Query 021750
Match_columns 308
No_of_seqs 445 out of 2549
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12297 obgE GTPase CgtA; Rev 100.0 1.5E-31 3.3E-36 251.2 20.8 213 69-305 87-329 (424)
2 PRK12299 obgE GTPase CgtA; Rev 100.0 1.9E-31 4.1E-36 244.7 20.3 217 69-305 87-330 (335)
3 COG0536 Obg Predicted GTPase [ 100.0 2.8E-31 6.1E-36 235.5 19.6 219 69-306 88-336 (369)
4 PRK12298 obgE GTPase CgtA; Rev 100.0 8.3E-31 1.8E-35 244.9 20.0 217 69-304 88-334 (390)
5 PRK12296 obgE GTPase CgtA; Rev 100.0 8.5E-31 1.8E-35 249.1 19.2 217 69-306 89-343 (500)
6 COG0218 Predicted GTPase [Gene 100.0 3.3E-30 7.3E-35 214.8 19.0 193 107-304 6-198 (200)
7 TIGR02729 Obg_CgtA Obg family 100.0 3.9E-30 8.4E-35 235.8 17.3 216 66-302 82-328 (329)
8 COG1160 Predicted GTPases [Gen 100.0 1.5E-29 3.2E-34 233.3 21.1 243 55-307 70-355 (444)
9 KOG1489 Predicted GTP-binding 99.9 4.1E-27 8.8E-32 206.6 16.2 212 68-301 124-365 (366)
10 TIGR03598 GTPase_YsxC ribosome 99.9 3.6E-26 7.8E-31 192.7 17.1 178 109-292 2-179 (179)
11 KOG2486 Predicted GTPase [Gene 99.9 8.3E-27 1.8E-31 201.4 12.2 272 35-306 39-319 (320)
12 PRK00454 engB GTP-binding prot 99.9 2.9E-25 6.2E-30 189.3 20.8 191 106-304 5-195 (196)
13 KOG0084 GTPase Rab1/YPT1, smal 99.9 1.5E-24 3.3E-29 178.6 14.0 159 123-306 7-175 (205)
14 PF02421 FeoB_N: Ferrous iron 99.9 2.2E-24 4.8E-29 176.1 13.6 153 126-298 1-156 (156)
15 COG1159 Era GTPase [General fu 99.9 1.8E-23 4E-28 183.6 17.7 162 127-303 8-172 (298)
16 TIGR03594 GTPase_EngA ribosome 99.9 1.7E-22 3.6E-27 192.8 23.9 173 123-306 170-347 (429)
17 PRK04213 GTP-binding protein; 99.9 8.9E-23 1.9E-27 175.0 18.9 172 123-305 7-194 (201)
18 cd04121 Rab40 Rab40 subfamily. 99.9 5.2E-23 1.1E-27 174.9 17.2 156 124-304 5-168 (189)
19 PRK03003 GTP-binding protein D 99.9 3.3E-22 7.1E-27 192.6 22.8 172 124-307 210-386 (472)
20 cd04120 Rab12 Rab12 subfamily. 99.9 1.2E-22 2.7E-27 174.3 17.7 156 127-304 2-164 (202)
21 KOG0078 GTP-binding protein SE 99.9 1.4E-22 2.9E-27 169.3 16.1 161 121-304 8-175 (207)
22 cd04122 Rab14 Rab14 subfamily. 99.9 2.1E-22 4.6E-27 167.3 17.0 152 126-302 3-163 (166)
23 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 2.8E-22 6.1E-27 167.9 17.7 156 126-305 3-166 (172)
24 COG1160 Predicted GTPases [Gen 99.9 8.3E-23 1.8E-27 188.7 15.7 158 126-302 4-164 (444)
25 PRK00093 GTP-binding protein D 99.9 1.5E-21 3.3E-26 186.5 24.9 171 124-306 172-347 (435)
26 cd01876 YihA_EngB The YihA (En 99.9 5.2E-22 1.1E-26 163.8 18.9 169 127-301 1-169 (170)
27 cd04175 Rap1 Rap1 subgroup. T 99.9 3E-22 6.6E-27 165.8 16.7 154 126-303 2-163 (164)
28 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 3.3E-22 7.1E-27 171.7 17.3 158 126-305 1-170 (201)
29 cd01865 Rab3 Rab3 subfamily. 99.9 3.2E-22 7E-27 166.1 16.7 153 126-303 2-163 (165)
30 KOG0092 GTPase Rab5/YPT51 and 99.9 3.7E-23 8E-28 169.8 10.6 156 124-304 4-168 (200)
31 cd01867 Rab8_Rab10_Rab13_like 99.9 5.6E-22 1.2E-26 165.0 17.7 154 125-303 3-165 (167)
32 cd04138 H_N_K_Ras_like H-Ras/N 99.9 5.8E-22 1.2E-26 163.0 17.4 152 126-302 2-161 (162)
33 cd04119 RJL RJL (RabJ-Like) su 99.9 4.4E-22 9.5E-27 164.7 16.8 154 126-302 1-166 (168)
34 KOG0098 GTPase Rab2, small G p 99.9 1.9E-22 4E-27 164.5 13.9 155 123-302 4-167 (216)
35 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 4.8E-22 1.1E-26 164.9 16.7 153 126-303 3-164 (166)
36 cd04136 Rap_like Rap-like subf 99.9 3.5E-22 7.7E-27 164.8 15.6 153 126-302 2-162 (163)
37 TIGR00436 era GTP-binding prot 99.9 3.5E-22 7.6E-27 179.2 16.7 160 127-303 2-164 (270)
38 cd01868 Rab11_like Rab11-like. 99.9 6.2E-22 1.3E-26 164.0 16.4 153 125-302 3-164 (165)
39 COG0486 ThdF Predicted GTPase 99.9 4.3E-22 9.3E-27 184.5 16.9 157 127-305 219-378 (454)
40 cd04127 Rab27A Rab27a subfamil 99.9 7.5E-22 1.6E-26 166.0 17.0 154 125-303 4-177 (180)
41 PRK09518 bifunctional cytidyla 99.9 3E-21 6.4E-26 194.3 24.0 172 124-307 449-625 (712)
42 smart00173 RAS Ras subfamily o 99.9 8.1E-22 1.8E-26 163.1 16.4 155 126-304 1-163 (164)
43 cd01864 Rab19 Rab19 subfamily. 99.9 1E-21 2.2E-26 162.9 16.4 155 125-301 3-164 (165)
44 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.6E-21 3.4E-26 161.1 17.5 153 126-302 3-163 (164)
45 cd04117 Rab15 Rab15 subfamily. 99.9 9.1E-22 2E-26 162.9 15.9 151 126-301 1-160 (161)
46 cd01866 Rab2 Rab2 subfamily. 99.9 1.6E-21 3.4E-26 162.5 17.2 155 124-303 3-166 (168)
47 cd04140 ARHI_like ARHI subfami 99.9 1.3E-21 2.9E-26 162.4 16.5 152 126-301 2-163 (165)
48 PRK15494 era GTPase Era; Provi 99.9 1.7E-21 3.8E-26 179.8 19.0 162 125-303 52-216 (339)
49 cd04124 RabL2 RabL2 subfamily. 99.9 1.1E-21 2.3E-26 162.4 15.7 154 126-305 1-160 (161)
50 cd04144 Ras2 Ras2 subfamily. 99.9 1.4E-21 2.9E-26 166.4 16.7 156 127-306 1-166 (190)
51 cd04142 RRP22 RRP22 subfamily. 99.9 1.7E-21 3.6E-26 167.0 17.3 165 126-304 1-175 (198)
52 cd04110 Rab35 Rab35 subfamily. 99.9 1.9E-21 4.2E-26 166.7 17.5 156 124-304 5-168 (199)
53 PTZ00369 Ras-like protein; Pro 99.9 2.4E-21 5.2E-26 164.7 17.8 156 125-304 5-168 (189)
54 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 6E-22 1.3E-26 162.8 13.2 153 126-303 23-185 (221)
55 cd04171 SelB SelB subfamily. 99.9 2E-21 4.4E-26 160.2 16.6 156 127-300 2-163 (164)
56 PLN03071 GTP-binding nuclear p 99.9 1.3E-21 2.9E-26 170.2 16.2 156 122-304 10-173 (219)
57 cd04118 Rab24 Rab24 subfamily. 99.9 2.4E-21 5.3E-26 164.9 17.3 161 126-305 1-168 (193)
58 cd04176 Rap2 Rap2 subgroup. T 99.9 2E-21 4.4E-26 160.6 15.9 153 126-302 2-162 (163)
59 cd04106 Rab23_lke Rab23-like s 99.9 1.8E-21 4E-26 160.5 15.6 151 126-301 1-161 (162)
60 cd04109 Rab28 Rab28 subfamily. 99.9 2.2E-21 4.7E-26 168.4 16.6 156 126-304 1-167 (215)
61 cd04113 Rab4 Rab4 subfamily. 99.9 2.3E-21 4.9E-26 160.0 15.8 153 126-301 1-160 (161)
62 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 3.9E-21 8.5E-26 160.7 16.8 155 127-304 2-166 (170)
63 cd04111 Rab39 Rab39 subfamily. 99.9 4.2E-21 9E-26 166.2 17.5 156 125-305 2-168 (211)
64 cd01861 Rab6 Rab6 subfamily. 99.9 3.7E-21 8E-26 158.5 16.3 153 126-301 1-160 (161)
65 KOG0080 GTPase Rab18, small G 99.9 5.9E-22 1.3E-26 157.6 10.8 155 124-303 10-174 (209)
66 cd01897 NOG NOG1 is a nucleola 99.9 4.4E-21 9.5E-26 159.3 16.7 159 126-302 1-167 (168)
67 cd01895 EngA2 EngA2 subfamily. 99.9 1.2E-20 2.6E-25 156.5 19.0 167 125-301 2-173 (174)
68 cd04132 Rho4_like Rho4-like su 99.9 3.8E-21 8.1E-26 162.8 16.2 161 126-306 1-170 (187)
69 cd04149 Arf6 Arf6 subfamily. 99.9 4.1E-21 8.8E-26 160.3 16.1 153 125-300 9-167 (168)
70 cd04125 RabA_like RabA-like su 99.9 5.4E-21 1.2E-25 162.2 17.0 155 126-305 1-164 (188)
71 cd00877 Ran Ran (Ras-related n 99.9 3E-21 6.6E-26 160.7 15.2 152 126-304 1-160 (166)
72 cd04133 Rop_like Rop subfamily 99.9 3E-21 6.6E-26 162.3 15.3 158 126-302 2-172 (176)
73 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 4.1E-21 9E-26 162.3 16.0 159 124-301 4-178 (182)
74 cd04112 Rab26 Rab26 subfamily. 99.9 6.4E-21 1.4E-25 162.3 17.3 157 126-305 1-165 (191)
75 cd01889 SelB_euk SelB subfamil 99.9 5.2E-21 1.1E-25 163.0 16.7 159 126-302 1-185 (192)
76 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8.7E-21 1.9E-25 157.2 17.4 157 126-303 1-166 (168)
77 smart00175 RAB Rab subfamily o 99.9 6.3E-21 1.4E-25 157.3 16.4 153 126-303 1-162 (164)
78 PLN00223 ADP-ribosylation fact 99.9 8.4E-21 1.8E-25 160.4 17.4 157 123-304 15-179 (181)
79 cd01863 Rab18 Rab18 subfamily. 99.9 6.3E-21 1.4E-25 157.2 16.2 152 126-301 1-160 (161)
80 cd01898 Obg Obg subfamily. Th 99.9 2.3E-21 4.9E-26 161.2 13.6 157 127-301 2-169 (170)
81 PLN03110 Rab GTPase; Provision 99.9 8.9E-21 1.9E-25 164.7 17.7 156 124-304 11-175 (216)
82 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 5.6E-21 1.2E-25 161.6 16.0 160 126-306 4-173 (183)
83 cd04116 Rab9 Rab9 subfamily. 99.9 5.5E-21 1.2E-25 159.2 15.7 155 124-301 4-169 (170)
84 cd01862 Rab7 Rab7 subfamily. 99.9 1.1E-20 2.3E-25 157.3 17.3 158 126-305 1-169 (172)
85 cd04158 ARD1 ARD1 subfamily. 99.9 4.7E-21 1E-25 159.9 15.0 156 127-304 1-162 (169)
86 cd04115 Rab33B_Rab33A Rab33B/R 99.9 9.8E-21 2.1E-25 158.0 16.6 154 125-303 2-169 (170)
87 cd04150 Arf1_5_like Arf1-Arf5- 99.9 4.4E-21 9.5E-26 158.6 14.2 149 127-300 2-158 (159)
88 PLN03118 Rab family protein; P 99.9 1.6E-20 3.5E-25 162.4 18.4 157 124-304 13-178 (211)
89 cd04154 Arl2 Arl2 subfamily. 99.9 8.7E-21 1.9E-25 158.8 15.9 156 122-300 11-172 (173)
90 cd01860 Rab5_related Rab5-rela 99.9 1.2E-20 2.6E-25 155.8 16.5 154 126-302 2-162 (163)
91 cd04131 Rnd Rnd subfamily. Th 99.9 8E-21 1.7E-25 160.1 15.6 157 126-301 2-174 (178)
92 cd04157 Arl6 Arl6 subfamily. 99.9 8.7E-21 1.9E-25 156.3 15.4 150 127-300 1-161 (162)
93 cd01874 Cdc42 Cdc42 subfamily. 99.9 6.9E-21 1.5E-25 160.0 15.0 157 126-301 2-173 (175)
94 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.3E-20 2.7E-25 159.4 16.4 158 126-303 1-166 (182)
95 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.5E-20 3.1E-25 164.5 17.1 160 125-304 13-189 (232)
96 cd01875 RhoG RhoG subfamily. 99.9 7.3E-21 1.6E-25 162.1 14.8 159 126-303 4-177 (191)
97 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.2E-21 1.1E-25 158.6 13.5 155 127-300 1-166 (167)
98 smart00177 ARF ARF-like small 99.9 1.7E-20 3.7E-25 157.5 16.7 153 125-302 13-173 (175)
99 PRK00089 era GTPase Era; Revie 99.9 2.4E-20 5.2E-25 169.2 18.8 161 127-302 7-170 (292)
100 cd01871 Rac1_like Rac1-like su 99.9 1E-20 2.2E-25 158.8 14.8 157 126-301 2-173 (174)
101 KOG0394 Ras-related GTPase [Ge 99.9 3.2E-21 7E-26 157.0 11.2 162 122-303 6-178 (210)
102 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.1E-20 4.5E-25 154.6 16.2 152 126-302 1-163 (164)
103 cd04177 RSR1 RSR1 subgroup. R 99.9 2.5E-20 5.3E-25 155.2 16.7 154 126-302 2-163 (168)
104 cd04139 RalA_RalB RalA/RalB su 99.9 2.8E-20 6.2E-25 153.3 16.8 154 126-303 1-162 (164)
105 PRK03003 GTP-binding protein D 99.9 1.9E-20 4.1E-25 180.4 18.1 161 124-304 37-200 (472)
106 cd04114 Rab30 Rab30 subfamily. 99.9 2.8E-20 6.1E-25 154.6 16.8 156 124-302 6-168 (169)
107 PTZ00133 ADP-ribosylation fact 99.9 2.9E-20 6.4E-25 157.2 17.1 156 125-305 17-180 (182)
108 cd04126 Rab20 Rab20 subfamily. 99.9 3.1E-20 6.7E-25 161.3 17.6 162 126-303 1-190 (220)
109 cd01892 Miro2 Miro2 subfamily. 99.9 1.3E-20 2.8E-25 157.3 14.7 158 124-303 3-166 (169)
110 KOG0079 GTP-binding protein H- 99.9 4.7E-21 1E-25 150.5 11.2 156 125-305 8-171 (198)
111 cd01890 LepA LepA subfamily. 99.9 4.2E-20 9.1E-25 155.1 17.8 154 127-302 2-176 (179)
112 cd04123 Rab21 Rab21 subfamily. 99.9 3E-20 6.5E-25 152.7 16.6 154 126-302 1-161 (162)
113 cd04156 ARLTS1 ARLTS1 subfamil 99.9 8.7E-21 1.9E-25 156.2 13.3 149 127-300 1-159 (160)
114 PLN03108 Rab family protein; P 99.9 4.7E-20 1E-24 159.4 18.3 155 124-303 5-168 (210)
115 cd01894 EngA1 EngA1 subfamily. 99.9 1.8E-20 3.8E-25 153.3 14.9 153 129-301 1-156 (157)
116 cd01879 FeoB Ferrous iron tran 99.9 3.1E-20 6.8E-25 152.2 16.3 154 130-303 1-157 (158)
117 cd04151 Arl1 Arl1 subfamily. 99.9 2E-20 4.3E-25 154.1 14.8 149 127-300 1-157 (158)
118 cd04134 Rho3 Rho3 subfamily. 99.9 7.8E-21 1.7E-25 161.6 12.7 159 127-304 2-175 (189)
119 KOG0087 GTPase Rab11/YPT3, sma 99.9 5.3E-21 1.1E-25 159.3 11.1 156 122-302 11-175 (222)
120 cd00154 Rab Rab family. Rab G 99.8 4E-20 8.8E-25 150.7 15.3 152 126-300 1-159 (159)
121 cd04163 Era Era subfamily. Er 99.8 1.2E-19 2.5E-24 149.2 17.7 161 126-301 4-167 (168)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.8 4.4E-20 9.6E-25 151.8 15.2 149 127-300 1-157 (158)
123 TIGR03156 GTP_HflX GTP-binding 99.8 4.4E-20 9.6E-25 170.9 16.9 156 123-301 187-350 (351)
124 TIGR02528 EutP ethanolamine ut 99.8 3.4E-20 7.4E-25 149.9 14.2 140 127-299 2-141 (142)
125 cd04146 RERG_RasL11_like RERG/ 99.8 3.1E-20 6.7E-25 154.0 14.2 154 127-303 1-164 (165)
126 cd01878 HflX HflX subfamily. 99.8 8E-20 1.7E-24 157.0 17.2 158 122-301 38-203 (204)
127 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1E-19 2.2E-24 148.6 17.0 152 126-302 2-156 (157)
128 cd00881 GTP_translation_factor 99.8 9.5E-20 2.1E-24 153.6 17.2 158 127-302 1-186 (189)
129 cd04143 Rhes_like Rhes_like su 99.8 5.1E-20 1.1E-24 162.9 16.1 154 126-302 1-170 (247)
130 smart00176 RAN Ran (Ras-relate 99.8 4.5E-20 9.7E-25 158.2 15.1 147 131-304 1-155 (200)
131 smart00178 SAR Sar1p-like memb 99.8 5.7E-20 1.2E-24 155.6 15.5 152 125-301 17-183 (184)
132 cd04148 RGK RGK subfamily. Th 99.8 8.7E-20 1.9E-24 159.0 17.0 155 126-304 1-164 (221)
133 cd01893 Miro1 Miro1 subfamily. 99.8 8.3E-20 1.8E-24 151.8 16.0 154 127-302 2-163 (166)
134 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 8.1E-20 1.8E-24 153.2 15.9 151 125-300 15-173 (174)
135 KOG0091 GTPase Rab39, small G 99.8 2.1E-20 4.4E-25 149.3 11.0 156 125-305 8-175 (213)
136 TIGR03594 GTPase_EngA ribosome 99.8 6.5E-20 1.4E-24 175.0 16.7 157 127-303 1-160 (429)
137 PF00071 Ras: Ras family; Int 99.8 9.7E-20 2.1E-24 150.3 15.2 152 127-303 1-161 (162)
138 smart00174 RHO Rho (Ras homolo 99.8 4.6E-20 9.9E-25 154.1 13.4 156 128-302 1-171 (174)
139 cd04137 RheB Rheb (Ras Homolog 99.8 1.4E-19 3E-24 152.2 16.3 157 126-306 2-166 (180)
140 cd00879 Sar1 Sar1 subfamily. 99.8 8.5E-20 1.8E-24 154.9 15.0 155 125-301 19-189 (190)
141 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.2E-19 2.7E-24 157.7 16.2 157 126-302 2-175 (222)
142 cd04135 Tc10 TC10 subfamily. 99.8 7.5E-20 1.6E-24 152.8 13.4 158 126-302 1-173 (174)
143 cd00876 Ras Ras family. The R 99.8 2E-19 4.3E-24 147.5 15.7 151 127-301 1-159 (160)
144 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.1E-19 2.4E-24 152.0 14.3 155 126-299 1-170 (173)
145 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.3E-19 2.8E-24 151.0 14.5 153 127-300 1-166 (167)
146 PRK15467 ethanolamine utilizat 99.8 2.6E-19 5.7E-24 147.9 16.2 146 127-304 3-148 (158)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.8 3.3E-19 7.1E-24 169.7 19.1 156 125-305 203-362 (442)
148 KOG0095 GTPase Rab30, small G 99.8 1E-19 2.2E-24 143.2 12.8 154 124-302 6-168 (213)
149 PRK00093 GTP-binding protein D 99.8 1.9E-19 4E-24 172.2 17.4 156 126-301 2-160 (435)
150 PF00009 GTP_EFTU: Elongation 99.8 1.3E-19 2.8E-24 154.0 14.2 159 125-302 3-186 (188)
151 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.6E-19 3.4E-24 150.1 14.0 149 128-300 2-163 (164)
152 cd04147 Ras_dva Ras-dva subfam 99.8 3.6E-19 7.8E-24 152.4 16.5 155 127-303 1-163 (198)
153 PRK05291 trmE tRNA modificatio 99.8 2.9E-19 6.3E-24 170.8 17.0 153 126-304 216-371 (449)
154 cd04159 Arl10_like Arl10-like 99.8 2.8E-19 6.2E-24 145.8 14.7 150 127-300 1-158 (159)
155 cd04103 Centaurin_gamma Centau 99.8 3.1E-19 6.6E-24 147.5 14.9 148 127-301 2-157 (158)
156 PRK09518 bifunctional cytidyla 99.8 4.3E-19 9.4E-24 178.6 19.0 162 123-304 273-437 (712)
157 cd01891 TypA_BipA TypA (tyrosi 99.8 4.7E-19 1E-23 151.2 16.2 150 126-294 3-173 (194)
158 KOG0086 GTPase Rab4, small G p 99.8 1.6E-19 3.4E-24 142.7 12.1 155 123-302 7-170 (214)
159 cd01870 RhoA_like RhoA-like su 99.8 2.8E-19 6.1E-24 149.5 14.5 158 126-302 2-174 (175)
160 cd01873 RhoBTB RhoBTB subfamil 99.8 3.5E-19 7.6E-24 152.2 14.8 155 126-301 3-194 (195)
161 cd04155 Arl3 Arl3 subfamily. 99.8 5.3E-19 1.2E-23 147.5 15.2 152 124-300 13-172 (173)
162 cd00157 Rho Rho (Ras homology) 99.8 2.3E-19 5.1E-24 149.1 12.9 156 126-300 1-170 (171)
163 KOG0093 GTPase Rab3, small G p 99.8 4.8E-19 1E-23 139.1 13.7 158 123-305 19-185 (193)
164 PRK11058 GTPase HflX; Provisio 99.8 1.5E-18 3.3E-23 164.3 18.4 159 123-303 195-362 (426)
165 cd01881 Obg_like The Obg-like 99.8 5.1E-19 1.1E-23 147.6 12.8 154 130-301 1-175 (176)
166 PF00025 Arf: ADP-ribosylation 99.8 3.3E-19 7.2E-24 149.8 11.5 155 123-302 12-175 (175)
167 cd01888 eIF2_gamma eIF2-gamma 99.8 1.6E-18 3.6E-23 149.0 15.8 158 127-302 2-198 (203)
168 PRK09554 feoB ferrous iron tra 99.8 1.7E-18 3.7E-23 174.2 18.1 161 126-302 4-167 (772)
169 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.7E-18 7.9E-23 145.8 15.6 149 126-291 3-171 (195)
170 cd04165 GTPBP1_like GTPBP1-lik 99.8 4.6E-18 1E-22 148.2 15.7 157 127-301 1-221 (224)
171 TIGR00475 selB selenocysteine- 99.8 5.4E-18 1.2E-22 166.5 18.1 160 127-304 2-167 (581)
172 TIGR00487 IF-2 translation ini 99.8 1E-17 2.2E-22 164.2 19.2 158 122-301 84-248 (587)
173 cd00880 Era_like Era (E. coli 99.8 1.3E-17 2.9E-22 135.3 16.6 156 130-301 1-162 (163)
174 cd04129 Rho2 Rho2 subfamily. 99.8 5E-18 1.1E-22 144.0 14.3 159 126-303 2-173 (187)
175 KOG0073 GTP-binding ADP-ribosy 99.8 1.9E-17 4E-22 132.6 16.4 159 124-304 15-179 (185)
176 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.6E-18 5.7E-23 148.3 12.5 151 127-294 1-185 (208)
177 TIGR00231 small_GTP small GTP- 99.8 1.2E-17 2.6E-22 135.5 15.3 147 126-299 2-160 (161)
178 PTZ00132 GTP-binding nuclear p 99.8 1.8E-17 3.9E-22 143.7 17.3 156 122-304 6-169 (215)
179 cd04104 p47_IIGP_like p47 (47- 99.8 2.1E-17 4.6E-22 141.4 17.1 173 126-308 2-189 (197)
180 PRK05306 infB translation init 99.8 1.4E-17 3.1E-22 166.9 18.3 159 122-301 287-450 (787)
181 COG0370 FeoB Fe2+ transport sy 99.8 7.4E-18 1.6E-22 162.6 15.6 158 126-303 4-164 (653)
182 TIGR00437 feoB ferrous iron tr 99.8 9E-18 1.9E-22 165.2 16.6 151 132-302 1-154 (591)
183 KOG0081 GTPase Rab27, small G 99.8 9.9E-19 2.1E-23 139.1 7.1 156 126-306 10-184 (219)
184 KOG0097 GTPase Rab14, small G 99.8 1.5E-17 3.3E-22 129.9 13.2 154 123-301 9-171 (215)
185 KOG1423 Ras-like GTPase ERA [C 99.8 1E-17 2.2E-22 146.9 13.2 177 124-302 71-270 (379)
186 CHL00189 infB translation init 99.8 2.3E-17 5E-22 164.1 17.5 160 122-302 241-409 (742)
187 PRK10512 selenocysteinyl-tRNA- 99.8 3.2E-17 6.9E-22 161.7 17.8 159 127-303 2-166 (614)
188 TIGR01393 lepA GTP-binding pro 99.7 4.5E-17 9.8E-22 160.3 17.8 156 125-302 3-179 (595)
189 KOG1191 Mitochondrial GTPase [ 99.7 1E-17 2.2E-22 155.3 12.2 167 126-304 269-451 (531)
190 TIGR00491 aIF-2 translation in 99.7 4.1E-17 8.9E-22 159.7 17.1 163 125-303 4-216 (590)
191 COG1084 Predicted GTPase [Gene 99.7 5.3E-17 1.2E-21 144.2 16.2 162 123-301 166-334 (346)
192 PF10662 PduV-EutP: Ethanolami 99.7 3.9E-17 8.3E-22 130.8 13.7 142 126-300 2-143 (143)
193 KOG0395 Ras-related GTPase [Ge 99.7 3.6E-17 7.7E-22 139.5 14.3 156 125-304 3-166 (196)
194 KOG0088 GTPase Rab21, small G 99.7 1.8E-18 3.8E-23 137.5 5.3 155 125-304 13-176 (218)
195 PF01926 MMR_HSR1: 50S ribosom 99.7 2.3E-17 5.1E-22 129.0 11.5 113 127-245 1-116 (116)
196 COG2262 HflX GTPases [General 99.7 8.8E-17 1.9E-21 146.9 16.2 162 121-304 188-357 (411)
197 PRK12317 elongation factor 1-a 99.7 3.5E-17 7.7E-22 155.9 13.4 157 123-295 4-197 (425)
198 cd01896 DRG The developmentall 99.7 2.6E-16 5.7E-21 138.1 17.2 151 127-303 2-226 (233)
199 cd04102 RabL3 RabL3 (Rab-like3 99.7 1.7E-16 3.8E-21 136.1 15.4 158 127-305 2-199 (202)
200 COG1163 DRG Predicted GTPase [ 99.7 9.7E-17 2.1E-21 142.1 13.1 158 120-303 58-289 (365)
201 TIGR03680 eif2g_arch translati 99.7 1.3E-16 2.8E-21 151.0 14.6 160 125-302 4-195 (406)
202 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 4.7E-16 1E-20 133.0 16.3 166 127-304 2-185 (196)
203 PRK12736 elongation factor Tu; 99.7 3.4E-16 7.3E-21 147.6 16.5 161 124-302 11-200 (394)
204 KOG0070 GTP-binding ADP-ribosy 99.7 6.8E-17 1.5E-21 132.5 10.1 158 122-304 14-179 (181)
205 cd01883 EF1_alpha Eukaryotic e 99.7 1.1E-16 2.5E-21 139.2 12.2 148 127-292 1-194 (219)
206 PRK04000 translation initiatio 99.7 2.4E-16 5.2E-21 149.2 15.3 160 124-302 8-200 (411)
207 CHL00071 tufA elongation facto 99.7 2.9E-16 6.3E-21 148.8 15.8 151 123-290 10-180 (409)
208 PRK05433 GTP-binding protein L 99.7 5.8E-16 1.3E-20 152.6 17.6 159 123-303 5-184 (600)
209 cd00882 Ras_like_GTPase Ras-li 99.7 5.2E-16 1.1E-20 124.3 14.0 147 130-299 1-156 (157)
210 KOG0075 GTP-binding ADP-ribosy 99.7 1.4E-16 3E-21 125.3 10.1 157 126-306 21-185 (186)
211 PRK12735 elongation factor Tu; 99.7 6.8E-16 1.5E-20 145.6 16.0 161 124-302 11-202 (396)
212 cd04168 TetM_like Tet(M)-like 99.7 2.7E-15 5.8E-20 132.0 17.1 111 127-250 1-130 (237)
213 KOG0083 GTPase Rab26/Rab37, sm 99.7 3.4E-17 7.4E-22 126.7 4.3 152 129-305 1-162 (192)
214 PRK04004 translation initiatio 99.7 3.7E-15 8E-20 146.4 19.3 164 124-303 5-218 (586)
215 PLN03127 Elongation factor Tu; 99.7 2.8E-15 6E-20 143.0 17.5 162 123-302 59-251 (447)
216 PRK00049 elongation factor Tu; 99.7 2.4E-15 5.3E-20 141.8 17.0 161 124-301 11-201 (396)
217 TIGR00485 EF-Tu translation el 99.7 1.4E-15 3E-20 143.6 15.2 150 123-289 10-179 (394)
218 PRK10218 GTP-binding protein; 99.7 3.5E-15 7.7E-20 146.6 18.5 160 124-302 4-194 (607)
219 TIGR01394 TypA_BipA GTP-bindin 99.7 2.6E-15 5.6E-20 147.6 17.3 158 126-302 2-190 (594)
220 KOG4252 GTP-binding protein [S 99.7 9.4E-17 2E-21 130.3 5.7 158 124-306 19-184 (246)
221 KOG0071 GTP-binding ADP-ribosy 99.7 1.7E-15 3.7E-20 118.3 11.7 156 125-303 17-178 (180)
222 TIGR00483 EF-1_alpha translati 99.7 1.9E-15 4.1E-20 144.1 14.5 155 123-293 5-197 (426)
223 COG3596 Predicted GTPase [Gene 99.6 2.6E-15 5.6E-20 130.7 13.3 177 119-303 33-222 (296)
224 TIGR02034 CysN sulfate adenyly 99.6 2.6E-15 5.7E-20 142.1 14.0 152 126-293 1-187 (406)
225 PLN03126 Elongation factor Tu; 99.6 6.1E-15 1.3E-19 141.5 16.4 152 122-290 78-249 (478)
226 PRK09866 hypothetical protein; 99.6 1.6E-14 3.4E-19 139.3 18.7 118 171-300 230-350 (741)
227 PLN00023 GTP-binding protein; 99.6 4E-15 8.7E-20 134.5 13.8 136 120-270 16-187 (334)
228 PRK05506 bifunctional sulfate 99.6 2.3E-15 5.1E-20 150.0 13.1 153 124-293 23-211 (632)
229 cd04105 SR_beta Signal recogni 99.6 1.5E-14 3.2E-19 124.5 16.0 160 126-300 1-202 (203)
230 COG1100 GTPase SAR1 and relate 99.6 2.8E-14 6E-19 123.6 17.2 166 126-304 6-186 (219)
231 PRK05124 cysN sulfate adenylyl 99.6 4.3E-15 9.3E-20 142.9 13.2 152 123-294 25-216 (474)
232 PTZ00327 eukaryotic translatio 99.6 7.5E-15 1.6E-19 140.0 14.2 162 123-302 32-232 (460)
233 cd01886 EF-G Elongation factor 99.6 8.8E-15 1.9E-19 131.0 13.7 140 127-287 1-159 (270)
234 KOG1145 Mitochondrial translat 99.6 4.7E-14 1E-18 132.4 18.5 166 117-303 145-316 (683)
235 cd01850 CDC_Septin CDC/Septin. 99.6 2.7E-14 5.8E-19 128.3 16.4 126 125-251 4-158 (276)
236 cd04167 Snu114p Snu114p subfam 99.6 9.3E-15 2E-19 126.6 13.0 153 127-292 2-192 (213)
237 COG0532 InfB Translation initi 99.6 3.9E-14 8.5E-19 133.5 16.6 160 124-304 4-171 (509)
238 PRK00007 elongation factor G; 99.6 2.6E-14 5.6E-19 143.7 16.5 117 121-250 6-141 (693)
239 cd04170 EF-G_bact Elongation f 99.6 8.1E-15 1.8E-19 131.4 11.5 112 127-251 1-131 (268)
240 KOG0076 GTP-binding ADP-ribosy 99.6 8.4E-15 1.8E-19 118.6 9.8 162 125-305 17-189 (197)
241 TIGR00484 EF-G translation elo 99.6 4E-14 8.8E-19 142.4 16.8 119 120-251 5-142 (689)
242 PTZ00141 elongation factor 1- 99.6 2.9E-14 6.2E-19 136.2 14.8 152 124-293 6-203 (446)
243 COG2229 Predicted GTPase [Gene 99.6 1.2E-13 2.7E-18 113.2 16.2 154 125-301 10-176 (187)
244 PRK00741 prfC peptide chain re 99.6 6.8E-14 1.5E-18 135.9 17.3 114 124-250 9-145 (526)
245 cd01899 Ygr210 Ygr210 subfamil 99.6 2.3E-14 5E-19 130.8 13.1 83 128-219 1-111 (318)
246 PRK12739 elongation factor G; 99.6 5.4E-14 1.2E-18 141.5 16.7 117 122-251 5-140 (691)
247 KOG1490 GTP-binding protein CR 99.6 2.4E-14 5.2E-19 133.0 11.9 168 122-302 165-340 (620)
248 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.1E-13 2.3E-18 121.0 15.4 142 126-289 40-182 (225)
249 cd04169 RF3 RF3 subfamily. Pe 99.6 1E-13 2.2E-18 124.0 15.6 113 126-251 3-138 (267)
250 PTZ00099 rab6; Provisional 99.6 7.6E-14 1.6E-18 117.3 13.2 128 154-304 9-143 (176)
251 PRK13351 elongation factor G; 99.5 1.4E-13 3.1E-18 138.6 17.3 117 122-251 5-140 (687)
252 cd01885 EF2 EF2 (for archaea a 99.5 1.4E-13 3.1E-18 119.7 14.8 110 127-249 2-138 (222)
253 KOG0393 Ras-related small GTPa 99.5 1.3E-14 2.9E-19 121.8 7.4 158 125-302 4-178 (198)
254 KOG0072 GTP-binding ADP-ribosy 99.5 6.3E-15 1.4E-19 115.6 4.6 158 124-305 17-181 (182)
255 PRK09602 translation-associate 99.5 2.2E-13 4.7E-18 128.0 15.5 84 126-218 2-113 (396)
256 TIGR00503 prfC peptide chain r 99.5 3.7E-13 7.9E-18 130.8 16.8 115 123-250 9-146 (527)
257 PF08477 Miro: Miro-like prote 99.5 6.4E-14 1.4E-18 109.6 8.7 108 127-247 1-119 (119)
258 PRK13768 GTPase; Provisional 99.5 3.4E-13 7.4E-18 119.8 12.9 121 172-303 98-247 (253)
259 KOG0462 Elongation factor-type 99.5 2.8E-13 6.1E-18 127.2 12.8 159 121-302 56-234 (650)
260 PLN00043 elongation factor 1-a 99.5 6.2E-13 1.3E-17 127.1 14.6 156 124-293 6-203 (447)
261 cd01853 Toc34_like Toc34-like 99.5 2.6E-12 5.6E-17 113.6 17.5 129 123-253 29-166 (249)
262 PTZ00258 GTP-binding protein; 99.5 2.3E-12 4.9E-17 120.1 16.1 86 124-218 20-126 (390)
263 PF04548 AIG1: AIG1 family; I 99.4 2.6E-12 5.7E-17 111.2 14.5 168 127-305 2-188 (212)
264 COG5256 TEF1 Translation elong 99.4 6.6E-13 1.4E-17 121.6 11.0 152 123-294 5-202 (428)
265 KOG0074 GTP-binding ADP-ribosy 99.4 2.2E-13 4.7E-18 106.7 6.6 154 123-301 15-177 (185)
266 TIGR00993 3a0901s04IAP86 chlor 99.4 1.8E-12 4E-17 125.6 13.8 195 52-251 43-251 (763)
267 KOG3883 Ras family small GTPas 99.4 5.2E-12 1.1E-16 100.3 13.7 156 126-303 10-175 (198)
268 PRK12740 elongation factor G; 99.4 2.6E-12 5.6E-17 129.2 14.9 108 131-251 1-127 (668)
269 COG4917 EutP Ethanolamine util 99.4 3.9E-12 8.5E-17 97.8 11.0 143 126-301 2-144 (148)
270 smart00053 DYNc Dynamin, GTPas 99.4 2.3E-11 5E-16 106.6 16.2 126 124-251 25-207 (240)
271 PRK09601 GTP-binding protein Y 99.4 1.3E-11 2.9E-16 113.7 15.3 84 126-218 3-107 (364)
272 PRK09435 membrane ATPase/prote 99.4 7.6E-12 1.6E-16 114.6 13.5 109 172-305 150-262 (332)
273 KOG1486 GTP-binding protein DR 99.4 4.8E-12 1E-16 108.7 10.8 157 121-303 58-288 (364)
274 COG5257 GCD11 Translation init 99.4 2.4E-12 5.2E-17 114.0 9.2 161 123-303 8-202 (415)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.6E-11 3.5E-16 110.5 14.7 124 123-251 36-168 (313)
276 PRK14845 translation initiatio 99.4 1.5E-11 3.3E-16 126.5 16.2 153 136-303 472-673 (1049)
277 KOG0461 Selenocysteine-specifi 99.4 1.2E-11 2.7E-16 110.5 13.1 159 126-302 8-192 (522)
278 KOG1707 Predicted Ras related/ 99.4 2.8E-12 6E-17 121.5 9.5 156 125-302 9-174 (625)
279 PF09439 SRPRB: Signal recogni 99.4 2E-12 4.3E-17 108.1 7.5 112 126-252 4-128 (181)
280 PF05049 IIGP: Interferon-indu 99.3 4E-12 8.6E-17 117.3 10.1 169 125-306 35-221 (376)
281 COG0481 LepA Membrane GTPase L 99.3 5.4E-12 1.2E-16 117.0 10.5 159 121-302 5-185 (603)
282 KOG1532 GTPase XAB1, interacts 99.3 4.1E-11 8.8E-16 104.3 14.8 124 172-306 117-267 (366)
283 cd01900 YchF YchF subfamily. 99.3 9.1E-12 2E-16 111.2 9.7 82 128-218 1-103 (274)
284 KOG0090 Signal recognition par 99.3 2.7E-11 5.8E-16 101.8 11.6 161 126-301 39-237 (238)
285 TIGR00073 hypB hydrogenase acc 99.3 2.9E-11 6.3E-16 104.3 12.1 80 211-302 127-206 (207)
286 PLN00116 translation elongatio 99.3 3.1E-11 6.7E-16 123.8 14.3 114 123-249 17-163 (843)
287 COG3276 SelB Selenocysteine-sp 99.3 4.6E-11 9.9E-16 110.4 13.8 156 127-303 2-162 (447)
288 PTZ00416 elongation factor 2; 99.3 4.5E-11 9.7E-16 122.4 15.2 113 123-249 17-157 (836)
289 COG2895 CysN GTPases - Sulfate 99.3 2.1E-11 4.6E-16 109.4 11.1 153 124-292 5-192 (431)
290 PRK07560 elongation factor EF- 99.3 3.9E-11 8.5E-16 121.5 14.3 115 123-250 18-153 (731)
291 TIGR02836 spore_IV_A stage IV 99.3 9.4E-11 2E-15 108.3 15.4 151 123-287 15-219 (492)
292 KOG0077 Vesicle coat complex C 99.3 1.8E-11 3.9E-16 98.6 8.5 155 126-302 21-192 (193)
293 COG0012 Predicted GTPase, prob 99.2 1.4E-10 3.1E-15 105.7 13.8 85 126-219 3-109 (372)
294 PF00735 Septin: Septin; Inte 99.2 1.9E-10 4.1E-15 103.5 14.3 137 126-272 5-169 (281)
295 PF03308 ArgK: ArgK protein; 99.2 2.6E-11 5.6E-16 105.7 8.2 152 125-306 29-233 (266)
296 cd01857 HSR1_MMR1 HSR1/MMR1. 99.2 1.3E-10 2.8E-15 94.0 11.3 60 123-183 81-140 (141)
297 KOG0096 GTPase Ran/TC4/GSP1 (n 99.2 1.2E-11 2.7E-16 101.7 4.5 152 124-302 9-168 (216)
298 TIGR00750 lao LAO/AO transport 99.2 3E-10 6.6E-15 103.4 14.2 64 235-303 171-238 (300)
299 COG1217 TypA Predicted membran 99.2 4.8E-10 1E-14 104.0 15.4 160 124-302 4-194 (603)
300 TIGR00490 aEF-2 translation el 99.2 5.7E-11 1.2E-15 120.1 10.3 114 124-250 18-152 (720)
301 KOG4423 GTP-binding protein-li 99.2 7.6E-13 1.6E-17 108.4 -2.7 159 122-303 22-194 (229)
302 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 2.3E-10 5E-15 99.7 12.5 159 127-300 1-173 (232)
303 COG1703 ArgK Putative periplas 99.2 2.8E-10 6E-15 100.7 12.3 65 237-306 190-257 (323)
304 KOG0410 Predicted GTP binding 99.2 1.5E-10 3.2E-15 102.9 10.1 157 123-304 176-342 (410)
305 PF03029 ATP_bind_1: Conserved 99.2 1.2E-10 2.6E-15 102.4 9.5 127 172-303 92-237 (238)
306 KOG0458 Elongation factor 1 al 99.2 1.8E-10 3.9E-15 109.4 11.2 151 124-294 176-373 (603)
307 cd01858 NGP_1 NGP-1. Autoanti 99.2 7.1E-11 1.5E-15 97.3 7.5 56 125-181 102-157 (157)
308 PRK10463 hydrogenase nickel in 99.2 2.8E-10 6E-15 101.9 11.3 58 236-301 230-287 (290)
309 TIGR00101 ureG urease accessor 99.2 4.4E-10 9.5E-15 96.3 11.9 82 209-302 114-195 (199)
310 cd04178 Nucleostemin_like Nucl 99.2 9.3E-11 2E-15 98.1 7.4 58 123-181 115-172 (172)
311 KOG1673 Ras GTPases [General f 99.1 3.3E-10 7.1E-15 90.4 9.6 156 125-301 20-184 (205)
312 PF00350 Dynamin_N: Dynamin fa 99.1 9E-10 2E-14 91.3 12.1 66 172-246 102-168 (168)
313 TIGR03597 GTPase_YqeH ribosome 99.1 1E-10 2.2E-15 109.0 5.8 123 126-251 155-281 (360)
314 COG1161 Predicted GTPases [Gen 99.1 2.7E-10 5.8E-15 104.6 7.5 59 126-185 133-191 (322)
315 KOG1487 GTP-binding protein DR 99.1 2.3E-10 4.9E-15 98.9 6.3 159 120-304 54-282 (358)
316 KOG1144 Translation initiation 99.1 2.1E-09 4.6E-14 104.3 12.9 166 125-305 475-689 (1064)
317 COG4108 PrfC Peptide chain rel 99.0 2.3E-09 5.1E-14 98.9 11.1 127 126-271 13-162 (528)
318 KOG3905 Dynein light intermedi 99.0 8.7E-09 1.9E-13 91.8 14.3 162 127-302 54-289 (473)
319 cd01859 MJ1464 MJ1464. This f 99.0 2.8E-09 6E-14 87.6 9.7 95 194-303 2-96 (156)
320 PRK09563 rbgA GTPase YlqF; Rev 99.0 1.6E-09 3.6E-14 98.0 8.6 61 124-185 120-180 (287)
321 COG0480 FusA Translation elong 99.0 9.3E-09 2E-13 102.4 13.6 118 122-252 7-144 (697)
322 COG0050 TufB GTPases - transla 99.0 9.8E-09 2.1E-13 90.4 12.1 145 126-287 13-177 (394)
323 COG5019 CDC3 Septin family pro 99.0 2.3E-08 5E-13 90.9 14.9 139 125-273 23-190 (373)
324 cd01855 YqeH YqeH. YqeH is an 99.0 1.2E-09 2.7E-14 92.7 6.3 56 126-181 128-190 (190)
325 COG0378 HypB Ni2+-binding GTPa 98.9 3.6E-09 7.8E-14 88.3 8.2 80 210-301 120-199 (202)
326 TIGR03596 GTPase_YlqF ribosome 98.9 2.7E-09 5.9E-14 96.1 8.0 60 125-185 118-177 (276)
