BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021750
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 104/191 (54%), Gaps = 8/191 (4%)
Query: 105 VAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI 164
+ E VK + D P E A VGRSNVGKSSLLN+L RK +A SKTPGKT+ I
Sbjct: 3 IRDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSI 61
Query: 165 NHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPI 224
N + +N +Y VDLPGYGYA ++ R W + +DYF NR +L VFLL+D IP +
Sbjct: 62 NFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDS 121
Query: 225 DLEYASWLGQNQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAPPWIMTS 284
DL W+ IP T+V TK D EE+ F + G + P TS
Sbjct: 122 DLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKL-EEHRKVFSK--YGEYTIIP----TS 174
Query: 285 SVTNQGRDEIL 295
SVT +G E+L
Sbjct: 175 SVTGEGISELL 185
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 11/202 (5%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
+V ++E V S+V+ E P GLPE AL GRSNVGKSS +NSL+ RK LA TS PGKTQ
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
+N + IND + VD+PGYG+A + R W + + Y R L +V ++D
Sbjct: 62 LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAP--PWI 281
D++ +L IP+ ++ TK D P+ + ++++ P I
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKAD---------KIPKGKWDKHAKVVRQTLNIDPEDELI 172
Query: 282 MTSSVTNQGRDEILLHMAQLRN 303
+ SS T +G+DE + ++ N
Sbjct: 173 LFSSETKKGKDEAWGAIKKMIN 194
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 80/141 (56%)
Query: 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
Q FV S+ PSD E A GRSN GKSS LN+L +K LA TSKTPG+TQ IN
Sbjct: 8 QTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67
Query: 167 FRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226
F + D LVDLPGYGYA P E++ W + +Y R +L + +L+D P K +D
Sbjct: 68 FEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ 127
Query: 227 EYASWLGQNQIPMTLVFTKCD 247
+ W + I + ++ TK D
Sbjct: 128 QMIEWAVDSNIAVLVLLTKAD 148
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
QA F + D P PE A GRSN GKS+ +N L +K+LA SKTPG+TQ IN+
Sbjct: 11 QARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY 70
Query: 167 FRINDS----WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK 222
F + + +LVDLPGYGYA P + W++ Y R L + L++DA P
Sbjct: 71 FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT 130
Query: 223 PIDLEYASWLGQNQIPMTLVFTKCD 247
+D W P+ + TKCD
Sbjct: 131 ELDRRMIEWFAPTGKPIHSLLTKCD 155
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 132 GRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSW---YLVDLPGYGYAAA-P 187
GRSNVGKS+L+ L +K K PG T+ I I W ++D PG+G+ P
Sbjct: 8 GRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKI----IEIEWKNHKIIDXPGFGFXXGLP 61
Query: 188 RE----LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-----------PIDLEYASWL 232
+E ++ + F +D N + L++D + PID+E+ +L
Sbjct: 62 KEVQERIKDEIVHFIED---NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 118
Query: 233 GQNQIPMTLVFTKCD 247
+ IP + K D
Sbjct: 119 RELDIPTIVAVNKLD 133
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 12/162 (7%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ--CINHFRINDSWY-LVDLPGYGY 183
+F L+GR NVGKSSL+N+++ +++ + S G T+ F N + +VD G
Sbjct: 197 QFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 255
Query: 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVF 243
E + ++RS +V+V L + I + D A + + + +V
Sbjct: 256 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHEAGKAVVIVV 313
Query: 244 TKCDXXXXXXXXXXXPEENLND-FQELIQGFFQTAPPWIMTS 284
