Query 021746
Match_columns 308
No_of_seqs 182 out of 269
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05708 2-dehydropantoate 2-r 100.0 1.7E-39 3.6E-44 306.7 21.0 243 50-307 3-295 (305)
2 COG1893 ApbA Ketopantoate redu 100.0 2.4E-39 5.1E-44 306.0 21.7 245 50-307 1-298 (307)
3 PRK06249 2-dehydropantoate 2-r 100.0 2.8E-38 6E-43 299.0 23.2 247 48-307 4-307 (313)
4 PRK12921 2-dehydropantoate 2-r 100.0 8.2E-33 1.8E-37 259.0 23.1 244 50-307 1-299 (305)
5 PRK06522 2-dehydropantoate 2-r 100.0 3.2E-32 6.9E-37 254.4 23.8 243 50-307 1-296 (304)
6 TIGR00745 apbA_panE 2-dehydrop 100.0 6.4E-32 1.4E-36 250.9 20.1 235 59-307 1-289 (293)
7 PRK08229 2-dehydropantoate 2-r 100.0 8.8E-27 1.9E-31 222.0 22.9 239 50-306 3-314 (341)
8 PF08546 ApbA_C: Ketopantoate 99.9 2E-22 4.4E-27 166.0 9.6 111 190-307 1-123 (125)
9 PRK14620 NAD(P)H-dependent gly 99.9 9.1E-21 2E-25 180.1 18.4 236 50-306 1-312 (326)
10 PRK12439 NAD(P)H-dependent gly 99.5 2E-12 4.3E-17 124.2 18.4 237 47-306 5-315 (341)
11 PRK00094 gpsA NAD(P)H-dependen 99.5 1.1E-12 2.5E-17 123.7 15.2 237 50-306 2-310 (325)
12 PRK02318 mannitol-1-phosphate 99.3 2.3E-12 4.9E-17 125.6 3.5 203 50-263 1-281 (381)
13 PF02558 ApbA: Ketopantoate re 99.2 3E-12 6.6E-17 108.0 3.1 77 52-128 1-113 (151)
14 PRK14618 NAD(P)H-dependent gly 99.2 6.3E-10 1.4E-14 106.0 14.8 185 49-248 4-232 (328)
15 PRK14619 NAD(P)H-dependent gly 98.9 3.8E-08 8.2E-13 93.2 15.5 239 47-306 2-286 (308)
16 PTZ00431 pyrroline carboxylate 98.1 7.7E-05 1.7E-09 69.0 13.0 163 48-246 2-189 (260)
17 PRK11880 pyrroline-5-carboxyla 97.6 0.00017 3.8E-09 66.4 6.7 78 50-127 3-104 (267)
18 TIGR01915 npdG NADPH-dependent 97.5 0.00012 2.6E-09 65.9 5.4 73 50-122 1-106 (219)
19 PRK07680 late competence prote 97.3 0.00054 1.2E-08 63.7 6.1 78 50-127 1-106 (273)
20 PRK06928 pyrroline-5-carboxyla 97.1 0.0012 2.7E-08 61.6 6.7 79 50-128 2-109 (277)
21 PRK07679 pyrroline-5-carboxyla 96.9 0.0017 3.6E-08 60.6 6.1 80 48-127 2-109 (279)
22 COG0345 ProC Pyrroline-5-carbo 96.9 0.042 9.2E-07 51.4 15.3 157 50-244 2-191 (266)
23 PRK12491 pyrroline-5-carboxyla 96.8 0.066 1.4E-06 50.0 15.8 161 50-246 3-196 (272)
24 PF03807 F420_oxidored: NADP o 96.8 0.0011 2.5E-08 51.2 3.1 69 51-119 1-96 (96)
25 COG0240 GpsA Glycerol-3-phosph 96.7 0.088 1.9E-06 50.6 16.2 236 50-306 2-309 (329)
26 PF10727 Rossmann-like: Rossma 96.7 0.001 2.2E-08 55.4 2.4 74 48-121 9-107 (127)
27 PRK06130 3-hydroxybutyryl-CoA 96.5 0.073 1.6E-06 50.2 13.6 78 49-126 4-124 (311)
28 PRK11559 garR tartronate semia 96.4 0.085 1.8E-06 49.3 13.8 219 50-305 3-266 (296)
29 PRK12490 6-phosphogluconate de 96.4 0.2 4.3E-06 47.2 16.0 72 50-121 1-98 (299)
30 PLN02688 pyrroline-5-carboxyla 96.3 0.014 3.1E-07 53.6 7.6 77 50-126 1-104 (266)
31 PRK06476 pyrroline-5-carboxyla 96.2 0.16 3.5E-06 46.6 14.2 78 50-127 1-103 (258)
32 TIGR03376 glycerol3P_DH glycer 96.2 0.3 6.6E-06 47.3 16.3 176 51-245 1-245 (342)
33 TIGR03026 NDP-sugDHase nucleot 96.0 0.61 1.3E-05 45.9 18.1 29 50-78 1-32 (411)
34 PTZ00345 glycerol-3-phosphate 96.0 0.16 3.5E-06 49.6 13.7 178 48-244 10-253 (365)
35 PF01210 NAD_Gly3P_dh_N: NAD-d 96.0 0.011 2.5E-07 50.4 5.1 70 51-120 1-106 (157)
36 PRK15059 tartronate semialdehy 96.0 0.19 4.1E-06 47.4 13.7 72 50-121 1-96 (292)
37 PLN02256 arogenate dehydrogena 95.8 0.018 3.9E-07 54.8 6.0 73 46-118 33-128 (304)
38 COG0287 TyrA Prephenate dehydr 95.6 0.36 7.8E-06 45.5 13.8 162 49-212 3-197 (279)
39 PLN02712 arogenate dehydrogena 95.5 0.022 4.8E-07 59.8 5.7 77 31-107 351-447 (667)
40 COG2085 Predicted dinucleotide 95.4 0.019 4.2E-07 51.7 4.4 72 49-120 1-96 (211)
41 PLN02712 arogenate dehydrogena 95.4 0.04 8.6E-07 57.9 7.3 59 48-106 51-129 (667)
42 PRK07417 arogenate dehydrogena 95.2 0.017 3.6E-07 54.0 3.4 74 50-123 1-96 (279)
43 PRK15461 NADH-dependent gamma- 95.1 0.73 1.6E-05 43.3 14.3 55 50-104 2-77 (296)
44 PRK06444 prephenate dehydrogen 95.1 0.032 6.9E-07 49.9 4.7 50 50-107 1-53 (197)
45 TIGR00872 gnd_rel 6-phosphoglu 94.8 0.045 9.8E-07 51.6 5.1 72 50-121 1-97 (298)
46 PRK07634 pyrroline-5-carboxyla 94.5 0.064 1.4E-06 48.6 5.2 79 49-127 4-109 (245)
47 PRK08507 prephenate dehydrogen 94.4 0.052 1.1E-06 50.4 4.6 58 50-107 1-80 (275)
48 PRK05808 3-hydroxybutyryl-CoA 94.4 0.37 8.1E-06 44.8 10.2 78 49-126 3-127 (282)
49 PRK05479 ketol-acid reductoiso 94.2 0.3 6.6E-06 47.1 9.3 77 49-125 17-115 (330)
50 PRK11199 tyrA bifunctional cho 94.2 0.094 2E-06 51.2 6.0 73 48-121 97-177 (374)
51 PRK08655 prephenate dehydrogen 93.6 0.1 2.3E-06 52.0 5.1 69 50-118 1-93 (437)
52 COG0569 TrkA K+ transport syst 92.8 0.27 5.9E-06 44.6 6.2 72 50-121 1-105 (225)
53 COG2084 MmsB 3-hydroxyisobutyr 92.6 9.6 0.00021 36.1 16.8 72 50-121 1-98 (286)
54 PRK07502 cyclohexadienyl dehyd 92.3 0.21 4.4E-06 47.2 4.9 72 50-121 7-103 (307)
55 PRK06545 prephenate dehydrogen 92.2 0.24 5.2E-06 48.0 5.4 72 50-121 1-98 (359)
56 PRK09599 6-phosphogluconate de 92.2 0.27 5.8E-06 46.3 5.5 72 50-121 1-98 (301)
57 PRK11064 wecC UDP-N-acetyl-D-m 92.0 0.16 3.4E-06 50.3 3.8 31 49-79 3-36 (415)
58 PRK08818 prephenate dehydrogen 90.9 0.46 1E-05 46.5 5.8 58 50-107 5-73 (370)
59 TIGR01692 HIBADH 3-hydroxyisob 90.9 9 0.00019 35.7 14.3 68 54-121 1-93 (288)
60 PRK06035 3-hydroxyacyl-CoA deh 90.8 2.9 6.3E-05 39.0 10.9 77 50-126 4-130 (291)
61 TIGR00465 ilvC ketol-acid redu 89.8 1.1 2.5E-05 42.7 7.3 77 49-125 3-101 (314)
62 PF00070 Pyr_redox: Pyridine n 89.0 0.54 1.2E-05 35.1 3.6 31 51-81 1-34 (80)
63 PF10100 DUF2338: Uncharacteri 87.7 32 0.00068 34.3 18.1 247 50-304 2-388 (429)
64 KOG2380 Prephenate dehydrogena 87.2 3 6.5E-05 40.6 8.2 71 50-120 53-145 (480)
65 TIGR00112 proC pyrroline-5-car 84.7 22 0.00048 32.4 12.5 42 86-127 44-87 (245)
66 PRK08293 3-hydroxybutyryl-CoA 84.5 0.94 2E-05 42.3 3.4 31 49-79 3-36 (287)
67 PRK06129 3-hydroxyacyl-CoA deh 83.6 0.97 2.1E-05 42.7 3.1 30 50-79 3-35 (308)
68 PRK06753 hypothetical protein; 83.4 1.2 2.5E-05 42.6 3.6 31 50-80 1-34 (373)
69 PRK07530 3-hydroxybutyryl-CoA 83.2 1.2 2.7E-05 41.5 3.6 30 49-78 4-36 (292)
70 PRK00711 D-amino acid dehydrog 82.8 1.2 2.7E-05 43.1 3.5 30 50-79 1-33 (416)
71 COG0654 UbiH 2-polyprenyl-6-me 82.2 1.4 3.1E-05 42.7 3.7 30 49-78 2-34 (387)
72 PF02737 3HCDH_N: 3-hydroxyacy 82.1 1.3 2.9E-05 38.6 3.2 29 51-79 1-32 (180)
73 PF03446 NAD_binding_2: NAD bi 81.9 1.5 3.2E-05 37.5 3.3 73 49-121 1-97 (163)
74 PLN00093 geranylgeranyl diphos 81.6 3.2 6.9E-05 41.6 6.0 33 47-79 37-72 (450)
75 COG2910 Putative NADH-flavin r 81.2 1.5 3.3E-05 39.1 3.2 67 50-120 1-73 (211)
76 PF00056 Ldh_1_N: lactate/mala 80.8 1.1 2.5E-05 37.5 2.2 18 50-67 1-19 (141)
77 PRK12409 D-amino acid dehydrog 80.6 1.7 3.6E-05 42.3 3.5 29 51-79 3-34 (410)
78 cd05292 LDH_2 A subgroup of L- 80.2 1.7 3.7E-05 41.2 3.4 31 50-80 1-36 (308)
79 PLN02858 fructose-bisphosphate 79.3 24 0.00053 40.5 12.6 54 49-102 324-398 (1378)
80 PRK14806 bifunctional cyclohex 79.2 2.5 5.3E-05 44.8 4.5 72 50-121 4-100 (735)
81 PF03721 UDPG_MGDP_dh_N: UDP-g 79.2 1.5 3.3E-05 38.5 2.5 29 50-78 1-32 (185)
82 PRK07538 hypothetical protein; 78.6 2.2 4.8E-05 41.6 3.7 31 50-80 1-34 (413)
83 PRK07236 hypothetical protein; 78.1 2.6 5.6E-05 40.7 4.0 31 49-79 6-39 (386)
84 PRK07066 3-hydroxybutyryl-CoA 78.0 2.4 5.2E-05 40.7 3.7 31 48-78 6-39 (321)
85 PLN02353 probable UDP-glucose 78.0 2.2 4.7E-05 43.2 3.6 31 49-79 1-36 (473)
86 KOG2304 3-hydroxyacyl-CoA dehy 77.8 1.9 4.1E-05 39.8 2.7 40 37-80 3-45 (298)
87 PRK07588 hypothetical protein; 77.8 2.4 5.2E-05 40.9 3.7 31 50-80 1-34 (391)
88 PRK06183 mhpA 3-(3-hydroxyphen 76.9 3.3 7.1E-05 42.1 4.5 32 48-79 9-43 (538)
89 PRK06126 hypothetical protein; 76.8 3 6.6E-05 42.3 4.3 32 48-79 6-40 (545)
90 PRK07531 bifunctional 3-hydrox 76.2 2.5 5.4E-05 42.8 3.4 30 49-78 4-36 (495)
91 PRK09496 trkA potassium transp 75.5 2.7 6E-05 41.3 3.4 30 50-79 1-33 (453)
92 PRK07364 2-octaprenyl-6-methox 75.4 3.6 7.9E-05 39.8 4.2 32 49-80 18-52 (415)
93 PF01494 FAD_binding_3: FAD bi 75.2 3 6.4E-05 38.7 3.4 32 50-81 2-36 (356)
94 PRK07494 2-octaprenyl-6-methox 75.2 3.8 8.3E-05 39.3 4.3 31 50-80 8-41 (388)
95 PLN02858 fructose-bisphosphate 74.9 1.1E+02 0.0024 35.3 16.2 53 50-102 5-78 (1378)
96 PRK08163 salicylate hydroxylas 74.6 3.3 7.2E-05 39.8 3.7 31 50-80 5-38 (396)
97 PRK15469 ghrA bifunctional gly 74.1 25 0.00055 33.5 9.5 63 49-121 136-201 (312)
98 cd01075 NAD_bind_Leu_Phe_Val_D 74.0 3.6 7.8E-05 36.6 3.5 30 48-77 27-59 (200)
99 PRK05086 malate dehydrogenase; 73.7 3.3 7.2E-05 39.4 3.4 66 50-121 1-80 (312)
100 PRK09260 3-hydroxybutyryl-CoA 73.4 3 6.6E-05 38.8 3.0 29 50-78 2-33 (288)
101 PRK15057 UDP-glucose 6-dehydro 73.4 2.6 5.7E-05 41.5 2.7 30 50-79 1-32 (388)
102 PRK07819 3-hydroxybutyryl-CoA 73.2 4 8.6E-05 38.3 3.7 30 50-79 6-38 (286)
103 PRK06847 hypothetical protein; 73.0 4.3 9.3E-05 38.7 4.0 32 49-80 4-38 (375)
104 PRK08132 FAD-dependent oxidore 72.9 5.2 0.00011 40.7 4.8 32 49-80 23-57 (547)
105 PRK12480 D-lactate dehydrogena 72.7 3.6 7.7E-05 39.6 3.3 62 48-121 145-209 (330)
106 PLN02657 3,8-divinyl protochlo 72.3 6.6 0.00014 38.4 5.2 32 48-79 59-94 (390)
107 PRK06223 malate dehydrogenase; 71.9 4.3 9.3E-05 38.1 3.7 32 49-80 2-37 (307)
108 PRK05732 2-octaprenyl-6-methox 71.2 4.6 0.0001 38.7 3.8 30 49-78 3-38 (395)
109 COG1748 LYS9 Saccharopine dehy 70.6 4.4 9.5E-05 40.0 3.5 30 49-78 1-34 (389)
110 PRK06718 precorrin-2 dehydroge 70.6 5.1 0.00011 35.7 3.6 59 48-106 9-91 (202)
111 PRK08773 2-octaprenyl-3-methyl 70.6 5.2 0.00011 38.6 4.0 32 48-79 5-39 (392)
112 PRK08013 oxidoreductase; Provi 70.1 5.3 0.00011 38.8 4.0 30 50-79 4-36 (400)
113 TIGR03219 salicylate_mono sali 70.0 5 0.00011 39.1 3.8 32 50-81 1-36 (414)
114 PF01113 DapB_N: Dihydrodipico 70.0 3.3 7.1E-05 33.8 2.1 30 50-79 1-36 (124)
115 PRK06719 precorrin-2 dehydroge 69.8 5.4 0.00012 34.1 3.5 60 48-107 12-92 (157)
116 PRK06617 2-octaprenyl-6-methox 69.7 5 0.00011 38.6 3.7 29 50-78 2-33 (374)
117 TIGR02354 thiF_fam2 thiamine b 69.5 5.6 0.00012 35.4 3.7 30 49-78 21-54 (200)
118 PLN02172 flavin-containing mon 69.0 6.6 0.00014 39.5 4.4 32 49-80 10-44 (461)
119 PLN02545 3-hydroxybutyryl-CoA 68.7 5.5 0.00012 37.2 3.6 30 49-78 4-36 (295)
120 PRK07045 putative monooxygenas 68.7 5.8 0.00012 38.2 3.9 34 48-81 4-40 (388)
121 PF13241 NAD_binding_7: Putati 68.4 8.5 0.00018 30.2 4.1 56 49-104 7-79 (103)
122 PRK08849 2-octaprenyl-3-methyl 68.1 6.1 0.00013 38.1 3.9 29 50-78 4-35 (384)
123 TIGR02028 ChlP geranylgeranyl 68.0 6.1 0.00013 38.6 3.9 31 50-80 1-34 (398)
124 COG1004 Ugd Predicted UDP-gluc 67.5 4.8 0.0001 39.8 3.0 30 50-79 1-33 (414)
125 PF00899 ThiF: ThiF family; I 67.2 4 8.6E-05 33.5 2.1 29 50-78 3-35 (135)
126 PRK08020 ubiF 2-octaprenyl-3-m 67.0 6.6 0.00014 37.7 3.9 31 49-79 5-38 (391)
127 PRK09126 hypothetical protein; 66.9 6.2 0.00013 37.9 3.7 30 50-79 4-36 (392)
128 PRK05868 hypothetical protein; 66.8 6.7 0.00015 37.9 3.9 31 50-80 2-35 (372)
129 PLN00016 RNA-binding protein; 66.6 6.4 0.00014 38.0 3.7 33 48-80 51-91 (378)
130 PRK06996 hypothetical protein; 66.5 6.7 0.00015 38.1 3.9 37 40-79 5-48 (398)
131 TIGR01505 tartro_sem_red 2-hyd 66.2 6 0.00013 36.8 3.3 52 51-102 1-73 (291)
132 PF02826 2-Hacid_dh_C: D-isome 66.1 6.2 0.00013 34.1 3.2 54 48-104 35-91 (178)
133 COG0644 FixC Dehydrogenases (f 66.0 6.3 0.00014 38.4 3.6 31 49-79 3-36 (396)
134 PRK08850 2-octaprenyl-6-methox 66.0 6.3 0.00014 38.3 3.6 29 50-78 5-36 (405)
135 PRK06184 hypothetical protein; 65.9 7.3 0.00016 39.1 4.1 31 49-79 3-36 (502)
136 PRK08605 D-lactate dehydrogena 65.9 4.9 0.00011 38.6 2.7 62 48-119 145-209 (332)
137 TIGR00873 gnd 6-phosphoglucona 65.8 9.4 0.0002 38.6 4.8 71 51-121 1-102 (467)
138 TIGR02279 PaaC-3OHAcCoADH 3-hy 65.8 6.3 0.00014 40.2 3.6 31 48-78 4-37 (503)
139 PRK07190 hypothetical protein; 65.7 6.9 0.00015 39.5 3.9 30 50-79 6-38 (487)
140 TIGR01763 MalateDH_bact malate 65.6 6.5 0.00014 37.3 3.5 32 50-81 2-37 (305)
141 PRK06185 hypothetical protein; 65.5 6.6 0.00014 37.9 3.6 31 50-80 7-40 (407)
142 PTZ00367 squalene epoxidase; P 64.8 7.2 0.00016 40.4 3.8 30 50-79 34-66 (567)
143 PRK11728 hydroxyglutarate oxid 64.7 7 0.00015 37.8 3.6 30 50-79 3-37 (393)
144 cd05291 HicDH_like L-2-hydroxy 64.6 7 0.00015 36.9 3.5 31 50-80 1-36 (306)
145 CHL00194 ycf39 Ycf39; Provisio 64.5 6.8 0.00015 36.7 3.4 30 50-79 1-34 (317)
146 PF01266 DAO: FAD dependent ox 64.5 6.6 0.00014 36.3 3.3 31 51-82 1-34 (358)
147 cd01487 E1_ThiF_like E1_ThiF_l 63.9 8.5 0.00018 33.4 3.6 28 51-78 1-32 (174)
148 cd01483 E1_enzyme_family Super 63.8 8.6 0.00019 31.7 3.5 17 51-67 1-17 (143)
149 COG0111 SerA Phosphoglycerate 63.4 11 0.00024 36.3 4.6 62 49-119 142-206 (324)
150 PRK12475 thiamine/molybdopteri 63.4 7.8 0.00017 37.4 3.6 31 49-79 24-58 (338)
151 PRK08243 4-hydroxybenzoate 3-m 63.2 7.5 0.00016 37.6 3.5 30 50-79 3-35 (392)
152 COG0665 DadA Glycine/D-amino a 62.9 8.1 0.00018 36.7 3.6 31 49-79 4-37 (387)
153 PRK06475 salicylate hydroxylas 62.9 8.3 0.00018 37.4 3.7 32 50-81 3-37 (400)
154 PRK13302 putative L-aspartate 62.8 5.8 0.00013 37.0 2.5 19 49-67 6-24 (271)
155 PRK05714 2-octaprenyl-3-methyl 62.7 8.5 0.00018 37.3 3.8 29 51-79 4-35 (405)
156 TIGR03736 PRTRC_ThiF PRTRC sys 62.6 5.5 0.00012 36.8 2.3 19 48-66 10-28 (244)
157 PRK08244 hypothetical protein; 62.2 8.4 0.00018 38.6 3.7 30 50-79 3-35 (493)
158 PRK00066 ldh L-lactate dehydro 62.0 6.3 0.00014 37.6 2.6 33 48-80 5-42 (315)
159 PRK11790 D-3-phosphoglycerate 61.8 46 0.001 33.0 8.8 61 49-121 151-214 (409)
160 PF13460 NAD_binding_10: NADH( 61.7 8.5 0.00018 32.5 3.2 66 52-120 1-70 (183)
161 TIGR02360 pbenz_hydroxyl 4-hyd 61.6 8.5 0.00018 37.4 3.5 31 50-80 3-36 (390)
162 PRK07688 thiamine/molybdopteri 61.5 9 0.0002 37.0 3.7 30 49-78 24-57 (339)
163 PTZ00325 malate dehydrogenase; 61.4 6.8 0.00015 37.6 2.8 31 47-77 6-42 (321)
164 PRK11101 glpA sn-glycerol-3-ph 61.3 9.6 0.00021 39.1 4.0 30 50-79 7-39 (546)
165 PLN02602 lactate dehydrogenase 61.1 6.1 0.00013 38.4 2.4 31 50-80 38-73 (350)
166 COG0039 Mdh Malate/lactate deh 61.1 5.8 0.00012 38.1 2.2 32 50-81 1-37 (313)
167 PF01488 Shikimate_DH: Shikima 60.6 10 0.00022 31.3 3.4 32 48-79 11-46 (135)
168 PRK15409 bifunctional glyoxyla 60.6 26 0.00055 33.6 6.6 64 48-121 144-211 (323)
169 PLN02985 squalene monooxygenas 60.5 11 0.00023 38.5 4.2 32 48-79 42-76 (514)
170 PRK13512 coenzyme A disulfide 60.5 9.8 0.00021 37.6 3.8 34 49-82 1-39 (438)
171 PRK11259 solA N-methyltryptoph 60.4 9.8 0.00021 36.1 3.7 30 50-79 4-36 (376)
172 PRK10538 malonic semialdehyde 60.0 9.6 0.00021 34.0 3.4 30 50-79 1-34 (248)
173 PRK10157 putative oxidoreducta 59.9 11 0.00024 37.3 4.0 31 49-79 5-38 (428)
174 KOG1298 Squalene monooxygenase 59.8 12 0.00026 37.3 4.1 34 49-82 45-81 (509)
175 PTZ00082 L-lactate dehydrogena 59.8 9.8 0.00021 36.4 3.5 33 49-81 6-42 (321)
176 cd05293 LDH_1 A subgroup of L- 59.8 6.2 0.00013 37.7 2.2 31 50-80 4-39 (312)
177 PRK12770 putative glutamate sy 59.8 12 0.00026 35.7 4.2 33 48-80 17-52 (352)
178 PRK08255 salicylyl-CoA 5-hydro 59.6 8.8 0.00019 41.1 3.5 31 50-80 1-36 (765)
179 PLN02464 glycerol-3-phosphate 59.6 14 0.0003 38.7 4.9 32 48-79 70-104 (627)
180 PRK13369 glycerol-3-phosphate 59.0 11 0.00024 38.1 4.0 31 49-79 6-39 (502)
181 cd05297 GH4_alpha_glucosidase_ 58.1 10 0.00022 37.8 3.4 31 50-80 1-40 (423)
182 PLN00141 Tic62-NAD(P)-related 58.1 11 0.00023 34.0 3.4 31 49-79 17-51 (251)
183 cd01078 NAD_bind_H4MPT_DH NADP 58.0 12 0.00026 32.5 3.6 32 48-79 27-62 (194)
184 TIGR01984 UbiH 2-polyprenyl-6- 57.9 11 0.00025 35.8 3.7 30 51-80 1-34 (382)
185 PTZ00117 malate dehydrogenase; 57.8 11 0.00024 36.0 3.5 32 49-80 5-40 (319)
186 cd01337 MDH_glyoxysomal_mitoch 57.6 7.1 0.00015 37.3 2.2 18 50-67 1-19 (310)
187 COG1249 Lpd Pyruvate/2-oxoglut 56.9 9.8 0.00021 38.4 3.1 32 50-81 174-208 (454)
188 PRK08410 2-hydroxyacid dehydro 56.9 24 0.00052 33.6 5.6 56 49-117 145-203 (311)
189 PRK13303 L-aspartate dehydroge 56.7 8.1 0.00017 35.8 2.3 18 50-67 2-19 (265)
190 TIGR02356 adenyl_thiF thiazole 56.7 13 0.00028 32.9 3.6 30 49-78 21-54 (202)
191 TIGR01373 soxB sarcosine oxida 56.6 14 0.00031 35.7 4.2 30 50-79 31-65 (407)
192 TIGR01988 Ubi-OHases Ubiquinon 56.6 12 0.00027 35.4 3.6 29 51-79 1-32 (385)
193 smart00846 Gp_dh_N Glyceraldeh 56.5 8.6 0.00019 32.7 2.3 18 50-67 1-18 (149)
194 cd05294 LDH-like_MDH_nadp A la 56.2 12 0.00026 35.6 3.4 30 50-79 1-36 (309)
195 PRK07608 ubiquinone biosynthes 56.0 12 0.00026 35.7 3.5 31 50-80 6-39 (388)
196 TIGR02853 spore_dpaA dipicolin 55.9 12 0.00026 35.2 3.4 32 48-79 150-184 (287)
197 PRK15182 Vi polysaccharide bio 55.8 12 0.00025 37.4 3.5 32 48-79 5-38 (425)
198 PRK11749 dihydropyrimidine deh 55.7 15 0.00033 36.5 4.3 33 49-81 140-175 (457)
199 PRK08268 3-hydroxy-acyl-CoA de 55.4 12 0.00026 38.1 3.6 31 49-79 7-40 (507)
200 cd05213 NAD_bind_Glutamyl_tRNA 55.2 12 0.00026 35.5 3.3 32 48-79 177-212 (311)
201 PRK07023 short chain dehydroge 54.9 13 0.00029 32.9 3.4 30 50-79 2-35 (243)
202 PRK11445 putative oxidoreducta 54.6 13 0.00029 35.4 3.6 30 50-80 2-34 (351)
203 PRK12266 glpD glycerol-3-phosp 54.0 15 0.00033 37.2 4.0 31 49-79 6-39 (508)
204 PTZ00142 6-phosphogluconate de 53.5 12 0.00026 37.9 3.1 72 50-121 2-105 (470)
205 cd05290 LDH_3 A subgroup of L- 53.5 9.4 0.0002 36.3 2.3 30 51-80 1-35 (307)
206 PLN02695 GDP-D-mannose-3',5'-e 53.4 16 0.00035 35.3 3.9 32 48-79 20-55 (370)
207 cd01484 E1-2_like Ubiquitin ac 53.2 16 0.00034 33.5 3.6 28 51-78 1-32 (234)
208 PRK13243 glyoxylate reductase; 53.2 15 0.00032 35.3 3.6 31 48-78 149-182 (333)
209 PRK06834 hypothetical protein; 53.1 14 0.0003 37.4 3.5 30 50-79 4-36 (488)
210 PF01408 GFO_IDH_MocA: Oxidore 53.0 10 0.00022 29.8 2.1 17 50-66 1-17 (120)
211 TIGR01381 E1_like_apg7 E1-like 52.7 14 0.00031 38.9 3.5 30 49-78 338-371 (664)
212 PRK13301 putative L-aspartate 52.7 10 0.00022 35.6 2.3 18 50-67 3-20 (267)
213 PRK12810 gltD glutamate syntha 52.5 18 0.00039 36.2 4.2 33 49-81 143-178 (471)
214 TIGR02355 moeB molybdopterin s 52.2 16 0.00034 33.5 3.4 30 49-78 24-57 (240)
215 PRK09564 coenzyme A disulfide 52.2 17 0.00038 35.6 4.0 32 50-81 1-37 (444)
216 cd01065 NAD_bind_Shikimate_DH 52.1 19 0.00041 29.7 3.7 31 48-78 18-52 (155)
217 PRK10015 oxidoreductase; Provi 52.1 17 0.00038 35.9 4.0 32 49-80 5-39 (429)
218 PLN02852 ferredoxin-NADP+ redu 51.9 22 0.00047 36.3 4.7 32 48-79 25-61 (491)
219 cd01489 Uba2_SUMO Ubiquitin ac 51.9 16 0.00035 35.0 3.6 28 51-78 1-32 (312)
220 PRK10675 UDP-galactose-4-epime 51.8 17 0.00036 34.0 3.6 28 50-77 1-32 (338)
221 PRK05335 tRNA (uracil-5-)-meth 51.6 16 0.00036 36.6 3.7 30 50-79 3-35 (436)
222 cd00757 ThiF_MoeB_HesA_family 51.6 16 0.00034 33.0 3.3 29 49-77 21-53 (228)
223 cd01486 Apg7 Apg7 is an E1-lik 51.5 17 0.00036 34.8 3.6 28 51-78 1-32 (307)
224 PRK08328 hypothetical protein; 51.5 17 0.00036 33.0 3.5 30 49-78 27-60 (231)
225 PRK08644 thiamine biosynthesis 51.4 18 0.00038 32.5 3.6 30 49-78 28-61 (212)
226 COG1023 Gnd Predicted 6-phosph 51.3 28 0.0006 32.6 4.8 58 50-107 1-82 (300)
227 TIGR01989 COQ6 Ubiquinone bios 51.2 16 0.00034 36.1 3.5 27 51-77 2-35 (437)
228 PF03486 HI0933_like: HI0933-l 51.1 16 0.00035 36.2 3.5 31 51-81 2-35 (409)
229 TIGR02032 GG-red-SF geranylger 50.8 17 0.00038 32.7 3.5 30 51-80 2-34 (295)
230 PRK11883 protoporphyrinogen ox 50.7 17 0.00037 35.4 3.7 32 50-81 1-37 (451)
231 PRK05257 malate:quinone oxidor 50.7 16 0.00034 37.1 3.5 32 49-80 5-41 (494)
232 TIGR01377 soxA_mon sarcosine o 50.6 16 0.00036 34.6 3.5 29 51-79 2-33 (380)
233 TIGR01292 TRX_reduct thioredox 50.5 17 0.00038 32.9 3.5 29 51-79 2-33 (300)
234 PRK12814 putative NADPH-depend 50.5 19 0.00042 37.7 4.2 32 49-80 193-227 (652)
235 TIGR01214 rmlD dTDP-4-dehydror 50.3 17 0.00037 33.0 3.4 28 51-78 1-32 (287)
236 TIGR03466 HpnA hopanoid-associ 50.3 15 0.00033 33.8 3.1 30 50-79 1-34 (328)
237 PRK06912 acoL dihydrolipoamide 50.2 17 0.00036 36.2 3.6 29 50-78 1-32 (458)
238 COG0677 WecC UDP-N-acetyl-D-ma 50.1 2.8E+02 0.0061 27.8 12.9 170 50-249 10-245 (436)
239 COG1052 LdhA Lactate dehydroge 50.0 11 0.00024 36.2 2.2 62 48-121 145-211 (324)
240 PRK08017 oxidoreductase; Provi 49.7 18 0.00039 32.1 3.4 29 51-79 4-36 (256)
241 PRK07574 formate dehydrogenase 49.5 17 0.00037 35.8 3.4 65 48-121 191-259 (385)
242 PRK05884 short chain dehydroge 49.3 19 0.00041 31.8 3.5 30 50-79 1-34 (223)
243 PRK15116 sulfur acceptor prote 49.3 19 0.00041 33.7 3.5 30 49-78 30-63 (268)
244 KOG2614 Kynurenine 3-monooxyge 49.2 16 0.00035 36.3 3.1 24 50-73 3-28 (420)
245 TIGR01790 carotene-cycl lycope 49.0 21 0.00045 34.2 3.9 30 51-80 1-33 (388)
246 PTZ00383 malate:quinone oxidor 49.0 33 0.00072 34.9 5.5 33 48-80 44-81 (497)
247 TIGR00292 thiazole biosynthesi 48.9 22 0.00048 32.7 3.9 33 49-81 21-56 (254)
248 TIGR01316 gltA glutamate synth 48.9 22 0.00048 35.3 4.2 31 49-79 133-166 (449)
249 PRK13304 L-aspartate dehydroge 48.6 12 0.00027 34.6 2.2 18 50-67 2-19 (265)
250 PLN02927 antheraxanthin epoxid 48.5 19 0.00042 38.1 3.8 31 48-78 80-113 (668)
251 cd00755 YgdL_like Family of ac 48.5 19 0.00042 32.8 3.4 30 49-78 11-44 (231)
252 PRK01747 mnmC bifunctional tRN 48.5 17 0.00036 38.1 3.4 31 49-79 260-293 (662)
253 COG0451 WcaG Nucleoside-diphos 48.5 20 0.00043 32.7 3.6 31 50-80 1-35 (314)
254 PRK06153 hypothetical protein; 48.3 16 0.00034 36.2 2.9 20 48-67 175-194 (393)
255 PF04321 RmlD_sub_bind: RmlD s 48.1 15 0.00032 34.2 2.7 29 50-78 1-33 (286)
256 PLN02928 oxidoreductase family 47.9 18 0.0004 34.9 3.3 30 49-78 159-191 (347)
257 TIGR03364 HpnW_proposed FAD de 47.9 20 0.00044 34.0 3.6 30 51-80 2-34 (365)
258 TIGR00031 UDP-GALP_mutase UDP- 47.5 23 0.00049 34.8 3.9 32 50-81 2-36 (377)
259 PRK07333 2-octaprenyl-6-methox 47.4 20 0.00044 34.4 3.6 30 50-79 2-36 (403)
260 PLN02572 UDP-sulfoquinovose sy 47.1 27 0.00059 34.7 4.5 29 48-76 46-78 (442)
261 KOG1399 Flavin-containing mono 47.1 19 0.0004 36.3 3.3 30 50-79 7-39 (448)
262 PF00044 Gp_dh_N: Glyceraldehy 47.0 19 0.00041 30.7 2.9 29 50-78 1-31 (151)
263 PLN02463 lycopene beta cyclase 46.8 33 0.00073 34.3 5.1 30 50-79 29-61 (447)
264 COG1712 Predicted dinucleotide 46.4 15 0.00032 33.9 2.2 19 50-68 1-19 (255)
265 PRK05653 fabG 3-ketoacyl-(acyl 46.4 24 0.00052 30.8 3.6 30 50-79 6-39 (246)
266 TIGR03649 ergot_EASG ergot alk 46.0 24 0.00051 32.2 3.6 30 51-80 1-34 (285)
267 PLN02778 3,5-epimerase/4-reduc 45.9 27 0.00059 32.6 4.1 27 48-74 8-37 (298)
268 PRK15438 erythronate-4-phospha 45.8 20 0.00044 35.2 3.3 30 48-77 115-147 (378)
269 PRK12831 putative oxidoreducta 45.7 26 0.00057 35.1 4.2 31 49-79 140-173 (464)
270 cd01488 Uba3_RUB Ubiquitin act 45.5 22 0.00047 33.8 3.3 17 51-67 1-17 (291)
271 PF13450 NAD_binding_8: NAD(P) 45.3 27 0.00058 25.3 3.1 28 54-81 1-31 (68)
272 TIGR02717 AcCoA-syn-alpha acet 45.2 64 0.0014 32.3 6.8 72 50-121 8-100 (447)
273 PF00732 GMC_oxred_N: GMC oxid 44.9 24 0.00052 32.4 3.5 31 52-82 3-37 (296)
274 PRK08294 phenol 2-monooxygenas 44.6 26 0.00057 36.7 4.1 31 49-79 32-66 (634)
275 TIGR01035 hemA glutamyl-tRNA r 44.4 23 0.00049 35.2 3.4 32 48-79 179-214 (417)
276 PRK12557 H(2)-dependent methyl 44.4 3E+02 0.0066 26.6 14.6 22 87-108 83-105 (342)
277 TIGR02023 BchP-ChlP geranylger 44.2 23 0.0005 34.2 3.4 28 51-78 2-32 (388)
278 KOG0069 Glyoxylate/hydroxypyru 44.2 15 0.00033 35.5 2.1 30 49-78 162-194 (336)
279 PRK11730 fadB multifunctional 44.1 20 0.00044 38.1 3.2 32 48-79 312-346 (715)
280 cd01080 NAD_bind_m-THF_DH_Cycl 44.1 24 0.00053 30.6 3.2 31 48-78 43-77 (168)
281 PLN02662 cinnamyl-alcohol dehy 44.0 25 0.00053 32.5 3.5 31 49-79 4-38 (322)
282 PRK05866 short chain dehydroge 43.9 31 0.00067 32.0 4.1 30 50-79 41-74 (293)
283 PLN02697 lycopene epsilon cycl 43.5 38 0.00082 34.8 5.0 32 49-80 108-142 (529)
284 PRK09496 trkA potassium transp 43.1 23 0.00051 34.7 3.3 32 48-79 230-264 (453)
285 PRK07251 pyridine nucleotide-d 42.7 26 0.00057 34.5 3.6 32 50-81 158-192 (438)
286 PRK10669 putative cation:proto 42.7 21 0.00046 36.6 3.0 30 50-79 418-450 (558)
287 TIGR01318 gltD_gamma_fam gluta 42.2 34 0.00073 34.3 4.3 31 50-80 142-175 (467)
288 PRK04176 ribulose-1,5-biphosph 42.1 33 0.00071 31.6 3.9 32 50-81 26-60 (257)
289 PRK00045 hemA glutamyl-tRNA re 42.0 26 0.00056 34.8 3.4 31 48-78 181-215 (423)
290 PLN02896 cinnamyl-alcohol dehy 41.9 30 0.00064 32.8 3.7 32 48-79 9-44 (353)
291 cd05191 NAD_bind_amino_acid_DH 41.7 35 0.00075 25.6 3.4 38 49-95 23-64 (86)
292 PRK07846 mycothione reductase; 41.6 28 0.0006 34.7 3.6 32 50-81 167-201 (451)
293 PRK05690 molybdopterin biosynt 41.6 28 0.00062 31.8 3.4 30 49-78 32-65 (245)
294 PRK06392 homoserine dehydrogen 41.5 19 0.00042 34.6 2.3 19 50-68 1-19 (326)
295 PRK06932 glycerate dehydrogena 41.4 28 0.0006 33.2 3.4 58 49-120 147-207 (314)
296 PF13738 Pyr_redox_3: Pyridine 41.3 28 0.00061 29.7 3.2 29 53-81 1-33 (203)
297 KOG2015 NEDD8-activating compl 41.3 22 0.00048 34.5 2.6 35 25-66 23-57 (422)
298 PLN02576 protoporphyrinogen ox 41.3 34 0.00074 34.1 4.2 34 48-81 11-48 (496)
299 PRK08762 molybdopterin biosynt 41.2 28 0.00062 33.9 3.5 30 49-78 135-168 (376)
300 PLN03209 translocon at the inn 41.2 39 0.00086 35.2 4.7 30 50-79 81-114 (576)
301 COG1179 Dinucleotide-utilizing 41.1 28 0.00061 32.4 3.2 17 50-66 31-47 (263)
302 PRK04207 glyceraldehyde-3-phos 41.1 19 0.00042 34.7 2.3 18 50-67 2-19 (341)
303 PRK07208 hypothetical protein; 40.9 34 0.00074 33.9 4.1 33 48-80 3-38 (479)
304 KOG3855 Monooxygenase involved 40.6 27 0.00059 35.0 3.2 30 39-68 26-56 (481)
305 PF07992 Pyr_redox_2: Pyridine 40.6 32 0.00069 29.2 3.4 29 51-79 1-32 (201)
306 PLN02350 phosphogluconate dehy 40.4 27 0.00057 35.7 3.3 73 48-120 5-110 (493)
307 PRK06487 glycerate dehydrogena 40.3 27 0.00058 33.3 3.1 57 49-120 148-207 (317)
308 TIGR01320 mal_quin_oxido malat 40.2 29 0.00064 35.0 3.6 29 51-79 2-35 (483)
309 COG1250 FadB 3-hydroxyacyl-CoA 40.0 28 0.00061 33.3 3.2 32 48-79 2-36 (307)
310 PRK06912 acoL dihydrolipoamide 39.8 32 0.00069 34.2 3.7 32 50-81 171-205 (458)
311 PRK03659 glutathione-regulated 39.6 26 0.00056 36.5 3.1 31 49-79 400-433 (601)
312 TIGR03452 mycothione_red mycot 39.4 32 0.00069 34.2 3.7 32 50-81 170-204 (452)
313 PRK02106 choline dehydrogenase 39.4 34 0.00073 35.1 3.9 30 50-79 6-39 (560)
314 PRK08306 dipicolinate synthase 39.3 31 0.00068 32.5 3.4 31 48-78 151-184 (296)
315 PF05834 Lycopene_cycl: Lycope 39.2 40 0.00087 32.6 4.2 30 52-81 2-36 (374)
316 PRK06467 dihydrolipoamide dehy 39.2 32 0.0007 34.4 3.6 32 50-81 175-209 (471)
317 TIGR01317 GOGAT_sm_gam glutama 39.1 37 0.00081 34.2 4.1 32 49-80 143-177 (485)
318 TIGR02437 FadB fatty oxidation 39.0 29 0.00063 37.0 3.4 32 48-79 312-346 (714)
319 PRK13403 ketol-acid reductoiso 38.9 29 0.00062 33.7 3.1 72 49-120 16-108 (335)
320 PRK08340 glucose-1-dehydrogena 38.9 30 0.00066 31.0 3.1 30 50-79 1-34 (259)
321 PRK06436 glycerate dehydrogena 38.9 30 0.00066 32.8 3.2 60 49-121 122-184 (303)
322 PLN03139 formate dehydrogenase 38.8 30 0.00066 34.1 3.3 66 48-121 198-266 (386)
323 TIGR01921 DAP-DH diaminopimela 38.8 27 0.00058 33.7 2.9 60 49-108 3-84 (324)
324 PRK07845 flavoprotein disulfid 38.7 33 0.00073 34.2 3.7 30 50-79 2-34 (466)
325 PRK05249 soluble pyridine nucl 38.5 33 0.00072 33.9 3.6 33 49-81 175-210 (461)
326 COG0562 Glf UDP-galactopyranos 38.4 35 0.00076 33.2 3.5 71 51-121 3-92 (374)
327 PRK13512 coenzyme A disulfide 38.3 31 0.00068 34.1 3.4 32 50-81 149-183 (438)
328 PRK05600 thiamine biosynthesis 38.1 23 0.0005 34.6 2.4 30 49-78 41-74 (370)
329 PRK12769 putative oxidoreducta 38.0 34 0.00074 35.8 3.7 31 50-80 328-361 (654)
330 PRK04965 NADH:flavorubredoxin 37.9 35 0.00076 32.8 3.6 32 50-81 142-176 (377)
331 PRK12771 putative glutamate sy 37.8 35 0.00075 35.0 3.7 30 49-78 137-169 (564)
332 TIGR01470 cysG_Nterm siroheme 37.8 39 0.00086 30.1 3.6 30 49-78 9-41 (205)
333 PRK00257 erythronate-4-phospha 37.7 32 0.0007 33.9 3.3 30 48-77 115-147 (381)
334 PRK00048 dihydrodipicolinate r 37.7 24 0.00052 32.5 2.3 18 50-67 2-20 (257)
335 cd05311 NAD_bind_2_malic_enz N 37.7 37 0.00081 30.7 3.5 31 48-78 24-60 (226)
336 TIGR02441 fa_ox_alpha_mit fatt 37.6 34 0.00074 36.6 3.7 32 48-79 334-368 (737)
337 cd01492 Aos1_SUMO Ubiquitin ac 37.5 37 0.0008 30.0 3.4 30 49-78 21-54 (197)
338 PF02254 TrkA_N: TrkA-N domain 37.4 40 0.00087 26.2 3.3 28 52-79 1-31 (116)
339 PLN02686 cinnamoyl-CoA reducta 37.4 59 0.0013 31.3 5.1 34 45-78 49-86 (367)
340 TIGR00137 gid_trmFO tRNA:m(5)U 37.4 35 0.00077 34.2 3.6 29 51-79 2-33 (433)
341 PLN02968 Probable N-acetyl-gam 37.4 42 0.00092 33.0 4.1 31 48-78 37-72 (381)
342 PRK11908 NAD-dependent epimera 37.3 33 0.00072 32.4 3.2 30 50-79 2-36 (347)
343 PF01118 Semialdhyde_dh: Semia 37.2 16 0.00035 29.3 1.0 18 51-68 1-19 (121)
344 PRK12809 putative oxidoreducta 37.2 36 0.00077 35.7 3.7 32 49-80 310-344 (639)
345 cd01485 E1-1_like Ubiquitin ac 37.1 26 0.00056 31.0 2.3 30 49-78 19-52 (198)
346 PRK09987 dTDP-4-dehydrorhamnos 37.0 36 0.00078 31.6 3.4 29 50-78 1-32 (299)
