Query 021747
Match_columns 308
No_of_seqs 132 out of 163
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2417 Predicted G-protein co 100.0 1.9E-92 4.2E-97 664.4 20.6 303 1-307 160-462 (462)
2 PF12430 ABA_GPCR: Abscisic ac 100.0 3E-57 6.5E-62 405.6 20.7 179 122-300 1-196 (196)
3 PF12537 DUF3735: Protein of u 99.7 4.7E-18 1E-22 129.4 3.0 51 1-51 21-72 (72)
4 PF04791 LMBR1: LMBR1-like mem 89.1 13 0.00029 37.2 14.7 61 186-258 364-425 (471)
5 PRK11546 zraP zinc resistance 80.8 9.5 0.0002 32.9 7.8 34 88-124 86-119 (143)
6 KOG0709 CREB/ATF family transc 69.5 31 0.00067 35.2 9.1 53 92-144 287-339 (472)
7 PF03350 UPF0114: Uncharacteri 68.8 45 0.00096 27.8 8.7 64 188-251 4-72 (124)
8 PF05082 Rop-like: Rop-like; 64.1 16 0.00035 27.5 4.5 52 91-151 2-53 (66)
9 TIGR02338 gimC_beta prefoldin, 57.1 1E+02 0.0022 24.8 11.1 95 29-123 8-106 (110)
10 PF06005 DUF904: Protein of un 56.1 69 0.0015 24.4 6.9 49 91-139 18-67 (72)
11 PF09753 Use1: Membrane fusion 54.5 52 0.0011 30.5 7.3 57 96-155 190-247 (251)
12 PF04123 DUF373: Domain of unk 51.8 2.5E+02 0.0054 27.7 14.3 152 116-290 148-310 (344)
13 PRK15422 septal ring assembly 51.7 75 0.0016 24.7 6.5 27 90-116 17-43 (79)
14 TIGR00985 3a0801s04tom mitocho 51.6 11 0.00025 32.6 2.3 31 128-168 6-36 (148)
15 COG3074 Uncharacterized protei 49.6 49 0.0011 25.3 5.0 49 91-139 18-74 (79)
16 PF14389 Lzipper-MIP1: Leucine 48.2 1.2E+02 0.0026 23.8 7.4 25 90-114 60-84 (88)
17 KOG2019 Metalloendoprotease HM 45.7 1.2E+02 0.0027 32.9 9.0 106 4-116 354-478 (998)
18 PRK09039 hypothetical protein; 43.5 3.2E+02 0.007 26.6 11.3 48 91-138 137-185 (343)
19 KOG1691 emp24/gp25L/p24 family 43.2 80 0.0017 29.0 6.4 40 88-127 131-170 (210)
20 KOG0250 DNA repair protein RAD 42.8 3E+02 0.0065 31.2 11.7 47 90-136 400-447 (1074)
21 PRK09343 prefoldin subunit bet 42.1 2E+02 0.0043 23.8 9.1 38 91-128 78-115 (121)
22 PF08317 Spc7: Spc7 kinetochor 41.5 2.6E+02 0.0057 26.9 10.2 31 26-56 208-238 (325)
23 PF14077 WD40_alt: Alternative 40.4 37 0.00079 23.8 2.9 22 91-112 18-39 (48)
24 PF10779 XhlA: Haemolysin XhlA 40.2 1.5E+02 0.0033 22.0 7.4 54 94-147 16-69 (71)
25 PF01486 K-box: K-box region; 39.3 1.7E+02 0.0038 23.0 7.3 29 23-51 45-73 (100)
26 PRK15422 septal ring assembly 39.2 1.9E+02 0.004 22.6 8.9 70 29-134 6-76 (79)
27 KOG3231 Predicted assembly/vac 39.1 2.6E+02 0.0057 25.0 8.7 31 93-123 38-73 (208)
28 COG4942 Membrane-bound metallo 38.4 4.4E+02 0.0096 26.8 11.4 28 27-54 73-100 (420)
29 PF00170 bZIP_1: bZIP transcri 37.6 1.2E+02 0.0026 21.9 5.6 34 91-124 26-59 (64)
30 PF03376 Adeno_E3B: Adenovirus 36.3 1.2E+02 0.0026 22.8 5.2 34 186-219 10-43 (67)
31 PRK10803 tol-pal system protei 36.3 2.9E+02 0.0062 25.9 9.3 28 92-119 76-103 (263)
32 PF07438 DUF1514: Protein of u 36.2 1.3E+02 0.0028 22.6 5.4 23 94-116 21-43 (66)
33 PRK11637 AmiB activator; Provi 35.9 4.5E+02 0.0098 26.1 11.5 32 25-56 45-76 (428)
34 KOG4056 Translocase of outer m 34.6 26 0.00057 30.1 1.8 23 136-168 16-38 (143)
35 PRK10361 DNA recombination pro 34.5 2.7E+02 0.0059 28.7 9.4 44 90-133 164-207 (475)
36 KOG0971 Microtubule-associated 34.5 2.7E+02 0.0058 31.2 9.6 103 25-127 1013-1128(1243)
37 PF01920 Prefoldin_2: Prefoldi 30.9 2.5E+02 0.0054 21.6 9.8 30 91-120 69-98 (106)
38 PF05377 FlaC_arch: Flagella a 30.2 1.8E+02 0.0039 21.1 5.3 32 94-125 3-34 (55)
39 PF12325 TMF_TATA_bd: TATA ele 29.6 1.7E+02 0.0036 24.5 5.8 35 90-124 29-63 (120)
40 PF14048 MBD_C: C-terminal dom 29.5 68 0.0015 25.8 3.3 17 24-40 73-89 (96)
41 KOG0994 Extracellular matrix g 29.4 3.2E+02 0.0069 31.6 9.3 29 90-118 1266-1294(1758)
42 PF12507 HCMV_UL139: Human Cyt 28.8 55 0.0012 27.5 2.7 46 92-137 45-90 (121)
43 KOG4098 Molecular chaperone Pr 28.5 3.8E+02 0.0082 23.0 10.6 101 23-126 14-114 (140)
44 PF02064 MAS20: MAS20 protein 28.3 19 0.00042 30.1 0.0 22 137-168 5-26 (121)
45 PF08232 Striatin: Striatin fa 27.8 1.6E+02 0.0034 24.9 5.5 42 91-132 32-75 (134)
46 PF07106 TBPIP: Tat binding pr 26.8 4.1E+02 0.0089 22.8 10.3 31 24-54 69-99 (169)
47 COG1579 Zn-ribbon protein, pos 26.7 5.3E+02 0.012 24.1 11.4 100 28-133 32-132 (239)