K D EEN+ D FQ F AP M++
Sbjct: 314 NKWDAVDKDESTMKEFEENIRDHFQ-----FLDYAPILFMSA 350
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ 162
G P A+VGR NVGKS++ N + +++++ TPG T+
Sbjct: 22 GKPVVAIVGRPNVGKSTIFNRIA-GERISIVEDTPGVTR 59
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN---DSWYLVDLPG- 180
+ + +VGR NVGKSSL N L+ +K+ A+ + PG T+ + + + LVD G
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLL-KKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL 59
Query: 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT 240
+ ++++ D+ +D + V +D D E A +L + P+
Sbjct: 60 WSGDKWEKKIQEKVDRALEDAEV-------VLFAVDGRAELTQADYEVAEYLRRKGKPVI 112
Query: 241 LVFTKCD 247
LV TK D
Sbjct: 113 LVATKVD 119
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 13/167 (7%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ--CINHFRINDSWY-LVDLPGYGY 183
+F L+GR NVGKSSL+N+ + +++ + S G T+ F N + +VD G
Sbjct: 177 QFCLIGRPNVGKSSLVNAXLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRK 235
Query: 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVF 243
E + ++RS +V+V L + I + D A + + + +V
Sbjct: 236 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHEAGKAVVIVV 293
Query: 244 TKCDXXXXXXXXXXXPEENLND-FQELIQGFFQTAPPWIMTSSVTNQ 289
K D EEN+ D FQ F P + S++T +
Sbjct: 294 NKWDAVDKDESTXKEFEENIRDHFQ------FLDYAPILFXSALTKK 334
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ 162
G P A+VGR NVGKS++ N + +++++ TPG T+
Sbjct: 2 GKPVVAIVGRPNVGKSTIFNRIA-GERISIVEDTPGVTR 39
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYG 182
D L +VG N GKS+++N L + K+ + PG T+ I F + + ++D PG
Sbjct: 97 DRLARVLIVGVPNTGKSTIINKL-KGKRASSVGAQPGITKGIQWFSLENGVKILDTPGIL 155
Query: 183 Y 183
Y
Sbjct: 156 Y 156
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
++G NVGKS+L+N L +K +A T PG T ++ L+D PG
Sbjct: 125 IIGIPNVGKSTLINRLA-KKNIAKTGDRPGITTSQQWVKVGKELELLDTPG--------- 174
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG 233
W KF + LV + L + +I I+L+ + G
Sbjct: 175 --ILWPKFEDE-------LVGLRLAVTGAIKDSIINLQDVAVFG 209
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ 162
A+VGR NVGKS+L N+++ +++ AL S PG T+
Sbjct: 184 AIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTR 216
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ 162
+VGR NVGKS+L N LV++KK A+ G T+
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTR 37
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
A+VGR NVGKS+LLN L+ +K+++TS+ K Q H
Sbjct: 11 IAIVGRPNVGKSTLLNKLL-GQKISITSR---KAQTTRH 45
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
A+VGR NVGKS+LLN L+ +K+++TS+ K Q H
Sbjct: 8 IAIVGRPNVGKSTLLNKLL-GQKISITSR---KAQTTRH 42
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 10/55 (18%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT-----QCINH----FRINDSWYL 175
+ G+ N GKS+LLN+L+ +++ A+ S PG T +C H FR+ D+ L
Sbjct: 238 IAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRINDSWYLVDLPGYG 182
+ E AL+G N GK+SL N + + PG T + + N + DLPG
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRV--GNWPGVTVERKSGLVKKNKDLEIQDLPGI- 59
Query: 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
Y+ +P + +K +DY L++ S+ ++DA+ + +L + L + IP+T+
Sbjct: 60 YSMSP---YSPAEKVARDYLLSQRA-DSILNVVDATNLER--NLYLTTQLIETGIPVTIA 113
Query: 243 FTKCD 247
D
Sbjct: 114 LNMID 118
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ 162
+ A+VGR NVGKSSLLN+ + + A+ + PG T+
Sbjct: 226 KVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTR 260
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRINDSWYLVDLPGYG 182
