~ve~~l~~~~~~~~~~~~~~v~v~ip~P~~~ 203 (308)
+..++|++.++..-.. .+++|.|.=+||.+.
T Consensus 11 Gd~v~Yti~v~N~g~~--~a~~v~v~D~lP~g~ 41 (53)
T TIGR01451 11 GDTITYTITVTNNGNV--PATNVVVTDILPSGT 41 (53)
T ss_pred CCEEEEEEEEEECCCC--ceEeEEEEEcCCCCC
Confidence 4589999998765433 578999999999864
No 14
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.73 E-value=3.5e+02 Score=26.91 Aligned_cols=68 Identities=24% Similarity=0.421 Sum_probs=34.7
Q ss_pred EEEEEEEecccCCCcceeeeEEEEecCCCCC-CcceEE--ecceeEEEe---CCCCEEEEEeceeCCCceEEEEEEEEe
Q 021745 173 RIEIMVKARSQFKERSTATNVEIELPVPADA-TNPNVR--TSMGSARYA---PENDALVWKIKSFPGNKEYMLRAEFSL 245 (308)
Q Consensus 173 ~ve~~l~~~~~~~~~~~~~~v~v~ip~P~~~-~~~~~~--~~~G~~~~~---~~~~~l~W~I~~~~~~~~~~l~~~~~l 245 (308)
...+++.++...+. ...|.|.=++|-.. ...++. ...+ ..++ ...+.+.|++.--+|++ ..++..+++
T Consensus 443 ~~~~~i~v~N~~~~---~v~v~v~d~~PvS~d~~i~V~~~~~~~-~~~~~~~~~~G~~~W~l~L~pg~~-~~l~~~y~v 516 (525)
T TIGR02231 443 EYAYRITLKNLRKE---PERVQIEEQLPVSENEDIKVKLLSPTT-PGYDEEDKKDGILEWKLTLKPGEK-RDLKFKFKV 516 (525)
T ss_pred EEEEEEEEEcCCCC---ceEEEEEeeccCCCCCeeEEEEecCCC-ccccccccCCCeEEEEEEECCCCe-EEEEEEEEE
Confidence 45666666654332 23566666666422 122222 2222 2222 23589999999555543 455554444
No 15
>PRK09750 hypothetical protein; Provisional
Probab=26.25 E-value=56 Score=22.47 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=11.3
Q ss_pred EcCCCCcccceEEE
Q 021745 284 EKSGYQALPWVRYI 297 (308)
Q Consensus 284 ~~~~~~~~k~vrY~ 297 (308)
++++..|.+|+||.
T Consensus 11 ~KpGg~P~~W~r~s 24 (64)
T PRK09750 11 EKEGGTPTNWTRYS 24 (64)
T ss_pred ECCCCCccceeEec
Confidence 35677899999996
No 16
>PF11609 DUF3248: Protein of unknown function (DUF3248); InterPro: IPR021650 This family of proteins is thought to be the product of the gene TT1592 from Thermus thermophilus however this cannot be confirmed. Currently there is no known function. ; PDB: 2E6X_A.
Probab=25.40 E-value=1.2e+02 Score=20.91 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=14.5
Q ss_pred CCEEEEEeceeCCCceEEEEEEEEecC
Q 021745 221 NDALVWKIKSFPGNKEYMLRAEFSLPS 247 (308)
Q Consensus 221 ~~~l~W~I~~~~~~~~~~l~~~~~l~~ 247 (308)
.+.++|+|++-..... +-.++-+.+
T Consensus 5 g~~LvWRiGk~e~e~~--vvVRvG~As 29 (63)
T PF11609_consen 5 GQHLVWRIGKAEAEEV--VVVRVGLAS 29 (63)
T ss_dssp T--EEEEEEE-TTSSS--EEEEEEEGG
T ss_pred cceeEEEeccccccCe--EEEEEeccc
Confidence 4679999998776665 344444444
No 17
>PF14400 Transglut_i_TM: Inactive transglutaminase fused to 7 transmembrane helices
Probab=20.10 E-value=5.3e+02 Score=21.66 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=34.5
Q ss_pred eEEEEecCCCCCCcceE------Eecce-eEEEeCCCCEEEEEeceeCCCceEEEEEEEEe
Q 021745 192 NVEIELPVPADATNPNV------RTSMG-SARYAPENDALVWKIKSFPGNKEYMLRAEFSL 245 (308)
Q Consensus 192 ~v~v~ip~P~~~~~~~~------~~~~G-~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~l 245 (308)
-|+|++.+|..-..-.+ +..-| +..-+..++..+|+|....|.+..-.+..+..
T Consensus 33 pvkvsl~lP~~~pgf~il~E~~~SpGYGls~~~~~~~RrA~WS~R~A~G~QtLYYr~~~~~ 93 (165)
T PF14400_consen 33 PVKVSLALPDTQPGFTILDENFASPGYGLSIVDDDGNRRAEWSIRRASGPQTLYYRVQLLP 93 (165)
T ss_pred CEEEEEcCCCCCCCeEEEccccccCCCCeEEEecCCCcEEEEecccCCCceEEEEEEEEEE
Confidence 57789989875332221 22333 33334468899999999988776556666643
Done!