347 PRK07774 short chain dehydroge 37.0 37 0.0008 29.9 3.4 31 49-79 6-40 (250)
348 PRK07878 molybdopterin biosynt 36.9 34 0.00075 33.6 3.4 30 49-78 42-75 (392)
349 PRK07326 short chain dehydroge 36.9 36 0.00078 29.7 3.2 30 50-79 7-40 (237)
350 TIGR01421 gluta_reduc_1 glutat 36.8 37 0.00079 33.8 3.6 31 50-80 167-200 (450)
351 PRK08223 hypothetical protein; 36.7 36 0.00078 32.3 3.3 30 49-78 27-60 (287)
352 PRK07523 gluconate 5-dehydroge 36.7 41 0.0009 29.9 3.7 31 49-79 10-44 (255)
353 PRK07060 short chain dehydroge 36.6 46 0.00099 29.2 3.9 31 49-79 9-43 (245)
354 TIGR03169 Nterm_to_SelD pyridi 36.6 48 0.001 31.5 4.3 32 51-82 1-38 (364)
355 PRK05875 short chain dehydroge 36.6 41 0.0009 30.3 3.7 31 49-79 7-41 (276)
356 PRK05442 malate dehydrogenase; 36.4 26 0.00057 33.6 2.4 18 49-66 4-22 (326)
357 cd01339 LDH-like_MDH L-lactate 36.3 33 0.00072 32.1 3.0 30 52-81 1-34 (300)
358 PRK09754 phenylpropionate diox 36.1 38 0.00083 32.8 3.6 32 50-81 145-179 (396)
359 TIGR02053 MerA mercuric reduct 36.0 38 0.00083 33.5 3.6 32 50-81 167-201 (463)
360 PRK07251 pyridine nucleotide-d 35.9 41 0.00089 33.1 3.8 30 50-79 4-36 (438)
361 PRK07577 short chain dehydroge 35.9 44 0.00096 29.1 3.7 30 50-79 4-37 (234)
362 PRK06292 dihydrolipoamide dehy 35.8 40 0.00086 33.3 3.7 32 50-81 170-204 (460)
363 COG1063 Tdh Threonine dehydrog 35.8 43 0.00093 32.2 3.8 96 25-120 144-248 (350)
364 PRK05249 soluble pyridine nucl 35.6 44 0.00096 33.0 4.0 31 50-80 6-39 (461)
365 PRK07233 hypothetical protein; 35.5 42 0.00092 32.3 3.7 30 51-80 1-33 (434)
366 TIGR02622 CDP_4_6_dhtase CDP-g 35.5 39 0.00084 31.9 3.4 30 50-79 5-38 (349)
367 PRK07231 fabG 3-ketoacyl-(acyl 35.5 42 0.00091 29.5 3.4 31 49-79 5-39 (251)
368 PRK12839 hypothetical protein; 35.3 50 0.0011 34.1 4.4 38 42-79 1-41 (572)
369 PLN02358 glyceraldehyde-3-phos 35.3 29 0.00062 33.7 2.5 19 49-67 5-23 (338)
370 COG0579 Predicted dehydrogenas 35.2 40 0.00086 33.8 3.5 31 50-80 4-39 (429)
371 PRK00676 hemA glutamyl-tRNA re 34.9 39 0.00085 32.8 3.3 31 48-78 173-207 (338)
372 PRK14106 murD UDP-N-acetylmura 34.9 44 0.00095 32.9 3.8 31 49-79 5-38 (450)
373 PLN02989 cinnamyl-alcohol dehy 34.9 45 0.00099 30.9 3.7 31 49-79 5-39 (325)
374 PLN02272 glyceraldehyde-3-phos 34.8 29 0.00064 34.7 2.5 29 50-78 86-116 (421)
375 PRK06416 dihydrolipoamide dehy 34.7 41 0.0009 33.3 3.6 32 50-81 173-207 (462)
376 PRK05976 dihydrolipoamide dehy 34.7 40 0.00086 33.6 3.5 32 50-81 181-215 (472)
377 PLN02785 Protein HOTHEAD 34.5 57 0.0012 33.9 4.7 30 50-79 56-87 (587)
378 PRK05993 short chain dehydroge 34.4 42 0.00091 30.5 3.4 30 50-79 5-38 (277)
379 PRK12825 fabG 3-ketoacyl-(acyl 34.1 50 0.0011 28.7 3.7 29 50-78 7-39 (249)
380 PRK13748 putative mercuric red 34.0 42 0.00092 34.1 3.6 32 50-81 271-305 (561)
381 PRK08010 pyridine nucleotide-d 34.0 44 0.00096 32.9 3.7 32 50-81 159-193 (441)
382 PRK08219 short chain dehydroge 34.0 44 0.00095 28.8 3.3 28 50-78 4-35 (227)
383 PRK06924 short chain dehydroge 34.0 47 0.001 29.3 3.5 29 51-79 3-35 (251)
384 KOG0409 Predicted dehydrogenas 33.9 91 0.002 30.0 5.5 55 48-102 34-109 (327)
385 PRK06196 oxidoreductase; Provi 33.9 51 0.0011 30.7 3.9 32 48-79 25-60 (315)
386 PRK05717 oxidoreductase; Valid 33.8 50 0.0011 29.4 3.7 31 48-78 9-43 (255)
387 PRK06057 short chain dehydroge 33.8 44 0.00095 29.8 3.3 30 50-79 8-41 (255)
388 COG0026 PurK Phosphoribosylami 33.8 1.2E+02 0.0027 29.8 6.5 31 50-80 2-35 (375)
389 TIGR01350 lipoamide_DH dihydro 33.7 43 0.00094 33.0 3.5 27 51-77 3-32 (461)
390 KOG0029 Amine oxidase [Seconda 33.6 44 0.00095 34.2 3.6 34 45-78 11-48 (501)
391 PRK15076 alpha-galactosidase; 33.6 28 0.00061 34.8 2.2 30 50-79 2-40 (431)
392 PLN02206 UDP-glucuronate decar 33.6 41 0.00089 33.6 3.4 30 48-77 118-151 (442)
393 cd05211 NAD_bind_Glu_Leu_Phe_V 33.6 45 0.00097 30.1 3.3 21 48-68 22-42 (217)
394 PLN00198 anthocyanidin reducta 33.6 49 0.0011 31.0 3.8 32 48-79 8-43 (338)
395 PRK06940 short chain dehydroge 33.6 47 0.001 30.3 3.6 29 51-79 4-34 (275)
396 TIGR01772 MDH_euk_gproteo mala 33.5 30 0.00064 33.1 2.2 29 51-79 1-35 (312)
397 PRK12829 short chain dehydroge 33.5 43 0.00094 29.7 3.2 32 48-79 10-45 (264)
398 PTZ00318 NADH dehydrogenase-li 33.5 57 0.0012 32.1 4.3 33 49-81 10-45 (424)
399 TIGR02462 pyranose_ox pyranose 33.5 45 0.00098 34.5 3.7 32 50-81 1-35 (544)
400 TIGR02733 desat_CrtD C-3',4' d 33.4 49 0.0011 33.1 3.9 31 50-80 2-35 (492)
401 cd01490 Ube1_repeat2 Ubiquitin 33.4 29 0.00063 34.8 2.2 16 51-66 1-16 (435)
402 PRK05597 molybdopterin biosynt 33.3 44 0.00095 32.4 3.4 30 49-78 28-61 (355)
403 PRK06370 mercuric reductase; V 33.2 45 0.00097 33.1 3.6 32 50-81 172-206 (463)
404 PLN02427 UDP-apiose/xylose syn 33.0 47 0.001 31.9 3.6 31 48-78 13-48 (386)
405 COG2303 BetA Choline dehydroge 33.0 43 0.00093 34.4 3.5 30 50-79 8-40 (542)
406 PRK07825 short chain dehydroge 32.7 54 0.0012 29.5 3.8 31 49-79 5-39 (273)
407 PRK06327 dihydrolipoamide dehy 32.6 47 0.001 33.2 3.6 32 50-81 184-218 (475)
408 COG1233 Phytoene dehydrogenase 32.4 51 0.0011 33.3 3.8 33 49-81 3-38 (487)
409 PLN02653 GDP-mannose 4,6-dehyd 32.4 51 0.0011 30.9 3.6 32 48-79 5-40 (340)
410 PRK07411 hypothetical protein; 32.3 44 0.00094 32.9 3.2 30 49-78 38-71 (390)
411 PRK14727 putative mercuric red 32.2 50 0.0011 33.1 3.7 32 50-81 189-223 (479)
412 PRK03562 glutathione-regulated 32.2 39 0.00085 35.3 3.1 31 49-79 400-433 (621)
413 TIGR00036 dapB dihydrodipicoli 32.1 33 0.00071 31.8 2.2 38 168-205 106-143 (266)
414 PRK08264 short chain dehydroge 31.9 52 0.0011 28.8 3.4 30 50-79 7-41 (238)
415 TIGR01759 MalateDH-SF1 malate 31.8 33 0.00072 32.9 2.3 17 50-66 4-21 (323)
416 PRK06182 short chain dehydroge 31.8 54 0.0012 29.6 3.6 30 50-79 4-37 (273)
417 PRK08309 short chain dehydroge 31.8 52 0.0011 28.5 3.3 29 50-78 1-32 (177)
418 cd01338 MDH_choloroplast_like 31.6 31 0.00067 33.1 2.0 32 50-81 3-45 (322)
419 PRK05225 ketol-acid reductoiso 31.6 40 0.00087 34.2 2.9 30 49-78 36-68 (487)
420 PRK12939 short chain dehydroge 31.6 49 0.0011 29.0 3.2 31 49-79 7-41 (250)
421 PRK00258 aroE shikimate 5-dehy 31.6 47 0.001 30.8 3.2 29 50-78 124-156 (278)
422 TIGR01350 lipoamide_DH dihydro 31.5 51 0.0011 32.5 3.7 32 50-81 171-205 (461)
423 PRK12827 short chain dehydroge 31.5 51 0.0011 28.8 3.3 30 49-78 6-39 (249)
424 PRK07102 short chain dehydroge 31.4 48 0.001 29.2 3.2 30 50-79 2-35 (243)
425 KOG2018 Predicted dinucleotide 31.4 30 0.00065 33.5 1.8 19 50-68 75-93 (430)
426 PRK06115 dihydrolipoamide dehy 31.4 52 0.0011 32.8 3.7 32 50-81 175-209 (466)
427 TIGR00518 alaDH alanine dehydr 31.3 48 0.001 32.3 3.4 30 49-78 167-199 (370)
428 PRK12367 short chain dehydroge 31.3 48 0.001 30.0 3.2 31 49-79 14-48 (245)
429 PRK12828 short chain dehydroge 31.2 53 0.0012 28.4 3.4 30 50-79 8-41 (239)
430 TIGR02964 xanthine_xdhC xanthi 31.2 1.9E+02 0.0041 26.6 7.1 106 50-182 101-213 (246)
431 PLN00106 malate dehydrogenase 31.2 33 0.00072 32.9 2.2 65 50-121 19-97 (323)
432 TIGR01832 kduD 2-deoxy-D-gluco 31.2 54 0.0012 28.9 3.4 30 50-79 6-39 (248)
433 PRK07845 flavoprotein disulfid 31.0 52 0.0011 32.8 3.6 32 50-81 178-212 (466)
434 PRK09754 phenylpropionate diox 31.0 72 0.0016 30.9 4.5 33 50-82 4-41 (396)
435 PF13380 CoA_binding_2: CoA bi 31.0 64 0.0014 25.9 3.5 71 51-122 2-91 (116)
436 PTZ00153 lipoamide dehydrogena 30.9 50 0.0011 35.0 3.6 32 50-81 313-347 (659)
437 PRK04965 NADH:flavorubredoxin 30.8 66 0.0014 30.9 4.2 32 50-81 3-39 (377)
438 PRK11154 fadJ multifunctional 30.8 39 0.00085 35.9 2.8 32 48-79 308-343 (708)
439 PRK06116 glutathione reductase 30.7 53 0.0011 32.4 3.6 32 50-81 168-202 (450)
440 COG2081 Predicted flavoprotein 30.7 61 0.0013 32.3 3.9 32 49-80 3-37 (408)
441 cd01076 NAD_bind_1_Glu_DH NAD( 30.7 54 0.0012 29.8 3.4 30 48-77 30-62 (227)
442 PRK07806 short chain dehydroge 30.6 54 0.0012 28.9 3.4 30 50-79 7-40 (248)
443 PRK06701 short chain dehydroge 30.6 72 0.0016 29.4 4.3 31 49-79 46-80 (290)
444 PRK07454 short chain dehydroge 30.5 59 0.0013 28.5 3.6 30 50-79 7-40 (241)
445 PF03435 Saccharop_dh: Sacchar 30.5 50 0.0011 31.9 3.3 28 52-79 1-33 (386)
446 PLN02214 cinnamoyl-CoA reducta 30.5 55 0.0012 31.0 3.6 31 49-79 10-44 (342)
447 TIGR03385 CoA_CoA_reduc CoA-di 30.4 54 0.0012 32.0 3.6 32 50-81 138-172 (427)
448 PRK13581 D-3-phosphoglycerate 30.4 48 0.0011 33.9 3.3 29 49-77 140-171 (526)
449 TIGR03329 Phn_aa_oxid putative 30.1 57 0.0012 32.4 3.7 30 50-79 25-59 (460)
450 PLN02306 hydroxypyruvate reduc 30.1 37 0.0008 33.5 2.3 30 49-78 165-198 (386)
451 PRK07109 short chain dehydroge 30.0 66 0.0014 30.5 4.0 30 50-79 9-42 (334)
452 TIGR02440 FadJ fatty oxidation 30.0 51 0.0011 35.1 3.5 31 49-79 304-338 (699)
453 PHA03357 Alkaline exonuclease; 29.9 34 0.00075 25.8 1.6 20 18-37 48-67 (81)
454 PRK06467 dihydrolipoamide dehy 29.7 63 0.0014 32.3 4.0 31 50-80 5-38 (471)
455 PF13478 XdhC_C: XdhC Rossmann 29.7 1.3E+02 0.0028 25.0 5.3 69 52-126 1-74 (136)
456 PRK00683 murD UDP-N-acetylmura 29.6 59 0.0013 31.9 3.7 29 50-78 4-35 (418)
457 TIGR01758 MDH_euk_cyt malate d 29.6 37 0.00081 32.5 2.2 30 51-80 1-41 (324)
458 PRK06949 short chain dehydroge 29.6 68 0.0015 28.3 3.8 31 49-79 9-43 (258)
459 PTZ00188 adrenodoxin reductase 29.5 68 0.0015 32.9 4.1 30 50-79 40-73 (506)
460 PF02629 CoA_binding: CoA bind 29.5 39 0.00085 26.0 2.0 16 50-65 4-19 (96)
461 COG0446 HcaD Uncharacterized N 29.4 56 0.0012 30.9 3.4 32 50-81 137-171 (415)
462 TIGR01423 trypano_reduc trypan 29.3 50 0.0011 33.4 3.2 32 50-81 188-225 (486)
463 PRK13984 putative oxidoreducta 29.2 67 0.0015 33.2 4.2 32 49-80 283-317 (604)
464 PRK08010 pyridine nucleotide-d 29.1 63 0.0014 31.8 3.8 30 50-79 4-36 (441)
465 PTZ00058 glutathione reductase 29.0 53 0.0011 34.0 3.3 33 49-81 237-272 (561)
466 PRK14694 putative mercuric red 28.8 63 0.0014 32.2 3.8 33 50-82 179-214 (468)
467 TIGR01810 betA choline dehydro 28.7 57 0.0012 33.1 3.5 29 52-80 2-34 (532)
468 PRK06523 short chain dehydroge 28.5 70 0.0015 28.4 3.7 31 49-79 9-43 (260)
469 PRK14989 nitrite reductase sub 28.5 67 0.0014 35.0 4.1 33 50-82 4-43 (847)
470 PRK12320 hypothetical protein; 28.4 55 0.0012 35.0 3.3 31 50-80 1-35 (699)
471 PLN02166 dTDP-glucose 4,6-dehy 28.3 58 0.0013 32.4 3.4 31 48-78 119-153 (436)
472 PRK06935 2-deoxy-D-gluconate 3 28.3 75 0.0016 28.3 3.9 31 49-79 15-49 (258)
473 COG0373 HemA Glutamyl-tRNA red 28.3 54 0.0012 32.8 3.1 31 48-78 177-211 (414)
474 PLN02240 UDP-glucose 4-epimera 28.2 62 0.0013 30.3 3.5 29 50-78 6-38 (352)
475 PRK08401 L-aspartate oxidase; 28.2 59 0.0013 32.5 3.5 29 50-78 2-33 (466)
476 TIGR00507 aroE shikimate 5-deh 28.2 65 0.0014 29.7 3.5 30 49-78 117-149 (270)
477 TIGR01424 gluta_reduc_2 glutat 28.2 61 0.0013 32.1 3.5 32 50-81 167-201 (446)
478 PF07991 IlvN: Acetohydroxy ac 28.1 65 0.0014 28.1 3.2 32 49-80 4-38 (165)
479 TIGR01472 gmd GDP-mannose 4,6- 28.1 61 0.0013 30.4 3.4 30 50-79 1-34 (343)
480 PRK05557 fabG 3-ketoacyl-(acyl 28.0 77 0.0017 27.5 3.8 31 49-79 5-39 (248)
481 PF13738 Pyr_redox_3: Pyridine 27.9 1.1E+02 0.0024 25.9 4.8 33 48-80 166-201 (203)
482 PRK08267 short chain dehydroge 27.7 68 0.0015 28.6 3.5 29 51-79 3-35 (260)
483 KOG0023 Alcohol dehydrogenase, 27.7 52 0.0011 32.0 2.7 31 49-80 182-216 (360)
484 TIGR00562 proto_IX_ox protopor 27.7 68 0.0015 31.5 3.8 32 50-81 3-41 (462)
485 PLN02507 glutathione reductase 27.6 61 0.0013 32.8 3.5 31 51-81 205-238 (499)
486 PRK06180 short chain dehydroge 27.5 70 0.0015 29.0 3.6 30 50-79 5-38 (277)
487 PRK07818 dihydrolipoamide dehy 27.5 64 0.0014 32.1 3.6 32 50-81 173-207 (466)
488 PLN02268 probable polyamine ox 27.4 58 0.0013 31.8 3.2 26 51-76 2-30 (435)
489 PRK07843 3-ketosteroid-delta-1 27.2 80 0.0017 32.5 4.3 32 48-79 6-40 (557)
490 PRK07831 short chain dehydroge 27.1 66 0.0014 28.8 3.3 29 50-78 18-51 (262)
491 PLN02328 lysine-specific histo 27.1 76 0.0016 34.5 4.2 31 48-78 237-270 (808)
492 PF00743 FMO-like: Flavin-bind 27.1 60 0.0013 33.3 3.3 31 50-80 2-35 (531)
493 TIGR03798 ocin_TIGR03798 bacte 27.1 1.1E+02 0.0023 21.9 3.8 45 224-277 17-63 (64)
494 TIGR01850 argC N-acetyl-gamma- 27.1 43 0.00093 32.3 2.2 19 50-68 1-20 (346)
495 PF02844 GARS_N: Phosphoribosy 27.0 31 0.00068 27.5 1.0 17 50-66 1-17 (100)
496 PF05368 NmrA: NmrA-like famil 27.0 66 0.0014 28.3 3.2 67 52-120 1-75 (233)
497 PRK06841 short chain dehydroge 26.9 68 0.0015 28.3 3.3 32 49-80 15-50 (255)
498 KOG3923 D-aspartate oxidase [A 26.8 33 0.00073 32.9 1.3 17 49-65 3-19 (342)
499 PLN00203 glutamyl-tRNA reducta 26.8 56 0.0012 33.5 3.1 30 49-78 266-299 (519)
500 PRK14188 bifunctional 5,10-met 26.8 82 0.0018 30.0 3.9 47 27-73 134-185 (296)
No 1
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=100.00 E-value=1.7e-39 Score=306.69 Aligned_cols=243 Identities=19% Similarity=0.196 Sum_probs=183.6
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC-CCC-----------------------CC-----CCCcEEEEecCcc
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE-LVP-----------------------LD-----FEGPIFVCTRNDD 97 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~-~~~-----------------------~~-----~~~~IlvatK~~d 97 (308)
|||+|+|+|+||++||+++ +|++| +|.|+. ++. .+ +.+.||||||+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 8999999999999999764 58887 999963 320 00 1156899999999
Q ss_pred HHHHHHhCCCC--CCCeEEEEecCCC-hhHHhhcCCCCCceeEEEEEeeccCCCC-CCCceecCCCCCccccc----ccH
Q 021746 98 LEAVLEAAPRS--RWNDLVFFQNGMI-EPWLESKGLKDANQVLAYFAVSKLGERP-IDGKTDTNPEGLTAAYG----KWA 169 (308)
Q Consensus 98 l~~~l~~l~~~--~~t~IV~LQNGl~-~~~l~~~~~~~~~~v~~~~~~~~~G~~~-~dg~i~~~g~g~~~~~G----~~a 169 (308)
++++++++.+. .++.||++|||++ ++.+..+ ++.. . ++.++...|... .+|++.+++.+... +| +..
T Consensus 83 ~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~-~~~~-~--v~~g~~~~ga~~~~pg~v~~~~~g~~~-~G~~~~~~~ 157 (305)
T PRK05708 83 AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAAR-VPHA-R--CIFASSTEGAFRDGDWRVVFAGHGFTW-LGDPRNPTA 157 (305)
T ss_pred HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHh-CCCC-c--EEEEEeeeceecCCCCEEEEeceEEEE-EcCCCCcch
Confidence 99999999884 5689999999999 4555433 2221 1 233333444432 23677776655432 33 446
Q ss_pred HHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHHHHHHhcCCCCCh
Q 021746 170 SVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAAAAEKGITFDP 249 (308)
Q Consensus 170 ~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~avA~a~~Gv~l~~ 249 (308)
+++.+.|+++|+++.+ ++||+.++|+||+|||++|++||++ ++++|++... .++++.+|+|+.+++++ .|+.+++
T Consensus 158 ~~l~~~l~~ag~~~~~--~~di~~~~W~Kl~~N~~~N~ltal~-~~~~g~l~~~-~~~~~~l~~E~~~va~a-~G~~~~~ 232 (305)
T PRK05708 158 PAWLDDLREAGIPHEW--TVDILTRLWRKLALNCAINPLTVLH-DCRNGGLLEH-AQEVAALCAELSELLRR-CGQPAAA 232 (305)
T ss_pred HHHHHHHHhcCCCCcc--CHHHHHHHHHHHHHHccccHhHHhh-CCCCcchhcC-HHHHHHHHHHHHHHHHH-cCCCccH
Confidence 8899999999999985 4699999999999999999999999 8999999543 26789999999999997 7999885
Q ss_pred H-HHHHHHHHhhhcCCCCc---------chhhhhhhhhHHhhcchHHHhCCCCCCCcchHHHHHHhcc
Q 021746 250 A-MEDRLCAYSRAVANFPT---------AVKEFKWRNGWFYSLSEKASAEGKPDPCPLHTAWLKEIKV 307 (308)
Q Consensus 250 ~-~~e~~~~~~~~~~~~~t---------~~~Ei~~~nG~vv~~~~~~~~~Gv~~p~P~~~~l~~~~~~ 307 (308)
+ ..+.+.+..+..+...+ +++|+|+||||++++ |+++|+ |+|+|+.+|+.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~sSM~qD~~~gR~tEid~i~G~vvr~---a~~~Gv--~~P~~~~l~~~v~~ 295 (305)
T PRK05708 233 ANLHEEVQRVIQATAANYSSMYQDVRAGRRTEISYLLGYACRA---ADRHGL--PLPRLQHLQQRLVA 295 (305)
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHcCCceeehhhhhHHHHH---HHHcCC--CCchHHHHHHHHHH
Confidence 4 44555544444433222 156999999999988 568899 99999999988763
No 2
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=100.00 E-value=2.4e-39 Score=306.04 Aligned_cols=245 Identities=24% Similarity=0.274 Sum_probs=196.0
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCC-----------------------CC-----CCCcEEEEecCccH
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVP-----------------------LD-----FEGPIFVCTRNDDL 98 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~-----------------------~~-----~~~~IlvatK~~dl 98 (308)
|||.|+|+|+||+|||+++ +|+|| ++.|++++. .+ ..+.|+|+||+|++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q~ 80 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQL 80 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccccH
Confidence 8999999999999999764 57787 999987520 00 12569999999999
Q ss_pred HHHHHhCCCC--CCCeEEEEecCCC-hhHHhhcCCCCCceeEEEEEeeccCCCC-CCCceecCCCCCcc---ccc---cc
Q 021746 99 EAVLEAAPRS--RWNDLVFFQNGMI-EPWLESKGLKDANQVLAYFAVSKLGERP-IDGKTDTNPEGLTA---AYG---KW 168 (308)
Q Consensus 99 ~~~l~~l~~~--~~t~IV~LQNGl~-~~~l~~~~~~~~~~v~~~~~~~~~G~~~-~dg~i~~~g~g~~~---~~G---~~ 168 (308)
+++++.+.+. +.|.|+++|||++ .+.+.... . ..+ ++.++...|... .+|++++.+.|... ..| +.
T Consensus 81 ~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~-~-~~~--il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~ 156 (307)
T COG1893 81 EEALPSLAPLLGPNTVVLFLQNGLGHEEELRKIL-P-KET--VLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDEL 156 (307)
T ss_pred HHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhC-C-cce--EEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHH
Confidence 9999999995 4567999999999 44554432 1 112 344444555532 35778887755532 233 34
Q ss_pred HHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCcccccc--ccchHHHHHHHHHHHHHHHHHhcCCC
Q 021746 169 ASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVV--EKEYRSEVSALIAELALAAAAEKGIT 246 (308)
Q Consensus 169 a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L--~~~~~~~~~~lm~Ev~avA~a~~Gv~ 246 (308)
.+.+++.|+.+|++.++. +||+..+|+|+++||++|++|+++ ++++|++ .++.+++++++|.|+.+++++ .|+.
T Consensus 157 ~~~i~~~~~~a~~~~~~~--~di~~~~w~Kl~~N~~inpltall-~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~-~g~~ 232 (307)
T COG1893 157 VKALAELFKEAGLEVELH--PDILAAIWRKLVVNAAINPLTALL-DCNNGELLENPEARALIRALVAEVVAVARA-EGVE 232 (307)
T ss_pred HHHHHHHHHhCCCCeEEc--HHHHHHHHHHHHhhhccchhhhhh-cCCchHHhcChhHHHHHHHHHHHHHHHHHh-ccCC
Confidence 678999999999998865 699999999999999999999999 8999999 334789999999999999997 7999
Q ss_pred CChHHHHHHHHHhhhc-C-CCCcc--------hhhhhhhhhHHhhcchHHHhCCCCCCCcchHHHHHHhcc
Q 021746 247 FDPAMEDRLCAYSRAV-A-NFPTA--------VKEFKWRNGWFYSLSEKASAEGKPDPCPLHTAWLKEIKV 307 (308)
Q Consensus 247 l~~~~~e~~~~~~~~~-~-~~~t~--------~~Ei~~~nG~vv~~~~~~~~~Gv~~p~P~~~~l~~~~~~ 307 (308)
++++.++++..+++.+ + ++++| ++|+|+||||++++ |+++|+ +||+++.||.-|+.
T Consensus 233 ~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i~G~vv~~---a~~~gi--~~P~~~~L~~lvk~ 298 (307)
T COG1893 233 LPEEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAINGAVVRL---AKKHGL--ATPVNDTLYALLKA 298 (307)
T ss_pred CCHHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHHhhHHHHH---HHHhCC--CCcHHHHHHHHHHH
Confidence 9999999999999988 3 34443 78999999999977 678899 99999999988763
No 3
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=100.00 E-value=2.8e-38 Score=299.00 Aligned_cols=247 Identities=18% Similarity=0.240 Sum_probs=190.3
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCCC---------C----------C----CC-----CCCcEEEEecCc
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL---------V----------P----LD-----FEGPIFVCTRND 96 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~---------~----------~----~~-----~~~~IlvatK~~ 96 (308)
..|+|+|||+|+||++||.++ +|++| ++.|+.. + + .+ ..+.||||||++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~ 83 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT 83 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence 459999999999999999764 58887 9999651 0 0 01 125699999999
Q ss_pred cHHHHHHhCCCC--CCCeEEEEecCCC-hhHHhhc-CCCCCceeEEEEEeeccCCCCCCCceecCCCCCcc---ccc---
Q 021746 97 DLEAVLEAAPRS--RWNDLVFFQNGMI-EPWLESK-GLKDANQVLAYFAVSKLGERPIDGKTDTNPEGLTA---AYG--- 166 (308)
Q Consensus 97 dl~~~l~~l~~~--~~t~IV~LQNGl~-~~~l~~~-~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~~~---~~G--- 166 (308)
++.++++.+.+. +++.||++|||++ ++.+..+ +.......+++++....|+ +++.+.+.|... ..|
T Consensus 84 ~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~~g~~~~~a~~~~p----g~v~~~~~g~~~iG~~~~~~~ 159 (313)
T PRK06249 84 ANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLLGGLCFICSNRVGP----GVIHHLAYGRVNLGYHSGPAA 159 (313)
T ss_pred ChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEeeeEeEecCCC----eEEEECCCCcEEEecCCCCcc
Confidence 999999998884 4678999999998 4555433 2122222344555444444 556665544421 112
Q ss_pred -----ccHHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCcccccc--ccchHHHHHHHHHHHHHHH
Q 021746 167 -----KWASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVV--EKEYRSEVSALIAELALAA 239 (308)
Q Consensus 167 -----~~a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L--~~~~~~~~~~lm~Ev~avA 239 (308)
+..+.+++.|+.+|+++.+. +||+..+|+||+|||++|++||++ ++++|++ .+..+++++.+|+|+.+++
T Consensus 160 ~~~~~~~~~~l~~~l~~ag~~~~~~--~di~~~~W~Kl~~N~~~n~ltal~-~~~~g~l~~~~~~~~l~~~~~~E~~~va 236 (313)
T PRK06249 160 DDGITARVEEGAALFRAAGIDSQAM--PDLAQARWQKLVWNIPYNGLSVLL-NASTDPLMADPDSRALIRALMAEVIQGA 236 (313)
T ss_pred cchHHHHHHHHHHHHHhCCCCceeC--chHHHHHHhHhheecchhHHHHHh-CCChHHHHhCccHHHHHHHHHHHHHHHH
Confidence 23456899999999999764 599999999999999999999999 8999998 3447899999999999999
Q ss_pred HHhcCCCCChHHHHHHHHHhhhcCCCCc-c--------hhhhhhhhhHHhhcchHHHhCCCCCCCcchHHHHHHhcc
Q 021746 240 AAEKGITFDPAMEDRLCAYSRAVANFPT-A--------VKEFKWRNGWFYSLSEKASAEGKPDPCPLHTAWLKEIKV 307 (308)
Q Consensus 240 ~a~~Gv~l~~~~~e~~~~~~~~~~~~~t-~--------~~Ei~~~nG~vv~~~~~~~~~Gv~~p~P~~~~l~~~~~~ 307 (308)
++ .|+.++++..+++++.++..+...+ | ++|+|+|||+++++ |+++|+ +||+|+.+|..++.
T Consensus 237 ~a-~Gi~~~~~~~~~~~~~~~~~~~~~sSM~qD~~~gr~tEid~i~G~vv~~---a~~~Gi--~~P~~~~l~~~l~~ 307 (313)
T PRK06249 237 AA-CGHTLPEGYADHMLAVTERMPDYRPSMYHDFEEGRPLELEAIYANPLAA---ARAAGC--AMPRVEMLYQALEF 307 (313)
T ss_pred Hh-cCCCCChhHHHHHHHHhhcCCCCCChHHHHHHCCCcccHHHHhhHHHHH---HHHhCC--CCcHHHHHHHHHHH
Confidence 97 7999999988999988876653222 1 67999999999987 668899 99999999998764
No 4
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=100.00 E-value=8.2e-33 Score=259.02 Aligned_cols=244 Identities=20% Similarity=0.233 Sum_probs=180.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC-------------------C----CC------CCCcEEEEecCcc
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV-------------------P----LD------FEGPIFVCTRNDD 97 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~-------------------~----~~------~~~~IlvatK~~d 97 (308)
|+|+|+|+|++|+++|..+ +|++| ++.|++++ + .+ ..+.||+|||+++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~~ 80 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAYQ 80 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecccC
Confidence 7999999999999999653 58887 88984321 0 01 1246999999999
Q ss_pred HHHHHHhCCCC--CCCeEEEEecCCC-hhHHhhc-CCCCCceeEEEEEeeccCCCCCCCceecCCCCCccccc-------
Q 021746 98 LEAVLEAAPRS--RWNDLVFFQNGMI-EPWLESK-GLKDANQVLAYFAVSKLGERPIDGKTDTNPEGLTAAYG------- 166 (308)
Q Consensus 98 l~~~l~~l~~~--~~t~IV~LQNGl~-~~~l~~~-~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~~~~~G------- 166 (308)
++++++.+.+. .++.||++|||++ .+.+... +........++++....+. +++.+.+.+. ..+|
T Consensus 81 ~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~----g~v~~~~~~~-~~iG~~~~~~~ 155 (305)
T PRK12921 81 LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGRERVLGGVVFISAQLNGD----GVVVQRADHR-LTFGEIPGQRS 155 (305)
T ss_pred HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCcccEEEEEEEEEEEECCC----eEEEEcCCCc-EEEcCCCCCcC
Confidence 99999999873 4578999999998 4444432 2111122234555444443 4555553322 2222
Q ss_pred ccHHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCcccccc--ccchHHHHHHHHHHHHHHHHHhcC
Q 021746 167 KWASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVV--EKEYRSEVSALIAELALAAAAEKG 244 (308)
Q Consensus 167 ~~a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L--~~~~~~~~~~lm~Ev~avA~a~~G 244 (308)
+..+++.+.|.++|+++.+. +||+..+|+|++||+++|++|+++ ++++|++ .+..+++++.+|+|+.+++++ .|
T Consensus 156 ~~~~~l~~~l~~~g~~~~~~--~di~~~~w~Kl~~N~~~n~l~a~~-~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a-~G 231 (305)
T PRK12921 156 ERTRAVRDALAGARLEVVLS--ENIRQDIWRKLLFNAVMNGMTALG-RATVGGILSRPGGRDLARALLRECLAVARA-EG 231 (305)
T ss_pred HHHHHHHHHHHhCCCCceec--HHHHHHHHHHHHHHHhHHHHHHHh-CCCHHHHHhCccHHHHHHHHHHHHHHHHHH-cC
Confidence 23467999999999998754 699999999999999999999999 8999998 344789999999999999997 79
Q ss_pred CCCChHHHHHHHHHhhh-cC-CCCc--------chhhhhhhhhHHhhcchHHHhCCCCCCCcchHHHHHHhcc
Q 021746 245 ITFDPAMEDRLCAYSRA-VA-NFPT--------AVKEFKWRNGWFYSLSEKASAEGKPDPCPLHTAWLKEIKV 307 (308)
Q Consensus 245 v~l~~~~~e~~~~~~~~-~~-~~~t--------~~~Ei~~~nG~vv~~~~~~~~~Gv~~p~P~~~~l~~~~~~ 307 (308)
++++++..++.+..... .+ ++++ .++|+|++||+++++ |+++|+ ++|+|+.+++.++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~sSm~~D~~~gr~tEid~i~G~vv~~---a~~~gv--~~P~~~~l~~~~~~ 299 (305)
T PRK12921 232 APLRDDVVEEIVKIFAGAPGDMKTSMLRDMEKGRPLEIDHLQGVLLRR---ARAHGI--PTPILDTVYALLKA 299 (305)
T ss_pred CCCChhHHHHHHHHHhccCCCCCcHHHHHHHcCCcccHHHHHHHHHHH---HHHhCC--CCcHHHHHHHHHHH
Confidence 99998877776554222 22 1111 156999999999988 567899 99999999998764
No 5
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=100.00 E-value=3.2e-32 Score=254.43 Aligned_cols=243 Identities=22% Similarity=0.252 Sum_probs=178.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCC-CC--------CC-------------CC-----CCCcEEEEecCccHH
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRG-EL--------VP-------------LD-----FEGPIFVCTRNDDLE 99 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg-~~--------~~-------------~~-----~~~~IlvatK~~dl~ 99 (308)
|+|+|||+|++|+++|... +|++| ++.|. ++ +. .+ ..+.|++|||.++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~~~~ 80 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAYQLP 80 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEecccccHH
Confidence 7899999999999999653 57887 88882 21 10 11 125699999999999
Q ss_pred HHHHhCCCC--CCCeEEEEecCCC-hhHHhhcCCCCCc--eeEEEEEeeccCCCCCCCceecCCCCCccccc------cc
Q 021746 100 AVLEAAPRS--RWNDLVFFQNGMI-EPWLESKGLKDAN--QVLAYFAVSKLGERPIDGKTDTNPEGLTAAYG------KW 168 (308)
Q Consensus 100 ~~l~~l~~~--~~t~IV~LQNGl~-~~~l~~~~~~~~~--~v~~~~~~~~~G~~~~dg~i~~~g~g~~~~~G------~~ 168 (308)
++++++.+. .++.||++|||++ .+.+... +.... ...++++..+.++ +++.+.+.+.. .+| +.
T Consensus 81 ~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~p----~~v~~~~~g~~-~ig~~~~~~~~ 154 (304)
T PRK06522 81 AALPSLAPLLGPDTPVLFLQNGVGHLEELAAY-IGPERVLGGVVTHAAELEGP----GVVRHTGGGRL-KIGEPDGESAA 154 (304)
T ss_pred HHHHHHhhhcCCCCEEEEecCCCCcHHHHHHh-cCcccEEEEEEEEeeEecCC----CEEEEcCCCCE-EEeCCCCCcHH
Confidence 999999984 4468999999998 5555432 12111 1123333333333 45555554432 122 22
Q ss_pred HHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccc--cchHHHHHHHHHHHHHHHHHhcCCC
Q 021746 169 ASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVE--KEYRSEVSALIAELALAAAAEKGIT 246 (308)
Q Consensus 169 a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~--~~~~~~~~~lm~Ev~avA~a~~Gv~ 246 (308)
.+.+.+.|+++|+++.+. +||+..+|+|+++||++|++||++ ++++|++. +..+++++.+|+|+.+++++ .|++
T Consensus 155 ~~~l~~~l~~~~~~~~~~--~di~~~~w~Kl~~N~~~n~l~al~-~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a-~G~~ 230 (304)
T PRK06522 155 AEALADLLNAAGLDVEWS--PDIRTEIWRKLWVNCVINPLTALL-GCTNGELLADPDYRALIRALMEEVAAVAEA-EGVH 230 (304)
T ss_pred HHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHhchhHHHHHh-CCChhHHhcCccHHHHHHHHHHHHHHHHHH-cCCC
Confidence 577999999999998754 699999999999999999999999 89999983 45789999999999999997 7999
Q ss_pred CChHHHHHHHHH-hhhcCC-CCc--------chhhhhhhhhHHhhcchHHHhCCCCCCCcchHHHHHHhcc
Q 021746 247 FDPAMEDRLCAY-SRAVAN-FPT--------AVKEFKWRNGWFYSLSEKASAEGKPDPCPLHTAWLKEIKV 307 (308)
Q Consensus 247 l~~~~~e~~~~~-~~~~~~-~~t--------~~~Ei~~~nG~vv~~~~~~~~~Gv~~p~P~~~~l~~~~~~ 307 (308)
++++...+.+.. .+..+. +.. .++|+|++|||++++ |+++|+ |||+|+.+|+.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~sSm~~D~~~gr~tEid~i~G~~v~~---a~~~gv--~~P~~~~l~~~~~~ 296 (304)
T PRK06522 231 LSVEEVREYVRQVIQKTAANTSSMLQDLEAGRPTEIDAIVGYVLRR---GRKHGI--PTPLNDALYGLLKA 296 (304)
T ss_pred CChHHHHHHHHHHhhccCCCCchHHHHHHcCCCcccchhccHHHHH---HHHcCC--CCcHHHHHHHHHHH
Confidence 986555444433 222222 111 145999999999988 668899 99999999998753
No 6
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=100.00 E-value=6.4e-32 Score=250.87 Aligned_cols=235 Identities=19% Similarity=0.209 Sum_probs=174.4
Q ss_pred hhHHHHHHhc--CCCcE-EecCCCCC--------------------C----CCC-----CCcEEEEecCccHHHHHHhCC
Q 021746 59 RVGTALKEMG--KGQDL-LVKRGELV--------------------P----LDF-----EGPIFVCTRNDDLEAVLEAAP 106 (308)
Q Consensus 59 ~vG~~~a~~~--~g~~v-~v~Rg~~~--------------------~----~~~-----~~~IlvatK~~dl~~~l~~l~ 106 (308)
+||++||.++ +|++| +++|++++ + .++ .+.||||||+++++++++.+.