+ E AL+G N GK+SL N + + PG T + + N + DLPG
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRV--GNWPGVTVERKSGLVKKNKDLEIQDLPGI- 59
Query: 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
Y+ +P + +K +DY L++ S+ ++DA+ + +L + L + IP+T+
Sbjct: 60 YSMSP---YSPEEKVARDYLLSQRA-DSILNVVDATNLER--NLYLTTQLIETGIPVTIA 113
Query: 243 FTKCD 247
D
Sbjct: 114 LNMID 118
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 33/178 (18%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKL-----ALTSKTPGKTQCINHFRINDSWYLVDLP 179
+ + AL G NVGK+SL N+L K+ +T + + IN L+DLP
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTIN----LIDLP 60
Query: 180 G---YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ 236
G GY++ +K +DY L + V L+ D+ P + + L + + +
Sbjct: 61 GTYSLGYSSID-------EKIARDYLLKGDADL-VILVADSVNPEQSLYL--LLEILEME 110
Query: 237 IPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294
+ L T D D EL + P + TSSVT +G +E+
Sbjct: 111 KKVILAMTAIDEAKKTGMKI--------DRYELQK---HLGIPVVFTSSVTGEGLEEL 157
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC----INHFRINDSWYLVDLPGYGY 183
A+VG+ NVGKS+LLN+L+ K+++ S G T+ + + +D PG
Sbjct: 12 VAIVGKPNVGKSTLLNNLL-GTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 70
Query: 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWLGQNQIPMTLV 242
L + K + +IDA+ +P D E Y +++ P+ +V
Sbjct: 71 PKKSDVLGHSMVEIAKQSLEEADV---ILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
Query: 243 FTKCD 247
K D
Sbjct: 128 INKID 132
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC----INHFRINDSWYLVDLPGYGY 183
A+VG+ NVGKS+LLN+L+ K+++ S G T+ + + +D PG
Sbjct: 13 VAIVGKPNVGKSTLLNNLL-GTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWLGQNQIPMTLV 242
L + K + +IDA+ +P D E Y +++ P+ +V
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEEADV---ILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
Query: 243 FTKCD 247
K D
Sbjct: 129 INKID 133
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRINDS-WYLVDLPG 180
+ + GR N GKSSLLN+L R+ A+ + G T+ + H I+ +++D G
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGXPLHIIDTAG 61
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 30/150 (20%)
Query: 127 EFAL--VGRSNVGKSSLLNSLV------------RRKKLALTSKTPGKTQCINHFRINDS 172
EF L VG S +GKS+L+NSL +K+ T + T I +
Sbjct: 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLR 96
Query: 173 WYLVDLPGYGYAAAPRE--------LRTDWDKFTKDY-FLNRSTLVS-----VFLLIDA- 217
+VD PGYG A R+ + ++++ D LNR ++ F I
Sbjct: 97 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 156
Query: 218 SIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
KP+D+ + + N++ + V K D
Sbjct: 157 GHGLKPLDVAFMKAI-HNKVNIVPVIAKAD 185
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRINDS-WYLVDLPGYGY 183
+ + GR N GKSSLLN+L R+ A+ + G T+ + H I+ +++D G
Sbjct: 9 KVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 67
Query: 184 AA 185
A+
Sbjct: 68 AS 69
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRINDS-WYLVDLPG 180
+ + GR N GKSSLLN+L R+ A+ + G T+ + H I+ +++D G
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG 61
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRIN-DSWYLVDLPGYGY 183
E AL+G NVGKS++ N+L PG T + F N + + +VDLPG Y
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV-Y 61
Query: 184 AAAPRELRTDWDKFTKDYFLNR 205
+ + + +DY +N
Sbjct: 62 SLTANSID---EIIARDYIINE 80
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 30/150 (20%)
Query: 127 EFAL--VGRSNVGKSSLLNSLV------------RRKKLALTSKTPGKTQCINHFRINDS 172
