Query 021748
Match_columns 308
No_of_seqs 136 out of 750
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ej5_A WAsp, wiskott-aldrich s 55.0 8.1 0.00028 30.0 2.9 19 284-305 87-105 (107)
2 2kih_A Matrix protein 2; S31N, 15.0 92 0.0031 19.6 2.0 28 187-226 3-30 (43)
3 2qkl_B SPAC19A8.12 protein, SP 14.2 1.4E+02 0.0048 22.3 3.2 50 117-166 23-76 (95)
4 1b9u_A Protein (ATP synthase); 13.1 2.2E+02 0.0077 16.4 4.2 25 27-51 8-32 (34)
5 3cx5_I Cytochrome B-C1 complex 11.4 33 0.0011 24.0 -1.0 15 284-299 40-54 (65)
6 2ljb_A M2 protein, BM2 protein 11.3 1.4E+02 0.0049 18.0 2.0 29 187-227 3-31 (35)
7 2pjx_C Syntaxin-4; membrane tr 10.3 91 0.0031 17.7 0.8 9 295-303 12-20 (29)
8 2jtx_A Transcription initiatio 9.1 1.1E+02 0.0037 23.5 1.1 12 297-308 44-55 (106)
9 2ca6_A RAN GTPase-activating p 6.8 1.1E+02 0.0038 27.4 0.3 15 294-308 342-356 (386)
10 2iu1_A EIF5, eukaryotic transl 6.3 1.4E+02 0.0049 25.4 0.7 18 291-308 152-169 (208)
No 1
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=55.01 E-value=8.1 Score=29.96 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=13.8
Q ss_pred HHHHhcCCcccccCCCCCCCCC
Q 021748 284 KQVQARGRVSEDVRSDSESDNE 305 (308)
Q Consensus 284 ~~~~~~g~~~~D~Rsd~e~~~~ 305 (308)
+++.+||++ |||+||||++
T Consensus 87 ~~~~~r~~~---i~s~~e~~~~ 105 (107)
T 1ej5_A 87 HVMQKRSRA---IHSSDEGEDQ 105 (107)
T ss_dssp HHGGGGSSC---CCCCCSSCCS
T ss_pred HHHHHHhhc---ccCCCccccc
Confidence 456666654 8999988875
No 2
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=15.04 E-value=92 Score=19.56 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=17.9
Q ss_pred cccchhHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHh
Q 021748 187 HDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLI 226 (308)
Q Consensus 187 HD~sDifL~~aK~~~y~~~~~~~~~~Fv~f~~~w~~~Rl~ 226 (308)
.|.||++.-+| ++.-++=.+.|+.-|++
T Consensus 3 ~dssdplv~aa------------~iiGIlHLiLwildRlf 30 (43)
T 2kih_A 3 NDSSDPLVVAA------------NIIGILHLILWILDRLF 30 (43)
T ss_dssp ---CCHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 46777776554 44556668889999985
No 3
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=14.21 E-value=1.4e+02 Score=22.33 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=32.7
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHH-Hh---hhhhcchhhhHhHHHHHHHH
Q 021748 117 WPDQKIKLKLKGVYMYAAGFYTYSIFAL-MF---WETRRADFGVSMGHHVATVI 166 (308)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~afy~~~~~~l-~f---~e~kRkD~~~m~~HHi~Ti~ 166 (308)
=|....+...++++.++.|+|.+.=+.. .. -.-.-|||.+++.+|+-.+.
T Consensus 23 ~P~eel~s~eRl~FqiEeA~WfY~Df~~~~np~Lp~~~lk~F~~~if~~cp~L~ 76 (95)
T 2qkl_B 23 LPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLW 76 (95)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHCTHHH
T ss_pred CCHHHhhhHHHHHHHHHhheeehcccccccCCCCCCCcHHHHHHHHHHhCHHHH
Confidence 5777788888999999999997531100 00 01123588888888866543
No 4
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=13.11 E-value=2.2e+02 Score=16.44 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021748 27 PLFALYFPSVRFFLEKFVFEKVAKR 51 (308)
Q Consensus 27 ~~~~~~~~~~R~~~~~~v~~pl~~~ 51 (308)
+.-++.+.++=.++.+++++|+.+-
T Consensus 8 ~~~~i~Flil~~~l~kf~~~Pi~~~ 32 (34)
T 1b9u_A 8 LGQAIAFVLFVLFCMKYVWPPLMAA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777788899999998864
No 5
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=11.36 E-value=33 Score=24.03 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=10.3
Q ss_pred HHHHhcCCcccccCCC
Q 021748 284 KQVQARGRVSEDVRSD 299 (308)
Q Consensus 284 ~~~~~~g~~~~D~Rsd 299 (308)
.... +||.=+||+..