327 cd01849 YlqF_related_GTPase Yl 98.9 2.9E-09 6.2E-14 87.5 7.2 57 124-181 99-155 (155)
328 KOG1424 Predicted GTP-binding 98.9 2.2E-09 4.7E-14 100.8 6.0 59 126-185 315-373 (562)
329 KOG0466 Translation initiation 98.9 1.4E-09 3.1E-14 95.9 4.5 161 122-302 35-240 (466)
330 KOG2655 Septin family protein 98.9 1.3E-07 2.8E-12 86.6 16.6 139 125-273 21-186 (366)
331 KOG1491 Predicted GTP-binding 98.9 1.9E-08 4.2E-13 90.2 11.0 85 125-218 20-125 (391)
332 cd01856 YlqF YlqF. Proteins o 98.9 7.7E-09 1.7E-13 86.4 7.9 56 125-181 115-170 (171)
333 cd01855 YqeH YqeH. YqeH is an 98.9 2.3E-08 5E-13 84.9 10.8 99 195-303 25-125 (190)
334 PRK13796 GTPase YqeH; Provisio 98.8 6.6E-09 1.4E-13 97.1 6.5 58 126-183 161-222 (365)
335 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.8E-08 6E-13 81.8 9.3 89 204-303 5-95 (157)
336 PF05783 DLIC: Dynein light in 98.8 9.1E-08 2E-12 91.6 13.7 67 236-302 196-263 (472)
337 cd01849 YlqF_related_GTPase Yl 98.8 5.2E-08 1.1E-12 80.0 10.6 83 209-302 1-84 (155)
338 cd01859 MJ1464 MJ1464. This f 98.8 2.5E-08 5.3E-13 81.9 7.7 56 125-181 101-156 (156)
339 KOG1547 Septin CDC10 and relat 98.8 1.2E-07 2.6E-12 81.4 11.6 124 126-250 47-198 (336)
340 PRK12288 GTPase RsgA; Reviewed 98.7 3E-08 6.5E-13 91.8 7.8 56 127-183 207-269 (347)
341 KOG0448 Mitofusin 1 GTPase, in 98.7 2E-07 4.3E-12 90.5 13.5 99 172-287 207-310 (749)
342 PRK12289 GTPase RsgA; Reviewed 98.7 2.5E-08 5.5E-13 92.4 7.2 57 127-184 174-237 (352)
343 cd01856 YlqF YlqF. Proteins o 98.7 1.5E-07 3.3E-12 78.5 11.0 93 196-302 8-100 (171)
344 cd01851 GBP Guanylate-binding 98.7 7.8E-07 1.7E-11 77.6 15.8 144 124-274 6-177 (224)
345 TIGR03596 GTPase_YlqF ribosome 98.7 1.8E-07 4E-12 84.2 12.2 97 194-304 8-104 (276)
346 COG5192 BMS1 GTP-binding prote 98.7 2.3E-07 4.9E-12 88.2 11.5 138 124-288 68-211 (1077)
347 PF03193 DUF258: Protein of un 98.6 2.8E-08 6.2E-13 81.6 4.5 57 127-183 37-99 (161)
348 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.8E-07 3.8E-12 75.6 8.8 76 203-290 7-84 (141)
349 TIGR00157 ribosome small subun 98.6 1.1E-07 2.5E-12 84.0 7.8 94 193-300 25-120 (245)
350 TIGR00157 ribosome small subun 98.6 6.9E-08 1.5E-12 85.4 6.3 56 127-183 122-183 (245)
351 KOG1954 Endocytosis/signaling 98.6 7.9E-07 1.7E-11 80.8 13.0 126 123-251 56-226 (532)
352 PRK09563 rbgA GTPase YlqF; Rev 98.6 4.9E-07 1.1E-11 81.9 11.8 97 195-305 12-108 (287)
353 KOG2423 Nucleolar GTPase [Gene 98.6 2.2E-08 4.8E-13 91.3 2.2 63 123-186 305-367 (572)
354 KOG0468 U5 snRNP-specific prot 98.6 2.7E-07 5.9E-12 89.1 9.6 113 124-249 127-262 (971)
355 COG5258 GTPBP1 GTPase [General 98.6 2.7E-07 5.9E-12 84.1 8.7 162 125-301 117-337 (527)
356 KOG3886 GTP-binding protein [S 98.6 2.4E-07 5.2E-12 79.1 7.7 113 126-252 5-132 (295)
357 KOG0460 Mitochondrial translat 98.5 1.4E-06 3.1E-11 78.4 12.7 144 125-286 54-218 (449)
358 TIGR03597 GTPase_YqeH ribosome 98.5 6.6E-07 1.4E-11 83.6 11.0 99 193-301 52-151 (360)
359 TIGR00092 GTP-binding protein 98.5 2.1E-07 4.6E-12 86.1 7.5 85 126-218 3-108 (368)
360 PRK00098 GTPase RsgA; Reviewed 98.5 3.2E-07 6.9E-12 83.5 7.2 56 127-183 166-228 (298)
361 KOG1143 Predicted translation 98.5 6.4E-07 1.4E-11 81.5 8.5 158 126-299 168-384 (591)
362 KOG2484 GTPase [General functi 98.5 1.1E-07 2.3E-12 87.2 3.4 58 126-184 253-310 (435)
363 smart00010 small_GTPase Small 98.4 2.4E-07 5.2E-12 72.3 3.9 25 126-150 1-25 (124)
364 PRK12289 GTPase RsgA; Reviewed 98.4 1.8E-06 3.9E-11 80.1 10.0 82 207-300 89-172 (352)
365 TIGR03348 VI_IcmF type VI secr 98.4 3.6E-06 7.8E-11 89.7 13.6 125 124-251 110-258 (1169)
366 PRK00098 GTPase RsgA; Reviewed 98.4 1.7E-06 3.7E-11 78.8 9.6 84 205-299 78-163 (298)
367 COG1162 Predicted GTPases [Gen 98.4 1E-06 2.2E-11 79.0 6.9 125 58-183 73-228 (301)
368 PRK13796 GTPase YqeH; Provisio 98.3 6.5E-06 1.4E-10 77.0 12.2 85 210-301 72-157 (365)
369 KOG0447 Dynamin-like GTP bindi 98.3 2E-05 4.3E-10 75.1 15.0 131 120-252 303-495 (980)
370 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.9E-06 4.1E-11 78.1 8.1 58 126-183 162-225 (287)
371 PRK10416 signal recognition pa 98.3 1.5E-05 3.2E-10 73.2 13.8 153 125-297 114-304 (318)
372 KOG0467 Translation elongation 98.3 5.9E-06 1.3E-10 81.2 11.4 114 121-248 5-136 (887)
373 KOG2485 Conserved ATP/GTP bind 98.3 2.3E-06 5E-11 76.4 7.8 63 123-185 141-210 (335)
374 KOG0463 GTP-binding protein GP 98.3 7.1E-06 1.5E-10 74.8 10.8 155 126-298 134-353 (641)
375 KOG1707 Predicted Ras related/ 98.3 2.3E-05 4.9E-10 75.3 13.9 158 120-302 420-582 (625)
376 PRK12288 GTPase RsgA; Reviewed 98.2 9E-06 1.9E-10 75.4 10.7 85 207-300 120-205 (347)
377 TIGR00064 ftsY signal recognit 98.2 5.7E-05 1.2E-09 67.8 15.1 152 125-297 72-262 (272)
378 TIGR01425 SRP54_euk signal rec 98.2 4.8E-05 1E-09 72.1 14.6 116 126-250 101-253 (429)
379 PRK14974 cell division protein 98.2 1.7E-05 3.8E-10 73.0 11.3 101 172-297 224-324 (336)
380 cd01854 YjeQ_engC YjeQ/EngC. 98.2 7.6E-06 1.7E-10 74.1 8.3 83 206-300 77-161 (287)
381 cd03112 CobW_like The function 98.1 3.9E-05 8.3E-10 63.2 10.7 22 127-148 2-23 (158)
382 PF02492 cobW: CobW/HypB/UreG, 98.1 3.9E-05 8.5E-10 64.5 10.5 128 127-273 2-170 (178)
383 KOG0465 Mitochondrial elongati 98.0 9.6E-06 2.1E-10 78.1 6.9 118 122-252 36-172 (721)
384 KOG0464 Elongation factor G [T 98.0 2E-06 4.3E-11 79.3 2.1 118 121-251 33-169 (753)
385 PRK14722 flhF flagellar biosyn 98.0 0.00012 2.5E-09 68.4 12.9 117 127-250 139-295 (374)
386 PRK01889 GTPase RsgA; Reviewed 97.9 7.1E-05 1.5E-09 69.9 10.4 82 206-299 111-193 (356)
387 PRK01889 GTPase RsgA; Reviewed 97.9 3.1E-05 6.7E-10 72.2 8.0 125 58-183 105-259 (356)
388 COG0523 Putative GTPases (G3E 97.9 0.00012 2.6E-09 67.1 11.4 149 126-294 2-192 (323)
389 PF00448 SRP54: SRP54-type pro 97.9 0.00014 2.9E-09 62.2 11.0 115 127-250 3-154 (196)
390 KOG3859 Septins (P-loop GTPase 97.9 5.1E-05 1.1E-09 66.8 8.4 126 125-251 42-191 (406)
391 cd04178 Nucleostemin_like Nucl 97.9 7.7E-05 1.7E-09 62.3 9.3 42 209-250 1-44 (172)
392 PRK12727 flagellar biosynthesi 97.9 0.00041 8.9E-09 67.2 14.4 22 126-147 351-372 (559)
393 smart00275 G_alpha G protein a 97.8 0.0002 4.3E-09 66.5 11.8 134 158-304 170-335 (342)
394 cd00066 G-alpha G protein alph 97.8 0.00023 4.9E-09 65.5 12.0 135 158-305 147-313 (317)
395 COG3523 IcmF Type VI protein s 97.8 0.00011 2.3E-09 77.1 10.8 125 123-251 123-271 (1188)
396 TIGR02475 CobW cobalamin biosy 97.8 0.00035 7.6E-09 64.8 12.8 24 125-148 4-27 (341)
397 KOG1534 Putative transcription 97.7 0.00019 4.1E-09 60.9 8.7 129 170-305 97-253 (273)
398 PRK11889 flhF flagellar biosyn 97.7 0.00025 5.3E-09 66.4 10.1 117 125-250 241-391 (436)
399 PRK14721 flhF flagellar biosyn 97.7 0.00052 1.1E-08 65.1 11.6 22 126-147 192-213 (420)
400 KOG0082 G-protein alpha subuni 97.7 0.00073 1.6E-08 62.2 12.0 128 165-305 188-346 (354)
401 KOG0459 Polypeptide release fa 97.6 0.00016 3.5E-09 66.8 7.3 155 124-296 78-279 (501)
402 COG1618 Predicted nucleotide k 97.6 0.0015 3.3E-08 53.3 12.1 23 125-147 5-27 (179)
403 COG1161 Predicted GTPases [Gen 97.6 0.00052 1.1E-08 63.2 10.3 93 196-301 23-115 (322)
404 cd03114 ArgK-like The function 97.6 0.00028 6E-09 57.5 7.5 20 128-147 2-21 (148)
405 PRK14723 flhF flagellar biosyn 97.5 0.0011 2.4E-08 67.0 12.7 21 127-147 187-207 (767)
406 PRK12723 flagellar biosynthesi 97.5 0.0033 7.3E-08 59.2 14.7 118 125-250 174-326 (388)
407 PRK00771 signal recognition pa 97.5 0.00076 1.7E-08 64.4 10.4 24 124-147 94-117 (437)
408 PF01018 GTP1_OBG: GTP1/OBG; 97.5 1.5E-05 3.4E-10 65.2 -1.0 60 64-124 80-142 (156)
409 PRK05703 flhF flagellar biosyn 97.5 0.003 6.6E-08 60.3 13.8 117 126-250 222-371 (424)
410 PRK11537 putative GTP-binding 97.4 0.00062 1.3E-08 62.5 8.7 25 124-148 3-27 (318)
411 PRK06995 flhF flagellar biosyn 97.4 0.002 4.3E-08 62.2 12.5 21 127-147 258-278 (484)
412 PRK12724 flagellar biosynthesi 97.4 0.0011 2.4E-08 62.7 10.3 116 127-250 225-373 (432)
413 PRK13695 putative NTPase; Prov 97.4 0.0062 1.3E-07 50.7 13.8 21 127-147 2-22 (174)
414 PRK10867 signal recognition pa 97.4 0.00084 1.8E-08 64.0 9.4 23 125-147 100-122 (433)
415 PF09547 Spore_IV_A: Stage IV 97.4 0.0014 3E-08 61.4 10.4 153 123-287 15-219 (492)
416 COG1419 FlhF Flagellar GTP-bin 97.4 0.00067 1.5E-08 63.3 8.1 117 125-250 203-352 (407)
417 cd03115 SRP The signal recogni 97.4 0.0023 4.9E-08 53.2 10.5 71 172-251 84-154 (173)
418 KOG0705 GTPase-activating prot 97.3 0.00072 1.6E-08 64.7 7.4 154 126-306 31-192 (749)
419 KOG1533 Predicted GTPase [Gene 97.3 0.00037 8E-09 60.1 4.9 79 171-253 97-180 (290)
420 PRK12726 flagellar biosynthesi 97.3 0.0038 8.3E-08 58.3 11.8 23 125-147 206-228 (407)
421 TIGR00959 ffh signal recogniti 97.3 0.006 1.3E-07 58.2 13.3 23 125-147 99-121 (428)
422 PRK06731 flhF flagellar biosyn 97.2 0.0051 1.1E-07 55.1 11.8 117 125-250 75-225 (270)
423 KOG2484 GTPase [General functi 97.2 0.0018 4E-08 59.9 8.3 68 199-275 138-207 (435)
424 KOG1424 Predicted GTP-binding 97.2 0.0017 3.7E-08 61.9 8.2 79 197-287 164-244 (562)
425 KOG3887 Predicted small GTPase 97.1 0.0024 5.2E-08 55.4 7.9 116 125-251 27-150 (347)
426 KOG2423 Nucleolar GTPase [Gene 97.0 0.0078 1.7E-07 55.8 10.3 98 195-303 201-300 (572)
427 cd02038 FleN-like FleN is a me 97.0 0.008 1.7E-07 48.2 9.5 99 130-249 5-110 (139)
428 COG3640 CooC CO dehydrogenase 96.9 0.0043 9.3E-08 53.8 8.1 44 206-249 154-198 (255)
429 COG0552 FtsY Signal recognitio 96.9 0.0035 7.5E-08 57.1 7.8 154 124-297 138-329 (340)
430 PF06858 NOG1: Nucleolar GTP-b 96.9 0.0025 5.5E-08 42.7 4.7 39 209-247 15-58 (58)
431 COG1162 Predicted GTPases [Gen 96.8 0.0088 1.9E-07 53.9 9.6 80 211-300 83-164 (301)
432 PF08433 KTI12: Chromatin asso 96.8 0.0027 5.8E-08 56.9 6.2 159 126-299 2-170 (270)
433 cd02036 MinD Bacterial cell di 96.8 0.031 6.7E-07 46.2 12.2 64 172-250 64-128 (179)
434 cd00071 GMPK Guanosine monopho 96.8 0.0013 2.8E-08 52.8 3.4 21 128-148 2-22 (137)
435 KOG2743 Cobalamin synthesis pr 96.8 0.0057 1.2E-07 54.7 7.6 29 121-149 53-81 (391)
436 KOG0446 Vacuolar sorting prote 96.7 0.0021 4.5E-08 64.4 5.4 127 123-252 27-215 (657)
437 PF13207 AAA_17: AAA domain; P 96.7 0.0014 3E-08 50.9 3.0 22 127-148 1-22 (121)
438 COG1116 TauB ABC-type nitrate/ 96.7 0.0013 2.9E-08 57.4 3.0 23 127-149 31-53 (248)
439 PRK14737 gmk guanylate kinase; 96.6 0.0016 3.6E-08 55.0 3.0 23 127-149 6-28 (186)
440 PRK08118 topology modulation p 96.5 0.0023 4.9E-08 53.2 3.2 23 126-148 2-24 (167)
441 COG0194 Gmk Guanylate kinase [ 96.5 0.0014 3E-08 54.9 1.6 23 127-149 6-28 (191)
442 PF00005 ABC_tran: ABC transpo 96.4 0.0026 5.7E-08 50.5 3.1 23 127-149 13-35 (137)
443 PRK07261 topology modulation p 96.4 0.0025 5.5E-08 53.1 3.0 22 127-148 2-23 (171)
444 PF13555 AAA_29: P-loop contai 96.4 0.0035 7.6E-08 42.9 3.0 21 127-147 25-45 (62)
445 PRK14738 gmk guanylate kinase; 96.4 0.0024 5.2E-08 54.9 2.7 22 127-148 15-36 (206)
446 COG1136 SalX ABC-type antimicr 96.3 0.0029 6.3E-08 54.9 3.0 22 127-148 33-54 (226)
447 cd02019 NK Nucleoside/nucleoti 96.3 0.0036 7.8E-08 43.9 2.9 21 128-148 2-22 (69)
448 COG3840 ThiQ ABC-type thiamine 96.3 0.0033 7.2E-08 52.5 2.9 22 127-148 27-48 (231)
449 COG0563 Adk Adenylate kinase a 96.3 0.0033 7.1E-08 52.8 2.9 22 127-148 2-23 (178)
450 TIGR03574 selen_PSTK L-seryl-t 96.3 0.026 5.7E-07 49.8 8.9 92 212-303 70-168 (249)
451 PF13671 AAA_33: AAA domain; P 96.3 0.0036 7.7E-08 50.0 3.0 21 128-148 2-22 (143)
452 PF03205 MobB: Molybdopterin g 96.2 0.004 8.7E-08 50.1 3.0 23 126-148 1-23 (140)
453 PF13521 AAA_28: AAA domain; P 96.2 0.0029 6.4E-08 52.0 2.2 22 127-148 1-22 (163)
454 cd01983 Fer4_NifH The Fer4_Nif 96.1 0.05 1.1E-06 39.6 8.6 44 128-182 2-45 (99)
455 KOG0780 Signal recognition par 96.1 0.0082 1.8E-07 55.6 4.9 22 126-147 102-123 (483)
456 KOG0469 Elongation factor 2 [T 96.1 0.0092 2E-07 56.9 5.3 112 123-249 17-163 (842)
457 cd03111 CpaE_like This protein 96.0 0.04 8.6E-07 42.0 7.6 95 131-245 6-106 (106)
458 KOG2485 Conserved ATP/GTP bind 96.0 0.041 8.9E-07 49.7 8.5 54 197-252 36-89 (335)
459 PRK10078 ribose 1,5-bisphospho 96.0 0.0057 1.2E-07 51.6 3.0 22 127-148 4-25 (186)
460 cd00820 PEPCK_HprK Phosphoenol 96.0 0.006 1.3E-07 46.7 2.8 20 127-146 17-36 (107)
461 TIGR02322 phosphon_PhnN phosph 96.0 0.0056 1.2E-07 51.1 2.9 22 127-148 3-24 (179)
462 COG3839 MalK ABC-type sugar tr 96.0 0.0054 1.2E-07 56.4 3.0 23 127-149 31-53 (338)
463 PF13238 AAA_18: AAA domain; P 96.0 0.0063 1.4E-07 47.3 3.0 21 128-148 1-21 (129)
464 COG0541 Ffh Signal recognition 95.9 0.05 1.1E-06 51.3 9.2 25 123-147 98-122 (451)
465 cd02023 UMPK Uridine monophosp 95.9 0.0061 1.3E-07 51.8 2.9 21 128-148 2-22 (198)
466 COG1126 GlnQ ABC-type polar am 95.9 0.0064 1.4E-07 52.2 2.9 23 127-149 30-52 (240)
467 PRK06217 hypothetical protein; 95.9 0.0069 1.5E-07 50.9 3.0 23 126-148 2-24 (183)
468 smart00072 GuKc Guanylate kina 95.9 0.0062 1.3E-07 51.3 2.7 23 127-149 4-26 (184)
469 cd03225 ABC_cobalt_CbiO_domain 95.9 0.0068 1.5E-07 52.0 3.0 22 127-148 29-50 (211)
470 TIGR03263 guanyl_kin guanylate 95.8 0.0071 1.5E-07 50.4 3.0 22 127-148 3-24 (180)
471 PF00503 G-alpha: G-protein al 95.8 0.02 4.3E-07 54.2 6.3 125 165-302 228-389 (389)
472 PRK14530 adenylate kinase; Pro 95.8 0.0073 1.6E-07 52.2 3.1 23 126-148 4-26 (215)
473 PF03266 NTPase_1: NTPase; In 95.8 0.0075 1.6E-07 50.2 3.0 22 127-148 1-22 (168)
474 cd03222 ABC_RNaseL_inhibitor T 95.8 0.0074 1.6E-07 50.6 3.0 22 127-148 27-48 (177)
475 COG3638 ABC-type phosphate/pho 95.8 0.0073 1.6E-07 52.4 2.9 21 127-147 32-52 (258)
476 KOG3347 Predicted nucleotide k 95.8 0.0075 1.6E-07 48.6 2.8 26 123-148 5-30 (176)
477 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.8 0.0079 1.7E-07 51.9 3.2 22 127-148 32-53 (218)
478 TIGR01166 cbiO cobalt transpor 95.8 0.0076 1.6E-07 50.9 3.0 22 127-148 20-41 (190)
479 smart00382 AAA ATPases associa 95.8 0.0087 1.9E-07 46.5 3.2 22 127-148 4-25 (148)
480 TIGR00235 udk uridine kinase. 95.8 0.0071 1.5E-07 51.9 2.8 22 127-148 8-29 (207)
481 cd03238 ABC_UvrA The excision 95.8 0.0083 1.8E-07 50.3 3.2 21 127-147 23-43 (176)
482 cd03264 ABC_drug_resistance_li 95.8 0.0077 1.7E-07 51.7 3.0 22 127-148 27-48 (211)
483 TIGR00960 3a0501s02 Type II (G 95.8 0.0082 1.8E-07 51.7 3.2 22 127-148 31-52 (216)
484 cd03261 ABC_Org_Solvent_Resist 95.8 0.0077 1.7E-07 52.7 3.0 22 127-148 28-49 (235)
485 PF00625 Guanylate_kin: Guanyl 95.7 0.0019 4.2E-08 54.3 -0.8 22 127-148 4-25 (183)
486 TIGR01360 aden_kin_iso1 adenyl 95.7 0.0096 2.1E-07 49.8 3.4 23 125-147 3-25 (188)
487 COG4088 Predicted nucleotide k 95.7 0.14 3E-06 43.9 10.1 145 126-284 2-155 (261)
488 PRK10751 molybdopterin-guanine 95.7 0.0076 1.6E-07 50.3 2.7 24 125-148 6-29 (173)
489 PF00004 AAA: ATPase family as 95.7 0.0089 1.9E-07 46.7 2.9 21 128-148 1-21 (132)
490 cd03226 ABC_cobalt_CbiO_domain 95.7 0.009 1.9E-07 51.1 3.2 22 127-148 28-49 (205)
491 TIGR02673 FtsE cell division A 95.7 0.0086 1.9E-07 51.5 3.0 22 127-148 30-51 (214)
492 TIGR03608 L_ocin_972_ABC putat 95.7 0.0093 2E-07 50.9 3.2 22 127-148 26-47 (206)
493 PRK03839 putative kinase; Prov 95.7 0.0089 1.9E-07 50.0 3.0 22 127-148 2-23 (180)
494 cd03265 ABC_DrrA DrrA is the A 95.7 0.0095 2E-07 51.5 3.2 22 127-148 28-49 (220)
495 cd03269 ABC_putative_ATPase Th 95.7 0.009 2E-07 51.2 3.1 22 127-148 28-49 (210)
496 cd03293 ABC_NrtD_SsuB_transpor 95.7 0.009 2E-07 51.7 3.0 22 127-148 32-53 (220)
497 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.0093 2E-07 48.2 2.9 22 127-148 28-49 (144)
498 cd03292 ABC_FtsE_transporter F 95.7 0.0097 2.1E-07 51.1 3.2 22 127-148 29-50 (214)
499 cd01130 VirB11-like_ATPase Typ 95.6 0.0099 2.1E-07 50.2 3.1 22 127-148 27-48 (186)
500 cd03263 ABC_subfamily_A The AB 95.6 0.0093 2E-07 51.5 3.0 22 127-148 30-51 (220)
No 1
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.5e-31 Score=251.24 Aligned_cols=213 Identities=26% Similarity=0.323 Sum_probs=160.4
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCCC--------------eEEEEc
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGLP--------------EFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~~--------------~I~lvG 132 (308)
|.||.||.+.+.++. +.+...+++++++|+||.|| +||.+|.++.+++|+.++.+.+ +|+|+|
T Consensus 87 i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG-~gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG 165 (424)
T PRK12297 87 IKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGG-RGNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVG 165 (424)
T ss_pred EecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCC-cCchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEc
Confidence 999999999986654 55566788999999999986 9999999999999999998877 999999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEeC--CCEEEecCCCcccCCC-chhhhhchHHHHHHHHHhcCC
Q 021750 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRIN--DSWYLVDLPGYGYAAA-PRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.||||||||+|+|++.+ +.++..|++|..... +.++ ..++++||||+++... +.. +...|++....
T Consensus 166 ~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~g-------Lg~~fLrhier 236 (424)
T PRK12297 166 FPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVG-------LGHQFLRHIER 236 (424)
T ss_pred CCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccch-------HHHHHHHHHhh
Confidence 99999999999999875 345677888876543 3333 4799999999976322 222 33445555555
Q ss_pred ccEEEEEEeCCCC---CChhHH-HHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 208 LVSVFLLIDASIP---AKPIDL-EYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 208 ~~~vl~viD~~~~---~~~~~~-~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
++++++|+|+++. ....+. .+..++.. .++|++||+||+|+.. ..+.++.+.+.+. .
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~--------~~e~l~~l~~~l~------~ 302 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE--------AEENLEEFKEKLG------P 302 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC--------CHHHHHHHHHHhC------C
Confidence 6779999999754 222221 22223321 4799999999999843 2233444444432 5
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+++++||++++|+++++++|.+.+...
T Consensus 303 ~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 303 KVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 799999999999999999999887653
No 2
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.98 E-value=1.9e-31 Score=244.71 Aligned_cols=217 Identities=22% Similarity=0.276 Sum_probs=157.8
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCC--------------CeEEEEc
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGL--------------PEFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~--------------~~I~lvG 132 (308)
|.||.||.+.+.++. +.+...+++++++|+||.|| ++|.+|.++.+++|..++.|. ++|+|||
T Consensus 87 ~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg-~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG 165 (335)
T PRK12299 87 LKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGG-LGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLADVGLVG 165 (335)
T ss_pred EEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCc-CCchhhccccCCCCccccCCCCCcEEEEEEEEcccCCEEEEc
Confidence 999999999986654 44566778899999999986 999999999999998877663 4999999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEe-CC-CEEEecCCCcccCC-CchhhhhchHHHHHHHHHhcCC
Q 021750 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRI-ND-SWYLVDLPGYGYAA-APRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~-~~-~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.||||||||+|+|++.+ +.++..|++|... ..+.+ +. ++++|||||+.+.. .... +...|++....
T Consensus 166 ~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~g-------Lg~~flrhie~ 236 (335)
T PRK12299 166 LPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAG-------LGHRFLKHIER 236 (335)
T ss_pred CCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcccc-------HHHHHHHHhhh
Confidence 99999999999999875 4577788888764 33444 33 69999999997643 2223 33344444445
Q ss_pred ccEEEEEEeCCCCCChhHH-HHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 208 LVSVFLLIDASIPAKPIDL-EYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 208 ~~~vl~viD~~~~~~~~~~-~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
++++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.+... ...+..+.+ .. . ...+++
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----~~~~~~~~~---~~-~--~~~~i~ 306 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE----EREKRAALE---LA-A--LGGPVF 306 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh----HHHHHHHHH---HH-h--cCCCEE
Confidence 5679999999876544332 12222221 4789999999999975331 011111111 11 1 136899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++||++++|+++++++|.+.+.+.
T Consensus 307 ~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 307 LISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999988654
No 3
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.98 E-value=2.8e-31 Score=235.46 Aligned_cols=219 Identities=25% Similarity=0.327 Sum_probs=171.3
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCCC--------------eEEEEc
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGLP--------------EFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~~--------------~I~lvG 132 (308)
|.||+||.+.+.++. +.+....++++++++||.|| +||.+|.++.+++|+.+..|.+ +|++||
T Consensus 88 i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG-~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG 166 (369)
T COG0536 88 IKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGG-LGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVG 166 (369)
T ss_pred EEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCC-ccchhhcCcccCCcccCCCCCCCceEEEEEEEeeeccccccc
Confidence 999999999998876 66777889999999999986 9999999999999999887754 899999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEE--eCCCEEEecCCCcccC-CCchhhhhchHHHHHHHHHhcCC
Q 021750 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFR--INDSWYLVDLPGYGYA-AAPRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~--~~~~~~liDtpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.|||||||||++++..+ +.+.++|.||... ..+. .+..|++.|+||+++. +.+.+++.+ |++| .+++.
T Consensus 167 ~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~---FLrH--IERt~ 239 (369)
T COG0536 167 LPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLR---FLRH--IERTR 239 (369)
T ss_pred CCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHH---HHHH--HHhhh
Confidence 99999999999999986 5566777777643 2222 2447999999999984 667777766 7777 55665
Q ss_pred ccEEEEEEeCCCCCC---hhHH-----HHHHHh-ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 208 LVSVFLLIDASIPAK---PIDL-----EYASWL-GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 208 ~~~vl~viD~~~~~~---~~~~-----~l~~~~-~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
+ +++|+|.+.... ..+. ++..+- ...++|.+||+||+|+.. .++.++.+.+.+.+...+..
T Consensus 240 v--L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~--------~~e~~~~~~~~l~~~~~~~~ 309 (369)
T COG0536 240 V--LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL--------DEEELEELKKALAEALGWEV 309 (369)
T ss_pred e--eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc--------CHHHHHHHHHHHHHhcCCCc
Confidence 4 899999985542 1121 222221 136899999999999765 45667788887776655444
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.++ +||.+++|+++++..+.+++....
T Consensus 310 ~~~-ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 310 FYL-ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cee-eehhcccCHHHHHHHHHHHHHHhh
Confidence 444 999999999999999999987653
No 4
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.97 E-value=8.3e-31 Score=244.91 Aligned_cols=217 Identities=21% Similarity=0.256 Sum_probs=158.0
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCCC--------------eEEEEc
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGLP--------------EFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~~--------------~I~lvG 132 (308)
|.||.||.+++.++. +.+...+++++++|+||+|| ++|.+|.++.+++|+.++.+.+ +|+|||
T Consensus 88 i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG-~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~iadValVG 166 (390)
T PRK12298 88 IKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHG-LGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLADVGLLG 166 (390)
T ss_pred EEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCc-cchhhhccCccCCCcccCCCCCCceEEEEEeeeccccEEEEc
Confidence 999999999876654 44566778999999999986 9999999999999999988876 999999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC--CEEEecCCCcccCC-CchhhhhchHHHHHHHHHhcCC
Q 021750 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND--SWYLVDLPGYGYAA-APRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~--~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.||||||||+|+|++.+ +.+++.|+||+... .+.+++ .++++||||+.+.. .+..++.. ++ +....
T Consensus 167 ~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~---~l----~~i~r 237 (390)
T PRK12298 167 LPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIR---FL----KHLER 237 (390)
T ss_pred CCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHH---HH----HHHHh
Confidence 99999999999999875 47888999987643 344443 59999999998643 22232222 33 33444
Q ss_pred ccEEEEEEeCCCC---CChhH-HHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 208 LVSVFLLIDASIP---AKPID-LEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 208 ~~~vl~viD~~~~---~~~~~-~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
++++++|+|++.. ....+ ..+...+.. .++|+++|+||+|+....+ +.+..+.+.+.+....
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e---------l~~~l~~l~~~~~~~~ 308 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE---------AEERAKAIVEALGWEG 308 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH---------HHHHHHHHHHHhCCCC
Confidence 5679999998732 22221 222333322 3689999999999875321 2222222322222224
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++++||++++|+++++++|.+.+.+
T Consensus 309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 309 PVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 79999999999999999999998764
No 5
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.97 E-value=8.5e-31 Score=249.13 Aligned_cols=217 Identities=21% Similarity=0.238 Sum_probs=160.0
Q ss_pred EEcCCCCCcCCCchh-hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCC--------------CeEEEEcC
Q 021750 69 LFVPPETEVSIDDSS-LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGL--------------PEFALVGR 133 (308)
Q Consensus 69 i~v~~gt~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~--------------~~I~lvG~ 133 (308)
|.||+||.+.+.+.+ +.+...+++++++|+||.|| +||.+|.++.+++|..++.|. .+|+|||.
T Consensus 89 i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG-~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~ 167 (500)
T PRK12296 89 LPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGG-LGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGF 167 (500)
T ss_pred EecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCc-CCCcccCCccCCCCccccCCCCCceEEEEEEecccceEEEEEc
Confidence 999999999986666 45566789999999999986 999999999999999887664 49999999
Q ss_pred CCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCC-CchhhhhchHHHHHHHHHhcCCcc
Q 021750 134 SNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAA-APRELRTDWDKFTKDYFLNRSTLV 209 (308)
Q Consensus 134 ~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 209 (308)
||||||||+|+|++.+ +.++..|++|... ..+.+++ +++++||||+++.. .+.. +...+++....++
T Consensus 168 PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~g-------Lg~~fLrhierad 238 (500)
T PRK12296 168 PSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKG-------LGLDFLRHIERCA 238 (500)
T ss_pred CCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhH-------HHHHHHHHHHhcC
Confidence 9999999999999875 4467888888764 3344444 89999999997532 2222 2223344444556
Q ss_pred EEEEEEeCCCCC----ChhH-----HHHHHHhc----------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021750 210 SVFLLIDASIPA----KPID-----LEYASWLG----------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 210 ~vl~viD~~~~~----~~~~-----~~l~~~~~----------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
++++|+|++... ...+ .++..+.. ..++|++||+||+|+.+.. +..+.+.+.+
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--------el~e~l~~~l 310 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--------ELAEFVRPEL 310 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--------HHHHHHHHHH
Confidence 799999997532 1111 13333332 2479999999999997532 2222333333
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
... .+++|++||++++|+++++++|.+++..++
T Consensus 311 ~~~---g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 311 EAR---GWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHc---CCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 321 368999999999999999999999998765
No 6
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.97 E-value=3.3e-30 Score=214.77 Aligned_cols=193 Identities=42% Similarity=0.655 Sum_probs=168.9
Q ss_pred hHHHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCC
Q 021750 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA 186 (308)
Q Consensus 107 ~~~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~ 186 (308)
+.+|..++....+.|++..+.|+++|++|||||||||+|++.+..+.++.+||.|+..+.+.+++++.++|.||+++...
T Consensus 6 ~~~f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv 85 (200)
T COG0218 6 KAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKV 85 (200)
T ss_pred ccEEEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccC
Confidence 46788888888899999999999999999999999999999887899999999999999999999999999999999887
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
..+..++|..++.+|+..+....++++++|+.++....|.++.+|+...++|++||+||+|.....+ ....+..+
T Consensus 86 ~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~-----~~k~l~~v 160 (200)
T COG0218 86 PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSE-----RNKQLNKV 160 (200)
T ss_pred CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhH-----HHHHHHHH
Confidence 7788889999999999999888899999999999999999999999999999999999999997543 33445555
Q ss_pred HHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 267 QELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 267 ~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
++.+.....+...++..|+.++.|++++...|.+.+..