EF L VG S +GKS+L+NSL +K+ T + T I +
Sbjct: 37 EFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLR 96
Query: 173 WYLVDLPGYGYAAAPRE--------LRTDWDKFTKDY-FLNRSTLVS-----VFLLIDA- 217
+VD PGYG A R+ + ++++ D LNR ++ F I
Sbjct: 97 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 156
Query: 218 SIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
KP+D+ + + N++ + V K D
Sbjct: 157 GHGLKPLDVAFXKAI-HNKVNIVPVIAKAD 185
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 36/156 (23%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSK------------TPGKTQCINHFRINDSWYLV 176
A+VG+ NVGKS+LLN+L+ K ++ + T G+ Q + V
Sbjct: 11 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIV----------FV 60
Query: 177 DLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-- 234
D PG P + ++ ++ + + + +V ++D P P D A L
Sbjct: 61 DTPGL---HKPMDALGEF--MDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLV 115
Query: 235 NQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELI 270
++P+ LV K D PEE + + EL+
Sbjct: 116 GKVPILLVGNKLD-------AAKYPEEAMKAYHELL 144
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRIN-DSWYLVDLPGYGY 183
E AL+G NVGKS++ N+L PG T + F N + + +VDLPG Y
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV-Y 61
Query: 184 AAAPRELRTDWDKFTKDYFLNR 205
+ + + +DY +N
Sbjct: 62 SLTANSID---EIIARDYIINE 80
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRIN-DSWYLVDLPGYGY 183
E AL+G NVGKS++ N+L PG T + F N + + +VDLPG Y
Sbjct: 9 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV-Y 65
Query: 184 AAAPRELRTDWDKFTKDYFLNR 205
+ + + +DY +N
Sbjct: 66 SLTANSID---EIIARDYIINE 84
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 46/189 (24%)
Query: 121 PSDGLPEFALV-GRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY----- 174
P G + +V GR NVGKSS +N+LV + +++ S G T D Y
Sbjct: 29 PDAGFRRYIVVAGRRNVGKSSFMNALV-GQNVSIVSDYAGTT--------TDPVYKSMEL 79
Query: 175 -------LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE 227
LVD PG LR +K + ++ +L+ S P P + +
Sbjct: 80 HPIGPVTLVDTPGLDDVGELGRLRV--EKARRVFY-----RADCGILVTDSAPT-PYEDD 131
Query: 228 YASWLGQNQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQT--APPWIMTSS 285
+ + +IP +V K D L + E ++G +++ ++ S+
Sbjct: 132 VVNLFKEMEIPFVVVVNKIDV--------------LGEKAEELKGLYESRYEAKVLLVSA 177
Query: 286 VTNQGRDEI 294
+ +G D+I
Sbjct: 178 LQKKGFDDI 186
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRINDSWYLVDLPGYG 182
+ E AL+G N GK+SL N + + PG T + + N + DLPG
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRV--GNWPGVTVERKSGLVKKNKDLEIQDLPGI- 59
Query: 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
Y+ +P K +DY L++ S+ ++DA+ + +L + L + IP+T+
Sbjct: 60 YSMSPYSPEA---KVARDYLLSQRA-DSILNVVDATNLER--NLYLTTQLIETGIPVTIA 113
Query: 243 FTKCD 247
D
Sbjct: 114 LNMID 118
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 33/178 (18%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKL-----ALTSKTPGKTQCINHFRINDSWYLVDLP 179
+ + AL G NVGK+SL N+L K+ +T + + IN L+DLP
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTIN----LIDLP 60
Query: 180 G---YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ 236
G GY++ +K +DY L + V L+ D+ P + + L + +
Sbjct: 61 GTYSLGYSSID-------EKIARDYLLKGDADL-VILVADSVNPEQSLYLLLEILEMEKK 112
Query: 237 IPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294
+ L T D D EL + P + TSSVT +G +E+
Sbjct: 113 V--ILAMTAIDEAKKTGMKI--------DRYELQK---HLGIPVVFTSSVTGEGLEEL 157
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYA 184