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~~~~~~l~~l~ 80 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARGEQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAYQTEEAAALLL 80 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecHHHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccchhHHHHHHHhH
Confidence 5899999764 58888 99997531 1 011 146999999999999999998
Q ss_pred CC--CCCeEEEEecCCC-hhHHhhc-CCCCCceeEEEEEeeccCCCCCCCceecCCCCCccccc------ccHHHHHHHH
Q 021746 107 RS--RWNDLVFFQNGMI-EPWLESK-GLKDANQVLAYFAVSKLGERPIDGKTDTNPEGLTAAYG------KWASVVAERL 176 (308)
Q Consensus 107 ~~--~~t~IV~LQNGl~-~~~l~~~-~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~~~~~G------~~a~~l~~~L 176 (308)
+. .++.||++|||++ .+.+... +........++++....|+ +++.+.+.+.. .+| +..+++++.|
T Consensus 81 ~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~p----g~v~~~~~~~~-~iG~~~~~~~~~~~l~~~l 155 (293)
T TIGR00745 81 PLIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEP----GVVHHAGLGAT-KIGDYVGENEAVEALAELL 155 (293)
T ss_pred hhcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCC----cEEEEeccccE-EEecCCCchHHHHHHHHHH
Confidence 84 4579999999998 4445432 2111222233444333333 55666554432 222 2357799999
Q ss_pred HcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccc--cchHHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 021746 177 SVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVE--KEYRSEVSALIAELALAAAAEKGITFDPAMEDR 254 (308)
Q Consensus 177 ~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~--~~~~~~~~~lm~Ev~avA~a~~Gv~l~~~~~e~ 254 (308)
+++|+++++. +||+..+|+|+++||++|++|+++ ++++|++. +..+++++.+|+|+.+++++ .|++++++..++
T Consensus 156 ~~~~~~~~~~--~di~~~~w~Kl~~N~~~n~l~al~-~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a-~G~~~~~~~~~~ 231 (293)
T TIGR00745 156 NEAGIPAELH--GDILAAIWKKLLVNAAINPLTALL-DCKNGELLENPEARELLRRLMDEVVRVARA-EGVDLPDDEVEE 231 (293)
T ss_pred HhCCCCCEec--chHHHHHHHHHhheechhHHHHHH-CCccceeccChhHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHH
Confidence 9999998765 599999999999999999999999 89999993 34789999999999999997 799999877666
Q ss_pred HHHHhhhcCC--CCc--------chhhhhhhhhHHhhcchHHHhCCCCCCCcchHHHHHHhcc
Q 021746 255 LCAYSRAVAN--FPT--------AVKEFKWRNGWFYSLSEKASAEGKPDPCPLHTAWLKEIKV 307 (308)
Q Consensus 255 ~~~~~~~~~~--~~t--------~~~Ei~~~nG~vv~~~~~~~~~Gv~~p~P~~~~l~~~~~~ 307 (308)
.+.....+++ +.. +++|+|++|||++++ |+++|+ |||+|+.+|+.++.
T Consensus 232 ~~~~~~~~~~~~~sSm~~D~~~gr~tEid~i~G~~v~~---a~~~gv--~~P~~~~l~~~~~~ 289 (293)
T TIGR00745 232 LVRAVIRMTAENTSSMLQDLLRGRRTEIDAINGAVVRL---AEKLGI--DAPVNRTLYALLKA 289 (293)
T ss_pred HHHHHHhcCCCCCChHHHHHHcCCcchHHHhccHHHHH---HHHcCC--CCChHHHHHHHHHH
Confidence 6554433321 122 257999999999987 668899 99999999998864
No 7
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.95 E-value=8.8e-27 Score=221.98 Aligned_cols=239 Identities=22% Similarity=0.251 Sum_probs=171.5
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC---------------------------CCC-----CCCcEEEEec
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV---------------------------PLD-----FEGPIFVCTR 94 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~---------------------------~~~-----~~~~IlvatK 94 (308)
|+|+|||+|.||++||... +|++| ++.|+++. ..+ ..+.|++|||
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk 82 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTVK 82 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEec
Confidence 8999999999999999653 58887 88985421 001 1246999999
Q ss_pred CccHHHHHHhCCCC--CCCeEEEEecCCC-hhHHhhcCCCCCc--eeEEEEEeeccCCCCCCCceecCCCCCc-cccccc
Q 021746 95 NDDLEAVLEAAPRS--RWNDLVFFQNGMI-EPWLESKGLKDAN--QVLAYFAVSKLGERPIDGKTDTNPEGLT-AAYGKW 168 (308)
Q Consensus 95 ~~dl~~~l~~l~~~--~~t~IV~LQNGl~-~~~l~~~~~~~~~--~v~~~~~~~~~G~~~~dg~i~~~g~g~~-~~~G~~ 168 (308)
.+++.++++.+.+. .++.|+.+|||+. .+.++.. +.... ...++++....|+ |.+++.+.|.. ...+..
T Consensus 83 ~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~-~~~~~~~~g~~~~~~~~~~p----g~~~~~~~g~l~~~~~~~ 157 (341)
T PRK08229 83 SAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAA-LPGATVLAGMVPFNVISRGP----GAFHQGTSGALAIEASPA 157 (341)
T ss_pred CcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHh-CCCCcEEEEEEEEEEEecCC----ceEEecCCCceEecCCch
Confidence 99999999988773 3467889999998 4555433 12211 2233444434444 33443333332 122344
Q ss_pred HHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCcccccc--ccchHHHHHHHHHHHHHHHHHhcCCC
Q 021746 169 ASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVV--EKEYRSEVSALIAELALAAAAEKGIT 246 (308)
Q Consensus 169 a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L--~~~~~~~~~~lm~Ev~avA~a~~Gv~ 246 (308)
.+++.+.|+..|+++... +||...+|.|+++|+ +|++++++ ++++|.+ .+.+++++..+|.|+.+++++ .|++
T Consensus 158 ~~~~~~~l~~~g~~~~~~--~di~~~~w~Kl~~N~-~~~~~al~-~~~~~~l~~~~~~~~~~~~~~~E~~~va~a-~Gi~ 232 (341)
T PRK08229 158 LRPFAAAFARAGLPLVTH--EDMRAVQWAKLLLNL-NNAVNALS-GLPLKEELAQRSYRRCLALAQREALRVLKA-AGIR 232 (341)
T ss_pred HHHHHHHHHhcCCCceec--chhHHHHHHHHHHHh-ccHHHHHh-CCchHHHhcCchHHHHHHHHHHHHHHHHHH-cCCC
Confidence 578999999999998764 599999999999998 79999999 8999998 445789999999999999997 7997
Q ss_pred CC------h-----------HHHHHHHHHh-------------hhcCCCCcchhhhhhhhhHHhhcchHHHhCCCCCCCc
Q 021746 247 FD------P-----------AMEDRLCAYS-------------RAVANFPTAVKEFKWRNGWFYSLSEKASAEGKPDPCP 296 (308)
Q Consensus 247 l~------~-----------~~~e~~~~~~-------------~~~~~~~t~~~Ei~~~nG~vv~~~~~~~~~Gv~~p~P 296 (308)
++ + .+.+.+.... |...+| ++|+|++|||++++ |+++|+ ++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sm~~D~~~~r---~tEi~~i~G~i~~~---a~~~gv--~~P 304 (341)
T PRK08229 233 PARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLARSSMSDDLAAGR---ATEIDWINGEIVRL---AGRLGA--PAP 304 (341)
T ss_pred ccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCccCchHHHHHHcCC---cchHHHHhhHHHHH---HHHcCC--CCc
Confidence 42 2 2222221211 111233 55999999999977 668899 999
Q ss_pred chHHHHHHhc
Q 021746 297 LHTAWLKEIK 306 (308)
Q Consensus 297 ~~~~l~~~~~ 306 (308)
+++.+++.++
T Consensus 305 ~~~~~~~~~~ 314 (341)
T PRK08229 305 VNARLCALVH 314 (341)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 8
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=99.88 E-value=2e-22 Score=166.01 Aligned_cols=111 Identities=29% Similarity=0.431 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhHhhcCcccccc--ccchHHHHHHHHHHHHHHHHHhcCCCCChH-HHHHHHHHhhhcCCCC
Q 021746 190 AFQKQMLEKLIWISAFMLVGARHTGATVGVV--EKEYRSEVSALIAELALAAAAEKGITFDPA-MEDRLCAYSRAVANFP 266 (308)
Q Consensus 190 dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L--~~~~~~~~~~lm~Ev~avA~a~~Gv~l~~~-~~e~~~~~~~~~~~~~ 266 (308)
||+..+|+|++||+++|++|+++ ++++|++ .+..+++++.+|+|+.+++++ .|++++++ +.+.+..+++..+...
T Consensus 1 di~~~~w~Kl~~n~~~n~l~al~-~~~~g~l~~~~~~~~~~~~l~~E~~~va~a-~G~~l~~~~~~~~~~~~~~~~~~~~ 78 (125)
T PF08546_consen 1 DIQRERWEKLIFNAAINPLTALT-GCTNGELLENPEARELIRALMREVIAVARA-LGIPLDPDDLEEAIERLIRSTPDNR 78 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH-TS-HHHHHHSHHHHHHHHHHHHHHHHHHHH-TTSS--HHHHHHHHHHHHHCTTTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-CCcHHHHHhChhHHHHHHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHhcCCcc
Confidence 79999999999999999999999 8999999 355899999999999999997 79999976 6666667776665533
Q ss_pred cc---------hhhhhhhhhHHhhcchHHHhCCCCCCCcchHHHHHHhcc
Q 021746 267 TA---------VKEFKWRNGWFYSLSEKASAEGKPDPCPLHTAWLKEIKV 307 (308)
Q Consensus 267 t~---------~~Ei~~~nG~vv~~~~~~~~~Gv~~p~P~~~~l~~~~~~ 307 (308)
++ ++|+|++|||++++ |+++|+ ++|+|+.+|+.++.
T Consensus 79 ~SM~~D~~~gr~tEid~i~G~vv~~---a~~~gv--~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 79 SSMLQDIEAGRPTEIDYINGYVVRL---AKKHGV--PTPVNETIYALVKA 123 (125)
T ss_dssp -HHHHHHHTTB--SHHHTHHHHHHH---HHHTT-----HHHHHHHHHHHH
T ss_pred ccHHHHHHHcccccHHHHHHHHHHH---HHHHCC--CCcHHHHHHHHHHH
Confidence 32 67999999999987 678899 99999999998875
No 9
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.86 E-value=9.1e-21 Score=180.10 Aligned_cols=236 Identities=14% Similarity=0.094 Sum_probs=159.1
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC-------------C-CC-----------C-------CCCCcEEEEec
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE-------------L-VP-----------L-------DFEGPIFVCTR 94 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~-------------~-~~-----------~-------~~~~~IlvatK 94 (308)
|+|+|||+|++|++||.++ +|++| ++.|.+ . ++ . +..+.||+|||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 7899999999999999764 57887 999943 1 11 0 01256999999
Q ss_pred CccHHHHHHhCCC-C--CCCeEEEEecCCCh-------hHHhhcCCCCCceeEEEEEeeccCC-----CCCCCceecCCC
Q 021746 95 NDDLEAVLEAAPR-S--RWNDLVFFQNGMIE-------PWLESKGLKDANQVLAYFAVSKLGE-----RPIDGKTDTNPE 159 (308)
Q Consensus 95 ~~dl~~~l~~l~~-~--~~t~IV~LQNGl~~-------~~l~~~~~~~~~~v~~~~~~~~~G~-----~~~dg~i~~~g~ 159 (308)
+++++++++++.+ . .++.||++|||+.. +.+.+. + +...+.++ +.++. ...+..+.+.+.
T Consensus 81 s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~-~-~~~~~~~~---~Gp~~a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 81 TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEI-L-PNNPIAIL---SGPSFAKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHH-c-CCCceEee---cCCcHHHHHHcCCCcEEEEecC
Confidence 9999999999987 4 34579999999963 333322 1 11121111 12221 000111112111
Q ss_pred CCcccccccHHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHHHH
Q 021746 160 GLTAAYGKWASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAA 239 (308)
Q Consensus 160 g~~~~~G~~a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~avA 239 (308)
+. ...+.+++.|+..++++... +||+...|.|++.|+..+..++.. |...|+ +....+++.+++|+.+++
T Consensus 156 ~~-----~~~~~l~~~l~~~~~~~~~~--~Di~g~~~~k~~~N~ia~~~g~~~-g~~~~~--n~~~~l~~~~~~E~~~v~ 225 (326)
T PRK14620 156 NE-----TLGSSLISKLSNENLKIIYS--QDIIGVQIGAALKNIIAIACGIVL-GKNLGN--NAHAAVITKGMNEIKTLY 225 (326)
T ss_pred CH-----HHHHHHHHHHCCCCeEEEec--CcchhhhhHHHHHHHHHHHHHHHh-hcCCCc--hHHHHHHHHHHHHHHHHH
Confidence 11 23478999999999998764 599999999999999766666666 555443 446789999999999999
Q ss_pred HHhcCCCCChHHH------HHHHHHhhhcCCCC----------c--------chhhhhhhh--hHHhhcchHHHhCCCCC
Q 021746 240 AAEKGITFDPAME------DRLCAYSRAVANFP----------T--------AVKEFKWRN--GWFYSLSEKASAEGKPD 293 (308)
Q Consensus 240 ~a~~Gv~l~~~~~------e~~~~~~~~~~~~~----------t--------~~~Ei~~~n--G~vv~~~~~~~~~Gv~~ 293 (308)
++ .|..++++.. .+++..|....+|. . +.+|+|.+| |+++++ ++++|+
T Consensus 226 ~a-~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~---a~~~~i-- 299 (326)
T PRK14620 226 SA-KNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISL---AKKLNI-- 299 (326)
T ss_pred HH-hCCCCCcchhhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHH---HHHhCC--
Confidence 97 7987754333 23333332111111 1 145999999 699988 567899
Q ss_pred CCcchHHHHHHhc
Q 021746 294 PCPLHTAWLKEIK 306 (308)
Q Consensus 294 p~P~~~~l~~~~~ 306 (308)
++|+++.+|+-+.
T Consensus 300 ~~P~~~~l~~~~~ 312 (326)
T PRK14620 300 ELPICESIYNLLY 312 (326)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 10
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.48 E-value=2e-12 Score=124.15 Aligned_cols=237 Identities=16% Similarity=0.194 Sum_probs=153.0
Q ss_pred cccccEEEEccChhHHHHHHhc--CCCcEEecCCC--------------CCC------------CCC------CCcEEEE
Q 021746 47 TQVAPAAIVGGGRVGTALKEMG--KGQDLLVKRGE--------------LVP------------LDF------EGPIFVC 92 (308)
Q Consensus 47 ~~~m~i~IiG~G~vG~~~a~~~--~g~~v~v~Rg~--------------~~~------------~~~------~~~Ilva 92 (308)
..+|||+|||+|++|+++|... .|+++++.|.+ .++ .|. .+.||+|
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 4569999999999999999763 46666666632 011 011 2469999
Q ss_pred ecCccHHHHHHhCCCC--CCCeEEEEecCCCh-------hHHhhcCCCCCceeEEEEEeeccCCCCCCCceecCCCCC-c
Q 021746 93 TRNDDLEAVLEAAPRS--RWNDLVFFQNGMIE-------PWLESKGLKDANQVLAYFAVSKLGERPIDGKTDTNPEGL-T 162 (308)
Q Consensus 93 tK~~dl~~~l~~l~~~--~~t~IV~LQNGl~~-------~~l~~~~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~-~ 162 (308)
||.++++++++++.+. .++.||.+|||+.. +.+.+. ++. ..+ ...+.|+- ......|. +
T Consensus 85 vps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~-l~~-~~~---~~l~GP~~------a~ev~~g~~t 153 (341)
T PRK12439 85 VPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV-LPG-HPA---GILAGPNI------AREVAEGYAA 153 (341)
T ss_pred eCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH-cCC-CCe---EEEECCCH------HHHHHcCCCe
Confidence 9999999999999884 34579999999983 345432 111 121 12222333 11111111 1
Q ss_pred -cccc----ccHHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHH
Q 021746 163 -AAYG----KWASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELAL 237 (308)
Q Consensus 163 -~~~G----~~a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~a 237 (308)
.+.+ ..++.+.++|+..++++... +|+....|.|++.|+..|+.|.+. |...| .+....++...++|+..
T Consensus 154 ~~via~~~~~~~~~v~~lf~~~~~~v~~s--~Di~gve~~~alkNv~aia~G~~~-g~~~g--~n~~aali~~~~~E~~~ 228 (341)
T PRK12439 154 AAVLAMPDQHLATRLSPLFRTRRFRVYTT--DDVVGVEMAGALKNVFAIAVGMGY-SLGIG--ENTRAMVIARALREMTK 228 (341)
T ss_pred EEEEEeCCHHHHHHHHHHhCCCCEEEEEc--CchHHHHHHHHHHHHHHHHHHHHH-HhcCC--chHHHHHHHHHHHHHHH
Confidence 1111 23578999999999999865 599999999999999999988888 77555 34344688999999999
Q ss_pred HHHHhcCCCCC-----hHHHHHHHHHhhhcCCCCc----------chhhhhhhh-----h-----HHhhcchHHHhCCCC
Q 021746 238 AAAAEKGITFD-----PAMEDRLCAYSRAVANFPT----------AVKEFKWRN-----G-----WFYSLSEKASAEGKP 292 (308)
Q Consensus 238 vA~a~~Gv~l~-----~~~~e~~~~~~~~~~~~~t----------~~~Ei~~~n-----G-----~vv~~~~~~~~~Gv~ 292 (308)
++.+ .|.... .++-| ++-.|.+..+|.. ...|+..-+ | .++++ +++.++
T Consensus 229 ~~~a-~G~~~~t~~gl~G~GD-l~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~---~~~~~~- 302 (341)
T PRK12439 229 LGVA-MGGNPETFAGLAGMGD-LIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEF---ADEYGL- 302 (341)
T ss_pred HHHH-hCCCcccccccchhhh-hhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHH---HHHhCC-
Confidence 9997 687544 12223 2232222211111 133332222 2 23444 567899
Q ss_pred CCCcchHHHHHHhc
Q 021746 293 DPCPLHTAWLKEIK 306 (308)
Q Consensus 293 ~p~P~~~~l~~~~~ 306 (308)
.+|+.+.+|+-+-
T Consensus 303 -~~Pi~~~~~~il~ 315 (341)
T PRK12439 303 -NMPIAREVDAVIN 315 (341)
T ss_pred -CCCHHHHHHHHHh
Confidence 9999999998653
No 11
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.47 E-value=1.1e-12 Score=123.70 Aligned_cols=237 Identities=18% Similarity=0.122 Sum_probs=153.1
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC-----------------------C--CCC------CCCcEEEEecC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL-----------------------V--PLD------FEGPIFVCTRN 95 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~-----------------------~--~~~------~~~~IlvatK~ 95 (308)
|+|+|||+|.+|++++... +|++| ++.|+.. . ..+ ..+.|++|||.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 7999999999999999753 57787 8888531 0 011 12569999999
Q ss_pred ccHHHHHHhCCCC--CCCeEEEEecCCCh-------hHHhhcCCCCCceeEEEEEeeccCCCCCCCceecCCCCCccccc
Q 021746 96 DDLEAVLEAAPRS--RWNDLVFFQNGMIE-------PWLESKGLKDANQVLAYFAVSKLGERPIDGKTDTNPEGLTAAYG 166 (308)
Q Consensus 96 ~dl~~~l~~l~~~--~~t~IV~LQNGl~~-------~~l~~~~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~~~~~G 166 (308)
++++++++.+.+. .++.||.+|||+.. +.+.... +..... .++. .++.... ...+.+.....+
T Consensus 82 ~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~-~~~~~~-~~~~--~P~~~~~----~~~g~~~~~~~~ 153 (325)
T PRK00094 82 QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEEL-PDLAPI-AVLS--GPSFAKE----VARGLPTAVVIA 153 (325)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHc-CCCCce-EEEE--CccHHHH----HHcCCCcEEEEE
Confidence 9999999888873 45789999999973 2333321 110011 1221 2222100 001111111111
Q ss_pred ----ccHHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHHHHHHh
Q 021746 167 ----KWASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAAAAE 242 (308)
Q Consensus 167 ----~~a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~avA~a~ 242 (308)
+..+.+.+.|+..|+++... +|+....|.|++.|+..++.++.. +...+ .+....++...+.|+.+++++
T Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~~~--~d~~g~~~~k~~~N~~~~~~g~~~-~~k~~--~n~~~~~~~~~~~E~~~la~~- 227 (325)
T PRK00094 154 STDEELAERVQELFHSPYFRVYTN--TDVIGVELGGALKNVIAIAAGIAD-GLGLG--DNARAALITRGLAEITRLGVA- 227 (325)
T ss_pred eCCHHHHHHHHHHhCCCCEEEEec--CCcchhhHHHHHHHHHHHHHHHHH-HcCCC--ccHHHHHHHHHHHHHHHHHHH-
Confidence 23467899999999887654 599999999999999999988887 56543 344568899999999999997
Q ss_pred cCCCCChHHHHH-----HHHHhhhcCC------------CCc--------chhhhhhhhhHHhhcchHHHhCCCCCCCcc
Q 021746 243 KGITFDPAMEDR-----LCAYSRAVAN------------FPT--------AVKEFKWRNGWFYSLSEKASAEGKPDPCPL 297 (308)
Q Consensus 243 ~Gv~l~~~~~e~-----~~~~~~~~~~------------~~t--------~~~Ei~~~nG~vv~~~~~~~~~Gv~~p~P~ 297 (308)
.|++.. .+.+. ++..+.++.. +.. ...|...-++.++++ ++++|+ |+|+
T Consensus 228 ~G~d~~-~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~---a~~~~~--~~P~ 301 (325)
T PRK00094 228 LGANPE-TFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYEL---AKKLGV--EMPI 301 (325)
T ss_pred hCCChh-hhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHHHH---HHHhCC--CCCH
Confidence 697532 12221 1111111100 100 124667778899977 567899 9999
Q ss_pred hHHHHHHhc
Q 021746 298 HTAWLKEIK 306 (308)
Q Consensus 298 ~~~l~~~~~ 306 (308)
++.+++.+.
T Consensus 302 ~~~~~~~~~ 310 (325)
T PRK00094 302 TEAVYAVLY 310 (325)
T ss_pred HHHHHHHHc
Confidence 999998653
No 12
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=99.26 E-value=2.3e-12 Score=125.56 Aligned_cols=203 Identities=11% Similarity=0.126 Sum_probs=120.9
Q ss_pred ccEEEEccChhHH-HHHHhc--CCCcE-EecCCCC-C---------------CC---------------C---------C
Q 021746 50 APAAIVGGGRVGT-ALKEMG--KGQDL-LVKRGEL-V---------------PL---------------D---------F 85 (308)
Q Consensus 50 m~i~IiG~G~vG~-~~a~~~--~g~~v-~v~Rg~~-~---------------~~---------------~---------~ 85 (308)
|||+++|+|++|+ +++.+. .|++| +|.+... + +. + .
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 8999999999997 668764 46776 8886321 0 00 1 1
Q ss_pred CCcEEEEecCccHHHHHHhCCCC--CCC--------eEEEEecCCC-hhHHhhcC--CC-C-------CceeEEEEEeec
Q 021746 86 EGPIFVCTRNDDLEAVLEAAPRS--RWN--------DLVFFQNGMI-EPWLESKG--LK-D-------ANQVLAYFAVSK 144 (308)
Q Consensus 86 ~~~IlvatK~~dl~~~l~~l~~~--~~t--------~IV~LQNGl~-~~~l~~~~--~~-~-------~~~v~~~~~~~~ 144 (308)
++.|.++||...++.++..+.+. .++ .|+++|||+. ...+.... .- + .....+...+.+
T Consensus 81 ~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~V~~~~~~~~~~wi~~~~~f~~t~VDr 160 (381)
T PRK02318 81 ADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKHVLKALSEDEKAWLEEHVGFVDSAVDR 160 (381)
T ss_pred CCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHHHHHhCCHHHHHHHHhcCCCCCcHHhc
Confidence 13478888888877777766552 111 7999999998 33333221 00 0 001111222233
Q ss_pred cCCCCCCCceecCCCCC-cccccccHHHHHHHHHcCCC-----ceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCc---
Q 021746 145 LGERPIDGKTDTNPEGL-TAAYGKWASVVAERLSVGGL-----SCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGA--- 215 (308)
Q Consensus 145 ~G~~~~dg~i~~~g~g~-~~~~G~~a~~l~~~L~~aGI-----~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~--- 215 (308)
+++. ..+.+. .....+..+-+.+.++..|. .+.+ .+|+...+|+|+.+|+++|.++|++ |.
T Consensus 161 I~P~-------~~~~d~~~v~~E~f~~wviE~~~~~~~~p~~~~v~~--~~dv~~~~~~Kl~~ln~~ha~~A~~-g~l~G 230 (381)
T PRK02318 161 IVPA-------QKNEDPLDVTVEPFSEWIVDKTQFKGALPKIKGMEY--VDNLMPFIERKLFTVNTGHATTAYL-GYLKG 230 (381)
T ss_pred CCCC-------CCccCCcccccccceEEEEecccccCCCCCCCCcEE--ccCccHHHHHHHHhccHHHHHHHHH-HHHcC
Confidence 3331 001111 11111111223333332221 3444 4699999999999999999999999 78
Q ss_pred --ccccc--ccchHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHhhhcC
Q 021746 216 --TVGVV--EKEYRSEVSALIAELALAAAAEKGITFDPAMEDRLCAYSRAVA 263 (308)
Q Consensus 216 --tvG~L--~~~~~~~~~~lm~Ev~avA~a~~Gv~l~~~~~e~~~~~~~~~~ 263 (308)
+++++ +++.+.+++.+|+|+.+++.+..|++ ++++.+......+.++
T Consensus 231 ~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~g~~-~~~l~~y~~~~~~Rf~ 281 (381)
T PRK02318 231 YKTIREAILDPSIRAVVKGALEESGAVLIKKYGFD-KEEHAAYIEKILGRFE 281 (381)
T ss_pred cchHHHHHcCHHHHHHHHHHHHHHHhhcCCcCCcC-HHHHHHHHHHHHHHhC
Confidence 89997 45578999999999999986546854 4455555544444443
No 13
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.25 E-value=3e-12 Score=107.98 Aligned_cols=77 Identities=26% Similarity=0.310 Sum_probs=59.7
Q ss_pred EEEEccChhHHHHHHhc--CCCcE-EecCCCCCC-------------------------CC-----CCCcEEEEecCccH
Q 021746 52 AAIVGGGRVGTALKEMG--KGQDL-LVKRGELVP-------------------------LD-----FEGPIFVCTRNDDL 98 (308)
Q Consensus 52 i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~-------------------------~~-----~~~~IlvatK~~dl 98 (308)
|+|+|+|+||++||.++ .|++| ++.|+.+.+ .+ ..+.||||||++++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~~ 80 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQL 80 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGGH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccch
Confidence 79999999999999654 68888 999976210 01 12569999999999
Q ss_pred HHHHHhCCCC--CCCeEEEEecCCC-hhHHhhc
Q 021746 99 EAVLEAAPRS--RWNDLVFFQNGMI-EPWLESK 128 (308)
Q Consensus 99 ~~~l~~l~~~--~~t~IV~LQNGl~-~~~l~~~ 128 (308)
+++++.+.+. +++.||++||||+ .+.+.+.
T Consensus 81 ~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~ 113 (151)
T PF02558_consen 81 EQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEY 113 (151)
T ss_dssp HHHHHHHCTGEETTEEEEEESSSSSHHHHHHCH
T ss_pred HHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHH
Confidence 9999999994 4568999999999 5555433
No 14
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.16 E-value=6.3e-10 Score=105.96 Aligned_cols=185 Identities=18% Similarity=0.118 Sum_probs=123.5
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC-----------------------C-C-CC------CCCcEEEEec
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL-----------------------V-P-LD------FEGPIFVCTR 94 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~-----------------------~-~-~~------~~~~IlvatK 94 (308)
.|+|.|||+|++|+.++.+. +|++| ++.|... + . .+ ..+.|++|+|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 48999999999999999753 58887 8888431 0 0 01 1256999999
Q ss_pred CccHHHHHHhCCCCCCCeEEEEecCCChh-----HHhhc-CCCCCceeEEEEEeeccCCCCCCCceecCCCCC-cccc-c
Q 021746 95 NDDLEAVLEAAPRSRWNDLVFFQNGMIEP-----WLESK-GLKDANQVLAYFAVSKLGERPIDGKTDTNPEGL-TAAY-G 166 (308)
Q Consensus 95 ~~dl~~~l~~l~~~~~t~IV~LQNGl~~~-----~l~~~-~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~-~~~~-G 166 (308)
+++++++++.+++. ..++.++||+... .+... +......+ .++. .++... . ...+.+. .... +
T Consensus 84 ~~~~~~v~~~l~~~--~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~-~~~~--gP~~a~-~---~~~~~~~~~~~~~~ 154 (328)
T PRK14618 84 SKALRETLAGLPRA--LGYVSCAKGLAPDGGRLSELARVLEFLTQARV-AVLS--GPNHAE-E---IARFLPAATVVASP 154 (328)
T ss_pred hHHHHHHHHhcCcC--CEEEEEeeccccCCCccchHHHHHHHhcCCCe-EEEE--CccHHH-H---HHcCCCeEEEEEeC
Confidence 99999999887753 4789999998621 22211 00000111 1111 222210 0 0011111 1111 1
Q ss_pred --ccHHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHHHHHHhcC
Q 021746 167 --KWASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAAAAEKG 244 (308)
Q Consensus 167 --~~a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~avA~a~~G 244 (308)
+..+.+...|+..|+++.+. +|+....|.|++.|+..|.+|+.. +.+.+.- .....+...+.|..+++++ .|
T Consensus 155 ~~~~~~~v~~ll~~~~~~v~~~--~di~g~~~~~~lkN~~ai~~G~~~-~~k~~~n--~~~~~~~~~~~E~~~la~~-~G 228 (328)
T PRK14618 155 EPGLARRVQAAFSGPSFRVYTS--RDRVGVELGGALKNVIALAAGMVD-GLKLGDN--AKAALITRGLREMVRFGVA-LG 228 (328)
T ss_pred CHHHHHHHHHHhCCCcEEEEec--CCccchhhhHHHHHHHHHHHHHHH-HhCCCcc--HHHHHHHHHHHHHHHHHHH-hC
Confidence 22477899999999998764 599999999999999999999998 6766553 2357899999999999997 68
Q ss_pred CCCC
Q 021746 245 ITFD 248 (308)
Q Consensus 245 v~l~ 248 (308)
.+..
T Consensus 229 ~~~~ 232 (328)
T PRK14618 229 AEEA 232 (328)
T ss_pred CCcc
Confidence 7643
No 15
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.91 E-value=3.8e-08 Score=93.17 Aligned_cols=239 Identities=14% Similarity=0.102 Sum_probs=145.9
Q ss_pred cccccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCC----CCCCcEEEEecCccHHHHHHhCCC---CCCCeEEEE
Q 021746 47 TQVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPL----DFEGPIFVCTRNDDLEAVLEAAPR---SRWNDLVFF 116 (308)
Q Consensus 47 ~~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~----~~~~~IlvatK~~dl~~~l~~l~~---~~~t~IV~L 116 (308)
++.|+|.|||+|.+|+.+|... +|++| ++.|.+.-.. ...+.|++|++...++++++.+.+ ..++.+|..
T Consensus 2 ~~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~ 81 (308)
T PRK14619 2 TQPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA 81 (308)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 3569999999999999999753 58887 8888754321 123679999999999999988864 234678889
Q ss_pred ecCCChh-------HHhhcCCCCCceeEEEEEeeccCCCCCCCceecCCCCC-ccccc---ccHHHHHHHHHcCCCceee
Q 021746 117 QNGMIEP-------WLESKGLKDANQVLAYFAVSKLGERPIDGKTDTNPEGL-TAAYG---KWASVVAERLSVGGLSCKV 185 (308)
Q Consensus 117 QNGl~~~-------~l~~~~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~-~~~~G---~~a~~l~~~L~~aGI~~~v 185 (308)
.||+.+. .+..+ +..... +..+.++... + + ..+.+. ....| +..+.+.++|...|+.+..
T Consensus 82 s~gi~~~~~~~~s~~~~~~-~~~~~v----~~i~gp~~a~-e--i-~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~ 152 (308)
T PRK14619 82 TKGLDPETTRTPSQIWQAA-FPNHPV----VVLSGPNLSK-E--I-QQGLPAATVVASRDLAAAETVQQIFSSERFRVYT 152 (308)
T ss_pred CCcccCCCCcCHHHHHHHH-cCCCce----EEEECCCcHH-H--H-hcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEe
Confidence 9988622 22211 111211 1111122100 0 0 011011 11112 2346788999988887765
Q ss_pred cChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHHHHHHhcCCCCChHHHH-----HHHHHhh
Q 021746 186 LDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAAAAEKGITFDPAMED-----RLCAYSR 260 (308)
Q Consensus 186 ~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~avA~a~~Gv~l~~~~~e-----~~~~~~~ 260 (308)
.+|+...-|-|.+.|+..+..|... +... ..+..-..+...+.|..+++++ .|.+... +.+ .+...+.
T Consensus 153 --~~d~~G~~~~~alkNv~ai~~G~~~-~~~l--~~N~~~a~~~~~~~E~~~l~~~-~G~~~~t-~~~~~g~gd~~~t~~ 225 (308)
T PRK14619 153 --NSDPLGTELGGTLKNVIAIAAGVCD-GLQL--GTNAKAALVTRALPEMIRVGTH-LGAQTET-FYGLSGLGDLLATCT 225 (308)
T ss_pred --cCCchhhhhHHHHHHHHHHHHHHHH-HcCC--CccHHHHHHHHHHHHHHHHHHH-hCCCccc-cccccchhhhheeec
Confidence 3599999999999999988766544 4321 2344446788888999999997 6987442 222 1212222
Q ss_pred hcCCCCcc----------hhhhhh-hhh---------HHhhcchHHHhCCCCCCCcchHHHHHHhc
Q 021746 261 AVANFPTA----------VKEFKW-RNG---------WFYSLSEKASAEGKPDPCPLHTAWLKEIK 306 (308)
Q Consensus 261 ~~~~~~t~----------~~Ei~~-~nG---------~vv~~~~~~~~~Gv~~p~P~~~~l~~~~~ 306 (308)
.+..|... ..|+.. +.| .++++ +++.|+ +.|+.+.+|+-+.
T Consensus 226 ~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~---~~~~~~--~~Pl~~~v~~i~~ 286 (308)
T PRK14619 226 SPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQL---AQQQNI--AVPITEQVYRLLQ 286 (308)
T ss_pred CCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHH---HHHcCC--CCCHHHHHHHHHc
Confidence 22222111 122211 222 67766 567899 9999999998664
No 16
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.05 E-value=7.7e-05 Score=69.02 Aligned_cols=163 Identities=17% Similarity=0.141 Sum_probs=97.1
Q ss_pred ccccEEEEccChhHHHHHH-hc-CC----CcE-EecCCCC-CC----CC------CCCcEEEEecCccHHHHHHhCCCCC
Q 021746 48 QVAPAAIVGGGRVGTALKE-MG-KG----QDL-LVKRGEL-VP----LD------FEGPIFVCTRNDDLEAVLEAAPRSR 109 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~-~~-~g----~~v-~v~Rg~~-~~----~~------~~~~IlvatK~~dl~~~l~~l~~~~ 109 (308)
..|+|.|||.|.+|+.++. +. ++ ..+ ...|+.. .. .+ ..+.||+|||.+++.+++.++.+..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l 81 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTPFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYL 81 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCCeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhc
Confidence 3589999999999999995 32 22 224 5555432 11 11 1267999999999999999998742
Q ss_pred -CCeEEEEecCCChhHHhhcCCCCCceeEEEEEeeccCCCCCCCceecCCCCCcccc-c-----ccHHHHHHHHHcCCCc
Q 021746 110 -WNDLVFFQNGMIEPWLESKGLKDANQVLAYFAVSKLGERPIDGKTDTNPEGLTAAY-G-----KWASVVAERLSVGGLS 182 (308)
Q Consensus 110 -~t~IV~LQNGl~~~~l~~~~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~~~~~-G-----~~a~~l~~~L~~aGI~ 182 (308)
...||.+++|+..+.++.. ++....+ +. . .++. ....+.|.+..+ + ...+.+.++|+..|..
T Consensus 82 ~~~~iIS~~aGi~~~~l~~~-~~~~~~v-vr-~--mPn~------p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~ 150 (260)
T PTZ00431 82 GSKLLISICGGLNLKTLEEM-VGVEAKI-VR-V--MPNT------PSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGII 150 (260)
T ss_pred cCCEEEEEeCCccHHHHHHH-cCCCCeE-EE-E--CCCc------hhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcE
Confidence 3589999999996666543 1111111 11 1 2332 112222332211 1 1246688999999988
Q ss_pred eeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHHHHHHhcCCC
Q 021746 183 CKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAAAAEKGIT 246 (308)
Q Consensus 183 ~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~avA~a~~Gv~ 246 (308)
..+ + + + -|+.++++. |+ ....+..+|+.+.+.+.+ .|++
T Consensus 151 ~~v-~-E--------~-----~~d~~ta~~-gs--------gPA~~~~~~~al~~~~v~-~Gl~ 189 (260)
T PTZ00431 151 QEI-K-E--------K-----DMDIATAIS-GC--------GPAYVFLFIESLIDAGVK-NGLN 189 (260)
T ss_pred EEE-C-h--------H-----Hcchhhhhc-CC--------HHHHHHHHHHHHHHHHHH-cCCC
Confidence 765 2 1 1 345566776 44 234466666666666664 4633
No 17
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.56 E-value=0.00017 Score=66.43 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=59.1
Q ss_pred ccEEEEccChhHHHHHHh-c-CC---CcE-EecCCCC----------CC--CC------CCCcEEEEecCccHHHHHHhC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KG---QDL-LVKRGEL----------VP--LD------FEGPIFVCTRNDDLEAVLEAA 105 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g---~~v-~v~Rg~~----------~~--~~------~~~~IlvatK~~dl~~~l~~l 105 (308)
|+|.|||.|.+|+.++.. . .| +++ ++.|+.. +. .+ ..+.||+|||.+++.++++++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l 82 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVLSEL 82 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHH
Confidence 789999999999999964 2 35 455 7888631 11 11 125799999999999999999
Q ss_pred CCCCCCeEEEEecCCChhHHhh
Q 021746 106 PRSRWNDLVFFQNGMIEPWLES 127 (308)
Q Consensus 106 ~~~~~t~IV~LQNGl~~~~l~~ 127 (308)
.+..++.||.++||+..+.++.
T Consensus 83 ~~~~~~~vvs~~~gi~~~~l~~ 104 (267)
T PRK11880 83 KGQLDKLVVSIAAGVTLARLER 104 (267)
T ss_pred HhhcCCEEEEecCCCCHHHHHH
Confidence 8754568999999998665553
No 18
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.54 E-value=0.00012 Score=65.90 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=55.5
Q ss_pred ccEEEEc-cChhHHHHHHhc--CCCcE-EecCCCC---------------------CC-CC------CCCcEEEEecCcc
Q 021746 50 APAAIVG-GGRVGTALKEMG--KGQDL-LVKRGEL---------------------VP-LD------FEGPIFVCTRNDD 97 (308)
Q Consensus 50 m~i~IiG-~G~vG~~~a~~~--~g~~v-~v~Rg~~---------------------~~-~~------~~~~IlvatK~~d 97 (308)
|+|.||| .|.+|+.++... .|++| ++.|+.. .. .+ ..+.||+|+|.+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 7899997 899999999653 57777 7788641 00 01 1257999999999
Q ss_pred HHHHHHhCCCC-CCCeEEEEecCCCh
Q 021746 98 LEAVLEAAPRS-RWNDLVFFQNGMIE 122 (308)
Q Consensus 98 l~~~l~~l~~~-~~t~IV~LQNGl~~ 122 (308)
+.++++++.+. ..+.|+.++||+..
T Consensus 81 ~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 81 VLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHHHHHHHhccCCEEEEeccCcee
Confidence 99999888653 34689999999873
No 19
>PRK07680 late competence protein ComER; Validated
Probab=97.25 E-value=0.00054 Score=63.67 Aligned_cols=78 Identities=24% Similarity=0.337 Sum_probs=57.1
Q ss_pred ccEEEEccChhHHHHHHh-c-CC----CcE-EecCCCC--------CC-----CC------CCCcEEEEecCccHHHHHH
Q 021746 50 APAAIVGGGRVGTALKEM-G-KG----QDL-LVKRGEL--------VP-----LD------FEGPIFVCTRNDDLEAVLE 103 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g----~~v-~v~Rg~~--------~~-----~~------~~~~IlvatK~~dl~~~l~ 103 (308)
|+|.|||+|.+|+.+++. . .| .++ ++.|... .+ .+ ..+.||+|+|.+++.++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~ 80 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ 80 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH
Confidence 689999999999999953 2 34 245 7777531 11 11 1257999999999999999
Q ss_pred hCCCC--CCCeEEEEecCCChhHHhh
Q 021746 104 AAPRS--RWNDLVFFQNGMIEPWLES 127 (308)
Q Consensus 104 ~l~~~--~~t~IV~LQNGl~~~~l~~ 127 (308)
++.+. .++.||.++||+..+.+..
T Consensus 81 ~l~~~l~~~~~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 81 KLAPHLTDEHCLVSITSPISVEQLET 106 (273)
T ss_pred HHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 98774 3468999999998555543
No 20
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.08 E-value=0.0012 Score=61.60 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=57.9
Q ss_pred ccEEEEccChhHHHHHHh-c-CC----CcE-EecCCC-C--------CC-----CC------CCCcEEEEecCccHHHHH
Q 021746 50 APAAIVGGGRVGTALKEM-G-KG----QDL-LVKRGE-L--------VP-----LD------FEGPIFVCTRNDDLEAVL 102 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g----~~v-~v~Rg~-~--------~~-----~~------~~~~IlvatK~~dl~~~l 102 (308)
|+|.|||.|.+|+.++.. . .| +++ ++.|.. . .+ .+ ..+.||+|+|.+++.+++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl 81 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL 81 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence 689999999999999953 2 34 455 666642 1 11 11 125699999999999999
Q ss_pred HhCCCC--CCCeEEEEecCCChhHHhhc
Q 021746 103 EAAPRS--RWNDLVFFQNGMIEPWLESK 128 (308)
Q Consensus 103 ~~l~~~--~~t~IV~LQNGl~~~~l~~~ 128 (308)
+++.+. .+..||.++||+....|+..
