BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021746
(308 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=DED1 PE=3 SV=1
Length = 688
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 49 VAPAAIVGGGRVGTALKEMGKGQDLLVKR-GELVPLDFEGPIFVCT 93
V P + GG +G+ L++M +G DLLV G LV L G I +C
Sbjct: 311 VRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCN 356
>sp|A4RHF1|DED1_MAGO7 ATP-dependent RNA helicase DED1 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=DED1 PE=3 SV=2
Length = 671
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 49 VAPAAIVGGGRVGTALKEMGKGQDLLVKR-GELVPLDFEGPIFVCT 93
V P + GG +G+ L+++ +G DLLV G LV L G I +C
Sbjct: 303 VRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCN 348
>sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides immitis (strain RS)
GN=DED1 PE=3 SV=2
Length = 665
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 49 VAPAAIVGGGRVGTALKEMGKGQDLLVKR-GELVPLDFEGPIFVCT 93
V P + GG +G+ L+++ +G DLLV G LV L G I +C
Sbjct: 297 VRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCN 342
>sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ded-1 PE=3 SV=1
Length = 688
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 49 VAPAAIVGGGRVGTALKEMGKGQDLLVKR-GELVPLDFEGPIFVCT 93
V P + GG +G+ L+++ +G DLLV G LV L G I +C
Sbjct: 308 VRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCN 353
>sp|A7IXI8|Y663R_PBCVN Putative transcription factor B663R OS=Paramecium bursaria
Chlorella virus NY2A GN=B663R PE=3 SV=1
Length = 360
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 89 IFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMIEPWLESKGLKDANQVLAYFAVSKLGE- 147
IF CT +E + S +DLV + G+ +P++E+ K++N+ +AY ++ L E
Sbjct: 150 IFTCTCGGQMEVWI----TSTQSDLVCNECGLTQPYIETYTGKESNEGMAYKRINHLAEC 205
Query: 148 -RPIDGKTDTN 157
+ GK TN
Sbjct: 206 LNALQGKEGTN 216
>sp|A5FWI3|ARLY_ACICJ Argininosuccinate lyase OS=Acidiphilium cryptum (strain JF-5)
GN=argH PE=3 SV=1
Length = 471
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 212 HTG--ATVGVVEKEYRSEVSALIAELALAAAAEKGITFDPAMED 253
H G A +G++ E + + A +AE+A A AE TFDPA+ED
Sbjct: 54 HAGMLAAMGIISAEDEAAIRAGLAEIA-EAIAEGSFTFDPALED 96
>sp|Q9AF21|PSLS_XANP2 Phosphosulfolactate synthase OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=xecG PE=3 SV=2
Length = 303
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 193 KQMLEKLIWISAFMLVGARHTGATVGVVEK--EYRSEVSALIAEL 235
+Q L+ L W S+F++V AR +G +G+ +K E RS IA L
Sbjct: 168 EQALDDLKWGSSFVIVEARESGRGIGIYDKTGELRSSFLEEIANL 212
>sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1
Length = 678
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 49 VAPAAIVGGGRVGTALKEMGKGQDLLVKR-GELVPLDFEGPI 89
V P + GG +G+ L++M +G DLLV G LV L G I
Sbjct: 300 VRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRI 341
>sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain
B05.10) GN=ded1 PE=3 SV=1
Length = 683
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 49 VAPAAIVGGGRVGTALKEMGKGQDLLVKR-GELVPLDFEGPI 89
V P + GG +G+ L++M +G DLLV G LV L G I
Sbjct: 300 VRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRI 341
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,667,617
Number of Sequences: 539616
Number of extensions: 4638166
Number of successful extensions: 12770
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 12768
Number of HSP's gapped (non-prelim): 19
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)