+ E AL+G N GK+SL N + + + + N + DLPG Y+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKNKDLEIQDLPGI-YS 61
Query: 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFT 244
+P + +K +DY L++ S+ ++DA+ + +L + L + IP+T+
Sbjct: 62 MSP---YSPEEKVARDYLLSQRA-DSILNVVDATNLER--NLYLTTQLIETGIPVTIALN 115
Query: 245 KCD 247
D
Sbjct: 116 MID 118
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI 164
+VG+ NVGKS+LLN L+ + A+ + PG T+ +
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDV 281
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 127 EFAL--VGRSNVGKSSLLNSLV------------RRKKLALTSKTPGKTQCINHFRINDS 172
EF L VG S +GKS+L+NSL +K+ T + T I +
Sbjct: 5 EFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKLR 64
Query: 173 WYLVDLPGYGYAAAPRE 189
+VD PGYG A R+
Sbjct: 65 LTVVDTPGYGDAINCRD 81
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRINDSWYLVDLPGYG 182
+ E AL+G N GK+SL N + + PG + + + N + DLPG
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRV--GNWPGVSVERKSGLVKKNKDLEIQDLPGI- 59
Query: 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
Y+ +P + +K +DY L++ S+ ++DA+ + +L + L + IP+T+
Sbjct: 60 YSMSP---YSPEEKVARDYLLSQRA-DSILNVVDATNLER--NLYLTTQLIETGIPVTIA 113
Query: 243 FTKCD 247
D
Sbjct: 114 LNMID 118
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRIN-DSWYLVDLPGYGY 183
E AL+G NVGKS++ N+L PG T + F N + + +VDLPG Y
Sbjct: 6 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV-Y 62
Query: 184 AAAPRELRTDWDKFTKDYFLNR 205
+ + + +DY +N
Sbjct: 63 SLTANSID---EIIARDYIINE 81
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 96 LSKYARDAQVAQAEFVKSSVRTEDCPSDGLPEF-----ALVGRSNVGKSSLLNSL 145
+ YA D + + +S + +D +D +P F G+S VGKSSLLN++
Sbjct: 139 IQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI 193
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 30/150 (20%)
Query: 127 EFAL--VGRSNVGKSSLLNSLV------------RRKKLALTSKTPGKTQCINHFRINDS 172
EF L VG S +GKS+L+NSL +K+ T + T I +
Sbjct: 18 EFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLR 77
Query: 173 WYLVDLPGYGYAAAPRE--------LRTDWDKFTKDY-FLNRSTLVS-----VFLLIDA- 217
+VD PGYG A R+ + ++++ D LNR ++ F I
Sbjct: 78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 137
Query: 218 SIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
KP+D+ + + N++ + V K D
Sbjct: 138 GHGLKPLDVAFXKAI-HNKVNIVPVIAKAD 166
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 125 LPEFALVGRSNVGKSSLLNSL--VRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
L ALVG NVGK+++ N+L +R+ T K + I +R + +VDLPG
Sbjct: 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR-EKEFLVVDLPG 59
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKL-----ALTSKTPGKTQCINHFRINDSWYLVDLPG--- 180
AL G NVGK+SL N+L K+ +T + + IN L+DLPG
Sbjct: 9 ALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTIN----LIDLPGTYS 64
Query: 181 YGYAAAPRELRTDW 194
GY++ ++ D+
Sbjct: 65 LGYSSIDEKIARDY 78
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRINDSWYLVDLPGYG 182
+ E AL+G GK+SL N + + PG T + + N + DLPG
Sbjct: 3 MTEIALIGNPASGKTSLFNLITGHNQRV--GNWPGVTVERKSGLVKKNKDLEIQDLPGI- 59
Query: 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
Y+ +P + +K +DY L++ S+ ++DA+ + +L + L + IP+T+
Sbjct: 60 YSMSP---YSPEEKVARDYLLSQRA-DSILNVVDATNLER--NLYLTTQLIETGIPVTIA 113
Query: 243 FTKCD 247
D
Sbjct: 114 LNMID 118
>pdb|2CSE|1 Chain 1, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1267
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 162 QCINHFRINDSWYLVDLP---GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFL 213