T Consensus 82 ~~l~~~l~~~~~ivS~~aGi~~~~l~~~ 109 (277)
T PRK06928 82 KDCAPVLTPDRHVVSIAAGVSLDDLLEI 109 (277)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHH
Confidence 998763 34589999999996666543
No 21
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.93 E-value=0.0017 Score=60.58 Aligned_cols=80 Identities=10% Similarity=0.175 Sum_probs=58.3
Q ss_pred ccccEEEEccChhHHHHHHh-c-CC----CcE-EecCCC--CC-------C----CC------CCCcEEEEecCccHHHH
Q 021746 48 QVAPAAIVGGGRVGTALKEM-G-KG----QDL-LVKRGE--LV-------P----LD------FEGPIFVCTRNDDLEAV 101 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~-~-~g----~~v-~v~Rg~--~~-------~----~~------~~~~IlvatK~~dl~~~ 101 (308)
..|+|.|||.|.+|+.++.. . +| +++ +..|.. +. . .+ ..+.||+|+|.+++.++
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~v 81 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEA 81 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence 35899999999999999953 2 34 455 666642 11 1 01 12579999999999999
Q ss_pred HHhCCCC--CCCeEEEEecCCChhHHhh
Q 021746 102 LEAAPRS--RWNDLVFFQNGMIEPWLES 127 (308)
Q Consensus 102 l~~l~~~--~~t~IV~LQNGl~~~~l~~ 127 (308)
++.+.+. .++.||.+++|+..+.+.+
T Consensus 82 l~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 82 LIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 9998864 3468999999998665543
No 22
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.93 E-value=0.042 Score=51.35 Aligned_cols=157 Identities=24% Similarity=0.266 Sum_probs=93.4
Q ss_pred ccEEEEccChhHHHHH-Hhc-CC----CcE-EecCCCC--------CC----CC------CCCcEEEEecCccHHHHHHh
Q 021746 50 APAAIVGGGRVGTALK-EMG-KG----QDL-LVKRGEL--------VP----LD------FEGPIFVCTRNDDLEAVLEA 104 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a-~~~-~g----~~v-~v~Rg~~--------~~----~~------~~~~IlvatK~~dl~~~l~~ 104 (308)
|+|.+||+|.+|..+. ++. .| .++ +..|.+. ++ .+ ..+.||+|||.+++++++.+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~ 81 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSK 81 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHHHH
Confidence 7899999999999999 442 34 355 4444331 11 11 13679999999999999999
Q ss_pred CCC-CCCCeEEEEecCCChhHHhhc-CCCCCceeEEEEEeeccCCCCCCCceecCCCCCccccc------ccHHHHHHHH
Q 021746 105 APR-SRWNDLVFFQNGMIEPWLESK-GLKDANQVLAYFAVSKLGERPIDGKTDTNPEGLTAAYG------KWASVVAERL 176 (308)
Q Consensus 105 l~~-~~~t~IV~LQNGl~~~~l~~~-~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~~~~~G------~~a~~l~~~L 176 (308)
+.+ .....||.+-=|+.-..+++. +..+...+.+-.. ...|. |-+..+. +..+.+.++|
T Consensus 82 l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~-a~vg~------------g~t~i~~~~~~~~~~~~~v~~l~ 148 (266)
T COG0345 82 LKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTP-ALVGA------------GVTAISANANVSEEDKAFVEALL 148 (266)
T ss_pred hhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChH-HHHcC------------cceeeecCccCCHHHHHHHHHHH
Confidence 997 345689999999985555433 1011111111111 12222 2222111 2234577888
Q ss_pred HcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHHHHHHhcC
Q 021746 177 SVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAAAAEKG 244 (308)
Q Consensus 177 ~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~avA~a~~G 244 (308)
+.-|-.+.+. ++ -++.+|++. |. ....+.-+++.+.+.+.. .|
T Consensus 149 ~~~G~v~~v~--E~-------------~~da~Tais-GS--------gPAyv~~~iEal~~agv~-~G 191 (266)
T COG0345 149 SAVGKVVEVE--ES-------------LMDAVTALS-GS--------GPAYVFLFIEALADAGVR-LG 191 (266)
T ss_pred HhcCCeEEec--hH-------------HhhHHHHHh-cC--------CHHHHHHHHHHHHHHHHH-cC
Confidence 8889777653 22 256677777 43 233455566666666554 56
No 23
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.82 E-value=0.066 Score=50.03 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=94.8
Q ss_pred ccEEEEccChhHHHHHH-hc-CCC----cE-EecCCCC--------CC----CC------CCCcEEEEecCccHHHHHHh
Q 021746 50 APAAIVGGGRVGTALKE-MG-KGQ----DL-LVKRGEL--------VP----LD------FEGPIFVCTRNDDLEAVLEA 104 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~g~----~v-~v~Rg~~--------~~----~~------~~~~IlvatK~~dl~~~l~~ 104 (308)
|+|.|||.|.+|+.++. +. .|+ ++ ...|... .. .+ ..+.||+|+|.++++++++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~ 82 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVINQ 82 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHH
Confidence 78999999999999995 42 332 35 4554321 11 11 12579999999999999999
Q ss_pred CCCC--CCCeEEEEecCCChhHHhhcCCCCCceeEEEEEeeccCCCCCCCceecCCCCCccc-ccc-----cHHHHHHHH
Q 021746 105 APRS--RWNDLVFFQNGMIEPWLESKGLKDANQVLAYFAVSKLGERPIDGKTDTNPEGLTAA-YGK-----WASVVAERL 176 (308)
Q Consensus 105 l~~~--~~t~IV~LQNGl~~~~l~~~~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~~~~-~G~-----~a~~l~~~L 176 (308)
+.+. .+..||.+--|+.-+.++.. ++....+ .-. .|... ...+.|.+.. +++ ..+.+.++|
T Consensus 83 l~~~~~~~~lvISi~AGi~i~~l~~~-l~~~~~v--vR~--MPN~~------~~vg~g~t~~~~~~~~~~~~~~~v~~lf 151 (272)
T PRK12491 83 IKDQIKNDVIVVTIAAGKSIKSTENE-FDRKLKV--IRV--MPNTP------VLVGEGMSALCFNEMVTEKDIKEVLNIF 151 (272)
T ss_pred HHHhhcCCcEEEEeCCCCcHHHHHHh-cCCCCcE--EEE--CCChH------HHHcCceEEEEeCCCCCHHHHHHHHHHH
Confidence 8874 34689999999986666543 1111111 111 11110 0122222221 111 235577888
Q ss_pred HcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHHHHHHhcCCC
Q 021746 177 SVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAAAAEKGIT 246 (308)
Q Consensus 177 ~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~avA~a~~Gv~ 246 (308)
+.-|-... .+ ++ -|+.+++++ |+ ....+..+|+.+.+.+.+ .|.+
T Consensus 152 ~~~G~~~~-~~-E~-------------~~d~~tals-gs--------gPAf~~~~~eal~~a~v~-~Gl~ 196 (272)
T PRK12491 152 NIFGQTEV-VN-EK-------------LMDVVTSIS-GS--------SPAYVYMFIEAMADAAVL-GGMP 196 (272)
T ss_pred HcCCCEEE-Ec-HH-------------HhhhHHHhc-cC--------cHHHHHHHHHHHHHHHHH-cCCC
Confidence 88886543 33 22 567788888 54 234566677777777665 4633
No 24
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.78 E-value=0.0011 Score=51.23 Aligned_cols=69 Identities=22% Similarity=0.395 Sum_probs=48.7
Q ss_pred cEEEEccChhHHHHHH-hc-CC---CcE-Ee-cCCCC--------CC----C-C------CCCcEEEEecCccHHHHHHh
Q 021746 51 PAAIVGGGRVGTALKE-MG-KG---QDL-LV-KRGEL--------VP----L-D------FEGPIFVCTRNDDLEAVLEA 104 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~-~~-~g---~~v-~v-~Rg~~--------~~----~-~------~~~~IlvatK~~dl~~~l~~ 104 (308)
||.|||.|.+|..+++ +. +| +++ ++ .|... .+ . + ..+.||+|||.+++.+++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~ 80 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLSE 80 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHHH
Confidence 6899999999999995 32 56 677 46 56542 11 1 1 13679999999999999999
Q ss_pred CCC-CCCCeEEEEecC
Q 021746 105 APR-SRWNDLVFFQNG 119 (308)
Q Consensus 105 l~~-~~~t~IV~LQNG 119 (308)
++. ..+..||.+-||
T Consensus 81 i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 81 IPHLLKGKLVISIAAG 96 (96)
T ss_dssp HHHHHTTSEEEEESTT
T ss_pred HhhccCCCEEEEeCCC
Confidence 922 345688888876
No 25
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.75 E-value=0.088 Score=50.58 Aligned_cols=236 Identities=18% Similarity=0.101 Sum_probs=140.2
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC--------------CC-----C------C------CCCcEEEEecC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL--------------VP-----L------D------FEGPIFVCTRN 95 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~--------------~~-----~------~------~~~~IlvatK~ 95 (308)
|+|.|+|+|+=|..+|... .||+| +.+|.+. +| . | ..+.|++++.+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 7999999999999999764 57887 9998531 12 1 1 12569999999
Q ss_pred ccHHHHHHhCCCC--CCCeEEEEecCCC-------hhHHhhcCCCCCceeEEEEEeeccCCCCCCCceecCCCCC--ccc
Q 021746 96 DDLEAVLEAAPRS--RWNDLVFFQNGMI-------EPWLESKGLKDANQVLAYFAVSKLGERPIDGKTDTNPEGL--TAA 164 (308)
Q Consensus 96 ~dl~~~l~~l~~~--~~t~IV~LQNGl~-------~~~l~~~~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~--~~~ 164 (308)
.-+.++++++++. .+..+|.+-=|+. .+.+.+. ++... + .++ +.|.-.. + + ..+-.. +..
T Consensus 82 ~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~-l~~~~-~-~vL--SGPs~A~-E--V-a~g~pta~~va 152 (329)
T COG0240 82 QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE-LPDNP-I-AVL--SGPSFAK-E--V-AQGLPTAVVVA 152 (329)
T ss_pred HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH-cCCCe-E-EEE--ECccHHH-H--H-hcCCCcEEEEe
Confidence 9999999999763 3568888888885 2233322 11111 1 111 1122110 0 0 011111 111
Q ss_pred --ccccHHHHHHHHHcCCCceeecChhh---HHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHHHH
Q 021746 165 --YGKWASVVAERLSVGGLSCKVLDKEA---FQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAA 239 (308)
Q Consensus 165 --~G~~a~~l~~~L~~aGI~~~v~~~~d---I~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~avA 239 (308)
.-..+..+.+.|++--+.+... +| ++..=--|.++-.+...+-.+. -. .+....++..=+.|+...+
T Consensus 153 s~d~~~a~~v~~~f~~~~Frvy~~--~Dv~GveigGAlKNViAIA~Gi~dGlg-~G-----~NakaalitrGL~Em~rlg 224 (329)
T COG0240 153 SNDQEAAEKVQALFSSPYFRVYTS--TDVIGVEIGGALKNVIAIAAGIADGLG-LG-----DNAKAALITRGLAEMTRLG 224 (329)
T ss_pred cCCHHHHHHHHHHhCCCcEEEEec--CchhhhHHHHHHHHHHHHHHHHHHHhh-cC-----hhHHHHHHHhHHHHHHHHH
Confidence 1134577889999988887654 35 3444456887777666555543 11 2334577888899999998
Q ss_pred HHhcCCCCChHH-----HHHHHHHhhhcCCCCcc----------hhhhhhhhhHHhhc-------chHHHhCCCCCCCcc
Q 021746 240 AAEKGITFDPAM-----EDRLCAYSRAVANFPTA----------VKEFKWRNGWFYSL-------SEKASAEGKPDPCPL 297 (308)
Q Consensus 240 ~a~~Gv~l~~~~-----~e~~~~~~~~~~~~~t~----------~~Ei~~~nG~vv~~-------~~~~~~~Gv~~p~P~ 297 (308)
.+ .|-. |+.+ +-.++-.|.++.+|..+ +.|....+|.+++= -+-++++|+ .+|+
T Consensus 225 ~~-lG~~-~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i--~mPI 300 (329)
T COG0240 225 VA-LGAK-PETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGI--EMPI 300 (329)
T ss_pred HH-hCCC-cchhcccccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCC--CCCH
Confidence 86 6755 3311 12333344444443331 34555555554321 022567899 9999
Q ss_pred hHHHHHHhc
Q 021746 298 HTAWLKEIK 306 (308)
Q Consensus 298 ~~~l~~~~~ 306 (308)
.+.+|+-+.
T Consensus 301 ~~~Vy~vl~ 309 (329)
T COG0240 301 TEAVYRVLY 309 (329)
T ss_pred HHHHHHHHh
Confidence 999998764
No 26
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.70 E-value=0.001 Score=55.43 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=46.5
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE--EecCCCC--------CC------C----CCCCcEEEEecCccHHHHHHhC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL--LVKRGEL--------VP------L----DFEGPIFVCTRNDDLEAVLEAA 105 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v--~v~Rg~~--------~~------~----~~~~~IlvatK~~dl~~~l~~l 105 (308)
..|+|.|||+|+||..|+... +|+.+ +..|... ++ . +..+.|||||+.+.++++.+++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~L 88 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQL 88 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHH
Confidence 459999999999999999653 57775 5667531 11 0 1136799999999999999999
Q ss_pred CCC--C-CCeEEEEecCCC
Q 021746 106 PRS--R-WNDLVFFQNGMI 121 (308)
Q Consensus 106 ~~~--~-~t~IV~LQNGl~ 121 (308)
... + ...+|+=--|-.
T Consensus 89 a~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 89 AQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp HCC--S-TT-EEEES-SS-
T ss_pred HHhccCCCCcEEEECCCCC
Confidence 875 2 234555555543
No 27
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.45 E-value=0.073 Score=50.15 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=52.4
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC------------------------------CCCC------CCCcE
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL------------------------------VPLD------FEGPI 89 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~------------------------------~~~~------~~~~I 89 (308)
.++|+|||+|.+|+.++... +|++| ++.|.+. ...+ ..+.|
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 46899999999999999642 57776 7766331 0111 12569
Q ss_pred EEEecCcc--HHHHHHhCCCC--CCCeEEEEecCCChhHHh
Q 021746 90 FVCTRNDD--LEAVLEAAPRS--RWNDLVFFQNGMIEPWLE 126 (308)
Q Consensus 90 lvatK~~d--l~~~l~~l~~~--~~t~IV~LQNGl~~~~l~ 126 (308)
++|++.+. ..+++..+.+. .++.|+...+|+....+.
T Consensus 84 i~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~ 124 (311)
T PRK06130 84 IEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIA 124 (311)
T ss_pred EEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHH
Confidence 99999863 66777766552 234666899998744443
No 28
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.44 E-value=0.085 Score=49.32 Aligned_cols=219 Identities=16% Similarity=0.115 Sum_probs=105.3
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC-----------CCCC------CCCcEEEEecC-ccHHHHH---HhC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL-----------VPLD------FEGPIFVCTRN-DDLEAVL---EAA 105 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~-----------~~~~------~~~~IlvatK~-~dl~~~l---~~l 105 (308)
|+|.|||.|.+|+.++... .|+.| +..|... ...+ ..+.|++|+.. .++++++ +.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 7899999999999999643 47766 6667531 1011 12568999986 4566665 222
Q ss_pred CCC-CCCeEEEEecCCChh---HHhhcCCCCCceeEEEEEeeccCCCC--CCCceecCCCCCcccccccHHHHHHHHHcC
Q 021746 106 PRS-RWNDLVFFQNGMIEP---WLESKGLKDANQVLAYFAVSKLGERP--IDGKTDTNPEGLTAAYGKWASVVAERLSVG 179 (308)
Q Consensus 106 ~~~-~~t~IV~LQNGl~~~---~l~~~~~~~~~~v~~~~~~~~~G~~~--~dg~i~~~g~g~~~~~G~~a~~l~~~L~~a 179 (308)
.+. ....++.-.+..... .+.+. +..... .|+...-.|..+ ..+.....-+|.. +..+.+...|..-
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~-~~~~g~--~~~d~pv~g~~~~a~~g~l~i~~gg~~----~~~~~~~~~l~~~ 155 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAA-LKAKGI--EMLDAPVSGGEPKAIDGTLSVMVGGDK----AIFDKYYDLMKAM 155 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHH-HHHcCC--cEEEcCCCCCHHHHhhCcEEEEECCCH----HHHHHHHHHHHHh
Confidence 332 222344333334321 22111 000001 122211122110 1121111111111 1124455666665
Q ss_pred CCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccchHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH--
Q 021746 180 GLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKEYRSEVSALIAELALAAAAEKGITFDPAMEDRLCA-- 257 (308)
Q Consensus 180 GI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~~~~~~~~lm~Ev~avA~a~~Gv~l~~~~~e~~~~-- 257 (308)
|.+..... +.-....-|++-|..+... ..++.|...++++ .|++. +++.+ .+.
T Consensus 156 ~~~~~~~g--~~g~a~~~Kl~~n~~~~~~--------------------~~~~~Ea~~l~~~-~Gi~~-~~~~~-~l~~~ 210 (296)
T PRK11559 156 AGSVVHTG--DIGAGNVTKLANQVIVALN--------------------IAAMSEALVLATK-AGVNP-DLVYQ-AIRGG 210 (296)
T ss_pred cCCeEEeC--CcCHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH-cCCCH-HHHHH-HHhcC
Confidence 54443222 4456667787776533322 2455666666665 46442 22222 222
Q ss_pred -----Hhh----hcC--CCCc-chhhhhhh-hhHHhhcchHHHhCCCCCCCcchHHHHHHh
Q 021746 258 -----YSR----AVA--NFPT-AVKEFKWR-NGWFYSLSEKASAEGKPDPCPLHTAWLKEI 305 (308)
Q Consensus 258 -----~~~----~~~--~~~t-~~~Ei~~~-nG~vv~~~~~~~~~Gv~~p~P~~~~l~~~~ 305 (308)
..+ .+- .+.. ...|+-.- .+++++. +++.|+ +.|+.+.+++..
T Consensus 211 ~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~---a~~~g~--~~p~~~~~~~~~ 266 (296)
T PRK11559 211 LAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDT---SHGVGA--PLPLTAAVMEMM 266 (296)
T ss_pred cccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHH---HHHcCC--CChHHHHHHHHH
Confidence 011 111 1111 12355555 7778866 567899 999999888654
No 29
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.38 E-value=0.2 Score=47.20 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=48.8
Q ss_pred ccEEEEccChhHHHHHHh--cCCCcE-EecCCCC-----------CCCC-------C--CCcEEEEecCc-cHHHHHHhC
Q 021746 50 APAAIVGGGRVGTALKEM--GKGQDL-LVKRGEL-----------VPLD-------F--EGPIFVCTRND-DLEAVLEAA 105 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~~-----------~~~~-------~--~~~IlvatK~~-dl~~~l~~l 105 (308)
|+|.|||.|.+|.-++.. .+|+.+ +..|... ...+ . .+.|++|++.+ +++++++.+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i 80 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL 80 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence 689999999999999964 257776 6777431 1011 1 25789999998 888988877
Q ss_pred CCCC--CCeEEEEecCCC
Q 021746 106 PRSR--WNDLVFFQNGMI 121 (308)
Q Consensus 106 ~~~~--~t~IV~LQNGl~ 121 (308)
.+.. ++.+|-+-+.-.
T Consensus 81 ~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred hccCCCCCEEEECCCCCc
Confidence 6632 345555555543
No 30
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.30 E-value=0.014 Score=53.62 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=55.0
Q ss_pred ccEEEEccChhHHHHHHh-c-CCC----cE-Ee-cCCCC---------C--CCC------CCCcEEEEecCccHHHHHHh
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQ----DL-LV-KRGEL---------V--PLD------FEGPIFVCTRNDDLEAVLEA 104 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~----~v-~v-~Rg~~---------~--~~~------~~~~IlvatK~~dl~~~l~~ 104 (308)
|||.|||.|.+|+.++.. . +|+ ++ .+ .|... + ..+ ..+.||+|+|.+++++++..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~ 80 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE 80 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence 899999999999999953 2 455 55 33 55321 0 011 13579999999999999988
Q ss_pred CCCC--CCCeEEEEecCCChhHHh
Q 021746 105 APRS--RWNDLVFFQNGMIEPWLE 126 (308)
Q Consensus 105 l~~~--~~t~IV~LQNGl~~~~l~ 126 (308)
+.+. .++.||.+.+|+....+.
T Consensus 81 l~~~~~~~~~iIs~~~g~~~~~l~ 104 (266)
T PLN02688 81 LRPLLSKDKLLVSVAAGITLADLQ 104 (266)
T ss_pred HHhhcCCCCEEEEecCCCcHHHHH
Confidence 8663 346789999999855554
No 31
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.22 E-value=0.16 Score=46.61 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=53.4
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCc---E-EecCCCC--------CC-----CC------CCCcEEEEecCccHHHHHHh
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQD---L-LVKRGEL--------VP-----LD------FEGPIFVCTRNDDLEAVLEA 104 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~---v-~v~Rg~~--------~~-----~~------~~~~IlvatK~~dl~~~l~~ 104 (308)
|+|.|||.|.+|+.++.. . .|+. + +..|... .+ .+ ..+.||+|||.+++.+++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~ 80 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA 80 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence 689999999999999953 2 3422 3 4455321 11 11 12569999999999999988
Q ss_pred CCCCCCCeEEEEecCCChhHHhh
Q 021746 105 APRSRWNDLVFFQNGMIEPWLES 127 (308)
Q Consensus 105 l~~~~~t~IV~LQNGl~~~~l~~ 127 (308)
+....++.||.+--|+....++.
T Consensus 81 l~~~~~~~vis~~ag~~~~~l~~ 103 (258)
T PRK06476 81 LRFRPGQTVISVIAATDRAALLE 103 (258)
T ss_pred hccCCCCEEEEECCCCCHHHHHH
Confidence 74334568888888887555543
No 32
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.17 E-value=0.3 Score=47.25 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=104.6
Q ss_pred cEEEEccChhHHHHHHhc--CC--------CcE-EecCC-----CC-------------------CCC------C-----
Q 021746 51 PAAIVGGGRVGTALKEMG--KG--------QDL-LVKRG-----EL-------------------VPL------D----- 84 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g--------~~v-~v~Rg-----~~-------------------~~~------~----- 84 (308)
||.|||+|+.|..+|... .| ++| +..|. +. +|. |
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 689999999999999753 36 777 88882 21 121 1
Q ss_pred -CCCcEEEEecCccHHHHHHhCCCCC--CCeEEEEecCCChh---------HHhhcCCCCCceeEEEEEeeccCCCCCCC
Q 021746 85 -FEGPIFVCTRNDDLEAVLEAAPRSR--WNDLVFFQNGMIEP---------WLESKGLKDANQVLAYFAVSKLGERPIDG 152 (308)
Q Consensus 85 -~~~~IlvatK~~dl~~~l~~l~~~~--~t~IV~LQNGl~~~---------~l~~~~~~~~~~v~~~~~~~~~G~~~~dg 152 (308)
..+.|++||+...+.++++++.+.. +..+|.+-=|+... .+++. + +. . +.+. -|+..-..
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~-l-~~-~---~~~l--sGP~~A~E 152 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEE-L-GI-P---CGVL--SGANLANE 152 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHH-h-CC-C---eEEe--eCcchHHH
Confidence 1246899999999999999998742 34788888787522 22221 1 11 1 1122 23310000
Q ss_pred ceecCCC--CCcccc------cccHHHHHHHHHcCCCceeecChhhH---HHHHHHHHHHHHhhhhhhHhhcCccccccc
Q 021746 153 KTDTNPE--GLTAAY------GKWASVVAERLSVGGLSCKVLDKEAF---QKQMLEKLIWISAFMLVGARHTGATVGVVE 221 (308)
Q Consensus 153 ~i~~~g~--g~~~~~------G~~a~~l~~~L~~aGI~~~v~~~~dI---~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~ 221 (308)
+ ..+. ..+..+ -..+..+.++|+..-+.+... +|+ +..=--|.++-.+...+-. ...| .
T Consensus 153 -v-a~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s--~Dv~GvEl~galKNv~AIa~Gi~~G----l~~g--~ 222 (342)
T TIGR03376 153 -V-AKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVV--DDVAGVEIAGALKNVVAIAAGFVDG----LGWG--D 222 (342)
T ss_pred -H-HcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEc--CCcccchhhHHHHHHHHHHHHHHHh----cCCC--H
Confidence 0 0111 011111 234677899999888877654 354 3344456666655554443 4334 3
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCC
Q 021746 222 KEYRSEVSALIAELALAAAAEKGI 245 (308)
Q Consensus 222 ~~~~~~~~~lm~Ev~avA~a~~Gv 245 (308)
+....++..-+.|+...+.+ .|-
T Consensus 223 N~~aalitrgl~Em~~l~~~-~g~ 245 (342)
T TIGR03376 223 NAKAAVMRRGLLEMIKFARM-FFP 245 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCC
Confidence 44557899999999999997 454
No 33
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.03 E-value=0.61 Score=45.91 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=23.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
|+|.|||.|.+|..+|... +|+.| .+.|.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECC
Confidence 7899999999999999653 57777 77774
No 34
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.02 E-value=0.16 Score=49.62 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=106.8
Q ss_pred ccccEEEEccChhHHHHHHhc--CC-------CcE-EecCCCC------------------------CCC------CC--
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KG-------QDL-LVKRGEL------------------------VPL------DF-- 85 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g-------~~v-~v~Rg~~------------------------~~~------~~-- 85 (308)
+.|+|.|||+|+-|..+|... .| |+| +..|.+. +|. |.
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 348999999999999999753 34 677 8888763 111 11
Q ss_pred ----CCcEEEEecCccHHHHHHhCCC--CC--CCeEEEEecCCC---------hhHHhhcCCCCCceeEEEEEeeccCCC
Q 021746 86 ----EGPIFVCTRNDDLEAVLEAAPR--SR--WNDLVFFQNGMI---------EPWLESKGLKDANQVLAYFAVSKLGER 148 (308)
Q Consensus 86 ----~~~IlvatK~~dl~~~l~~l~~--~~--~t~IV~LQNGl~---------~~~l~~~~~~~~~~v~~~~~~~~~G~~ 148 (308)
.+.|+++|+...+.++++++.+ .. +..+|.+-=|+. .+.+.+. + +. . +.+. -|+.
T Consensus 90 av~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~-l-~~-~---~~~L--sGPs 161 (365)
T PTZ00345 90 AVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEE-L-GI-P---CCAL--SGAN 161 (365)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHH-h-CC-C---eEEE--ECCC
Confidence 2468999999999999999997 32 236777777775 1122221 1 11 1 1122 2331
Q ss_pred CCCCceecCCCCCccccc----ccHHHHHHHHHcCCCceeecChhh---HHHHHHHHHHHHHhhhhhhHhhcCccccccc
Q 021746 149 PIDGKTDTNPEGLTAAYG----KWASVVAERLSVGGLSCKVLDKEA---FQKQMLEKLIWISAFMLVGARHTGATVGVVE 221 (308)
Q Consensus 149 ~~dg~i~~~g~g~~~~~G----~~a~~l~~~L~~aGI~~~v~~~~d---I~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~ 221 (308)
.-.- + ..+.....+.+ ..+..+.++|+...+.+...+ | ++..=--|.++-.+.+.+-. ...|.
T Consensus 162 ~A~E-v-a~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~--Dv~GvEl~galKNviAIa~Gi~dG----l~~G~-- 231 (365)
T PTZ00345 162 VAND-V-AREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVP--DVIGVEVCGALKNIIALAAGFCDG----LGLGT-- 231 (365)
T ss_pred HHHH-H-HcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcC--CcccchhhHHHHHHHHHHHHHHHh----cCCCh--
Confidence 0000 0 01111111111 235778899998888876543 5 34445557776666554443 33332
Q ss_pred cchHHHHHHHHHHHHHHHHHhcC
Q 021746 222 KEYRSEVSALIAELALAAAAEKG 244 (308)
Q Consensus 222 ~~~~~~~~~lm~Ev~avA~a~~G 244 (308)
+....++..-+.|+...+.+ .|
T Consensus 232 N~kaalitrgl~Em~~l~~a-~g 253 (365)
T PTZ00345 232 NTKSAIIRIGLEEMKLFGKI-FF 253 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHH-hC
Confidence 44457799999999999987 55
No 35
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.01 E-value=0.011 Score=50.38 Aligned_cols=70 Identities=26% Similarity=0.345 Sum_probs=49.4
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCCC--------------CC-----------CC------CCCcEEEEecCc
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL--------------VP-----------LD------FEGPIFVCTRND 96 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~--------------~~-----------~~------~~~~IlvatK~~ 96 (308)
||+|+|+|..|..+|... .|++| +..|.+. ++ .| ..+.|+++|.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 689999999999999764 57888 9999641 11 11 125689999999
Q ss_pred cHHHHHHhCCCCC--CCeEEEEecCC
Q 021746 97 DLEAVLEAAPRSR--WNDLVFFQNGM 120 (308)
Q Consensus 97 dl~~~l~~l~~~~--~t~IV~LQNGl 120 (308)
.++++++++.+.. ...||.+-=|+
T Consensus 81 ~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 AHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred HHHHHHHHHhhccCCCCEEEEecCCc
Confidence 9999999999943 34666666666
No 36
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.99 E-value=0.19 Score=47.36 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=45.3
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCCCCC----------CC------CCCcEEEEecCc-cHHHHHHh---CC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGELVP----------LD------FEGPIFVCTRND-DLEAVLEA---AP 106 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~~~----------~~------~~~~IlvatK~~-dl~~~l~~---l~ 106 (308)
|+|.|||.|.+|+-+++. . +|+++ +..|....+ .+ ..+.||+|++.+ ++++++.. +.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 689999999999999964 2 57776 665643210 11 125699999987 67777633 12
Q ss_pred C-CCCCeEEEEecCCC
Q 021746 107 R-SRWNDLVFFQNGMI 121 (308)
Q Consensus 107 ~-~~~t~IV~LQNGl~ 121 (308)
+ .....++.-...+.
T Consensus 81 ~~~~~g~ivvd~sT~~ 96 (292)
T PRK15059 81 KASLKGKTIVDMSSIS 96 (292)
T ss_pred ccCCCCCEEEECCCCC
Confidence 2 22234555556665
No 37
>PLN02256 arogenate dehydrogenase
Probab=95.82 E-value=0.018 Score=54.79 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=51.4
Q ss_pred ccccccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC-----------CC------CCCCcEEEEecCccHHHHHHhC
Q 021746 46 TTQVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV-----------PL------DFEGPIFVCTRNDDLEAVLEAA 105 (308)
Q Consensus 46 ~~~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~-----------~~------~~~~~IlvatK~~dl~~~l~~l 105 (308)
.+..|+|+|||.|.+|+.|+... .|.++ .+.|.... .+ +..+.|++||+.+.+.++++.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l 112 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSL 112 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhh
Confidence 44568999999999999999642 46666 67765420 00 1136799999999999999998
Q ss_pred -CCC--CCCeEEEEec
Q 021746 106 -PRS--RWNDLVFFQN 118 (308)
Q Consensus 106 -~~~--~~t~IV~LQN 118 (308)
.+. +++.|+-+..
T Consensus 113 ~~~~l~~~~iviDv~S 128 (304)
T PLN02256 113 PLQRLKRSTLFVDVLS 128 (304)
T ss_pred hhhccCCCCEEEecCC
Confidence 342 3456666665
No 38
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.60 E-value=0.36 Score=45.46 Aligned_cols=162 Identities=17% Similarity=0.112 Sum_probs=93.2
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCC-----------C----C-----C--CCcEEEEecCccHHHHHH
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVP-----------L----D-----F--EGPIFVCTRNDDLEAVLE 103 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~-----------~----~-----~--~~~IlvatK~~dl~~~l~ 103 (308)
.|+|+|+|.|.||+.|++.. .|+.+ ++.|...-. . + . .+.|+|||.=..+.++++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~ 82 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLK 82 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHHH
Confidence 48999999999999999753 57777 788865421 0 0 1 267999999999999999
Q ss_pred hCCC-CCCCeEEEEecCCChhHHhhcCCCCCceeEEEEEeeccCC--C-C-CCC-ceecCCCCCcccccccHHHHHHHHH
Q 021746 104 AAPR-SRWNDLVFFQNGMIEPWLESKGLKDANQVLAYFAVSKLGE--R-P-IDG-KTDTNPEGLTAAYGKWASVVAERLS 177 (308)
Q Consensus 104 ~l~~-~~~t~IV~LQNGl~~~~l~~~~~~~~~~v~~~~~~~~~G~--~-~-~dg-~i~~~g~g~~~~~G~~a~~l~~~L~ 177 (308)
.+.| .....+|.=+-..=.+.++.........+-+..+-..-|. . . ..+ ++..++...+. -++...+.+.|.
T Consensus 83 ~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~--~~~~~~~~~~~~ 160 (279)
T COG0287 83 ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTE--KEWVEEVKRLWE 160 (279)
T ss_pred HhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCC--HHHHHHHHHHHH
Confidence 9997 3334455433333222221110000000001111111122 0 0 011 11222211111 235678889999
Q ss_pred cCCCceeecChh--hHHHHHHHHHHHHHhhhhhhHhh
Q 021746 178 VGGLSCKVLDKE--AFQKQMLEKLIWISAFMLVGARH 212 (308)
Q Consensus 178 ~aGI~~~v~~~~--dI~~~~WeKlv~N~a~N~ltAl~ 212 (308)
..|-.+...+.+ |-..+.-.=|-..++++...++.
T Consensus 161 ~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~ 197 (279)
T COG0287 161 ALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALA 197 (279)
T ss_pred HcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 989776665544 66666777788888888777776
No 39
>PLN02712 arogenate dehydrogenase
Probab=95.48 E-value=0.022 Score=59.80 Aligned_cols=77 Identities=23% Similarity=0.262 Sum_probs=56.6
Q ss_pred CCCcccchhhcccccccccccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC-----------CC------CCCCcEE
Q 021746 31 AKPTPVSAFAMASFTTTQVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV-----------PL------DFEGPIF 90 (308)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~-----------~~------~~~~~Il 90 (308)
+.|+.+.....+.......|+|.|||.|.||+.|+... .|++| .+.|.... .+ +..+.|+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVI 430 (667)
T PLN02712 351 AQKYEYNAQVSGCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVIL 430 (667)
T ss_pred cCCCCccchhhhccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEE
Confidence 56777777777766666779999999999999999642 46666 66775320 00 1136799
Q ss_pred EEecCccHHHHHHhCCC
Q 021746 91 VCTRNDDLEAVLEAAPR 107 (308)
Q Consensus 91 vatK~~dl~~~l~~l~~ 107 (308)
+||+.....++++++.+
T Consensus 431 LavP~~~~~~vi~~l~~ 447 (667)
T PLN02712 431 LCTSILSTEKVLKSLPF 447 (667)
T ss_pred ECCChHHHHHHHHHHHH
Confidence 99999999999988765
No 40
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=95.44 E-value=0.019 Score=51.69 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=52.6
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcEEec-CCCCC----------C-------CC---CCCcEEEEecCccHHHHHHhC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDLLVK-RGELV----------P-------LD---FEGPIFVCTRNDDLEAVLEAA 105 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v~v~-Rg~~~----------~-------~~---~~~~IlvatK~~dl~~~l~~l 105 (308)
+|++.|+|.|.||+.++++. .||+|.|+ |...- + .| ..+.||++++-+...++++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l 80 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL 80 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence 38899999999999999763 58998555 54421 0 01 125689999999999999888
Q ss_pred CCCC-CCeEEEEecCC
Q 021746 106 PRSR-WNDLVFFQNGM 120 (308)
Q Consensus 106 ~~~~-~t~IV~LQNGl 120 (308)
.... .+.||-.-|-+
T Consensus 81 ~~~~~~KIvID~tnp~ 96 (211)
T COG2085 81 RDALGGKIVIDATNPI 96 (211)
T ss_pred HHHhCCeEEEecCCCc
Confidence 8754 46777766664
No 41
>PLN02712 arogenate dehydrogenase
Probab=95.40 E-value=0.04 Score=57.90 Aligned_cols=59 Identities=27% Similarity=0.357 Sum_probs=43.8
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC------C----C-------CCCCcEEEEecCccHHHHHHhCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV------P----L-------DFEGPIFVCTRNDDLEAVLEAAP 106 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~------~----~-------~~~~~IlvatK~~dl~~~l~~l~ 106 (308)
..|+|.|||.|.||+.|+... .|+.| .+.|.... . . ...+.|++||+..++.+++++++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~ 129 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP 129 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence 449999999999999999642 46666 66665311 0 0 11367999999999999999886
No 42
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.21 E-value=0.017 Score=53.95 Aligned_cols=74 Identities=22% Similarity=0.112 Sum_probs=51.7
Q ss_pred ccEEEEccChhHHHHHHh--cCCCcE-EecCCCC----------C---CCC-----CCCcEEEEecCccHHHHHHhCCCC
Q 021746 50 APAAIVGGGRVGTALKEM--GKGQDL-LVKRGEL----------V---PLD-----FEGPIFVCTRNDDLEAVLEAAPRS 108 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~~----------~---~~~-----~~~~IlvatK~~dl~~~l~~l~~~ 108 (308)
|+|.|||.|.+|+.++.. .+|+.| .+.|... . ..+ ..+.|++|++.+...++++.+.+.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~ 80 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA 80 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence 789999999999999964 257776 7777532 0 011 125799999999888888888764
Q ss_pred -CCCeEEEEecCCChh
Q 021746 109 -RWNDLVFFQNGMIEP 123 (308)
Q Consensus 109 -~~t~IV~LQNGl~~~ 123 (308)
....+|.-..++-..
T Consensus 81 l~~~~ii~d~~Svk~~ 96 (279)
T PRK07417 81 LPPEAIVTDVGSVKAP 96 (279)
T ss_pred CCCCcEEEeCcchHHH
Confidence 234566555666533
No 43
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.13 E-value=0.73 Score=43.35 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=38.8
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC-----------CCCC------CCCcEEEEecCc-cHHHHHHh
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL-----------VPLD------FEGPIFVCTRND-DLEAVLEA 104 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~-----------~~~~------~~~~IlvatK~~-dl~~~l~~ 104 (308)
++|.|||.|.+|+.++.. . +|+.| ++.|... ...+ ..+.|++|++++ ++++++..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~ 77 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFG 77 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcC
Confidence 489999999999999964 2 57776 7777532 1111 125689999997 47878653
No 44
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.09 E-value=0.032 Score=49.91 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=39.9
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcEEecCCCCCCCCCCCcEEEEecCccHHHHHHhCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDLLVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPR 107 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~ 107 (308)
|+|+|||+ |++|.+|+++. +|+.|.+ + + .+.|++||.-....++++.+.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-~------~-~DlVilavPv~~~~~~i~~~~~ 53 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-K------K-ADHAFLSVPIDAALNYIESYDN 53 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-C------C-CCEEEEeCCHHHHHHHHHHhCC
Confidence 78999999 99999999864 5777632 1 1 3689999999999999987653
No 45
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.78 E-value=0.045 Score=51.60 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=52.0
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC---------C---CC--------CCCCcEEEEecCccHHHHHHhCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL---------V---PL--------DFEGPIFVCTRNDDLEAVLEAAP 106 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~---------~---~~--------~~~~~IlvatK~~dl~~~l~~l~ 106 (308)
|+|.|||.|.+|+.++... +|++| +..|... . .+ ...+.|++|++...++++++.+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~ 80 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA 80 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence 7899999999999999643 57777 7777532 0 00 11256999999999999998887
Q ss_pred CC--CCCeEEEEecCCC
Q 021746 107 RS--RWNDLVFFQNGMI 121 (308)
Q Consensus 107 ~~--~~t~IV~LQNGl~ 121 (308)
+. .++.||-.-|+.-
T Consensus 81 ~~l~~g~ivid~st~~~ 97 (298)
T TIGR00872 81 PTLEKGDIVIDGGNSYY 97 (298)
T ss_pred hhCCCCCEEEECCCCCc
Confidence 74 3456776667753
No 46
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.51 E-value=0.064 Score=48.56 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=55.7
Q ss_pred cccEEEEccChhHHHHHH-hc-CCC---c-E-EecCCC--CC-------C----CC------CCCcEEEEecCccHHHHH
Q 021746 49 VAPAAIVGGGRVGTALKE-MG-KGQ---D-L-LVKRGE--LV-------P----LD------FEGPIFVCTRNDDLEAVL 102 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~-~~-~g~---~-v-~v~Rg~--~~-------~----~~------~~~~IlvatK~~dl~~~l 102 (308)
.|||.|||+|.+|..++. +. +|. . + .+.|.. .. . .+ ..+.|++||+.+...+++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~ 83 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELL 83 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHHHHH
Confidence 489999999999999985 32 331 1 4 445532 11 1 11 125799999999999999
Q ss_pred HhCCCC-CCCeEEEEecCCChhHHhh
Q 021746 103 EAAPRS-RWNDLVFFQNGMIEPWLES 127 (308)
Q Consensus 103 ~~l~~~-~~t~IV~LQNGl~~~~l~~ 127 (308)
+++.+. .+..||.+-.|+....++.
T Consensus 84 ~~l~~~~~~~~vis~~~gi~~~~l~~ 109 (245)
T PRK07634 84 AELSPLLSNQLVVTVAAGIGPSYLEE 109 (245)
T ss_pred HHHHhhccCCEEEEECCCCCHHHHHH
Confidence 988763 3468999999998666654
No 47
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.45 E-value=0.052 Score=50.38 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=41.4
Q ss_pred ccEEEEccChhHHHHHHh-c-CCC--cE-EecCCCC---------C--C-CC-----CCCcEEEEecCccHHHHHHhCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQ--DL-LVKRGEL---------V--P-LD-----FEGPIFVCTRNDDLEAVLEAAPR 107 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~--~v-~v~Rg~~---------~--~-~~-----~~~~IlvatK~~dl~~~l~~l~~ 107 (308)
|+|.|||.|.+|+.++.. . +|+ .+ .+.|... . . .+ ..+.|++||+.+.+.+++.++.+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aD~Vilavp~~~~~~~~~~l~~ 80 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELKKCDVIFLAIPVDAIIEILPKLLD 80 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHhcCCEEEEeCcHHHHHHHHHHHhc
Confidence 689999999999999954 2 454 34 4555321 0 0 01 13679999999999999998877
No 48
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.39 E-value=0.37 Score=44.79 Aligned_cols=78 Identities=12% Similarity=0.205 Sum_probs=50.4
Q ss_pred cccEEEEccChhHHHHHHh--cCCCcE-EecCCCC---------------------------------C--CCCC-----
Q 021746 49 VAPAAIVGGGRVGTALKEM--GKGQDL-LVKRGEL---------------------------------V--PLDF----- 85 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~~---------------------------------~--~~~~----- 85 (308)
+++|+|||+|.+|+.++.. .+|+.| ++.+... + ..+.
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD 82 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 3579999999999999964 256666 6764221 0 0111
Q ss_pred CCcEEEEecCccH--HHHHHhCCCC--CCCeEEEEecCCChhHHh
Q 021746 86 EGPIFVCTRNDDL--EAVLEAAPRS--RWNDLVFFQNGMIEPWLE 126 (308)
Q Consensus 86 ~~~IlvatK~~dl--~~~l~~l~~~--~~t~IV~LQNGl~~~~l~ 126 (308)
.+.|++|++.+.- .++++++.+. +++.|+...+|+....+.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la 127 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELA 127 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 2568999987533 4777776663 345666888898744443
No 49
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.20 E-value=0.3 Score=47.07 Aligned_cols=77 Identities=21% Similarity=0.187 Sum_probs=50.2
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcEEe-cCC-CCC---------C-CC------CCCcEEEEecCccHHHHH-HhCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDLLV-KRG-ELV---------P-LD------FEGPIFVCTRNDDLEAVL-EAAPR 107 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v~v-~Rg-~~~---------~-~~------~~~~IlvatK~~dl~~~l-~~l~~ 107 (308)
.++|.|||.|.+|..++..+ .|.+|.+ .|. ... . .+ ..+.|++|++.....+++ +++.+
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~ 96 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEEIEP 96 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHh
Confidence 47899999999999999542 5767633 343 211 0 11 125799999988778887 66666
Q ss_pred CC-CCeEEEEecCCChhHH
Q 021746 108 SR-WNDLVFFQNGMIEPWL 125 (308)
Q Consensus 108 ~~-~t~IV~LQNGl~~~~l 125 (308)
.. ...+|.+--|..-...
T Consensus 97 ~Lk~g~iL~~a~G~~i~~~ 115 (330)
T PRK05479 97 NLKEGAALAFAHGFNIHFG 115 (330)
T ss_pred cCCCCCEEEECCCCChhhc
Confidence 42 2345577777764444
No 50
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.19 E-value=0.094 Score=51.23 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=51.4
Q ss_pred ccccEEEEc-cChhHHHHHHh--cCCCcE-EecCCCCCCC----CCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecC
Q 021746 48 QVAPAAIVG-GGRVGTALKEM--GKGQDL-LVKRGELVPL----DFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNG 119 (308)
Q Consensus 48 ~~m~i~IiG-~G~vG~~~a~~--~~g~~v-~v~Rg~~~~~----~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNG 119 (308)
..++|+||| .|.+|+.|+.. .+|++| ++.|...-.. ...+.|++||......++++.+.+ .+..-+++-+|
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~ 175 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLT 175 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECC
Confidence 347999999 99999999964 257877 7887532110 113679999999999999988877 33334445555
Q ss_pred CC
Q 021746 120 MI 121 (308)
Q Consensus 120 l~ 121 (308)
=.