T Consensus 161 ~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 161 AEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 55555444333338899999999999999999887764
No 7
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.97 E-value=3.9e-30 Score=235.84 Aligned_cols=216 Identities=24% Similarity=0.301 Sum_probs=154.6
Q ss_pred cCe-EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCC--------------CeE
Q 021750 66 LEK-LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGL--------------PEF 128 (308)
Q Consensus 66 ~~~-i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~--------------~~I 128 (308)
-|. |.||.||.+.+.++. +.+...+++++++|+||.|| .+|.+|.++.+++|...+.+. ++|
T Consensus 82 ~d~~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg-~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adV 160 (329)
T TIGR02729 82 EDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGG-LGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLLADV 160 (329)
T ss_pred CceEEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCC-CCcccccCccCCCCcccCCCCCCcEEEEEEEeeccccE
Confidence 344 999999999986554 44566778899999999986 999999999999998877663 599
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC--CCEEEecCCCcccCC-CchhhhhchHHHHHHHHH
Q 021750 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN--DSWYLVDLPGYGYAA-APRELRTDWDKFTKDYFL 203 (308)
Q Consensus 129 ~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~--~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~ 203 (308)
+|||.||||||||+|+|++.+ +.++..|++|... ..+.++ .++.+|||||+.+.. .... +...|++
T Consensus 161 ~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~g-------Lg~~flr 231 (329)
T TIGR02729 161 GLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAG-------LGHRFLK 231 (329)
T ss_pred EEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccccc-------HHHHHHH
Confidence 999999999999999999875 3466667666543 334443 379999999997643 2223 2233333
Q ss_pred hcCCccEEEEEEeCCCC---CChhHH-HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 204 NRSTLVSVFLLIDASIP---AKPIDL-EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~---~~~~~~-~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
....++++++|+|++.. ....+. .+...+. ..++|+++|+||+|+.... ..+++.+.+.+.+
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~---------~~~~~~~~l~~~~ 302 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE---------ELAELLKELKKAL 302 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH---------HHHHHHHHHHHHc
Confidence 33445669999999865 222221 1222221 1479999999999997532 1333333333322
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++++|+++++++|.+.+
T Consensus 303 --~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 303 --GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred --CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 26899999999999999999998865
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=233.26 Aligned_cols=243 Identities=21% Similarity=0.293 Sum_probs=179.7
Q ss_pred CCCchHHHHhhcCe----EEcCCCCCcCCCchhhHHHHhCCC-e--EEEeecccch--hhhhHHHhhccc----------
Q 021750 55 EPEPEPHVAISLEK----LFVPPETEVSIDDSSLSTRILKGS-N--IVLSKYARDA--QVAQAEFVKSSV---------- 115 (308)
Q Consensus 55 ~~~~~~~~~~~~~~----i~v~~gt~~~~~~~~~~~~~~~~~-~--i~~~~~~~~~--~~~~~~f~~s~~---------- 115 (308)
..++.+|...|+++ |||++|..+..++++.++..++.. + |+++++.++. ....++|++-..
T Consensus 70 ~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~H 149 (444)
T COG1160 70 QELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEH 149 (444)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhh
Confidence 45689999999999 999999999888888666555544 3 6666665543 233356664111
Q ss_pred -------------CC-C-C-CCCC---CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CE
Q 021750 116 -------------RT-E-D-CPSD---GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SW 173 (308)
Q Consensus 116 -------------~~-~-~-~~~~---~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~ 173 (308)
.. + + .... ...+|+++|.||||||||+|+|++.++ .++++.+|+|++.. .+++++ ++
T Consensus 150 g~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR-~Iv~~~aGTTRD~I~~~~e~~~~~~ 228 (444)
T COG1160 150 GRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEER-VIVSDIAGTTRDSIDIEFERDGRKY 228 (444)
T ss_pred ccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCce-EEecCCCCccccceeeeEEECCeEE
Confidence 11 1 1 1122 347999999999999999999999887 78999999999864 444555 79
Q ss_pred EEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc
Q 021750 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK 253 (308)
Q Consensus 174 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~ 253 (308)
.++||+|+.....-.+--+.|. .. ..+.....+++|++|+|++.+.+.++..+..++.+.+++++||+||||+.+..
T Consensus 229 ~liDTAGiRrk~ki~e~~E~~S-v~-rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~- 305 (444)
T COG1160 229 VLIDTAGIRRKGKITESVEKYS-VA-RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED- 305 (444)
T ss_pred EEEECCCCCcccccccceEEEe-eh-hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch-
Confidence 9999999976433222111222 11 22244455678999999999999999999999999999999999999998752
Q ss_pred CCCCCchhhHHHHHHHHHhhhc--CCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 254 NGGKRPEENLNDFQELIQGFFQ--TAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
....+++.+.++..++ .+.+++++||++|.|++++++.+.+.++.|.+
T Consensus 306 ------~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 306 ------EATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred ------hhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhcc
Confidence 2334555555554443 46899999999999999999999999998764
No 9
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.95 E-value=4.1e-27 Score=206.64 Aligned_cols=212 Identities=21% Similarity=0.292 Sum_probs=156.0
Q ss_pred eEEcCCCCCcCCCc-hhhHH-HHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCC--------------CCeEEEE
Q 021750 68 KLFVPPETEVSIDD-SSLST-RILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDG--------------LPEFALV 131 (308)
Q Consensus 68 ~i~v~~gt~~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~--------------~~~I~lv 131 (308)
.|.||.||.+.+.+ ..+++ +..++.++++++||.|| ++|..|.+..++.|...+.| +++|++|
T Consensus 124 ~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~arGG~GG-~gn~~fls~~~r~p~~~~~G~~G~e~~~~lELKsiadvGLV 202 (366)
T KOG1489|consen 124 EIRVPVGTVVKDIEQGKLVAELTKEGDRVIAARGGEGG-KGNKFFLSNENRSPKFSKPGLNGEERVIELELKSIADVGLV 202 (366)
T ss_pred EEecCCccEEeecccchhHHHhccCCcEEEEeecCCCC-ccceeeccccccCcccccCCCCCceEEEEEEeeeeccccee
Confidence 38899999999843 34555 55668889999999986 99999999888888776555 4599999
Q ss_pred cCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC--CEEEecCCCcccC-CCchhhhhchHHHHHHHHHhcC
Q 021750 132 GRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND--SWYLVDLPGYGYA-AAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 132 G~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~--~~~liDtpG~~~~-~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
|.||+|||||+|+|++.+ +.+.+++.||... ..+.+++ ++.+.|+||++++ +...+++.+ |++| .+++
T Consensus 203 G~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~---FLrH--iER~ 275 (366)
T KOG1489|consen 203 GFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYK---FLRH--IERC 275 (366)
T ss_pred cCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHH---HHHH--HHhh
Confidence 999999999999999986 4566666666543 3344444 6999999999985 556665554 6766 4444
Q ss_pred CccEEEEEEeCCCC---CChhHHHH-H---HHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 207 TLVSVFLLIDASIP---AKPIDLEY-A---SWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 207 ~~~~vl~viD~~~~---~~~~~~~l-~---~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
. .++||+|.+.+ ...+..++ . +.+. ..++|.+||+||+|+.+.+ ...++++.+.+. .
T Consensus 276 ~--~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------~~~l~~L~~~lq-----~ 341 (366)
T KOG1489|consen 276 K--GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-------KNLLSSLAKRLQ-----N 341 (366)
T ss_pred c--eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-------HHHHHHHHHHcC-----C
Confidence 4 49999999987 22222211 1 1111 2689999999999997432 233466666665 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..++++||++++|+.+++..|.+.
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhhc
Confidence 469999999999999999988764
No 10
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.94 E-value=3.6e-26 Score=192.72 Aligned_cols=178 Identities=47% Similarity=0.751 Sum_probs=138.3
Q ss_pred HHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCch
Q 021750 109 EFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 109 ~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~ 188 (308)
+|..++....+.++...++|+++|.+|+|||||+|+|++..+...+++.+++|.....+..++.+.+|||||+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~ 81 (179)
T TIGR03598 2 EFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSK 81 (179)
T ss_pred EEEeeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCCh
Confidence 45667777778888999999999999999999999999976556678888888887777766789999999987654433
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
.....|..+...|+..+..++++++|+|++.+....+.++..++...++|+++|+||+|+....+ .....+++.+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-----~~~~~~~i~~ 156 (179)
T TIGR03598 82 EEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSE-----LNKQLKKIKK 156 (179)
T ss_pred hHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHH-----HHHHHHHHHH
Confidence 33446667777888877777889999999988887777777777778899999999999975332 2334555555
Q ss_pred HHHhhhcCCCCEEEeecCCCCCHH
Q 021750 269 LIQGFFQTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~gi~ 292 (308)
.+... ....++|++||++|+|++
T Consensus 157 ~l~~~-~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 157 ALKKD-ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHhhc-cCCCceEEEECCCCCCCC
Confidence 55443 223589999999999974
No 11
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.94 E-value=8.3e-27 Score=201.39 Aligned_cols=272 Identities=49% Similarity=0.756 Sum_probs=221.4
Q ss_pred ccccccccCCCCCCCCCCCC----CCCchHHHHhhcCeEEcCCCCCcCCCchh-hHHHHhCCCeEEEeecccchhhhhHH
Q 021750 35 FSALKSTLSTTEPIPISHAV----EPEPEPHVAISLEKLFVPPETEVSIDDSS-LSTRILKGSNIVLSKYARDAQVAQAE 109 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~v~~gt~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 109 (308)
+.++++++....++|.++.. ....-.-...|.+..+++..+.+.+.... ...+.+.+.+|.++.-....+.....
T Consensus 39 r~~~~s~~k~~~~~~~~~r~~~~~~~~~f~~~~~a~s~~~i~k~~~~~~~t~~~~~~~v~~~snI~~sPf~~r~qv~~~~ 118 (320)
T KOG2486|consen 39 RKTTKSSLKKKRPYPNKERHNNHLNEIDFKTANDAPSSVDITKSRSIFDVTRKSYRKRVLSGSNIDVSPFLARKQVKSEK 118 (320)
T ss_pred hhcchhhhhcccCCCchhhcccccccCcchhhhcCCchhhcccccCcchhhhHHHHHHhccCCCcccCcccCchhhccce
Confidence 47889999999999888333 22233344555566888888888876665 56678889998887765444455555
Q ss_pred Hhhc--ccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC-CCCceEEEEEEEeCCCEEEecCCCcccCCC
Q 021750 110 FVKS--SVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK-TPGKTQCINHFRINDSWYLVDLPGYGYAAA 186 (308)
Q Consensus 110 f~~s--~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~liDtpG~~~~~~ 186 (308)
+..+ +..+.++|..+.+++++.|.+|||||||||.+++.+.....+. .+|.|+.++.+.++.+++++|.||++++..
T Consensus 119 ~V~~~~s~~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y 198 (320)
T KOG2486|consen 119 RVHGDGSVTAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGY 198 (320)
T ss_pred eeeccccceeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccC
Confidence 6665 5677788888999999999999999999999999776555554 899999999999999999999999988888
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHH-
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLND- 265 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~- 265 (308)
+.++...|.++...|+.++....-+++++|++.+....|...+.|+.+.++|+.+|+||||......+........+..
T Consensus 199 ~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~ 278 (320)
T KOG2486|consen 199 GFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKIN 278 (320)
T ss_pred CccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceee
Confidence 8888889999999999999998889999999999999999899999999999999999999887655433345555555
Q ss_pred HHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 266 FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 266 ~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+....+..|....||+.+|+.++.|+++|+-.|.+....|.
T Consensus 279 f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~~~~d 319 (320)
T KOG2486|consen 279 FQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLRGYWD 319 (320)
T ss_pred hhhccccceeccCCceeeecccccCceeeeeehhhhhcccc
Confidence 66677777777789999999999999999999988776654
No 12
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.94 E-value=2.9e-25 Score=189.33 Aligned_cols=191 Identities=45% Similarity=0.678 Sum_probs=147.0
Q ss_pred hhHHHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 106 AQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 106 ~~~~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
-++.|++|.....+.+.+..++|+++|.+|||||||+|+|++.++.+.+++.+++|+....+..+.++.+|||||+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 5 HNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAK 84 (196)
T ss_pred hHHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcC
Confidence 46778888877777788888999999999999999999999976567788888988877766666789999999976533
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLND 265 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~ 265 (308)
........+..+...|+..+..++++++++|++.+....+.++..++...++|+++++||+|+.+..+ .....+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~-----~~~~~~~ 159 (196)
T PRK00454 85 VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGE-----RKKQLKK 159 (196)
T ss_pred CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHH-----HHHHHHH
Confidence 32222346667778888888777788999999887776666667777777899999999999975432 1122233
Q ss_pred HHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 266 FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 266 ~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+.+.+... ..+++++||++++|+++++++|.+++++
T Consensus 160 i~~~l~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 160 VRKALKFG---DDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHhc---CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 33333321 4789999999999999999999988753
No 13
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.5e-24 Score=178.60 Aligned_cols=159 Identities=21% Similarity=0.336 Sum_probs=134.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..+||+|+|.+|||||+|+.+|.+..+...+..+.|.......+.+++ ++.+|||+| |+ +|+.+..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG-------QE---RFrtit~ 76 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG-------QE---RFRTITS 76 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc-------cH---HHhhhhH
Confidence 4578999999999999999999999887767777888888888888876 689999999 34 8889999
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
+||+.+.+ |++|+|.+...++... ..|+.+ .++|.++|+||||+.+... +..+..+++...+.
T Consensus 77 syYR~ahG---ii~vyDiT~~~SF~~v--~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----v~~~~a~~fa~~~~-- 145 (205)
T KOG0084|consen 77 SYYRGAHG---IIFVYDITKQESFNNV--KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----VSTEEAQEFADELG-- 145 (205)
T ss_pred hhccCCCe---EEEEEEcccHHHhhhH--HHHHHHhhhhccCCCCeEEEeeccccHhhee----cCHHHHHHHHHhcC--
Confidence 99998887 8999999988777664 556653 5689999999999998765 56777777777775
Q ss_pred hcCCCC-EEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 274 FQTAPP-WIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 274 ~~~~~~-~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+ ++++||+++.|+++.|..|...+....
T Consensus 146 ----~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 146 ----IPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred ----CcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 55 999999999999999999998877654
No 14
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=2.2e-24 Score=176.13 Aligned_cols=153 Identities=30% Similarity=0.401 Sum_probs=112.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.||||||||+|+|++.+ ..++..||+|.... .+.+++ .+.++|+||+..-.... ......++|+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s----~ee~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS----EEERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS----HHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC----cHHHHHHHHH
Confidence 379999999999999999999986 56889999998764 344444 89999999974422111 1223566666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.. ...|++++|+|++.. ..+..+..++.+.++|+++|+||+|+..... ...+.+.+.+.++ +|+++
T Consensus 75 ~~-~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g-----~~id~~~Ls~~Lg------~pvi~ 140 (156)
T PF02421_consen 75 LS-EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKG-----IEIDAEKLSERLG------VPVIP 140 (156)
T ss_dssp HH-TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTT-----EEE-HHHHHHHHT------S-EEE
T ss_pred hh-cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcC-----CEECHHHHHHHhC------CCEEE
Confidence 53 446889999999863 3445667777788999999999999887553 3445677777775 89999
Q ss_pred eecCCCCCHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHM 298 (308)
Q Consensus 283 vSA~~g~gi~el~~~i 298 (308)
+||++++|+++|++.|
T Consensus 141 ~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 141 VSARTGEGIDELKDAI 156 (156)
T ss_dssp EBTTTTBTHHHHHHHH
T ss_pred EEeCCCcCHHHHHhhC
Confidence 9999999999999875
No 15
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=183.59 Aligned_cols=162 Identities=25% Similarity=0.297 Sum_probs=125.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
-|+++|+||||||||+|+|++.+ ++++++.|+||+.. ..+..+ .+++++||||+.... ..++. .+.+....
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~K-isIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk--~~l~~---~m~~~a~~ 81 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK--HALGE---LMNKAARS 81 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCc-eEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc--hHHHH---HHHHHHHH
Confidence 59999999999999999999984 69999999999963 233333 389999999998753 22222 25555556
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
....+|+++||+|+..+....+..+...+...+.|+++++||+|..+.. ..+..+.+.+....+ ...++++
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~--------~~l~~~~~~~~~~~~-f~~ivpi 152 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK--------TVLLKLIAFLKKLLP-FKEIVPI 152 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH--------HHHHHHHHHHHhhCC-cceEEEe
Confidence 7778899999999999888888777777776678999999999988643 213444455544433 3589999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~~ 303 (308)
||++|.|++.|.+.+.+.+.
T Consensus 153 SA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred eccccCCHHHHHHHHHHhCC
Confidence 99999999999999988764
No 16
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=1.7e-22 Score=192.79 Aligned_cols=173 Identities=24% Similarity=0.335 Sum_probs=124.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
.+.++|+++|.+|+|||||+|+|++.+. ..+++.+|+|.+.. .+..++ .+.+|||||+.......+..+.+. . .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~-~-~ 246 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS-V-L 246 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH-H-H
Confidence 3457999999999999999999999764 45678888887643 333444 799999999865332111001111 1 1
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--CC
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TA 277 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 277 (308)
..+.....+|++++|+|++++.+..+..+...+...++|+++|+||+|+.+. .+..+++.+.+...+. ..
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~ 318 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD--------EKTREEFKKELRRKLPFLDF 318 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC--------HHHHHHHHHHHHHhcccCCC
Confidence 1112334456799999999999988888888777788999999999999831 2234444445544333 24
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|++++++++.+.++.+.
T Consensus 319 ~~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 319 APIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999887664
No 17
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=8.9e-23 Score=174.96 Aligned_cols=172 Identities=30% Similarity=0.448 Sum_probs=119.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCC-chhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA-PRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+|+|++..+ .+...+++|+....+.++ .+.+|||||+..... .......++.++..|
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~--~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV--RVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3457999999999999999999998753 355677888776655554 799999999743211 111123566677777
Q ss_pred HH-hcCCccEEEEEEeCCCCCC-----------hhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 202 FL-NRSTLVSVFLLIDASIPAK-----------PIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~-~~~~~~~vl~viD~~~~~~-----------~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
+. ....++++++|+|++.... ..+.++..++...++|+++|+||+|+.... .+..+++.+.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-------~~~~~~~~~~ 156 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-------DEVLDEIAER 156 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-------HHHHHHHHHH
Confidence 75 5667788999999975321 123344555556789999999999986432 2234455544
Q ss_pred HHh--hh-cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 270 IQG--FF-QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 270 ~~~--~~-~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++. .+ ....+++++||++| |+++++++|.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 157 LGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred hcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 431 00 01136899999999 9999999999877653
No 18
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.91 E-value=5.2e-23 Score=174.94 Aligned_cols=156 Identities=20% Similarity=0.227 Sum_probs=115.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...||+++|..|||||||+.++....+.....++++.......+.+++ .+.+|||+|.. ++..++..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~l~~~ 74 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG----------RFCTIFRS 74 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHHH
Confidence 457999999999999999999998765444444555544444455555 57899999953 56667777
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
|++.+ +++++|+|.+++.++.+. ..|+. ..+.|++||+||+|+...+. +..++++.+.+..
T Consensus 75 ~~~~a---d~illVfD~t~~~Sf~~~--~~w~~~i~~~~~~~piilVGNK~DL~~~~~----v~~~~~~~~a~~~----- 140 (189)
T cd04121 75 YSRGA---QGIILVYDITNRWSFDGI--DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----VATEQAQAYAERN----- 140 (189)
T ss_pred HhcCC---CEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECccchhccC----CCHHHHHHHHHHc-----
Confidence 77654 459999999988776654 22332 25799999999999976433 3455666666543
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..++++|||++|.||+++|++|.+.+..
T Consensus 141 -~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 141 -GMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred -CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999986654
No 19
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=3.3e-22 Score=192.62 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=121.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+|+|++.++ ..+++.+|+|.+. ..+.+++ .+.+|||||+........-...+..+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 457999999999999999999999764 4577888888764 3344555 78999999986432111100122222111
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--CCC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TAP 278 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 278 (308)
.....++++++|+|++++.+..+..+...+...++|+++|+||+|+.+... ...+.+.+...+. ...
T Consensus 289 --~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~---------~~~~~~~i~~~l~~~~~~ 357 (472)
T PRK03003 289 --AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDR---------RYYLEREIDRELAQVPWA 357 (472)
T ss_pred --HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhH---------HHHHHHHHHHhcccCCCC
Confidence 112345679999999999888888777777778999999999999975321 1122222222111 247
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
+++++||++|.|++++|+.+.+.++.+.+
T Consensus 358 ~~~~~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 358 PRVNISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999887653
No 20
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.90 E-value=1.2e-22 Score=174.32 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=114.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.|+++|..|||||||++++..+.+.....++.+.......+.+++ .+.+|||+|.. +++.++..|++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe----------~~~~l~~~y~~ 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSITSAYYR 71 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch----------hhHHHHHHHhc
Confidence 589999999999999999999876554455555555555566655 57899999943 56678888887
Q ss_pred hcCCccEEEEEEeCCCCCChhHHH-HHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLE-YASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
.+++ +++|+|.++..++.+.. +...+. ..+.|+++|+||+|+...++ +..+..+++.+.+. ...
T Consensus 72 ~ad~---iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----v~~~~~~~~a~~~~-----~~~ 139 (202)
T cd04120 72 SAKG---IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE----ISRQQGEKFAQQIT-----GMR 139 (202)
T ss_pred CCCE---EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc----cCHHHHHHHHHhcC-----CCE
Confidence 6554 89999999887766542 122222 25799999999999975433 34444555544331 267
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
++++||++|+||+++|+++.+.+..
T Consensus 140 ~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 140 FCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987643
No 21
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-22 Score=169.34 Aligned_cols=161 Identities=21% Similarity=0.238 Sum_probs=131.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHH
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
+.+..+||+++|.+|||||+|+-++..+.+......+.|.......+..++ .+.+|||.|. + +|+.+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ-------e---rf~ti 77 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ-------E---RFRTI 77 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccc-------h---hHHHH
Confidence 345678999999999999999999999876555555667777777777776 5889999994 4 78889
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHH-HHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
...||+.+.+ +++|+|.++..++.+.. +.+++. ..++|.++|+||+|+...+. +..+..+.++..++
T Consensus 78 ~~sYyrgA~g---i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----V~~e~ge~lA~e~G-- 148 (207)
T KOG0078|consen 78 TTAYYRGAMG---ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----VSKERGEALAREYG-- 148 (207)
T ss_pred HHHHHhhcCe---eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccc----ccHHHHHHHHHHhC--
Confidence 9999998887 89999999887777642 233332 25899999999999998665 67888888888875
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.||++.|..|.+.+..
T Consensus 149 ----~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 149 ----IKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ----CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999999887764
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.90 E-value=2.1e-22 Score=167.30 Aligned_cols=152 Identities=20% Similarity=0.296 Sum_probs=109.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++++.++.....++.+.......+..++ .+.+|||||.. ++..++..++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE----------RFRAVTRSYY 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHHHh
Confidence 6899999999999999999999866444444444444444445554 57899999943 4555677776
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+.+ +++++|+|.+++.++... ..|+. ..+.|+++|+||+|+..... +..+...++.+..
T Consensus 73 ~~~---~~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 137 (166)
T cd04122 73 RGA---AGALMVYDITRRSTYNHL--SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----VTYEEAKQFADEN------ 137 (166)
T ss_pred cCC---CEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccccC----cCHHHHHHHHHHc------
Confidence 654 459999999987665443 23332 25689999999999976543 2344455554432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|+|++++|.++.+.+
T Consensus 138 ~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 138 GLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999988655
No 23
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.90 E-value=2.8e-22 Score=167.95 Aligned_cols=156 Identities=14% Similarity=0.191 Sum_probs=110.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++.+.++.....++.+... ...+.+++ .+.+|||||.. ++..++..|+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQA----------EFTAMRDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCch----------hhHHHhHHHh
Confidence 5899999999999999999998866433333433222 22334444 58899999953 4556777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-HHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-YASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
... +++++|+|.++..++.... +..++ ...++|+++|+||+|+.+... +..+....+.+.. .
T Consensus 72 ~~~---d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----v~~~~~~~~a~~~------~ 138 (172)
T cd04141 72 RCG---EGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----VTTEEGRNLAREF------N 138 (172)
T ss_pred hcC---CEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----cCHHHHHHHHHHh------C
Confidence 654 4589999999887776542 22222 235799999999999875432 3444555554433 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+++++|||++|.||+++|++|.+.+.+.
T Consensus 139 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 139 CPFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999776543
No 24
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=8.3e-23 Score=188.71 Aligned_cols=158 Identities=27% Similarity=0.340 Sum_probs=123.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+.|+|+|+||||||||.|+|++.+ .+++++.||+|++. ....+.+ .|.++||+|+..... .++... +..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~~l~~~---i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-DELQEL---IREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-eeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-hHHHHH---HHHHHH
Confidence 579999999999999999999975 59999999999985 3344444 799999999864331 222222 444555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....+|+++||+|+..+.+..|.++..++...++|+++|+||+|-.+. ++...+ .+.-. .-.+++
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~--------e~~~~e---fyslG---~g~~~~ 144 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA--------EELAYE---FYSLG---FGEPVP 144 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--------hhhHHH---HHhcC---CCCceE
Confidence 5566677899999999999999999999999888999999999997632 222222 23222 257899
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~ 302 (308)
+||..|.|+.+|++.+.+.+
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred eehhhccCHHHHHHHHHhhc
Confidence 99999999999999999875
No 25
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.5e-21 Score=186.53 Aligned_cols=171 Identities=23% Similarity=0.305 Sum_probs=124.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|+|||||+|+|++.+. ..+++.+|+|++.. .+..++ .+.++||||+.......+..+.+. ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HHH
Confidence 457999999999999999999998764 56788889988753 333444 799999999865332221001111 111
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--CCC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TAP 278 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 278 (308)
.+.....+|++++|+|++.+.+..+..+..++...++|+++|+||||+.+.. ..+++.+.+...+. ...
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~---------~~~~~~~~~~~~l~~~~~~ 319 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEK---------TMEEFKKELRRRLPFLDYA 319 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHH---------HHHHHHHHHHHhcccccCC
Confidence 1223344577999999999999888888888877899999999999997422 23334444433222 347
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+++++||++|.|++++++.+.+.++.+.
T Consensus 320 ~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 320 PIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999887765
No 26
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.90 E-value=5.2e-22 Score=163.75 Aligned_cols=169 Identities=48% Similarity=0.759 Sum_probs=127.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
+|+++|.+|+|||||+|+|++.......+..++.|.....+..+..++++||||+............+......|+....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 58999999999999999999655556677888888777777777799999999987643333333356667777887777
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC
Q 021750 207 TLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 286 (308)
.++++++++|..........++..|+...+.|+++|+||+|+....+ .......+...+.. .....+++++||+
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~-----~~~~~~~~~~~l~~-~~~~~~~~~~Sa~ 154 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSE-----LAKALKEIKKELKL-FEIDPPIILFSSL 154 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHH-----HHHHHHHHHHHHHh-ccCCCceEEEecC
Confidence 77789999999877666666778888888899999999999864322 12222233333321 1234789999999
Q ss_pred CCCCHHHHHHHHHHH
Q 021750 287 TNQGRDEILLHMAQL 301 (308)
Q Consensus 287 ~g~gi~el~~~i~~~ 301 (308)
++.|+.+++++|.++
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999999875
No 27
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=3e-22 Score=165.81 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=105.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++.+.+.....++.+... ...+..++ .+.+|||||.. ++..++..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE----------QFTAMRDLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcc----------cchhHHHHHH
Confidence 5899999999999999999998755433333333222 23344444 46789999953 4555777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HH----HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EY----ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l----~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..+++ +++|+|.++..+..+. ++ .......+.|+++|+||+|+..... +..+..+.+.+.++
T Consensus 71 ~~~d~---~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~------ 137 (164)
T cd04175 71 KNGQG---FVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV----VGKEQGQNLARQWG------ 137 (164)
T ss_pred hhCCE---EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccE----EcHHHHHHHHHHhC------
Confidence 76554 8999999876554432 11 1112235799999999999976432 12333444443332
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|.|++++|+++.+.+.
T Consensus 138 ~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 138 CAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999987654
No 28
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=3.3e-22 Score=171.66 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=111.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+||+++|.+|||||||+++|++..+.....++.+.......+.++ + .+.+|||||.. .+..+++.|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~~ 70 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE----------RFGGMTRVY 70 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch----------hhhhhHHHH
Confidence 489999999999999999999976544444444444444455554 3 57899999952 455577777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-----HHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-----YASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-----l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
+..++ ++++|+|.+++.+..... +..... ..++|+++|+||+|+.+... +..+.++++.+..+
T Consensus 71 ~~~a~---~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~-- 141 (201)
T cd04107 71 YRGAV---GAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----KDGEQMDQFCKENG-- 141 (201)
T ss_pred hCCCC---EEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----cCHHHHHHHHHHcC--
Confidence 76554 589999999876655431 111111 25789999999999974322 24455555554432
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|.|++++|++|.+.+...
T Consensus 142 ---~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 142 ---FIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred ---CceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 25799999999999999999999877554
No 29
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.89 E-value=3.2e-22 Score=166.09 Aligned_cols=153 Identities=17% Similarity=0.241 Sum_probs=106.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++.+.++.....++.+.+.....+..++ .+.+|||||.. ++..++..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~----------~~~~~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE----------RYRTITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHHc
Confidence 5899999999999999999999876444444444444333443333 58899999953 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+. ++++++|+|.++..+.... ..|+. ....|+++|+||+|+.+.+. +..+....+.+.+
T Consensus 72 ~~---~~~~l~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 136 (165)
T cd01865 72 RG---AMGFILMYDITNEESFNAV--QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----VSSERGRQLADQL------ 136 (165)
T ss_pred cC---CcEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCCEEEEEECcccCcccc----cCHHHHHHHHHHc------
Confidence 44 4558999999876544432 33332 14689999999999976432 1234444444433
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|.|++++|+++.+.+.
T Consensus 137 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 137 GFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 257999999999999999999988654
No 30
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.7e-23 Score=169.81 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=123.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+|+|..|||||||+-|+..++|.....++.|..+....+.+++ ++.+|||+|.. +|..+...
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE----------Ry~slapM 73 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE----------RYHSLAPM 73 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcc----------cccccccc
Confidence 346999999999999999999999988666677777777666666665 68899999953 56678888
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
||+.+.. +++|+|.++..++... ..|+.+ .++-+.+|+||+||...++ +..++.+.+.+..+
T Consensus 74 YyRgA~A---AivvYDit~~~SF~~a--K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----V~~~ea~~yAe~~g--- 141 (200)
T KOG0092|consen 74 YYRGANA---AIVVYDITDEESFEKA--KNWVKELQRQASPNIVIALVGNKADLLERRE----VEFEEAQAYAESQG--- 141 (200)
T ss_pred eecCCcE---EEEEEecccHHHHHHH--HHHHHHHHhhCCCCeEEEEecchhhhhhccc----ccHHHHHHHHHhcC---
Confidence 9988876 7999999987776653 445442 3444667999999998654 46667777777654
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..||++||++|.|++++|..|.+.+-.
T Consensus 142 ---ll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 142 ---LLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred ---CEEEEEecccccCHHHHHHHHHHhccC
Confidence 789999999999999999999987643
No 31
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=5.6e-22 Score=164.98 Aligned_cols=154 Identities=21% Similarity=0.290 Sum_probs=110.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||++++.+.++.....++.+.+.....+..++ .+.+|||||.. .+...+..+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE----------RFRTITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHHHH
Confidence 46999999999999999999999876555556666555545555554 57899999943 344455565
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+.. ++++++|+|.+++.+..+. ..|+. ..+.|+++|+||+|+.+... +..+....+.+..
T Consensus 73 ~~~---ad~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 138 (167)
T cd01867 73 YRG---AMGIILVYDITDEKSFENI--RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----VSKEEGEALADEY----- 138 (167)
T ss_pred hCC---CCEEEEEEECcCHHHHHhH--HHHHHHHHHhCCCCCcEEEEEECcccccccC----CCHHHHHHHHHHc-----
Confidence 544 4569999999877655443 23332 25789999999999986432 2333344444333
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|.|++++|+++.+.+.
T Consensus 139 -~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 139 -GIKFLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred -CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 268999999999999999999998764
No 32
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.89 E-value=5.8e-22 Score=162.98 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=104.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|+++++.....++.+... ...+.+++ .+.+|||||.. ++..++..|+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~----------~~~~l~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE----------EYSAMRDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCc----------chHHHHHHHH
Confidence 5899999999999999999998765433333333222 23334444 36789999953 4556777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.++..+..+. .+..+....++|+++|+||+|+.... ........+.+.. .
T Consensus 71 ~~~~---~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~~~~~~------~ 136 (162)
T cd04138 71 RTGE---GFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART-----VSSRQGQDLAKSY------G 136 (162)
T ss_pred hcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce-----ecHHHHHHHHHHh------C
Confidence 6554 48899998876544332 12222223578999999999997532 1333444444333 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++|+++.+.+
T Consensus 137 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 137 IPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999998654
No 33
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.89 E-value=4.4e-22 Score=164.66 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=106.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++.++.....++.+.......+..++ .+.+|||||.. .+..++..++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP----------EYLEVRNEFY 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH----------HHHHHHHHHh
Confidence 3899999999999999999999876554445555444444454443 68899999953 3444666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhcc----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQ----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..+ +++++|+|.+++.+.... ++..+... .+.|+++|+||+|+..... ...+....+.+..
T Consensus 71 ~~~---d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~--- 140 (168)
T cd04119 71 KDT---QGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----VSEDEGRLWAESK--- 140 (168)
T ss_pred ccC---CEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccc----cCHHHHHHHHHHc---
Confidence 544 458999999976554332 11222221 4689999999999974321 1333343433322
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|.|+++++++|.+.+
T Consensus 141 ---~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 141 ---GFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ---CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 26799999999999999999998764
No 34
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.9e-22 Score=164.49 Aligned_cols=155 Identities=21% Similarity=0.296 Sum_probs=131.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+|+.++|+.|||||+|+.+++.+.|.+....+.|.......+.+++ ++.+|||.|. + .|++..+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGq-------e---~frsv~~ 73 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ-------E---SFRSVTR 73 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCc-------H---HHHHHHH
Confidence 4567999999999999999999999998888888888888778888877 6899999994 3 7888999
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.||+.+.+ +++|+|.+...++..+ ..|+. ..+.-+++++||+||...++ +..++.+.|++...
T Consensus 74 syYr~a~G---alLVydit~r~sF~hL--~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----Vs~EEGeaFA~ehg-- 142 (216)
T KOG0098|consen 74 SYYRGAAG---ALLVYDITRRESFNHL--TSWLEDARQHSNENMVIMLIGNKSDLEARRE----VSKEEGEAFAREHG-- 142 (216)
T ss_pred HHhccCcc---eEEEEEccchhhHHHH--HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----ccHHHHHHHHHHcC--
Confidence 99999888 7999999988887664 44543 25788999999999998775 67889999988864
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++||++++|++|.|......+
T Consensus 143 ----LifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 143 ----LIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred ----ceeehhhhhhhhhHHHHHHHHHHHH
Confidence 7789999999999999998876544
No 35
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.89 E-value=4.8e-22 Score=164.93 Aligned_cols=153 Identities=20% Similarity=0.309 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++++.++.....++.+.+.....+..++ .+.+|||||.. ++...+..++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------hHHHHHHHHh
Confidence 6899999999999999999998765443334444444444454444 58899999943 4445666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
..+ +++++|+|.++..+..+. ..|+. ..+.|+++|+||+|+..... +..+....+.+..
T Consensus 73 ~~~---~~ii~v~d~~~~~s~~~l--~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 137 (166)
T cd01869 73 RGA---HGIIIVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----VDYSEAQEFADEL------ 137 (166)
T ss_pred CcC---CEEEEEEECcCHHHHHhH--HHHHHHHHHhCCCCCcEEEEEEChhcccccC----CCHHHHHHHHHHc------
Confidence 544 559999999886554442 22332 14689999999999875432 2334445544433
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|+|++++|++|.+.+.
T Consensus 138 ~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 138 GIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 368999999999999999999988764
No 36
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.89 E-value=3.5e-22 Score=164.82 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=102.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++.+.+.....++.+. .....+..++ .+.+|||||.. ++..++..|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTE----------QFTAMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcc----------ccchHHHHHh
Confidence 58999999999999999999987653322222221 1223344444 46789999953 4445666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.++..+..+. .+...+ ...++|+++|+||+|+...+. +..+....+.+.+ .
T Consensus 71 ~~~~---~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~------~ 137 (163)
T cd04136 71 KNGQ---GFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERV----VSREEGQALARQW------G 137 (163)
T ss_pred hcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce----ecHHHHHHHHHHc------C
Confidence 6544 48999999876655432 122222 225799999999999975332 1233333333322 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++|+++.+.+
T Consensus 138 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 138 CPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999998754
No 37
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=3.5e-22 Score=179.23 Aligned_cols=160 Identities=19% Similarity=0.167 Sum_probs=110.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE-EE-Ee-CCCEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN-HF-RI-NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~-~~-~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+|+++|.||||||||+|+|++.+ .+.+++.+++|+... .+ .. +.++.++||||+.... ..+. ..+.+.+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~-~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~---~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK-ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLN---RLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--chHH---HHHHHHHHH
Confidence 69999999999999999999975 367888999887632 22 22 2379999999986532 1111 112222333
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
....+|++++|+|++...... ..+..++...++|+++|+||+|+.... ...+.+ ..+..... ..+++++
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~--------~~~~~~-~~~~~~~~-~~~v~~i 144 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKD--------KLLPLI-DKYAILED-FKDIVPI 144 (270)
T ss_pred HHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHH--------HHHHHH-HHHHhhcC-CCceEEE
Confidence 345667799999999765554 345556666789999999999997422 112222 22222211 2479999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~~ 303 (308)
||++|.|+++++++|.+.+.
T Consensus 145 SA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 145 SALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred ecCCCCCHHHHHHHHHHhCC
Confidence 99999999999999988654
No 38
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.89 E-value=6.2e-22 Score=164.04 Aligned_cols=153 Identities=24% Similarity=0.327 Sum_probs=108.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|.+|||||||++++++.++.....++.+.+.....+..++ .+.+|||||.. ++..++..+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~ 72 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE----------RYRAITSAY 72 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHHHH
Confidence 46999999999999999999999876545556666555455555554 57899999953 445566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+..+ +++++|+|.++..+..+. ..|+. ..++|+++|+||+|+...+. +..+....+....
T Consensus 73 ~~~~---~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 138 (165)
T cd01868 73 YRGA---VGALLVYDITKKQTFENV--ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTEEAKAFAEKN----- 138 (165)
T ss_pred HCCC---CEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccccc----CCHHHHHHHHHHc-----
Confidence 6543 458999999876555443 23333 13589999999999876432 2333444443321
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|.|+++++++|.+.+
T Consensus 139 -~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 139 -GLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred -CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999988654
No 39
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.89 E-value=4.3e-22 Score=184.49 Aligned_cols=157 Identities=27% Similarity=0.312 Sum_probs=120.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+++++|.||||||||+|+|++.+. +++++.||||+++ ..+.+++ .+.++||+|+++.....|. . -......