48 KOG0483 Transcription factor H 26.5 2.2E+02 0.0047 25.9 6.4 90 21-126 54-147 (198)
49 PF06005 DUF904: Protein of un 26.1 2.9E+02 0.0062 21.0 6.1 43 93-135 27-70 (72)
50 PRK05208 hypothetical protein; 25.8 4.6E+02 0.0099 23.2 8.2 23 229-251 56-78 (168)
51 smart00338 BRLZ basic region l 25.7 2.3E+02 0.005 20.3 5.4 33 91-123 26-58 (65)
52 PF04111 APG6: Autophagy prote 25.3 6.2E+02 0.013 24.4 11.2 31 91-121 78-108 (314)
53 cd00632 Prefoldin_beta Prefold 25.3 3.5E+02 0.0075 21.4 11.1 90 34-123 9-102 (105)
54 KOG2577 Transcription factor E 25.2 1.3E+02 0.0027 29.9 4.9 40 89-128 142-181 (354)
55 PF07787 DUF1625: Protein of u 24.6 1.4E+02 0.003 27.5 5.0 39 120-158 174-212 (248)
56 KOG1937 Uncharacterized conser 24.3 6.8E+02 0.015 25.9 9.9 37 90-126 351-387 (521)
57 PRK10803 tol-pal system protei 24.3 1.5E+02 0.0032 27.8 5.2 33 91-123 61-93 (263)
58 PF14854 LURAP: Leucine rich a 23.2 2.5E+02 0.0054 23.6 5.6 39 88-126 19-57 (121)
59 PF07716 bZIP_2: Basic region 23.0 2.6E+02 0.0056 19.5 5.1 28 92-119 26-53 (54)
60 COG4942 Membrane-bound metallo 22.9 8.2E+02 0.018 24.9 10.5 23 32-54 36-58 (420)
61 PF05667 DUF812: Protein of un 21.9 4.9E+02 0.011 27.6 8.9 29 92-120 455-483 (594)
62 PF11932 DUF3450: Protein of u 21.7 6.3E+02 0.014 23.1 11.4 34 90-123 83-116 (251)
63 TIGR01837 PHA_granule_1 poly(h 20.4 2.8E+02 0.0061 22.8 5.5 18 89-106 94-111 (118)
64 PF04799 Fzo_mitofusin: fzo-li 20.3 3.1E+02 0.0068 24.4 6.0 34 90-123 126-162 (171)
No 1
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-92 Score=664.39 Aligned_cols=303 Identities=53% Similarity=0.882 Sum_probs=283.6
Q ss_pred CccccchhhccchhhhhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhcc
Q 021747 1 MAVLAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTV 80 (308)
Q Consensus 1 mA~LSGfGAVs~Py~~~~~f~r~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (308)
||+||||||||+||+||++|.|||+|.||.++||||.||+||+.+||||+++++-+. +...++..++.++|+.|.++..
T Consensus 160 MAvLSGFGAVN~PYsyms~FiR~Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~~-~~l~~e~~~k~pSff~r~w~~~ 238 (462)
T KOG2417|consen 160 MAVLSGFGAVNAPYSYMSYFIRPVEETDIIQLERRLAQTMDMIISKKKKMAMAQLEE-KRLQSEKVQKEPSFFRRFWGMF 238 (462)
T ss_pred HHHHhccCccCCchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhcccCCcHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999888432 2222332455678888888743
Q ss_pred ccccCCcchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHhhhHHHHHHHHHHHHHHHHHhhc
Q 021747 81 VRSVQDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFK 160 (308)
Q Consensus 81 ~~~~~~~~~~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~~t~~~~~f~ 160 (308)
.++.++++.++|++.||+||++||+++||||+|+.||++.++|.++|+||+|+++|++||+||+||||||+++++|++|+
T Consensus 239 ~~~~~~~~~~~~i~~lq~EV~~LEeLsrqLFLE~~eLr~~ker~~~SkTfkG~yfN~LG~ffSiYCvwKif~s~inIvFd 318 (462)
T KOG2417|consen 239 SSSVQDNTLSSDIKLLQQEVEPLEELSRQLFLELVELRQMKERVAFSKTFKGKYFNVLGHFFSIYCVWKIFMSLINIVFD 318 (462)
T ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhhhHhHHHHHHHHHHHHHHHHhh
Confidence 34455566678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHH
Q 021747 161 EAGSVDPVTMTISIFLQFFDIGINAQLLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGM 240 (308)
Q Consensus 161 ~~~~~Dpit~~L~~~~~~~~~~~d~~~~s~~ISf~L~g~li~~S~r~~L~tl~~~~~~~~~~~s~~~~~~~L~laelmG~ 240 (308)
|.+++||+|+.+++.++++|++.|+..|+|||||+|+|+|+++|+||+|.|++||+++.++++++|. ++|+++|+|||
T Consensus 319 rvGk~DPVTr~IeI~v~~~gi~~Dv~fwsQyISf~lVG~i~vtSvRGll~tltkf~y~~~~s~ssn~--ivl~l~qimgm 396 (462)
T KOG2417|consen 319 RVGKVDPVTRGIEITVNYLGIDFDVSFWSQYISFFLVGVIAVTSVRGLLITLTKFFYSISSSKSSNI--IVLFLAQIMGM 396 (462)
T ss_pred hccCcCCccceeEEEEEEecccchHHHHHHHHHHHhhheeEEeehhhhhhhhhhhhheecccccccc--hHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHhcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 021747 241 YFVSSILLIRKSLAIEYRIIITEVLGGEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSRQADKHPI 307 (308)
Q Consensus 241 Y~iSt~lllRsnLP~~~~~~i~~~Lg~~l~f~~~~~wFD~iFliSa~~t~~~l~~~~~~~~~~~~~~ 307 (308)
||+|+++|||+|+|.|||.+++++|| +++|||||||||.+|++||+.|++++|++||.+..|+||.