T Consensus 176 Sv 177 (374)
T PRK11199 176 SV 177 (374)
T ss_pred Cc
Confidence 43
No 51
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.61 E-value=0.1 Score=52.03 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=49.0
Q ss_pred ccEEEEc-cChhHHHHHHhc--CCCcE-EecCCCCC------------CCC------CCCcEEEEecCccHHHHHHhCCC
Q 021746 50 APAAIVG-GGRVGTALKEMG--KGQDL-LVKRGELV------------PLD------FEGPIFVCTRNDDLEAVLEAAPR 107 (308)
Q Consensus 50 m~i~IiG-~G~vG~~~a~~~--~g~~v-~v~Rg~~~------------~~~------~~~~IlvatK~~dl~~~l~~l~~ 107 (308)
|+|.||| .|.+|+.++... .|++| ++.|...- ..+ ..+.|++||+.+.+.++++++.+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~ 80 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAP 80 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHh
Confidence 7899998 799999999653 57776 77886421 011 12578999999999999998877
Q ss_pred C--CCCeEEEEec
Q 021746 108 S--RWNDLVFFQN 118 (308)
Q Consensus 108 ~--~~t~IV~LQN 118 (308)
. .++.|+-+.+
T Consensus 81 ~l~~~~iViDvsS 93 (437)
T PRK08655 81 HVKEGSLLMDVTS 93 (437)
T ss_pred hCCCCCEEEEccc
Confidence 4 2345555554
No 52
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.83 E-value=0.27 Score=44.64 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=47.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC-----C---------CC-----------C--CCcEEEEecCccHH
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV-----P---------LD-----------F--EGPIFVCTRNDDLE 99 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~-----~---------~~-----------~--~~~IlvatK~~dl~ 99 (308)
|+++|+|+|++|..+++.+ .||+| +|-+.+.. . .| . .+.++++|.++...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N 80 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVN 80 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHH
Confidence 7899999999999999764 47776 88886521 0 00 1 13467777777776
Q ss_pred HHHHhCCC---CCCCeEEEEecCCC
Q 021746 100 AVLEAAPR---SRWNDLVFFQNGMI 121 (308)
Q Consensus 100 ~~l~~l~~---~~~t~IV~LQNGl~ 121 (308)
.++..+.- ...+.++-.+|-.-
T Consensus 81 ~i~~~la~~~~gv~~viar~~~~~~ 105 (225)
T COG0569 81 SVLALLALKEFGVPRVIARARNPEH 105 (225)
T ss_pred HHHHHHHHHhcCCCcEEEEecCHHH
Confidence 66655543 23457777777643
No 53
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=92.56 E-value=9.6 Score=36.09 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=47.3
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCC------------CCC------CCcEEEEecCc-cHHHHHHh---
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVP------------LDF------EGPIFVCTRND-DLEAVLEA--- 104 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~------------~~~------~~~IlvatK~~-dl~~~l~~--- 104 (308)
|+|.+||.|.+|.-+++.+ +|+.| +..|...-+ .++ .+.||.|+.++ ++.+++-.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 6899999999999999653 68887 777764321 011 25688898884 88888743
Q ss_pred CCC-CCCCeEEEEecCCC
Q 021746 105 APR-SRWNDLVFFQNGMI 121 (308)
Q Consensus 105 l~~-~~~t~IV~LQNGl~ 121 (308)
+.. ...-.++.-.+-+.
T Consensus 81 ~~~~~~~G~i~IDmSTis 98 (286)
T COG2084 81 LLEGLKPGAIVIDMSTIS 98 (286)
T ss_pred hhhcCCCCCEEEECCCCC
Confidence 222 12235555555555
No 54
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.30 E-value=0.21 Score=47.17 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=48.3
Q ss_pred ccEEEEccChhHHHHHHhc--CCC--cE-EecCCCC---------C----CCC------CCCcEEEEecCccHHHHHHhC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQ--DL-LVKRGEL---------V----PLD------FEGPIFVCTRNDDLEAVLEAA 105 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~--~v-~v~Rg~~---------~----~~~------~~~~IlvatK~~dl~~~l~~l 105 (308)
++|+|||.|.+|+.++... .|. .| ++.|.+. . ..+ ..+.|++||+.+...++++.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l 86 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAEI 86 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence 7899999999999999642 353 45 7777531 0 011 125799999999888888877
Q ss_pred CCCC-CCeEEEEecCCC
Q 021746 106 PRSR-WNDLVFFQNGMI 121 (308)
Q Consensus 106 ~~~~-~t~IV~LQNGl~ 121 (308)
.+.. ...+|....++-
T Consensus 87 ~~~l~~~~iv~dvgs~k 103 (307)
T PRK07502 87 APHLKPGAIVTDVGSVK 103 (307)
T ss_pred HhhCCCCCEEEeCccch
Confidence 6632 234555555554
No 55
>PRK06545 prephenate dehydrogenase; Validated
Probab=92.23 E-value=0.24 Score=47.98 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=50.5
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCCCC-----------CCC----------CCCcEEEEecCccHHHHHHhC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGELV-----------PLD----------FEGPIFVCTRNDDLEAVLEAA 105 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~~-----------~~~----------~~~~IlvatK~~dl~~~l~~l 105 (308)
.+|.|||.|.||+.++.. . +|+++ ++.|...- ..+ ..+.|++||+...+.++++++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l 80 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAEL 80 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence 368999999999999954 2 57776 77775421 110 125799999999999999998
Q ss_pred CC--CCCCeEEEEecCCC
Q 021746 106 PR--SRWNDLVFFQNGMI 121 (308)
Q Consensus 106 ~~--~~~t~IV~LQNGl~ 121 (308)
.+ .....||.---++-
T Consensus 81 ~~~~l~~~~ivtDv~SvK 98 (359)
T PRK06545 81 ADLELKPGVIVTDVGSVK 98 (359)
T ss_pred hhcCCCCCcEEEeCcccc
Confidence 86 23345665555554
No 56
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.17 E-value=0.27 Score=46.33 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=48.3
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC-----------CCCC---------CCCcEEEEecCc-cHHHHHHhC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL-----------VPLD---------FEGPIFVCTRND-DLEAVLEAA 105 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~-----------~~~~---------~~~~IlvatK~~-dl~~~l~~l 105 (308)
|+|.|||.|.+|+.+++.. +|+.+ +..|.+. .-.+ ..+.|++|++.+ .++++++.+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 7899999999999999643 57776 6777431 1011 124689999987 778887776
Q ss_pred CCC--CCCeEEEEecCCC
Q 021746 106 PRS--RWNDLVFFQNGMI 121 (308)
Q Consensus 106 ~~~--~~t~IV~LQNGl~ 121 (308)
.+. .++.+|-+-|+-.
T Consensus 81 ~~~l~~g~ivid~st~~~ 98 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYY 98 (301)
T ss_pred HhhCCCCCEEEeCCCCCh
Confidence 653 2345665555543
No 57
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.96 E-value=0.16 Score=50.34 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=25.4
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.|+|.|||.|-||+.+|... +|+.| .+.|++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 48999999999999999653 57887 777754
No 58
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.93 E-value=0.46 Score=46.53 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=41.5
Q ss_pred ccEEEEcc-ChhHHHHHHhc---CCCcE-EecCCCCCCCC------CCCcEEEEecCccHHHHHHhCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG---KGQDL-LVKRGELVPLD------FEGPIFVCTRNDDLEAVLEAAPR 107 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~---~g~~v-~v~Rg~~~~~~------~~~~IlvatK~~dl~~~l~~l~~ 107 (308)
++|.|||. |.||+.|+... .|..| -+.|......+ ..+.|++||.-....++++++.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~ 73 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVA 73 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhh
Confidence 79999999 99999999642 24444 44443211111 13679999999999999998876
No 59
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=90.89 E-value=9 Score=35.69 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=43.4
Q ss_pred EEccChhHHHHHHhc--CCCcE-EecCCCC-----------CCCC------CCCcEEEEecC-ccHHHHH---HhCCCC-
Q 021746 54 IVGGGRVGTALKEMG--KGQDL-LVKRGEL-----------VPLD------FEGPIFVCTRN-DDLEAVL---EAAPRS- 108 (308)
Q Consensus 54 IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~-----------~~~~------~~~~IlvatK~-~dl~~~l---~~l~~~- 108 (308)
|||.|.+|+.+++.. +|++| +..|... ...+ ..+.|++|++. .++++++ +.+.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 589999999999643 57777 6777532 1111 12569999998 5678887 455443
Q ss_pred CCCeEEEEecCCC
Q 021746 109 RWNDLVFFQNGMI 121 (308)
Q Consensus 109 ~~t~IV~LQNGl~ 121 (308)
....++.--.++.
T Consensus 81 ~~g~~vid~st~~ 93 (288)
T TIGR01692 81 AKGSLLIDCSTID 93 (288)
T ss_pred CCCCEEEECCCCC
Confidence 2234554555665
No 60
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.78 E-value=2.9 Score=39.04 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=49.7
Q ss_pred ccEEEEccChhHHHHHHh--cCCCcE-EecCCCC---------------C-----------------------CCC----
Q 021746 50 APAAIVGGGRVGTALKEM--GKGQDL-LVKRGEL---------------V-----------------------PLD---- 84 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~~---------------~-----------------------~~~---- 84 (308)
.+|+|||+|.+|+.++.. .+|++| ++.|.+. + ..+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 83 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYESL 83 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHHh
Confidence 479999999999999964 357776 7766431 0 011
Q ss_pred -CCCcEEEEecCcc--HHHHHHhCCCC--CCCeEEEEecCCChhHHh
Q 021746 85 -FEGPIFVCTRNDD--LEAVLEAAPRS--RWNDLVFFQNGMIEPWLE 126 (308)
Q Consensus 85 -~~~~IlvatK~~d--l~~~l~~l~~~--~~t~IV~LQNGl~~~~l~ 126 (308)
..+.|+.|++++. ..++++++.+. +++.|+....|+....+.
T Consensus 84 ~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la 130 (291)
T PRK06035 84 SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIA 130 (291)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHH
Confidence 0246899998763 56666666552 345677777777644443
No 61
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=89.77 E-value=1.1 Score=42.74 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=51.3
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcEEe-cCCC--CCC---------CC------CCCcEEEEecCc-cHHHHHHhCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDLLV-KRGE--LVP---------LD------FEGPIFVCTRND-DLEAVLEAAPR 107 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v~v-~Rg~--~~~---------~~------~~~~IlvatK~~-dl~~~l~~l~~ 107 (308)
.++|.|||.|.+|+.++..+ .|.++++ .|.. ++. .+ ..+.|++|+|.+ +...+++.+.+
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~ 82 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQHEVYEAEIQP 82 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHh
Confidence 47899999999999999542 5666533 3421 211 01 136799999988 77766666665
Q ss_pred C-CCCeEEEEecCCChhHH
Q 021746 108 S-RWNDLVFFQNGMIEPWL 125 (308)
Q Consensus 108 ~-~~t~IV~LQNGl~~~~l 125 (308)
. ....+|.+-=|+.-..+
T Consensus 83 ~l~~g~iVs~aaG~~i~~~ 101 (314)
T TIGR00465 83 LLKEGKTLGFSHGFNIHFV 101 (314)
T ss_pred hCCCCcEEEEeCCccHhhc
Confidence 3 22468999999874444
No 62
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=88.97 E-value=0.54 Score=35.07 Aligned_cols=31 Identities=29% Similarity=0.640 Sum_probs=24.9
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
+++|||+|-+|.=+|... .|.+| ++.|+..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 589999999999999653 46666 89988665
No 63
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.69 E-value=32 Score=34.31 Aligned_cols=247 Identities=19% Similarity=0.254 Sum_probs=137.4
Q ss_pred ccEEEEccChhHHHHHHh-c-CCC-cE-EecCCCCC---------------C----------------CC-----C---C
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQ-DL-LVKRGELV---------------P----------------LD-----F---E 86 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~-~v-~v~Rg~~~---------------~----------------~~-----~---~ 86 (308)
-++.|+|.|.++-=+|.. . ++. .+ ++.|...- . .| . .
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 378999999999999964 2 223 36 89994310 0 00 0 0
Q ss_pred ---CcEEEEecCccHHHHHHhCCCC---CCCeEEEEecCCCh-hHHhhc-CCCCCceeEEEEEeeccCCCC-CCCc----
Q 021746 87 ---GPIFVCTRNDDLEAVLEAAPRS---RWNDLVFFQNGMIE-PWLESK-GLKDANQVLAYFAVSKLGERP-IDGK---- 153 (308)
Q Consensus 87 ---~~IlvatK~~dl~~~l~~l~~~---~~t~IV~LQNGl~~-~~l~~~-~~~~~~~v~~~~~~~~~G~~~-~dg~---- 153 (308)
+-+++||..|.--++|+++++. .=..||++-=.++. -++..+ ...+.....+-|+ +..|+.+ .|+.
T Consensus 82 g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFS-tY~gdTr~~d~~~~~~ 160 (429)
T PF10100_consen 82 GEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFS-TYYGDTRWSDGEQPNR 160 (429)
T ss_pred ccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEee-cccccceeccCCCcce
Confidence 2479999999999999999983 12589999988883 333322 1011122223333 4677743 2221
Q ss_pred eecCCC------CCcccccccHHHHHHHHHcCCCceeecChhhHHHH------------HHHHHHHHHhhhhhhHh---h
Q 021746 154 TDTNPE------GLTAAYGKWASVVAERLSVGGLSCKVLDKEAFQKQ------------MLEKLIWISAFMLVGAR---H 212 (308)
Q Consensus 154 i~~~g~------g~~~~~G~~a~~l~~~L~~aGI~~~v~~~~dI~~~------------~WeKlv~N~a~N~ltAl---~ 212 (308)
+..++- |.+-........+++.|++.||+..+.+.+ +..+ .-.++-.|+.|..-+.- +
T Consensus 161 vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~p-l~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvY 239 (429)
T PF10100_consen 161 VLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNP-LEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVY 239 (429)
T ss_pred ehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCCh-HhhhhcccceecCChHhhChhhHHHHhCCCCCcceEE
Confidence 111111 111111123477999999999998776533 2222 12233333333332220 1
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHhcCCC--------------CCh-----HHHHHHH-------------HHh-
Q 021746 213 TGATVGVVEKEYRSEVSALIAELALAAAAEKGIT--------------FDP-----AMEDRLC-------------AYS- 259 (308)
Q Consensus 213 ~~~tvG~L~~~~~~~~~~lm~Ev~avA~a~~Gv~--------------l~~-----~~~e~~~-------------~~~- 259 (308)
.=-|=|-+-+..-..++.+=.|+.++..+ .|++ +.+ +-+|... +|+
T Consensus 240 KL~PEGPIT~~~I~~M~~lw~Ei~~i~~~-l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVRYts 318 (429)
T PF10100_consen 240 KLFPEGPITPTLIRDMVQLWKEIMEILNK-LGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVRYTS 318 (429)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHHhhh
Confidence 00133334444446677888899888886 4532 221 1122111 122
Q ss_pred ---------hhcCC---------------------CCcchhhhhhhhhHHhhcchHHHhCCCCCCCcchHHHHHH
Q 021746 260 ---------RAVAN---------------------FPTAVKEFKWRNGWFYSLSEKASAEGKPDPCPLHTAWLKE 304 (308)
Q Consensus 260 ---------~~~~~---------------------~~t~~~Ei~~~nG~vv~~~~~~~~~Gv~~p~P~~~~l~~~ 304 (308)
|..+. =+-+|+|=-++.-.+..+ |+..|+ +||+-+.++..
T Consensus 319 iLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~l---a~~l~v--~~Ptid~~l~~ 388 (429)
T PF10100_consen 319 ILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGL---ARALNV--SCPTIDRFLAR 388 (429)
T ss_pred heeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHH---HHHhCC--CCcHHHHHHHH
Confidence 11110 011489988999999988 567899 99999988765
No 64
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=87.22 E-value=3 Score=40.61 Aligned_cols=71 Identities=24% Similarity=0.297 Sum_probs=51.4
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC-----------C------CCCCCcEEEEecCccHHHHHHhCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV-----------P------LDFEGPIFVCTRNDDLEAVLEAAPRSR 109 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~-----------~------~~~~~~IlvatK~~dl~~~l~~l~~~~ 109 (308)
.+|+|||-|-+|+++|... +||++ .-.|.+.- . ...++.|+.||...+.+.+++..++.+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatypfqr 132 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYPFQR 132 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcCchh
Confidence 5899999999999999753 78988 44565421 1 012478999999999999999999963
Q ss_pred --CCeEEEEecCC
Q 021746 110 --WNDLVFFQNGM 120 (308)
Q Consensus 110 --~t~IV~LQNGl 120 (308)
+..|+-=|-.+
T Consensus 133 lrrgtlfvdvlSv 145 (480)
T KOG2380|consen 133 LRRGTLFVDVLSV 145 (480)
T ss_pred hccceeEeeeeec
Confidence 33444444444
No 65
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=84.71 E-value=22 Score=32.41 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=34.9
Q ss_pred CCcEEEEecCccHHHHHHhCCCC--CCCeEEEEecCCChhHHhh
Q 021746 86 EGPIFVCTRNDDLEAVLEAAPRS--RWNDLVFFQNGMIEPWLES 127 (308)
Q Consensus 86 ~~~IlvatK~~dl~~~l~~l~~~--~~t~IV~LQNGl~~~~l~~ 127 (308)
.+.||+|||.++++++++++.+. .++.||.+-+|+.-+.+..
T Consensus 44 aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~ 87 (245)
T TIGR00112 44 ADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQ 87 (245)
T ss_pred CCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHH
Confidence 36799999999999999999863 3469999999999666654
No 66
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.51 E-value=0.94 Score=42.29 Aligned_cols=31 Identities=16% Similarity=0.404 Sum_probs=25.1
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++|+|||+|.+|.-+|... +|++| ++.|.+
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 47899999999999999653 57777 887753
No 67
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.62 E-value=0.97 Score=42.68 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=24.6
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
|+|.|||+|.+|+.++... +|+.| ++.|.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 6899999999999999652 57777 888753
No 68
>PRK06753 hypothetical protein; Provisional
Probab=83.44 E-value=1.2 Score=42.62 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=24.9
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~ 80 (308)
|+|+|||+|-.|..+|-. . .|.+| ++-|...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 789999999999999944 2 57887 8887654
No 69
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.24 E-value=1.2 Score=41.48 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=24.4
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
.++|+|||+|.+|..+|... +|++| ++.|.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47899999999999999653 57777 77774
No 70
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=82.78 E-value=1.2 Score=43.14 Aligned_cols=30 Identities=17% Similarity=0.439 Sum_probs=24.6
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
|+++|||+|-+|...|.. . +|.+| ++-|+.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 789999999999999843 2 57777 888875
No 71
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=82.23 E-value=1.4 Score=42.75 Aligned_cols=30 Identities=40% Similarity=0.640 Sum_probs=25.2
Q ss_pred cccEEEEccChhHHHHHH-hc-CCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKE-MG-KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg 78 (308)
.++|+|||+|-+|..+|. +. .|.+| +|-|.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 378999999999999995 43 58887 89886
No 72
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=82.13 E-value=1.3 Score=38.62 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=22.4
Q ss_pred cEEEEccChhHHHHHHh--cCCCcE-EecCCC
Q 021746 51 PAAIVGGGRVGTALKEM--GKGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~ 79 (308)
+|+|||+|.+|.-+|.+ .+|.+| ++.+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999975 368887 888855
No 73
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=81.89 E-value=1.5 Score=37.47 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=44.1
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC----C-------CCC------CCcEEEEecC-ccHHHHHHh--C
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV----P-------LDF------EGPIFVCTRN-DDLEAVLEA--A 105 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~----~-------~~~------~~~IlvatK~-~dl~~~l~~--l 105 (308)
+|+|.|||.|.+|.-+++.+ +|++| ...|.... . .++ .+.|++|+.+ .++++++.. +
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 37999999999999999653 68887 66665311 0 111 1568999998 578888877 4
Q ss_pred CC-CCCCeEEEEecCCC
Q 021746 106 PR-SRWNDLVFFQNGMI 121 (308)
Q Consensus 106 ~~-~~~t~IV~LQNGl~ 121 (308)
.+ .....++.-.+-..
T Consensus 81 ~~~l~~g~iiid~sT~~ 97 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTIS 97 (163)
T ss_dssp GGGS-TTEEEEE-SS--
T ss_pred hhccccceEEEecCCcc
Confidence 44 33445666666665
No 74
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=81.61 E-value=3.2 Score=41.58 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=25.9
Q ss_pred cccccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 47 TQVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 47 ~~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
...+.++|||+|..|...|..+ +|.+| ++-|..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3447899999999999999653 57777 887754
No 75
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=81.21 E-value=1.5 Score=39.06 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=39.9
Q ss_pred ccEEEEcc-ChhHHHHHH--hcCCCcE-EecCCCCCCCCCCCcEEEEecC--ccHHHHHHhCCCCCCCeEEEEecCC
Q 021746 50 APAAIVGG-GRVGTALKE--MGKGQDL-LVKRGELVPLDFEGPIFVCTRN--DDLEAVLEAAPRSRWNDLVFFQNGM 120 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~--~~~g~~v-~v~Rg~~~~~~~~~~IlvatK~--~dl~~~l~~l~~~~~t~IV~LQNGl 120 (308)
|||+|||+ |.+|..|.. ..+||.| =|.|+...-..- .-+...+. .|++++.+.+.. ++.||.--++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~a~~l~g--~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSLASDLAG--HDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc--ccceeecccccChhhhHhhhcC--CceEEEeccCC
Confidence 89999997 899999994 4567876 788875431110 11222232 355555444433 35666655555
No 76
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=80.80 E-value=1.1 Score=37.48 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=16.5
Q ss_pred ccEEEEcc-ChhHHHHHHh
Q 021746 50 APAAIVGG-GRVGTALKEM 67 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~ 67 (308)
|||+|||+ |.||..++-+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~ 19 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALL 19 (141)
T ss_dssp SEEEEESTTSHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHH
Confidence 89999999 9999999953
No 77
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=80.57 E-value=1.7 Score=42.30 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.1
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+|+|||+|-+|...|..+ .|.+| ++-|+.
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999543 47777 888875
No 78
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.15 E-value=1.7 Score=41.22 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=24.1
Q ss_pred ccEEEEccChhHHHHHHhc--CC--CcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KG--QDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g--~~v-~v~Rg~~ 80 (308)
|||+|||+|.||+.++... .| +.+ ++.|++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 7899999999999999542 34 344 8998764
No 79
>PLN02858 fructose-bisphosphate aldolase
Probab=79.27 E-value=24 Score=40.48 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=37.1
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC----------C-CC------CCCcEEEEecC-ccHHHHH
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV----------P-LD------FEGPIFVCTRN-DDLEAVL 102 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~----------~-~~------~~~~IlvatK~-~dl~~~l 102 (308)
.++|.+||.|.+|..+++.+ +|+.+ ...|.... . .+ ..+.|++|+++ .++++++
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl 398 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVL 398 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHH
Confidence 47899999999999999643 57776 55564311 0 11 12568999996 4667776
No 80
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=79.16 E-value=2.5 Score=44.78 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=50.1
Q ss_pred ccEEEEccChhHHHHHHhc--CC--CcE-EecCCCC---------C----CCC------CCCcEEEEecCccHHHHHHhC
Q 021746 50 APAAIVGGGRVGTALKEMG--KG--QDL-LVKRGEL---------V----PLD------FEGPIFVCTRNDDLEAVLEAA 105 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g--~~v-~v~Rg~~---------~----~~~------~~~~IlvatK~~dl~~~l~~l 105 (308)
.+|.|||.|.+|+.++... .| +.| .+.|.+. . ..+ ..+.|++|++...++++++.+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l 83 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADL 83 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence 5799999999999999642 45 345 6777532 0 111 125799999999999999988
Q ss_pred CCC-CCCeEEEEecCCC
Q 021746 106 PRS-RWNDLVFFQNGMI 121 (308)
Q Consensus 106 ~~~-~~t~IV~LQNGl~ 121 (308)
.+. ....||..-.++-
T Consensus 84 ~~~~~~~~ii~d~~svk 100 (735)
T PRK14806 84 KPLLSEHAIVTDVGSTK 100 (735)
T ss_pred HHhcCCCcEEEEcCCCc
Confidence 874 2345666666664
No 81
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=79.16 E-value=1.5 Score=38.55 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=19.3
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
|+|.|||.|-||.-+|... +|+.| -+-.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 8999999999999999653 57776 55553
No 82
>PRK07538 hypothetical protein; Provisional
Probab=78.63 E-value=2.2 Score=41.63 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=24.8
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~ 80 (308)
|+|+|||+|-.|..+|.. . .|.+| ++-|...
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 789999999999999954 3 47787 8877653
No 83
>PRK07236 hypothetical protein; Provisional
Probab=78.14 E-value=2.6 Score=40.73 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=24.9
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++|+|||+|-.|...|..+ .|.+| ++-|..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 48999999999999999543 47777 888864
No 84
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.03 E-value=2.4 Score=40.73 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=24.9
Q ss_pred ccccEEEEccChhHHHHHHh--cCCCcE-EecCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM--GKGQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg 78 (308)
.+.+|+|||+|-+|.-|+.. .+|++| ++.+.
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34689999999999999965 368887 77764
No 85
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=78.02 E-value=2.2 Score=43.18 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=23.3
Q ss_pred cccEEEEccChhHHHHHHhc----CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG----KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~----~g~~v-~v~Rg~ 79 (308)
+|+|.|||.|.||..+|... +|++| .+.+++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 48999999999999999642 34555 666643
No 86
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=77.85 E-value=1.9 Score=39.78 Aligned_cols=40 Identities=33% Similarity=0.519 Sum_probs=30.8
Q ss_pred chhhcccccccccccEEEEccChhHHHHHHh--cCCCcE-EecCCCC
Q 021746 37 SAFAMASFTTTQVAPAAIVGGGRVGTALKEM--GKGQDL-LVKRGEL 80 (308)
Q Consensus 37 ~~~~~~~~~~~~~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~~ 80 (308)
++++.|+ ++-.+.|||+|-+|+-+|.. ..|.+| ++.+++.
T Consensus 3 s~s~~~~----~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 3 SASANMA----EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccccc----cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 4455555 34678999999999999975 358887 9999874
No 87
>PRK07588 hypothetical protein; Provisional
Probab=77.83 E-value=2.4 Score=40.87 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=24.4
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
|+|+|||+|-.|...|..+ +|.+| ++-|...
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 6899999999999999542 57777 8877543
No 88
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=76.87 E-value=3.3 Score=42.14 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=25.6
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
...+|+|||+|..|..+|..+ +|.+| ++-|..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 347899999999999999543 47776 888865
No 89
>PRK06126 hypothetical protein; Provisional
Probab=76.82 E-value=3 Score=42.34 Aligned_cols=32 Identities=47% Similarity=0.641 Sum_probs=25.4
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
...+|+|||+|-+|...|-.+ +|.+| ++-|..
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 346899999999999999543 57777 888764
No 90
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=76.23 E-value=2.5 Score=42.84 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=24.2
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
+|+|+|||+|.+|+-++... +|++| +..|.
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 47999999999999999652 58887 66654
No 91
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.47 E-value=2.7 Score=41.35 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=24.3
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
|+++|+|+|.+|..++..+ .|++| +|.|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 7899999999999999753 46776 887743
No 92
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=75.35 E-value=3.6 Score=39.82 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=25.6
Q ss_pred cccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~ 80 (308)
.++|+|||+|-.|..+|.. . +|++| ++-|...
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 3789999999999999954 3 58887 8887643
No 93
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=75.19 E-value=3 Score=38.65 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=23.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+|+|||+|-.|...|..+ +|.+| ++-|....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 4789999999999999543 58887 88887554
No 94
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=75.17 E-value=3.8 Score=39.34 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=24.7
Q ss_pred ccEEEEccChhHHHHHH-hc-CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKE-MG-KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg~~ 80 (308)
++|+|||+|-+|..+|. +. +|.+| ++-|...
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 67999999999999995 33 47777 8888643
No 95
>PLN02858 fructose-bisphosphate aldolase
Probab=74.91 E-value=1.1e+02 Score=35.27 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=36.6
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC-----------CCC------CCCcEEEEecCc-cHHHHH
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV-----------PLD------FEGPIFVCTRND-DLEAVL 102 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~-----------~~~------~~~~IlvatK~~-dl~~~l 102 (308)
.+|.+||.|.+|.-+++.+ +|+.| ...|.... -++ ..+.||+|+.++ .+++++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~ 78 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVF 78 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHH
Confidence 6799999999999999653 68887 66664321 011 125689999885 556665
No 96
>PRK08163 salicylate hydroxylase; Provisional
Probab=74.56 E-value=3.3 Score=39.81 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=24.9
Q ss_pred ccEEEEccChhHHHHHH-hc-CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKE-MG-KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg~~ 80 (308)
++|+|||+|-.|...|. +. .|.+| ++-|...
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 78999999999999995 43 57887 8877643
No 97
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=74.09 E-value=25 Score=33.47 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=38.2
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMI 121 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl~ 121 (308)
..++.|||.|.||.-+++++ .|..| .+.|...- . ++ +-.+....+++++++. .++|.+.--..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~--~-~~-~~~~~~~~~l~e~l~~------aDvvv~~lPlt 201 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKS--W-PG-VQSFAGREELSAFLSQ------TRVLINLLPNT 201 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC--C-CC-ceeecccccHHHHHhc------CCEEEECCCCC
Confidence 36899999999999999764 36666 56653221 1 11 1111234578888733 46666655544
No 98
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=74.02 E-value=3.6 Score=36.57 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=23.1
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKR 77 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~R 77 (308)
..|+++|+|.|.||..++..+ .|+.| ...|
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~ 59 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADI 59 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 458999999999999999753 57766 4443
No 99
>PRK05086 malate dehydrogenase; Provisional
Probab=73.71 E-value=3.3 Score=39.44 Aligned_cols=66 Identities=24% Similarity=0.397 Sum_probs=38.5
Q ss_pred ccEEEEcc-ChhHHHHHH---h--cCCCcE-EecCCCCCC---CCCC--C-c-EEEEecCccHHHHHHhCCCCCCCeEEE
Q 021746 50 APAAIVGG-GRVGTALKE---M--GKGQDL-LVKRGELVP---LDFE--G-P-IFVCTRNDDLEAVLEAAPRSRWNDLVF 115 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~---~--~~g~~v-~v~Rg~~~~---~~~~--~-~-IlvatK~~dl~~~l~~l~~~~~t~IV~ 115 (308)
|||+|||+ |.||..++. . +.++.+ ++.|.+... .|.. . . .+..+...++.+.+ . ..++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l---~---~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPAL---E---GADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHc---C---CCCEEE
Confidence 89999999 999999993 2 134454 777764321 1211 1 1 22222344554444 2 247777
Q ss_pred EecCCC
Q 021746 116 FQNGMI 121 (308)
Q Consensus 116 LQNGl~ 121 (308)
+-.|..
T Consensus 75 itaG~~ 80 (312)
T PRK05086 75 ISAGVA 80 (312)
T ss_pred EcCCCC
Confidence 777874
No 100
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.45 E-value=3 Score=38.83 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=23.6
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
.+|+|||+|.+|.-+|... +|++| ++.|+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4789999999999999653 57777 77775
No 101
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=73.43 E-value=2.6 Score=41.46 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=24.5
Q ss_pred ccEEEEccChhHHHHHHhc-CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~-~g~~v-~v~Rg~ 79 (308)
|+|.|||.|-||.-+|.+. .|++| .+.|.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~G~~VigvD~d~ 32 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQNHEVVALDILP 32 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCcEEEEECCH
Confidence 7899999999999999653 47777 888854
No 102
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.20 E-value=4 Score=38.31 Aligned_cols=30 Identities=27% Similarity=0.597 Sum_probs=24.4
Q ss_pred ccEEEEccChhHHHHHHh--cCCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEM--GKGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~ 79 (308)
.+|+|||+|.+|.-+|.. .+|++| ++.|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 489999999999999965 368887 777754
No 103
>PRK06847 hypothetical protein; Provisional
Probab=72.98 E-value=4.3 Score=38.68 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=24.8
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
.++|+|||+|-.|.+.|..+ .|.+| ++-|...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999543 47777 7777543
No 104
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=72.95 E-value=5.2 Score=40.73 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=25.2
Q ss_pred cccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~ 80 (308)
..+|+|||+|..|..+|.. . +|.+| +|-|...
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3689999999999999954 3 47777 8877653
No 105
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=72.70 E-value=3.6 Score=39.59 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=38.1
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMI 121 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl~ 121 (308)
..|++.|||.|.||+.+|.+. .|..| .+.|...... +. + ....+++++++ +.++|.+.--..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~---~~--~-~~~~~l~ell~------~aDiVil~lP~t 209 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDL---DF--L-TYKDSVKEAIK------DADIISLHVPAN 209 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhh---hh--h-hccCCHHHHHh------cCCEEEEeCCCc
Confidence 358999999999999999763 47776 6666532100 11 1 11246777763 246666666554
No 106
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=72.25 E-value=6.6 Score=38.38 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=25.5
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..|+|+|+|+ |.||..++..+ .|++| .+.|..
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 4689999998 99999999643 57776 777864
No 107
>PRK06223 malate dehydrogenase; Reviewed
Probab=71.91 E-value=4.3 Score=38.13 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=23.9
Q ss_pred cccEEEEccChhHHHHHHhc--CCC-cE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQ-DL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~-~v-~v~Rg~~ 80 (308)
+|||+|||+|.||..++... .|. .+ ++.+.+.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 38999999999999999542 232 44 8888553
No 108
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=71.20 E-value=4.6 Score=38.68 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=24.5
Q ss_pred cccEEEEccChhHHHHHHhc--C---CCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--K---GQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~---g~~v-~v~Rg 78 (308)
.++|+|||+|-.|...|-.+ . |.+| ++-|.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 47899999999999999543 3 8887 88884
No 109
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=70.57 E-value=4.4 Score=40.03 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=23.9
Q ss_pred cccEEEEccChhHHHHHHhc--CC-CcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KG-QDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g-~~v-~v~Rg 78 (308)
.|+|+|||+|.||+..+... .| .+| +..|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 37999999999999999763 34 455 88886
No 110
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=70.57 E-value=5.1 Score=35.70 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=40.6
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCC-------------------CCC--CCcEEEEecCccHHHHHH
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVP-------------------LDF--EGPIFVCTRNDDLEAVLE 103 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~-------------------~~~--~~~IlvatK~~dl~~~l~ 103 (308)
+..+++|||+|.||..-+..+ +|.++ +|.+.-+-. .+. .+.|+.||.+.++...+.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~i~ 88 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQVK 88 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHHHH
Confidence 347899999999999988642 56666 888753200 011 135788888888888876
Q ss_pred hCC
Q 021746 104 AAP 106 (308)
Q Consensus 104 ~l~ 106 (308)
...
T Consensus 89 ~~a 91 (202)
T PRK06718 89 EDL 91 (202)
T ss_pred HHH
Confidence 654
No 111
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=70.55 E-value=5.2 Score=38.58 Aligned_cols=32 Identities=41% Similarity=0.520 Sum_probs=25.5
Q ss_pred ccccEEEEccChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
+..+|+|||+|-+|...|.. . +|..| ++-|..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 34689999999999999954 3 47777 888864
No 112
>PRK08013 oxidoreductase; Provisional
Probab=70.13 E-value=5.3 Score=38.85 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=24.2
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
.+|+|||+|-+|...|.. . .|.+| ++-|..
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 578999999999999954 3 47777 888754
No 113
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=70.01 E-value=5 Score=39.11 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=24.2
Q ss_pred ccEEEEccChhHHHHHHh-c-CCC-cE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQ-DL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~-~v-~v~Rg~~~ 81 (308)
|+|+|||+|-.|...|-. . +|+ +| ++-|...+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 789999999988888844 3 464 66 88886543
No 114
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=69.98 E-value=3.3 Score=33.83 Aligned_cols=30 Identities=37% Similarity=0.553 Sum_probs=22.6
Q ss_pred ccEEEEcc-ChhHHHHHHhc---CCCc-E-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG---KGQD-L-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~---~g~~-v-~v~Rg~ 79 (308)
|||+|+|+ |++|..++... .+.. + .+.|..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 79999999 99999999752 2333 3 566665
No 115
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=69.82 E-value=5.4 Score=34.13 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=38.9
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCCC-----CC-----------CCCC--CcEEEEecCccHHHHHHhCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL-----VP-----------LDFE--GPIFVCTRNDDLEAVLEAAP 106 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~-----~~-----------~~~~--~~IlvatK~~dl~~~l~~l~ 106 (308)
+..+++|||+|.||..-++.+ .|++| +|...-. ++ .|.. +.|+.||.++++...+.+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a 91 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVKQAA 91 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHHHHHH
Confidence 457899999999999988642 57777 7764321 00 0111 34677777777777765544
Q ss_pred C
Q 021746 107 R 107 (308)
Q Consensus 107 ~ 107 (308)
.
T Consensus 92 ~ 92 (157)
T PRK06719 92 H 92 (157)
T ss_pred H
Confidence 3
No 116
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=69.68 E-value=5 Score=38.61 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=23.6
Q ss_pred ccEEEEccChhHHHHHH-hc-CCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKE-MG-KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg 78 (308)
++|+|||+|-+|..+|. +. .|.+| ++-|.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 57899999999999994 43 47887 88775
No 117
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=69.46 E-value=5.6 Score=35.39 Aligned_cols=30 Identities=33% Similarity=0.419 Sum_probs=22.2
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|+|+|++|+.++-. |.|+.+++-+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4789999999999999954 33334466665
No 118
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=69.01 E-value=6.6 Score=39.50 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=24.6
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
..+++|||+|.-|..-|..+ .|.++ ++-|+..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 37899999999998888542 47776 8888654
No 119
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=68.70 E-value=5.5 Score=37.16 Aligned_cols=30 Identities=23% Similarity=0.666 Sum_probs=23.5
Q ss_pred cccEEEEccChhHHHHHHh--cCCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM--GKGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg 78 (308)
..+|+|||+|.+|.-++.. .+|.+| ++.|.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~ 36 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSD 36 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3579999999999999965 257776 67664
No 120
>PRK07045 putative monooxygenase; Reviewed
Probab=68.66 E-value=5.8 Score=38.20 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=26.2
Q ss_pred ccccEEEEccChhHHHHHHh-c-CCCcE-EecCCCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRGELV 81 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~~ 81 (308)
..++|+|||+|..|..+|-. . .|.+| ++-|....
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 34789999999999999954 3 47777 88876543
No 121
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=68.35 E-value=8.5 Score=30.25 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=34.3
Q ss_pred cccEEEEccChhHHHHHHh-c-CCCcE-EecCCC------------CCCCCCC--CcEEEEecCccHHHHHHh
Q 021746 49 VAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE------------LVPLDFE--GPIFVCTRNDDLEAVLEA 104 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~------------~~~~~~~--~~IlvatK~~dl~~~l~~ 104 (308)
.-+++|||+|.+|.-=+.. . .|..+ +|++.. .++.+.. ..|++||-+..+.+.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~ 79 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPELNEAIYA 79 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHHHHHHHHH
Confidence 4688999999999987754 3 46666 888872 2221222 357777777666665544
No 122
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=68.13 E-value=6.1 Score=38.11 Aligned_cols=29 Identities=34% Similarity=0.661 Sum_probs=23.4
Q ss_pred ccEEEEccChhHHHHHH-hc-CCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKE-MG-KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg 78 (308)
.+|+|||+|-+|..+|. +. .|.+| ++-+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 57999999999999995 43 47777 88765
No 123
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=67.95 E-value=6.1 Score=38.63 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=24.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
|+++|||+|..|+..|..+ .|.+| ++-|...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 5789999999999999643 47787 8887643
No 124
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=67.51 E-value=4.8 Score=39.84 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=24.6
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
|||.|+|.|=||..-|... .||+| .|--.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 8999999999999999653 48887 676644
No 125
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=67.19 E-value=4 Score=33.52 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=21.1
Q ss_pred ccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 50 APAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
.+|+|+|+|++|+.++.. |.|.-+++-.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 689999999999999953 34433466665
No 126
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=67.01 E-value=6.6 Score=37.71 Aligned_cols=31 Identities=35% Similarity=0.526 Sum_probs=24.7
Q ss_pred cccEEEEccChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
..+|+|||+|-.|...|.. . .|.+| +|-|..
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 4789999999999999954 3 47787 887754
No 127
>PRK09126 hypothetical protein; Provisional
Probab=66.90 E-value=6.2 Score=37.88 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=23.9
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
.+++|||+|-.|...|.. . +|.+| ++-|..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 578999999999999954 3 57887 887764
No 128
>PRK05868 hypothetical protein; Validated
Probab=66.83 E-value=6.7 Score=37.88 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=24.5
Q ss_pred ccEEEEccChhHHHHHH-hc-CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKE-MG-KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg~~ 80 (308)
++|+|||+|-.|...|- +. +|.+| ++-|...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 67999999999999994 33 57777 8888644
No 129
>PLN00016 RNA-binding protein; Provisional
Probab=66.55 E-value=6.4 Score=37.98 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=25.9
Q ss_pred ccccEEEE----cc-ChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 48 QVAPAAIV----GG-GRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 48 ~~m~i~Ii----G~-G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
..|+|.|+ |+ |-||..++..+ .|+.| .+.|+..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~ 91 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKE 91 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCc
Confidence 44789999 76 99999999643 57887 8888753
No 130
>PRK06996 hypothetical protein; Provisional
Probab=66.50 E-value=6.7 Score=38.08 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=25.9
Q ss_pred hcccccccccccEEEEccChhHHHHHH-hc-CCC----cE-EecCCC
Q 021746 40 AMASFTTTQVAPAAIVGGGRVGTALKE-MG-KGQ----DL-LVKRGE 79 (308)
Q Consensus 40 ~~~~~~~~~~m~i~IiG~G~vG~~~a~-~~-~g~----~v-~v~Rg~ 79 (308)
++|++.. .+|+|||+|.+|..+|. +. +|. .| +|-|..
