BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021746
MAANALTRQLSSTSTLWPPLKKPTFSKPRFAKPTPVSAFAMASFTTTQVAPAAIVGGGRV
GTALKEMGKGQDLLVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGM
IEPWLESKGLKDANQVLAYFAVSKLGERPIDGKTDTNPEGLTAAYGKWASVVAERLSVGG
LSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAAA
AEKGITFDPAMEDRLCAYSRAVANFPTAVKEFKWRNGWFYSLSEKASAEGKPDPCPLHTA
WLKEIKVV

High Scoring Gene Products

Symbol, full name Information P value
AT1G16080 protein from Arabidopsis thaliana 8.2e-115

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021746
        (308 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2200517 - symbol:AT1G16080 species:3702 "Arabi...  1132  8.2e-115  1


>TAIR|locus:2200517 [details] [associations]
            symbol:AT1G16080 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0048046 "apoplast"
            evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009965
            "leaf morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
            process" evidence=RCA] [GO:0030154 "cell differentiation"
            evidence=RCA] InterPro:IPR013328 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0050662
            Gene3D:1.10.1040.10 GO:GO:0048046 GO:GO:0009941 GO:GO:0016616
            EMBL:AC010924 EMBL:AF332460 EMBL:AY072208 IPI:IPI00547316
            PIR:F86295 RefSeq:NP_563991.1 UniGene:At.20312 UniGene:At.67074
            ProteinModelPortal:Q9S9M7 STRING:Q9S9M7 PRIDE:Q9S9M7 ProMEX:Q9S9M7
            EnsemblPlants:AT1G16080.1 GeneID:838178 KEGG:ath:AT1G16080
            TAIR:At1g16080 HOGENOM:HOG000265126 InParanoid:Q9S9M7 OMA:HTAWLKE
            PhylomeDB:Q9S9M7 ProtClustDB:CLSN2687823 ArrayExpress:Q9S9M7
            Genevestigator:Q9S9M7 Uniprot:Q9S9M7
        Length = 313

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 214/287 (74%), Positives = 239/287 (83%)

Query:    22 KPTFSKPRFAKPTPVSAFAMASFTTTQVAPAAIVGGGRVGTALKEMGKGQDLLVKRGELV 81
             KP+ S+ RFA P  ++A + A  T  ++APA IVGGGRVG AL+EMG G+DLLVKRGE V
Sbjct:    29 KPSVSRARFAVPMAMAAASAA--TAKKLAPAVIVGGGRVGRALQEMGNGEDLLVKRGEAV 86

Query:    82 PLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMIEPWLESKGLKDANQVLAYFA 141
             P+DFEGPI VCTRNDDL+AVLEA P+SRW DLVFFQNGM+EPW ESKGL D +QVLAYFA
Sbjct:    87 PVDFEGPILVCTRNDDLDAVLEATPQSRWKDLVFFQNGMMEPWFESKGLGDTDQVLAYFA 146

Query:   142 VSKLGERPIDGKTDTNPEGLTAAYGKWASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIW 201
             VSKLGE P+DGKTDTNPEGLTAAYGKWAS +A RL  GGLSCKVLDKEAFQKQMLEKLIW
Sbjct:   147 VSKLGEPPVDGKTDTNPEGLTAAYGKWASEIAARLQSGGLSCKVLDKEAFQKQMLEKLIW 206

Query:   202 ISAFMLVGARHTGATVGVVEKEYRSEVSXXXXXXXXXXXXXKGITFDPAMEDRLCAYSRA 261
             I AFMLVGARH GA+VG VEKEYR EVS             KG+TF+  M +RLCAYSRA
Sbjct:   207 ICAFMLVGARHPGASVGTVEKEYRDEVSRLIQELAAAAAAEKGLTFEENMVERLCAYSRA 266

Query:   262 VANFPTAVKEFKWRNGWFYSLSEKASAEGKPDPCPLHTAWLKEIKVV 308
             V++FPTAVKEFKWRNGWFYSLSEKA AEG+PDPCPLHT WLKE+KV+
Sbjct:   267 VSHFPTAVKEFKWRNGWFYSLSEKAIAEGQPDPCPLHTEWLKELKVI 313


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      308       295   0.00092  115 3  11 22  0.40    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  217 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.34u 0.09s 22.43t   Elapsed:  00:00:02
  Total cpu time:  22.34u 0.09s 22.43t   Elapsed:  00:00:02
  Start:  Fri May 10 10:01:54 2013   End:  Fri May 10 10:01:56 2013

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