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~-AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~---i--GIeRs~~ 292 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDR-AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVER---I--GIERAKK 292 (454)
T ss_pred eEEEECCCCCcHHHHHHHHhcCCc-eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHH---H--HHHHHHH
Confidence 999999999999999999999876 8999999999997 4566677 8999999999875443331 0 1122223
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
....+|+|++|+|++.+....+..+.. ....++|+++|.||+|+..... ...+ .+ ....+++.+
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~---------~~~~--~~----~~~~~~i~i 356 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE---------LESE--KL----ANGDAIISI 356 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccc---------cchh--hc----cCCCceEEE
Confidence 445567799999999987777766555 4456899999999999987532 1121 11 123579999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~~~~ 305 (308)
||++|+|+++|.+.|.+.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999887653
No 40
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.89 E-value=7.5e-22 Score=165.96 Aligned_cols=154 Identities=20% Similarity=0.270 Sum_probs=109.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-------------CCEEEecCCCcccCCCchhhh
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-------------DSWYLVDLPGYGYAAAPRELR 191 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~~~~liDtpG~~~~~~~~~~~ 191 (308)
..||+++|.+|||||||++++++..+.....++.+.+.....+.+. -.+.+|||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence 4699999999999999999999987654444454444433333322 157899999942
Q ss_pred hchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-------cCCCCEEEEeecCCCCCcccCCCCCchhhHH
Q 021750 192 TDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
++..++..+++.+ +++++|+|.++..+..+. ..|+. ..+.|+++|+||+|+.+... +..+..+
T Consensus 75 -~~~~~~~~~~~~~---~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----v~~~~~~ 144 (180)
T cd04127 75 -RFRSLTTAFFRDA---MGFLLIFDLTNEQSFLNV--RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----VSEEQAK 144 (180)
T ss_pred -HHHHHHHHHhCCC---CEEEEEEECCCHHHHHHH--HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----cCHHHHH
Confidence 4556677776544 459999999987665553 22322 24689999999999976432 2344455
Q ss_pred HHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 265 DFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++.+.++ .+++++||++|.|++++|++|.+.+-
T Consensus 145 ~~~~~~~------~~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 145 ALADKYG------IPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred HHHHHcC------CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5555442 68999999999999999999987653
No 41
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=3e-21 Score=194.27 Aligned_cols=172 Identities=26% Similarity=0.306 Sum_probs=121.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+|+|++.+. ..++..+|+|.+. ..+.+++ .+.+|||||+........-...+..+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~- 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT- 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHH-
Confidence 457999999999999999999999864 4567888888764 2344454 7889999998643211110001111111
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCCC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTAP 278 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 278 (308)
......++++++|+|++.+.+..+..+...+...++|+++|+||||+.+.. ..+.+.+.+...+ ....
T Consensus 527 -~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~---------~~~~~~~~~~~~l~~~~~~ 596 (712)
T PRK09518 527 -QAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEF---------RRQRLERLWKTEFDRVTWA 596 (712)
T ss_pred -HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChh---------HHHHHHHHHHHhccCCCCC
Confidence 122344567999999999988888777776666789999999999997532 1233333333322 1346
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
+++++||++|.|++++++.+.+.+.++.+
T Consensus 597 ~ii~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 597 RRVNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999887654
No 42
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.89 E-value=8.1e-22 Score=163.05 Aligned_cols=155 Identities=16% Similarity=0.246 Sum_probs=104.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++++..+.....++.+.. .......++ .+.+|||||.. ++..++..++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~~~~~ 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQE----------EFSAMRDQYM 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcc----------cchHHHHHHH
Confidence 389999999999999999999876533333322211 122333433 57789999954 3445666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-H----HHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-E----YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~----l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|+++..+.... . +.......++|+++|+||+|+..... ...+....+.+.. .
T Consensus 70 ~~~~---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----~~~~~~~~~~~~~------~ 136 (164)
T smart00173 70 RTGE---GFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERV----VSTEEGKELARQW------G 136 (164)
T ss_pred hhCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce----EcHHHHHHHHHHc------C
Confidence 6554 48999999876554432 1 12222235789999999999976432 1233344444333 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.|++++|++|.+.+..
T Consensus 137 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 137 CPFLETSAKERVNVDEAFYDLVREIRK 163 (164)
T ss_pred CEEEEeecCCCCCHHHHHHHHHHHHhh
Confidence 789999999999999999999887653
No 43
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=1e-21 Score=162.94 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=107.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||++++.+..+......+.+.......+.+++ .+.+|||||.. .+..+...+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE----------RFRTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHH
Confidence 46999999999999999999998765443344444444445555555 67899999942 455566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|++++.+.... .+... ....+.|+++|+||+|+...++ +..+....+.+..+ .
T Consensus 73 ~~~~---d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~ 140 (165)
T cd01864 73 YRSA---NGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----VLFEEACTLAEKNG-----M 140 (165)
T ss_pred hccC---CEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccc----cCHHHHHHHHHHcC-----C
Confidence 6544 558999999987655442 11111 1235789999999999976432 22334444444322 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..++++||++|.|++++++++.+.
T Consensus 141 ~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 141 LAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 44
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.88 E-value=1.6e-21 Score=161.07 Aligned_cols=153 Identities=17% Similarity=0.262 Sum_probs=102.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++..+.....++.+.. ......+++ .+.+|||||.. ++..++..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQE----------EFSAMREQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCc----------chhHHHHHHH
Confidence 599999999999999999999875432222222211 122333444 57889999953 4455677777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.++..+.... .+.......+.|+++|+||+|+..... +..+....+.+.. .
T Consensus 72 ~~~~---~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----~~~~~~~~~~~~~------~ 138 (164)
T cd04145 72 RTGE---GFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK----VSREEGQELARKL------K 138 (164)
T ss_pred hhCC---EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce----ecHHHHHHHHHHc------C
Confidence 6554 48999999876554432 122222235789999999999975432 1223333333322 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++|++|.+.+
T Consensus 139 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 139 IPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 6899999999999999999998764
No 45
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.88 E-value=9.1e-22 Score=162.91 Aligned_cols=151 Identities=21% Similarity=0.317 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++++++++.....++.+.......+..++ .+.+|||+|.. ++..++..++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~~~ 70 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE----------RYQTITKQYY 70 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------hHHhhHHHHh
Confidence 3799999999999999999999876444444444444444555554 57899999943 3445666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
... +++++|+|.++..++.+. ..|+. ..+.|+++|+||+|+.+.+. +..++...+.+.++
T Consensus 71 ~~~---~~~i~v~d~~~~~sf~~~--~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----v~~~~~~~~~~~~~----- 136 (161)
T cd04117 71 RRA---QGIFLVYDISSERSYQHI--MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----VGDEQGNKLAKEYG----- 136 (161)
T ss_pred cCC---cEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccccC----CCHHHHHHHHHHcC-----
Confidence 544 458999999987665543 23332 24689999999999976543 23445555554432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
++++++||++|.|++++|++|.++
T Consensus 137 -~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 137 -MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 689999999999999999999865
No 46
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.88 E-value=1.6e-21 Score=162.50 Aligned_cols=155 Identities=21% Similarity=0.313 Sum_probs=110.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+++|.+|||||||++++++.++.....++.+.+.....+..++ .+.+|||||.. ++..+...
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 72 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE----------SFRSITRS 72 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 346999999999999999999999875444455556555545555554 68899999942 44556666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
++..+ +++++|+|++++.+..+. ..|+. ..+.|+++|+||+|+..... +..+..+.+....
T Consensus 73 ~~~~~---d~il~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----~~~~~~~~~~~~~---- 139 (168)
T cd01866 73 YYRGA---AGALLVYDITRRETFNHL--TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----VSYEEGEAFAKEH---- 139 (168)
T ss_pred HhccC---CEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCcEEEEEECcccccccC----CCHHHHHHHHHHc----
Confidence 66543 458999999976555443 34442 24789999999999975332 2334444443332
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++++|++++|.++.+.+.
T Consensus 140 --~~~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 140 --GLIFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999987763
No 47
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.88 E-value=1.3e-21 Score=162.38 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=101.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++++++.+.....++.+.+. ...+..+. .+.+|||||.. ++..+...++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSH----------QFPAMQRLSI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCC----------cchHHHHHHh
Confidence 5899999999999999999999865433333333222 22222222 57899999964 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
..+ +++++|+|.++..+.... .+..++.. .++|+++|+||+|+....+ +..+....+....
T Consensus 71 ~~~---~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~----- 138 (165)
T cd04140 71 SKG---HAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----VSSNEGAACATEW----- 138 (165)
T ss_pred hcC---CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----ecHHHHHHHHHHh-----
Confidence 544 458999999987765443 22222221 5789999999999975332 1223333333222
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.++++++||++|+|++++|++|.++
T Consensus 139 -~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 139 -NCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred -CCcEEEeecCCCCCHHHHHHHHHhc
Confidence 3689999999999999999999764
No 48
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=1.7e-21 Score=179.80 Aligned_cols=162 Identities=21% Similarity=0.262 Sum_probs=114.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..+|+++|.+|||||||+|+|++.+. +.+++.+++|+.. ..+..++ ++.+|||||+.+... .+. ..+.+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~--~l~---~~~~r~~ 125 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG--SLE---KAMVRCA 125 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc--cHH---HHHHHHH
Confidence 35999999999999999999998754 6678888888753 3344444 899999999854221 111 1133333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
......+|++++|+|+.......+..+...+...+.|.++|+||+|+.... ..++.+.+.... ....+|
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~----------~~~~~~~l~~~~-~~~~i~ 194 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY----------LNDIKAFLTENH-PDSLLF 194 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc----------HHHHHHHHHhcC-CCcEEE
Confidence 333456677999999987666655555666666678889999999986421 233334443221 235799
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||++|.|+++++++|.+.+.
T Consensus 195 ~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 195 PISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred EEeccCccCHHHHHHHHHHhCC
Confidence 9999999999999999988653
No 49
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.88 E-value=1.1e-21 Score=162.43 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=104.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++.++.+...++.+.+........++ .+.+|||||.. .+..++..|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE----------RFQTMHASYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHHHh
Confidence 4899999999999999999998765443333333333333334443 57899999953 4555666766
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
..+ +++++|+|.+++.+..+. .+...+.. .++|+++|+||+|+... ..+....+.+. ...+
T Consensus 71 ~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~------~~~~ 134 (161)
T cd04124 71 HKA---HACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-------VTQKKFNFAEK------HNLP 134 (161)
T ss_pred CCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-------HHHHHHHHHHH------cCCe
Confidence 654 458999999877665443 22222222 47999999999998532 11112222221 1368
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++++||++|.|++++|+.+.+.+-++
T Consensus 135 ~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 135 LYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999876554
No 50
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=1.4e-21 Score=166.36 Aligned_cols=156 Identities=13% Similarity=0.216 Sum_probs=105.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+++|+.+.+.....++.+... ......++ .+.+|||||.. ++..+...|+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQE----------EYTALRDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCch----------hhHHHHHHHHH
Confidence 689999999999999999998765332223322221 22333444 47889999953 45556777777
Q ss_pred hcCCccEEEEEEeCCCCCChhHH-HHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL-EYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
.++ ++++|+|.++..++... .+...+. ..+.|+++|+||+|+..... +.......+.+.+
T Consensus 70 ~ad---~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----v~~~~~~~~~~~~------ 136 (190)
T cd04144 70 EGE---GFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----VSTEEGAALARRL------ 136 (190)
T ss_pred hCC---EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----cCHHHHHHHHHHh------
Confidence 655 48999999887655442 1222121 14689999999999975432 2333344443333
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|.|++++|+++.+.+...+
T Consensus 137 ~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~ 166 (190)
T cd04144 137 GCEFIEASAKTNVNVERAFYTLVRALRQQR 166 (190)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 268999999999999999999998776544
No 51
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.88 E-value=1.7e-21 Score=166.96 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=104.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++.++.....++.+.......+.+++ .+.+|||||...... ..+.++......+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~e~~~~~~~~- 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG--TAGQEWMDPRFRG- 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc--cchhHHHHHHHhh-
Confidence 3899999999999999999999876433333332222223344455 477999999753211 1111222222222
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
...+|++++|+|.+++.+.... .+...+. ..++|+++|+||+|+...+. +..+.++.+.+..
T Consensus 78 --~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----~~~~~~~~~~~~~----- 146 (198)
T cd04142 78 --LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----APRHVLSVLVRKS----- 146 (198)
T ss_pred --hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccc----ccHHHHHHHHHHh-----
Confidence 2456779999999987666543 1222221 35689999999999975432 2233333332221
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..++++++||++|.|++++|+.+.+.+-.
T Consensus 147 ~~~~~~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 147 WKCGYLECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred cCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 24789999999999999999998876543
No 52
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.88 E-value=1.9e-21 Score=166.69 Aligned_cols=156 Identities=22% Similarity=0.264 Sum_probs=110.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+++|.+|||||||+++|.+..+...+.++.+.......+..++ .+.+|||||.. .+..++..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 74 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE----------RFRTITST 74 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCch----------hHHHHHHH
Confidence 457999999999999999999999765444445555444444555544 57899999943 34556667
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++..+ +++++|+|+++..+..+. ..|+. ....|++||+||+|+..... +..+....+.+..
T Consensus 75 ~~~~a---~~iilv~D~~~~~s~~~~--~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----~~~~~~~~~~~~~----- 140 (199)
T cd04110 75 YYRGT---HGVIVVYDVTNGESFVNV--KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----VETEDAYKFAGQM----- 140 (199)
T ss_pred HhCCC---cEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECcccccccc----cCHHHHHHHHHHc-----
Confidence 76554 458999999987655443 23332 24689999999999975432 1233344444332
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|++|.+.+-.
T Consensus 141 -~~~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 141 -GISLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred -CCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 2689999999999999999999987654
No 53
>PTZ00369 Ras-like protein; Provisional
Probab=99.88 E-value=2.4e-21 Score=164.67 Aligned_cols=156 Identities=15% Similarity=0.243 Sum_probs=107.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||++++++..+.....++.+.+. ...+.+++ .+.+|||||.. ++..++..|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~~~~ 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE----------EYSAMRDQY 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCc----------cchhhHHHH
Confidence 47999999999999999999998765444444444333 23334444 47789999954 445566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..+ +++++|+|.++..++.+. .+..+....+.|+++|+||+|+.+... +..+....+.+.+
T Consensus 74 ~~~~---d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----i~~~~~~~~~~~~------ 140 (189)
T PTZ00369 74 MRTG---QGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQ----VSTGEGQELAKSF------ 140 (189)
T ss_pred hhcC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc----cCHHHHHHHHHHh------
Confidence 6644 458999999987654443 111222234789999999999865332 2233344443333
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|++|.+.+..
T Consensus 141 ~~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 141 GIPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 2689999999999999999999877654
No 54
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6e-22 Score=162.79 Aligned_cols=153 Identities=18% Similarity=0.250 Sum_probs=125.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|..+|||||||++++...+...+..+.|.......+.+.+ ++.+|||+| || +|+.+...|+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG-------QE---RFrslipsY~ 92 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-------QE---RFRSLIPSYI 92 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEeccc-------HH---HHhhhhhhhc
Confidence 6999999999999999999999988777888888888777777665 689999999 45 8999999999
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+.... ++.|+|.++..++.+. .+|+.. .+.-+++|+||.||.+.++ +..++.+...+.++
T Consensus 93 Rds~v---aviVyDit~~~Sfe~t--~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----vs~eEg~~kAkel~---- 159 (221)
T KOG0094|consen 93 RDSSV---AVIVYDITDRNSFENT--SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----VSIEEGERKAKELN---- 159 (221)
T ss_pred cCCeE---EEEEEeccccchHHHH--HHHHHHHHhccCCCceEEEEEcccccccchhh----hhHHHHHHHHHHhC----
Confidence 88775 7899999988887664 455542 2356789999999998876 45666666666665
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..|+++||+.|+||.++|..|...+.
T Consensus 160 --a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 160 --AEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred --cEEEEecccCCCCHHHHHHHHHHhcc
Confidence 68999999999999999999887654
No 55
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=2e-21 Score=160.18 Aligned_cols=156 Identities=22% Similarity=0.267 Sum_probs=98.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceec-cCCCCceEEE--EEEEeC--CCEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALT-SKTPGKTQCI--NHFRIN--DSWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~-~~~~~~t~~~--~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.|+++|.+|||||||+++|++....... ...+++|... ..+.+. ..+.+|||||.. + +...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~----------~---~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE----------K---FIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH----------H---HHHHH
Confidence 5899999999999999999974311111 1223444432 233333 378999999953 2 22233
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
......+|++++|+|+++.......+...++...+ +|+++|+||+|+..... .....+++.+.+........++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 143 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDW-----LELVEEEIRELLAGTFLADAPI 143 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHH-----HHHHHHHHHHHHHhcCcCCCcE
Confidence 33344567799999998754333333333333334 49999999999975321 1122334444443321124789
Q ss_pred EEeecCCCCCHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~ 300 (308)
+++||++|+|++++++++.+
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 144 FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEeCCCCcCHHHHHHHHhh
Confidence 99999999999999998864
No 56
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=1.3e-21 Score=170.17 Aligned_cols=156 Identities=15% Similarity=0.239 Sum_probs=111.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....+||+++|.+|||||||+++++.+++.....++.|.+.....+..++ .+.+|||||.. .+..++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 79 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLR 79 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCch----------hhhhhh
Confidence 35567999999999999999999998876555666666665544454443 68899999953 344566
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..|+..++ ++++|+|.++..+.... ..|+. ..+.|+++|+||+|+.... +..+.+ .+.+.
T Consensus 80 ~~~~~~~~---~~ilvfD~~~~~s~~~i--~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----v~~~~~-~~~~~---- 144 (219)
T PLN03071 80 DGYYIHGQ---CAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----VKAKQV-TFHRK---- 144 (219)
T ss_pred HHHccccc---EEEEEEeCCCHHHHHHH--HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----CCHHHH-HHHHh----
Confidence 66766554 48999999987666543 23332 2579999999999986432 122222 22221
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+|+++||++|.|++++|++|.+.+.+
T Consensus 145 --~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 145 --KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred --cCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 24789999999999999999999977643
No 57
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.88 E-value=2.4e-21 Score=164.89 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=107.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||+++|.+|||||||+++|+++.+.. .+.++.+.......+..++ .+.+|||||.. ++..+...+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~ 70 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE----------RYEAMSRIY 70 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHhh
Confidence 389999999999999999999986542 2444444444444556655 46799999953 333455555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
+.. ++++++|+|.++..+..+. .+...+. ..+.|+++|+||+|+.........+..+.+..+...+ ..
T Consensus 71 ~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~------~~ 141 (193)
T cd04118 71 YRG---AKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI------KA 141 (193)
T ss_pred cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc------CC
Confidence 543 4569999999877555432 1222222 2468999999999986543211112223344443322 36
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+++++||++|.|+++++++|.+.+...
T Consensus 142 ~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 142 QHFETSSKTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999877543
No 58
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.88 E-value=2e-21 Score=160.61 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=103.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++.+.+.....++.+ ......+..++ .+.+|||||.. +|..++..|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE----------QFASMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcc----------cccchHHHHH
Confidence 5899999999999999999998865433333222 12233444444 47789999953 4445666777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.++..+..+. ++..++ ...++|+++|+||+|+..... +.......+.+.+ .
T Consensus 71 ~~ad---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----~~~~~~~~~~~~~------~ 137 (163)
T cd04176 71 KNGQ---GFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESERE----VSSAEGRALAEEW------G 137 (163)
T ss_pred hhCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCc----cCHHHHHHHHHHh------C
Confidence 6554 48999999987655443 222222 225799999999999865332 1223333443322 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++|+++.+.+
T Consensus 138 ~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 138 CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999998654
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.88 E-value=1.8e-21 Score=160.48 Aligned_cols=151 Identities=25% Similarity=0.304 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC--C---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN--D---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.||+++|.+|+|||||+++++++.+.....++.+.......+.+. + .+.+|||||.. ++..++..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~ 70 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAITKA 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhHHH
Confidence 389999999999999999999976544444444443333334443 2 58999999942 45556666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+++.+ +++++|+|.+++.+.... ..|+. ..+.|+++|+||+|+..... +..+..+.+.+.++
T Consensus 71 ~~~~~---~~~v~v~d~~~~~s~~~l--~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----v~~~~~~~~~~~~~---- 137 (162)
T cd04106 71 YYRGA---QACILVFSTTDRESFEAI--ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----ITNEEAEALAKRLQ---- 137 (162)
T ss_pred HhcCC---CEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEEChhcccccC----CCHHHHHHHHHHcC----
Confidence 66544 458999999876655432 23332 24799999999999976432 23344455544432
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.+++++||++|.|+++++++|.+.
T Consensus 138 --~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 138 --LPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred --CeEEEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999998753
No 60
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.88 E-value=2.2e-21 Score=168.37 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=107.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+||+++|.+|||||||+++|++..+.....++.+.......+.+++ .+.+|||||.. .+..++..|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~----------~~~~l~~~~ 70 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----------IGGKMLDKY 70 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH----------HHHHHHHHH
Confidence 4899999999999999999998765443334444333334444432 57899999942 344567777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+..+ |++++|+|.+++.++.+.+ +...+. ..+.|+++|+||+|+.+.+. +..+..+.+.+..
T Consensus 71 ~~~a---d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----v~~~~~~~~~~~~---- 139 (215)
T cd04109 71 IYGA---HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----VKDDKHARFAQAN---- 139 (215)
T ss_pred hhcC---CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccc----cCHHHHHHHHHHc----
Confidence 6544 5599999999876655431 112221 13467999999999975432 2344455554443
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|+|++++|++|.+.+..
T Consensus 140 --~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 140 --GMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred --CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2679999999999999999999987653
No 61
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.88 E-value=2.3e-21 Score=159.98 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=106.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++|.+.++.....++.+.......+.+++ .+.+|||||.. .+..+.+.++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~~~ 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE----------RFRSVTRSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH----------HHHHhHHHHh
Confidence 4899999999999999999999875444444555444444444444 57899999953 3444566665
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.. ++++++|+|.+++.+.... .+... ....+.|+++|+||+|+..... +..+....+.+.. ..
T Consensus 71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~------~~ 137 (161)
T cd04113 71 RG---AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE----VTFLEASRFAQEN------GL 137 (161)
T ss_pred cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhcc----CCHHHHHHHHHHc------CC
Confidence 54 4559999999987665442 11111 2235899999999999976432 2333444444332 27
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+++++||+++.|++++|+++.+.
T Consensus 138 ~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 138 LFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 89999999999999999999864
No 62
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.87 E-value=3.9e-21 Score=160.70 Aligned_cols=155 Identities=19% Similarity=0.240 Sum_probs=107.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+++++++.+...+.++.+.......+.+++ .+.+|||||.. ++..+...+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE----------RFKCIASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHhhHHHHhc
Confidence 799999999999999999999876555555555444444555554 68899999953 45556666665
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhc-------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLG-------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
.+ +++++|+|+++..+.... ..|+. ....|+++|+||+|+.+..+.. ...+....+.+.+
T Consensus 72 ~a---d~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~--~~~~~~~~~~~~~------ 138 (170)
T cd04108 72 GA---QAIIIVFDLTDVASLEHT--RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA--LMEQDAIKLAAEM------ 138 (170)
T ss_pred CC---CEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCCeEEEEEEChhcCcccccc--ccHHHHHHHHHHc------
Confidence 44 459999999875544432 22332 1236799999999986543200 1223333333332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|+.|.+++.+
T Consensus 139 ~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 139 QAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2679999999999999999999988765
No 63
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=4.2e-21 Score=166.15 Aligned_cols=156 Identities=23% Similarity=0.304 Sum_probs=109.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+||+++|.+|||||||+++|++..+.....++.+.......+.+. + .+.+|||||.. .+..+...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 71 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE----------RFRSITRS 71 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcch----------hHHHHHHH
Confidence 3699999999999999999999976543333344433333344442 2 57899999953 45556667
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
|+..+ +++++|+|.+++.+..+. ..|+. ....|+++|+||+|+..... +..+..+.+.+.++
T Consensus 72 ~~~~~---d~iilv~D~~~~~Sf~~l--~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----v~~~~~~~~~~~~~-- 140 (211)
T cd04111 72 YYRNS---VGVLLVFDITNRESFEHV--HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----VTREEAEKLAKDLG-- 140 (211)
T ss_pred HhcCC---cEEEEEEECCCHHHHHHH--HHHHHHHHHhcCCCCCeEEEEEEccccccccc----cCHHHHHHHHHHhC--
Confidence 66554 458999999987655543 22222 24577899999999976432 34455555554432
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|+|++++|++|.+.+.+.
T Consensus 141 ----~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 141 ----MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ----CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999876544
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.87 E-value=3.7e-21 Score=158.49 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=103.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++.++.....+..+.......+.+++ .+.+|||||.. .+..++..++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~~~ 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE----------RFRSLIPSYI 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHHHh
Confidence 3899999999999999999999865332233333333344454544 58899999943 4445666665
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
..+ +++++|+|.+++.+..+. .+..+... .+.|+++|+||+|+..... ...+....+.+.. ..
T Consensus 71 ~~~---~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----~~~~~~~~~~~~~------~~ 137 (161)
T cd01861 71 RDS---SVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----VSTEEGEKKAKEL------NA 137 (161)
T ss_pred ccC---CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCc----cCHHHHHHHHHHh------CC
Confidence 544 459999999887655442 11122222 3599999999999964322 1333344443332 27
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+++++||+++.|+++++++|.+.
T Consensus 138 ~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 138 MFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHh
Confidence 89999999999999999999875
No 65
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.87 E-value=5.9e-22 Score=157.65 Aligned_cols=155 Identities=23% Similarity=0.263 Sum_probs=126.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||.++|.+|||||||+-+++.+.+......+.|....+..+.+++ ++.+|||+| +| +|+.++..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG-------qE---rFRtLTpS 79 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG-------QE---RFRTLTPS 79 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc-------hH---hhhccCHh
Confidence 347999999999999999999999876555555577777788888876 689999999 44 78889999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
||+.+.+ +++|+|.+...++..+ ..|+.+ .++-.++|+||+|...++. +..++.-.+++..+
T Consensus 80 yyRgaqG---iIlVYDVT~Rdtf~kL--d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----V~reEG~kfAr~h~-- 148 (209)
T KOG0080|consen 80 YYRGAQG---IILVYDVTSRDTFVKL--DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----VDREEGLKFARKHR-- 148 (209)
T ss_pred HhccCce---eEEEEEccchhhHHhH--HHHHHHHHhhcCCccHhHhhhcccccchhccc----ccHHHHHHHHHhhC--
Confidence 9999888 8999999988877664 445443 5666789999999775544 56777777877776
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+-++++||++.+|++..|+.+.+.+-
T Consensus 149 ----~LFiE~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 149 ----CLFIECSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred ----cEEEEcchhhhccHHHHHHHHHHHHh
Confidence 77999999999999999998887653
No 66
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=4.4e-21 Score=159.29 Aligned_cols=159 Identities=25% Similarity=0.338 Sum_probs=99.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+|+|++..+ ...+.+++|.... .+..++ .+.+|||||+..... .+ ...+.......+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~-~~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP--EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL-EE-RNTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccc-cC-CchHHHHHHHHH
Confidence 5899999999999999999999754 2344555554432 333333 799999999843211 11 001100011111
Q ss_pred HhcCCccEEEEEEeCCCCCCh--hH-HHHHHHhccC--CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKP--ID-LEYASWLGQN--QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~--~~-~~l~~~~~~~--~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.. ..+++++|+|+++..+. .+ .++...+... +.|+++|+||+|+..... .....+... . ..
T Consensus 77 ~~--~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~---------~~~~~~~~~-~--~~ 142 (168)
T cd01897 77 AH--LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFED---------LSEIEEEEE-L--EG 142 (168)
T ss_pred Hh--ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhh---------HHHHHHhhh-h--cc
Confidence 11 13568999999876442 11 2333344333 799999999999975332 111111111 1 23
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++++++.+.+
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 143 EEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred CceEEEEecccCCHHHHHHHHHHHh
Confidence 7899999999999999999998765
No 67
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.2e-20 Score=156.51 Aligned_cols=167 Identities=24% Similarity=0.349 Sum_probs=113.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|+|||||+|+|++... ......++++... ..+..++ .+.+|||||+............+. . ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~-~-~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEER-VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS-V-LRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc-eeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH-H-HHH
Confidence 46899999999999999999998753 3345556665543 3344444 689999999864321111001111 0 111
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--CCCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TAPP 279 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 279 (308)
+.....++++++|+|++.+.+.....+...+...++|+++|+||+|+.+.. ....+.+.+.+.+.+. ...+
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 151 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-------SKTMKEFKKEIRRKLPFLDYAP 151 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-------HHHHHHHHHHHHhhcccccCCc
Confidence 223345677999999998877766666666666789999999999997642 1224444444443332 2378
Q ss_pred EEEeecCCCCCHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~ 301 (308)
++++||++++|++++++++.++
T Consensus 152 ~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 152 IVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eEEEeccCCCCHHHHHHHHHHh
Confidence 9999999999999999998875
No 68
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=3.8e-21 Score=162.84 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=107.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||+++|.+|||||||+++|.++.+.....++.+... ...+... + .+.+|||||.. ++..+...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~ 69 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENY-VTNIQGPNGKIIELALWDTAGQE----------EYDRLRPLS 69 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeee-EEEEEecCCcEEEEEEEECCCch----------hHHHHHHHh
Confidence 3899999999999999999999865433322222222 1223332 2 57899999953 344455555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+. .++++++|+|.++..++.+.. ..|+. ..+.|+++|+||+|+.........+..+..+++....+
T Consensus 70 ~~---~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~----- 140 (187)
T cd04132 70 YP---DVDVLLICYAVDNPTSLDNVE-DKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG----- 140 (187)
T ss_pred CC---CCCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC-----
Confidence 44 445699999999877665542 12321 24789999999999976432222233444555544432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|.|++++|+.+.+.+....
T Consensus 141 ~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 141 AFAYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred CcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 137999999999999999999998776544
No 69
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.87 E-value=4.1e-21 Score=160.30 Aligned_cols=153 Identities=12% Similarity=0.157 Sum_probs=101.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.++|+++|.+|||||||+++|..+++. .+.++.+.+ ...+...+ .+.+|||||.. ++..++..++.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~--~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~ 75 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFN--VETVTYKNVKFNVWDVGGQD----------KIRPLWRHYYT 75 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccc--eEEEEECCEEEEEEECCCCH----------HHHHHHHHHhc
Confidence 469999999999999999999876552 233333333 23333443 79999999953 45556777776
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.++ ++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.+.. ..+++++..+.. .......
T Consensus 76 ~a~---~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~~~~i~~~~~~~-~~~~~~~ 145 (168)
T cd04149 76 GTQ---GLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------KPHEIQEKLGLT-RIRDRNW 145 (168)
T ss_pred cCC---EEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------CHHHHHHHcCCC-ccCCCcE
Confidence 544 59999999986554332 22233322 468999999999986531 223333322111 1111234
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
+++++||++|+|++++|+||.+
T Consensus 146 ~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 146 YVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEEeeCCCCCChHHHHHHHhc
Confidence 7899999999999999999864
No 70
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=5.4e-21 Score=162.22 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=108.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|.+..+...+.++.+.+.....+.+++ .+.+|||||.. .+...+..++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~----------~~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE----------RFRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHhhHHHHc
Confidence 4899999999999999999999876433455555555445555554 47799999943 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
.. ++++++|+|.+++.+..+. ..|+. ....|+++|+||+|+.+... +..+....+.+..
T Consensus 71 ~~---~d~iilv~d~~~~~s~~~i--~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----v~~~~~~~~~~~~------ 135 (188)
T cd04125 71 RG---AHGYLLVYDVTDQESFENL--KFWINEINRYARENVIKVIVANKSDLVNNKV----VDSNIAKSFCDSL------ 135 (188)
T ss_pred cC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECCCCccccc----CCHHHHHHHHHHc------
Confidence 44 4559999999987655443 22332 24589999999999875432 2333344443332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|.|++++|+++.+.+...
T Consensus 136 ~~~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 136 NIPFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 36899999999999999999998877543
No 71
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.87 E-value=3e-21 Score=160.67 Aligned_cols=152 Identities=16% Similarity=0.232 Sum_probs=102.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++...+.....++.+.......+..++ .+.+|||||... +..+...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK----------FGGLRDGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChh----------hccccHHHh
Confidence 4899999999999999999998765444444444443333333333 588999999642 222444555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.. ++++++|+|.++..+.... ..|+.. .++|+++|+||+|+..... . .....+.+. ..
T Consensus 71 ~~---~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~-----~-~~~~~~~~~------~~ 133 (166)
T cd00877 71 IG---GQCAIIMFDVTSRVTYKNV--PNWHRDLVRVCGNIPIVLCGNKVDIKDRKV-----K-AKQITFHRK------KN 133 (166)
T ss_pred cC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCcEEEEEEchhcccccC-----C-HHHHHHHHH------cC
Confidence 43 4569999999987665543 223221 2799999999999973221 1 112222211 24
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|+|++++|++|.+.+.+
T Consensus 134 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 134 LQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 789999999999999999999977643
No 72
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.87 E-value=3e-21 Score=162.27 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=110.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+.+++.+.+.....++.+.... ..+..++ ++.+|||+|.. ++..+...|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~----------~~~~~~~~~~ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQE----------DYNRLRPLSY 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCc----------cccccchhhc
Confidence 48999999999999999999998775445555544332 2344444 68899999953 3444555666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCccc------CCCCCchhhHHHHHHHHHh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKK------NGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~ 272 (308)
+.+ +++++|+|.++..++.+. .+...+. ..+.|+++|+||+|+.+... ....+..++.+.+.+..+
T Consensus 71 ~~a---~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~- 146 (176)
T cd04133 71 RGA---DVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG- 146 (176)
T ss_pred CCC---cEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC-
Confidence 544 458999999988887663 1222222 25799999999999965421 011234555666655443
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++|||++|.||+++|+.+.+.+
T Consensus 147 ----~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 147 ----AAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ----CCEEEECCCCcccCHHHHHHHHHHHH
Confidence 13699999999999999999999865
No 73
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.87 E-value=4.1e-21 Score=162.35 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=111.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...||+++|.+|||||||++++..+.+...+.++.+... ...+.+++ .+.+|||+|.. ++..+...
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e----------~~~~~~~~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSP----------YYDNVRPL 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCch----------hhHhhhhh
Confidence 346999999999999999999999876544444444322 23344444 58899999942 45556666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHH
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQE 268 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~ 268 (308)
|++.++ ++++|+|.++..++.+. .+...+. ..+.|+++|+||+|+.+... ....+..++.+++++
T Consensus 73 ~~~~ad---~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 149 (182)
T cd04172 73 SYPDSD---AVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK 149 (182)
T ss_pred hcCCCC---EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH
Confidence 665544 48999999988776653 2222222 14689999999999864210 112246667777776
Q ss_pred HHHhhhcCCCCEEEeecCCCCC-HHHHHHHHHHH
Q 021750 269 LIQGFFQTAPPWIMTSSVTNQG-RDEILLHMAQL 301 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~g-i~el~~~i~~~ 301 (308)
.++ ..+|++|||++|+| |+++|+.+.+.
T Consensus 150 ~~~-----~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 150 QIG-----AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HcC-----CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 664 14899999999998 99999998874
No 74
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=6.4e-21 Score=162.33 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||+++|.+|||||||++++.+.++.. ...++.+.+.....+.+++ .+.+|||||.. ++......+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 70 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSVTHAY 70 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHhhHHH
Confidence 389999999999999999999876532 2222333333233344544 68899999942 344455555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+.. ++++++|+|.++..+..+. .+...+. ..++|+++|+||+|+...+. +..+..+.+.+.. .
T Consensus 71 ~~~---ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----~~~~~~~~l~~~~------~ 137 (191)
T cd04112 71 YRD---AHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERV----VKREDGERLAKEY------G 137 (191)
T ss_pred ccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccc----cCHHHHHHHHHHc------C
Confidence 544 4569999999887655432 1111111 24789999999999975332 2334444444332 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|+|++++|++|.+.+...
T Consensus 138 ~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 138 VPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999887654
No 75
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=5.2e-21 Score=163.02 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=108.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-----eeccCCCCceEEEE--EEEe---------------CCCEEEecCCCccc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-----ALTSKTPGKTQCIN--HFRI---------------NDSWYLVDLPGYGY 183 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-----~~~~~~~~~t~~~~--~~~~---------------~~~~~liDtpG~~~ 183 (308)
.+|+++|.+|+|||||+++|++.... ......+|+|.... .+.+ +..+.+|||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 37999999999999999999973110 11122334544322 2222 2378999999963
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhH
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENL 263 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~ 263 (308)
.+++.++.....+|++++|+|++.+......+...+....++|+++|+||+|+..... .....
T Consensus 80 ------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~-----~~~~~ 142 (192)
T cd01889 80 ------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEE-----RERKI 142 (192)
T ss_pred ------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHH-----HHHHH
Confidence 2566776666667889999999987665554434444445789999999999974321 22234
Q ss_pred HHHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 264 NDFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 264 ~~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++.+.+...+ ....+++++||++|+|+++|++++.+.+
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 143 EKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 44444433322 2347899999999999999999998764
No 76
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.87 E-value=8.7e-21 Score=157.24 Aligned_cols=157 Identities=22% Similarity=0.279 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEe----CCCEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRI----NDSWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
|.|+++|.+|+|||||+++|++.++.. ...+++|... ..+.. +..+.+|||||.. .+..++.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE----------AFTNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc--ccCCCeEEeeccEEEecccCCcceEEEEeCCCcH----------HHHHHHH
Confidence 469999999999999999999875432 2333444433 22333 2379999999953 2333444
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh---hhcC
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG---FFQT 276 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 276 (308)
.++. .+|++++|+|++++......+...++...++|+++|+||+|+.... .....+.+.+.... ....
T Consensus 69 ~~~~---~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~ 139 (168)
T cd01887 69 RGAS---LTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN------PERVKNELSELGLQGEDEWGG 139 (168)
T ss_pred HHHh---hcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc------HHHHHHHHHHhhccccccccC
Confidence 4443 4456999999998765555555566666789999999999987432 11111122111110 1123
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|+|+++++++|.+..+
T Consensus 140 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 140 DVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 478999999999999999999988764
No 77
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.87 E-value=6.3e-21 Score=157.34 Aligned_cols=153 Identities=24% Similarity=0.313 Sum_probs=106.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++.+.++.....++.+.......+..++ .+.+||+||.. .+......++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~ 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRSITSSYY 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHHh
Confidence 4899999999999999999998765333333444433344455544 57899999943 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
.. +|++++|+|.+++.+.... ..|+.. .++|+++|+||+|+..... ...+..+.+.+..
T Consensus 71 ~~---~d~~ilv~d~~~~~s~~~~--~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----~~~~~~~~~~~~~------ 135 (164)
T smart00175 71 RG---AVGALLVYDITNRESFENL--KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----VSREEAEAFAEEH------ 135 (164)
T ss_pred CC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEEchhcccccC----CCHHHHHHHHHHc------
Confidence 43 4569999999886665443 233321 5799999999999875332 1334444443322
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|+|+++++++|.+.+.
T Consensus 136 ~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 136 GLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 367999999999999999999998764
No 78
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.87 E-value=8.4e-21 Score=160.37 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=107.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
....||+++|.+|||||||++++...++. ...++.| .....+..++ .+.+||+||.. +++.++..|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g--~~~~~~~~~~~~~~i~D~~Gq~----------~~~~~~~~~ 81 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVWDVGGQD----------KIRPLWRHY 81 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcc--eeEEEEEECCEEEEEEECCCCH----------HHHHHHHHH
Confidence 33469999999999999999999876542 2333333 3333444444 78999999942 566688888
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+..++ ++++|+|+++..+..+. ++..++.. .++|++||+||+|+.+... .+++.+.++-. .
T Consensus 82 ~~~a~---~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---------~~~~~~~l~l~~~~ 149 (181)
T PLN00223 82 FQNTQ---GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLR 149 (181)
T ss_pred hccCC---EEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---------HHHHHHHhCccccC
Confidence 86654 58999999976554432 33333332 4789999999999875431 34444444311 0
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+.++++||++|+|++++|+||.+.+..
T Consensus 150 ~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 112346689999999999999999887654
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.87 E-value=6.3e-21 Score=157.21 Aligned_cols=152 Identities=23% Similarity=0.260 Sum_probs=106.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+......++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~ 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE----------RFRTLTSSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHHHh
Confidence 4899999999999999999999865444566666665555555543 58899999953 2333444544
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-----HHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-----YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-----l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
. .++++++|+|.++..+..... +..+....+.|+++|+||+|+..... ..+....+.+.. .
T Consensus 71 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~-----~~~~~~~~~~~~------~ 136 (161)
T cd01863 71 R---GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREV-----TREEGLKFARKH------N 136 (161)
T ss_pred C---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccccc-----CHHHHHHHHHHc------C
Confidence 3 345699999998766554421 11222346799999999999974321 233344444332 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
++++++||++|+|++++++.+.+.
T Consensus 137 ~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 137 MLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Confidence 789999999999999999998764
No 80
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.87 E-value=2.3e-21 Score=161.19 Aligned_cols=157 Identities=25% Similarity=0.310 Sum_probs=101.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC-C-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN-D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+|+++|.+|||||||+|+|.+.+. .+...+++|... ..+.++ . .+.+|||||+.+..... ..+...++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~ 73 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL 73 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence 699999999999999999998642 344555555432 233333 2 78999999985422111 11334444
Q ss_pred HhcCCccEEEEEEeCCCC-CChhHH-HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 203 LNRSTLVSVFLLIDASIP-AKPIDL-EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~-~~~~~~-~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.....++++++|+|++++ ...... .+...+. ..++|+++|+||+|+.+... ..+. ........