T Consensus 5 ~~~~~~~---~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 5 ASMAAPD---FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred hhccCCC---CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 4466543 57899999999999994 43 352 34 888853
No 131
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=66.22 E-value=6 Score=36.82 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=35.8
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCCCC-----------CCC------CCCcEEEEecCc-cHHHHH
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV-----------PLD------FEGPIFVCTRND-DLEAVL 102 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~-----------~~~------~~~~IlvatK~~-dl~~~l 102 (308)
+|.|||.|.+|..++... .|++| .+.|.... ..+ ..+.|++|++.. ++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~ 73 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVA 73 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHH
Confidence 589999999999999653 57777 77776421 011 125689999875 566564
No 132
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=66.07 E-value=6.2 Score=34.14 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=32.4
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHh
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEA 104 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~ 104 (308)
...++.|||.|+||..++++. -|-.| .+.|...-........+ +..++++++++
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~---~~~~l~ell~~ 91 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV---EYVSLDELLAQ 91 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE---EESSHHHHHHH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc---eeeehhhhcch
Confidence 347899999999999999764 35666 66665332110001111 22478888754
No 133
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=66.01 E-value=6.3 Score=38.43 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=25.3
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
++.++|||+|.-|+..|..+ .|-+| ++-|+.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~ 36 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGS 36 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCC
Confidence 47899999999999999653 46666 888865
No 134
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=65.95 E-value=6.3 Score=38.26 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=23.3
Q ss_pred ccEEEEccChhHHHHHH-hc-CCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKE-MG-KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg 78 (308)
.+|+|||+|-+|..+|- +. +|..| ++-|.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47899999999999994 43 47777 88774
No 135
>PRK06184 hypothetical protein; Provisional
Probab=65.92 E-value=7.3 Score=39.15 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=24.9
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..+|+|||+|..|...|..+ +|.+| ++-|..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 36789999999999999543 58887 888754
No 136
>PRK08605 D-lactate dehydrogenase; Validated
Probab=65.89 E-value=4.9 Score=38.56 Aligned_cols=62 Identities=26% Similarity=0.389 Sum_probs=34.9
Q ss_pred ccccEEEEccChhHHHHHHhc-C--CCcEEecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG-K--GQDLLVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNG 119 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~-~--g~~v~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNG 119 (308)
..|++.|||.|.||..++.+. . |..| +.++.+....... . + ....+++++++. .++|.+.--
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~~V-~~~d~~~~~~~~~-~-~-~~~~~l~ell~~------aDvIvl~lP 209 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGSDV-VAYDPFPNAKAAT-Y-V-DYKDTIEEAVEG------ADIVTLHMP 209 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEE-EEECCCccHhHHh-h-c-cccCCHHHHHHh------CCEEEEeCC
Confidence 348999999999999999764 3 4444 4444322111111 1 1 122467777743 356655533
No 137
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=65.80 E-value=9.4 Score=38.59 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=48.4
Q ss_pred cEEEEccChhHHHHHHh-c-CCCcE-EecCCCC--------------CC-C-C---------CCCcEEEEecC-ccHHHH
Q 021746 51 PAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL--------------VP-L-D---------FEGPIFVCTRN-DDLEAV 101 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~--------------~~-~-~---------~~~~IlvatK~-~dl~~~ 101 (308)
.|.|||.|.+|+-++.. . +|++| +..|... +. . + .++.|++|+++ ..++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 37899999999999964 3 57777 6667321 11 0 0 12458999999 578888
Q ss_pred HHhCCCC--CCCeEEEEecCCC
Q 021746 102 LEAAPRS--RWNDLVFFQNGMI 121 (308)
Q Consensus 102 l~~l~~~--~~t~IV~LQNGl~ 121 (308)
++.+.+. ..+.||=.-|..-
T Consensus 81 i~~l~~~L~~g~iIID~gns~~ 102 (467)
T TIGR00873 81 INQLLPLLEKGDIIIDGGNSHY 102 (467)
T ss_pred HHHHHhhCCCCCEEEECCCcCH
Confidence 8887763 3456666666653
No 138
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=65.76 E-value=6.3 Score=40.18 Aligned_cols=31 Identities=23% Similarity=0.556 Sum_probs=25.4
Q ss_pred ccccEEEEccChhHHHHHHh--cCCCcE-EecCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM--GKGQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg 78 (308)
+..+|.|||+|.+|.-+|.. .+|+.| ++.|.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~ 37 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIR 37 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46789999999999999965 368887 77775
No 139
>PRK07190 hypothetical protein; Provisional
Probab=65.67 E-value=6.9 Score=39.52 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=23.9
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..++|||+|.+|...|..+ +|..| +|-|..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 5789999999999999643 57776 887754
No 140
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=65.65 E-value=6.5 Score=37.29 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=23.7
Q ss_pred ccEEEEccChhHHHHHHh--cCCC-cE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEM--GKGQ-DL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~--~~g~-~v-~v~Rg~~~ 81 (308)
|||+|||+|-||..+|.. ..|. +| ++.+.+.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l 37 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI 37 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh
Confidence 799999999999999953 2333 44 88875543
No 141
>PRK06185 hypothetical protein; Provisional
Probab=65.48 E-value=6.6 Score=37.94 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=24.6
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~ 80 (308)
.+|+|||+|-+|..+|.. . +|.+| +|-|...
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 678999999999999954 2 57777 8887643
No 142
>PTZ00367 squalene epoxidase; Provisional
Probab=64.79 E-value=7.2 Score=40.37 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=24.7
Q ss_pred ccEEEEccChhHHHHHH-hc-CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKE-MG-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg~ 79 (308)
++|+|||+|-.|..+|. +. .|++| ++-|..
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 78899999999999994 43 58887 888864
No 143
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=64.69 E-value=7 Score=37.85 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=23.9
Q ss_pred ccEEEEccChhHHHHHHhc--C--CCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--K--GQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~--g~~v-~v~Rg~ 79 (308)
.+|+|||+|-+|...|..+ . |.+| ++-|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4789999999999988532 3 7777 898875
No 144
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=64.56 E-value=7 Score=36.92 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=23.3
Q ss_pred ccEEEEccChhHHHHHH-hc-CC--CcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKE-MG-KG--QDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~g--~~v-~v~Rg~~ 80 (308)
+||+|||+|.||..++. +. .| +.+ ++.|.+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 47999999999999995 32 34 344 8888654
No 145
>CHL00194 ycf39 Ycf39; Provisional
Probab=64.49 E-value=6.8 Score=36.74 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=24.3
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
|+|.|.|+ |-||+.+.+.+ .|+.| .+.|+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~ 34 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNL 34 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcCh
Confidence 78999996 99999999653 57877 777863
No 146
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=64.47 E-value=6.6 Score=36.31 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=25.1
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCCCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVP 82 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~ 82 (308)
.|+|||+|-+|...|..+ .|..| +|-|+ .+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STT
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-ccc
Confidence 379999999999999643 57787 99999 554
No 147
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=63.85 E-value=8.5 Score=33.39 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=20.7
Q ss_pred cEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 51 PAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
+++|||+|++|+.++.. |.|+-+++-+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 57999999999999953 33444467665
No 148
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=63.80 E-value=8.6 Score=31.70 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=15.2
Q ss_pred cEEEEccChhHHHHHHh
Q 021746 51 PAAIVGGGRVGTALKEM 67 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~ 67 (308)
+|+|+|+|++|+.++..
T Consensus 1 ~VliiG~GglGs~ia~~ 17 (143)
T cd01483 1 RVLLVGLGGLGSEIALN 17 (143)
T ss_pred CEEEECCCHHHHHHHHH
Confidence 58999999999999964
No 149
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=63.37 E-value=11 Score=36.27 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=36.7
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNG 119 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNG 119 (308)
..++.|||.|.||+..+.++ -|-.| .+.|-...+. ....-...-.+|++++++ .++|.+.==
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~---~~~~~~~~~~~Ld~lL~~------sDiv~lh~P 206 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRER---AGVDGVVGVDSLDELLAE------ADILTLHLP 206 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhh---hccccceecccHHHHHhh------CCEEEEcCC
Confidence 47899999999999999764 24455 4444211111 112223334678888844 466666533
No 150
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=63.36 E-value=7.8 Score=37.41 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=23.5
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg~ 79 (308)
..+|+|||+|++|+.++.. |.|+-++|-+..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3789999999999999964 334445787763
No 151
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=63.23 E-value=7.5 Score=37.60 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=24.3
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
.+|+|||+|-.|..+|.. . .|.+| ++-|..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 578999999999999954 3 57777 888765
No 152
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=62.94 E-value=8.1 Score=36.74 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=23.4
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++|+|||+|-+|...|-.+ .|.+| ++-+++
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 37899999999997777543 46676 777654
No 153
>PRK06475 salicylate hydroxylase; Provisional
Probab=62.88 E-value=8.3 Score=37.43 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=25.1
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+|+|||+|-.|..+|..+ +|.+| ++-|...+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 5899999999999999542 57887 88886543
No 154
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=62.77 E-value=5.8 Score=36.96 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=17.1
Q ss_pred cccEEEEccChhHHHHHHh
Q 021746 49 VAPAAIVGGGRVGTALKEM 67 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~ 67 (308)
.|+|.|||.|.||..++..
T Consensus 6 ~irIGIIG~G~IG~~~a~~ 24 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQA 24 (271)
T ss_pred eeEEEEECccHHHHHHHHH
Confidence 4899999999999999964
No 155
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=62.70 E-value=8.5 Score=37.26 Aligned_cols=29 Identities=38% Similarity=0.619 Sum_probs=23.0
Q ss_pred cEEEEccChhHHHHHH-hc-CCCcE-EecCCC
Q 021746 51 PAAIVGGGRVGTALKE-MG-KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg~ 79 (308)
+|+|||+|-+|..+|. +. +|.+| ++-|..
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 6899999999999994 43 57777 777753
No 156
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=62.56 E-value=5.5 Score=36.80 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=16.6
Q ss_pred ccccEEEEccChhHHHHHH
Q 021746 48 QVAPAAIVGGGRVGTALKE 66 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~ 66 (308)
...+|+|||+|++|+.++.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~ 28 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIA 28 (244)
T ss_pred CCCeEEEEcCChHHHHHHH
Confidence 4479999999999999884
No 157
>PRK08244 hypothetical protein; Provisional
Probab=62.18 E-value=8.4 Score=38.59 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=24.2
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.+|+|||+|.+|..+|..+ +|.+| +|-|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4789999999999999543 57777 888754
No 158
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=61.95 E-value=6.3 Score=37.60 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=23.9
Q ss_pred ccccEEEEccChhHHHHHHh-c-CCC--cE-EecCCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM-G-KGQ--DL-LVKRGEL 80 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~-~-~g~--~v-~v~Rg~~ 80 (308)
..+||+|||+|.||+.++-. . .|. .+ ++-+.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 34799999999999999953 2 222 24 8888654
No 159
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=61.82 E-value=46 Score=32.97 Aligned_cols=61 Identities=25% Similarity=0.348 Sum_probs=37.8
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMI 121 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl~ 121 (308)
..++.|||.|+||..+|+++ -|-.| ...|..... .+.+ ....+++++++. .++|.+.=-+.
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~---~~~~---~~~~~l~ell~~------sDiVslh~Plt 214 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP---LGNA---RQVGSLEELLAQ------SDVVSLHVPET 214 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc---cCCc---eecCCHHHHHhh------CCEEEEcCCCC
Confidence 47899999999999999764 35555 445432111 1111 123478888843 57777764443
No 160
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=61.73 E-value=8.5 Score=32.50 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=37.9
Q ss_pred EEEEcc-ChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCC
Q 021746 52 AAIVGG-GRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGM 120 (308)
Q Consensus 52 i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl 120 (308)
|+|+|+ |.+|.++...+ .|+.| .+.|+..-..+.++.=++..--.|.+++.+.+.+ .+.|+...|-
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~---~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKG---ADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTT---SSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhh---cchhhhhhhh
Confidence 689997 99999999643 57776 7777744211112221333333566555555553 2455555553
No 161
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=61.64 E-value=8.5 Score=37.40 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=25.0
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
.+|+|||+|-.|...|..+ .|.+| ++-|...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5789999999999999543 58887 8888653
No 162
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=61.47 E-value=9 Score=36.99 Aligned_cols=30 Identities=40% Similarity=0.598 Sum_probs=23.1
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|||+|++|+.++.. |.|+-++|-++
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3789999999999999854 34444588775
No 163
>PTZ00325 malate dehydrogenase; Provisional
Probab=61.37 E-value=6.8 Score=37.60 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=22.4
Q ss_pred cccccEEEEcc-ChhHHHHHHh-c---CCCcE-EecC
Q 021746 47 TQVAPAAIVGG-GRVGTALKEM-G---KGQDL-LVKR 77 (308)
Q Consensus 47 ~~~m~i~IiG~-G~vG~~~a~~-~---~g~~v-~v~R 77 (308)
-...||+|||+ |.||..++-. . ....+ ++.+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 34569999999 9999999943 2 22334 8877
No 164
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=61.32 E-value=9.6 Score=39.07 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=24.4
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..++|||+|.+|...|..+ .|.+| +|-|+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 6789999999999999643 47776 898854
No 165
>PLN02602 lactate dehydrogenase
Probab=61.15 E-value=6.1 Score=38.42 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=22.7
Q ss_pred ccEEEEccChhHHHHHH-hc----CCCcEEecCCCC
Q 021746 50 APAAIVGGGRVGTALKE-MG----KGQDLLVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~----~g~~v~v~Rg~~ 80 (308)
+||+|||+|.||..++- +. .+.-+|+.+.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~ 73 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD 73 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 69999999999999994 32 222248887654
No 166
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=61.05 E-value=5.8 Score=38.07 Aligned_cols=32 Identities=34% Similarity=0.617 Sum_probs=24.4
Q ss_pred ccEEEEccChhHHHHHH-h---cCCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKE-M---GKGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~---~~g~~v-~v~Rg~~~ 81 (308)
|||+|||+|.||+.++- + +.+.++ ++.+.+..
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~ 37 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEK 37 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEccccc
Confidence 68999999999999994 3 235454 88887543
No 167
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=60.61 E-value=10 Score=31.25 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=23.3
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCc-E-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQD-L-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~-v-~v~Rg~ 79 (308)
+..+++|||+|++|...+... .|.. + ++.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 447899999999999999532 2333 4 888863
No 168
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=60.58 E-value=26 Score=33.62 Aligned_cols=64 Identities=23% Similarity=0.256 Sum_probs=37.1
Q ss_pred ccccEEEEccChhHHHHHHhc---CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG---KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMI 121 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~---~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl~ 121 (308)
...++.|||.|+||..+++++ -|-.| ...|...-.......+ +-.++++++++ .++|.+.=-+.
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~----~~~~l~ell~~------sDvv~lh~plt 211 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNA----RYCDLDTLLQE------SDFVCIILPLT 211 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCc----EecCHHHHHHh------CCEEEEeCCCC
Confidence 347899999999999999753 25455 3444321100000011 12378888743 57777765554
No 169
>PLN02985 squalene monooxygenase
Probab=60.52 E-value=11 Score=38.52 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=25.4
Q ss_pred ccccEEEEccChhHHHHHH-hc-CCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKE-MG-KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg~ 79 (308)
...+|+|||+|-.|...|. +. .|.+| ++-|..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 4468999999999999994 43 57777 888864
No 170
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=60.46 E-value=9.8 Score=37.65 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=25.9
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcE-EecCCCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDL-LVKRGELVP 82 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v-~v~Rg~~~~ 82 (308)
+|||+|||+|.-|...|.. ..++++ +|.|+.++.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 3799999999999988843 224555 999987654
No 171
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=60.44 E-value=9.8 Score=36.15 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=23.6
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
-.++|||+|-+|...|..+ .|..| +|-|+.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 3589999999999999542 46676 888874
No 172
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=59.97 E-value=9.6 Score=34.03 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=23.3
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
|+++|+|+ |.+|..++... .|+.| ++.|..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 67899996 88999999653 57776 788864
No 173
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=59.87 E-value=11 Score=37.26 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=25.2
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
...++|||+|..|...|..+ .|..| ++-|+.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 46889999999999999543 57887 888874
No 174
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=59.80 E-value=12 Score=37.28 Aligned_cols=34 Identities=35% Similarity=0.610 Sum_probs=26.8
Q ss_pred cccEEEEccChhHHHHH-HhcC-CCcE-EecCCCCCC
Q 021746 49 VAPAAIVGGGRVGTALK-EMGK-GQDL-LVKRGELVP 82 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a-~~~~-g~~v-~v~Rg~~~~ 82 (308)
...++|||+|-.|+.+| ++++ |..| +|-|.-+-|
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EP 81 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEP 81 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccc
Confidence 34689999999999999 5664 7777 999976543
No 175
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=59.79 E-value=9.8 Score=36.42 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=24.5
Q ss_pred cccEEEEccChhHHHHHHh--cCCC-cE-EecCCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEM--GKGQ-DL-LVKRGELV 81 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~--~~g~-~v-~v~Rg~~~ 81 (308)
.+||+|||+|.||..++-. ..|. ++ |+-+.+..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 3799999999999999853 2343 44 88886653
No 176
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=59.79 E-value=6.2 Score=37.65 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=22.2
Q ss_pred ccEEEEccChhHHHHHH-h---cCCCc-EEecCCCC
Q 021746 50 APAAIVGGGRVGTALKE-M---GKGQD-LLVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~---~~g~~-v~v~Rg~~ 80 (308)
+||+|||+|.||..++- + +-... +|+-+.+.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 79999999999999884 2 12223 48877654
No 177
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=59.79 E-value=12 Score=35.75 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.3
Q ss_pred ccccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL 80 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~ 80 (308)
..++++|||+|..|...|.. . .|.++ ++.|+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 34799999999999988854 2 46676 8888754
No 178
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=59.64 E-value=8.8 Score=41.07 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=24.5
Q ss_pred ccEEEEccChhHHHHHHh-c-C--CCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-K--GQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~--g~~v-~v~Rg~~ 80 (308)
|+|+|||+|.-|.++|-. . . |++| ++-|...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 799999999999999943 2 2 6777 8888654
No 179
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=59.63 E-value=14 Score=38.69 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=25.2
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+...++|||+|.+|...|..+ .|..| +|-|+.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 447899999999999999542 46676 888863
No 180
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=59.05 E-value=11 Score=38.07 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=24.9
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
...++|||+|..|...|.-+ +|..| +|-|+.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 36899999999999999643 46676 899874
No 181
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=58.10 E-value=10 Score=37.76 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=22.3
Q ss_pred ccEEEEccChhHHHHHH---h-----cCCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKE---M-----GKGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~---~-----~~g~~v-~v~Rg~~ 80 (308)
|||+|||+|.+|..++- + .+|+.| ++.|.+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e 40 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEE 40 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHH
Confidence 68999999999986432 2 246565 8888753
No 182
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=58.08 E-value=11 Score=33.99 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=24.0
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.|+|+|+|+ |.||..++..+ .|+.| .+.|..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 478999996 99999999643 57776 667763
No 183
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=57.98 E-value=12 Score=32.53 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=24.3
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..++++|+|+ |.+|...+... .|..+ ++.|+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3478999997 99999988653 46666 778863
No 184
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=57.89 E-value=11 Score=35.84 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=23.9
Q ss_pred cEEEEccChhHHHHHHhc--CC-CcE-EecCCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KG-QDL-LVKRGEL 80 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g-~~v-~v~Rg~~ 80 (308)
.|+|||+|-.|...|..+ +| .+| ++-|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 379999999999999653 58 887 8887643
No 185
>PTZ00117 malate dehydrogenase; Provisional
Probab=57.81 E-value=11 Score=36.00 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=24.0
Q ss_pred cccEEEEccChhHHHHHHhc--CC-CcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KG-QDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g-~~v-~v~Rg~~ 80 (308)
.+||+|||+|.||..++... .| .++ |+.+.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 47999999999999998542 33 344 8888654
No 186
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=57.60 E-value=7.1 Score=37.30 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=16.3
Q ss_pred ccEEEEcc-ChhHHHHHHh
Q 021746 50 APAAIVGG-GRVGTALKEM 67 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~ 67 (308)
|||+|||+ |.||.-++-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~ 19 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLL 19 (310)
T ss_pred CEEEEECCCCHHHHHHHHH
Confidence 79999999 9999999953
No 187
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=56.89 E-value=9.8 Score=38.36 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=25.1
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.||.=||.+. -|.+| +|-|+.++
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4789999999999888642 25666 89888775
No 188
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=56.87 E-value=24 Score=33.56 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=34.4
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEe
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQ 117 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQ 117 (308)
..++.|||.|+||..+|++. -|-.| .+.|... +.+ .+ + +-.+|+++++. .++|.+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~-~~~-~~-~----~~~~l~ell~~------sDvv~lh 203 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGK-NKN-EE-Y----ERVSLEELLKT------SDIISIH 203 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcc-ccc-cC-c----eeecHHHHhhc------CCEEEEe
Confidence 47899999999999999764 25455 4555311 111 11 1 22378888733 4666664
No 189
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=56.70 E-value=8.1 Score=35.84 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=16.7
Q ss_pred ccEEEEccChhHHHHHHh
Q 021746 50 APAAIVGGGRVGTALKEM 67 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~ 67 (308)
||++|||.|.||..+++.
T Consensus 2 ~rVgIiG~G~iG~~~~~~ 19 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLEL 19 (265)
T ss_pred cEEEEECCCHHHHHHHHH
Confidence 799999999999999975
No 190
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=56.65 E-value=13 Score=32.95 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=22.2
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|||.|++|+.++.. |.|+-+++-+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4689999999999999954 33443466665
No 191
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=56.63 E-value=14 Score=35.69 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=22.3
Q ss_pred ccEEEEccChhHHHHHH-hc--CC-CcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKE-MG--KG-QDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~--~g-~~v-~v~Rg~ 79 (308)
-.|+|||+|-+|...|. +. .| .+| ++-|+.
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 36799999999999984 32 26 356 888863
No 192
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=56.61 E-value=12 Score=35.43 Aligned_cols=29 Identities=38% Similarity=0.579 Sum_probs=22.7
Q ss_pred cEEEEccChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 51 PAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
.|+|||+|-.|..+|.. . +|.+| ++-|..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 37999999999999954 3 57887 777764
No 193
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=56.46 E-value=8.6 Score=32.66 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=16.3
Q ss_pred ccEEEEccChhHHHHHHh
Q 021746 50 APAAIVGGGRVGTALKEM 67 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~ 67 (308)
|+|+|+|.|++|..+.+.
T Consensus 1 ikv~I~G~GriGr~v~~~ 18 (149)
T smart00846 1 IKVGINGFGRIGRLVLRA 18 (149)
T ss_pred CEEEEECcCHHHHHHHHH
Confidence 689999999999999875
No 194
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=56.17 E-value=12 Score=35.55 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=23.0
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCc--E-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQD--L-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~--v-~v~Rg~ 79 (308)
|||+|+|+ |.||..++... .|+. + ++.|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 79999998 99999999642 2332 4 888854
No 195
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=55.99 E-value=12 Score=35.73 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=24.0
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~ 80 (308)
.+|+|||+|..|...|.. . .|.+| ++-|+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 578999999999999954 3 46776 8887643
No 196
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=55.94 E-value=12 Score=35.18 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=25.0
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
...+++|+|.|++|..++..+ .|..| ++.|..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 447899999999999999753 46666 777764
No 197
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=55.83 E-value=12 Score=37.35 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=24.9
Q ss_pred ccccEEEEccChhHHHHHHhc-CCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG-KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~-~g~~v-~v~Rg~ 79 (308)
..|+|.|||.|-||.-.|... .|+.| .+.+++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~~~~V~g~D~~~ 38 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGKSRQVVGFDVNK 38 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhcCCEEEEEeCCH
Confidence 349999999999999999653 46666 666644
No 198
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=55.72 E-value=15 Score=36.47 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=25.3
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.++++|||+|..|...|..+ .|+.| ++.|...+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 47899999999999888542 46776 88887543
No 199
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=55.45 E-value=12 Score=38.14 Aligned_cols=31 Identities=23% Similarity=0.564 Sum_probs=24.5
Q ss_pred cccEEEEccChhHHHHHHh--cCCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEM--GKGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~ 79 (308)
+.+|.|||+|.+|.-+|.. .+|++| ++.|..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4689999999999999964 368887 776643
No 200
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=55.22 E-value=12 Score=35.50 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=24.5
Q ss_pred ccccEEEEccChhHHHHHHhc--CC-CcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KG-QDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g-~~v-~v~Rg~ 79 (308)
..++++|||+|.+|...+.+. .| +++ ++.|..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 468999999999999988653 23 455 788863
No 201
>PRK07023 short chain dehydrogenase; Provisional
Probab=54.89 E-value=13 Score=32.86 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=23.4
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
|+++|.|+ |.||..++... .|..| ++.|..
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~ 35 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSR 35 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCc
Confidence 67899998 89999999653 57676 778864
No 202
>PRK11445 putative oxidoreductase; Provisional
Probab=54.62 E-value=13 Score=35.40 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=24.0
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
+.|+|||+|..|...|..+ + .+| ++-|...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 5789999999999999653 4 555 8888754
No 203
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=54.00 E-value=15 Score=37.21 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=24.6
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
...++|||+|.+|...|.-+ +|-.| +|-|+.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 36799999999999999643 46666 898863
No 204
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=53.51 E-value=12 Score=37.88 Aligned_cols=72 Identities=8% Similarity=0.077 Sum_probs=49.0
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCCCC-------------C----CC---------CCCcEEEEecCc-cHH
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGELV-------------P----LD---------FEGPIFVCTRND-DLE 99 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~~-------------~----~~---------~~~~IlvatK~~-dl~ 99 (308)
++|.|||.|.+|+-+|.. . +|+.| +..|.... . .+ .++.|++++.+. .++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 579999999999999964 3 68887 78884321 0 01 023478886664 778
Q ss_pred HHHHhCCCC--CCCeEEEEecCCC
Q 021746 100 AVLEAAPRS--RWNDLVFFQNGMI 121 (308)
Q Consensus 100 ~~l~~l~~~--~~t~IV~LQNGl~ 121 (308)
++++.+.+. .++.||-.-|+.-
T Consensus 82 ~vi~~l~~~L~~g~iIID~gn~~~ 105 (470)
T PTZ00142 82 ETIDNLLPLLEKGDIIIDGGNEWY 105 (470)
T ss_pred HHHHHHHhhCCCCCEEEECCCCCH
Confidence 888777763 3457777777764
No 205
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=53.49 E-value=9.4 Score=36.35 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=21.5
Q ss_pred cEEEEccChhHHHHHHh-c----CCCcEEecCCCC
Q 021746 51 PAAIVGGGRVGTALKEM-G----KGQDLLVKRGEL 80 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~-~----~g~~v~v~Rg~~ 80 (308)
||+|||+|.||..+|-. . .+.-+++-..+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 35 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG 35 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 68999999999999843 2 222248877654
No 206
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=53.40 E-value=16 Score=35.25 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=25.8
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..|+|+|.|+ |-||..++..+ .|+.| .+.|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 4589999998 99999999753 57777 777753
No 207
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=53.23 E-value=16 Score=33.47 Aligned_cols=28 Identities=29% Similarity=0.454 Sum_probs=20.2
Q ss_pred cEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 51 PAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
||.|||+|++|+.++.. |-|+-++|-+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999953 33443456554
No 208
>PRK13243 glyoxylate reductase; Reviewed
Probab=53.22 E-value=15 Score=35.30 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=23.8
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
...++.|||.|.||..+|.++ .|..| .+.|.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~ 182 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRT 182 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 357999999999999999763 46566 55664
No 209
>PRK06834 hypothetical protein; Provisional
Probab=53.07 E-value=14 Score=37.36 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=23.9
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
-+|+|||+|.+|..+|.. . +|.+| +|-|..
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 478999999999999954 2 57776 788754
No 210
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=53.05 E-value=10 Score=29.83 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=15.3
Q ss_pred ccEEEEccChhHHHHHH
Q 021746 50 APAAIVGGGRVGTALKE 66 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~ 66 (308)
|+|+|||.|.+|..+..
T Consensus 1 i~v~iiG~G~~g~~~~~ 17 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLR 17 (120)
T ss_dssp EEEEEESTSHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHH
Confidence 68999999999999983
No 211
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=52.70 E-value=14 Score=38.89 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=22.7
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..++.|||+|++|++.+++ |-|+-++|-.+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 4688999999999999974 33444577765
No 212
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=52.69 E-value=10 Score=35.61 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=16.8
Q ss_pred ccEEEEccChhHHHHHHh
Q 021746 50 APAAIVGGGRVGTALKEM 67 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~ 67 (308)
+||.|||.|+||.+++..
T Consensus 3 ~rvgiIG~GaIG~~va~~ 20 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAG 20 (267)
T ss_pred eEEEEECccHHHHHHHHH
Confidence 799999999999999974
No 213
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=52.48 E-value=18 Score=36.21 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=24.9
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.++++|||+|..|...|..+ .|+.| ++.|+..+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 47899999999998888542 47776 88886543
No 214
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=52.24 E-value=16 Score=33.51 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=22.0
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|+|+|++|+..+.. |-|+-+++-+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3689999999999999854 33443466665
No 215
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=52.17 E-value=17 Score=35.60 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=24.3
Q ss_pred ccEEEEccChhHHHHHHh----cCCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEM----GKGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~----~~g~~v-~v~Rg~~~ 81 (308)
|+++|||+|.-|...|.. +.+.++ +|.++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 789999999999988843 223355 99998764
No 216
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=52.14 E-value=19 Score=29.67 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=22.8
Q ss_pred ccccEEEEccChhHHHHHHh-c-CC-CcE-EecCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM-G-KG-QDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~-~-~g-~~v-~v~Rg 78 (308)
+.++++|+|.|.+|..++.. . .| ..+ ++.|.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 34789999999999999954 2 33 455 66665
No 217
>PRK10015 oxidoreductase; Provisional
Probab=52.06 E-value=17 Score=35.90 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=25.5
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
...++|||+|..|...|..+ .|.+| +|-|++.
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 36889999999999999542 57787 8988754
No 218
>PLN02852 ferredoxin-NADP+ reductase
Probab=51.89 E-value=22 Score=36.25 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=24.9
Q ss_pred ccccEEEEccChhHHHHHHh-c---CCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM-G---KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~-~---~g~~v-~v~Rg~ 79 (308)
...+|+|||+|.-|.+-|.. . .|+.| ++-|..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 34789999999999998853 2 47777 888874
No 219
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=51.86 E-value=16 Score=34.96 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=20.4
Q ss_pred cEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 51 PAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
||.|||+|++|+.++.. |-|.-+++-.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 58999999999999953 44444466554
No 220
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=51.83 E-value=17 Score=34.01 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=21.7
Q ss_pred ccEEEEcc-ChhHHHHHHh-c-CCCcE-EecC
Q 021746 50 APAAIVGG-GRVGTALKEM-G-KGQDL-LVKR 77 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~R 77 (308)
|+++|+|+ |-||..++.. . .|+.| .+.|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEec
Confidence 78999995 9999999964 3 57776 5554
No 221
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=51.59 E-value=16 Score=36.59 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=23.2
Q ss_pred ccEEEEccChhHHHHHH-hc-CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKE-MG-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg~ 79 (308)
++|+|||+|-+|+..|- +. .|..| ++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 68999999999999994 32 46776 887643
No 222
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=51.58 E-value=16 Score=33.00 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=21.0
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKR 77 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~R 77 (308)
..+|+|+|+|++|+.++.. |.|+-++|-.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3689999999999999954 3343335544
No 223
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=51.52 E-value=17 Score=34.82 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=20.1
Q ss_pred cEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 51 PAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
||.|||+|++|+..+.. |-|+-++|-.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999964 33433355543
No 224
>PRK08328 hypothetical protein; Provisional
Probab=51.47 E-value=17 Score=33.03 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=21.7
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|+|+|++|+..+.. |.|+-++|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3689999999999999854 34443466443
No 225
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=51.37 E-value=18 Score=32.49 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=21.6
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|||+|++|+.++.. |.|+-+++-..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3689999999999999953 33433466554
No 226
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=51.34 E-value=28 Score=32.58 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=37.5
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCCCC-C---------C----------CCCCcEEEEecCc-cHHHHHHhC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGELV-P---------L----------DFEGPIFVCTRND-DLEAVLEAA 105 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~~-~---------~----------~~~~~IlvatK~~-dl~~~l~~l 105 (308)
|+|..||.|++|.-+.++ . +||++ ...|+..- . . .++..|.+-+..- -++++++++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 789999999999999965 3 68886 55565421 0 0 0123356666653 566666666
Q ss_pred CC
Q 021746 106 PR 107 (308)
Q Consensus 106 ~~ 107 (308)
.+
T Consensus 81 a~ 82 (300)
T COG1023 81 AP 82 (300)
T ss_pred Hh
Confidence 66
No 227
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=51.23 E-value=16 Score=36.14 Aligned_cols=27 Identities=44% Similarity=0.736 Sum_probs=21.8
Q ss_pred cEEEEccChhHHHHHH-hc-----CCCcE-EecC
Q 021746 51 PAAIVGGGRVGTALKE-MG-----KGQDL-LVKR 77 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~-~~-----~g~~v-~v~R 77 (308)
.|+|||+|-+|..+|. +. .|..| +|-|
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 4799999999999994 43 47777 8877
No 228
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=51.10 E-value=16 Score=36.24 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=20.1
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
+|+|||+|+-|.+-|-.. .|..| ++-|++.+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~ 35 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRV 35 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 579999999998888443 56777 99998764
No 229
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=50.79 E-value=17 Score=32.72 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=23.6
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
.++|||+|..|...|..+ .|.+| ++-|+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 579999999999999542 46777 8888754
No 230
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=50.72 E-value=17 Score=35.37 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=22.9
Q ss_pred ccEEEEccChhHHHHHHhc--CC--CcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KG--QDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g--~~v-~v~Rg~~~ 81 (308)
|+|+|||+|--|..-|..+ +| ++| ++-...++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRL 37 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 6899999998888888543 34 666 66665443
No 231
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=50.71 E-value=16 Score=37.12 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=25.1
Q ss_pred cccEEEEccChhHHHHHHhc----CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG----KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~----~g~~v-~v~Rg~~ 80 (308)
.+.|+|||+|-||..+|..+ .|.+| ++-|...
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 36789999999999999643 35566 8998754
No 232
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=50.56 E-value=16 Score=34.65 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=22.3
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.|+|||+|-+|...|..+ .|..| +|-|+.
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 579999999999998432 46666 888854
No 233
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=50.55 E-value=17 Score=32.92 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=22.9
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+++|||+|..|...|..+ .|.+| ++-|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 689999999999998542 46776 888764
No 234
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=50.53 E-value=19 Score=37.74 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=24.5
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
.++++|||+|..|...|..+ .|+.| ++.+...
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 37899999999998888543 46776 8877643
No 235
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=50.33 E-value=17 Score=33.02 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=22.2
Q ss_pred cEEEEcc-ChhHHHHHHhc--CCCcE-EecCC
Q 021746 51 PAAIVGG-GRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 51 ~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
||+|+|+ |-||+.++... .|++| .+.|.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~ 32 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS 32 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc
Confidence 5789996 99999999643 57887 67775
No 236
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=50.31 E-value=15 Score=33.76 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=23.3
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
|++.|.|+ |.||..++..+ .|+.| .+.|..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~ 34 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPT 34 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecC
Confidence 67899996 99999999643 46666 777764
No 237
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=50.20 E-value=17 Score=36.17 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=22.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
|+++|||+|.-|..-|... .|..| +|-|+
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~ 32 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA 32 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 7999999999888777542 46666 89886
No 238
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=50.07 E-value=2.8e+02 Score=27.83 Aligned_cols=170 Identities=28% Similarity=0.389 Sum_probs=90.1
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-----------EecCCCCC-------------------C--CCC-----CCcEE
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-----------LVKRGELV-------------------P--LDF-----EGPIF 90 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-----------~v~Rg~~~-------------------~--~~~-----~~~Il 90 (308)
++|.|||.|=||.-+|.+ + +|.+| -+.||+.- . .|+ .+.++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 899999999999999864 2 34444 12334320 0 111 14467
Q ss_pred EEecCc-------c---HHHHHHhCCCC-CCCeEEEEecCCC--------hhHHhhc-CCCCCceeEEEEEeeccCCCCC
Q 021746 91 VCTRND-------D---LEAVLEAAPRS-RWNDLVFFQNGMI--------EPWLESK-GLKDANQVLAYFAVSKLGERPI 150 (308)
Q Consensus 91 vatK~~-------d---l~~~l~~l~~~-~~t~IV~LQNGl~--------~~~l~~~-~~~~~~~v~~~~~~~~~G~~~~ 150 (308)
|||... | ++++.+.+.+. .+-++|.+-.-+- .+.++.. ++.-.... |++-+ |. +.-
T Consensus 90 I~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df--~lays-PE-Rv~ 165 (436)
T COG0677 90 ICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF--YLAYS-PE-RVL 165 (436)
T ss_pred EEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee--eEeeC-cc-ccC
Confidence 887552 3 45566666663 3457887877662 2344432 22222232 22211 11 111
Q ss_pred CCceec----CC---CCCcccccccHHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhhhhhhHhhcCccccccccc
Q 021746 151 DGKTDT----NP---EGLTAAYGKWASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHTGATVGVVEKE 223 (308)
Q Consensus 151 dg~i~~----~g---~g~~~~~G~~a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~N~ltAl~~~~tvG~L~~~ 223 (308)
+|.+.+ ++ +|.+..+.+.+.+|.+.+-++ .|.+. +.+.+=-.||+ ++.
T Consensus 166 PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~--~~~vt---s~~tAEm~Kl~--------------------EN~ 220 (436)
T COG0677 166 PGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEG--VIPVT---SARTAEMVKLT--------------------ENT 220 (436)
T ss_pred CCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEE--EEEcC---ChHHHHHHHHH--------------------hhh
Confidence 233221 11 233444445556666666665 34332 45554444543 344
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCh
Q 021746 224 YRSEVSALIAELALAAAAEKGITFDP 249 (308)
Q Consensus 224 ~~~~~~~lm~Ev~avA~a~~Gv~l~~ 249 (308)
+|+.=-+|.+|+.-++.+ .|++.-+
T Consensus 221 fRdVNIALaNElali~~~-~GIdvwe 245 (436)
T COG0677 221 FRDVNIALANELALICNA-MGIDVWE 245 (436)
T ss_pred hhHHHHHHHHHHHHHHHH-hCCcHHH
Confidence 677778888888888886 6876543
No 239
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=49.99 E-value=11 Score=36.20 Aligned_cols=62 Identities=26% Similarity=0.416 Sum_probs=40.1
Q ss_pred ccccEEEEccChhHHHHHHhcC--CCcE-EecCCCCCCCC-CC-CcEEEEecCccHHHHHHhCCCCCCCeEEEEecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMGK--GQDL-LVKRGELVPLD-FE-GPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMI 121 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~~--g~~v-~v~Rg~~~~~~-~~-~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl~ 121 (308)
..+++.|||.|+||..+|++++ |-.+ .-.|... |.. .. +.-+ .++++.+++ .++|.+.=.+.
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y-----~~l~ell~~------sDii~l~~Plt 211 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARY-----VDLDELLAE------SDIISLHCPLT 211 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCcee-----ccHHHHHHh------CCEEEEeCCCC
Confidence 4589999999999999997753 4455 6666654 321 11 1112 238887743 57887776665
No 240
>PRK08017 oxidoreductase; Provisional
Probab=49.67 E-value=18 Score=32.11 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=22.8
Q ss_pred cEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 51 PAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+++|.|+ |.||..++... .|..| .+.|..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6899998 99999999753 46666 777763
No 241
>PRK07574 formate dehydrogenase; Provisional
Probab=49.54 E-value=17 Score=35.82 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=39.7
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCC-CCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPL-DFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMI 121 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~-~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl~ 121 (308)
..+++.|||.|+||..+++++ .|..| .+.|...-.. .....+ +...+++++++ ..++|.+.--+.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~---~~~~~l~ell~------~aDvV~l~lPlt 259 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL---TYHVSFDSLVS------VCDVVTIHCPLH 259 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc---eecCCHHHHhh------cCCEEEEcCCCC
Confidence 458999999999999999764 35556 5566431111 101111 11246888762 357887777665
No 242
>PRK05884 short chain dehydrogenase; Provisional
Probab=49.30 E-value=19 Score=31.81 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=22.9
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
|+++|.|+ |.||..++... .|+.| ++.|++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899987 89999999643 46776 777763
No 243
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=49.29 E-value=19 Score=33.75 Aligned_cols=30 Identities=33% Similarity=0.371 Sum_probs=21.5
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|+|.|+||++.+.. |-|+-++|-..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3689999999999999953 22443466554
No 244
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=49.17 E-value=16 Score=36.31 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=19.7
Q ss_pred ccEEEEccChhHHHHH-Hhc-CCCcE
Q 021746 50 APAAIVGGGRVGTALK-EMG-KGQDL 73 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a-~~~-~g~~v 73 (308)
-+|+|||+|=+|.+.| ++. .|.++
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v 28 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDV 28 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeE
Confidence 4789999999999999 554 47787
No 245
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=49.01 E-value=21 Score=34.25 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=23.3
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
.++|||+|..|...|..+ .|..| +|-+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 379999999999999542 47777 8887653
No 246
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=49.01 E-value=33 Score=34.94 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=24.5
Q ss_pred ccccEEEEccChhHHHHHHhc--C-C-CcE-EecCCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--K-G-QDL-LVKRGEL 80 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~-g-~~v-~v~Rg~~ 80 (308)
....|+|||+|-+|...|..+ . + .+| ++-|...
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 346899999999999999643 2 2 355 8988753
No 247
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=48.93 E-value=22 Score=32.73 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=25.3
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
...++|||+|..|...|..+ .|.+| ++-|+..+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF 56 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 46789999999999888543 46666 88887554
No 248
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=48.92 E-value=22 Score=35.34 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=24.0
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|||+|..|...|..+ .|++| ++.+..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 47899999999998888542 46776 888764
No 249
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=48.59 E-value=12 Score=34.58 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=16.3
Q ss_pred ccEEEEccChhHHHHHHh
Q 021746 50 APAAIVGGGRVGTALKEM 67 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~ 67 (308)
|||.|||.|.+|..++..
T Consensus 2 mrIgIIG~G~iG~~ia~~ 19 (265)
T PRK13304 2 LKIGIVGCGAIASLITKA 19 (265)
T ss_pred CEEEEECccHHHHHHHHH
Confidence 799999999999999953
No 250
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=48.55 E-value=19 Score=38.06 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=24.7
Q ss_pred ccccEEEEccChhHHHHHH-hc-CCCcE-EecCC
Q 021746 48 QVAPAAIVGGGRVGTALKE-MG-KGQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg 78 (308)
...+|+|||+|-.|..+|- +. .|.+| ++-|.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~ 113 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKD 113 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 4479999999999999994 43 57777 77775
No 251
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=48.54 E-value=19 Score=32.84 Aligned_cols=30 Identities=37% Similarity=0.416 Sum_probs=21.1
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|+|.|+||++.+.. |-|+-++|-..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3689999999999999953 33333355543
No 252
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=48.52 E-value=17 Score=38.12 Aligned_cols=31 Identities=39% Similarity=0.538 Sum_probs=24.5
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++|+|||+|-+|...|..+ .|.+| ++-|+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 36899999999999999532 47777 888864
No 253
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=48.50 E-value=20 Score=32.70 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=24.0
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
|+|.|.|+ |-||+.++..+ .|++| .+.|...
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 55899995 99999999653 48887 7777643
No 254
>PRK06153 hypothetical protein; Provisional
Probab=48.28 E-value=16 Score=36.18 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.1
Q ss_pred ccccEEEEccChhHHHHHHh
Q 021746 48 QVAPAAIVGGGRVGTALKEM 67 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~ 67 (308)
...+|+|||+|++|++.+.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~ 194 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDL 194 (393)
T ss_pred hhCcEEEEcCCccHHHHHHH
Confidence 34799999999999999854
No 255
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=48.11 E-value=15 Score=34.22 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=22.2
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
|||.|+|+ |-||+.+.... .|.++ .+.|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS 33 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch
Confidence 89999995 99999999653 35555 55555
No 256
>PLN02928 oxidoreductase family protein
Probab=47.87 E-value=18 Score=34.93 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=23.2
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
..++.|||.|.||..+++++ .|-.| .+.|.
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRS 191 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence 47899999999999999764 36666 55553
No 257
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=47.87 E-value=20 Score=33.97 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=23.0
Q ss_pred cEEEEccChhHHHHHH-hc-CCCcE-EecCCCC
Q 021746 51 PAAIVGGGRVGTALKE-MG-KGQDL-LVKRGEL 80 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg~~ 80 (308)
.++|||+|-+|...|- +. .|..| ++-|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5799999999999884 32 46666 8888753
No 258
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=47.53 E-value=23 Score=34.84 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=23.9
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
++++|||+|.-|...|..+ .|..| ++-++.++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 5789999999999999543 36666 77775444
No 259
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=47.38 E-value=20 Score=34.37 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=22.9
Q ss_pred ccEEEEccChhHHHHHHh-c-CC--CcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KG--QDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g--~~v-~v~Rg~ 79 (308)
.+|+|||+|-.|...|.. . +| .+| ++-|..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 368999999999999953 2 34 666 888754
No 260
>PLN02572 UDP-sulfoquinovose synthase
Probab=47.11 E-value=27 Score=34.74 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=22.1
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--CCCcE-Eec
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--KGQDL-LVK 76 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~ 76 (308)
+.|+|.|.|+ |-||..+++.+ .|++| .+.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 4478999996 99999999653 57777 443
No 261
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.10 E-value=19 Score=36.31 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=23.6
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
++++|||+|+-|..-++-+ .|+++ ..-|..
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 7899999999999999643 57775 677744
No 262
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=46.98 E-value=19 Score=30.73 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=21.1
Q ss_pred ccEEEEccChhHHHHHHhc-CCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKEMG-KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~-~g~~v-~v~Rg 78 (308)
|||.|-|.|+||..+.+.. ..+++ +|+=+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaIn 31 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAIN 31 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEe
Confidence 6899999999999999753 33454 44433
No 263
>PLN02463 lycopene beta cyclase
Probab=46.76 E-value=33 Score=34.35 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=23.5
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..++|||+|..|..+|... .|..| ++.+..