T Consensus 397 yf~ssvllirms~p~Eyr~iit~VlG-dlqfnfyhRwfdviFl~Sa~~si~~L~l~~k~~~~~~~a~ 462 (462)
T KOG2417|consen 397 YFVSSVLLIRMSMPAEYRTIITEVLG-DLQFNFYHRWFDVIFLVSALSSILFLYLHHKSRQSDKHAI 462 (462)
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 99999999999999999999999999 8999999999999999999999999999999999998873
No 2
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=100.00 E-value=3e-57 Score=405.64 Aligned_cols=179 Identities=46% Similarity=0.778 Sum_probs=172.3
Q ss_pred HHHHhccchHhHHHHHhhhHHHHHHHHHHHHHHHHHhhcc---------------CCCCChHHHHHHHHHhhcccCccHH
Q 021747 122 EAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKE---------------AGSVDPVTMTISIFLQFFDIGINAQ 186 (308)
Q Consensus 122 ~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~~t~~~~~f~~---------------~~~~Dpit~~L~~~~~~~~~~~d~~ 186 (308)
||+++++|++||+++++||+|++||+|||++|++|+++.+ .+++||+|++|+++++++++++|++
T Consensus 1 ~r~~~s~T~~G~~~~~~g~~fsiYCvyki~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~Dpit~~l~~~~~~~~~~~d~~ 80 (196)
T PF12430_consen 1 ERQKRSSTLLGRLFNLLGYIFSIYCVYKIINTTLNIIFRRYSYSSSSPDDSSEASFSSSDPITRTLAILLSFFNIPIDVD 80 (196)
T ss_pred ChhhhCccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCHHHHHHHHHHHhCCCCCCHH
Confidence 5789999999999999999999999999999999998876 7799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHhc
Q 021747 187 LLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLAIEYRIIITEVLG 266 (308)
Q Consensus 187 ~~s~~ISf~L~g~li~~S~r~~L~tl~~~~~~~~~~~s~~~~~~~L~laelmG~Y~iSt~lllRsnLP~~~~~~i~~~Lg 266 (308)
+|+|||||+|+|+|++||+|+|+.|+.++++++|+..+.+..+++|++||+||+||+||+||||+|||+|++.+++++||
T Consensus 81 ~~s~~ISf~L~g~l~~~S~r~vl~t~~~~~~~~~~~~~~~~~~~~L~laelmGiY~iSt~lLlRsnLP~~~~~~i~~~Lg 160 (196)
T PF12430_consen 81 SWSRQISFLLSGVLFVTSIRGVLTTFSKFFRALPSSLSLSSNILVLFLAELMGIYFISTVLLLRSNLPPEYSSIITEILG 160 (196)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998665569999999999999999999999999999999999999
Q ss_pred --CCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 021747 267 --GEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSR 300 (308)
Q Consensus 267 --~~l~f~~~~~wFD~iFliSa~~t~~~l~~~~~~~ 300 (308)
+++||+|||+|||.+|++||++|++++|++||.|
T Consensus 161 ~~~~~~~~~~~~wFD~iFl~S~~~T~~~i~~~~~~~ 196 (196)
T PF12430_consen 161 ENSLLEFNFYDRWFDKIFLISAILTAVGIYVAHKHR 196 (196)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7799999999999999999999999999999975
No 3
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=99.70 E-value=4.7e-18 Score=129.43 Aligned_cols=51 Identities=45% Similarity=0.793 Sum_probs=49.4
Q ss_pred CccccchhhccchhhhhchhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 1 MAVLAGFGAVNLPYSYLSLFIREID-ESEIKALERQLMQSIETCIAKKKKII 51 (308)
Q Consensus 1 mA~LSGfGAVs~Py~~~~~f~r~Vt-~~dI~~~e~~l~~t~~~l~~Kk~rl~ 51 (308)
||+|||||||||||+++++|.|||+ |.||+++|++++||.++|.+||+|++
T Consensus 21 mAiLSG~gaVstpy~~~~~~~~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l~ 72 (72)
T PF12537_consen 21 MAILSGFGAVSTPYYYFSYFRRPVSRESDINNAERRLWHTRDMLVEKKKRLA 72 (72)
T ss_pred HHHHhhhhHHccHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999 99999999999999999999999874
No 4
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=89.12 E-value=13 Score=37.19 Aligned_cols=61 Identities=25% Similarity=0.424 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 021747 186 QLLSQYISLLFIGMLIVMSVRGFLM-NVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLAIEYR 258 (308)
Q Consensus 186 ~~~s~~ISf~L~g~li~~S~r~~L~-tl~~~~~~~~~~~s~~~~~~~L~laelmG~Y~iSt~lllRsnLP~~~~ 258 (308)
..+.+.++++++..|.+|+..|+.. .+.++.+-.+++.+.+. . -+-++.++.|..+|..+.
T Consensus 364 ~~~~~~~~~~~l~Ym~~ct~~glf~~~~f~~y~l~p~~ts~~~--s----------L~f~a~~l~Rl~~PL~fN 425 (471)
T PF04791_consen 364 GFLGQLLSFLFLFYMCFCTYYGLFKLKIFRFYPLVPHHTSDNS--S----------LFFSAIYLCRLAPPLCFN 425 (471)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHhhhhhheeccccCCCCchHH--H----------HHHHHHHHHHHHHHHHHH
Confidence 4466789999999999999999653 24333333333322221 1 122334455889998874
No 5
>PRK11546 zraP zinc resistance protein; Provisional
Probab=80.79 E-value=9.5 Score=32.94 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=24.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 88 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 124 (308)
Q Consensus 88 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~ 124 (308)
++++-|++|.+||..|.. +|+.+=.+++.+.++.
T Consensus 86 pD~~kI~aL~kEI~~Lr~---kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 86 PDSSKINAVAKEMENLRQ---SLDELRVKRDIAMAEA 119 (143)
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 445669999999988776 7776666666665554
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=69.45 E-value=31 Score=35.19 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHhhhHHHH
Q 021747 92 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSI 144 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~T~~Gr~~~~~g~~fsi 144 (308)
|=++|++.|+-||.=.+.|+.+|.+++..........|-.|+...++.+-|+.
T Consensus 287 eNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~~l 339 (472)
T KOG0709|consen 287 ENQELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSFCL 339 (472)
T ss_pred CcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHH
Confidence 34799999999999999999999999999888888888888887777766654
No 7
>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes.
Probab=68.78 E-value=45 Score=27.78 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----hccCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 021747 188 LSQYISLLFIGMLIVMSVRGFLMNVMKFFFAV-----SRVGSGSSSNVVLFLSEIMGMYFVSSILLIRK 251 (308)
Q Consensus 188 ~s~~ISf~L~g~li~~S~r~~L~tl~~~~~~~-----~~~~s~~~~~~~L~laelmG~Y~iSt~lllRs 251 (308)
.+|++.+..+-+++++++-=+......+...+ +...+.+..-+++-+-++.-+|.++++++|=.