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~---~~~~~~~~-- 143 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----LFEL---LKELLKEL-- 143 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-----hHHH---HHHHHhhC--
Confidence 444456779999999987 333332 1222221 13689999999999875432 1121 22222211
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...+++++||+++.|+++++++|.++
T Consensus 144 ~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 144 WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 23689999999999999999999875
No 81
>PLN03110 Rab GTPase; Provisional
Probab=99.87 E-value=8.9e-21 Score=164.69 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=112.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+++|++|||||||+++|.+..+.....++.+.......+.+++ .+.+|||||.. ++..++..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~----------~~~~~~~~ 80 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAITSA 80 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 456999999999999999999999875444445555554445555555 68899999943 45567777
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+++.+ +++++|+|.++..++... ..|+. ..+.|+++|+||+|+..... +..+....+.+..
T Consensus 81 ~~~~~---~~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----~~~~~~~~l~~~~---- 147 (216)
T PLN03110 81 YYRGA---VGALLVYDITKRQTFDNV--QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----VAEEDGQALAEKE---- 147 (216)
T ss_pred HhCCC---CEEEEEEECCChHHHHHH--HHHHHHHHHhCCCCCeEEEEEEChhcccccC----CCHHHHHHHHHHc----
Confidence 76644 458999999887665443 33332 25799999999999865432 2344444444322
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|++|.+.+.+
T Consensus 148 --~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 148 --GLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999887755
No 82
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.87 E-value=5.6e-21 Score=161.62 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=103.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe-C--C-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI-N--D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~-~--~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||+++|.+|||||||+++++...+.. ..++.|.+.....+.. + + .+.+|||||.. ++..++..+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~~ 72 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE----------KLRPLWKSY 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcH----------hHHHHHHHH
Confidence 589999999999999999999876532 2233333332222322 1 2 68999999952 455566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc-
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ- 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~- 275 (308)
+..+ +++++|+|++++.+.... ++..+....++|+++|+||+|+.... ..+.++.+... .....
T Consensus 73 ~~~~---d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------~~~~~~~~~~~-~~~~~~ 142 (183)
T cd04152 73 TRCT---DGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL------SVSEVEKLLAL-HELSAS 142 (183)
T ss_pred hccC---CEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC------CHHHHHHHhCc-cccCCC
Confidence 5544 458999999876443322 12223334679999999999986432 22223333221 11111
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
...+++++||++|+|+++++++|.+.+.+.+
T Consensus 143 ~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 143 TPWHVQPACAIIGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred CceEEEEeecccCCCHHHHHHHHHHHHHHHH
Confidence 1246899999999999999999998876544
No 83
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.87 E-value=5.5e-21 Score=159.20 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...||+++|.+|||||||++++++..+.....++.+.......+..++ .+.+|||||.. ++..++..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 73 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE----------RFRSLRTP 73 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhHHH
Confidence 456999999999999999999998766444444444443334444544 57889999942 45556777
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
++..+ +++++|+|.++..+.... ++..... ..+.|+++|+||+|+.+.. +..++++++.+..+
T Consensus 74 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~- 144 (170)
T cd04116 74 FYRGS---DCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-----VSTEEAQAWCRENG- 144 (170)
T ss_pred HhcCC---CEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-----cCHHHHHHHHHHCC-
Confidence 76554 458899999876554432 1111111 2468999999999987322 23444555544332
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..+++++||++|.|++++|+++.+.
T Consensus 145 ----~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 145 ----DYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ----CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 2579999999999999999998764
No 84
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.87 E-value=1.1e-20 Score=157.33 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=106.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++.+..+......+.+.+.....+.+++ .+.+||+||.. .+..++..++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~ 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE----------RFQSLGVAFY 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHhHHHHHh
Confidence 4899999999999999999999765433344444444444455554 46799999953 3444566665
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-----HHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-----YASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-----l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+.+ +++++|+|++++.+..... +..... ..++|+++|+||+|+..... ...+..+.+.+..+
T Consensus 71 ~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~--- 140 (172)
T cd01862 71 RGA---DCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----VSTKKAQQWCQSNG--- 140 (172)
T ss_pred cCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccc----cCHHHHHHHHHHcC---
Confidence 444 4589999998766543321 111111 13799999999999985321 13334444433322
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|.|++++++++.+.+-+.
T Consensus 141 --~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 141 --NIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred --CceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 36899999999999999999999876554
No 85
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.86 E-value=4.7e-21 Score=159.90 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=101.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
||+++|.+|||||||+++|++..+. ...|+.......+.+++ .+.+|||||.. .+...+..++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~---~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~----------~~~~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM---QPIPTIGFNVETVEYKNLKFTIWDVGGKH----------KLRPLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC---CcCCcCceeEEEEEECCEEEEEEECCCCh----------hcchHHHHHhccC
Confidence 6899999999999999999987542 22333333333444444 78999999964 2334666666554
Q ss_pred CCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 206 STLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
+++++|+|.++..+..+. .+...+. ..+.|+++|+||+|+.... ..+.+..+.+..+........+
T Consensus 68 ---d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~ 138 (169)
T cd04158 68 ---QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL------SVEEMTELLSLHKLCCGRSWYI 138 (169)
T ss_pred ---CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC------CHHHHHHHhCCccccCCCcEEE
Confidence 458999999876544332 2222322 1358999999999986432 2333333322111000112368
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++||++|.|++++|+||.+.+..
T Consensus 139 ~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 139 QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999876543
No 86
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.86 E-value=9.8e-21 Score=157.98 Aligned_cols=154 Identities=25% Similarity=0.350 Sum_probs=106.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchH-HHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWD-KFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~-~~~~~ 200 (308)
..||+++|.+|||||||+++++...+.....++.+.......+.+++ .+.+|||||.. .+. .++..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 71 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE----------RFRKSMVQH 71 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhhHHH
Confidence 36899999999999999999998765433444444433334455544 58899999953 232 24555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHh-------ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWL-------GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~-------~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
++.. ++++++|+|.+++.+.... ..|+ ...++|+++|+||+|+..... +..+..+++.+..
T Consensus 72 ~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~--- 139 (170)
T cd04115 72 YYRN---VHAVVFVYDVTNMASFHSL--PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----VPTDLAQRFADAH--- 139 (170)
T ss_pred hhcC---CCEEEEEEECCCHHHHHhH--HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----CCHHHHHHHHHHc---
Confidence 5543 4558999999987666553 2232 225799999999999876443 2334444454333
Q ss_pred hcCCCCEEEeecCC---CCCHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVT---NQGRDEILLHMAQLRN 303 (308)
Q Consensus 274 ~~~~~~~~~vSA~~---g~gi~el~~~i~~~~~ 303 (308)
.++++++||++ +.|++++|..+.+.++
T Consensus 140 ---~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 140 ---SMPLFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred ---CCcEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 27899999999 8999999999887653
No 87
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.86 E-value=4.4e-21 Score=158.59 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=98.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
||+++|.+|||||||++++..+++.. ..++.|. ....+.... .+.+|||||.. ++..++..|+..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~--~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKNISFTVWDVGGQD----------KIRPLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCc--ceEEEEECCEEEEEEECCCCH----------hHHHHHHHHhcCC
Confidence 89999999999999999998765532 2233332 233344444 78999999953 4555777777665
Q ss_pred CCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hhhcCCC
Q 021750 206 STLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GFFQTAP 278 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 278 (308)
+ ++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.+.. . .+++.+.+. .......
T Consensus 69 d---~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---~~~i~~~~~~~~~~~~~~ 136 (159)
T cd04150 69 Q---GLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------S---AAEVTDKLGLHSLRNRNW 136 (159)
T ss_pred C---EEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------C---HHHHHHHhCccccCCCCE
Confidence 4 59999999876544332 22333222 368999999999996532 1 122222221 1112234
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.++++||++|+|++++|++|.+
T Consensus 137 ~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 137 YIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEEeeCCCCCCHHHHHHHHhc
Confidence 6789999999999999999864
No 88
>PLN03118 Rab family protein; Provisional
Probab=99.86 E-value=1.6e-20 Score=162.38 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=110.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+++|.+|||||||+++|++..+ ....++.+.+.....+.+++ .+.+|||||.. ++..++..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~ 81 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE----------RFRTLTSS 81 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCch----------hhHHHHHH
Confidence 357999999999999999999998754 44555556555555555554 57899999953 45556667
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+++.. +++++|+|.++..++.+.. +...+. ..+.|+++|+||+|+..... +..+....+....
T Consensus 82 ~~~~~---d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----i~~~~~~~~~~~~---- 150 (211)
T PLN03118 82 YYRNA---QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----VSREEGMALAKEH---- 150 (211)
T ss_pred HHhcC---CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----cCHHHHHHHHHHc----
Confidence 76654 4589999999876655532 111121 24679999999999975432 1223333333322
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++++++||++|.|++++|++|.+.+..
T Consensus 151 --~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 151 --GCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3679999999999999999999977643
No 89
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.86 E-value=8.7e-21 Score=158.76 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=103.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
+...++|+++|.+|||||||+++|.+... ..+.++.+. ....+.+++ .+.+|||||.. .++.++..
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 77 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEGYKLNIWDVGGQK----------TLRPYWRN 77 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 34457999999999999999999998743 334444442 233344444 68999999953 34456666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++.. ++++++|+|+++..+..+. .+..++. ..++|+++|+||+|+.+.. ..+.++.+.+... ...
T Consensus 78 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~~~~~~~~~~~~~-~~~ 147 (173)
T cd04154 78 YFES---TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL------SEEEIREALELDK-ISS 147 (173)
T ss_pred HhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC------CHHHHHHHhCccc-cCC
Confidence 6654 4558999999886544332 2233322 2579999999999997532 2222333222110 011
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
..++++++||++|.|++++|+++.+
T Consensus 148 ~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 148 HHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CceEEEeccCCCCcCHHHHHHHHhc
Confidence 2468999999999999999999864
No 90
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.86 E-value=1.2e-20 Score=155.76 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=106.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|++|||||||++++++.++.....++.+.......+.+++ .+.+||+||.. ++...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE----------RYRSLAPMYY 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHHHHh
Confidence 5899999999999999999999876444555666555444555554 68899999942 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
..+ +++++|+|++++.+.... .+...+. ....|+++|+||+|+..... ...+....+.... ..
T Consensus 72 ~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~------~~ 138 (163)
T cd01860 72 RGA---AAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQ----VSTEEAQEYADEN------GL 138 (163)
T ss_pred ccC---CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCc----CCHHHHHHHHHHc------CC
Confidence 443 559999999876554332 1222221 24688999999999875332 1233333333322 26
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++++||++|.|+++++++|.+.+
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 139 LFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 799999999999999999998764
No 91
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=8e-21 Score=160.08 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=107.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++.++.+...+.++.+... ...+.+++ .+.+|||+|.. .+..+...|+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~----------~~~~~~~~~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSP----------YYDNVRPLCY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCch----------hhhhcchhhc
Confidence 5899999999999999999999876444334433222 22344444 58899999953 3344555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~ 270 (308)
+.+ +++++|+|.+++.++.+. .+...+. ..+.|+++|+||+|+.+... ....+..++.+++.+.+
T Consensus 71 ~~a---~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 147 (178)
T cd04131 71 PDS---DAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred CCC---CEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 444 458999999988777652 2222222 25789999999999964210 01124566677776665
Q ss_pred HhhhcCCCCEEEeecCCCCC-HHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQG-RDEILLHMAQL 301 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~g-i~el~~~i~~~ 301 (308)
+ ..+|+++||++|+| |+++|..+.+.
T Consensus 148 ~-----~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 148 G-----AEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred C-----CCEEEECccCcCCcCHHHHHHHHHHH
Confidence 4 13799999999995 99999999884
No 92
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.86 E-value=8.7e-21 Score=156.33 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=99.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCc-ceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKK-LALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
+|+++|.+|||||||+++|++..+ ...+.++.+.+. ..+..++ .+.+|||||.. ++..++..|+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~~ 68 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGNLSFTAFDMSGQG----------KYRGLWEHYYKN 68 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECCEEEEEEECCCCH----------hhHHHHHHHHcc
Confidence 589999999999999999998642 334455555433 2333344 68999999953 455567777654
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hc
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQ 275 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 275 (308)
++++++|+|++++.+.... .+..++. ..++|+++|+||+|+..... .+++.+.++.. ..
T Consensus 69 ---~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---------~~~~~~~l~~~~~~~ 136 (162)
T cd04157 69 ---IQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---------AVKITQLLGLENIKD 136 (162)
T ss_pred ---CCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC---------HHHHHHHhCCccccC
Confidence 4558999999976544221 2222222 24799999999999975321 12222222110 11
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
...+++++||++|.|++++|++|.+
T Consensus 137 ~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 137 KPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred ceEEEEEeeCCCCCchHHHHHHHhc
Confidence 1246899999999999999999864
No 93
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.86 E-value=6.9e-21 Score=160.01 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=105.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++..+.+...+.++.+.... ..+..++ .+.+|||+|.. ++..++..|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQE----------DYDRLRPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCcc----------chhhhhhhhc
Confidence 58999999999999999999998764433343332221 2334444 57899999964 3444555565
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~ 270 (308)
..+ +++++|+|.++..+..+.. +...+. ..+.|+++|+||+|+....+. ...+..++.+.+.+..
T Consensus 71 ~~a---~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 71 PQT---DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred ccC---CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence 544 4599999999877665542 222222 247899999999998654210 0123344444444433
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+ ...++++||++|.|++++|+.+.+.
T Consensus 148 ~-----~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 148 K-----AVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred C-----CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 2 2679999999999999999998874
No 94
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.86 E-value=1.3e-20 Score=159.43 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=104.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++++.+...+.++.|.......+..++ .+.+|||+|.. ++..++..++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~~~~~~~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR----------EFINMLPLVC 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch----------hHHHhhHHHC
Confidence 4899999999999999999999876554555555554444555555 58899999953 3445666655
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCC-CCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGG-KRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.. ++++++|+|.++..+..+. ++...+. ....| ++|+||+|+........ ....+..+++.+.. .
T Consensus 71 ~~---a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~------~ 140 (182)
T cd04128 71 ND---AVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAM------K 140 (182)
T ss_pred cC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHc------C
Confidence 44 4559999999987666553 1111111 23455 68899999964211000 00112222332222 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|.|++++|+++.+.+-
T Consensus 141 ~~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 141 APLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987664
No 95
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=1.5e-20 Score=164.46 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=112.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|.+|||||||+++++++.+...+.++.+.... ..+.+++ .+.+|||+|.. .|..+...|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e----------~~~~~~~~~ 81 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSP----------YYDNVRPLC 81 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCch----------hhHHHHHHH
Confidence 469999999999999999999998765444444443332 2344444 68899999942 455667777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHH
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~ 269 (308)
|..++ ++++|+|.++..++... .+...+. ..+.|+++|+||+|+..... ....+..++.+++++.
T Consensus 82 ~~~ad---~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 82 YSDSD---AVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred cCCCc---EEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 76554 48999999988776642 2222222 24789999999999864210 0122456667777766
Q ss_pred HHhhhcCCC-CEEEeecCCCC-CHHHHHHHHHHHHHH
Q 021750 270 IQGFFQTAP-PWIMTSSVTNQ-GRDEILLHMAQLRNY 304 (308)
Q Consensus 270 ~~~~~~~~~-~~~~vSA~~g~-gi~el~~~i~~~~~~ 304 (308)
++ + +|++|||++|+ |++++|..+.+.+.+
T Consensus 159 ~~------~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 159 LG------AEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred cC------CCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 54 5 69999999998 899999999877543
No 96
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.86 E-value=7.3e-21 Score=162.08 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=108.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+.++..+.+.....++.+... ...+.+++ .+.+|||+|.. +++.++..|+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e----------~~~~l~~~~~ 72 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQE----------EYDRLRTLSY 72 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCch----------hhhhhhhhhc
Confidence 5999999999999999999999876444444443222 12233444 58899999953 5666777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~ 270 (308)
+.++ ++++|+|.++..++.+.. +...+. ..+.|+++|+||+|+.+.... ...+..++.+.+.+.+
T Consensus 73 ~~a~---~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 73 PQTN---VFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred cCCC---EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 6544 589999999887766542 222121 257999999999999654210 0012333444444433
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+ ..+++++||++|+|++++|+++.+.+-
T Consensus 150 ~-----~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 150 H-----AVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred C-----CcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 2 257999999999999999999998664
No 97
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=5.2e-21 Score=158.65 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=97.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc--e--eccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL--A--LTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~--~--~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+|+++|.+|||||||+++|++.... . .....++.......+.+++ .+.+|||||.. .+..++..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE----------SLRSLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh----------hhHHHHHHH
Confidence 5899999999999999999874211 0 1111222222333455554 79999999964 344455555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh-hhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG-FFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 275 (308)
+.. ++++++|+|+++..+.... .+..++. ..++|+++|+||+|+.... ..+.+..+.+.... ...
T Consensus 71 ~~~---~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------~~~~~~~~~~~~~~~~~~ 141 (167)
T cd04160 71 YAE---CHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL------SVEEIKEVFQDKAEEIGR 141 (167)
T ss_pred hCC---CCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC------CHHHHHHHhccccccccC
Confidence 544 4469999999875433321 1222222 2579999999999986532 22223232222111 111
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
...+++++||++|+|++++++||.+
T Consensus 142 ~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 142 RDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CceEEEEeeCCCCcCHHHHHHHHhc
Confidence 2368999999999999999999865
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.86 E-value=1.7e-20 Score=157.53 Aligned_cols=153 Identities=15% Similarity=0.157 Sum_probs=102.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..||+++|.+|||||||++++..+++. .+ .|+.......+.... .+.+|||||.. .+..++..|+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~~~~ 79 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TT--IPTIGFNVETVTYKNISFTVWDVGGQD----------KIRPLWRHYYT 79 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-Cc--CCccccceEEEEECCEEEEEEECCCCh----------hhHHHHHHHhC
Confidence 469999999999999999999876542 22 333333333344444 78999999953 45557777776
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh--hhcC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG--FFQT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 276 (308)
.++ ++++|+|.+++.+..+. .+...+.. .+.|++||+||+|+.+.. . .+++.+.++. ....
T Consensus 80 ~ad---~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~---~~~i~~~~~~~~~~~~ 147 (175)
T smart00177 80 NTQ---GLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------K---AAEITEKLGLHSIRDR 147 (175)
T ss_pred CCC---EEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------C---HHHHHHHhCccccCCC
Confidence 554 58999999976544332 22222222 468999999999987532 1 1223332221 1112
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+.++++||++|+|++++|+||.+.+
T Consensus 148 ~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 148 NWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred cEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 34577899999999999999998765
No 99
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=2.4e-20 Score=169.19 Aligned_cols=161 Identities=28% Similarity=0.330 Sum_probs=114.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.|+++|.||||||||+|+|++.+ .+.+++.+++|+... .+..+ .+++++||||+..... .+... +......
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~-~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~~~---~~~~~~~ 80 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALNRA---MNKAAWS 80 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHHHH---HHHHHHH
Confidence 59999999999999999999975 367788888877532 22223 3899999999864321 11111 2222223
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
....+|++++|+|++......+..+...+...++|+++|+||+|+.... +.+....+.+...+. ..+++++
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~--------~~l~~~~~~l~~~~~-~~~i~~i 151 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDK--------EELLPLLEELSELMD-FAEIVPI 151 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCH--------HHHHHHHHHHHhhCC-CCeEEEe
Confidence 3455677999999998666666666666666679999999999997421 223334444433322 4789999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~ 302 (308)
||+++.|+++++++|.+.+
T Consensus 152 SA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYL 170 (292)
T ss_pred cCCCCCCHHHHHHHHHHhC
Confidence 9999999999999998875
No 100
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.86 E-value=1e-20 Score=158.85 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=105.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+.+++.+.+.....++.+... ...+..++ .+.+|||||.. .+..++..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE----------DYDRLRPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCch----------hhhhhhhhhc
Confidence 4899999999999999999998765443333332211 22333444 57899999953 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~ 270 (308)
.. ++++++|+|.+++.++.+.. +...+. ..+.|+++|+||+|+.+... ....+..++.+.+.+.+
T Consensus 71 ~~---~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 71 PQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 43 45699999999877665531 222222 24689999999999965321 01123444555555544
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+ ..++++|||++|+|++++|+.+.+.
T Consensus 148 ~-----~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 148 G-----AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred C-----CcEEEEecccccCCHHHHHHHHHHh
Confidence 3 2589999999999999999998763
No 101
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.86 E-value=3.2e-21 Score=157.00 Aligned_cols=162 Identities=20% Similarity=0.276 Sum_probs=124.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
+....||.++|.+|||||||+|++.+.++......+.|.......+.+++ -+.+|||+|. | +|.++.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ-------E---RFqsLg 75 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ-------E---RFQSLG 75 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccH-------H---Hhhhcc
Confidence 35678999999999999999999999887777777888777777777776 4789999994 3 666666
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
..+|+.++. +++++|...+.++..+ +++..... ..-|+||++||+|+...... .+.....+.|++.-
T Consensus 76 ~aFYRgaDc---Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r--~VS~~~Aq~WC~s~ 150 (210)
T KOG0394|consen 76 VAFYRGADC---CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR--QVSEKKAQTWCKSK 150 (210)
T ss_pred cceecCCce---EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc--eeeHHHHHHHHHhc
Confidence 666666554 8999999887665543 33333331 46799999999999764321 24667777777766
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+ ..|||++|||...||++.|+.+.+..-
T Consensus 151 g-----nipyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 151 G-----NIPYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred C-----CceeEEecccccccHHHHHHHHHHHHH
Confidence 5 589999999999999999999887654
No 102
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.86 E-value=2.1e-20 Score=154.56 Aligned_cols=152 Identities=19% Similarity=0.273 Sum_probs=101.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC--CcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR--KKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~--~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
.||+++|.+|||||||++++... .+.....++.|.......+..+ + .+.+|||||.. .+..++.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 70 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE----------LYSDMVS 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH----------HHHHHHH
Confidence 38999999999999999999864 2333333333333333334332 2 68899999942 4445666
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++. .++++++|+|.++..+..+. ..|+.. .+.|+++|+||+|+.+..+ +.....+.+....
T Consensus 71 ~~~~---~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~---- 137 (164)
T cd04101 71 NYWE---SPSVFILVYDVSNKASFENC--SRWVNKVRTASKHMPGVLVGNKMDLADKAE----VTDAQAQAFAQAN---- 137 (164)
T ss_pred HHhC---CCCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECcccccccC----CCHHHHHHHHHHc----
Confidence 6654 34569999999876554332 233321 4699999999999975432 1222223332221
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|.|++++++++.+.+
T Consensus 138 --~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 138 --QLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred --CCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 36799999999999999999998764
No 103
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.86 E-value=2.5e-20 Score=155.21 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=104.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++.++.+...+.++.+... ...+..++ .+.+|||||.. ++..++..++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTE----------QFTAMRELYI 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcc----------cchhhhHHHH
Confidence 5899999999999999999998865443334333221 23334443 57899999954 4455666776
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..+. ++++|+|.+++.+.... .+.......++|+++|+||+|+...+. ...+....+.+.++ .
T Consensus 71 ~~~~---~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----~~~~~~~~~~~~~~-----~ 138 (168)
T cd04177 71 KSGQ---GFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----VSREDGVSLSQQWG-----N 138 (168)
T ss_pred hhCC---EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCc----cCHHHHHHHHHHcC-----C
Confidence 6654 47899999876554332 122222245799999999999875432 12233333333221 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++|+++...+
T Consensus 139 ~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 139 VPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998643
No 104
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.85 E-value=2.8e-20 Score=153.30 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=100.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++...+.....++.+... ......++ .+.+|||||.. .+..+...++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~ 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQE----------DYAAIRDNYH 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChh----------hhhHHHHHHh
Confidence 4899999999999999999998754322222211111 12223333 58899999953 3334555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
...+ ++++|+|.+++.+.... .+..+.. ..++|+++|+||+|+..... ........+.+.+ .
T Consensus 70 ~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----~~~~~~~~~~~~~------~ 136 (164)
T cd04139 70 RSGE---GFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----VSSEEAANLARQW------G 136 (164)
T ss_pred hcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccc----cCHHHHHHHHHHh------C
Confidence 5444 48899998876543321 1122222 36899999999999976321 1233333444333 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|+|++++|+++.+.+.
T Consensus 137 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 137 VPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988765
No 105
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=1.9e-20 Score=180.43 Aligned_cols=161 Identities=24% Similarity=0.294 Sum_probs=115.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+++|+|+|.+|||||||+|+|++... +.+...+|+|++... +.+++ .+.+|||||+.... ..+...+......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHH
Confidence 357999999999999999999998754 567889998876533 33444 79999999975322 1222233334444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
++.. +|++++|+|++++.+..+..+..++...++|+++|+||+|+.... .... +.+...+ ...
T Consensus 114 ~~~~---aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~--------~~~~---~~~~~g~---~~~ 176 (472)
T PRK03003 114 AMRT---ADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGE--------ADAA---ALWSLGL---GEP 176 (472)
T ss_pred HHHh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccc--------hhhH---HHHhcCC---CCe
Confidence 4444 456999999999888777778888888899999999999986421 1111 1121111 235
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++||++|.|+++++++|.+.+..
T Consensus 177 ~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 177 HPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEEcCCCCCcHHHHHHHHhhccc
Confidence 799999999999999999987643
No 106
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=2.8e-20 Score=154.56 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=102.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||++++.+.........+.+.......+.+++ .+.+||+||.. .+......
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~ 75 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE----------RFRSITQS 75 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 457999999999999999999997654322233333333334455544 47889999953 34445555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-HH---HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-EY---ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-~l---~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++..+ +++++|+|.++..+.... .+ ...+...+.|+++|+||+|+....+ +..+..+.+.+..
T Consensus 76 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----i~~~~~~~~~~~~------ 142 (169)
T cd04114 76 YYRSA---NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE----VSQQRAEEFSDAQ------ 142 (169)
T ss_pred HhcCC---CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc----cCHHHHHHHHHHc------
Confidence 55443 458999999876544322 11 1222335799999999999875432 1222233332221
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|.|++++|++|.+.+
T Consensus 143 ~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 143 DMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 26799999999999999999998753
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=2.9e-20 Score=157.16 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=104.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.+||+++|.+|||||||++++..+++.. ..++.+.. ...+..++ .+.+|||||.. .++.++..|+.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~--~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~~ 83 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFN--VETVEYKNLKFTMWDVGGQD----------KLRPLWRHYYQ 83 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccc--eEEEEECCEEEEEEECCCCH----------hHHHHHHHHhc
Confidence 4699999999999999999998765532 33333332 23344444 78999999953 45557777776
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-h-cC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-F-QT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 276 (308)
.++ ++++|+|+++..+..+. .+..++.. .++|++||+||+|+.+.. . .+++.+.++.. . ..
T Consensus 84 ~ad---~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~---~~~i~~~l~~~~~~~~ 151 (182)
T PTZ00133 84 NTN---GLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------S---TTEVTEKLGLHSVRQR 151 (182)
T ss_pred CCC---EEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------C---HHHHHHHhCCCcccCC
Confidence 554 48999999876544332 23333332 468999999999986532 1 12333333211 1 11
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+.++++||++|+|++++|++|.+.+...
T Consensus 152 ~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 152 NWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred cEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 23567899999999999999999877653
No 108
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.85 E-value=3.1e-20 Score=161.34 Aligned_cols=162 Identities=21% Similarity=0.203 Sum_probs=108.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
.||+++|.+|||||||+++|+.+++.. ..++.+.... ...+.. .+.+|||||.. .+..+...|+..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~--~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~~~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFY--LKQWGPYNISIWDTAGRE----------QFHGLGSMYCRG 67 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEE--EEEeeEEEEEEEeCCCcc----------cchhhHHHHhcc
Confidence 389999999999999999999987632 2333332222 122222 58899999953 344566667654
Q ss_pred cCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCccc---------------CCCCCchhhHHH
Q 021750 205 RSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKK---------------NGGKRPEENLND 265 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~---------------~~~~~~~~~~~~ 265 (308)
+ +++++|+|.++..++.+.. +..+.. ..+.|+++|+||+|+.+... ....+..++.+.
T Consensus 68 a---d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~ 144 (220)
T cd04126 68 A---AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKA 144 (220)
T ss_pred C---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHH
Confidence 4 4599999999877766542 222222 24689999999999975110 012245566666
Q ss_pred HHHHHHhhh--------cCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 266 FQELIQGFF--------QTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 266 ~~~~~~~~~--------~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+.+.+.... ....+|+++||++|.||+++|..+.+.+.
T Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 145 FYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 665543110 01267999999999999999999997664
No 109
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=1.3e-20 Score=157.34 Aligned_cols=158 Identities=19% Similarity=0.156 Sum_probs=105.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc-eeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL-ALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..+||+++|.+|||||||++++++..+. ..+.++.+.......+.+++ .+.+||++|... +..+..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----------~~~~~~ 72 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEV----------AILLND 72 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccc----------ccccch
Confidence 4579999999999999999999998764 33444444443334445544 477899998532 222444
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHh-ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWL-GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~-~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.|+.. +|++++|+|++++.+.... ++...+ ...++|+++|+||+|+.+... +.....+++.+.++ .
T Consensus 73 ~~~~~---~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~----~~~~~~~~~~~~~~-----~ 140 (169)
T cd01892 73 AELAA---CDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ----RYEVQPDEFCRKLG-----L 140 (169)
T ss_pred hhhhc---CCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccc----ccccCHHHHHHHcC-----C
Confidence 55543 4569999999876544332 222222 124799999999999965432 11223445544432 1
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..++++||++|.|++++|+.+.+.+-
T Consensus 141 ~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 141 PPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CCCEEEEeccCccHHHHHHHHHHHhh
Confidence 24699999999999999999988764
No 110
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.85 E-value=4.7e-21 Score=150.50 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=127.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++.+|+|+||||||||+.++....|...+..+.|....+..+.+++ ++.+|||+| +| +|+.++..|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG-------qE---rFrtitsty 77 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAG-------QE---RFRTITSTY 77 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeeccc-------HH---HHHHHHHHH
Confidence 46889999999999999999998876555666677777777777776 688999999 44 788899999
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
|+.-.+ +++|+|.++++++.+. .+|+.+ ...|-++|+||+|+++.+. +..++...+....+
T Consensus 78 yrgthg---v~vVYDVTn~ESF~Nv--~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----V~t~dAr~~A~~mg----- 143 (198)
T KOG0079|consen 78 YRGTHG---VIVVYDVTNGESFNNV--KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----VDTEDARAFALQMG----- 143 (198)
T ss_pred ccCCce---EEEEEECcchhhhHhH--HHHHHHHHhcCccccceecccCCCCcccee----eehHHHHHHHHhcC-----
Confidence 887665 8999999999888764 566653 5688999999999987664 45566666665553
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+.+|++||++.+|++.+|..|.+++.+.
T Consensus 144 -ie~FETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 144 -IELFETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred -chheehhhhhcccchHHHHHHHHHHHHH
Confidence 8899999999999999999999887654
No 111
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=4.2e-20 Score=155.05 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=101.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC-------cceeccC------CCCceEEEEE--EEe---CC---CEEEecCCCcccCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK-------KLALTSK------TPGKTQCINH--FRI---ND---SWYLVDLPGYGYAA 185 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~-------~~~~~~~------~~~~t~~~~~--~~~---~~---~~~liDtpG~~~~~ 185 (308)
+|+++|.+|||||||+++|++.. +...+.+ ..|.+..... ..+ ++ .+.+|||||+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--- 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV--- 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh---
Confidence 69999999999999999999742 1111111 2244443222 112 22 57899999974
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLND 265 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~ 265 (308)
++...+..++..+ |++++|+|++++.+..+......+...++|+++|+||+|+.+.. ..+..++
T Consensus 79 -------~~~~~~~~~~~~a---d~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~------~~~~~~~ 142 (179)
T cd01890 79 -------DFSYEVSRSLAAC---EGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD------PERVKQQ 142 (179)
T ss_pred -------hhHHHHHHHHHhc---CeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC------HHHHHHH
Confidence 3444666666554 55899999998766555443344445689999999999986422 1222334
Q ss_pred HHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 266 FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 266 ~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+.+.++- ....++++||++|+|+++++++|.+.+
T Consensus 143 ~~~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 143 IEDVLGL---DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHhCC---CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 4433321 113589999999999999999998754
No 112
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.85 E-value=3e-20 Score=152.70 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=100.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|+|||||++++++..+.....+..+.+.....+...+ .+.+||+||.. .+...+..++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~ 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE----------RYHALGPIYY 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchH----------HHHHhhHHHh
Confidence 3899999999999999999998765322222222222223333333 58899999943 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-HHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-YASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.. ++++++|+|.+++.+..... +... ....++|+++|+||+|+..... ...+.++++.+.. ..
T Consensus 71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----~~~~~~~~~~~~~------~~ 137 (162)
T cd04123 71 RD---ADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRV----VSKSEAEEYAKSV------GA 137 (162)
T ss_pred cc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC----CCHHHHHHHHHHc------CC
Confidence 43 45699999998766543321 1111 1123789999999999985432 2233344443332 36
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++++||++++|++++++++.+.+
T Consensus 138 ~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 138 KHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 799999999999999999998754
No 113
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.85 E-value=8.7e-21 Score=156.22 Aligned_cols=149 Identities=21% Similarity=0.242 Sum_probs=97.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC--CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
+|+++|.+|||||||+++|.+.++. ...++.+.+ ...+.... .+.+|||||.. .+...+..++..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~--~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVGFN--VEMLQLEKHLSLTVWDVGGQE----------KMRTVWKCYLEN 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccCccCcc--eEEEEeCCceEEEEEECCCCH----------hHHHHHHHHhcc
Confidence 5899999999999999999998653 233333333 23333332 68999999953 344455555554
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hhh-cC
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GFF-QT 276 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~ 276 (308)
+ +++++|+|++++.+.... .+..++.. .+.|+++|+||+|+.... . .+++...++ ... ..
T Consensus 68 ~---~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~---~~~i~~~~~~~~~~~~~ 135 (160)
T cd04156 68 T---DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------T---AEEITRRFKLKKYCSDR 135 (160)
T ss_pred C---CEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------C---HHHHHHHcCCcccCCCC
Confidence 4 458999999876543322 23333322 579999999999986432 1 222322221 111 12
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
..+++++||++|+|++++|++|.+
T Consensus 136 ~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 136 DWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cEEEEecccccCCChHHHHHHHhc
Confidence 346899999999999999999864
No 114
>PLN03108 Rab family protein; Provisional
Probab=99.85 E-value=4.7e-20 Score=159.44 Aligned_cols=155 Identities=21% Similarity=0.322 Sum_probs=110.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+|+|.+|||||||+++|++.++.....++.+.+.....+.+++ .+.+|||+|.. .+..++..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~----------~~~~~~~~ 74 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSITRS 74 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHHH
Confidence 357999999999999999999998766444445555555444555554 57899999953 34445666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHh------ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWL------GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~------~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+++. ++++++|+|.++..+.... ..|+ .....|+++|+||+|+..... +..+..+++.+..
T Consensus 75 ~~~~---ad~~vlv~D~~~~~s~~~l--~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----~~~~~~~~~~~~~---- 141 (210)
T PLN03108 75 YYRG---AAGALLVYDITRRETFNHL--ASWLEDARQHANANMTIMLIGNKCDLAHRRA----VSTEEGEQFAKEH---- 141 (210)
T ss_pred Hhcc---CCEEEEEEECCcHHHHHHH--HHHHHHHHHhcCCCCcEEEEEECccCccccC----CCHHHHHHHHHHc----
Confidence 6654 3458999999987665543 1222 125789999999999976432 2344455555443
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||+++.|++++|+++.+.+-
T Consensus 142 --~~~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 142 --GLIFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 268999999999999999999886654
No 115
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=1.8e-20 Score=153.27 Aligned_cols=153 Identities=25% Similarity=0.348 Sum_probs=106.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 129 ~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
+++|.+|||||||+|+|++... ......+++|.... ....++ .+.+|||||+.+... ..... +...+....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~---~~~~~~~~~ 74 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKE---IREQAELAI 74 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHH---HHHHHHHHH
Confidence 5899999999999999998742 45566777776432 333333 789999999865322 11111 222222333
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeec
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA 285 (308)
..++++++|+|+..+.+..+.++..++...+.|+++|+||+|+..... . ...+.. .. ..+++++||
T Consensus 75 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------~----~~~~~~-~~-~~~~~~~Sa 140 (157)
T cd01894 75 EEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEED--------E----AAEFYS-LG-FGEPIPISA 140 (157)
T ss_pred HhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHH--------H----HHHHHh-cC-CCCeEEEec
Confidence 445679999999887777676777788777899999999999976431 1 111111 11 137899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQL 301 (308)
Q Consensus 286 ~~g~gi~el~~~i~~~ 301 (308)
++|.|+++++++|.+.
T Consensus 141 ~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 141 EHGRGIGDLLDAILEL 156 (157)
T ss_pred ccCCCHHHHHHHHHhh
Confidence 9999999999999875
No 116
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.85 E-value=3.1e-20 Score=152.23 Aligned_cols=154 Identities=27% Similarity=0.383 Sum_probs=105.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC
Q 021750 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 130 lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
|+|.+|||||||+|++++.. ......+++|... ..+.+++ .+.+|||||+.+...... ...+...++.. .
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-E 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-C
Confidence 58999999999999999875 3455567666643 3455544 799999999854221110 11245555544 5
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC
Q 021750 207 TLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 286 (308)
.++++++|+|+++.... ..+..++...++|+++|+||+|+.+... .....+.+.+.+ ..+++++||+
T Consensus 74 ~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~iiv~NK~Dl~~~~~-----~~~~~~~~~~~~------~~~~~~iSa~ 140 (158)
T cd01879 74 KPDLIVNVVDATNLERN--LYLTLQLLELGLPVVVALNMIDEAEKRG-----IKIDLDKLSELL------GVPVVPTSAR 140 (158)
T ss_pred CCcEEEEEeeCCcchhH--HHHHHHHHHcCCCEEEEEehhhhccccc-----chhhHHHHHHhh------CCCeEEEEcc
Confidence 67789999999875432 2334444556899999999999975432 122233333333 2689999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 021750 287 TNQGRDEILLHMAQLRN 303 (308)
Q Consensus 287 ~g~gi~el~~~i~~~~~ 303 (308)
+|.|++++++++.+..+
T Consensus 141 ~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 141 KGEGIDELKDAIAELAE 157 (158)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999987643
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.85 E-value=2e-20 Score=154.14 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=97.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
||+++|.+|||||||++++....+.. ..++.+ .....+...+ .+.+|||||.. .+..+++.++..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~~- 66 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIG--FNVETVTYKNLKFQVWDLGGQT----------SIRPYWRCYYSN- 66 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccC--cCeEEEEECCEEEEEEECCCCH----------HHHHHHHHHhcC-
Confidence 68999999999999999998765432 222222 2222333433 78999999963 344566666654
Q ss_pred CCccEEEEEEeCCCCCChhH--HHHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hcCCC
Q 021750 206 STLVSVFLLIDASIPAKPID--LEYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQTAP 278 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~--~~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 278 (308)
++++++|+|+++..+... ..+..++.. .++|+++|+||+|+.+... ..++.+.+... .....
T Consensus 67 --~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---------~~~i~~~~~~~~~~~~~~ 135 (158)
T cd04151 67 --TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---------EAEISEKLGLSELKDRTW 135 (158)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---------HHHHHHHhCccccCCCcE
Confidence 455999999987543322 223333332 4799999999999874321 22233332211 11224
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
+++++||++|.|+++++++|.+
T Consensus 136 ~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEEEeeccCCCCHHHHHHHHhc
Confidence 6999999999999999999865
No 118
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=7.8e-21 Score=161.58 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=103.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+++|.++.+.....++.+... ...+..++ .+.+|||+|.. .+..+...++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~----------~~~~l~~~~~~ 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQE----------EFDRLRSLSYA 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCCh----------hcccccccccc
Confidence 899999999999999999999876443333333322 22233333 58899999953 23334444544
Q ss_pred hcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccCC--------CCCchhhHHHHHHHHH
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKNG--------GKRPEENLNDFQELIQ 271 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~ 271 (308)
. ++++++|+|.++..++...+ +...+. ..+.|+++|+||+|+.+..... ..+..++...+.+..+
T Consensus 71 ~---a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 71 D---TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred C---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 3 45589999999877665432 222222 2478999999999997643210 0112222223322221
Q ss_pred hhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 272 ~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++++++||++|.|++++|+++.+.+-.