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 5789999999999999543 47777 777753
No 264
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=46.38 E-value=15 Score=33.92 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=17.2
Q ss_pred ccEEEEccChhHHHHHHhc
Q 021746 50 APAAIVGGGRVGTALKEMG 68 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~ 68 (308)
|++.|||.|+||..+..+.
T Consensus 1 l~vgiVGcGaIG~~l~e~v 19 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELV 19 (255)
T ss_pred CeEEEEeccHHHHHHHHHH
Confidence 6899999999999999864
No 265
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=46.38 E-value=24 Score=30.77 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=23.2
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
++++|.|+ |.+|..++... +|+.| ++.|+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 67999997 89999999642 46666 777764
No 266
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=46.02 E-value=24 Score=32.25 Aligned_cols=30 Identities=13% Similarity=0.346 Sum_probs=23.7
Q ss_pred cEEEEcc-ChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 51 PAAIVGG-GRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 51 ~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
+|+|+|+ |.||+.+...+ .|+.| .+.|+..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~ 34 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSS 34 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4789998 99999999643 47777 8888754
No 267
>PLN02778 3,5-epimerase/4-reductase
Probab=45.95 E-value=27 Score=32.58 Aligned_cols=27 Identities=26% Similarity=0.387 Sum_probs=21.4
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--CCCcEE
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--KGQDLL 74 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~g~~v~ 74 (308)
..|+|.|.|+ |-||+.+.+.+ .|++|.
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~ 37 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFH 37 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEE
Confidence 4499999996 99999999753 577773
No 268
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=45.80 E-value=20 Score=35.22 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=23.1
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKR 77 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~R 77 (308)
...++.|||.|.||+.+++++ -|..| ...|
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp 147 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEALGIKTLLCDP 147 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence 457999999999999999764 36666 4443
No 269
>PRK12831 putative oxidoreductase; Provisional
Probab=45.70 E-value=26 Score=35.09 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=23.4
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|||+|..|...|..+ .|++| ++-+..
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 47899999999998888432 46777 777653
No 270
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=45.48 E-value=22 Score=33.76 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=15.0
Q ss_pred cEEEEccChhHHHHHHh
Q 021746 51 PAAIVGGGRVGTALKEM 67 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~ 67 (308)
||.|||+|++|+.++..
T Consensus 1 kVlVVGaGGlG~eilkn 17 (291)
T cd01488 1 KILVIGAGGLGCELLKN 17 (291)
T ss_pred CEEEECCCHHHHHHHHH
Confidence 58999999999999953
No 271
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=45.29 E-value=27 Score=25.31 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 54 IVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 54 IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
|||+|.-|.+.|..+ .|.+| ++-|...+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 899999999888543 47777 88887654
No 272
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=45.20 E-value=64 Score=32.28 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=50.3
Q ss_pred ccEEEEcc----ChhHHHHHHh----cC-CCcEEecCCCC-C---C---C--C---CCCcEEEEecCccHHHHHHhCCCC
Q 021746 50 APAAIVGG----GRVGTALKEM----GK-GQDLLVKRGEL-V---P---L--D---FEGPIFVCTRNDDLEAVLEAAPRS 108 (308)
Q Consensus 50 m~i~IiG~----G~vG~~~a~~----~~-g~~v~v~Rg~~-~---~---~--~---~~~~IlvatK~~dl~~~l~~l~~~ 108 (308)
-+|+|||+ |.+|..+.+. |. |..++|..+.. + + + | ..+.++|||....+.++++++...
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~ 87 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK 87 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc
Confidence 46899999 7789888853 33 55568877542 1 1 1 1 135689999999999999998875
Q ss_pred CCCeEEEEecCCC
Q 021746 109 RWNDLVFFQNGMI 121 (308)
Q Consensus 109 ~~t~IV~LQNGl~ 121 (308)
.-..++.+..|..
T Consensus 88 gv~~~vi~s~gf~ 100 (447)
T TIGR02717 88 GVKGAVVITAGFK 100 (447)
T ss_pred CCCEEEEECCCcc
Confidence 4456777766663
No 273
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=44.95 E-value=24 Score=32.39 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=22.6
Q ss_pred EEEEccChhHHHHHHhc--CCC-cE-EecCCCCCC
Q 021746 52 AAIVGGGRVGTALKEMG--KGQ-DL-LVKRGELVP 82 (308)
Q Consensus 52 i~IiG~G~vG~~~a~~~--~g~-~v-~v~Rg~~~~ 82 (308)
++|||+|.=|+.+|.++ .|. .| ++-+|...+
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred EEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 68999999999999654 343 45 999996654
No 274
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=44.63 E-value=26 Score=36.69 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=24.2
Q ss_pred cccEEEEccChhHHHHHH-hc-C-CCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKE-MG-K-GQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~-~~-~-g~~v-~v~Rg~ 79 (308)
.++|+|||+|..|..+|. +. . |.+| +|-|..
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 478999999999999995 33 2 6676 787754
No 275
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=44.42 E-value=23 Score=35.16 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=24.1
Q ss_pred ccccEEEEccChhHHHHHHhc--CC-CcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KG-QDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g-~~v-~v~Rg~ 79 (308)
...+++|||+|.+|...+..+ .| ..+ ++.|..
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 447899999999999999653 45 445 777753
No 276
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=44.38 E-value=3e+02 Score=26.56 Aligned_cols=22 Identities=5% Similarity=-0.135 Sum_probs=18.3
Q ss_pred CcEEEEecCcc-HHHHHHhCCCC
Q 021746 87 GPIFVCTRNDD-LEAVLEAAPRS 108 (308)
Q Consensus 87 ~~IlvatK~~d-l~~~l~~l~~~ 108 (308)
+.||+|+++.. +++++..+.+.
T Consensus 83 DvVIlaVP~~~~v~~Vl~~L~~~ 105 (342)
T PRK12557 83 EIHILFTPFGKKTVEIAKNILPH 105 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHhh
Confidence 57999999988 88998877764
No 277
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=44.24 E-value=23 Score=34.19 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=22.2
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
+++|||+|..|...|..+ .|.+| ++-|.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 579999999999999543 47777 77775
No 278
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=44.22 E-value=15 Score=35.53 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=21.8
Q ss_pred cccEEEEccChhHHHHHHhc-C-CCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG-K-GQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~-~-g~~v-~v~Rg 78 (308)
..++.|+|.|+||.++|.++ + |... .=.|.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~ 194 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRT 194 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeeccc
Confidence 46899999999999999764 2 5333 44453
No 279
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=44.14 E-value=20 Score=38.13 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=25.4
Q ss_pred ccccEEEEccChhHHHHHHh--cCCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM--GKGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~ 79 (308)
.+.+|+|||+|-+|.-+|.. .+|++| ++.+.+
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 34689999999999999965 368887 787754
No 280
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=44.12 E-value=24 Score=30.55 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=22.2
Q ss_pred ccccEEEEccChh-HHHHHHhc--CCCcE-EecCC
Q 021746 48 QVAPAAIVGGGRV-GTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~v-G~~~a~~~--~g~~v-~v~Rg 78 (308)
+.-+++|||+|.+ |...+.++ .|..+ ++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4579999999996 77677654 34444 77775
No 281
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=44.00 E-value=25 Score=32.53 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=24.0
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++|.|.|+ |-||..++..+ .|+.| .+.|..
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 478999995 99999999653 57776 566764
No 282
>PRK05866 short chain dehydrogenase; Provisional
Probab=43.90 E-value=31 Score=31.96 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=23.5
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
++++|.|+ |.||..++... .|..| ++.|+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 67899997 89999999653 57776 788864
No 283
>PLN02697 lycopene epsilon cyclase
Probab=43.52 E-value=38 Score=34.82 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=24.5
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
...++|||+|..|...|... .|.+| +|.++..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p 142 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 142 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc
Confidence 46899999999999999543 47777 7776533
No 284
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=43.09 E-value=23 Score=34.74 Aligned_cols=32 Identities=34% Similarity=0.611 Sum_probs=25.0
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..++++|+|.|.+|..++..+ .|+++ +|.+.+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 358899999999999999754 46666 776654
No 285
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=42.74 E-value=26 Score=34.46 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=25.2
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|.+| ++.|+.++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 5899999999999888642 35666 89987654
No 286
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=42.67 E-value=21 Score=36.56 Aligned_cols=30 Identities=37% Similarity=0.503 Sum_probs=24.4
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
-+++|+|.|++|..+++.+ .|+++ +|.+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 5899999999999999764 47776 777764
No 287
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=42.23 E-value=34 Score=34.32 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=23.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
.+++|||+|..|...|..+ .|+.| ++.+...
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 5899999999999988643 46776 7776643
No 288
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=42.13 E-value=33 Score=31.63 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=24.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
..++|||+|.-|...|..+ .|.+| ++-|....
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~ 60 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 5789999999999988543 47777 88876443
No 289
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=42.03 E-value=26 Score=34.78 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=23.7
Q ss_pred ccccEEEEccChhHHHHHHhc--CCC-cE-EecCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQ-DL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~-~v-~v~Rg 78 (308)
...+++|+|+|.+|.+.+... .|. ++ ++.|.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 457899999999999999653 454 45 77775
No 290
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=41.87 E-value=30 Score=32.83 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=24.4
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..|++.|.|+ |-||..+++.+ .|.+| .+.|..
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~ 44 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP 44 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 4589999995 89999999753 57776 556753
No 291
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=41.68 E-value=35 Score=25.65 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=26.6
Q ss_pred cccEEEEccChhHHHHHHhc--C-CCcE-EecCCCCCCCCCCCcEEEEecC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--K-GQDL-LVKRGELVPLDFEGPIFVCTRN 95 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~-g~~v-~v~Rg~~~~~~~~~~IlvatK~ 95 (308)
..+++|+|.|.+|...+.+. . +..+ ++.| +.++.||..
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------di~i~~~~~ 64 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------DILVTATPA 64 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------CEEEEcCCC
Confidence 46899999999999999653 3 3455 6666 345666643
No 292
>PRK07846 mycothione reductase; Reviewed
Probab=41.61 E-value=28 Score=34.68 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=25.3
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|.+| +|.|+.++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 5899999999999888643 35666 99998654
No 293
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=41.59 E-value=28 Score=31.85 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=21.2
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|||+|++|+..+.. |-|+-++|-.+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3689999999999999964 33333355543
No 294
>PRK06392 homoserine dehydrogenase; Provisional
Probab=41.49 E-value=19 Score=34.61 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.2
Q ss_pred ccEEEEccChhHHHHHHhc
Q 021746 50 APAAIVGGGRVGTALKEMG 68 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~ 68 (308)
|+|+|+|.|.||+.+++..
T Consensus 1 mrVaIiGfG~VG~~va~~L 19 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRII 19 (326)
T ss_pred CEEEEECCCHHHHHHHHHH
Confidence 6899999999999999863
No 295
>PRK06932 glycerate dehydrogenase; Provisional
Probab=41.37 E-value=28 Score=33.21 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=35.3
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGM 120 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl 120 (308)
..++.|||.|.||..++++. -|-.| .+.|.. .+ ... .+-.+|++++++ .++|.+.=-+
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~---~~---~~~--~~~~~l~ell~~------sDiv~l~~Pl 207 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG---AS---VCR--EGYTPFEEVLKQ------ADIVTLHCPL 207 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc---cc---ccc--cccCCHHHHHHh------CCEEEEcCCC
Confidence 47899999999999999764 25555 444321 11 000 122478888744 4677665433
No 296
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=41.28 E-value=28 Score=29.71 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEccChhHHHHHHhc--CCCc-E-EecCCCCC
Q 021746 53 AIVGGGRVGTALKEMG--KGQD-L-LVKRGELV 81 (308)
Q Consensus 53 ~IiG~G~vG~~~a~~~--~g~~-v-~v~Rg~~~ 81 (308)
+|||+|.-|...|..+ .|.+ + ++-|+..+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence 6999999999999542 4556 5 89997543
No 297
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.27 E-value=22 Score=34.52 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=23.8
Q ss_pred CCCCccCCCcccchhhcccccccccccEEEEccChhHHHHHH
Q 021746 25 FSKPRFAKPTPVSAFAMASFTTTQVAPAAIVGGGRVGTALKE 66 (308)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~m~i~IiG~G~vG~~~a~ 66 (308)
|.+|-|.. .+-+..+.+. -||.|||+|++|+-+-.
T Consensus 23 f~~~~f~~-~~e~l~~l~~------~kiLviGAGGLGCElLK 57 (422)
T KOG2015|consen 23 FNLDAFEP-SEENLEFLQD------CKILVIGAGGLGCELLK 57 (422)
T ss_pred CCCCCCCC-CHHHHHHHhh------CcEEEEccCcccHHHHH
Confidence 55555543 3334444554 68999999999998773
No 298
>PLN02576 protoporphyrinogen oxidase
Probab=41.26 E-value=34 Score=34.07 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=24.6
Q ss_pred ccccEEEEccChhHHHHHHhc--C-CCcE-EecCCCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--K-GQDL-LVKRGELV 81 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~-g~~v-~v~Rg~~~ 81 (308)
..++++|||+|--|...|..+ . |.+| ++-+..++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv 48 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV 48 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 347899999999888888543 4 6777 66665443
No 299
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=41.23 E-value=28 Score=33.85 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=22.7
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|+|+|++|+..+.. |.|+-++|-++
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4689999999999999853 34444477765
No 300
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=41.18 E-value=39 Score=35.15 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=22.8
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..|+|.|+ |.||..++..+ .|++| .+.|..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 46889997 89999999643 57777 677754
No 301
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=41.12 E-value=28 Score=32.40 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=15.3
Q ss_pred ccEEEEccChhHHHHHH
Q 021746 50 APAAIVGGGRVGTALKE 66 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~ 66 (308)
.+++|+|.|+||++-..
T Consensus 31 ~~V~VvGiGGVGSw~ve 47 (263)
T COG1179 31 AHVCVVGIGGVGSWAVE 47 (263)
T ss_pred CcEEEEecCchhHHHHH
Confidence 68899999999999884
No 302
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=41.07 E-value=19 Score=34.72 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=16.6
Q ss_pred ccEEEEccChhHHHHHHh
Q 021746 50 APAAIVGGGRVGTALKEM 67 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~ 67 (308)
+||+|+|+|+||..+++.
T Consensus 2 ikVaI~G~GrIGr~va~a 19 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADA 19 (341)
T ss_pred eEEEEECCCHHHHHHHHH
Confidence 789999999999999975
No 303
>PRK07208 hypothetical protein; Provisional
Probab=40.95 E-value=34 Score=33.92 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=23.4
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
+.++++|||+|--|..-|..+ .|.+| ++-+..+
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~ 38 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV 38 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 347899999998777777432 47777 6766544
No 304
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=40.63 E-value=27 Score=34.97 Aligned_cols=30 Identities=47% Similarity=0.549 Sum_probs=22.6
Q ss_pred hhcccccccccccEEEEccChhHHHHHH-hc
Q 021746 39 FAMASFTTTQVAPAAIVGGGRVGTALKE-MG 68 (308)
Q Consensus 39 ~~~~~~~~~~~m~i~IiG~G~vG~~~a~-~~ 68 (308)
.+...+++++.-.++|+|+|.||..+|+ ++
T Consensus 26 ~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~ 56 (481)
T KOG3855|consen 26 TASAKSTDTAKYDVVIVGGGPVGLALAAALG 56 (481)
T ss_pred ccccccCCcccCCEEEECCchHHHHHHHHhc
Confidence 3444555566678999999999999995 44
No 305
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=40.61 E-value=32 Score=29.23 Aligned_cols=29 Identities=21% Similarity=0.506 Sum_probs=21.3
Q ss_pred cEEEEccChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 51 PAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
+++|||+|.-|...|.. . .+..+ +|.+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999953 3 45666 775543
No 306
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=40.41 E-value=27 Score=35.68 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=47.6
Q ss_pred ccccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC--------------C---CC-------CC---CCcEEEEecCc-
Q 021746 48 QVAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL--------------V---PL-------DF---EGPIFVCTRND- 96 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~--------------~---~~-------~~---~~~IlvatK~~- 96 (308)
+.++|.+||.|.+|.-++.. . +|+.| +..|... . .. +. ++.|++|++++
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~ 84 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGA 84 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcH
Confidence 34789999999999999964 3 68877 7777421 0 10 11 34589999886
Q ss_pred cHHHHHHhCCCC--CCCeEEEEecCC
Q 021746 97 DLEAVLEAAPRS--RWNDLVFFQNGM 120 (308)
Q Consensus 97 dl~~~l~~l~~~--~~t~IV~LQNGl 120 (308)
.++++++.+.+. +.+.||=.-|.-
T Consensus 85 aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 85 PVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 667776665553 344555555543
No 307
>PRK06487 glycerate dehydrogenase; Provisional
Probab=40.27 E-value=27 Score=33.30 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=35.2
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGM 120 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl 120 (308)
..++.|||.|+||..+|++. -|-.| .+.|.. +.+ . .+..+|+++++. .++|.+.=-+
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~--~~~---~----~~~~~l~ell~~------sDiv~l~lPl 207 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPG--RPA---R----PDRLPLDELLPQ------VDALTLHCPL 207 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC--Ccc---c----ccccCHHHHHHh------CCEEEECCCC
Confidence 46899999999999999774 35555 444431 111 1 123478888743 4666665433
No 308
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=40.19 E-value=29 Score=35.04 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=22.9
Q ss_pred cEEEEccChhHHHHHHhc----CCCcE-EecCCC
Q 021746 51 PAAIVGGGRVGTALKEMG----KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~----~g~~v-~v~Rg~ 79 (308)
.++|||+|-+|...|..+ .|..| ++-|.+
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 579999999999999643 26666 888864
No 309
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=40.04 E-value=28 Score=33.29 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=24.6
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++.|||+|-+|+-+|... .|.+| +.-+.+
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 357999999999999999542 45777 776653
No 310
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=39.84 E-value=32 Score=34.18 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=24.6
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|.+| ++.|+.++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 5899999999998888542 35566 89887654
No 311
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=39.57 E-value=26 Score=36.50 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=24.3
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|+|.|++|...++++ +|+++ .|.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence 47999999999999999864 46665 666653
No 312
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=39.42 E-value=32 Score=34.22 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=25.3
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|.+| +|.|+..+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 5899999999999998653 35666 99998654
No 313
>PRK02106 choline dehydrogenase; Validated
Probab=39.36 E-value=34 Score=35.06 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=24.2
Q ss_pred ccEEEEccChhHHHHHHhc---CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG---KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~---~g~~v-~v~Rg~ 79 (308)
..++|||+|.-|+.+|.++ .|..| +|-+|.
T Consensus 6 ~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 6 YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 5789999999999999653 35666 888885
No 314
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=39.27 E-value=31 Score=32.52 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=24.1
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
...++.|+|.|.+|...+.++ .|..| ++.|.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 458999999999999999653 46666 66665
No 315
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=39.19 E-value=40 Score=32.59 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=22.6
Q ss_pred EEEEccChhHHHHHH-h--c-CCCcE-EecCCCCC
Q 021746 52 AAIVGGGRVGTALKE-M--G-KGQDL-LVKRGELV 81 (308)
Q Consensus 52 i~IiG~G~vG~~~a~-~--~-~g~~v-~v~Rg~~~ 81 (308)
++|||+|.-|..+|. + . .|..| +|-+....
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 699999999999994 4 2 36666 88665543
No 316
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.18 E-value=32 Score=34.41 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=25.0
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.=+|... .|.+| +|.|++++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 5899999999999998542 35666 89888754
No 317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=39.10 E-value=37 Score=34.20 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=24.5
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
..+++|||+|..|...|..+ .|..| ++.+..+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 36899999999999888543 46666 8877654
No 318
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=39.00 E-value=29 Score=36.98 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=25.4
Q ss_pred ccccEEEEccChhHHHHHHh--cCCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM--GKGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~ 79 (308)
.+.+|+|||+|-+|.-+|.. .+|.+| ++.+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 45789999999999999964 357877 777643
No 319
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=38.92 E-value=29 Score=33.66 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=42.2
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcEEec-CCC-CCC---C------C------CCCcEEEEecCccHHHHHH-hCCC-
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDLLVK-RGE-LVP---L------D------FEGPIFVCTRNDDLEAVLE-AAPR- 107 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v~v~-Rg~-~~~---~------~------~~~~IlvatK~~dl~~~l~-~l~~- 107 (308)
..+|.|||.|++|...|..+ .|.+|.+. |.. ..+ . + ..+.|++++...+-.+++. .+.+
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~ 95 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEEN 95 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhc
Confidence 46899999999999999653 57777443 432 211 0 0 1255777777654455542 1222
Q ss_pred CCCCeEEEEecCC
Q 021746 108 SRWNDLVFFQNGM 120 (308)
Q Consensus 108 ~~~t~IV~LQNGl 120 (308)
.....++.+--|.
T Consensus 96 MK~GaiL~f~hgf 108 (335)
T PRK13403 96 LREGQMLLFSHGF 108 (335)
T ss_pred CCCCCEEEECCCc
Confidence 2334566666665
No 320
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=38.91 E-value=30 Score=30.97 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=22.4
Q ss_pred ccEEEEcc-ChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
|+++|.|+ |+||..++.. . .|..| ++.|++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~ 34 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNE 34 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 68899997 6899999964 2 46666 777764
No 321
>PRK06436 glycerate dehydrogenase; Provisional
Probab=38.86 E-value=30 Score=32.84 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=36.6
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMI 121 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl~ 121 (308)
..++.|||.|.||..++++. .|..| .+.|... .+ +.. ....++++++++ .++|.+.--..
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~--~~--~~~---~~~~~l~ell~~------aDiv~~~lp~t 184 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYV--ND--GIS---SIYMEPEDIMKK------SDFVLISLPLT 184 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCc--cc--Ccc---cccCCHHHHHhh------CCEEEECCCCC
Confidence 47899999999999999764 36666 5665411 11 111 012367877633 46666655543
No 322
>PLN03139 formate dehydrogenase; Provisional
Probab=38.80 E-value=30 Score=34.11 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=38.3
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMI 121 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl~ 121 (308)
..+++.|||.|+||..+++++ .|..| .+.|.. .+.+.....- +....+++++++. .++|.+.--+.
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~-~~~~~~~~~g-~~~~~~l~ell~~------sDvV~l~lPlt 266 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK-MDPELEKETG-AKFEEDLDAMLPK------CDVVVINTPLT 266 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCC-cchhhHhhcC-ceecCCHHHHHhh------CCEEEEeCCCC
Confidence 458999999999999999764 36666 444432 1111100000 1123478888733 46776654443
No 323
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=38.77 E-value=27 Score=33.70 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=36.7
Q ss_pred cccEEEEccChhHHHHHHh-c-C-CCc-E-EecCCC--CC----C----CC------CCCcEEEEecC-ccHHHHHHhCC
Q 021746 49 VAPAAIVGGGRVGTALKEM-G-K-GQD-L-LVKRGE--LV----P----LD------FEGPIFVCTRN-DDLEAVLEAAP 106 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~-~-~-g~~-v-~v~Rg~--~~----~----~~------~~~~IlvatK~-~dl~~~l~~l~ 106 (308)
.+|++|||.|.||...+.. . . +-. + ++.|.. .+ + .+ ..+.|++|+.+ .+++.+.+.+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~~L~ 82 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAPYFA 82 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCHHHHHHHHH
Confidence 3899999999999988854 2 2 222 3 566653 11 1 01 12567888876 36666665555
Q ss_pred CC
Q 021746 107 RS 108 (308)
Q Consensus 107 ~~ 108 (308)
..
T Consensus 83 aG 84 (324)
T TIGR01921 83 QF 84 (324)
T ss_pred cC
Confidence 43
No 324
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=38.67 E-value=33 Score=34.20 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=23.9
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
++++|||+|.-|...|... .|..| +|-|+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 5789999999999998653 47777 888763
No 325
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=38.48 E-value=33 Score=33.91 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=25.7
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
..+++|||+|.+|.=++... .|.+| +|.|+.++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 36899999999999888642 36666 99888754
No 326
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=38.38 E-value=35 Score=33.17 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=46.0
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCCCCC------CCCC--------CcEEEEecCccHHHHHHhCCCCC--CC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVP------LDFE--------GPIFVCTRNDDLEAVLEAAPRSR--WN 111 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~------~~~~--------~~IlvatK~~dl~~~l~~l~~~~--~t 111 (308)
++.|||+|=-|..+|..+ .|+.| +|-|..|+- .|+. ||=+.=|.|..+=+-+.+.-.-. .-
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e~~~Y~h 82 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTEFNPYQH 82 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhhhhhhcc
Confidence 579999999999999753 47777 888888873 2221 45466666655555554433321 12
Q ss_pred eEEEEecCCC
Q 021746 112 DLVFFQNGMI 121 (308)
Q Consensus 112 ~IV~LQNGl~ 121 (308)
.++-+-||..
T Consensus 83 rVla~~ng~~ 92 (374)
T COG0562 83 RVLALVNGQL 92 (374)
T ss_pred ceeEEECCee
Confidence 5677777753
No 327
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=38.28 E-value=31 Score=34.05 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=25.1
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
-+++|||+|.+|.=+|... .|..| +|.|++++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l 183 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI 183 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 5789999999999999643 35566 99988654
No 328
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=38.07 E-value=23 Score=34.62 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=21.8
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|||+|++|+..+.. |.|+-+++-+.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4789999999999999954 33443466654
No 329
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=37.98 E-value=34 Score=35.84 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=24.2
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
.+++|||+|..|...|..+ .|+.| ++-|...
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6899999999999988543 46776 7877644
No 330
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=37.94 E-value=35 Score=32.78 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=25.1
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|.+| +|.|+.++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 5899999999999999542 45666 89888654
No 331
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=37.77 E-value=35 Score=35.02 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=22.3
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
..+++|||+|.+|...+..+ .|..| ++.+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 36899999999998888542 36666 77654
No 332
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=37.76 E-value=39 Score=30.08 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=22.5
Q ss_pred cccEEEEccChhHHHHHHh-c-CCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg 78 (308)
..+++|||+|.+|.-=+.. . .|.+| +|...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3589999999999877754 2 56666 78764
No 333
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=37.72 E-value=32 Score=33.85 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=22.8
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKR 77 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~R 77 (308)
...++.|||.|.||..++.++ .|..| ...+
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp 147 (381)
T PRK00257 115 AERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDP 147 (381)
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 347899999999999999764 46666 4443
No 334
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=37.67 E-value=24 Score=32.46 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=16.5
Q ss_pred ccEEEEcc-ChhHHHHHHh
Q 021746 50 APAAIVGG-GRVGTALKEM 67 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~ 67 (308)
|||+|+|+ |.+|..+...
T Consensus 2 mkV~IiG~~G~mG~~i~~~ 20 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEA 20 (257)
T ss_pred cEEEEECCCCHHHHHHHHH
Confidence 89999998 9999999965
No 335
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=37.66 E-value=37 Score=30.68 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=23.4
Q ss_pred ccccEEEEccChhHHHHHHhc--CC----CcEEecCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KG----QDLLVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g----~~v~v~Rg 78 (308)
+.++++|+|+|+.|...+... .| +.+++.|.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 458999999999999999642 23 33388886
No 336
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=37.58 E-value=34 Score=36.62 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=25.0
Q ss_pred ccccEEEEccChhHHHHHHh--cCCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM--GKGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~ 79 (308)
.+.+|+|||+|-+|+-++.. .+|.+| ++.+.+
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 45689999999999999964 357777 777644
No 337
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=37.53 E-value=37 Score=30.02 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=21.6
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|.|+|+|++|+..+.. |-|+-+++-..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3789999999999999964 33333455554
No 338
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=37.45 E-value=40 Score=26.23 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=19.6
Q ss_pred EEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 52 AAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 52 i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
|+|+|.|.+|..++..+ .+.+| +|.+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 68999999999999653 33344 676653
No 339
>PLN02686 cinnamoyl-CoA reductase
Probab=37.44 E-value=59 Score=31.26 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=25.6
Q ss_pred cccccccEEEEcc-ChhHHHHHHhc--CCCcE-EecCC
Q 021746 45 TTTQVAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 45 ~~~~~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
...+.++|.|.|+ |-||..++..+ .|++| .+.|.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3445688999997 89999999643 57777 55675
No 340
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=37.41 E-value=35 Score=34.21 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=22.2
Q ss_pred cEEEEccChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 51 PAAIVGGGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
+|+|||+|-+|+-.|-. . .|..| ++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 68999999999999943 2 47777 777543
No 341
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=37.40 E-value=42 Score=32.99 Aligned_cols=31 Identities=10% Similarity=0.319 Sum_probs=23.0
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--C-CCcE-EecCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--K-GQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~-g~~v-~v~Rg 78 (308)
..|||+|+|+ |.+|.-+-+++ + ...+ +++|.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~ 72 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD 72 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh
Confidence 4489999999 89999999875 3 2344 66663
No 342
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=37.26 E-value=33 Score=32.36 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=22.9
Q ss_pred ccEEEEcc-ChhHHHHHHhc--C-CCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--K-GQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~-g~~v-~v~Rg~ 79 (308)
|+|.|.|+ |-||+.++..+ . |+.| .+.|..
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~ 36 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQT 36 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcH
Confidence 78999998 99999999642 3 5666 666753
No 343
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=37.24 E-value=16 Score=29.33 Aligned_cols=18 Identities=44% Similarity=0.553 Sum_probs=16.3
Q ss_pred cEEEEc-cChhHHHHHHhc
Q 021746 51 PAAIVG-GGRVGTALKEMG 68 (308)
Q Consensus 51 ~i~IiG-~G~vG~~~a~~~ 68 (308)
||.||| .|.+|+.+.+++
T Consensus 1 rV~IvGAtG~vG~~l~~lL 19 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLL 19 (121)
T ss_dssp EEEEESTTSHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHH
Confidence 689999 999999999875
No 344
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=37.23 E-value=36 Score=35.65 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=24.6
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
..+++|||+|..|...|..+ .|+.| ++-|...
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 36899999999999988542 46776 7777754
No 345
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=37.11 E-value=26 Score=30.99 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=21.9
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|.|||+|++|+..+.. |-|.-+++-..
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3789999999999999953 33333466555
No 346
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=37.00 E-value=36 Score=31.58 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=21.8
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcEEecCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDLLVKRG 78 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v~v~Rg 78 (308)
|+|.|.|+ |-||+.+...+ .|+++.+.|.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g~V~~~~~~ 32 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGNLIALDVH 32 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccCCEEEeccc
Confidence 78999997 99999999653 4644456664
No 347
>PRK07774 short chain dehydrogenase; Provisional
Probab=36.97 E-value=37 Score=29.92 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=23.7
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|.|+ |.||..++... .|+.| ++.|.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899998 99999999642 56666 777764
No 348
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=36.90 E-value=34 Score=33.59 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=21.6
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|||+|++|+..+.. |-|+-++|-..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 4689999999999998853 33443456553
No 349
>PRK07326 short chain dehydrogenase; Provisional
Probab=36.87 E-value=36 Score=29.72 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=22.5
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+.++|+|+ |.||..++... +|..| ++.|+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 57899986 89999999643 46666 777753
No 350
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=36.77 E-value=37 Score=33.78 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=24.1
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
.+++|||+|.+|.=+|... .|.+| +|.|+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 5899999999998888542 35565 8888765
No 351
>PRK08223 hypothetical protein; Validated
Probab=36.74 E-value=36 Score=32.27 Aligned_cols=30 Identities=27% Similarity=0.226 Sum_probs=21.3
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|||+|++|+..+-+ |-|+-+++-..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3689999999999988743 44443455554
No 352
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=36.72 E-value=41 Score=29.88 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=22.8
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..+++|.|+ |.||..++... .|..| ++.|.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 457899986 89999999642 46666 677763
No 353
>PRK07060 short chain dehydrogenase; Provisional
Probab=36.65 E-value=46 Score=29.17 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=23.7
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|.|+ |.||..++... .|+.| ++.|..
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~ 43 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNA 43 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 368899998 79999999642 47776 777763
No 354
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=36.63 E-value=48 Score=31.49 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=23.8
Q ss_pred cEEEEccChhHHHHHHhc-----CCCcE-EecCCCCCC
Q 021746 51 PAAIVGGGRVGTALKEMG-----KGQDL-LVKRGELVP 82 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~-----~g~~v-~v~Rg~~~~ 82 (308)
+|+|||+|.-|..++... .+.++ +|.|....+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~ 38 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP 38 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc
Confidence 589999999998888532 24555 999887653
No 355
>PRK05875 short chain dehydrogenase; Provisional
Probab=36.55 E-value=41 Score=30.28 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=23.9
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|.|+ |.||..++... .|..| ++.|..
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~ 41 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP 41 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 378899997 89999999643 47776 778763
No 356
>PRK05442 malate dehydrogenase; Provisional
Probab=36.42 E-value=26 Score=33.65 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=16.0
Q ss_pred cccEEEEcc-ChhHHHHHH
Q 021746 49 VAPAAIVGG-GRVGTALKE 66 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~ 66 (308)
-+||.|||+ |.||.-++-
T Consensus 4 ~~KV~IiGaaG~VG~~~a~ 22 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLF 22 (326)
T ss_pred CcEEEEECCCcHHHHHHHH
Confidence 479999998 999999984
No 357
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=36.30 E-value=33 Score=32.14 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=22.2
Q ss_pred EEEEccChhHHHHHHhc--CCC-cE-EecCCCCC
Q 021746 52 AAIVGGGRVGTALKEMG--KGQ-DL-LVKRGELV 81 (308)
Q Consensus 52 i~IiG~G~vG~~~a~~~--~g~-~v-~v~Rg~~~ 81 (308)
|+|||+|.||..++... .|. .+ ++.+.+..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~ 34 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGL 34 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcH
Confidence 58999999999999532 232 55 89887653
No 358
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=36.12 E-value=38 Score=32.82 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=24.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.=+|... .|..| +|.|++.+
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATV 179 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 5799999999999888542 35566 89887654
No 359
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=35.96 E-value=38 Score=33.54 Aligned_cols=32 Identities=25% Similarity=0.613 Sum_probs=24.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|.+| ++.|++.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 6899999999999888542 35566 88887653
No 360
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=35.91 E-value=41 Score=33.08 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=23.9
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..++|||+|.-|...|... .|+.| +|-|+.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 6799999999998888543 47777 888874
No 361
>PRK07577 short chain dehydrogenase; Provisional
Probab=35.86 E-value=44 Score=29.08 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=22.8
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
++++|.|+ |.||..++... .|+.| .+.|..
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~ 37 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIARSA 37 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57888887 78999999653 46666 778864
No 362
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=35.82 E-value=40 Score=33.31 Aligned_cols=32 Identities=28% Similarity=0.588 Sum_probs=24.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
-+++|||+|.+|.-+|... .|..| ++.|+..+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 5899999999999998542 35555 88888654
No 363
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=35.77 E-value=43 Score=32.19 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=44.8
Q ss_pred CCCCccCCCcccchhh-cccccccccccEEEEccChhHHHHHHh----cCCCcEEecCCC-CCC-C-C-CCCcEEEEecC
Q 021746 25 FSKPRFAKPTPVSAFA-MASFTTTQVAPAAIVGGGRVGTALKEM----GKGQDLLVKRGE-LVP-L-D-FEGPIFVCTRN 95 (308)
Q Consensus 25 ~~~~~~~~~~~~~~~~-~~~~~~~~~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg~-~~~-~-~-~~~~IlvatK~ 95 (308)
+..--+..|.+....+ +.........+++|+|+|.||.+.... |+...+.+.+.+ ++. . . ....+++-.+.
T Consensus 144 ~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~ 223 (350)
T COG1063 144 EEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE 223 (350)
T ss_pred hhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc
Confidence 3334455555555323 222211122279999999999997543 332223454432 111 0 1 11223333333
Q ss_pred ccHHHHHHhCCCCCCCeEEEEecCC
Q 021746 96 DDLEAVLEAAPRSRWNDLVFFQNGM 120 (308)
Q Consensus 96 ~dl~~~l~~l~~~~~t~IV~LQNGl 120 (308)
++....+..+.....-++++---|.
T Consensus 224 ~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 224 DDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred ccHHHHHHHHhCCCCCCEEEECCCC
Confidence 3444444333333344666666663
No 364
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=35.61 E-value=44 Score=32.98 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=23.9
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
-.++|||+|.-|...|..+ .|.+| +|-|+..
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~ 39 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN 39 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 4689999999998888543 47777 8888644
No 365
>PRK07233 hypothetical protein; Provisional
Probab=35.52 E-value=42 Score=32.30 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=21.1
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
+++|||+|--|..-|..+ .|++| ++-+...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~ 33 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ 33 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence 589999997777666443 47777 6666544
No 366
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=35.50 E-value=39 Score=31.94 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=23.2
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
|+|+|.|+ |-||..++..+ .|++| .+.|..
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 38 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDP 38 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCC
Confidence 78999997 88999999643 57777 566654
No 367
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.49 E-value=42 Score=29.48 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=23.4
Q ss_pred cccEEEEcc-ChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
.++++|+|+ |.||..++.. . .|+.| ++.|+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899997 7899999954 2 56666 778874
No 368
>PRK12839 hypothetical protein; Provisional
Probab=35.30 E-value=50 Score=34.14 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=25.2
Q ss_pred ccccccccccEEEEccChhHHHHHHh--cCCCcE-EecCCC
Q 021746 42 ASFTTTQVAPAAIVGGGRVGTALKEM--GKGQDL-LVKRGE 79 (308)
Q Consensus 42 ~~~~~~~~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~ 79 (308)
|+|..+....++|||+|..|...|-. ..|..| +|-++.
T Consensus 1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~ 41 (572)
T PRK12839 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAS 41 (572)
T ss_pred CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 44444456789999999888776632 245566 776654
No 369
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=35.29 E-value=29 Score=33.67 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=17.0
Q ss_pred cccEEEEccChhHHHHHHh
Q 021746 49 VAPAAIVGGGRVGTALKEM 67 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~ 67 (308)
.+||+|+|.|+||...++-
T Consensus 5 ~lrVaI~G~GrIGr~~~r~ 23 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARV 23 (338)
T ss_pred ceEEEEEeecHHHHHHHHH
Confidence 4899999999999998864
No 370
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=35.16 E-value=40 Score=33.82 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=24.1
Q ss_pred ccEEEEccChhHHHHHHhc--CC--CcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KG--QDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g--~~v-~v~Rg~~ 80 (308)
..++|||+|-||..+|..+ ++ ..| ++-|...
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~ 39 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDG 39 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 5789999999999999754 44 456 8888553
No 371
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=34.94 E-value=39 Score=32.77 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=23.1
Q ss_pred ccccEEEEccChhHHHHHHhc--CC-CcE-EecCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KG-QDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g-~~v-~v~Rg 78 (308)
+..++.|||+|.+|.+.+..+ +| .++ +..|.
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 457999999999999999753 34 334 66665
No 372
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.90 E-value=44 Score=32.91 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=24.1
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..+++|+|+|.+|...+... .|.+| ++.+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899999999999888542 57777 777753
No 373
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=34.86 E-value=45 Score=30.93 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=23.4
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|.|+ |.||..++..+ .|++| ++.|..
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 478899996 89999999643 57777 556654
No 374
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=34.79 E-value=29 Score=34.65 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=20.8
Q ss_pred ccEEEEccChhHHHHHHhcC-CCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKEMGK-GQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~~-g~~v-~v~Rg 78 (308)
+||.|.|-|+||..+.+... ..++ +|+=+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN 116 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN 116 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence 59999999999999997532 1234 56533
No 375
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=34.71 E-value=41 Score=33.25 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=24.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.=+|... .|.+| +|.|+.++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 6899999999998888542 35666 89887654
No 376
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=34.70 E-value=40 Score=33.63 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=24.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|..| +|.|+..+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 6899999999998888542 35566 89887653
No 377
>PLN02785 Protein HOTHEAD
Probab=34.46 E-value=57 Score=33.93 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=22.9
Q ss_pred ccEEEEccChhHHHHHHhc-CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~-~g~~v-~v~Rg~ 79 (308)
-.++|||+|.-|+.+|.++ .+..| ++-||.
T Consensus 56 yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~ 87 (587)
T PLN02785 56 YDYIVVGGGTAGCPLAATLSQNFSVLLLERGG 87 (587)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCcEEEEecCC
Confidence 5789999999999999764 23345 777774
No 378
>PRK05993 short chain dehydrogenase; Provisional
Probab=34.37 E-value=42 Score=30.52 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=22.8
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+.++|.|+ |.||..++... .|..| ++.|+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~ 38 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKE 38 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35788898 89999999653 47776 777764
No 379
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.05 E-value=50 Score=28.69 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=21.6
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
++++|+|+ |.||..++... .|+.+ ++.|.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 67999986 89999999643 57776 44554
No 380
>PRK13748 putative mercuric reductase; Provisional
Probab=34.01 E-value=42 Score=34.11 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=24.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|.+| +|.|+..+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l 305 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLF 305 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc
Confidence 5899999999999999642 35666 88886544
No 381
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=34.00 E-value=44 Score=32.87 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=25.2
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-++... .|.+| +|.|+..+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5899999999999888642 45666 99887654
No 382
>PRK08219 short chain dehydrogenase; Provisional
Probab=33.98 E-value=44 Score=28.82 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=20.6
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
|+++|.|+ |.+|..++... . ++| .+.|.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~ 35 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-HTLLLGGRP 35 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCC
Confidence 57888886 78999999642 4 555 77775
No 383
>PRK06924 short chain dehydrogenase; Provisional
Probab=33.96 E-value=47 Score=29.34 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=21.6
Q ss_pred cEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 51 PAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+++|.|+ |.||..++..+ .|..| ++.|..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE 35 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc
Confidence 4788885 89999999643 46666 778864
No 384
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=33.91 E-value=91 Score=30.01 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=38.3
Q ss_pred ccccEEEEccChhHHHHHHh--cCCCcE-EecCCCCC-----------CCC------CCCcEEEEecCc-cHHHHH
Q 021746 48 QVAPAAIVGGGRVGTALKEM--GKGQDL-LVKRGELV-----------PLD------FEGPIFVCTRND-DLEAVL 102 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~~~-----------~~~------~~~~IlvatK~~-dl~~~l 102 (308)
..++|..||.|-+|.-.+.. .+|+.| +..|.... -.. ..+.||.++.+. +..+++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~ 109 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVL 109 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHh
Confidence 35899999999999999974 368876 77775432 111 135678888774 666665
No 385
>PRK06196 oxidoreductase; Provisional
Probab=33.89 E-value=51 Score=30.68 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=23.7
Q ss_pred ccccEEEEcc-ChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
....++|.|+ |.||..++.. . .|+.| ++.|+.
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~ 60 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP 60 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3457899998 7899999964 2 46666 778864
No 386
>PRK05717 oxidoreductase; Validated
Probab=33.82 E-value=50 Score=29.38 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=22.3
Q ss_pred ccccEEEEcc-ChhHHHHHHh-c-CCCcE-EecCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEM-G-KGQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg 78 (308)
+..+++|.|+ |.||..+++. . .|..| ++.|.