T Consensus 4 ~sR~l~~~~vig~l~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~~ 72 (124)
T PF03350_consen 4 ASRWLVLPAVIGLLLGSVLLFVKGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIFA 72 (124)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888755555555544444 22222222347888999999999999998853
No 8
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=64.08 E-value=16 Score=27.50 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHhhhHHHHHHHHHHH
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMI 151 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~ 151 (308)
+++.+|+.||.-|.....++-.|||||-.. ++..+-.++.+.=-.|-+|+=.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEd---------LP~~w~~i~~vA~~ty~a~~~l 53 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAED---------LPTNWEEIPEVAQKTYDAYAEL 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------TTTTGGGHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------cchhHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999998643 2223333455555555555433
No 9
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.14 E-value=1e+02 Score=24.84 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhccccccCCc----chhHhHHHHHHHHHHHH
Q 021747 29 IKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDD----QKEQDIKIMEAEVQALE 104 (308)
Q Consensus 29 I~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~i~~L~~EI~~Le 104 (308)
....-+++.+.+..+.+++..+..-.+++......-..-+.+.-+.+.+|+++--.+.+ .-...+..++.+|+.|+
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~le 87 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQ 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555556666666555444443332222111122344556666555221110 00234555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021747 105 ELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 105 ~l~~~L~~el~~l~~~~~~ 123 (308)
.-...+-.++.+++...++
T Consensus 88 k~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 88 RQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555443
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.11 E-value=69 Score=24.35 Aligned_cols=49 Identities=27% Similarity=0.477 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHhHHHHHhh
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY-SRTWRGHMQNLLG 139 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~-s~T~~Gr~~~~~g 139 (308)
+.|..|+.|++.|+.=..++..+-.+|+..-++-+. -..|..|+-.++|
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887766666555555533333221 3335555555554
No 11
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=54.50 E-value=52 Score=30.46 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHhHHHHHhhhHHHHHHHHHHHHHHH
Q 021747 96 MEAEVQALEELSKQLFLEIYELRQAKEAAAY-SRTWRGHMQNLLGYALSIYCVYKMIKSLQ 155 (308)
Q Consensus 96 L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~-s~T~~Gr~~~~~g~~fsiYCvyKi~~t~~ 155 (308)
|+.+-.-|+.....+=.++..|...-.|.+. .+.-.| +|.+ ..++.+.|++ |++.++
T Consensus 190 l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-~~~~-~~i~~v~~~F-i~mvl~ 247 (251)
T PF09753_consen 190 LKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-CWTW-LMIFVVIIVF-IMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHH-HHHHHHHHHH-HHHHHH
Confidence 4445556666666666667777755555333 222222 3333 2445566665 444333
No 12
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=51.76 E-value=2.5e+02 Score=27.70 Aligned_cols=152 Identities=18% Similarity=0.315 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhccchHhHHHHHhhhHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHhhcccCccH--HH-HHHH-
Q 021747 116 ELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPVTMTISIFLQFFDIGINA--QL-LSQY- 191 (308)
Q Consensus 116 ~l~~~~~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~~t~~~~~f~~~~~~Dpit~~L~~~~~~~~~~~d~--~~-~s~~- 191 (308)
-+++....+++++|+.| ++|.++.+|-+..++...-.. .--++-++...+.+-+..+|. +. |.+.
T Consensus 148 YlKk~l~Dp~~~~~~lG----vPG~~lLiy~i~~l~~~~~~a-------~~~i~~~iG~yll~kGfgld~~~~~~~~~~~ 216 (344)
T PF04123_consen 148 YLKKALSDPEYRRTFLG----VPGLILLIYAILALLGYPAYA-------LGIILLLIGLYLLYKGFGLDDYLREWLERFR 216 (344)
T ss_pred HHHHhhcChhhhceeec----chHHHHHHHHHHHHHcchHHH-------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhc
Confidence 35667888999999999 999999999998886641110 111223344333333555553 33 4443
Q ss_pred -------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 021747 192 -------ISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLAIEYRIIITEV 264 (308)
Q Consensus 192 -------ISf~L~g~li~~S~r~~L~tl~~~~~~~~~~~s~~~~~~~L~laelmG~Y~iSt~lllRsnLP~~~~~~i~~~ 264 (308)
++|+-.-.-++..+-+.......+....+. ........++......+.+|.+. ......+++.
T Consensus 217 ~~l~~g~it~ityvva~~l~iig~i~g~~~~~~~~~~---~~~~~~~~f~~~~v~~~~~a~l~-------~~~G~iid~~ 286 (344)
T PF04123_consen 217 ESLYEGRITFITYVVALLLIIIGIIYGYLTLWSYYSI---SGLIVPGTFLYGSVPWLALAALI-------ASLGKIIDEY 286 (344)
T ss_pred cccccceeehHHHHHHHHHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 444433222222223322222222211110 01101122566666555555444 2345566677
Q ss_pred hcCCcccchhhhhhHHHHHHHHHHHH
Q 021747 265 LGGEIQFDFYHRWFDAIFVASAFLSL 290 (308)
Q Consensus 265 Lg~~l~f~~~~~wFD~iFliSa~~t~ 290 (308)
+++ ++..++.+.-..|.+++...+
T Consensus 287 l~~--~~~~~~~i~~~~~~~a~~~v~ 310 (344)
T PF04123_consen 287 LRR--DFRLWRYINAPFFVIAIGLVL 310 (344)
T ss_pred Hcc--CcchHHHHHHHHHHHHHHHHH
Confidence 765 555555555555555554443
No 13
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=51.69 E-value=75 Score=24.75 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 90 EQDIKIMEAEVQALEELSKQLFLEIYE 116 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~ 116 (308)
.+.|.-|++||+-|++=..+|..|...