T Consensus 40 ~~~N-kGKlwkDIk~k 54 (65)
T 3cx5_I 40 ENHN-KGKLWKDVKAR 54 (65)
T ss_dssp HHHT-TTTSHHHHHHH
T ss_pred Hhcc-CCCCcccChhh
Confidence 3344 48888898874
No 6
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=11.33 E-value=1.4e+02 Score=17.99 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=17.3
Q ss_pred cccchhHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHhH
Q 021748 187 HDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIY 227 (308)
Q Consensus 187 HD~sDifL~~aK~~~y~~~~~~~~~~Fv~f~~~w~~~Rl~~ 227 (308)
.|-||++.-+| ++.-++=.+.|+.-|++.
T Consensus 3 ~dSsDplviaA------------~IigiLHlilWildrLff 31 (35)
T 2ljb_A 3 NDSSDPLVVAA------------SIIGILHFIAWTIGHLNQ 31 (35)
T ss_dssp ---CCTHHHHH------------HHHHHHHHHHHHHHTHHH
T ss_pred CCCCCcHHHHH------------HHHHHHHHHHHHhhhhHh
Confidence 46667666444 445566678899988853
No 7
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=10.27 E-value=91 Score=17.65 Aligned_cols=9 Identities=44% Similarity=0.530 Sum_probs=5.0
Q ss_pred ccCCCCCCC
Q 021748 295 DVRSDSESD 303 (308)
Q Consensus 295 D~Rsd~e~~ 303 (308)
|.-||||+|
T Consensus 12 dnisddede 20 (29)
T 2pjx_C 12 DNISDDEDE 20 (29)
T ss_pred CCCCCccce
Confidence 555666554
No 8
>2jtx_A Transcription initiation factor IIE subunit alpha; TFIIE, TFIIH, activation domains, transcription regulation; NMR {Homo sapiens} PDB: 2rnq_A 2rnr_A
Probab=9.09 E-value=1.1e+02 Score=23.52 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 021748 297 RSDSESDNEHED 308 (308)
Q Consensus 297 Rsd~e~~~~~~~ 308 (308)
|+|+|+|+|+.+
T Consensus 44 ~~e~eeEdde~e 55 (106)
T 2jtx_A 44 REEDEEEDDEFE 55 (106)
T ss_dssp ---CCCCCCCCC
T ss_pred cccchhhhhhhh
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=6.81 E-value=1.1e+02 Score=27.37 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCC
Q 021748 294 EDVRSDSESDNEHED 308 (308)
Q Consensus 294 ~D~Rsd~e~~~~~~~ 308 (308)
+|..+|+|+|+|+|+
T Consensus 342 ~~~e~e~e~eeeee~ 356 (386)
T 2ca6_A 342 DMEELTDEEEEDEEE 356 (386)
T ss_dssp SCC------------
T ss_pred ccccccccccccccc
No 10
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=6.35 E-value=1.4e+02 Score=25.40 Aligned_cols=18 Identities=28% Similarity=0.507 Sum_probs=0.0
Q ss_pred CcccccCCCCCCCCCCCC
Q 021748 291 RVSEDVRSDSESDNEHED 308 (308)
Q Consensus 291 ~~~~D~Rsd~e~~~~~~~ 308 (308)
+.+++-=|++|||+|+||
T Consensus 152 ~EAEEEs~eeeeeeed~~ 169 (208)
T 2iu1_A 152 KEAEEESSGGEEEDEDEN 169 (208)
T ss_dssp HCSSCCCCCCCCCCCSCH
T ss_pred Hccccccccccccccccc
Done!