T Consensus 148 -----~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 148 -----ALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred -----CCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 2679999999999999999999987653
No 119
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.3e-21 Score=159.25 Aligned_cols=156 Identities=22% Similarity=0.272 Sum_probs=128.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
-+..|||+++|++|||||-|+.++..+++......+.|.......+.+++ +..+|||+|. | +|+.+.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ-------E---RyrAit 80 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ-------E---RYRAIT 80 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccch-------h---hhcccc
Confidence 35678999999999999999999999988766677778777777777777 4689999994 4 777889
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
..||+.+-+ +++|+|.+...++.+. .+|+.+ .++++++|+||+||.+.+. ++.++.+.+++.-+
T Consensus 81 SaYYrgAvG---AllVYDITr~~Tfenv--~rWL~ELRdhad~nivimLvGNK~DL~~lra----V~te~~k~~Ae~~~- 150 (222)
T KOG0087|consen 81 SAYYRGAVG---ALLVYDITRRQTFENV--ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----VPTEDGKAFAEKEG- 150 (222)
T ss_pred chhhcccce---eEEEEechhHHHHHHH--HHHHHHHHhcCCCCeEEEEeecchhhhhccc----cchhhhHhHHHhcC-
Confidence 999987776 7999999988887753 566653 6899999999999998554 57788888877754
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++||..+.|+++.|+.+...+
T Consensus 151 -----l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 151 -----LFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred -----ceEEEecccccccHHHHHHHHHHHH
Confidence 7799999999999999998766544
No 120
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.85 E-value=4e-20 Score=150.71 Aligned_cols=152 Identities=23% Similarity=0.286 Sum_probs=103.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++.+........++.+.+.....+..++ .+.+||+||.. .+......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~ 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE----------RFRSITPSYY 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH----------HHHHHHHHHh
Confidence 3799999999999999999999865433344555555445555433 68899999953 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.. ++++++|+|++++.+.... .+...+.. .+.|+++|+||+|+..... ...+.++.+.+. ...
T Consensus 71 ~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~------~~~ 137 (159)
T cd00154 71 RG---AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ----VSTEEAQQFAKE------NGL 137 (159)
T ss_pred cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccc----ccHHHHHHHHHH------cCC
Confidence 44 4569999999875443332 12222222 4699999999999973221 133444444333 247
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
+++++||+++.|+++++++|.+
T Consensus 138 ~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 138 LFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred eEEEEecCCCCCHHHHHHHHhC
Confidence 8999999999999999999863
No 121
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.84 E-value=1.2e-19 Score=149.16 Aligned_cols=161 Identities=27% Similarity=0.293 Sum_probs=108.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.+|+|||||+|+|++.+. ......+.++..... +... ..+.+|||||+........ ..+.....
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~--- 77 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG--ERMVKAAW--- 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCce-EeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH--HHHHHHHH---
Confidence 5899999999999999999998753 444555555443222 2222 2689999999864332111 11112222
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
......+++++|+|++.+.......+...+...+.|+++|+||+|+... .+...++.+.+..... ..++++
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--------~~~~~~~~~~~~~~~~-~~~~~~ 148 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD--------KEDLLPLLEKLKELGP-FAEIFP 148 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc--------HHHHHHHHHHHHhccC-CCceEE
Confidence 2334456799999999875555555566666667999999999999742 2234444444443322 368999
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~ 301 (308)
+|++++.|+++++++|.+.
T Consensus 149 ~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 149 ISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEeccCCChHHHHHHHHhh
Confidence 9999999999999999765
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.84 E-value=4.4e-20 Score=151.76 Aligned_cols=149 Identities=20% Similarity=0.229 Sum_probs=100.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
||+++|.+|||||||++++++.+. ....++.+.+ ...+.++. .+.+|||||.. .+...+..++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFN--VETVEYKNVSFTVWDVGGQD----------KIRPLWKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcc--eEEEEECCEEEEEEECCCCh----------hhHHHHHHHhccC
Confidence 689999999999999999999862 3333343433 33344444 79999999954 3344555555544
Q ss_pred CCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hcCCC
Q 021750 206 STLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQTAP 278 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 278 (308)
+++++|+|++.+.+.... .+..+.. ..+.|+++|+||+|+..... .+++.+.++.. .....
T Consensus 68 ---~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~ 135 (158)
T cd00878 68 ---NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS---------VSELIEKLGLEKILGRRW 135 (158)
T ss_pred ---CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC---------HHHHHHhhChhhccCCcE
Confidence 569999999976444332 1222222 35799999999999875431 23333333321 22346
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
+++++||++|.|++++|++|.+
T Consensus 136 ~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEEEeeCCCCCCHHHHHHHHhh
Confidence 8999999999999999999864
No 123
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.84 E-value=4.4e-20 Score=170.87 Aligned_cols=156 Identities=24% Similarity=0.320 Sum_probs=105.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEe-C-CCEEEecCCCcccCCCchhhhhchHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRI-N-DSWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~-~-~~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
.+.++|+++|.+|||||||+|+|++.+ ..+++.+++|.+. ..+.+ + ..+.+|||||+.... +.++...|...+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~~lie~f~~tl 263 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PHELVAAFRATL 263 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC-CHHHHHHHHHHH
Confidence 466899999999999999999999975 3456666666543 33444 2 379999999985421 122222333332
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.....+|++++|+|++++....+. ++...+...++|+++|+||+|+.... .+..+ ..
T Consensus 264 ----e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~---------~v~~~---~~--- 324 (351)
T TIGR03156 264 ----EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP---------RIERL---EE--- 324 (351)
T ss_pred ----HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH---------hHHHH---Hh---
Confidence 223345679999999987665443 22333333478999999999997421 12111 11
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...+++++||++|.|+++++++|.+.
T Consensus 325 -~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 -GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 12468999999999999999998764
No 124
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.84 E-value=3.4e-20 Score=149.93 Aligned_cols=140 Identities=23% Similarity=0.250 Sum_probs=90.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
||+++|.+|||||||+|+|.+..+ . . .+ |.. ..+.. .+|||||... .....+..+. ....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-~-~--~~--t~~---~~~~~--~~iDt~G~~~-----~~~~~~~~~~----~~~~ 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-L-Y--KK--TQA---VEYND--GAIDTPGEYV-----ENRRLYSALI----VTAA 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-c-c--cc--cee---EEEcC--eeecCchhhh-----hhHHHHHHHH----HHhh
Confidence 799999999999999999998753 1 1 11 111 12222 6899999621 0001122222 2234
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC
Q 021750 207 TLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 286 (308)
.+|++++|+|++++.+..+..+... ...|+++|+||+|+.+... ..+..+++.+... ..+++++||+
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~-----~~~~~~~Sa~ 128 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADV-----DIERAKELLETAG-----AEPIFEISSV 128 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCccc-----CHHHHHHHHHHcC-----CCcEEEEecC
Confidence 5567999999998877655433333 2459999999999875221 2233333333221 2479999999
Q ss_pred CCCCHHHHHHHHH
Q 021750 287 TNQGRDEILLHMA 299 (308)
Q Consensus 287 ~g~gi~el~~~i~ 299 (308)
+|.|++++|+++.
T Consensus 129 ~~~gi~~l~~~l~ 141 (142)
T TIGR02528 129 DEQGLEALVDYLN 141 (142)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999874
No 125
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.84 E-value=3.1e-20 Score=153.99 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=100.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+++++...+.....++.+. .....+.+++ .+.+|||||..... ......++.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLES-LYSRQVTIDGEQVSLEILDTAGQQQAD---------TEQLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHH-hceEEEEECCEEEEEEEEECCCCcccc---------cchHHHHHH
Confidence 6899999999999999999986543222222211 1123334444 47899999975310 113344444
Q ss_pred hcCCccEEEEEEeCCCCCChhHH-HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL-EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
. ++++++|+|.++..+.... .+..++. ..++|+++|+||+|+..... +..+....+.+..+
T Consensus 71 ~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~~------ 137 (165)
T cd04146 71 W---ADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----VSTEEGEKLASELG------ 137 (165)
T ss_pred h---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----cCHHHHHHHHHHcC------
Confidence 4 3558999999987665433 1222222 24799999999999865432 23344445544332
Q ss_pred CCEEEeecCCCC-CHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQ-GRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~-gi~el~~~i~~~~~ 303 (308)
.+++++||++|. |++++|+.+.+.+.
T Consensus 138 ~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 138 CLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 689999999994 99999999987653
No 126
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.84 E-value=8e-20 Score=157.03 Aligned_cols=158 Identities=27% Similarity=0.362 Sum_probs=101.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEe-CC-CEEEecCCCcccCCCchhhhhchHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRI-ND-SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~-~~-~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
.++.++|+++|.+|||||||+|++++.+. .....++.|.. ...+.+ +. .+.+|||||+.+... ......+...
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~ 114 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADV--YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP-HQLVEAFRST 114 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchh--ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC-HHHHHHHHHH
Confidence 35567999999999999999999999753 22333333332 222333 22 799999999854221 1211122222
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHH----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDL----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
+ .....++++++|+|++++....+. ++...+...++|+++|+||+|+..... .. ....
T Consensus 115 ~----~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~---------~~---~~~~-- 176 (204)
T cd01878 115 L----EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE---------LE---ERLE-- 176 (204)
T ss_pred H----HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH---------HH---HHhh--
Confidence 2 122345679999999987655442 222223335789999999999975321 11 1111
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....+++++||++|.|+++++++|.+.
T Consensus 177 -~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 177 -AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred -cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 224689999999999999999999765
No 127
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.84 E-value=1e-19 Score=148.59 Aligned_cols=152 Identities=28% Similarity=0.305 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|+|||||++++++... ......++++.... .+..++ ++.+|||||+.+.....+ .. .....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~--~~---~~~~~~ 75 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR-AIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE--KI---GIERAR 75 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce-EeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH--HH---HHHHHH
Confidence 3899999999999999999998753 55667777776542 334444 789999999865332111 00 111122
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....++++++|+|++.+.+..+..+... ..++|+++|+||+|+..... . .......++++
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~---------~--------~~~~~~~~~~~ 136 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSE---------L--------LSLLAGKPIIA 136 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCccc---------c--------ccccCCCceEE
Confidence 22334567999999998777766544443 46799999999999986432 1 11223478999
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~ 302 (308)
+||+++.|+++++++|.+.+
T Consensus 137 ~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 137 ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 99999999999999998764
No 128
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.84 E-value=9.5e-20 Score=153.65 Aligned_cols=158 Identities=20% Similarity=0.240 Sum_probs=107.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceec--------------cCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchh
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALT--------------SKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRE 189 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~--------------~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~ 189 (308)
+|+++|.+|+|||||+|+|++....... ....+.+... ..+...+ .+.+|||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~------- 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE------- 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH-------
Confidence 4899999999999999999987532211 1112333332 2233333 68999999964
Q ss_pred hhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
.+...+..++.. ++++++|+|+..+......++...+...++|+++|+||+|+..... .....+.+.+.
T Consensus 74 ---~~~~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~-----~~~~~~~~~~~ 142 (189)
T cd00881 74 ---DFSSEVIRGLSV---SDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEED-----LEEVLREIKEL 142 (189)
T ss_pred ---HHHHHHHHHHHh---cCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhc-----HHHHHHHHHHH
Confidence 233345555543 4568999999987766666666666667899999999999986321 22333444444
Q ss_pred HHhhh-----------cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 270 IQGFF-----------QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 270 ~~~~~-----------~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++... ....+++++||++|.|+++++++|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 43211 2358899999999999999999998764
No 129
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.84 E-value=5.1e-20 Score=162.85 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=102.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++++++++...+.++.+ ......+.+++ .+.+|||+|.. .+..+...++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~----------~~~~~~~~~~ 69 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH----------PFPAMRRLSI 69 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCCh----------hhhHHHHHHh
Confidence 3799999999999999999998766433333332 12233455554 57799999953 3333444444
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhc------------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLG------------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~------------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
.. .+++++|+|.++..++.+. .+..++. ..++|+++|+||+|+....+ +.. +++.+.
T Consensus 70 ~~---ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----v~~---~ei~~~ 139 (247)
T cd04143 70 LT---GDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----VQR---DEVEQL 139 (247)
T ss_pred cc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----cCH---HHHHHH
Confidence 43 3568999999987665443 1222221 14789999999999975332 122 333333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+... ..+.++++||++|.|++++|++|.++.
T Consensus 140 ~~~~--~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 140 VGGD--ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHhc--CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3321 136799999999999999999999865
No 130
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.84 E-value=4.5e-20 Score=158.23 Aligned_cols=147 Identities=16% Similarity=0.257 Sum_probs=104.3
Q ss_pred EcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCC
Q 021750 131 VGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 131 vG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
+|.+|||||||+++++.+.+...+.++.|.+.....+.+++ .+.+|||+|.. +|..++..|++.++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE----------KFGGLRDGYYIQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHHHhcCCCE
Confidence 69999999999999998765444455555555444455544 68899999953 566677778776554
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 208 LVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 208 ~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
+++|+|.++..+.... ..|+. ..+.|+++|+||+|+.... +..+.. .+.+. ..++|++
T Consensus 71 ---~ilV~D~t~~~S~~~i--~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----v~~~~~-~~~~~------~~~~~~e 133 (200)
T smart00176 71 ---AIIMFDVTARVTYKNV--PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----VKAKSI-TFHRK------KNLQYYD 133 (200)
T ss_pred ---EEEEEECCChHHHHHH--HHHHHHHHHhCCCCCEEEEEECccccccc-----CCHHHH-HHHHH------cCCEEEE
Confidence 8999999987766543 22332 1578999999999986422 122222 22221 2478999
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~ 304 (308)
|||++|+||+++|++|.+.+..
T Consensus 134 ~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 134 ISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987643
No 131
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=5.7e-20 Score=155.62 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.++|+++|.+|||||||++++.+..+ ..+.++.+.+ ...+.+++ ++.+|||||.. .++..+..|+.
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~~ 83 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRL-AQHQPTQHPT--SEELAIGNIKFTTFDLGGHQ----------QARRLWKDYFP 83 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccccc--eEEEEECCEEEEEEECCCCH----------HHHHHHHHHhC
Confidence 36999999999999999999998754 2233333322 33344444 78999999963 34456677765
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh----
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF---- 274 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---- 274 (308)
. ++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.... ..+ ++.+.++-..
T Consensus 84 ~---ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~~~---~i~~~l~l~~~~~~ 151 (184)
T smart00178 84 E---VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA------SED---ELRYALGLTNTTGS 151 (184)
T ss_pred C---CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC------CHH---HHHHHcCCCccccc
Confidence 4 4559999999876443222 3333332 2579999999999986432 222 3333332110
Q ss_pred -----cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 275 -----QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 -----~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.....+++|||++|+|++++++||.+.
T Consensus 152 ~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 152 KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 123569999999999999999999764
No 132
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.84 E-value=8.7e-20 Score=158.99 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=101.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-eeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-ALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+||+++|.+|||||||+++|+++.+. ..+.++.+.+.....+.+++ .+.+|||||... + ....+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~--~~~~~ 68 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM----------W--TEDSC 68 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch----------H--HHhHH
Confidence 48999999999999999999876543 22222222233333444433 688999999530 0 11222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+.. .++++++|+|+++..++... ++...+. ..++|+++|+||+|+..... +..+..+.+....
T Consensus 69 ~~~--~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----v~~~~~~~~a~~~------ 136 (221)
T cd04148 69 MQY--QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSRE----VSVQEGRACAVVF------ 136 (221)
T ss_pred hhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccce----ecHHHHHHHHHHc------
Confidence 221 45669999999987665432 2222222 25799999999999976432 2233333433322
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++++++||++|.|++++|+++.+.+..
T Consensus 137 ~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999988753
No 133
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=8.3e-20 Score=151.78 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=97.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE-EEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC-INHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
||+++|.+|||||||+++|.++.+... .+.+... .....+++ ++.+|||||... +...+..++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 68 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN---VPRVLPEITIPADVTPERVPTTIVDTSSRPQ----------DRANLAAEI 68 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc---CCCcccceEeeeeecCCeEEEEEEeCCCchh----------hhHHHhhhc
Confidence 899999999999999999999865332 2211111 11112222 688999999642 222344444
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
..++++++|+|.+++.+.... .+...+. ..+.|+++|+||+|+.+..... ...+.+..+.+.+. ...
T Consensus 69 ---~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~----~~~ 139 (166)
T cd01893 69 ---RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA--GLEEEMLPIMNEFR----EIE 139 (166)
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh--HHHHHHHHHHHHHh----ccc
Confidence 335568999999987666542 1222222 2479999999999997644210 01122222222222 224
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++++||++|.|++++|+.+.+.+
T Consensus 140 ~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 140 TCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred EEEEeccccccCHHHHHHHHHHHh
Confidence 799999999999999999988764
No 134
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.84 E-value=8.1e-20 Score=153.19 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=101.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..+|+++|.+|||||||+++++.+++.. ..++.+.+ ...+.+++ ++.+|||||.. .+...+..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~~ 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSN--VEEIVYKNIRFLMWDIGGQE----------SLRSSWNTYYT 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccc--eEEEEECCeEEEEEECCCCH----------HHHHHHHHHhh
Confidence 4699999999999999999999876532 34444433 33444444 79999999953 34445666665
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hcC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 276 (308)
. ++++++|+|+++..+.... ++...+.. .++|+++|+||+|+.... . .+++.+.+... ...
T Consensus 82 ~---~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~---~~~i~~~l~~~~~~~~ 149 (174)
T cd04153 82 N---TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------T---PAEISESLGLTSIRDH 149 (174)
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------C---HHHHHHHhCcccccCC
Confidence 4 4569999999876544322 23333322 469999999999987522 1 22233333210 012
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.++++++||++|+|+++++++|.+
T Consensus 150 ~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 150 TWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ceEEEecccCCCCCHHHHHHHHhc
Confidence 357999999999999999999864
No 135
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.84 E-value=2.1e-20 Score=149.31 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=124.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--CC--CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--ND--SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+++.++|++-||||||+..++.+++.....++.|.......++. +. ++.+|||+| ++ +|+++++.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtag-------qe---rfrsitks 77 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG-------QE---RFRSITKS 77 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccc-------hH---HHHHHHHH
Confidence 468999999999999999999999886667777776654333333 22 688999999 44 89999999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-------CCCC-EEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-------NQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-------~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
||++.-+ +++|+|.++..++.+. ..|+.+ ..++ +.+|+.|+||...++ +..++.+++.+..+
T Consensus 78 yyrnsvg---vllvyditnr~sfehv--~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----Vt~EEaEklAa~hg- 147 (213)
T KOG0091|consen 78 YYRNSVG---VLLVYDITNRESFEHV--ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----VTAEEAEKLAASHG- 147 (213)
T ss_pred Hhhcccc---eEEEEeccchhhHHHH--HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----ccHHHHHHHHHhcC-
Confidence 9998877 8999999998887764 344432 3444 568999999998776 67888888888876
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..++++||++|.|++|.|+.+.+.+-..
T Consensus 148 -----M~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 148 -----MAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred -----ceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 7899999999999999999998766443
No 136
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=6.5e-20 Score=174.98 Aligned_cols=157 Identities=26% Similarity=0.350 Sum_probs=115.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+|+++|.+|||||||+|+|++... +.+...+|+|++.. ...+++ .+.+|||||+.... ..+...+......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~- 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQIREQAEIAI- 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHH-
Confidence 589999999999999999999753 67888899887643 334444 79999999985322 112223323333333
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
..+|++++|+|+..+.+..+.++..++...++|+++|+||+|+.+... ...++ .. + ...+++++
T Consensus 77 --~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--------~~~~~---~~--l-g~~~~~~v 140 (429)
T TIGR03594 77 --EEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--------VAAEF---YS--L-GFGEPIPI 140 (429)
T ss_pred --hhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--------cHHHH---Hh--c-CCCCeEEE
Confidence 445679999999998888888888999888999999999999875321 11221 11 1 12479999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~~ 303 (308)
||++|.|++++++++.+.+.
T Consensus 141 Sa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 141 SAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred eCCcCCChHHHHHHHHHhcC
Confidence 99999999999999988763
No 137
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.83 E-value=9.7e-20 Score=150.25 Aligned_cols=152 Identities=21% Similarity=0.347 Sum_probs=113.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+++|.+..+.....++.+.......+..++ .+.+||++|.. ++..+...++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~~~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE----------RFDSLRDIFYR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG----------GGHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccc----------ccccccccccc
Confidence 799999999999999999999876555555665555555666655 58899999943 44445555555
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..+ ++++|+|.++..+.... ..|+.. ...|++||+||+|+.+.+. +..+.++++.+.++
T Consensus 71 ~~~---~~ii~fd~~~~~S~~~~--~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----v~~~~~~~~~~~~~------ 135 (162)
T PF00071_consen 71 NSD---AIIIVFDVTDEESFENL--KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----VSVEEAQEFAKELG------ 135 (162)
T ss_dssp TES---EEEEEEETTBHHHHHTH--HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----SCHHHHHHHHHHTT------
T ss_pred ccc---ccccccccccccccccc--ccccccccccccccccceeeecccccccccc----chhhHHHHHHHHhC------
Confidence 544 48999999887655543 234331 3689999999999987443 34556666665554
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||+++.|+.++|..+.+.+.
T Consensus 136 ~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 136 VPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp SEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999988764
No 138
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.83 E-value=4.6e-20 Score=154.11 Aligned_cols=156 Identities=20% Similarity=0.201 Sum_probs=101.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
|+++|.+|||||||++++++..+.....++.+... ...+..++ .+.+|||||.. .+..+...++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~- 68 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQE----------DYDRLRPLSYP- 68 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCc----------ccchhchhhcC-
Confidence 58999999999999999999865332222222111 22334444 58899999953 23334444443
Q ss_pred cCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHHHHh
Q 021750 205 RSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQELIQG 272 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~ 272 (308)
.++++++|+|.++..+..+.. +...+. ..++|+++|+||+|+...... ...+..++.+.+.+.++
T Consensus 69 --~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 145 (174)
T smart00174 69 --DTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG- 145 (174)
T ss_pred --CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC-
Confidence 345699999999876665431 222222 257999999999999753210 01123333444444432
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++|||++|.|++++|+.+.+.+
T Consensus 146 ----~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 146 ----AVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred ----CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 24799999999999999999998765
No 139
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.83 E-value=1.4e-19 Score=152.24 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=102.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++..+.....++.+... ...+..++ .+.+|||||.. ++..+...++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~ 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQD----------EYSILPQKYS 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChH----------hhHHHHHHHH
Confidence 4899999999999999999998754322222211111 22233332 57899999953 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++++|.++..+.... .+.+.....+.|+++|+||+|+...+. ...+....+.+.+ .
T Consensus 71 ~~~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~------~ 137 (180)
T cd04137 71 IGIH---GYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----VSTEEGKELAESW------G 137 (180)
T ss_pred hhCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----cCHHHHHHHHHHc------C
Confidence 5444 48999999876544332 122222235789999999999875332 1223334443322 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++++|+++++.++.+.+....
T Consensus 138 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 138 AAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999998887653
No 140
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.83 E-value=8.5e-20 Score=154.93 Aligned_cols=155 Identities=25% Similarity=0.279 Sum_probs=101.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..+|+++|++|||||||++++.+.++ ..+.++.+.+ ...+.+++ .+.+||+||.. .+...+..++.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~--~~~i~~~~~~~~l~D~~G~~----------~~~~~~~~~~~ 85 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPT--SEELTIGNIKFKTFDLGGHE----------QARRLWKDYFP 85 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcc--eEEEEECCEEEEEEECCCCH----------HHHHHHHHHhc
Confidence 46999999999999999999998754 2333333322 23444544 78899999953 33345566665
Q ss_pred hcCCccEEEEEEeCCCCCChhH--HHHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh------
Q 021750 204 NRSTLVSVFLLIDASIPAKPID--LEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG------ 272 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~--~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------ 272 (308)
.. +++++|+|.++..+... ..+...+. ..+.|+++|+||+|+.... ..+.++.+.+....
T Consensus 86 ~a---d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~ 156 (190)
T cd00879 86 EV---DGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV------SEEELRQALGLYGTTTGKGV 156 (190)
T ss_pred cC---CEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc------CHHHHHHHhCcccccccccc
Confidence 44 55899999987544322 12222222 2569999999999986422 23333333221110
Q ss_pred ----hhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 273 ----FFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 273 ----~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
......++++|||++|+|++++|+||.+.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 157 SLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 01122568999999999999999999875
No 141
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.83 E-value=1.2e-19 Score=157.74 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=108.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++|.+..+...+.++.+.... ..+.+++ .+.+|||+|.. .|..+...+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e----------~~~~l~~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSS----------YYDNVRPLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcH----------HHHHHhHHhc
Confidence 48999999999999999999998765444454443332 2344544 58899999943 4455666665
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQEL 269 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~ 269 (308)
... |++++|+|.++..++.... ..|.. ..+.|+++|+||+|+..... ....+..++.+.+.+.
T Consensus 71 ~~~---d~illvfdis~~~Sf~~i~-~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~ 146 (222)
T cd04173 71 PDS---DAVLICFDISRPETLDSVL-KKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQ 146 (222)
T ss_pred cCC---CEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHH
Confidence 544 5599999999887665531 12221 25799999999999965321 0112345556666655
Q ss_pred HHhhhcCCCCEEEeecCCCCC-HHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQG-RDEILLHMAQLR 302 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~g-i~el~~~i~~~~ 302 (308)
++ ..+|++|||++++| |+++|+.+....
T Consensus 147 ~~-----~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 147 VG-----AVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred cC-----CCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 53 24899999999985 999999988754
No 142
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.83 E-value=7.5e-20 Score=152.83 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=101.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|+|||||+++++++++.....++.+... ...+.+++ .+.+|||||... +..+...++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 69 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQED----------YDRLRPLSY 69 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCccc----------ccccccccC
Confidence 4899999999999999999998865433333222111 22344444 367899999642 222232333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccCC--------CCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKNG--------GKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~~~ 270 (308)
. .++++++|+|.++..++.+.. +...+. ..++|+++|+||+|+.+..... ..+..++.+.+.+.+
T Consensus 70 ~---~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (174)
T cd04135 70 P---MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI 146 (174)
T ss_pred C---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 3 345689999999876655432 222222 3689999999999986542100 112334444444433
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+ ..++++|||++|.|++++|+.+.+.+
T Consensus 147 ~-----~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 147 G-----AHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred C-----CCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 2 24799999999999999999988753
No 143
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.83 E-value=2e-19 Score=147.53 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=100.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|++|||||||++++++..+.....++.+ ......+..++ .+.+||+||.. .+..+...++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQE----------EFSAMRDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHHHh
Confidence 689999999999999999998754322222222 22233444443 57899999953 23345555555
Q ss_pred hcCCccEEEEEEeCCCCCChhHH-H----HHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL-E----YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~-~----l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.. +++++|+|.+++.+..+. . +.........|+++|+||+|+..... ...+.+..+.+.+. .
T Consensus 70 ~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~------~ 136 (160)
T cd00876 70 QG---DGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ----VSKEEGKALAKEWG------C 136 (160)
T ss_pred cC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccce----ecHHHHHHHHHHcC------C
Confidence 43 558999999876544332 1 11111224799999999999986332 13334444443332 6
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+++++||+++.|+++++++|.+.
T Consensus 137 ~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 137 PFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred cEEEeccCCCCCHHHHHHHHHhh
Confidence 89999999999999999999864
No 144
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.83 E-value=1.1e-19 Score=152.03 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=100.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++.+..+.....++. .......+..++ .+.+|||||.. ++..++..++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 69 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQD----------EFDKLRPLCY 69 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCCh----------hhcccccccc
Confidence 489999999999999999999876533222221 111112334444 57899999963 2223333443
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~ 270 (308)
. .++++++|+|.+++.++.+. .+...+.. .+.|+++|+||+|+..... ....+..++...+.+..
T Consensus 70 ~---~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 146 (173)
T cd04130 70 P---DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI 146 (173)
T ss_pred C---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh
Confidence 3 34569999999987766553 12222222 4699999999999865321 11123444455554433
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMA 299 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~ 299 (308)
+ ..+++++||++|.|++++|+.+.
T Consensus 147 ~-----~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 147 G-----ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred C-----CCeEEEEeCCCCCCHHHHHHHHH
Confidence 2 24899999999999999998875
No 145
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=1.3e-19 Score=150.95 Aligned_cols=153 Identities=17% Similarity=0.205 Sum_probs=101.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
+|+++|.+|||||||+++|.+. +...+.++.|.+ ...+..++ .+.+||+||.. +++.++..|+..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDKYEVCIFDLGGGA----------NFRGIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECCEEEEEEECCCcH----------HHHHHHHHHHcCC
Confidence 4899999999999999999986 434455555544 23444444 78999999943 4555777777655
Q ss_pred CCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHH-HHHHhhhcCCCC
Q 021750 206 STLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ-ELIQGFFQTAPP 279 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 279 (308)
+ ++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.+... ..+..+.+. +.+.+.....+.
T Consensus 68 ~---~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~-----~~~i~~~~~l~~~~~~~~~~~~ 139 (167)
T cd04161 68 H---GLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL-----GADVIEYLSLEKLVNENKSLCH 139 (167)
T ss_pred C---EEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC-----HHHHHHhcCcccccCCCCceEE
Confidence 4 58999999986554432 22222222 4789999999999976442 111111110 111111112357
Q ss_pred EEEeecCCC------CCHHHHHHHHHH
Q 021750 280 WIMTSSVTN------QGRDEILLHMAQ 300 (308)
Q Consensus 280 ~~~vSA~~g------~gi~el~~~i~~ 300 (308)
+++|||++| .|+++.|+||.+
T Consensus 140 ~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 140 IEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEeEceeCCCCccccCHHHHHHHHhc
Confidence 888999998 899999999964
No 146
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.83 E-value=2.6e-19 Score=147.95 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=94.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
+|+++|.+|||||||+|+|.+... .. . .+. .+.+... .+|||||...... + +.+..+....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~-~---~~~---~v~~~~~-~~iDtpG~~~~~~------~---~~~~~~~~~~ 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LA-R---KTQ---AVEFNDK-GDIDTPGEYFSHP------R---WYHALITTLQ 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cC-c---cce---EEEECCC-CcccCCccccCCH------H---HHHHHHHHHh
Confidence 799999999999999999987531 11 1 111 1122221 2699999753221 1 2222222344
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC
Q 021750 207 TLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 286 (308)
.+|++++|+|++...+.....+... ..++|+++++||+|+.+. ..+ .+.+.+.+. ....|++++||+
T Consensus 64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~-------~~~---~~~~~~~~~-~~~~p~~~~Sa~ 130 (158)
T PRK15467 64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA-------DVA---ATRKLLLET-GFEEPIFELNSH 130 (158)
T ss_pred cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc-------cHH---HHHHHHHHc-CCCCCEEEEECC
Confidence 5677999999997765544333332 246899999999998642 122 233333222 223699999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 021750 287 TNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 287 ~g~gi~el~~~i~~~~~~ 304 (308)
+|+|++++++++.+....
T Consensus 131 ~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 131 DPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CccCHHHHHHHHHHhchh
Confidence 999999999999988754
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.83 E-value=3.3e-19 Score=169.67 Aligned_cols=156 Identities=26% Similarity=0.262 Sum_probs=109.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchH-HHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWD-KFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~-~~~~~ 200 (308)
.++|+++|.||||||||+|+|++.++ ++++..+|+|++.. .+.+++ .+.+|||||+.+.....+ .+. .....
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie---~~gi~~~~~ 278 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVE---RLGIEKSFK 278 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHH---HHHHHHHHH
Confidence 35999999999999999999999754 56788999998753 445555 789999999864321111 110 11123
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
++ ..+|++++|+|++++.+..+. +...+...++|+++|+||+|+... + .+.+.+.+ ..++
T Consensus 279 ~~---~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~---------~~~~~~~~------~~~~ 338 (442)
T TIGR00450 279 AI---KQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-S---------LEFFVSSK------VLNS 338 (442)
T ss_pred HH---hhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-c---------hhhhhhhc------CCce
Confidence 33 345669999999987766554 334444457999999999998642 1 22222222 2578
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+++||++ .|++++++.+.+.+...
T Consensus 339 ~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 339 SNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEEEEec-CCHHHHHHHHHHHHHHH
Confidence 9999998 69999999988877653
No 148
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1e-19 Score=143.23 Aligned_cols=154 Identities=23% Similarity=0.307 Sum_probs=122.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
-.+||+++|..|||||+|+.++..+-+.+-...+.|....+..+++++ ++.+|||+| ++ +|+++...
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag-------qe---rfrsitqs 75 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG-------QE---RFRSITQS 75 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc-------hH---HHHHHHHH
Confidence 357999999999999999999999877766677778877788888876 689999999 44 89999999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
||+.+.. +++|+|.+...++..+ -+|+. ..++--|+|+||+|+.+.++ ++....+++.+...
T Consensus 76 yyrsaha---lilvydiscqpsfdcl--pewlreie~yan~kvlkilvgnk~d~~drre----vp~qigeefs~~qd--- 143 (213)
T KOG0095|consen 76 YYRSAHA---LILVYDISCQPSFDCL--PEWLREIEQYANNKVLKILVGNKIDLADRRE----VPQQIGEEFSEAQD--- 143 (213)
T ss_pred Hhhhcce---EEEEEecccCcchhhh--HHHHHHHHHHhhcceEEEeeccccchhhhhh----hhHHHHHHHHHhhh---
Confidence 9998876 8999999987776553 33333 24556689999999988765 45666666666543
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.-++++||++.+|++.||..+.-.+
T Consensus 144 ---myfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 144 ---MYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred ---hhhhhhcccchhhHHHHHHHHHHHH
Confidence 4578999999999999998876443
No 149
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.9e-19 Score=172.16 Aligned_cols=156 Identities=24% Similarity=0.317 Sum_probs=112.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+|+|++.+. +.+...+++|++. ....+++ .+.+|||||+..... .....+......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~~- 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD--GFEKQIREQAELA- 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch--hHHHHHHHHHHHH-
Confidence 6899999999999999999998754 5677888888754 3344544 799999999864211 1111222223333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
...+|++++|+|+..+.+..+.++..|+...++|+++|+||+|+.+. .....++ .. ++ ...+++
T Consensus 78 --~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~--------~~~~~~~---~~--lg-~~~~~~ 141 (435)
T PRK00093 78 --IEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE--------EADAYEF---YS--LG-LGEPYP 141 (435)
T ss_pred --HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc--------hhhHHHH---Hh--cC-CCCCEE
Confidence 34456799999999888888878888888889999999999996541 1112222 11 11 134899
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~ 301 (308)
+||++|.|++++++++.+.
T Consensus 142 iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 142 ISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred EEeeCCCCHHHHHHHHHhh
Confidence 9999999999999999873
No 150
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.83 E-value=1.3e-19 Score=153.96 Aligned_cols=159 Identities=26% Similarity=0.366 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce-----------ec-----cCCCCceEE--EEEEE--eCC-CEEEecCCCccc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA-----------LT-----SKTPGKTQC--INHFR--IND-SWYLVDLPGYGY 183 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~-----------~~-----~~~~~~t~~--~~~~~--~~~-~~~liDtpG~~~ 183 (308)
..+|+++|..++|||||+++|+...... .. ....+.|.. ...+. ... .+.++||||...
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 4589999999999999999999643110 00 011233332 22333 233 799999999531
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhH
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENL 263 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~ 263 (308)
+..........+|++++|+|+..+......++..++...++|+++|+||+|+...+ ..+..
T Consensus 83 -------------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~------~~~~~ 143 (188)
T PF00009_consen 83 -------------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKE------LEEII 143 (188)
T ss_dssp -------------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHH------HHHHH
T ss_pred -------------eeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhh------HHHHH
Confidence 55555566677788999999999988888888888888999999999999998332 34445
Q ss_pred HHHHHHH-Hhhhc---CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 264 NDFQELI-QGFFQ---TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 264 ~~~~~~~-~~~~~---~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++.+.+ +.... ...+++++||++|.|+++|++.|.+.+
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 5555333 22211 136899999999999999999998875
No 151
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.82 E-value=1.6e-19 Score=150.08 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=99.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
|+++|.+|||||||+++|++..+.....++.|.. ...+...+ ++.+|||||.. +++.++..|+..++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQ----------NLRKYWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEeeCCeEEEEEECCCCc----------chhHHHHHHHhhCC
Confidence 7999999999999999999876544444444432 22233333 78999999953 34557777776655
Q ss_pred CccEEEEEEeCCCCCChhHH--HHHHHhc-cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH--Hhh-hcCCCCE
Q 021750 207 TLVSVFLLIDASIPAKPIDL--EYASWLG-QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI--QGF-FQTAPPW 280 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~--~l~~~~~-~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~ 280 (308)
. +++|+|.++..+.... .+..+.. ..++|+++|+||+|+..... ..++.+.+ ... -...+++
T Consensus 70 ~---ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~---------~~~i~~~~~~~~~~~~~~~~~ 137 (164)
T cd04162 70 G---LIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS---------VQEIHKELELEPIARGRRWIL 137 (164)
T ss_pred E---EEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC---------HHHHHHHhCChhhcCCCceEE
Confidence 4 8999999876543322 2233332 26899999999999875432 22221111 111 1124678
Q ss_pred EEeecCC------CCCHHHHHHHHHH
Q 021750 281 IMTSSVT------NQGRDEILLHMAQ 300 (308)
Q Consensus 281 ~~vSA~~------g~gi~el~~~i~~ 300 (308)
+++||++ ++|++++|+.+..
T Consensus 138 ~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 138 QGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EEeeecCCCChhHHHHHHHHHHHHhc
Confidence 8999888 9999999998764
No 152
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.82 E-value=3.6e-19 Score=152.42 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=99.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||++++++.++.....++... .....+.+++ .+.+|||||.. .+..+...++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSY----------SFPAMRKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCch----------hhhHHHHHHhh
Confidence 6899999999999999999997653322222221 2223344444 57899999953 33334445544
Q ss_pred hcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
. ++++++|+|.+++.+..+. .+.......++|+++|+||+|+...... +..+... +.... ....
T Consensus 70 ~---ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~---v~~~~~~---~~~~~--~~~~ 138 (198)
T cd04147 70 N---SDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQ---VPAKDAL---STVEL--DWNC 138 (198)
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccc---ccHHHHH---HHHHh--hcCC
Confidence 4 4559999999876554432 1222222357999999999998753110 1111111 11111 1236
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+++++||++|.|++++|++|.+.+.
T Consensus 139 ~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 139 GFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cEEEecCCCCCCHHHHHHHHHHHhh
Confidence 7999999999999999999998654
No 153
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.82 E-value=2.9e-19 Score=170.77 Aligned_cols=153 Identities=27% Similarity=0.326 Sum_probs=108.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+|+|++.+. ..+++.+++|++.. .+.+++ .+.+|||||+.+.....+ .+ ..+...
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie---~~--gi~~~~ 289 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVE---KI--GIERSR 289 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHH---HH--HHHHHH
Confidence 5999999999999999999999753 56788899887643 344555 799999999864221111 00 011112
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....+|++++|+|++++.+..+.++.. ...++|+++|+||+|+..... .. . ....++++
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~--~~~~~piiiV~NK~DL~~~~~---------~~------~---~~~~~~i~ 349 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILE--ELKDKPVIVVLNKADLTGEID---------LE------E---ENGKPVIR 349 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHH--hcCCCCcEEEEEhhhccccch---------hh------h---ccCCceEE
Confidence 2334456799999999887665543322 245799999999999975321 11 1 12367999
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+||++|+|+++++++|.+.+..
T Consensus 350 iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 350 ISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EEeeCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999988754
No 154
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.82 E-value=2.8e-19 Score=145.84 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=99.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
.|+++|++|||||||+++|.+.++.....++.+ .....+..+. .+.+|||||.. .+...+..++..+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~~~ 68 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVG--FNMRKVTKGNVTLKVWDLGGQP----------RFRSMWERYCRGV 68 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCC--cceEEEEECCEEEEEEECCCCH----------hHHHHHHHHHhcC
Confidence 489999999999999999999866443333333 2223333343 68899999953 4455666666544
Q ss_pred CCccEEEEEEeCCCCCChhH--HHHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hhhcCCC
Q 021750 206 STLVSVFLLIDASIPAKPID--LEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GFFQTAP 278 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~--~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 278 (308)
+++++|+|++....... ..+..++. ..++|+++|+||+|+..... .+++.+.+. .......