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999988888887666
No 14
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=51.60 E-value=11 Score=32.60 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=22.9
Q ss_pred cchHhHHHHHhhhHHHHHHHHHHHHHHHHHhhccCCCCChH
Q 021747 128 RTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPV 168 (308)
Q Consensus 128 ~T~~Gr~~~~~g~~fsiYCvyKi~~t~~~~~f~~~~~~Dpi 168 (308)
+|..+-...+.+.+|.-|||| ||+...+||-
T Consensus 6 ~~~~~~~ag~a~~~flgYciY----------FD~KRR~dPd 36 (148)
T TIGR00985 6 KSNVVIAAGIAAAAFLGYAIY----------FDYKRRNDPD 36 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----------hhhhhccCHH
Confidence 344454455778999999987 8887788886
No 15
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.60 E-value=49 Score=25.30 Aligned_cols=49 Identities=24% Similarity=0.502 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hccchHhHHHHHhh
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA--------YSRTWRGHMQNLLG 139 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~--------~s~T~~Gr~~~~~g 139 (308)
+-|.-|++||+.|++=..+|-.|..+++..++.-. .-+.|.-|+-.++|
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999988887664433221 13445555555554
No 16
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=48.18 E-value=1.2e+02 Score=23.80 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=14.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 021747 90 EQDIKIMEAEVQALEELSKQLFLEI 114 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el 114 (308)
-.||+.|+.||.-||.=-.+||.++
T Consensus 60 L~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 60 LEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665544555444
No 17
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=45.69 E-value=1.2e+02 Score=32.91 Aligned_cols=106 Identities=17% Similarity=0.283 Sum_probs=60.1
Q ss_pred ccchh---hccchhhh------hchhcccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhccchhhhhhh
Q 021747 4 LAGFG---AVNLPYSY------LSLFIREIDESEIKALERQLMQSIETCIAKK---KKIILCQMEMDRIQGSEEKLKARS 71 (308)
Q Consensus 4 LSGfG---AVs~Py~~------~~~f~r~Vt~~dI~~~e~~l~~t~~~l~~Kk---~rl~~~~~~~~~~~~~~~~~~~~~ 71 (308)
=||.| +||+-|.- |+.-.+-|+|.||+..|.-.+.|.+-++.++ .|++..-.+++-+... ++.+.|
T Consensus 354 ESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~--qst~fG 431 (998)
T KOG2019|consen 354 ESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKH--QSTGFG 431 (998)
T ss_pred HcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhc--cccchh
Confidence 38888 78887763 3444688999999999999999999888754 3444333333321111 111122
Q ss_pred hhhhhhhccccccCCcc-------hhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 72 FFKRIVGTVVRSVQDDQ-------KEQDIKIMEAEVQALEELSKQLFLEIYE 116 (308)
Q Consensus 72 ~~~~v~~~~~~~~~~~~-------~~~~i~~L~~EI~~Le~l~~~L~~el~~ 116 (308)
+ +-+. ++...|..+. -+++++.|++.++. =+..+|.++.+
T Consensus 432 L-~L~~-~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~e---k~~~lfq~lIk 478 (998)
T KOG2019|consen 432 L-SLMQ-SIISKWINDMDPFEPLKFEEQLKKLKQRLAE---KSKKLFQPLIK 478 (998)
T ss_pred H-HHHH-HHhhhhccCCCccchhhhhhHHHHHHHHHhh---hchhHHHHHHH
Confidence 2 1111 2223343221 13677778876653 14556665544
No 18
>PRK09039 hypothetical protein; Validated
Probab=43.49 E-value=3.2e+02 Score=26.64 Aligned_cols=48 Identities=8% Similarity=0.114 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHhHHHHHh
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY-SRTWRGHMQNLL 138 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~-s~T~~Gr~~~~~ 138 (308)
.++..|++||++|+.--.++-.+|.+.+.+.+..+. -.....++.+.+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766776677766655544333 344455554443
No 19
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.22 E-value=80 Score=29.00 Aligned_cols=40 Identities=28% Similarity=0.499 Sum_probs=35.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021747 88 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 127 (308)
Q Consensus 88 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s 127 (308)
...+++..++.|+.-||.+..++..|+.-|+.|.++.+.-
T Consensus 131 AKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~ 170 (210)
T KOG1691|consen 131 AKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNT 170 (210)
T ss_pred HhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3356788999999999999999999999999999887773
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=42.76 E-value=3e+02 Score=31.19 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=36.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHhHHHH
Q 021747 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY-SRTWRGHMQN 136 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~-s~T~~Gr~~~ 136 (308)
+..+..|++||+.+|+...+|-.|+.++++...+.+. ..+..|+...
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4578999999999999999999999999877766555 3345565544
No 21
>PRK09343 prefoldin subunit beta; Provisional
Probab=42.10 E-value=2e+02 Score=23.77 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=27.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSR 128 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~ 128 (308)
..+..++.+|..||.=...+-..+.+++...++...+.
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777888888888888888888887777655543
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.48 E-value=2.6e+02 Score=26.90 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021747 26 ESEIKALERQLMQSIETCIAKKKKIILCQME 56 (308)
Q Consensus 26 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 56 (308)
..+++.+...+......|.++|++++.++.+
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~e 238 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEE 238 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666665555544
No 23
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=40.36 E-value=37 Score=23.83 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 021747 91 QDIKIMEAEVQALEELSKQLFL 112 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~ 112 (308)
...++|+.|+..|..+.+.||.