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~ 43 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD 43 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence 3356889986 7999999964 3 56666 66565
No 387
>PRK06057 short chain dehydrogenase; Provisional
Probab=33.79 E-value=44 Score=29.77 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=23.2
Q ss_pred ccEEEEcc-ChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
.+++|+|+ |.||..++.. . +|+.| ++.|+.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999 8999999954 3 57776 677763
No 388
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=33.78 E-value=1.2e+02 Score=29.78 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=21.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
+.|.|||.|.+|..++--+ -|.++ ++.-++.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 5789999999999998322 25676 5554443
No 389
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=33.72 E-value=43 Score=33.02 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=21.7
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKR 77 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~R 77 (308)
.++|||+|..|.+.|..+ .|..| +|-+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 579999999999988543 47777 8887
No 390
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.64 E-value=44 Score=34.17 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=24.1
Q ss_pred cccccccEEEEccChhHHHHHHhc--CCCcE--EecCC
Q 021746 45 TTTQVAPAAIVGGGRVGTALKEMG--KGQDL--LVKRG 78 (308)
Q Consensus 45 ~~~~~m~i~IiG~G~vG~~~a~~~--~g~~v--~v~Rg 78 (308)
.++..-+++|||+|--|..=|+.+ .|.+| |=+|+
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 334446899999999888888754 47776 44563
No 391
>PRK15076 alpha-galactosidase; Provisional
Probab=33.62 E-value=28 Score=34.79 Aligned_cols=30 Identities=10% Similarity=0.258 Sum_probs=20.0
Q ss_pred ccEEEEccChhHHHHH---Hh-----cCCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALK---EM-----GKGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a---~~-----~~g~~v-~v~Rg~ 79 (308)
|||+|||+|.+|...+ .+ .++..+ |+-+.+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~ 40 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP 40 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH
Confidence 7999999999983332 11 144344 888765
No 392
>PLN02206 UDP-glucuronate decarboxylase
Probab=33.60 E-value=41 Score=33.55 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=23.3
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--CCCcE-EecC
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--KGQDL-LVKR 77 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~R 77 (308)
+.|||.|.|+ |-||+.+...+ .|+.| .+.|
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 5699999996 99999999643 57777 4443
No 393
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=33.59 E-value=45 Score=30.09 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=18.5
Q ss_pred ccccEEEEccChhHHHHHHhc
Q 021746 48 QVAPAAIVGGGRVGTALKEMG 68 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~ 68 (308)
+.++++|.|.|.||+.++.++
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L 42 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKL 42 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHH
Confidence 458999999999999999864
No 394
>PLN00198 anthocyanidin reductase; Provisional
Probab=33.58 E-value=49 Score=30.97 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=23.7
Q ss_pred ccccEEEEc-cChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 48 QVAPAAIVG-GGRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG-~G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
..+++.|.| .|-||..++.. . .|+.| .+.|..
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCC
Confidence 457899999 67899999964 3 57776 566753
No 395
>PRK06940 short chain dehydrogenase; Provisional
Probab=33.56 E-value=47 Score=30.30 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=22.1
Q ss_pred cEEEEccChhHHHHHHh-cCCCcE-EecCCC
Q 021746 51 PAAIVGGGRVGTALKEM-GKGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~-~~g~~v-~v~Rg~ 79 (308)
.++|.|+|.||..++.. ..|..| ++.|+.
T Consensus 4 ~~lItGa~gIG~~la~~l~~G~~Vv~~~r~~ 34 (275)
T PRK06940 4 VVVVIGAGGIGQAIARRVGAGKKVLLADYNE 34 (275)
T ss_pred EEEEECCChHHHHHHHHHhCCCEEEEEeCCH
Confidence 46888999999999954 456666 777863
No 396
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=33.53 E-value=30 Score=33.09 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=20.9
Q ss_pred cEEEEcc-ChhHHHHHHh-c---CCCcE-EecCCC
Q 021746 51 PAAIVGG-GRVGTALKEM-G---KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~-G~vG~~~a~~-~---~g~~v-~v~Rg~ 79 (308)
||+|||+ |.||..++-. . ...++ ++-+.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999943 2 12234 777665
No 397
>PRK12829 short chain dehydrogenase; Provisional
Probab=33.48 E-value=43 Score=29.70 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=24.5
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+.+++.|.|+ |.||..++.++ +|+.| .+.|.+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~ 45 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE 45 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3478999997 79999999653 57776 888864
No 398
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=33.48 E-value=57 Score=32.06 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=25.0
Q ss_pred cccEEEEccChhHHHHHHhc-C-CCcE-EecCCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG-K-GQDL-LVKRGELV 81 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~-~-g~~v-~v~Rg~~~ 81 (308)
..+|+|||+|--|...+..+ . +.++ +|.+..++
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 36899999999998888543 2 4565 99887665
No 399
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=33.45 E-value=45 Score=34.46 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=25.5
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
+.++|||+|..|++.|..+ .|..| +|-|+...
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~ 35 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD 35 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 3579999999999999754 46676 88887654
No 400
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=33.45 E-value=49 Score=33.07 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=22.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
++++|||+|--|..-|.++ .|.+| ++-|...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5789999997777766553 57787 7777643
No 401
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=33.39 E-value=29 Score=34.83 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=14.2
Q ss_pred cEEEEccChhHHHHHH
Q 021746 51 PAAIVGGGRVGTALKE 66 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~ 66 (308)
++.|||+|++|+-++.
T Consensus 1 kVlvVGaGGlGcE~lK 16 (435)
T cd01490 1 KVFLVGAGAIGCELLK 16 (435)
T ss_pred CEEEECCCHHHHHHHH
Confidence 5899999999999874
No 402
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=33.29 E-value=44 Score=32.40 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=21.7
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|+|||+|++|+..+.. |-|+-++|-+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3689999999999998853 33443466664
No 403
>PRK06370 mercuric reductase; Validated
Probab=33.19 E-value=45 Score=33.11 Aligned_cols=32 Identities=28% Similarity=0.607 Sum_probs=25.0
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.=+|... .|.+| ++.|+..+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 6899999999999888542 35566 89987654
No 404
>PLN02427 UDP-apiose/xylose synthase
Probab=32.99 E-value=47 Score=31.94 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=23.1
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--C-CCcE-EecCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--K-GQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~-g~~v-~v~Rg 78 (308)
+.|+|.|.|+ |-||+.+.+.+ . |++| .+.|.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~ 48 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVY 48 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecC
Confidence 4489999996 99999999653 4 4666 55554
No 405
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=32.97 E-value=43 Score=34.41 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=24.6
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
-.++|||+|.=|+.+|..+ .|..| ++-+|.
T Consensus 8 ~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 8 YDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4789999999999999654 46666 888985
No 406
>PRK07825 short chain dehydrogenase; Provisional
Probab=32.75 E-value=54 Score=29.54 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=22.9
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.+.++|.|+ |.||..++... .|..| ++.|+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~ 39 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDE 39 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 367899987 78999999643 47776 667753
No 407
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=32.63 E-value=47 Score=33.20 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=25.0
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
-+++|||+|.+|.-+|... .|.+| +|.|++++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 5899999999999888542 35566 89887654
No 408
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.44 E-value=51 Score=33.26 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=24.4
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.++++|||+|==|..=|+++ +|..| ++-|....
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~ 38 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence 47899999997666666654 58888 88876543
No 409
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=32.43 E-value=51 Score=30.94 Aligned_cols=32 Identities=31% Similarity=0.335 Sum_probs=24.0
Q ss_pred ccccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+.+++.|.|+ |.||..++..+ .|.+| .+.|..
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~ 40 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRS 40 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccc
Confidence 3478999997 89999999643 57776 666653
No 410
>PRK07411 hypothetical protein; Validated
Probab=32.32 E-value=44 Score=32.90 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=21.4
Q ss_pred cccEEEEccChhHHHHHHh----cCCCcEEecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM----GKGQDLLVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~----~~g~~v~v~Rg 78 (308)
..+|.|||+|++|+..+.. |-|+-++|-.+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3689999999999998853 33443455553
No 411
>PRK14727 putative mercuric reductase; Provisional
Probab=32.19 E-value=50 Score=33.06 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=24.4
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|.+| +|.|+..+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l 223 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL 223 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC
Confidence 5899999999999998542 35566 88886443
No 412
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=32.19 E-value=39 Score=35.33 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=23.8
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..+++|+|.|++|...++++ .|.++ +|.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDP 433 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCH
Confidence 47899999999999999864 35555 665543
No 413
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=32.07 E-value=33 Score=31.83 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=25.0
Q ss_pred cHHHHHHHHHcCCCceeecChhhHHHHHHHHHHHHHhh
Q 021746 168 WASVVAERLSVGGLSCKVLDKEAFQKQMLEKLIWISAF 205 (308)
Q Consensus 168 ~a~~l~~~L~~aGI~~~v~~~~dI~~~~WeKlv~N~a~ 205 (308)
..+++.+.-++.|+++-+...-.+-..+..+++-.++-
T Consensus 106 ~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~ 143 (266)
T TIGR00036 106 DKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAK 143 (266)
T ss_pred HHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHH
Confidence 34667777777888876543336777777777766654
No 414
>PRK08264 short chain dehydrogenase; Validated
Probab=31.88 E-value=52 Score=28.79 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=22.8
Q ss_pred ccEEEEcc-ChhHHHHHHh-c-CCC-cE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEM-G-KGQ-DL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~-~-~g~-~v-~v~Rg~ 79 (308)
++++|+|+ |.||..++.. . +|+ .| .+.|..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 57899985 9999999964 2 566 55 788864
No 415
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=31.80 E-value=33 Score=32.91 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.7
Q ss_pred ccEEEEcc-ChhHHHHHH
Q 021746 50 APAAIVGG-GRVGTALKE 66 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~ 66 (308)
+||.|||+ |.||..++-
T Consensus 4 ~KV~IIGa~G~VG~~~a~ 21 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLF 21 (323)
T ss_pred eEEEEECCCcHHHHHHHH
Confidence 78999998 999999984
No 416
>PRK06182 short chain dehydrogenase; Validated
Probab=31.80 E-value=54 Score=29.56 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=23.0
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+.++|.|+ |.||..++... .|+.| .+.|+.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~ 37 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRV 37 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57889996 89999999643 57776 777864
No 417
>PRK08309 short chain dehydrogenase; Provisional
Probab=31.75 E-value=52 Score=28.55 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=20.5
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
|+++|+|+.++|+.++..+ .|..| +++|.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECC
Confidence 6789999887887777432 46666 56665
No 418
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.61 E-value=31 Score=33.05 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=22.6
Q ss_pred ccEEEEcc-ChhHHHHHH-h---c-CC-----CcEEecCCCCC
Q 021746 50 APAAIVGG-GRVGTALKE-M---G-KG-----QDLLVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~-~---~-~g-----~~v~v~Rg~~~ 81 (308)
+||.|||+ |.||.-++- + + .+ .-+|+-+.+..
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~ 45 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQAL 45 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcc
Confidence 68999999 999999984 2 1 23 23478775443
No 419
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=31.60 E-value=40 Score=34.22 Aligned_cols=30 Identities=30% Similarity=0.318 Sum_probs=21.7
Q ss_pred cccEEEEccChhHHHHHH-hc-CCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKE-MG-KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~-~~-~g~~v-~v~Rg 78 (308)
.++|+|||.|++|..-|- |. .|.+| +-.|.
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~ 68 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRK 68 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccc
Confidence 489999999999997774 32 47776 34443
No 420
>PRK12939 short chain dehydrogenase; Provisional
Probab=31.59 E-value=49 Score=28.99 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=23.0
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|.|+ |.||..++... .|+.+ ++.|++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~ 41 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA 41 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 367899997 89999999643 46766 666653
No 421
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=31.56 E-value=47 Score=30.80 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=21.4
Q ss_pred ccEEEEccChhHHHHHHh-c-CC-CcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KG-QDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g-~~v-~v~Rg 78 (308)
.+++|+|+|++|..++.. . .| ..+ ++.|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 578999999999999953 2 34 344 66665
No 422
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=31.55 E-value=51 Score=32.51 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=24.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|.+| ++.|++.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 6899999999999888542 35565 89887653
No 423
>PRK12827 short chain dehydrogenase; Provisional
Probab=31.49 E-value=51 Score=28.79 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=22.2
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
.|+++|.|+ |.||..++... +|+.+ ++.|.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~ 39 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGADVIVLDIH 39 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCc
Confidence 378899985 79999999653 57776 66553
No 424
>PRK07102 short chain dehydrogenase; Provisional
Probab=31.42 E-value=48 Score=29.21 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=22.6
Q ss_pred ccEEEEcc-ChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
|+++|.|+ |.||..++.. . .|+.| ++.|+.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46888884 8999999954 3 57776 777864
No 425
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=31.40 E-value=30 Score=33.53 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.5
Q ss_pred ccEEEEccChhHHHHHHhc
Q 021746 50 APAAIVGGGRVGTALKEMG 68 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~ 68 (308)
.=++|||+|+||+.-+.|+
T Consensus 75 syVVVVG~GgVGSwv~nmL 93 (430)
T KOG2018|consen 75 SYVVVVGAGGVGSWVANML 93 (430)
T ss_pred cEEEEEecCchhHHHHHHH
Confidence 4579999999999999874
No 426
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=31.36 E-value=52 Score=32.84 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=24.4
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.=+|... .|.+| +|.|+.++
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 6899999999998888542 35566 88887654
No 427
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=31.33 E-value=48 Score=32.30 Aligned_cols=30 Identities=30% Similarity=0.550 Sum_probs=22.6
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
..+++|+|+|.+|...++.. .|..| .+.|.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 35799999999999999653 35556 67665
No 428
>PRK12367 short chain dehydrogenase; Provisional
Probab=31.32 E-value=48 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=22.6
Q ss_pred cccEEEEcc-ChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
...++|.|+ |.||..++.. . .|..| ++.|..
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 356788887 6899999954 3 57776 677764
No 429
>PRK12828 short chain dehydrogenase; Provisional
Probab=31.24 E-value=53 Score=28.43 Aligned_cols=30 Identities=37% Similarity=0.606 Sum_probs=23.0
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.+++|.|+ |.||..++... .|..| ++.|+.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence 57899987 89999999653 46666 888864
No 430
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=31.23 E-value=1.9e+02 Score=26.58 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=58.4
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcEEe--cCCCCCCC-CCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCCC--h
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDLLV--KRGELVPL-DFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMI--E 122 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v~v--~Rg~~~~~-~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl~--~ 122 (308)
.+.+|+|+|-++..++++. -|.+|.| .|.+..+. ..++.- .......++.++.+. .++.+|.+-.+-. .
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~t~vvi~th~h~~D~ 176 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVA--TLVTDEPEAEVAEAP--PGSYFLVLTHDHALDL 176 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCce--EEecCCHHHHHhcCC--CCcEEEEEeCChHHHH
Confidence 6889999999999999875 3677734 45543432 222211 112233455555443 3566665555543 3
Q ss_pred hHHhhcCCCCCceeEEEEEeeccCCCCCCCceecCCCCCcccccccHHHHHHHHHcCCCc
Q 021746 123 PWLESKGLKDANQVLAYFAVSKLGERPIDGKTDTNPEGLTAAYGKWASVVAERLSVGGLS 182 (308)
Q Consensus 123 ~~l~~~~~~~~~~v~~~~~~~~~G~~~~dg~i~~~g~g~~~~~G~~a~~l~~~L~~aGI~ 182 (308)
+.+... +... -..|++ -+|.++ +.+.+.+.|.+.|++
T Consensus 177 ~~L~~a-L~~~--~~~YIG--~lGSr~------------------k~~~~~~~L~~~G~~ 213 (246)
T TIGR02964 177 ELCHAA-LRRG--DFAYFG--LIGSKT------------------KRARFEHRLRARGVD 213 (246)
T ss_pred HHHHHH-HhCC--CCcEEE--EeCCHH------------------HHHHHHHHHHhcCCC
Confidence 444322 1000 113666 366631 346788888888875
No 431
>PLN00106 malate dehydrogenase
Probab=31.21 E-value=33 Score=32.93 Aligned_cols=65 Identities=26% Similarity=0.355 Sum_probs=39.0
Q ss_pred ccEEEEcc-ChhHHHHHHhc----CCCcE-EecCCCCCCC---C---CCCc-EEEE-ecCccHHHHHHhCCCCCCCeEEE
Q 021746 50 APAAIVGG-GRVGTALKEMG----KGQDL-LVKRGELVPL---D---FEGP-IFVC-TRNDDLEAVLEAAPRSRWNDLVF 115 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~----~g~~v-~v~Rg~~~~~---~---~~~~-Ilva-tK~~dl~~~l~~l~~~~~t~IV~ 115 (308)
.||+|||+ |.||..++-.+ ....+ ++.+.+ ... | .... .+.. +..+|+.+++ . ..++|.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l---~---~aDiVV 91 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAADVSHINTPAQVRGFLGDDQLGDAL---K---GADLVI 91 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEchhhhCCcCceEEEEeCCCCHHHHc---C---CCCEEE
Confidence 68999999 99999999532 22234 887766 221 2 1112 2222 4555666665 2 247777
Q ss_pred EecCCC
Q 021746 116 FQNGMI 121 (308)
Q Consensus 116 LQNGl~ 121 (308)
+.=|..
T Consensus 92 itAG~~ 97 (323)
T PLN00106 92 IPAGVP 97 (323)
T ss_pred EeCCCC
Confidence 777763
No 432
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=31.17 E-value=54 Score=28.89 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=22.8
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.+++|.|+ |.||..++... .|..| ++.|..
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 56899997 79999999653 56666 777764
No 433
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=31.04 E-value=52 Score=32.81 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=24.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
-+++|||+|.+|.=+|... .|.+| +|.|+.++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~ 212 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC
Confidence 4789999999999888542 35666 89887654
No 434
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=30.99 E-value=72 Score=30.93 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=24.0
Q ss_pred ccEEEEccChhHHHHHHhc--CCC--cE-EecCCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQ--DL-LVKRGELVP 82 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~--~v-~v~Rg~~~~ 82 (308)
.+|+|||+|.-|...+..+ .|+ ++ +|.+..+.|
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~ 41 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP 41 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence 5899999999998888432 233 34 888886654
No 435
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.99 E-value=64 Score=25.94 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=42.3
Q ss_pred cEEEEc----cChhHHHHHHhc--CCCcE-EecCCCC-------CC--CCC---CCcEEEEecCccHHHHHHhCCCCCCC
Q 021746 51 PAAIVG----GGRVGTALKEMG--KGQDL-LVKRGEL-------VP--LDF---EGPIFVCTRNDDLEAVLEAAPRSRWN 111 (308)
Q Consensus 51 ~i~IiG----~G~vG~~~a~~~--~g~~v-~v~Rg~~-------~~--~~~---~~~IlvatK~~dl~~~l~~l~~~~~t 111 (308)
+|+||| .+..|..+.+.. +|.++ +|..... ++ .|. .+.++|+++...+.++++++... +.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~-g~ 80 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL-GV 80 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH-T-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc-CC
Confidence 589999 567777666532 56555 7765432 11 111 25689999999999999888764 34
Q ss_pred eEEEEecCCCh
Q 021746 112 DLVFFQNGMIE 122 (308)
Q Consensus 112 ~IV~LQNGl~~ 122 (308)
.-+.+|-|-.+
T Consensus 81 ~~v~~~~g~~~ 91 (116)
T PF13380_consen 81 KAVWLQPGAES 91 (116)
T ss_dssp SEEEE-TTS--
T ss_pred CEEEEEcchHH
Confidence 56667888653
No 436
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=30.93 E-value=50 Score=34.96 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=24.6
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.=||... .|.+| +|.|+.++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4789999999999888542 35566 89887653
No 437
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=30.79 E-value=66 Score=30.88 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=23.3
Q ss_pred ccEEEEccChhHHHHHHhc----CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG----KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~----~g~~v-~v~Rg~~~ 81 (308)
++++|||+|.-|...+... .+.++ +|.|....
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~ 39 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD 39 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence 4899999999998888532 22344 89887654
No 438
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=30.79 E-value=39 Score=35.94 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=24.8
Q ss_pred ccccEEEEccChhHHHHHHh---cCCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM---GKGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~---~~g~~v-~v~Rg~ 79 (308)
.+.+|+|||+|-+|.-+|.. .+|.+| ++.+..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 45789999999999999954 247877 777643
No 439
>PRK06116 glutathione reductase; Validated
Probab=30.74 E-value=53 Score=32.43 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=24.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.=++... .|.+| ++.|+..+
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 5899999999999888643 35666 88887653
No 440
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=30.70 E-value=61 Score=32.25 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=23.9
Q ss_pred cccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~ 80 (308)
.+.++|||+|+-|..=|.. + +|+-| ++-++..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k 37 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK 37 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc
Confidence 3678999999998776643 2 57777 8888664
No 441
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=30.67 E-value=54 Score=29.75 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=22.4
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcEE-ecC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDLL-VKR 77 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v~-v~R 77 (308)
..++++|.|.|.||..++.++ .|..++ |..
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D 62 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSD 62 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 458999999999999999764 354442 444
No 442
>PRK07806 short chain dehydrogenase; Provisional
Probab=30.62 E-value=54 Score=28.85 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=23.0
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
+++.|.|+ |.||..++... .|+.| ++.|+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899997 89999999642 57776 667864
No 443
>PRK06701 short chain dehydrogenase; Provisional
Probab=30.62 E-value=72 Score=29.40 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=23.1
Q ss_pred cccEEEEcc-ChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
.++++|.|+ |.||..++.. . .|..| ++.|.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899986 7899999954 3 46666 777764
No 444
>PRK07454 short chain dehydrogenase; Provisional
Probab=30.53 E-value=59 Score=28.54 Aligned_cols=30 Identities=37% Similarity=0.497 Sum_probs=22.1
Q ss_pred ccEEEEcc-ChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
.++.|.|+ |.||..++.. . +|..| ++.|+.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35788886 8999999964 3 56676 777764
No 445
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=30.50 E-value=50 Score=31.90 Aligned_cols=28 Identities=29% Similarity=0.679 Sum_probs=19.2
Q ss_pred EEEEccChhHHHHHHhc--CCC--cE-EecCCC
Q 021746 52 AAIVGGGRVGTALKEMG--KGQ--DL-LVKRGE 79 (308)
Q Consensus 52 i~IiG~G~vG~~~a~~~--~g~--~v-~v~Rg~ 79 (308)
|+|+|+|.+|...++.+ ++. .+ +..|+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~ 33 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP 33 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH
Confidence 68999999999999753 332 34 788854
No 446
>PLN02214 cinnamoyl-CoA reductase
Probab=30.45 E-value=55 Score=31.03 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=23.9
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.|++.|.|+ |-||..++..+ .|++| .+.|..
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 44 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNP 44 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCc
Confidence 367999998 99999999643 57777 666754
No 447
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=30.44 E-value=54 Score=32.01 Aligned_cols=32 Identities=31% Similarity=0.693 Sum_probs=24.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.-+|... .|.+| +|.|+..+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 5899999999999888542 35566 88887754
No 448
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=30.43 E-value=48 Score=33.92 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=22.9
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKR 77 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~R 77 (308)
.+++.|||.|.||..+++++ .|..| .+.|
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 47899999999999999764 36666 5555
No 449
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=30.11 E-value=57 Score=32.43 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=22.7
Q ss_pred ccEEEEccChhHHHHHH-hc-C--CCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKE-MG-K--GQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~-~--g~~v-~v~Rg~ 79 (308)
..|+|||+|-+|...|- +. . |.+| ++-++.
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 47899999999998884 32 2 6666 887754
No 450
>PLN02306 hydroxypyruvate reductase
Probab=30.07 E-value=37 Score=33.47 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=22.5
Q ss_pred cccEEEEccChhHHHHHHhc---CCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG---KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~---~g~~v-~v~Rg 78 (308)
..++.|||.|.||..+|+++ -|-.| .+.|.
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~ 198 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCC
Confidence 47889999999999999763 25556 45543
No 451
>PRK07109 short chain dehydrogenase; Provisional
Probab=30.02 E-value=66 Score=30.49 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=22.7
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..++|.|+ |.||..++... .|..| ++.|++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~ 42 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGE 42 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 56888887 79999999642 46666 788864
No 452
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=29.95 E-value=51 Score=35.08 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=24.6
Q ss_pred cccEEEEccChhHHHHHHh-c--CCCcE-EecCCC
Q 021746 49 VAPAAIVGGGRVGTALKEM-G--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~-~--~g~~v-~v~Rg~ 79 (308)
+.+|+|||+|-+|.-||.. . +|.+| ++.+.+
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4689999999999999964 2 58887 777654
No 453
>PHA03357 Alkaline exonuclease; Provisional
Probab=29.89 E-value=34 Score=25.79 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCccCCCcccc
Q 021746 18 PPLKKPTFSKPRFAKPTPVS 37 (308)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~ 37 (308)
-+-.+|+|.||+|.+|.+-+
T Consensus 48 e~~~~~~~~~~~~~~~~~k~ 67 (81)
T PHA03357 48 EAADKPDFPKPNFIDPKNKK 67 (81)
T ss_pred ccccCcCCCCCcccCCCccc
Confidence 35578999999999887643
No 454
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.73 E-value=63 Score=32.32 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=23.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
..++|||+|.-|-..|... .|..| +|-|++.
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~ 38 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYST 38 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 5789999999888877543 47777 8988643
No 455
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=29.69 E-value=1.3e+02 Score=25.01 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=34.2
Q ss_pred EEEEccChhHHHHHHhc--CCCcE-Ee-cCCCCCCCCCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCCC-hhHHh
Q 021746 52 AAIVGGGRVGTALKEMG--KGQDL-LV-KRGELVPLDFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGMI-EPWLE 126 (308)
Q Consensus 52 i~IiG~G~vG~~~a~~~--~g~~v-~v-~Rg~~~~~~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl~-~~~l~ 126 (308)
.+|+|+|.++..+++++ -|..| ++ .|.+.+|. ... +. ..+.++..+.+.-..++.||...+.-. .+.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~~~-~~~--~~---~~~~~~~~~~~~~~~~t~Vv~th~h~~D~~~L~ 74 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERFPE-ADE--VI---CIPPDDILEDLEIDPNTAVVMTHDHELDAEALE 74 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-TT-SSE--EE---CSHHHHHHHHC-S-TT-EEE--S-CCCHHHHHH
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccccCC-CCc--cE---ecChHHHHhccCCCCCeEEEEcCCchhHHHHHH
Confidence 37999999999999874 35555 44 34444542 111 22 344455555555555677665555544 44443
No 456
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.65 E-value=59 Score=31.93 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=21.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
.+|+|||.|.+|.-+|... .|..| ...+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~ 35 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKS 35 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5899999999999988653 46555 45553
No 457
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=29.64 E-value=37 Score=32.53 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=21.3
Q ss_pred cEEEEcc-ChhHHHHHHhc-----CC--C--cE-EecCCCC
Q 021746 51 PAAIVGG-GRVGTALKEMG-----KG--Q--DL-LVKRGEL 80 (308)
Q Consensus 51 ~i~IiG~-G~vG~~~a~~~-----~g--~--~v-~v~Rg~~ 80 (308)
||+|||+ |.||..++-.. .+ . .+ |+.+.+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc
Confidence 6899999 99999999531 22 1 24 8887554
No 458
>PRK06949 short chain dehydrogenase; Provisional
Probab=29.59 E-value=68 Score=28.33 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=23.0
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|.|+ |.||..++... .|..| ++.|+.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~ 43 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV 43 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478899997 89999999653 46655 667753
No 459
>PTZ00188 adrenodoxin reductase; Provisional
Probab=29.52 E-value=68 Score=32.89 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=23.8
Q ss_pred ccEEEEccChhHHHHHH-hc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKE-MG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~-~~--~g~~v-~v~Rg~ 79 (308)
.+|+|||+|.-|.|-|. +. .|+.| ++-|..
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 68999999999999986 33 36776 788754
No 460
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=29.51 E-value=39 Score=26.01 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=14.3
Q ss_pred ccEEEEccChhHHHHH
Q 021746 50 APAAIVGGGRVGTALK 65 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a 65 (308)
-+++|+|+|.+|..+.
T Consensus 4 ~~v~ivGag~~G~a~~ 19 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALL 19 (96)
T ss_dssp EEEEEETTTSHHHHHH
T ss_pred CeEEEECCCCcHHHHH
Confidence 5789999999999887
No 461
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=29.40 E-value=56 Score=30.90 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=25.5
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
-+++|+|+|.+|...+... .|++| ++-+..++
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL 171 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence 5789999999999999653 57776 88887554
No 462
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=29.31 E-value=50 Score=33.37 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=24.2
Q ss_pred ccEEEEccChhHHHHHHh----c-CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEM----G-KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~----~-~g~~v-~v~Rg~~~ 81 (308)
-+++|||+|.+|.=||.+ . .|.+| +|.|+..+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 578999999999888842 1 25666 99998763
No 463
>PRK13984 putative oxidoreductase; Provisional
Probab=29.20 E-value=67 Score=33.17 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=24.4
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
..+++|||+|..|...+..+ .|++| ++.|.+.
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 46899999999888888543 47777 7777654
No 464
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=29.08 E-value=63 Score=31.80 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=23.5
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
-.++|||+|.-|...|..+ +|.+| +|-|+.
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 4689999999999888543 46776 899864
No 465
>PTZ00058 glutathione reductase; Provisional
Probab=29.02 E-value=53 Score=34.01 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=25.0
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
..+++|||+|.+|.=+|... .|.+| ++.|+.++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 36899999999999888542 35566 88887653
No 466
>PRK14694 putative mercuric reductase; Provisional
Probab=28.78 E-value=63 Score=32.18 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=24.8
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELVP 82 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~~ 82 (308)
.+++|||+|.+|.-+|... .|.+| ++.|+..++
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~ 214 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS 214 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 5899999999999888542 35566 888875443
No 467
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=28.70 E-value=57 Score=33.13 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=22.9
Q ss_pred EEEEccChhHHHHHHhc--CC-CcE-EecCCCC
Q 021746 52 AAIVGGGRVGTALKEMG--KG-QDL-LVKRGEL 80 (308)
Q Consensus 52 i~IiG~G~vG~~~a~~~--~g-~~v-~v~Rg~~ 80 (308)
++|||+|.-|+..|.++ .| ..| +|-+|..
T Consensus 2 ~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 2 YIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred EEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 68999999999999664 34 356 8888854
No 468
>PRK06523 short chain dehydrogenase; Provisional
Probab=28.53 E-value=70 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=23.4
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|.|+ |.||..++... .|..| ++.|..
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence 367899996 79999999643 46666 788864
No 469
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=28.48 E-value=67 Score=35.03 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=25.1
Q ss_pred ccEEEEccChhHHHHHHh----c--CCCcE-EecCCCCCC
Q 021746 50 APAAIVGGGRVGTALKEM----G--KGQDL-LVKRGELVP 82 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~----~--~g~~v-~v~Rg~~~~ 82 (308)
|+|+|||+|..|..++.. + .+.++ +|.+..+++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 799999999999999842 1 23455 898887654
No 470
>PRK12320 hypothetical protein; Provisional
Probab=28.37 E-value=55 Score=34.96 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=23.9
Q ss_pred ccEEEEc-cChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 50 APAAIVG-GGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG-~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
|||.|.| .|-||+.+...+ .|+.| .+.|..+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~ 35 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPH 35 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 7899999 599999999643 57777 6777543
No 471
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=28.34 E-value=58 Score=32.44 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=24.1
Q ss_pred ccccEEEEcc-ChhHHHHHHh-c-CCCcE-EecCC
Q 021746 48 QVAPAAIVGG-GRVGTALKEM-G-KGQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg 78 (308)
..|||.|.|+ |-||+.+... . .|++| .+.|.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4599999996 9999999964 3 57777 66664
No 472
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=28.33 E-value=75 Score=28.29 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=22.2
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
..+++|.|+ |.||..++... .|..| ++.|++
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~ 49 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT 49 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 357788887 68999999643 46665 777763
No 473
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=28.25 E-value=54 Score=32.76 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=23.0
Q ss_pred ccccEEEEccChhHHHHHHhc--CC-CcE-EecCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KG-QDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g-~~v-~v~Rg 78 (308)
...++.|||+|.+|.+.+..+ +| .++ +..|.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT 211 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT 211 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 446799999999999999763 34 344 66664
No 474
>PLN02240 UDP-glucose 4-epimerase
Probab=28.24 E-value=62 Score=30.28 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.1
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
++|+|.|+ |.||..++..+ .|+.| .+.|.
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~ 38 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL 38 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 68999987 89999999643 57776 55553
No 475
>PRK08401 L-aspartate oxidase; Provisional
Probab=28.23 E-value=59 Score=32.48 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=21.3
Q ss_pred ccEEEEccChhHHHHHHh--cCCCcE-EecCC
Q 021746 50 APAAIVGGGRVGTALKEM--GKGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg 78 (308)
|.|+|||+|.-|..-|-. ..|..| +|.++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 789999999988776632 246566 77775
No 476
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=28.17 E-value=65 Score=29.67 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=22.3
Q ss_pred cccEEEEccChhHHHHHHh-c-CCCcE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg 78 (308)
..+++|+|+|.+|..++.. . .|..+ ++.|.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3678999999999999953 2 35555 66665
No 477
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=28.15 E-value=61 Score=32.06 Aligned_cols=32 Identities=31% Similarity=0.598 Sum_probs=24.7
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
.+++|||+|.+|.=++... .|.+| ++.|+..+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 5789999999998888542 35566 89998764
No 478
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=28.10 E-value=65 Score=28.10 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=21.3
Q ss_pred cccEEEEccChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
..+|+|||.|+-|-..|.-+ .|.+| +-.|..+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTC
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCC
Confidence 35799999999999999543 57787 4555443
No 479
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=28.10 E-value=61 Score=30.45 Aligned_cols=30 Identities=33% Similarity=0.352 Sum_probs=22.4
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
++|.|.|+ |-||+.++..+ .|++| .+.|..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 34 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRS 34 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCC
Confidence 46788886 89999999643 57777 667753
No 480
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.96 E-value=77 Score=27.51 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=22.8
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
.++++|.|+ |.||..++... .|..| ++.|..
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~ 39 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGANVVINYASS 39 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367888886 79999999653 46676 777753
No 481
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=27.89 E-value=1.1e+02 Score=25.94 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=21.8
Q ss_pred ccccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL 80 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~ 80 (308)
...+++|||.|.-+-=.+.. . .|..| ++.|.+.
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 45789999999988877743 2 46666 9998753
No 482
>PRK08267 short chain dehydrogenase; Provisional
Probab=27.70 E-value=68 Score=28.56 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred cEEEEcc-ChhHHHHHHh-c-CCCcE-EecCCC
Q 021746 51 PAAIVGG-GRVGTALKEM-G-KGQDL-LVKRGE 79 (308)
Q Consensus 51 ~i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg~ 79 (308)
+++|.|+ |.||..++.. . .|..| ++.|+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 35 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINE 35 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4788885 7899999964 3 46666 777754
No 483
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.67 E-value=52 Score=31.98 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=22.8
Q ss_pred cccEEEEccChhHHH---HH-HhcCCCcEEecCCCC
Q 021746 49 VAPAAIVGGGRVGTA---LK-EMGKGQDLLVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~---~a-~~~~g~~v~v~Rg~~ 80 (308)
.+++.|+|+|++|.+ || +||+ +++.|.|+..
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~ 216 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSK 216 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCch
Confidence 478999999988765 45 5664 4558999863
No 484
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=27.66 E-value=68 Score=31.45 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=23.1
Q ss_pred ccEEEEccChhHHHHHHhc--C----CCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--K----GQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~----g~~v-~v~Rg~~~ 81 (308)
++|+|||+|--|...|..+ . |++| ++-+..++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 6899999998888877443 3 6777 66665543
No 485
>PLN02507 glutathione reductase
Probab=27.64 E-value=61 Score=32.82 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=0.0
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
+++|||+|.+|.=+|... .|.+| +|.|+.++
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
No 486
>PRK06180 short chain dehydrogenase; Provisional
Probab=27.55 E-value=70 Score=29.00 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=22.6
Q ss_pred ccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCC
Q 021746 50 APAAIVGG-GRVGTALKEMG--KGQDL-LVKRGE 79 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~ 79 (308)
++++|.|+ |.||..++... .|+.| .+.|..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~ 38 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSE 38 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCH
Confidence 46888887 78999999653 47776 788853
No 487
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=27.52 E-value=64 Score=32.07 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=24.1
Q ss_pred ccEEEEccChhHHHHHHhc--CCCcE-EecCCCCC
Q 021746 50 APAAIVGGGRVGTALKEMG--KGQDL-LVKRGELV 81 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg~~~ 81 (308)
-+++|||+|.+|.-+|... .|.+| +|.|++.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 5899999999999888542 35566 88887653
No 488
>PLN02268 probable polyamine oxidase
Probab=27.45 E-value=58 Score=31.80 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=19.2
Q ss_pred cEEEEccChhHHHHHHhc--CCCcE-Eec
Q 021746 51 PAAIVGGGRVGTALKEMG--KGQDL-LVK 76 (308)
Q Consensus 51 ~i~IiG~G~vG~~~a~~~--~g~~v-~v~ 76 (308)
+++|||+|--|..-|..+ .|.+| ++-
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlE 30 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLE 30 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence 689999998888877543 47776 443
No 489
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=27.23 E-value=80 Score=32.45 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=22.6
Q ss_pred ccccEEEEccChhHHHHHHh--cCCCcE-EecCCC
Q 021746 48 QVAPAAIVGGGRVGTALKEM--GKGQDL-LVKRGE 79 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~--~~g~~v-~v~Rg~ 79 (308)
+...++|||+|..|..-|-. .+|.+| +|-+..
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~ 40 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAP 40 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45789999999888766632 246666 777754
No 490
>PRK07831 short chain dehydrogenase; Provisional
Probab=27.13 E-value=66 Score=28.75 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=21.3
Q ss_pred ccEEEEcc-C-hhHHHHHHhc--CCCcE-EecCC
Q 021746 50 APAAIVGG-G-RVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 50 m~i~IiG~-G-~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
.+++|.|+ | +||..++... .|..| ++.|+
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~ 51 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIH 51 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCC
Confidence 57899997 6 6999999653 46666 55665
No 491
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=27.11 E-value=76 Score=34.49 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=22.8
Q ss_pred ccccEEEEccChhHHHHHHhc--CCCcE-EecCC
Q 021746 48 QVAPAAIVGGGRVGTALKEMG--KGQDL-LVKRG 78 (308)
Q Consensus 48 ~~m~i~IiG~G~vG~~~a~~~--~g~~v-~v~Rg 78 (308)
...+++|||+|--|...|..+ .|+.| ++-+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~ 270 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGR 270 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecc
Confidence 347899999999888888643 57776 55554
No 492
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=27.10 E-value=60 Score=33.34 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=20.2
Q ss_pred ccEEEEccChhHHHHHHh-c-CCCcE-EecCCCC
Q 021746 50 APAAIVGGGRVGTALKEM-G-KGQDL-LVKRGEL 80 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~~-~-~g~~v-~v~Rg~~ 80 (308)
-+|+|||+|.-|..-+.. . .|.++ .+-|.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 378999999999988853 2 56775 7777553
No 493
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=27.09 E-value=1.1e+02 Score=21.94 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=28.2
Q ss_pred hHHHHHH--HHHHHHHHHHHhcCCCCChHHHHHHHHHhhhcCCCCcchhhhhhhhh
Q 021746 224 YRSEVSA--LIAELALAAAAEKGITFDPAMEDRLCAYSRAVANFPTAVKEFKWRNG 277 (308)
Q Consensus 224 ~~~~~~~--lm~Ev~avA~a~~Gv~l~~~~~e~~~~~~~~~~~~~t~~~Ei~~~nG 277 (308)
.++.+.+ =++|++++|+. .|+.+..+-++.. ....+..|++.++|
T Consensus 17 L~~~l~~~~~~e~~~~lA~~-~Gf~ft~~el~~~--------~~elsd~eL~~vaG 63 (64)
T TIGR03798 17 LREKLKAAEDPEDRVAIAKE-AGFEFTGEDLKEA--------GEELSDEELEAVAG 63 (64)
T ss_pred HHHHHHHcCCHHHHHHHHHH-cCCCCCHHHHHHH--------HhhCCHHHHHhhcC
Confidence 4444444 36899999986 7999997555532 12233446666665
No 494
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=27.08 E-value=43 Score=32.33 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=17.1
Q ss_pred ccEEEEcc-ChhHHHHHHhc
Q 021746 50 APAAIVGG-GRVGTALKEMG 68 (308)
Q Consensus 50 m~i~IiG~-G~vG~~~a~~~ 68 (308)
|+|+|+|+ |.+|.-+.++.
T Consensus 1 ~kVaIiGATG~vG~ellr~L 20 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLL 20 (346)
T ss_pred CEEEEECCCCHHHHHHHHHH
Confidence 68999999 99999999864
No 495
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=27.04 E-value=31 Score=27.48 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.3
Q ss_pred ccEEEEccChhHHHHHH
Q 021746 50 APAAIVGGGRVGTALKE 66 (308)
Q Consensus 50 m~i~IiG~G~vG~~~a~ 66 (308)
|||.|||.|+=--.++.
T Consensus 1 MkVLviGsGgREHAia~ 17 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAW 17 (100)
T ss_dssp EEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHH
Confidence 89999999977777774
No 496
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=26.96 E-value=66 Score=28.33 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=38.8
Q ss_pred EEEEcc-ChhHHHHHHh-c-CCCcE-EecCCCCCC-C---CCCCcEEEEecCccHHHHHHhCCCCCCCeEEEEecCC
Q 021746 52 AAIVGG-GRVGTALKEM-G-KGQDL-LVKRGELVP-L---DFEGPIFVCTRNDDLEAVLEAAPRSRWNDLVFFQNGM 120 (308)
Q Consensus 52 i~IiG~-G~vG~~~a~~-~-~g~~v-~v~Rg~~~~-~---~~~~~IlvatK~~dl~~~l~~l~~~~~t~IV~LQNGl 120 (308)
|+|+|+ |.+|+.+... . .++.| .+.|..+-. . ...+..+|..--++.++..+.+... +.|+++....
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~--d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGV--DAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTC--SEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCC--ceEEeecCcc
Confidence 689997 9999999964 3 46667 889985211 0 1124455555445666665555543 3444444433
No 497
>PRK06841 short chain dehydrogenase; Provisional
Probab=26.92 E-value=68 Score=28.34 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=23.6
Q ss_pred cccEEEEcc-ChhHHHHHHhc--CCCcE-EecCCCC
Q 021746 49 VAPAAIVGG-GRVGTALKEMG--KGQDL-LVKRGEL 80 (308)
Q Consensus 49 ~m~i~IiG~-G~vG~~~a~~~--~g~~v-~v~Rg~~ 80 (308)
..++.|.|+ |.||..++... .|..| ++.|+..
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED 50 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357899996 89999999642 46666 7788653
No 498
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=26.84 E-value=33 Score=32.94 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=15.5
Q ss_pred cccEEEEccChhHHHHH
Q 021746 49 VAPAAIVGGGRVGTALK 65 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a 65 (308)
.|+|+|||+|-||.-=|
T Consensus 3 ~~~iaViGaGVIGlsTA 19 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTA 19 (342)
T ss_pred CccEEEEcCCeechhHH
Confidence 48999999999999887
No 499
>PLN00203 glutamyl-tRNA reductase
Probab=26.82 E-value=56 Score=33.55 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=23.1
Q ss_pred cccEEEEccChhHHHHHHhc--CCC-cE-EecCC
Q 021746 49 VAPAAIVGGGRVGTALKEMG--KGQ-DL-LVKRG 78 (308)
Q Consensus 49 ~m~i~IiG~G~vG~~~a~~~--~g~-~v-~v~Rg 78 (308)
..+++|||+|.+|.+.+..+ .|. ++ ++.|.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs 299 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS 299 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 57899999999999999643 453 34 77776
No 500
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.78 E-value=82 Score=29.99 Aligned_cols=47 Identities=13% Similarity=0.235 Sum_probs=31.3
Q ss_pred CCccCCCcccchhhccccc--ccccccEEEEc-cChhHHHHHHhc--CCCcE
Q 021746 27 KPRFAKPTPVSAFAMASFT--TTQVAPAAIVG-GGRVGTALKEMG--KGQDL 73 (308)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~--~~~~m~i~IiG-~G~vG~~~a~~~--~g~~v 73 (308)
++.|...++......+... +.+..+++||| .|-+|.-++.++ .|..|
T Consensus 134 ~~~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tV 185 (296)
T PRK14188 134 ETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATV 185 (296)
T ss_pred CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEE
Confidence 3445555555554444443 23557999999 999999999875 45555
Done!