T Consensus 69 ---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~ 136 (159)
T cd04159 69 ---NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS---------VDELIEQMNLKSITDREV 136 (159)
T ss_pred ---CEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC---------HHHHHHHhCcccccCCce
Confidence 45899999987543322 12222222 25789999999999875321 222222221 1112336
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
+++++||++|.|+++++++|.+
T Consensus 137 ~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 137 SCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEEEEEeccCCChHHHHHHHhh
Confidence 7899999999999999999875
No 155
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.82 E-value=3.1e-19 Score=147.53 Aligned_cols=148 Identities=15% Similarity=0.154 Sum_probs=99.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+.+++...+.....+..+ .....+.+++ .+.+|||+|... ..|+.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~--~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~~~ 64 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG--RFKKEVLVDGQSHLLLIRDEGGAPD---------------AQFAS 64 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEECCEEEEEEEEECCCCCc---------------hhHHh
Confidence 799999999999999999988765433322211 1223455554 478899999531 12333
Q ss_pred hcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
. ++++++|+|.++..++.+. .+...+. ..+.|+++|+||+|+..... ..+..+..+++.+..+ .+
T Consensus 65 ~---~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~--~~v~~~~~~~~~~~~~-----~~ 134 (158)
T cd04103 65 W---VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNP--RVIDDARARQLCADMK-----RC 134 (158)
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCC--cccCHHHHHHHHHHhC-----CC
Confidence 3 4569999999998877663 2222221 14689999999999853211 1134444555554332 37
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+|++|||++|.||+++|+.+.+.
T Consensus 135 ~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 135 SYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred cEEEEecCCCCCHHHHHHHHHhh
Confidence 89999999999999999998754
No 156
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=4.3e-19 Score=178.64 Aligned_cols=162 Identities=20% Similarity=0.263 Sum_probs=116.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEE--EeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHF--RIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.||||||||+|+|++.+. +.+.+.+|+|++.... .+++ .+.+|||||+..... .+...+.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE--GIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc--cHHHHHHHHHH
Confidence 3456999999999999999999998754 6788899999875443 3334 799999999764221 12222333333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
.++. .+|++++|+|++.+....+.++..++...++|+++|+||+|+.... ... .+.+.. . ...
T Consensus 350 ~~~~---~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~--------~~~---~~~~~l--g-~~~ 412 (712)
T PRK09518 350 IAVS---LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE--------YDA---AEFWKL--G-LGE 412 (712)
T ss_pred HHHH---hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch--------hhH---HHHHHc--C-CCC
Confidence 3333 4566999999998888777778888888899999999999986421 111 122211 1 124
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++||++|.|+++++++|.+.+..
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhccc
Confidence 6799999999999999999987643
No 157
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.82 E-value=4.7e-19 Score=151.19 Aligned_cols=150 Identities=20% Similarity=0.246 Sum_probs=96.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC--Ccceec------------cCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR--KKLALT------------SKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~--~~~~~~------------~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~ 188 (308)
.+|+++|.+|||||||+++|++. .+.... ....|++.... .+..++ .+.+|||||..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~------ 76 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA------ 76 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH------
Confidence 48999999999999999999972 221111 11234444332 233333 78999999964
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
+|...+..++...+ ++++|+|++++.......+..++...++|+++|+||+|+.... .....+++.+
T Consensus 77 ----~~~~~~~~~~~~~d---~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------~~~~~~~~~~ 143 (194)
T cd01891 77 ----DFGGEVERVLSMVD---GVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR------PEEVVDEVFD 143 (194)
T ss_pred ----HHHHHHHHHHHhcC---EEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC------HHHHHHHHHH
Confidence 45556666666554 5899999987654443344444445689999999999997532 2233444444
Q ss_pred HHHhh----hcCCCCEEEeecCCCCCHHHH
Q 021750 269 LIQGF----FQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 269 ~~~~~----~~~~~~~~~vSA~~g~gi~el 294 (308)
.+... -....+++++||++|.|+.++
T Consensus 144 ~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 144 LFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHhCCccccCccCEEEeehhcccccccc
Confidence 43221 112478999999999887554
No 158
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.6e-19 Score=142.71 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=123.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..+|++++|..|.|||+|+.+++.+++-...+.+.|.......+.+++ ++.+|||+| ++ +|++..+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAG-------QE---rFRSVtR 76 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG-------QE---RFRSVTR 76 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeeccc-------HH---HHHHHHH
Confidence 4467999999999999999999999887777888888887766777766 688999999 44 8999999
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.||+.+.+ .++|+|.++..++.. +..|+. ..++-+++++||.||...++ +.-.+..++.+.-
T Consensus 77 sYYRGAAG---AlLVYD~Tsrdsfna--LtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----VtflEAs~FaqEn--- 144 (214)
T KOG0086|consen 77 SYYRGAAG---ALLVYDITSRDSFNA--LTNWLTDARTLASPNIVVILCGNKKDLDPERE----VTFLEASRFAQEN--- 144 (214)
T ss_pred HHhccccc---eEEEEeccchhhHHH--HHHHHHHHHhhCCCcEEEEEeCChhhcChhhh----hhHHHHHhhhccc---
Confidence 99999888 689999998877654 456665 36778999999999987765 3444444444332
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
...+.++||++|+|++|.|-...+.+
T Consensus 145 ---el~flETSa~TGeNVEEaFl~c~~tI 170 (214)
T KOG0086|consen 145 ---ELMFLETSALTGENVEEAFLKCARTI 170 (214)
T ss_pred ---ceeeeeecccccccHHHHHHHHHHHH
Confidence 26789999999999999887655443
No 159
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.82 E-value=2.8e-19 Score=149.46 Aligned_cols=158 Identities=17% Similarity=0.233 Sum_probs=99.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++.+..+...+.++.+... ...+.+++ .+.+|||||.. .+..+...++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE----------DYDRLRPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCch----------hhhhcccccc
Confidence 5899999999999999999999765443333333222 22344443 57899999953 2222332333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~ 270 (308)
..++++++|+|.++..+..+.. +...+. ..++|+++|+||+|+...... ...+.....+.+.+.+
T Consensus 71 ---~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 71 ---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 3445688999998765544431 111111 147999999999998753210 0011122233333322
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+ ..++++|||++|.|++++|++|.+..
T Consensus 148 ~-----~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 148 G-----AFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred C-----CcEEEEeccccCcCHHHHHHHHHHHh
Confidence 1 25799999999999999999998653
No 160
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.82 E-value=3.5e-19 Score=152.20 Aligned_cols=155 Identities=21% Similarity=0.171 Sum_probs=100.4
Q ss_pred CeEEEEcCCCCCHHHHHH-HHhcCCc-----ceeccCCCCc-eEEEEE--------EEeCC---CEEEecCCCcccCCCc
Q 021750 126 PEFALVGRSNVGKSSLLN-SLVRRKK-----LALTSKTPGK-TQCINH--------FRIND---SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin-~l~~~~~-----~~~~~~~~~~-t~~~~~--------~~~~~---~~~liDtpG~~~~~~~ 187 (308)
.||+++|.+|||||||+. ++.+..+ ...+.++.+. ...... ..+++ .+.+|||+|...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 599999999999999996 6655432 1112222221 111111 12333 688999999531
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCccc----------
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKK---------- 253 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~---------- 253 (308)
.+...|++ .++++++|+|.++..+..+.. +...+.. .+.|+++|+||+|+.+...
T Consensus 79 --------~~~~~~~~---~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 147 (195)
T cd01873 79 --------KDRRFAYG---RSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPL 147 (195)
T ss_pred --------hhhcccCC---CCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccc
Confidence 12233444 445699999999887766542 2222221 4789999999999864210
Q ss_pred -----CCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 254 -----NGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 254 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....+..++.+.+.+.++ ++|++|||++|+||+++|+.+.+.
T Consensus 148 ~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 148 ARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 012356667777776654 689999999999999999998764
No 161
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.81 E-value=5.3e-19 Score=147.50 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=99.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..++|+++|++|||||||++++.+... ....++.|.+. ..+..++ .+.+||+||.. .+...+..++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~--~~i~~~~~~~~~~D~~G~~----------~~~~~~~~~~ 79 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNI--KTVQSDGFKLNVWDIGGQR----------AIRPYWRNYF 79 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcce--EEEEECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence 367999999999999999999998743 23444444332 2333444 78899999953 2333455554
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh--hhc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG--FFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 275 (308)
. .++++++|+|++...+..+. .+...+ ...++|+++++||+|+..... .+++.+.++. ...
T Consensus 80 ~---~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~i~~~l~~~~~~~ 147 (173)
T cd04155 80 E---NTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---------AEEIAEALNLHDLRD 147 (173)
T ss_pred c---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC---------HHHHHHHcCCcccCC
Confidence 3 34569999999865433221 111222 235799999999999875321 3334333321 111
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
...+++++||++|+|++++++||.+
T Consensus 148 ~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 148 RTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1235789999999999999999975
No 162
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.81 E-value=2.3e-19 Score=149.07 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=97.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|++..+.....++... ........++ .+.+|||||..+. ..+...++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~D~~g~~~~----------~~~~~~~~ 69 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-NYSATVTVDGKQVNLGLWDTAGQEEY----------DRLRPLSY 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccc----------cccchhhc
Confidence 48999999999999999999998652222222111 1112222332 5889999996531 11222333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCcccCC-------CCCchhhHHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKKNG-------GKRPEENLNDFQELIQ 271 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~ 271 (308)
..++++++|+|.++..+.... .+...+. ..++|+++|+||+|+.+..... ..+..+...++....+
T Consensus 70 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 146 (171)
T cd00157 70 ---PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG 146 (171)
T ss_pred ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence 334569999999876555442 1222222 2469999999999998654310 0112222333322222
Q ss_pred hhhcCCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 272 ~~~~~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
..+++++||++|+|+++++++|.+
T Consensus 147 -----~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 147 -----AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred -----CeEEEEeecCCCCCHHHHHHHHhh
Confidence 238999999999999999999875
No 163
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.8e-19 Score=139.13 Aligned_cols=158 Identities=17% Similarity=0.230 Sum_probs=122.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C--CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D--SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+.++|+.++|.+.||||||+-+.++..+....-.+.|....+..+.-. . ++.+|||.|. | +++.+.-
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagq-------E---ryrtiTT 88 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ-------E---RYRTITT 88 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccc-------h---hhhHHHH
Confidence 556799999999999999999999987654444455655554433222 2 5889999994 3 5777888
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHh------ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWL------GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~------~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.||+.+.+ +++++|.++..++... ..|. ...+.|+|+|+||||+.+++. +..+....+.+.++
T Consensus 89 ayyRgamg---fiLmyDitNeeSf~sv--qdw~tqIktysw~naqvilvgnKCDmd~eRv----is~e~g~~l~~~LG-- 157 (193)
T KOG0093|consen 89 AYYRGAMG---FILMYDITNEESFNSV--QDWITQIKTYSWDNAQVILVGNKCDMDSERV----ISHERGRQLADQLG-- 157 (193)
T ss_pred HHhhccce---EEEEEecCCHHHHHHH--HHHHHHheeeeccCceEEEEecccCCcccee----eeHHHHHHHHHHhC--
Confidence 88888776 7999999987665443 2232 236899999999999988765 56778888888886
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+|++||+.+.|++++|+.+...+...
T Consensus 158 ----fefFEtSaK~NinVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 158 ----FEFFETSAKENINVKQVFERLVDIICDK 185 (193)
T ss_pred ----hHHhhhcccccccHHHHHHHHHHHHHHH
Confidence 6899999999999999999998887654
No 164
>PRK11058 GTPase HflX; Provisional
Probab=99.81 E-value=1.5e-18 Score=164.27 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=106.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC--CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
.+.++|+++|.||||||||+|+|++.+.. +++.+++|.+. ..+.+.+ .+.+|||||+.... ...+...|...
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~--v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lve~f~~t- 270 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVY--AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLVAAFKAT- 270 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcee--eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHHHHHHHH-
Confidence 35689999999999999999999997642 55666666653 2343433 78999999984321 22222222222
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+.....+|++++|+|++++....+. ++...+...++|+++|+||+|+..... .... ...
T Consensus 271 ---l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-------~~~~----~~~--- 333 (426)
T PRK11058 271 ---LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-------PRID----RDE--- 333 (426)
T ss_pred ---HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh-------HHHH----HHh---
Confidence 2334556779999999987655443 223333345799999999999874211 1111 111
Q ss_pred cCCCC-EEEeecCCCCCHHHHHHHHHHHHH
Q 021750 275 QTAPP-WIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 275 ~~~~~-~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
...+ ++++||++|+|+++++++|.+.+.
T Consensus 334 -~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 334 -ENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred -cCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 1123 589999999999999999998774
No 165
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.80 E-value=5.1e-19 Score=147.62 Aligned_cols=154 Identities=23% Similarity=0.263 Sum_probs=96.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC-C-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN-D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 130 lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
++|++|||||||+|+|++.+. .+...+++|... ..+.++ + .+.+|||||+.+.....+ .+...++...
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~------~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR------GLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCC------CccHHHHHHH
Confidence 589999999999999999753 345555555443 334444 3 789999999854221111 1222333333
Q ss_pred CCccEEEEEEeCCCCC------ChhHH-----HHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 206 STLVSVFLLIDASIPA------KPIDL-----EYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~------~~~~~-----~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
..++++++|+|+++.. ...+. ++..+.. ..++|+++|+||+|+..... ...+.
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---------~~~~~- 142 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE---------LEEEL- 142 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH---------HHHHH-
Confidence 4466799999998763 22221 1111111 14799999999999975432 11111
Q ss_pred HHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 269 LIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..........+++++||+++.|++++++++.++
T Consensus 143 ~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 143 VRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 011112234789999999999999999998765
No 166
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.80 E-value=3.3e-19 Score=149.80 Aligned_cols=155 Identities=23% Similarity=0.277 Sum_probs=108.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
....+|+++|..|||||||+++|...+. ..+.++. ......+.+++ .+.+||.+|-. .++.+|+.|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~-~~~~pT~--g~~~~~i~~~~~~~~~~d~gG~~----------~~~~~w~~y 78 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEI-SETIPTI--GFNIEEIKYKGYSLTIWDLGGQE----------SFRPLWKSY 78 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSE-EEEEEES--SEEEEEEEETTEEEEEEEESSSG----------GGGGGGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccc-cccCccc--ccccceeeeCcEEEEEEeccccc----------cccccceee
Confidence 4456999999999999999999998643 2333333 34455666666 89999999942 345577787
Q ss_pred HHhcCCccEEEEEEeCCCCCChhH--HHHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH-hhh-
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPID--LEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ-GFF- 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~--~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~- 274 (308)
+... ++++||+|+++.....+ .++...+. ..++|++|++||+|+.+.. .. +++.+.+. ..+
T Consensus 79 ~~~~---~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~------~~---~~i~~~l~l~~l~ 146 (175)
T PF00025_consen 79 FQNA---DGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM------SE---EEIKEYLGLEKLK 146 (175)
T ss_dssp HTTE---SEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS------TH---HHHHHHTTGGGTT
T ss_pred cccc---ceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc------hh---hHHHhhhhhhhcc
Confidence 7654 45999999997654332 23344443 3679999999999988643 22 33333332 111
Q ss_pred -cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 -QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 -~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
...+.++.|||.+|+|+.+.++||.+.+
T Consensus 147 ~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 147 NKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp SSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 2457789999999999999999998753
No 167
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=1.6e-18 Score=149.03 Aligned_cols=158 Identities=20% Similarity=0.210 Sum_probs=99.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCc-ceeccCCCCceEEEE--EEE----------------------------------e
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKK-LALTSKTPGKTQCIN--HFR----------------------------------I 169 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~-~~~~~~~~~~t~~~~--~~~----------------------------------~ 169 (308)
+|+++|..|+|||||+.+|.+... ........+.+.... .+. .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 699999999999999999976410 000000001111100 000 0
Q ss_pred CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhccCC-CCEEEEeecCC
Q 021750 170 NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLGQNQ-IPMTLVFTKCD 247 (308)
Q Consensus 170 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~-~~~~~~~l~~~~~~~~-~pvivV~NK~D 247 (308)
..++.+|||||.. .+...++.....+|++++|+|++.+ ......+...++...+ .|+++|+||+|
T Consensus 82 ~~~i~~iDtPG~~-------------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGHE-------------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCChH-------------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchh
Confidence 1468999999942 2666777777778889999999874 2222222333333333 57999999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+..... .....+++.+.+........+++++||++|+|+++++++|.+.+
T Consensus 149 l~~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 149 LVKEEQ-----ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred ccCHHH-----HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 975321 12223444444433222347899999999999999999998754
No 168
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=1.7e-18 Score=174.20 Aligned_cols=161 Identities=21% Similarity=0.247 Sum_probs=114.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.||||||||+|+|++.+ ..+.+.+|+|.+... +..++ ++.++||||+..-....+....-+...+.|+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 589999999999999999999875 357788999987543 33444 7999999998542211000001112444554
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.. ...|++++|+|+++.... ..+...+.+.++|+++|+||+|+.+.+. ...+.+++.+.++ +++++
T Consensus 82 ~~-~~aD~vI~VvDat~ler~--l~l~~ql~e~giPvIvVlNK~Dl~~~~~-----i~id~~~L~~~LG------~pVvp 147 (772)
T PRK09554 82 LS-GDADLLINVVDASNLERN--LYLTLQLLELGIPCIVALNMLDIAEKQN-----IRIDIDALSARLG------CPVIP 147 (772)
T ss_pred hc-cCCCEEEEEecCCcchhh--HHHHHHHHHcCCCEEEEEEchhhhhccC-----cHHHHHHHHHHhC------CCEEE
Confidence 43 345789999999875443 3344555667899999999999875432 3344555555553 79999
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~ 302 (308)
+||++|+|++++.+.+.+..
T Consensus 148 iSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 148 LVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEeecCCCHHHHHHHHHHhh
Confidence 99999999999999998764
No 169
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=3.7e-18 Score=145.76 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=101.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC------c---ce-----eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK------K---LA-----LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~------~---~~-----~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~~~~ 188 (308)
.+|+++|.+++|||||+++|++.. . .. ......|+|.......+ ++ ++.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------ 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH------
Confidence 479999999999999999998631 0 00 01113466665433333 33 79999999964
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
.+....+.....+|++++|+|+..+...+..++..++...++| +|+|+||+|+....+ ..+...+++.
T Consensus 77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~----~~~~~~~~i~ 145 (195)
T cd01884 77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEE----LLELVEMEVR 145 (195)
T ss_pred -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHH----HHHHHHHHHH
Confidence 2555666667778889999999988777777777888778887 779999999974221 0111223344
Q ss_pred HHHHhhh--cCCCCEEEeecCCCCCH
Q 021750 268 ELIQGFF--QTAPPWIMTSSVTNQGR 291 (308)
Q Consensus 268 ~~~~~~~--~~~~~~~~vSA~~g~gi 291 (308)
+.+.... ...++++++||++|.|+
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCC
Confidence 4443321 13488999999999985
No 170
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.78 E-value=4.6e-18 Score=148.20 Aligned_cols=157 Identities=22% Similarity=0.249 Sum_probs=106.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce-----ec-------cCCCCceEE--------------------------EEEEE
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLA-----LT-------SKTPGKTQC--------------------------INHFR 168 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~-----~~-------~~~~~~t~~--------------------------~~~~~ 168 (308)
||+++|..++|||||+++|....+.. .. ....|.|.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999643211 00 000111110 01112
Q ss_pred eCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc--CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeec
Q 021750 169 IND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR--STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTK 245 (308)
Q Consensus 169 ~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK 245 (308)
..+ .+.++||||+. + +.+..+... ...|++++|+|+..+....+.++..++...++|+++|+||
T Consensus 81 ~~~~~i~liDtpG~~----------~---~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHE----------R---YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcH----------H---HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEC
Confidence 222 68999999963 2 333333333 2467899999999988888888899999899999999999
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHHh-----------------------hhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQG-----------------------FFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+|+.+... ..+..+++.+.+.. .+...+|+|.+||.+|+|+++|.+.|..+
T Consensus 148 ~D~~~~~~-----~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 148 IDLAPANI-----LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred ccccCHHH-----HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 99875332 33444455444431 12234699999999999999999888653
No 171
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.78 E-value=5.4e-18 Score=166.55 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=111.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCccee-ccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLAL-TSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~-~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.|+++|.+|+|||||+++|++...... ....+|.|.+.. .+..++ .+.+|||||.. . +.+.++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe----------~---f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE----------K---FISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH----------H---HHHHHH
Confidence 589999999999999999997431011 123456665543 344444 78999999953 2 455555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-hcCCCCE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-FQTAPPW 280 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 280 (308)
.....+|++++|+|++.+...+..+...++...++| +++|+||+|+.+... .....+++.+.+... +....++
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~-----~~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEE-----IKRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHH-----HHHHHHHHHHHHHHhCCCCCCcE
Confidence 666677889999999987666655556666667888 999999999975331 111122333333322 1124799
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++||++|+|+++++++|.+++..
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHh
Confidence 999999999999999999887765
No 172
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.78 E-value=1e-17 Score=164.16 Aligned_cols=158 Identities=21% Similarity=0.281 Sum_probs=109.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEe-CC-CEEEecCCCcccCCCchhhhhchHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRI-ND-SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~-~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
....++|+++|.+|+|||||+++|.+.++. ....+|+|.... .+.+ ++ .+.+|||||+. .|..+
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~--~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe----------~F~~~ 151 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVA--QGEAGGITQHIGAYHVENEDGKMITFLDTPGHE----------AFTSM 151 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc--cccCCceeecceEEEEEECCCcEEEEEECCCCc----------chhhH
Confidence 345679999999999999999999987532 233456665543 3333 33 79999999964 33334
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH---hhh
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ---GFF 274 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~ 274 (308)
+. +....+|++++|+|++++...+..+...++...++|+++++||+|+.+.. .+.+.......+ ..+
T Consensus 152 r~---rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-------~e~v~~~L~~~g~~~~~~ 221 (587)
T TIGR00487 152 RA---RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-------PDRVKQELSEYGLVPEDW 221 (587)
T ss_pred HH---hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-------HHHHHHHHHHhhhhHHhc
Confidence 33 34556677999999998776666666666666789999999999996532 112222211111 112
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....+++++||++|+|+++++++|...
T Consensus 222 ~~~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 222 GGDTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred CCCceEEEEECCCCCChHHHHHhhhhh
Confidence 223679999999999999999998643
No 173
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.78 E-value=1.3e-17 Score=135.31 Aligned_cols=156 Identities=25% Similarity=0.370 Sum_probs=104.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEE--Ee--CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHF--RI--NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 130 lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
++|.+|+|||||+++|++... ......++++...... .. ...+.+|||||+.+...... .+......++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~---~~~~~~~~~~~-- 74 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEV-AIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR---EREELARRVLE-- 74 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccc-cccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh---hHHHHHHHHHH--
Confidence 589999999999999998643 3344555555543322 22 33899999999876432221 11113333333
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHH--HHHHhhhcCCCCEEEe
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ--ELIQGFFQTAPPWIMT 283 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v 283 (308)
.++++++|+|++.........+.......+.|+++|+||+|+..... ..... ...........+++++
T Consensus 75 -~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 144 (163)
T cd00880 75 -RADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEE---------EEELLELRLLILLLLLGLPVIAV 144 (163)
T ss_pred -hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhh---------HHHHHHHHHhhcccccCCceEEE
Confidence 34569999999988777665544455557899999999999986432 22221 1111222345899999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~ 301 (308)
||+++.|++++++++.+.
T Consensus 145 sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 145 SALTGEGIDELREALIEA 162 (163)
T ss_pred eeeccCCHHHHHHHHHhh
Confidence 999999999999999875
No 174
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.78 E-value=5e-18 Score=144.00 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=98.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|+|||||++++....+.....++.+... ...+..++ .+.+|||+|.... ..+...++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~~~ 70 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEY----------ERLRPLSY 70 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhc----------cccchhhc
Confidence 3899999999999999999987654332222221111 22333333 4789999996421 11222222
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC------CCCCchhhHHHHHHHHHh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN------GGKRPEENLNDFQELIQG 272 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~ 272 (308)
..++++++++|.++..+..+.. +...+. ..+.|+++|+||+|+...... ...+..+....+.+.++
T Consensus 71 ---~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (187)
T cd04129 71 ---SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG- 146 (187)
T ss_pred ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC-
Confidence 3345689999998766554431 222221 246999999999998542210 01122233444444332
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..++|++||++|.|++++|+++.+.+-
T Consensus 147 ----~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 147 ----AKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred ----CcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 247999999999999999999987654
No 175
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.77 E-value=1.9e-17 Score=132.61 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=115.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
...+|.++|..|+||||++++|.+.. ...++ |...+.+....+++ ++.+||..|.. .++++|++||
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~--pt~gf~Iktl~~~~~~L~iwDvGGq~----------~lr~~W~nYf 81 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TDTIS--PTLGFQIKTLEYKGYTLNIWDVGGQK----------TLRSYWKNYF 81 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-ccccC--CccceeeEEEEecceEEEEEEcCCcc----------hhHHHHHHhh
Confidence 36799999999999999999999974 23333 34445566666666 89999999953 5777999999
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
...++ +++|+|.++....++. ++...+. ..+.|++|+.||.|+...-. .+.+....+.-.-.-...
T Consensus 82 estdg---lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~------~~~i~~~~~L~~l~ks~~ 152 (185)
T KOG0073|consen 82 ESTDG---LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS------LEEISKALDLEELAKSHH 152 (185)
T ss_pred hccCe---EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC------HHHHHHhhCHHHhccccC
Confidence 88776 8999999887665553 3333333 26799999999999985432 222322211111112235
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
++++-|||.+|+++.+-++|++.-+.+
T Consensus 153 ~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 153 WRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ceEEEEeccccccHHHHHHHHHHHHHH
Confidence 899999999999999999999987665
No 176
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.77 E-value=2.6e-18 Score=148.29 Aligned_cols=151 Identities=20% Similarity=0.213 Sum_probs=93.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceec------------------------------cCCCCceEEEE--EEEeCC-CE
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALT------------------------------SKTPGKTQCIN--HFRIND-SW 173 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~------------------------------~~~~~~t~~~~--~~~~~~-~~ 173 (308)
+|+++|.+|+|||||+++|+..... +. ....|+|.+.. .+..++ ++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKS-IFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence 5899999999999999999864321 11 01245666542 333444 79
Q ss_pred EEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-CEEEEeecCCCCCcc
Q 021750 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-PMTLVFTKCDKRKKK 252 (308)
Q Consensus 174 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~-pvivV~NK~Dl~~~~ 252 (308)
.++||||+. + +..........+|++++|+|++.+..........++...+. ++|+|+||+|+....
T Consensus 80 ~liDTpG~~----------~---~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~ 146 (208)
T cd04166 80 IIADTPGHE----------Q---YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS 146 (208)
T ss_pred EEEECCcHH----------H---HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC
Confidence 999999963 2 22333334456677999999998766555444455554454 578899999987422
Q ss_pred cCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021750 253 KNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
.. .......++.+.+........+++++||++|.|+++.
T Consensus 147 ~~---~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 147 EE---VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HH---HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 10 0111122332222222112357999999999999753
No 177
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.77 E-value=1.2e-17 Score=135.52 Aligned_cols=147 Identities=26% Similarity=0.319 Sum_probs=92.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
+||+++|.+|+|||||++++.+... .....++++.... .+..++ .+.+||+||.. .+..++..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~ 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF--ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE----------DYRAIRRL 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC--cCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc----------cchHHHHH
Confidence 5899999999999999999999863 3344455555443 244444 57889999953 22334444
Q ss_pred HHHhcCCccEEEEEEeCCCC-CCh------hHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 201 YFLNRSTLVSVFLLIDASIP-AKP------IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~-~~~------~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
++.... .++.++|.... ... ....+..... .+.|+++|+||+|+.... ..+...+.+...
T Consensus 70 ~~~~~~---~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~---------~~~~~~~~~~~~ 136 (161)
T TIGR00231 70 YYRAVE---SSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAK---------LKTHVAFLFAKL 136 (161)
T ss_pred HHhhhh---EEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcch---------hhHHHHHHHhhc
Confidence 443333 25556665543 111 1112222222 278999999999997532 112222222221
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMA 299 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~ 299 (308)
...+++++||++|.|+++++++|.
T Consensus 137 --~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 137 --NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred --cCCceEEeecCCCCCHHHHHHHhh
Confidence 135799999999999999999874
No 178
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.77 E-value=1.8e-17 Score=143.69 Aligned_cols=156 Identities=17% Similarity=0.229 Sum_probs=105.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....+||+++|.+|||||||+++++.+.+.....++.+.......+..++ .+.+|||+|.. .+..+.
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~----------~~~~~~ 75 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE----------KFGGLR 75 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch----------hhhhhh
Confidence 34457999999999999999998877655444555555554444443333 68899999943 334455
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..|+... +++++|+|.++..+..+. ..|+. ..+.|+++|+||+|+.+... ..+. ..+.+.
T Consensus 76 ~~~~~~~---~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~-----~~~~-~~~~~~---- 140 (215)
T PTZ00132 76 DGYYIKG---QCAIIMFDVTSRITYKNV--PNWHRDIVRVCENIPIVLVGNKVDVKDRQV-----KARQ-ITFHRK---- 140 (215)
T ss_pred HHHhccC---CEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECccCccccC-----CHHH-HHHHHH----
Confidence 5666544 448999999877665443 22321 24689999999999864321 1121 122221
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
....++++||++|.|++++|.+|.+.+..
T Consensus 141 --~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 141 --KNLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred --cCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 13679999999999999999999887643
No 179
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=2.1e-17 Score=141.42 Aligned_cols=173 Identities=20% Similarity=0.229 Sum_probs=110.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC---ceEEEEEEEeC--CCEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG---KTQCINHFRIN--DSWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~---~t~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+|+++|.+|||||||+|+|++...........+ ++.....+... ..+.+|||||+.+.....+ .+++.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~------~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPD------DYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHH------HHHHH
Confidence 5899999999999999999998543211111111 22222233222 3789999999875322111 12222
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCC----CchhhHHHHHHHHHhhhc-
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGK----RPEENLNDFQELIQGFFQ- 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~- 275 (308)
.....+|+++++.| ...+..+..+..++...++|+++|+||||+......... ...+.++++.+.+...+.
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 11234455666643 345666767777777778999999999999643221000 023445566666655443
Q ss_pred ---CCCCEEEeecC--CCCCHHHHHHHHHHHHHHHHhC
Q 021750 276 ---TAPPWIMTSSV--TNQGRDEILLHMAQLRNYWLKH 308 (308)
Q Consensus 276 ---~~~~~~~vSA~--~g~gi~el~~~i~~~~~~~~~~ 308 (308)
...++|.+|+. .++++..|.+.|...+..+++|
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 34789999999 6899999999999999887765
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.77 E-value=1.4e-17 Score=166.94 Aligned_cols=159 Identities=21% Similarity=0.309 Sum_probs=109.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....+.|+++|..|+|||||+++|.+.... .....|.|.... .+.+++ .+++|||||+. .|..++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~--~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe----------~F~~m~ 354 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA--AGEAGGITQHIGAYQVETNGGKITFLDTPGHE----------AFTAMR 354 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc--ccccCceeeeccEEEEEECCEEEEEEECCCCc----------cchhHH
Confidence 345679999999999999999999876532 233455655543 333434 79999999964 333344
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH--HHHhhhcC
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE--LIQGFFQT 276 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 276 (308)
. +....+|++++|+|++++...+..+...++...++|+|||+||+|+.... ......++.+ .+.+.+..
T Consensus 355 ~---rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~------~e~V~~eL~~~~~~~e~~g~ 425 (787)
T PRK05306 355 A---RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN------PDRVKQELSEYGLVPEEWGG 425 (787)
T ss_pred H---hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC------HHHHHHHHHHhcccHHHhCC
Confidence 3 33455677999999998776666666667777889999999999996532 1111222211 11111223
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.++++++||++|+|+++++++|...
T Consensus 426 ~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 426 DTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred CceEEEEeCCCCCCchHHHHhhhhh
Confidence 4789999999999999999998754
No 181
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7.4e-18 Score=162.57 Aligned_cols=158 Identities=25% Similarity=0.341 Sum_probs=121.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.||||||||.|+|++.+ ..+...||+|..... +...+ ++.++|+||.-.-.... .-+...++|+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S----~DE~Var~~l 77 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS----EDEKVARDFL 77 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC----chHHHHHHHH
Confidence 469999999999999999999985 678999999987643 44444 79999999985422111 1123777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.+ ...|+++.|+|+++-+... .+.-.+.+.++|+++++|++|..+.+. ..-+.+++.+.++ +|+++
T Consensus 78 l~-~~~D~ivnVvDAtnLeRnL--yltlQLlE~g~p~ilaLNm~D~A~~~G-----i~ID~~~L~~~LG------vPVv~ 143 (653)
T COG0370 78 LE-GKPDLIVNVVDATNLERNL--YLTLQLLELGIPMILALNMIDEAKKRG-----IRIDIEKLSKLLG------VPVVP 143 (653)
T ss_pred hc-CCCCEEEEEcccchHHHHH--HHHHHHHHcCCCeEEEeccHhhHHhcC-----CcccHHHHHHHhC------CCEEE
Confidence 64 3458899999999754433 334455578999999999999887654 4556778888886 99999
Q ss_pred eecCCCCCHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~ 303 (308)
+||++|+|++++++.+.+...
T Consensus 144 tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 144 TVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred EEeecCCCHHHHHHHHHHhcc
Confidence 999999999999999886543
No 182
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.77 E-value=9e-18 Score=165.21 Aligned_cols=151 Identities=26% Similarity=0.301 Sum_probs=106.0
Q ss_pred cCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCc
Q 021750 132 GRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTL 208 (308)
Q Consensus 132 G~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (308)
|.||||||||+|++++.. ..+.+.+|+|.+.. .+.+++ ++.+|||||......... -....+.|+.. ...
T Consensus 1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~----~e~v~~~~l~~-~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL----EEEVARDYLLN-EKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch----HHHHHHHHHhh-cCC
Confidence 899999999999999975 35778899988653 344444 789999999854221111 11245555443 356
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCC
Q 021750 209 VSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTN 288 (308)
Q Consensus 209 ~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g 288 (308)
|++++|+|+++.... ..+...+.+.++|+++|+||+|+.+... ...+.+.+.+.++ .+++++||++|
T Consensus 74 DvvI~VvDat~ler~--l~l~~ql~~~~~PiIIVlNK~Dl~~~~~-----i~~d~~~L~~~lg------~pvv~tSA~tg 140 (591)
T TIGR00437 74 DLVVNVVDASNLERN--LYLTLQLLELGIPMILALNLVDEAEKKG-----IRIDEEKLEERLG------VPVVPTSATEG 140 (591)
T ss_pred CEEEEEecCCcchhh--HHHHHHHHhcCCCEEEEEehhHHHHhCC-----ChhhHHHHHHHcC------CCEEEEECCCC
Confidence 889999999874332 2333344456899999999999875432 2223444444443 78999999999
Q ss_pred CCHHHHHHHHHHHH
Q 021750 289 QGRDEILLHMAQLR 302 (308)
Q Consensus 289 ~gi~el~~~i~~~~ 302 (308)
+|++++++++.+..
T Consensus 141 ~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 141 RGIERLKDAIRKAI 154 (591)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 183
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=9.9e-19 Score=139.07 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=117.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC--------C----CEEEecCCCcccCCCchhhhhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN--------D----SWYLVDLPGYGYAAAPRELRTD 193 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~--------~----~~~liDtpG~~~~~~~~~~~~~ 193 (308)
+|...+|.+||||||++.++..+++...--.+.|+....+.+.++ + .+.+|||+| +| +
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG-------QE---R 79 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG-------QE---R 79 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc-------HH---H
Confidence 477889999999999999999886543333333443332222221 1 378999999 44 8
Q ss_pred hHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-------CCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 194 WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 194 ~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
|+++.-.|++.+-+ .++++|.++..++.+. ..|+.. .+.-+++++||+||.+.+. +.+++...+
T Consensus 80 FRSLTTAFfRDAMG---FlLiFDlT~eqSFLnv--rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----Vs~~qa~~L 150 (219)
T KOG0081|consen 80 FRSLTTAFFRDAMG---FLLIFDLTSEQSFLNV--RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----VSEDQAAAL 150 (219)
T ss_pred HHHHHHHHHHhhcc---ceEEEeccchHHHHHH--HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----hhHHHHHHH
Confidence 89999999998887 6899999987776653 455542 4566899999999998765 567777777
Q ss_pred HHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 267 QELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 267 ~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+.++ .|||++||-+|.|+++..+.+.+++-++.
T Consensus 151 a~kyg------lPYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 151 ADKYG------LPYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred HHHhC------CCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 77775 89999999999999999888887766543
No 184
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.5e-17 Score=129.87 Aligned_cols=154 Identities=20% Similarity=0.304 Sum_probs=120.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..++|-.++|.-|||||+|+..+...++++.-..+.|.......+++.+ ++.+|||.| ++ +|+...+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtag-------qe---rfravtr 78 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG-------QE---RFRAVTR 78 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeeccc-------HH---HHHHHHH
Confidence 4568999999999999999999999888766666666666555666655 688999999 44 8899999
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.||+.+.+ .++|+|.+...+... +..|+.. .+..+++++||.|+...++ +..++.+++.+.-+
T Consensus 79 syyrgaag---almvyditrrstynh--lsswl~dar~ltnpnt~i~lignkadle~qrd----v~yeeak~faeeng-- 147 (215)
T KOG0097|consen 79 SYYRGAAG---ALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKADLESQRD----VTYEEAKEFAEENG-- 147 (215)
T ss_pred HHhccccc---eeEEEEehhhhhhhh--HHHHHhhhhccCCCceEEEEecchhhhhhccc----CcHHHHHHHHhhcC--
Confidence 99999888 689999987655544 3556643 5667899999999987765 56677777766543
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..++++||++|+|+++.|-...+.
T Consensus 148 ----l~fle~saktg~nvedafle~akk 171 (215)
T KOG0097|consen 148 ----LMFLEASAKTGQNVEDAFLETAKK 171 (215)
T ss_pred ----eEEEEecccccCcHHHHHHHHHHH
Confidence 779999999999999876554433
No 185
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=1e-17 Score=146.95 Aligned_cols=177 Identities=21% Similarity=0.206 Sum_probs=114.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
....|+++|.||||||||.|.+++.+. ..++..+.||+.. ..+.-+. +++++||||+........ .....++...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv-~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~-~~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKV-SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRR-HHLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcc-ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhh-HHHHHHhhhC
Confidence 345899999999999999999999854 6677777777753 2333333 899999999986443221 1122234444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-cCCCCEEEEeecCCCCCcccCC----CCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-QNQIPMTLVFTKCDKRKKKKNG----GKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-~~~~pvivV~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 275 (308)
+-.....+|+|+.|+|+++.-......++..+. -..+|-++|.||+|....+..- .......+....-.+.+.|.
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 555666778899999999654444433344333 2579999999999988654310 00011111111112222221
Q ss_pred -------------C--CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 -------------T--APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 -------------~--~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+ +..+|.+||++|+||+++.+||....
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 1 24589999999999999999987653
No 186
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.76 E-value=2.3e-17 Score=164.06 Aligned_cols=160 Identities=21% Similarity=0.310 Sum_probs=108.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE----EEEe---CCCEEEecCCCcccCCCchhhhhch
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN----HFRI---NDSWYLVDLPGYGYAAAPRELRTDW 194 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~----~~~~---~~~~~liDtpG~~~~~~~~~~~~~~ 194 (308)
....+.|+++|.+|+|||||+++|.+..+. ....+|.|.... .+.. +..+.+|||||+. .|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~--~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe----------~F 308 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIA--QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE----------AF 308 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCc--cccCCccccccceEEEEEEecCCceEEEEEECCcHH----------HH
Confidence 345679999999999999999999986532 222334443321 1222 1379999999953 44
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH--HHh
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL--IQG 272 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~ 272 (308)
..++..++. .+|++++|+|++++...+..+...++...++|+++|+||+|+.... .....+.+... +..
T Consensus 309 ~~mr~rg~~---~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~------~e~v~~eL~~~~ll~e 379 (742)
T CHL00189 309 SSMRSRGAN---VTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN------TERIKQQLAKYNLIPE 379 (742)
T ss_pred HHHHHHHHH---HCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC------HHHHHHHHHHhccchH
Confidence 445555443 4566999999998776666666666777789999999999997532 11111222111 111
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.++..++++++||++|+|+++++++|..+.
T Consensus 380 ~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 122247899999999999999999998764
No 187
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.75 E-value=3.2e-17 Score=161.71 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=111.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEe---CC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRI---ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~---~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
-|+++|.+++|||||+++|++.+... ......|.|.+.....+ ++ .+.+|||||+. + +.+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe----------~---fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE----------K---FLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH----------H---HHHHH
Confidence 48999999999999999999743111 12233567765533222 23 57899999952 2 55555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
......+|++++|+|++.+...+..+...++...++| ++||+||+|+.+... .....+++.+.+........++
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~-----~~~v~~ei~~~l~~~~~~~~~i 143 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEAR-----IAEVRRQVKAVLREYGFAEAKL 143 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHH-----HHHHHHHHHHHHHhcCCCCCcE
Confidence 5666778889999999988777777777777766777 579999999975321 2222334444443322224789
Q ss_pred EEeecCCCCCHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
|++||++|+|+++|+++|.++..