T Consensus 18 vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHHh
Confidence 4578999999999999999985
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=40.21 E-value=1.5e+02 Score=21.98 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHhhhHHHHHHH
Q 021747 94 KIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCV 147 (308)
Q Consensus 94 ~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~T~~Gr~~~~~g~~fsiYCv 147 (308)
..++.+++.||.=....-.++..+..+..+.....+|.-|...-....+.+|-+
T Consensus 16 ~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 16 DNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555556666666666666666655543333333334433
No 25
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.35 E-value=1.7e+02 Score=22.95 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 23 EIDESEIKALERQLMQSIETCIAKKKKII 51 (308)
Q Consensus 23 ~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~ 51 (308)
+.+-.|+..+|++++.++.-+.+||.++-
T Consensus 45 ~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l 73 (100)
T PF01486_consen 45 SLSLKELQQLEQQLESALKRVRSRKDQLL 73 (100)
T ss_pred ccchHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 45556677778777777777777666543
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.18 E-value=1.9e+02 Score=22.61 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhccccccCCcchhHhHHHHHHHHHHHHHHHH
Q 021747 29 IKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELSK 108 (308)
Q Consensus 29 I~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~L~~EI~~Le~l~~ 108 (308)
+..+|.+..++.|.|.-=+-++..++.+. ..|.+|++.+.+=+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn------------------------------------~~L~~e~~~~~~~r~ 49 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKN------------------------------------NSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHhhHH
Confidence 56788888899888855555555554321 134555555555555
Q ss_pred HHHHHHHHHHHHHHH-HHhccchHhHH
Q 021747 109 QLFLEIYELRQAKEA-AAYSRTWRGHM 134 (308)
Q Consensus 109 ~L~~el~~l~~~~~~-~~~s~T~~Gr~ 134 (308)
.|-.+-..|+.++.. +.+-+.+.||+
T Consensus 50 ~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 50 ELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666655554 33355555554
No 27
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.13 E-value=2.6e+02 Score=24.98 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 021747 93 IKIMEAEVQALEE-----LSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 93 i~~L~~EI~~Le~-----l~~~L~~el~~l~~~~~~ 123 (308)
.++|++||.-+-. -.+.|..+|++|+.++.|
T Consensus 38 Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtr 73 (208)
T KOG3231|consen 38 EKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTR 73 (208)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhh
Confidence 3455555554433 356788888888766544
No 28
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=38.38 E-value=4.4e+02 Score=26.76 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 27 SEIKALERQLMQSIETCIAKKKKIILCQ 54 (308)
Q Consensus 27 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~ 54 (308)
.||++.+.++.++-+.+...+++|+.++
T Consensus 73 ~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 73 TEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 3455555555555555555555555444
No 29
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.59 E-value=1.2e+02 Score=21.87 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=27.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 124 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~ 124 (308)
..+..|+.++..|+....+|-.++..|......-
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999888888888888887766543
No 30
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=36.33 E-value=1.2e+02 Score=22.84 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 021747 186 QLLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAV 219 (308)
Q Consensus 186 ~~~s~~ISf~L~g~li~~S~r~~L~tl~~~~~~~ 219 (308)
..|..++=|.++.++-+||+-.++.++..++.++
T Consensus 10 ~pf~vYlif~fv~c~~iCSi~~~~it~~Q~iDy~ 43 (67)
T PF03376_consen 10 PPFAVYLIFAFVTCTCICSIVCFVITFFQCIDYI 43 (67)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999999998876553
No 31
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.28 E-value=2.9e+02 Score=25.88 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 92 DIKIMEAEVQALEELSKQLFLEIYELRQ 119 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~ 119 (308)
++.+++.|++.+.+=.+++|.||+++..
T Consensus 76 ~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 76 QIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888999999988654
No 32
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=36.21 E-value=1.3e+02 Score=22.63 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021747 94 KIMEAEVQALEELSKQLFLEIYE 116 (308)
Q Consensus 94 ~~L~~EI~~Le~l~~~L~~el~~ 116 (308)
+.++.|+++|+.+..-|+.++.+
T Consensus 21 s~lr~eiealkY~N~yL~~~~v~ 43 (66)
T PF07438_consen 21 SELRKEIEALKYMNDYLFDQFVR 43 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999887765
No 33
>PRK11637 AmiB activator; Provisional
Probab=35.86 E-value=4.5e+02 Score=26.12 Aligned_cols=32 Identities=3% Similarity=0.177 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021747 25 DESEIKALERQLMQSIETCIAKKKKIILCQME 56 (308)
Q Consensus 25 t~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 56 (308)
.+.++.+.++++......+...++++..++.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777666666665555555444433
No 34
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.58 E-value=26 Score=30.14 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=17.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCCCChH
Q 021747 136 NLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPV 168 (308)
Q Consensus 136 ~~~g~~fsiYCvyKi~~t~~~~~f~~~~~~Dpi 168 (308)
.+.|..|.-||+| |+....+||=
T Consensus 16 giag~af~gYciY----------Fd~KRrsdP~ 38 (143)
T KOG4056|consen 16 GIAGLAFIGYCIY----------FDKKRRSDPD 38 (143)
T ss_pred HHHHHHHHHHHhh----------cccccccChh
Confidence 4788999999987 6666666665
No 35
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=34.52 E-value=2.7e+02 Score=28.70 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=34.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhH
Q 021747 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGH 133 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~T~~Gr 133 (308)
..+-.+|+.||..|.++..+|..|-..|.+..+.....+--+|-
T Consensus 164 ~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE 207 (475)
T PRK10361 164 AQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGE 207 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHH
Confidence 46678999999999999999999999999888665444444454
No 36
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.46 E-value=2.7e+02 Score=31.25 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccch--------hhhhhhhhhhhhhccc----cc-cCCcchhH
Q 021747 25 DESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEE--------KLKARSFFKRIVGTVV----RS-VQDDQKEQ 91 (308)
Q Consensus 25 t~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~----~~-~~~~~~~~ 91 (308)
++.++..+|+.++.|+|+|..+=.++..-+.....+....+ ...+.|+=.++-|... +| ..++....
T Consensus 1013 ~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~~~~k~q~~s~~~~~~~ist~~sG~~s~~~~~s~~~g~a~~g 1092 (1243)
T KOG0971|consen 1013 TQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNSQSKKTQEGSRGPPPSGISTLVSGIASEEQQRSAIPGQALVG 1092 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhcccccCccccCCCCcceeccccCCCCCccccccCCCccccc
Confidence 34578899999999999998865555433322222111000 0011111111111000 00 01112233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021747 92 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 127 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s 127 (308)
+---|.+||+.|..-.++.-.|-.+|+...-|+..+
T Consensus 1093 ~~p~l~~qin~l~na~~qer~er~~Lkg~~mra~~a 1128 (1243)
T KOG0971|consen 1093 DSPLLLQQINALRNAISQERHERSILKGAQMRASLA 1128 (1243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 455677888888888888878888877777666543
No 37
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.93 E-value=2.5e+02 Score=21.63 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=17.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQA 120 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~ 120 (308)
.++..++.||+.|+.-...+-.++.+++..
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666655544
No 38
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.20 E-value=1.8e+02 Score=21.10 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 94 KIMEAEVQALEELSKQLFLEIYELRQAKEAAA 125 (308)
Q Consensus 94 ~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~ 125 (308)
.+|++|+..++..-..+-.|..+++...++.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555555555555555554433
No 39
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.64 E-value=1.7e+02 Score=24.45 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=29.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 124 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~ 124 (308)
+.|+..++.|+..|+.-+..+..|+.++-.+-+..
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999887666554
No 40
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=29.55 E-value=68 Score=25.77 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHHH
Q 021747 24 IDESEIKALERQLMQSI 40 (308)
Q Consensus 24 Vt~~dI~~~e~~l~~t~ 40 (308)
|||.||++-|++-..+.