+C N ++ +Y+ LP AAPRE+R + + DY + L S L
Sbjct: 935 RCFNEIKLYQGYYMAQLPRNPTKSGRAAPREVREQFTQALSDYLMQNPELKSRVL 989
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 124 GLPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTPGKTQCINHFRINDSWYLVDL 178
G + +VG +NVGKS+ +N ++ + + TS PG T + +++ L D
Sbjct: 159 GGKDVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDT 218
Query: 179 PG 180
PG
Sbjct: 219 PG 220
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 130 LVGRSNVGKSSLLNSLV------------RRKKLALTSKTPGKTQCINHFRINDSWYLVD 177
+VG+S +GKS+L+N+L R +K+ T + I + ++D
Sbjct: 7 VVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVID 66
Query: 178 LPGYG--------YAAAPRELRTDWDKFTKDYF-LNRSTLV-------SVFLLIDASIPA 221
PG+G + + + ++KF K+ + R + ++ +
Sbjct: 67 TPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSL 126
Query: 222 KPIDLEYASWLGQ--NQIPM 239
+P+DLE+ L + N IP+
Sbjct: 127 RPLDLEFMKHLSKVVNIIPV 146
>pdb|3EL6|A Chain A, Crystal Structure Of The Erythromycin Dehydratase
Length = 313
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 176 VDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK 222
VD+PG+G A L TD + ++ + TLV +L+D ++ A
Sbjct: 44 VDVPGHGGAVFTGRLSTDEQPWLAEHVVGGRTLVPGSVLVDLALAAG 90
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH-------FRINDSWYLVDLPGY 181
+ G S VGKSSLLN++ KL + S+ K Q H + + Y+VD PG+
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRV-SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231
Query: 182 GYAA----APRELRTDWDKF 197
P EL+ + +F
Sbjct: 232 ANLEINDIEPEELKHYFKEF 251
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 123 DGLPEFALVGRSNVGKSSLLNSLV 146
D LP A+VG + GKSS+L S+V
Sbjct: 32 DSLPAIAVVGGQSSGKSSVLESIV 55
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 123 DGLP--EFALVGR-------SNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
DGL E AL GR S VGKSSLLN+L+ +K LT+ + H
Sbjct: 196 DGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQKEILTNDVSDNSGLGQH 248
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKL----ALTSKTPGKTQCIN 165
LP+ A+VG + GKSS+L + V R L + ++ P Q +N
Sbjct: 28 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 72
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKL----ALTSKTPGKTQCIN 165
LP+ A+VG + GKSS+L + V R L + ++ P Q +N
Sbjct: 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKL----ALTSKTPGKTQCIN 165
LP+ A+VG + GKSS+L + V R L + ++ P Q +N
Sbjct: 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 70
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKL----ALTSKTPGKTQCIN 165
LP+ A+VG + GKSS+L + V R L + ++ P Q +N
Sbjct: 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 95
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 130 LVGRSNVGKSSLLNSLVR----RKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
+VG +NVGKS+ +N ++ + + TS PG T + + L D PG
Sbjct: 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPG 221
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKL----ALTSKTPGKTQCIN 165
LP+ A+VG + GKSS+L + V R L + ++ P Q +N
Sbjct: 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLA 152
+VG NVGKS+L N+L R LA
Sbjct: 5 GIVGLPNVGKSTLFNALTRANALA 28
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLA 152
+VG NVGKS+L N+L R LA
Sbjct: 5 GIVGLPNVGKSTLFNALTRANALA 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,579,442
Number of Sequences: 62578
Number of extensions: 322169
Number of successful extensions: 1054
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 62
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)