T Consensus 73 VT~eDIr~QE~rVk~aR 89 (96)
T PF14048_consen 73 VTEEDIRRQERRVKKAR 89 (96)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999888763
No 41
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.44 E-value=3.2e+02 Score=31.63 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=23.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 90 EQDIKIMEAEVQALEELSKQLFLEIYELR 118 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~ 118 (308)
..++..|+.|..+|..+.++|-..+..++
T Consensus 1266 ~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1266 GKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788999999999988888877766654
No 42
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=28.78 E-value=55 Score=27.49 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHH
Q 021747 92 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNL 137 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~T~~Gr~~~~ 137 (308)
.+-+++.+|+.|++=......|+..++.+.++.++..+-++|+++.
T Consensus 45 ~~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~a 90 (121)
T PF12507_consen 45 KILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYEA 90 (121)
T ss_pred HHHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhhh
Confidence 3456778888888887778888888887777777777777777653
No 43
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=28.51 E-value=3.8e+02 Score=23.00 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhccccccCCcchhHhHHHHHHHHHH
Q 021747 23 EIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQA 102 (308)
Q Consensus 23 ~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~L~~EI~~ 102 (308)
|....-+...-.++++-+..|.+|=-+|.+-.++...-.....+..+..--.|++++.. -+..-.+-+..|+.-.++
T Consensus 14 ~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvL---VErTVkeVlP~L~~nke~ 90 (140)
T KOG4098|consen 14 PSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVL---VERTVKEVLPILQTNKEN 90 (140)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccch---hhhhHHHHhHHHHhhHHH
Confidence 45555667777777777777777666655544443322211101111122336665433 122224568899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021747 103 LEELSKQLFLEIYELRQAKEAAAY 126 (308)
Q Consensus 103 Le~l~~~L~~el~~l~~~~~~~~~ 126 (308)
|+...+.|..+|.+...+....+.
T Consensus 91 i~~~i~~l~~qL~~k~kElnkfk~ 114 (140)
T KOG4098|consen 91 IEKVIKKLTDQLVQKGKELNKFKK 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988777666554
No 44
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=28.27 E-value=19 Score=30.12 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhccCCCCChH
Q 021747 137 LLGYALSIYCVYKMIKSLQSVVFKEAGSVDPV 168 (308)
Q Consensus 137 ~~g~~fsiYCvyKi~~t~~~~~f~~~~~~Dpi 168 (308)
+.+.+|.-|||| ||+...+||-
T Consensus 5 ~a~~~~lgYciY----------FD~KRR~dP~ 26 (121)
T PF02064_consen 5 VAAAAFLGYCIY----------FDYKRRSDPD 26 (121)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHhh----------cccccccChH
Confidence 567889999987 7877777775
No 45
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=27.82 E-value=1.6e+02 Score=24.87 Aligned_cols=42 Identities=31% Similarity=0.350 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccchHh
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQ--AKEAAAYSRTWRG 132 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~--~~~~~~~s~T~~G 132 (308)
+.|+.|+-|..++|.+...|-.-+..|+. +++|.++.+...|
T Consensus 32 arIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~ 75 (134)
T PF08232_consen 32 ARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYG 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 56889999999999999999998888885 5555665554443
No 46
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.79 E-value=4.1e+02 Score=22.79 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 24 IDESEIKALERQLMQSIETCIAKKKKIILCQ 54 (308)
Q Consensus 24 Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~ 54 (308)
+++.++..+...+....+-+.+-+.+...++
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777666665555555444444443
No 47
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.73 E-value=5.3e+02 Score=24.12 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhccccccCCcchhHhHHHHHHHHHHHHHHH
Q 021747 28 EIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELS 107 (308)
Q Consensus 28 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~L~~EI~~Le~l~ 107 (308)
++..++..+....+-+.++..++..++.+..+-.... ..-+.-..+.-. - .+..++..++++|+.|+..++.=.
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei--~~~r~r~~~~e~-k---l~~v~~~~e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEI--QEIRERIKRAEE-K---LSAVKDERELRALNIEIQIAKERI 105 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-H---HhccccHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666665555554432210000 000000000000 0 122244678899999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHh-ccchHhH
Q 021747 108 KQLFLEIYELRQAKEAAAY-SRTWRGH 133 (308)
Q Consensus 108 ~~L~~el~~l~~~~~~~~~-s~T~~Gr 133 (308)
.+|-.|+.++..+++..+- ..-.+++
T Consensus 106 ~~le~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 106 NSLEDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877776443 3333443
No 48
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=26.52 E-value=2.2e+02 Score=25.89 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=58.4
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhccccc----cCCcchhHhHHHH
Q 021747 21 IREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRS----VQDDQKEQDIKIM 96 (308)
Q Consensus 21 ~r~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~i~~L 96 (308)
.|..+..++..+|+.+..-..+=-.+|.+|+..- |+=-|.+..||.. |.....+.+..-|
T Consensus 54 k~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L----------------gL~pRQVavWFQNRRARwK~kqlE~d~~~L 117 (198)
T KOG0483|consen 54 KRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL----------------GLQPRQVAVWFQNRRARWKTKQLEKDYESL 117 (198)
T ss_pred cccccHHHHHHhHHhhccccccChHHHHHHHHhh----------------CCChhHHHHHHhhccccccchhhhhhHHHH
Confidence 3457777777888777665544444555555321 1111222234422 5555567788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021747 97 EAEVQALEELSKQLFLEIYELRQAKEAAAY 126 (308)
Q Consensus 97 ~~EI~~Le~l~~~L~~el~~l~~~~~~~~~ 126 (308)
+.+.+.|..-...|-.|+.+|+........
T Consensus 118 k~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~ 147 (198)
T KOG0483|consen 118 KRQLESLRSENDRLQSEVQELVAELSSLKR 147 (198)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999877776444
No 49
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.09 E-value=2.9e+02 Score=20.95 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchHhHHH
Q 021747 93 IKIMEAEVQALEELSKQLFLEIYELRQAKEAA-AYSRTWRGHMQ 135 (308)
Q Consensus 93 i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~-~~s~T~~Gr~~ 135 (308)
+..|+.+-..|..=...|-.+...|+..+... .+-+.+.||+-
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555556666666666555553 33666666654
No 50
>PRK05208 hypothetical protein; Provisional
Probab=25.83 E-value=4.6e+02 Score=23.21 Aligned_cols=23 Identities=13% Similarity=0.456 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 021747 229 NVVLFLSEIMGMYFVSSILLIRK 251 (308)
Q Consensus 229 ~~~L~laelmG~Y~iSt~lllRs 251 (308)
-+++.+-++..+|.++++++|=+
T Consensus 56 ~~il~vl~lIDl~Lia~lLlIv~ 78 (168)
T PRK05208 56 DLILVVLSLIDVVLVANLLVMVI 78 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999854
No 51
>smart00338 BRLZ basic region leucin zipper.
Probab=25.70 E-value=2.3e+02 Score=20.34 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~ 123 (308)
..+..|+.++..|+.-...|-.++..|..+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888877766544
No 52
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.31 E-value=6.2e+02 Score=24.38 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 121 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~ 121 (308)
+++.+|+.|.+.|+..+.+.+.+.++++.+.
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~~~l 108 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQLEL 108 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666655555555333
No 53
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.27 E-value=3.5e+02 Score=21.43 Aligned_cols=90 Identities=20% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhccccccCCc----chhHhHHHHHHHHHHHHHHHHH
Q 021747 34 RQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDD----QKEQDIKIMEAEVQALEELSKQ 109 (308)
Q Consensus 34 ~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~i~~L~~EI~~Le~l~~~ 109 (308)
+.+.+.+.-+..++.++....+++......-..-..+.-+.+.+|.+|-..+-+ .-..++..++.+|+.++.=...
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666555444333222111111112233445556555321111 0123445555566655555555
Q ss_pred HHHHHHHHHHHHHH
Q 021747 110 LFLEIYELRQAKEA 123 (308)
Q Consensus 110 L~~el~~l~~~~~~ 123 (308)
+-.++.+++...++
T Consensus 89 l~~~~~elk~~l~~ 102 (105)
T cd00632 89 LQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566665555443
No 54
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=25.16 E-value=1.3e+02 Score=29.88 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=27.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021747 89 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSR 128 (308)
Q Consensus 89 ~~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~ 128 (308)
..++++.|++|++.|+.++..|=.-+..+++..+..-...
T Consensus 142 ~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~ 181 (354)
T KOG2577|consen 142 VPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDV 181 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3578888999999999988776666665555555444433
No 55
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=24.63 E-value=1.4e+02 Score=27.54 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=32.2
Q ss_pred HHHHHHhccchHhHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 021747 120 AKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVV 158 (308)
Q Consensus 120 ~~~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~~t~~~~~ 158 (308)
..+......||.-|+.-++-.+++++|+.+++.+++..+
T Consensus 174 ~~~~~n~~~tW~lR~~G~llmf~G~~~~~~~l~~l~~~~ 212 (248)
T PF07787_consen 174 KEHSANNTLTWILRFIGWLLMFIGFFLLFSPLYTLVDWI 212 (248)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445566678999999999999999999999988887653
No 56
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.34 E-value=6.8e+02 Score=25.87 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=24.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021747 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 126 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~ 126 (308)
..++.++-.||+.=|++..+|+.++..+-....|..|
T Consensus 351 eqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~y 387 (521)
T KOG1937|consen 351 EQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVY 387 (521)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHH
Confidence 3455555667777778888999998887764444333
No 57
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.33 E-value=1.5e+02 Score=27.79 Aligned_cols=33 Identities=6% Similarity=0.175 Sum_probs=27.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~ 123 (308)
.++..|++||..|.-.-.++-.|+..++++++.
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 467889999999988888888888888876665
No 58
>PF14854 LURAP: Leucine rich adaptor protein
Probab=23.25 E-value=2.5e+02 Score=23.57 Aligned_cols=39 Identities=13% Similarity=0.367 Sum_probs=31.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021747 88 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 126 (308)
Q Consensus 88 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~ 126 (308)
+-+..++.|++|..+|.++-..+-.+|-.+..-.++.++
T Consensus 19 ~Ld~kl~~Lr~EM~~LRqlDvkLL~QL~~vNEsIe~~KW 57 (121)
T PF14854_consen 19 NLDAKLAFLRKEMAGLRQLDVKLLQQLLAVNESIEEVKW 57 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 346889999999999999999888888777766655443
No 59
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=23.04 E-value=2.6e+02 Score=19.47 Aligned_cols=28 Identities=43% Similarity=0.439 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 92 DIKIMEAEVQALEELSKQLFLEIYELRQ 119 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~ 119 (308)
.+..|+.++..|+.-..+|..++..|+.
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777888888877777777777654
No 60
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.88 E-value=8.2e+02 Score=24.91 Aligned_cols=23 Identities=35% Similarity=0.175 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021747 32 LERQLMQSIETCIAKKKKIILCQ 54 (308)
Q Consensus 32 ~e~~l~~t~~~l~~Kk~rl~~~~ 54 (308)
.+++++++...|.++.+++...+
T Consensus 36 ~~~~l~q~q~ei~~~~~~i~~~~ 58 (420)
T COG4942 36 DDKQLKQIQKEIAALEKKIREQQ 58 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33677777777766666665543
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=21.91 E-value=4.9e+02 Score=27.62 Aligned_cols=29 Identities=41% Similarity=0.525 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 92 DIKIMEAEVQALEELSKQLFLEIYELRQA 120 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~~ 120 (308)
+++++..|+..-|++.++|-.|+..+-..
T Consensus 455 ~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 455 EIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444444444455555554444444333
No 62
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.71 E-value=6.3e+02 Score=23.14 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=23.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021747 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~ 123 (308)
..++.+|+.+|+.++..++++.--+.++....++
T Consensus 83 ~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 83 EQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887777776666555555544
No 63
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=20.43 E-value=2.8e+02 Score=22.78 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=14.0
Q ss_pred hhHhHHHHHHHHHHHHHH
Q 021747 89 KEQDIKIMEAEVQALEEL 106 (308)
Q Consensus 89 ~~~~i~~L~~EI~~Le~l 106 (308)
+.+++.+|+..|+.|+.-
T Consensus 94 tk~ev~~L~~RI~~Le~~ 111 (118)
T TIGR01837 94 SREEIEALSAKIEQLAVQ 111 (118)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356888999888888763
No 64
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=20.26 E-value=3.1e+02 Score=24.38 Aligned_cols=34 Identities=35% Similarity=0.404 Sum_probs=18.4
Q ss_pred hHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 021747 90 EQDIKIMEAEVQALEELSKQ---LFLEIYELRQAKEA 123 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~---L~~el~~l~~~~~~ 123 (308)
.+||++|+.||+.||.+.+. |-.....|+.+.++
T Consensus 126 ~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 126 EDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766433 33344444444433
Done!