T Consensus 144 i~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 144 FVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred EEEeCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999987654
No 188
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.75 E-value=4.5e-17 Score=160.26 Aligned_cols=156 Identities=22% Similarity=0.257 Sum_probs=104.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC-------cceeccC------CCCceEEEEE--EEe---CC---CEEEecCCCccc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK-------KLALTSK------TPGKTQCINH--FRI---ND---SWYLVDLPGYGY 183 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~-------~~~~~~~------~~~~t~~~~~--~~~---~~---~~~liDtpG~~~ 183 (308)
+.+|+++|.+++|||||+++|+... +...+.+ ..|.|..... +.+ ++ .+.+|||||+.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~- 81 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV- 81 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-
Confidence 4589999999999999999998742 1111211 2356654322 222 22 58999999975
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhH
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENL 263 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~ 263 (308)
+|...+..++..+ |++++|+|++++.+.+......+....++|+++|+||+|+.... ..+..
T Consensus 82 ---------dF~~~v~~~l~~a---D~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~------~~~~~ 143 (595)
T TIGR01393 82 ---------DFSYEVSRSLAAC---EGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD------PERVK 143 (595)
T ss_pred ---------HHHHHHHHHHHhC---CEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC------HHHHH
Confidence 3444555565554 45899999998877666543333345689999999999986422 22223
Q ss_pred HHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 264 NDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++.+.++. ....++++||++|.|+++++++|.+.+
T Consensus 144 ~el~~~lg~---~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 144 KEIEEVIGL---DASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHHHhCC---CcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 344443321 113589999999999999999998765
No 189
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1e-17 Score=155.35 Aligned_cols=167 Identities=24% Similarity=0.234 Sum_probs=114.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCccc-CCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGY-AAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~-~~~~~~~~~~~~~~~~~~ 201 (308)
++|+|+|+||||||||+|+|.+.+. .++++.+|+|++.. .+++++ .+.+.||+|+.+ ....-| .+ -....
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~dr-sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE---~~--gI~rA 342 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDR-SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIE---AL--GIERA 342 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc-eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhH---HH--hHHHH
Confidence 5999999999999999999999865 89999999999863 455566 899999999987 222222 10 11222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
......+|++++|+|+.......+..+.+.+.. ...|++++.||.|+...-... ....+......
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~---~~~~~~~~~~~ 419 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM---TKIPVVYPSAE 419 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccc---cCCceeccccc
Confidence 244455678999999976666666655555542 347899999999998652110 00000011111
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.. +......++|+++++|++.|.+.+.+.+..
T Consensus 420 ~~---~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 420 GR---SVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred cC---cccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 11 122445669999999999999999887654
No 190
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.75 E-value=4.1e-17 Score=159.66 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=103.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-ceEEEE--EEE----------------eC---CCEEEecCCCcc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-KTQCIN--HFR----------------IN---DSWYLVDLPGYG 182 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-~t~~~~--~~~----------------~~---~~~~liDtpG~~ 182 (308)
.|-|+++|.+|+|||||+|+|.+... ....+| +|.... .+. +. ..+.+|||||+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v---~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV---AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc---ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 45799999999999999999998743 222222 222111 000 00 138899999953
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCC-----
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGK----- 257 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~----- 257 (308)
.|..++..++. .+|++++|+|++++...+..+...++...++|+++|+||+|+.........
T Consensus 81 ----------~f~~l~~~~~~---~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 81 ----------AFTNLRKRGGA---LADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred ----------hHHHHHHHHHh---hCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHH
Confidence 34445555443 455699999999877766666666777778999999999999742110000
Q ss_pred ---Cchh--------hHHHHHHHHHh------------hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 258 ---RPEE--------NLNDFQELIQG------------FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 258 ---~~~~--------~~~~~~~~~~~------------~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.... ....+...+.+ .+....+++++||++|+|+++|+.+|..+..
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0000 00111111111 1223479999999999999999999876554
No 191
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=5.3e-17 Score=144.23 Aligned_cols=162 Identities=20% Similarity=0.233 Sum_probs=108.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+.|++.|.||||||||++.+++.+ +.+.++|.||..+ .++..++ ++.++||||+.+...... .......-
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er--N~IE~qAi 241 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER--NEIERQAI 241 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh--cHHHHHHH
Confidence 466799999999999999999999986 6788999998864 5666665 899999999976432211 11111111
Q ss_pred HHHHhcCCccEEEEEEeCCCC--CChhH-HHHHHHh-ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIP--AKPID-LEYASWL-GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~--~~~~~-~~l~~~~-~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
..+....+ +|+|++|++.. .+... ..+...+ ...+.|+++|+||+|..+. +.+++....+....
T Consensus 242 ~AL~hl~~--~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~---------e~~~~~~~~~~~~~- 309 (346)
T COG1084 242 LALRHLAG--VILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE---------EKLEEIEASVLEEG- 309 (346)
T ss_pred HHHHHhcC--eEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch---------hHHHHHHHHHHhhc-
Confidence 22233343 59999999853 33222 1222222 2356899999999998853 33445444443322
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
......+++..+.+++.+...+...
T Consensus 310 -~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 310 -GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred -cccccceeeeehhhHHHHHHHHHHH
Confidence 2446788999999999888777665
No 192
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.74 E-value=3.9e-17 Score=130.78 Aligned_cols=142 Identities=25% Similarity=0.294 Sum_probs=98.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
.||+++|++|+|||||+++|.+.+. .+.. |..+ .+.+. ++||||--- +.+.+.+..+..+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~--~~~K----Tq~i---~~~~~--~IDTPGEyi---------E~~~~y~aLi~ta 61 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI--RYKK----TQAI---EYYDN--TIDTPGEYI---------ENPRFYHALIVTA 61 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC--CcCc----ccee---Eeccc--EEECChhhe---------eCHHHHHHHHHHH
Confidence 4899999999999999999998642 1222 2222 22233 499999321 2233555666667
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeec
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA 285 (308)
..+++|++|.|++.+.....-.+... ..+|+|-|+||+|+..+ .++++...+.+.... ...+|++|+
T Consensus 62 ~dad~V~ll~dat~~~~~~pP~fa~~---f~~pvIGVITK~Dl~~~--------~~~i~~a~~~L~~aG--~~~if~vS~ 128 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVFPPGFASM---FNKPVIGVITKIDLPSD--------DANIERAKKWLKNAG--VKEIFEVSA 128 (143)
T ss_pred hhCCEEEEEecCCCCCccCCchhhcc---cCCCEEEEEECccCccc--------hhhHHHHHHHHHHcC--CCCeEEEEC
Confidence 77889999999998766544333333 46999999999999842 233555555554432 246799999
Q ss_pred CCCCCHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQ 300 (308)
Q Consensus 286 ~~g~gi~el~~~i~~ 300 (308)
.+|+|+++|.++|.+
T Consensus 129 ~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 129 VTGEGIEELKDYLEE 143 (143)
T ss_pred CCCcCHHHHHHHHhC
Confidence 999999999999853
No 193
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.74 E-value=3.6e-17 Score=139.50 Aligned_cols=156 Identities=17% Similarity=0.257 Sum_probs=118.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|.+|||||+|+.++....+...+.++...+. ...+.+++ .+.++||+|.. ++..+...|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~----------~~~~~~~~~ 71 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQE----------EFSAMRDLY 71 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcc----------cChHHHHHh
Confidence 35899999999999999999999988776666666333 34444444 57799999932 455577777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+...++ .++|++.++..++... .+...+ .....|+++|+||+|+...+. +..++.+.+...+.
T Consensus 72 ~~~~~g---F~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----V~~eeg~~la~~~~----- 139 (196)
T KOG0395|consen 72 IRNGDG---FLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQ----VSEEEGKALARSWG----- 139 (196)
T ss_pred hccCcE---EEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccc----cCHHHHHHHHHhcC-----
Confidence 777766 6888888887777654 222222 235689999999999998654 56777777755553
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
++++++||+.+.+++++|..+.+.++.
T Consensus 140 -~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 -CAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred -CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 789999999999999999999987765
No 194
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.74 E-value=1.8e-18 Score=137.54 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.|||+++|..-||||||+-+++.++|....-.+....+....+.+++ .+.+|||+|.. +|..+-.-|
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQE----------rfHALGPIY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQE----------RFHALGPIY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchH----------hhhccCceE
Confidence 57999999999999999999999876432211111111111222222 68899999943 555566678
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
|+..++ +++|+|.++..+++.. ..|..+ ..+-++||+||+||.+.+. +..++.+.+.+..+
T Consensus 83 YRgSnG---alLVyDITDrdSFqKV--KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----Vt~qeAe~YAesvG---- 149 (218)
T KOG0088|consen 83 YRGSNG---ALLVYDITDRDSFQKV--KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----VTRQEAEAYAESVG---- 149 (218)
T ss_pred EeCCCc---eEEEEeccchHHHHHH--HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----hhHHHHHHHHHhhc----
Confidence 888777 7999999988777653 445443 5688999999999987765 45666667766665
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..++++||+.+.||.|+|+.+.+.+-+
T Consensus 150 --A~y~eTSAk~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 150 --ALYMETSAKDNVGISELFESLTAKMIE 176 (218)
T ss_pred --hhheecccccccCHHHHHHHHHHHHHH
Confidence 779999999999999999999876544
No 195
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.74 E-value=2.3e-17 Score=128.96 Aligned_cols=113 Identities=34% Similarity=0.475 Sum_probs=83.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+|+|+|.+|+|||||+|+|++.+ ...++..+++|... ..+.+++ .+.++||||+.+...... +......++.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~----~~~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN----DGKEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH----HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccc-cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH----HHHHHHHHHH
Confidence 69999999999999999999854 35677778877765 3444555 689999999876432221 1123344555
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeec
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTK 245 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK 245 (308)
....++++++|+|++.+....+.++.+++. .++|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 556778899999988755555667777776 88999999998
No 196
>COG2262 HflX GTPases [General function prediction only]
Probab=99.73 E-value=8.8e-17 Score=146.88 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=109.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEe--CCCEEEecCCCcccCCCchhhhhchHH
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRI--NDSWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
.+.+.+.|+++|++|+|||||+|+|++...+. .+....|.+ ...+.+ +..+.+.||-|++.+- +..+-..|+
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L-P~~LV~AFk- 263 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYV--ADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL-PHPLVEAFK- 263 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeec--cccccccccCceeEEEeCCCceEEEecCccCcccC-ChHHHHHHH-
Confidence 45688999999999999999999999875332 222222222 122333 3479999999998633 233222333
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHH----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDL----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
..+.+...+|++++|+|++++...... +++.-+.-..+|+|+|.||+|+.... . ....+..
T Consensus 264 ---sTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~--------~----~~~~~~~ 328 (411)
T COG2262 264 ---STLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE--------E----ILAELER 328 (411)
T ss_pred ---HHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch--------h----hhhhhhh
Confidence 334556677889999999998443332 23333334679999999999987532 1 1122221
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.. ...+++||++|+|++.|++.|.+.+..
T Consensus 329 ~~---~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 329 GS---PNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred cC---CCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 11 258999999999999999999998764
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.73 E-value=3.5e-17 Score=155.94 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------eec------cCCCCceEEEEEEEe--CC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-----------------------ALT------SKTPGKTQCINHFRI--ND 171 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------~~~------~~~~~~t~~~~~~~~--~~ 171 (308)
+...+|+++|.+|+|||||+++|+..... +.+ ...+|+|.+.....+ ++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 44568999999999999999999853210 000 114678877644433 33
Q ss_pred -CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC--CCChhHHHHHHHhccCCC-CEEEEeecCC
Q 021750 172 -SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI--PAKPIDLEYASWLGQNQI-PMTLVFTKCD 247 (308)
Q Consensus 172 -~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~--~~~~~~~~l~~~~~~~~~-pvivV~NK~D 247 (308)
.+.+|||||+.+ +++.++.....+|++++|+|+++ +......+...++...+. |+++|+||+|
T Consensus 84 ~~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~D 150 (425)
T PRK12317 84 YYFTIVDCPGHRD-------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMD 150 (425)
T ss_pred eEEEEEECCCccc-------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccc
Confidence 799999999632 33333444556788999999987 554444444455554554 6899999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhh-c-CCCCEEEeecCCCCCHHHHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQGFF-Q-TAPPWIMTSSVTNQGRDEIL 295 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~vSA~~g~gi~el~ 295 (308)
+....+. ......+++.+.+.... . ...+++++||++|+|++++.
T Consensus 151 l~~~~~~---~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 151 AVNYDEK---RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccccHH---HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 9752110 01112233333332211 1 13679999999999998743
No 198
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.72 E-value=2.6e-16 Score=138.07 Aligned_cols=151 Identities=24% Similarity=0.254 Sum_probs=98.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCC-chhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAA-PRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~ 202 (308)
+|+++|.+|+|||||+|+|++.. ..+...+++|.. ...+.+++ .+.+|||||+.+... ..+ +..+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~-------~~~~~l 72 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKG-------RGRQVI 72 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchh-------HHHHHH
Confidence 79999999999999999999875 334556666643 33444555 789999999864321 111 222333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-------------------------------------------HHHHHhc------
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-------------------------------------------EYASWLG------ 233 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-------------------------------------------~l~~~~~------ 233 (308)
.....++++++|+|+++.....+. .+...+.
T Consensus 73 ~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~ 152 (233)
T cd01896 73 AVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHN 152 (233)
T ss_pred HhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeee
Confidence 334455679999998764321110 0011110
Q ss_pred ---------------------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHH
Q 021750 234 ---------------------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 234 ---------------------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 292 (308)
...+|+++|+||+|+... +..+.+ . ...+++++||++|.|++
T Consensus 153 ~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---------~~~~~~----~----~~~~~~~~SA~~g~gi~ 215 (233)
T cd01896 153 ADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI---------EELDLL----A----RQPNSVVISAEKGLNLD 215 (233)
T ss_pred EEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH---------HHHHHH----h----cCCCEEEEcCCCCCCHH
Confidence 134699999999998742 223322 1 12569999999999999
Q ss_pred HHHHHHHHHHH
Q 021750 293 EILLHMAQLRN 303 (308)
Q Consensus 293 el~~~i~~~~~ 303 (308)
++++.|.+.+.
T Consensus 216 ~l~~~i~~~L~ 226 (233)
T cd01896 216 ELKERIWDKLG 226 (233)
T ss_pred HHHHHHHHHhC
Confidence 99999988664
No 199
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.72 E-value=1.7e-16 Score=136.09 Aligned_cols=158 Identities=19% Similarity=0.204 Sum_probs=101.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-----C---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-----D---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
||+++|.+|||||||++++++..+.....++.|.+.....+.++ + .+.+|||+|.. ++..+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e----------~~~~l~ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE----------SVKSTR 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch----------hHHHHH
Confidence 89999999999999999999987655444555544444444442 2 47899999953 556677
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-------------------------cCCCCEEEEeecCCCCCccc
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-------------------------QNQIPMTLVFTKCDKRKKKK 253 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-------------------------~~~~pvivV~NK~Dl~~~~~ 253 (308)
..||+.++ ++++|+|.++..++.+. ..|+. ..+.|+++|+||+|+.+.+.
T Consensus 72 ~~~yr~ad---~iIlVyDvtn~~Sf~~l--~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 72 AVFYNQVN---GIILVHDLTNRKSSQNL--QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred HHHhCcCC---EEEEEEECcChHHHHHH--HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 77777654 48999999988776554 23321 13689999999999976543
Q ss_pred CCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCC-------CCHHHHHHHHHHHHHHH
Q 021750 254 NGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTN-------QGRDEILLHMAQLRNYW 305 (308)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-------~gi~el~~~i~~~~~~~ 305 (308)
. ..+....-...+.+.+ +.+.++.++.+. .+-..|...+...++.+
T Consensus 147 ~----~~~~~~~~~~~ia~~~--~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (202)
T cd04102 147 S----SGNLVLTARGFVAEQG--NAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEKR 199 (202)
T ss_pred c----chHHHhhHhhhHHHhc--CCceEEEecCCcccccCCCccHHHHHHHHHHHHHhh
Confidence 2 1111111122222222 367888888754 24455555555555543
No 200
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.71 E-value=9.7e-17 Score=142.12 Aligned_cols=158 Identities=23% Similarity=0.222 Sum_probs=111.7
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCC-CchhhhhchH
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAA-APRELRTDWD 195 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~-~~~~~~~~~~ 195 (308)
.++.|...|++||+|+||||||+|.|++.+ ..+...+.||.. ...+.+++ ++.++|+||+.++. .+.+.+
T Consensus 58 V~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG---- 131 (365)
T COG1163 58 VKKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG---- 131 (365)
T ss_pred EeccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCc----
Confidence 346677899999999999999999999976 456667766664 46677777 89999999998753 333312
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHH-------------------------------------------HHHHHh
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDL-------------------------------------------EYASWL 232 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~-------------------------------------------~l~~~~ 232 (308)
++.+.....+|++++|+|+.......+. .+...+
T Consensus 132 ---~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL 208 (365)
T COG1163 132 ---RQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAIL 208 (365)
T ss_pred ---ceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHH
Confidence 2333455667889999999754321110 111111
Q ss_pred cc---------------------------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeec
Q 021750 233 GQ---------------------------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285 (308)
Q Consensus 233 ~~---------------------------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA 285 (308)
.+ ..+|.++|+||+|+.+. +.++.+.+. ..++++||
T Consensus 209 ~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~---------e~~~~l~~~--------~~~v~isa 271 (365)
T COG1163 209 REYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL---------EELERLARK--------PNSVPISA 271 (365)
T ss_pred HHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---------HHHHHHHhc--------cceEEEec
Confidence 10 46899999999999862 223333332 37999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 286 ~~g~gi~el~~~i~~~~~ 303 (308)
..+.|+++|.+.|.+.+.
T Consensus 272 ~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 272 KKGINLDELKERIWDVLG 289 (365)
T ss_pred ccCCCHHHHHHHHHHhhC
Confidence 999999999999998765
No 201
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.71 E-value=1.3e-16 Score=151.02 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=101.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEE----------------EEEe-------------CCCEE
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCIN----------------HFRI-------------NDSWY 174 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~----------------~~~~-------------~~~~~ 174 (308)
..+|+++|.+++|||||+++|.+..... ......|.|.... .+.. ...+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 4589999999999999999997631100 0000112222111 0000 23689
Q ss_pred EecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccCC-CCEEEEeecCCCCCcc
Q 021750 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKK 252 (308)
Q Consensus 175 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~ 252 (308)
+|||||.. + +.+.++.....+|++++|+|++.+. ..+..+...++...+ +|+++|+||+|+.+..
T Consensus 84 liDtPGh~----------~---f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 84 FVDAPGHE----------T---LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred EEECCCHH----------H---HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHH
Confidence 99999953 2 4555666666678899999999765 333333344444443 5689999999997532
Q ss_pred cCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 253 KNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
. ..+..+++.+.+...+...++++++||++|+|+++++++|.+.+
T Consensus 151 ~-----~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 151 K-----ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred H-----HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 1 12223344443433222357899999999999999999998754
No 202
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.71 E-value=4.7e-16 Score=132.97 Aligned_cols=166 Identities=15% Similarity=0.192 Sum_probs=106.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCch-hhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPR-ELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~ 202 (308)
+|+|+|.+|||||||+|+|++.+........++.|.... ...+++ ++.++||||+.+..... .+. ..+.+.+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~---~~i~~~~~ 78 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS---KEIVRCLS 78 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHH---HHHHHHHH
Confidence 799999999999999999999763222222345555432 233444 79999999998643322 211 12333344
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhH----HHHHHHHHhh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENL----NDFQELIQGF 273 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~ 273 (308)
....+.+++++|+|+.. .+..+..+.+++.. .-.++++|+|++|...... .++.+ ..++..+...
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~-----~~~~~~~~~~~l~~l~~~c 152 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT-----LEDYLENSCEALKRLLEKC 152 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCc-----HHHHHHhccHHHHHHHHHh
Confidence 44567788999999987 67666666666643 2368999999999875432 11111 2233333321
Q ss_pred hcCCCCEEEee-----cCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTS-----SVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vS-----A~~g~gi~el~~~i~~~~~~ 304 (308)
...++..+ +..+.++++|++.|.+++.+
T Consensus 153 ---~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 153 ---GGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred ---CCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 12344443 56688999999999999886
No 203
>PRK12736 elongation factor Tu; Reviewed
Probab=99.71 E-value=3.4e-16 Score=147.63 Aligned_cols=161 Identities=17% Similarity=0.221 Sum_probs=110.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc---------e-----eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL---------A-----LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~---------~-----~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~~ 186 (308)
...+|+++|..++|||||+++|++.... . ......|+|.+.....+ ++ ++.++||||+.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH----
Confidence 3468999999999999999999873100 0 01124577776654444 22 68999999953
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhH-H
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENL-N 264 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~-~ 264 (308)
++...++.....+|++++|+|+..+...+..++..++...++| +|+|+||+|+.+..+ ..+.+ +
T Consensus 87 ---------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~-----~~~~i~~ 152 (394)
T PRK12736 87 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEE-----LLELVEM 152 (394)
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHH-----HHHHHHH
Confidence 2566666777778899999999988777777777888778898 678899999974321 11111 2
Q ss_pred HHHHHHHhhh--cCCCCEEEeecCCCC--------CHHHHHHHHHHHH
Q 021750 265 DFQELIQGFF--QTAPPWIMTSSVTNQ--------GRDEILLHMAQLR 302 (308)
Q Consensus 265 ~~~~~~~~~~--~~~~~~~~vSA~~g~--------gi~el~~~i~~~~ 302 (308)
++.+.+.... ....+++++||++|. ++.++++.+.+.+
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 153 EVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 3333333221 123689999999983 5677777776654
No 204
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.8e-17 Score=132.52 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=119.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.....+|+++|-.|+||||++++|-..+. ++..|.....+..+.+.+ ++.+||..|.. +++.+|++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~---vttvPTiGfnVE~v~ykn~~f~vWDvGGq~----------k~R~lW~~ 80 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEI---VTTVPTIGFNVETVEYKNISFTVWDVGGQE----------KLRPLWKH 80 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCc---ccCCCccccceeEEEEcceEEEEEecCCCc----------ccccchhh
Confidence 34456999999999999999999988753 344777777777777776 89999999953 67779999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhH--HHHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPID--LEYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GF 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~--~~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~ 273 (308)
||.+.++ +|||+|+++.....+ .++...+.. ...|+++.+||.|+..... ..++.+.++ ..
T Consensus 81 Y~~~t~~---lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---------~~ei~~~L~l~~l 148 (181)
T KOG0070|consen 81 YFQNTQG---LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---------AAEITNKLGLHSL 148 (181)
T ss_pred hccCCcE---EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC---------HHHHHhHhhhhcc
Confidence 9988876 899999998765433 355555553 4799999999999997653 233333332 11
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
-.....+..|+|.+|+|+.|.++|+.+.+..
T Consensus 149 ~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 149 RSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred CCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 2234678889999999999999999988765
No 205
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.70 E-value=1.1e-16 Score=139.19 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=91.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc----e-------------------------eccCCCCceEEEE--EEEeCC-CEE
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL----A-------------------------LTSKTPGKTQCIN--HFRIND-SWY 174 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~----~-------------------------~~~~~~~~t~~~~--~~~~~~-~~~ 174 (308)
+|+++|.+++|||||+.+|+..... . ......|+|++.. .+.+++ .+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999742100 0 0011335666543 333444 799
Q ss_pred EecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-------CChhHHHHHHHhccCC-CCEEEEeecC
Q 021750 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-------AKPIDLEYASWLGQNQ-IPMTLVFTKC 246 (308)
Q Consensus 175 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~-------~~~~~~~l~~~~~~~~-~pvivV~NK~ 246 (308)
+|||||+.. +...++.....++++++|+|++.+ ...+..+...+....+ +|+++|+||+
T Consensus 81 liDtpG~~~-------------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRD-------------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred EEECCChHH-------------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 999999531 445555555667889999999874 2222233333333344 6899999999
Q ss_pred CCCCcccCCCCCchhhHHHHHHH----HHhhh--cCCCCEEEeecCCCCCHH
Q 021750 247 DKRKKKKNGGKRPEENLNDFQEL----IQGFF--QTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~vSA~~g~gi~ 292 (308)
|+..... .....+++.+. +.... ...++++++||++|+|++
T Consensus 148 Dl~~~~~-----~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 148 DDVTVNW-----SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccc-----cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9984210 11222333333 32211 113789999999999986
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.70 E-value=2.4e-16 Score=149.24 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=105.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCccee--ccCCCCceEEEEE----------------EEe-------------CCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLAL--TSKTPGKTQCINH----------------FRI-------------NDS 172 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~--~~~~~~~t~~~~~----------------~~~-------------~~~ 172 (308)
...+|+++|..++|||||+.+|.+.. ... .....|.|..... +.. ...
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 34689999999999999999997631 100 1112233333210 100 136
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccCC-CCEEEEeecCCCCC
Q 021750 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQNQ-IPMTLVFTKCDKRK 250 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~ 250 (308)
+.+|||||.. .+...++..+..+|++++|+|++.+. .....+...++...+ .|+++|+||+|+.+
T Consensus 87 i~liDtPG~~-------------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 87 VSFVDAPGHE-------------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred EEEEECCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 8999999942 26677788877788899999999765 444444444444444 46899999999975
Q ss_pred cccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 251 KKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
... ..+..+++.+.+........+++++||++|+|+++|+++|.+.+
T Consensus 154 ~~~-----~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 154 KER-----ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred chh-----HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 321 12223344443332222347899999999999999999998764
No 207
>CHL00071 tufA elongation factor Tu
Probab=99.70 E-value=2.9e-16 Score=148.75 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=102.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc------ce--------eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK------LA--------LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAA 185 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~------~~--------~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~ 185 (308)
....+|+++|.+++|||||+++|++... .. ......|+|.+.....+ ++ ++.++||||+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 3446899999999999999999997411 00 01123577776543333 33 68999999953
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
.+.+..+.....+|++++|+|+..+...+..++..++...++| +|+++||+|+.+..+ ..+...+
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~----~~~~~~~ 152 (409)
T CHL00071 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEE----LLELVEL 152 (409)
T ss_pred ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHH----HHHHHHH
Confidence 1455555666677889999999988887777778887778899 778999999975322 0111112
Q ss_pred HHHHHHHhhh--cCCCCEEEeecCCCCC
Q 021750 265 DFQELIQGFF--QTAPPWIMTSSVTNQG 290 (308)
Q Consensus 265 ~~~~~~~~~~--~~~~~~~~vSA~~g~g 290 (308)
++.+.+.... ....+++++||.+|+|
T Consensus 153 ~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 153 EVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 3444443321 1237899999999974
No 208
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.70 E-value=5.8e-16 Score=152.56 Aligned_cols=159 Identities=20% Similarity=0.252 Sum_probs=104.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc-------ceecc------CCCCceEEEE--EEEe---C---CCEEEecCCCc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK-------LALTS------KTPGKTQCIN--HFRI---N---DSWYLVDLPGY 181 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~-------~~~~~------~~~~~t~~~~--~~~~---~---~~~~liDtpG~ 181 (308)
..+.+|+++|..++|||||+.+|+.... ...+. ...|.|.... .+.+ + ..+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 3466999999999999999999986311 00111 1234444321 2222 2 25899999997
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchh
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEE 261 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~ 261 (308)
. .|...+..++..+ |++++|+|++.+...+......+....++|+++|+||+|+.... ...
T Consensus 85 ~----------dF~~~v~~sl~~a---D~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~------~~~ 145 (600)
T PRK05433 85 V----------DFSYEVSRSLAAC---EGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD------PER 145 (600)
T ss_pred H----------HHHHHHHHHHHHC---CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc------HHH
Confidence 5 3444555555544 55899999998877666544444555689999999999986432 122
Q ss_pred hHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 262 NLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++.+.++. ....++++||++|.|+++++++|.+.+.
T Consensus 146 v~~ei~~~lg~---~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 146 VKQEIEDVIGI---DASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHHHhCC---CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 23333333220 1135899999999999999999987653
No 209
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.69 E-value=5.2e-16 Score=124.33 Aligned_cols=147 Identities=20% Similarity=0.232 Sum_probs=91.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCc-ceeccCCCCceEEEEEEEe---CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 130 LVGRSNVGKSSLLNSLVRRKK-LALTSKTPGKTQCINHFRI---NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 130 lvG~~~vGKSSLin~l~~~~~-~~~~~~~~~~t~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
++|.+|+|||||++++++... ......+. .......+.. +..+.+||+||... +......++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~--- 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQER----------FRSLRRLYY--- 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHH----------HHhHHHHHh---
Confidence 589999999999999998753 11111111 2222222332 23689999999653 111222332
Q ss_pred CCccEEEEEEeCCCCCChhHHHH-----HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 206 STLVSVFLLIDASIPAKPIDLEY-----ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l-----~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
...+++++|+|.+.+........ .......++|+++|+||+|+..... ..... ...... .....++
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~------~~~~~-~~~~~~--~~~~~~~ 137 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV------VSEEE-LAEQLA--KELGVPY 137 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc------hHHHH-HHHHHH--hhcCCcE
Confidence 34456999999998765544321 2233457899999999999876432 11110 011111 1124899
Q ss_pred EEeecCCCCCHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMA 299 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~ 299 (308)
+++|+.++.|+++++++|.
T Consensus 138 ~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 138 FETSAKTGENVEELFEELA 156 (157)
T ss_pred EEEecCCCCChHHHHHHHh
Confidence 9999999999999999975
No 210
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.69 E-value=1.4e-16 Score=125.31 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=112.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
..+.++|..++|||||+|.+..+++.....++. ...+..+.-+. .+.+||.||.. +|+.+|..|++.
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptv--Gfnmrk~tkgnvtiklwD~gGq~----------rfrsmWerycR~ 88 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTV--GFNMRKVTKGNVTIKLWDLGGQP----------RFRSMWERYCRG 88 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhcccc--cceeEEeccCceEEEEEecCCCc----------cHHHHHHHHhhc
Confidence 479999999999999999998866533333333 33333333333 68899999964 678899888876
Q ss_pred cCCccEEEEEEeCCCCCCh--hHHHHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hhhcCC
Q 021750 205 RSTLVSVFLLIDASIPAKP--IDLEYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GFFQTA 277 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~--~~~~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 277 (308)
.+. ++|++|++++... ...++..++.. .++|+++++||.|+.+.-. -..+.+.++ ......
T Consensus 89 v~a---ivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~---------~~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 89 VSA---IVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS---------KIALIERMGLSSITDRE 156 (186)
T ss_pred CcE---EEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc---------HHHHHHHhCccccccce
Confidence 654 8999999986543 33455555543 6899999999999987543 223333332 222344
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+.+|.+||++..|++-+.+||.+.-+..+
T Consensus 157 vcC~siScke~~Nid~~~~Wli~hsk~~~ 185 (186)
T KOG0075|consen 157 VCCFSISCKEKVNIDITLDWLIEHSKSLR 185 (186)
T ss_pred EEEEEEEEcCCccHHHHHHHHHHHhhhhc
Confidence 78999999999999999999999876543
No 211
>PRK12735 elongation factor Tu; Reviewed
Probab=99.69 E-value=6.8e-16 Score=145.65 Aligned_cols=161 Identities=18% Similarity=0.246 Sum_probs=108.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC------Ccce--------eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR------KKLA--------LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~------~~~~--------~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~~ 186 (308)
...+|+++|.+++|||||+++|++. .... ......|+|.+.....+ ++ ++.++||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 3458999999999999999999962 1100 01124567766544444 33 68999999963
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEE-EEeecCCCCCcccCCCCCchhhH-H
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT-LVFTKCDKRKKKKNGGKRPEENL-N 264 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvi-vV~NK~Dl~~~~~~~~~~~~~~~-~ 264 (308)
.+..........+|++++|+|+..+...+..++..++...++|.+ +++||+|+.+..+ ..+.+ +
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~-----~~~~~~~ 152 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE-----LLELVEM 152 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHH-----HHHHHHH
Confidence 255666666777889999999998776666666777777788966 5799999974221 11112 2
Q ss_pred HHHHHHHhhhc--CCCCEEEeecCCCC----------CHHHHHHHHHHHH
Q 021750 265 DFQELIQGFFQ--TAPPWIMTSSVTNQ----------GRDEILLHMAQLR 302 (308)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~vSA~~g~----------gi~el~~~i~~~~ 302 (308)
++.+.+..... ...+++++||++|. ++.+|++.|.+.+
T Consensus 153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 33333432211 23789999999984 6778888877653
No 212
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.67 E-value=2.7e-15 Score=131.96 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=77.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc----ee------cc------CCCCceEE--EEEEEeCC-CEEEecCCCcccCCCc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL----AL------TS------KTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~----~~------~~------~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~ 187 (308)
+|+++|.+|+|||||+++|+..... .. .. ...+.+.. ...+.+++ ++.+|||||+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~----- 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHM----- 75 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCcc-----
Confidence 4899999999999999999874210 00 00 11122332 23344444 79999999975
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+|...+..++... |++++|+|++.+.......+..++...++|+++++||+|+..
T Consensus 76 -----~f~~~~~~~l~~a---D~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 76 -----DFIAEVERSLSVL---DGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred -----chHHHHHHHHHHh---CeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 2333444555544 458999999988776666667777778999999999999875
No 213
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.67 E-value=3.4e-17 Score=126.71 Aligned_cols=152 Identities=23% Similarity=0.305 Sum_probs=113.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCccee-ccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 129 ALVGRSNVGKSSLLNSLVRRKKLAL-TSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 129 ~lvG~~~vGKSSLin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
.++|.+++|||+|+-++-.+.+.+. .-.+.|.......+..++ ++.+|||.| ++ +|++....||+.
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtag-------qe---rfrsvt~ayyrd 70 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG-------QE---RFRSVTHAYYRD 70 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccc-------hH---HHhhhhHhhhcc
Confidence 3789999999999888766543221 111234444344455554 688999999 44 788899899987
Q ss_pred cCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 205 RSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
++. +++++|..+..++.+. ..|+. ...+.+++++||||+..++. +..++.+.+.+.++ .
T Consensus 71 a~a---llllydiankasfdn~--~~wlsei~ey~k~~v~l~llgnk~d~a~er~----v~~ddg~kla~~y~------i 135 (192)
T KOG0083|consen 71 ADA---LLLLYDIANKASFDNC--QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----VKRDDGEKLAEAYG------I 135 (192)
T ss_pred cce---eeeeeecccchhHHHH--HHHHHHHHHHHHhhHhHhhhccccccchhhc----cccchHHHHHHHHC------C
Confidence 765 8999999988887764 23332 24677899999999977554 46777888888876 8
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
|++++||++|.|++-.|-.|.+.+.+.
T Consensus 136 pfmetsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 136 PFMETSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred CceeccccccccHhHHHHHHHHHHHHh
Confidence 999999999999999999999887664
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.67 E-value=3.7e-15 Score=146.44 Aligned_cols=164 Identities=21% Similarity=0.305 Sum_probs=100.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-ceEEEEE--EEe-----------C--------CCEEEecCCCc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-KTQCINH--FRI-----------N--------DSWYLVDLPGY 181 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-~t~~~~~--~~~-----------~--------~~~~liDtpG~ 181 (308)
..|.|+++|.+|+|||||+++|.+... ....+| .|..... ... . ..+.+|||||+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v---~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAV---AAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc---ccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 345899999999999999999987531 222221 2221110 000 0 13789999996
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCC----
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGK---- 257 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~---- 257 (308)
. .|..++..+ ...+|++++|+|++++...+..+...++...++|+++++||+|+.........
T Consensus 82 e----------~f~~~~~~~---~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~ 148 (586)
T PRK04004 82 E----------AFTNLRKRG---GALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFL 148 (586)
T ss_pred H----------HHHHHHHHh---HhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHH
Confidence 4 333344333 34456799999999876666655566666678999999999998631100000
Q ss_pred --------Cchh----hHHHHHHHHHh------------hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 258 --------RPEE----NLNDFQELIQG------------FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 258 --------~~~~----~~~~~~~~~~~------------~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
...+ .+.++...+.. .+....+++++||++|+|++++++.+.....
T Consensus 149 e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 149 ESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence 0000 11111112211 1123478999999999999999998875443
No 215
>PLN03127 Elongation factor Tu; Provisional
Probab=99.67 E-value=2.8e-15 Score=143.05 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=108.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC------Cc-ce-------eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRR------KK-LA-------LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAA 185 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~------~~-~~-------~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~ 185 (308)
....+|+++|..++|||||+++|.+. .. .. ......|+|.+.....+ ++ ++.++||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 34468999999999999999999732 10 00 01223677877655444 23 789999999742
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCE-EEEeecCCCCCcccCCCCCchhhHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPM-TLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pv-ivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
++.........+|++++|+|+..+...++.++..++...++|. |+++||+|+.+..+ ..+.++
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~-----~~~~i~ 200 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE-----LLELVE 200 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH-----HHHHHH
Confidence 4444444555678899999999888777778888888888994 78899999975321 112222
Q ss_pred -HHHHHHHhh-h-cCCCCEEEeecC---CCCC-------HHHHHHHHHHHH
Q 021750 265 -DFQELIQGF-F-QTAPPWIMTSSV---TNQG-------RDEILLHMAQLR 302 (308)
Q Consensus 265 -~~~~~~~~~-~-~~~~~~~~vSA~---~g~g-------i~el~~~i~~~~ 302 (308)
++.+.+... + ....+++++||. +|.| +.+|++++.+.+
T Consensus 201 ~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 201 MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 333333221 1 124789999886 4555 677888877654
No 216
>PRK00049 elongation factor Tu; Reviewed
Probab=99.67 E-value=2.4e-15 Score=141.83 Aligned_cols=161 Identities=19% Similarity=0.255 Sum_probs=109.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-------c--e-----eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-------L--A-----LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-------~--~-----~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~~ 186 (308)
...+|+++|..++|||||+++|++... . . ......|+|.+.....+ ++ ++.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 345899999999999999999997310 0 0 01124577776654444 23 69999999963
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEE-EEeecCCCCCcccCCCCCchhhHHH
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT-LVFTKCDKRKKKKNGGKRPEENLND 265 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvi-vV~NK~Dl~~~~~~~~~~~~~~~~~ 265 (308)
++..........+|++++|+|+..+...+..++..++...++|++ +++||+|+.+..+ ..+...++
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~----~~~~~~~~ 153 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE----LLELVEME 153 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHH----HHHHHHHH
Confidence 255555566677889999999998877777777888887889976 5899999975221 01111123
Q ss_pred HHHHHHhh-h-cCCCCEEEeecCCCC----------CHHHHHHHHHHH
Q 021750 266 FQELIQGF-F-QTAPPWIMTSSVTNQ----------GRDEILLHMAQL 301 (308)
Q Consensus 266 ~~~~~~~~-~-~~~~~~~~vSA~~g~----------gi~el~~~i~~~ 301 (308)
+.+.+... + ....+++++||++|. ++..+++.|.+.
T Consensus 154 i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 154 VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 33333321 1 134799999999875 466777777654
No 217
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.66 E-value=1.4e-15 Score=143.60 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=101.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC------Ccc---e-----eccCCCCceEEEEEEEeC--C-CEEEecCCCcccCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRR------KKL---A-----LTSKTPGKTQCINHFRIN--D-SWYLVDLPGYGYAA 185 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~------~~~---~-----~~~~~~~~t~~~~~~~~~--~-~~~liDtpG~~~~~ 185 (308)
....+|+++|..++|||||+++|++. ... . ......|+|.+.....+. + ++.+|||||+.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~--- 86 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH---
Confidence 34468999999999999999999842 100 0 011235777766555442 2 69999999963
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEE-EEeecCCCCCcccCCCCCchhhHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT-LVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvi-vV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
++...++.....+|++++|+|+..+...+..+...++...++|.+ +|+||+|+.+..+ ..+...+
T Consensus 87 ----------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~----~~~~~~~ 152 (394)
T TIGR00485 87 ----------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE----LLELVEM 152 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHH----HHHHHHH
Confidence 255666777777888999999998777777677777777788866 6899999975321 0111112
Q ss_pred HHHHHHHhhhc--CCCCEEEeecCCCC
Q 021750 265 DFQELIQGFFQ--TAPPWIMTSSVTNQ 289 (308)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~vSA~~g~ 289 (308)
++.+.+..... ..++++++||++|.
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 153 EVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHhcCCCccCccEEECcccccc
Confidence 34444433211 22789999999885
No 218
>PRK10218 GTP-binding protein; Provisional
Probab=99.66 E-value=3.5e-15 Score=146.57 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCC--ccee------------ccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRK--KLAL------------TSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~--~~~~------------~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~ 186 (308)
.+.+|+++|..++|||||+++|+... +... .....|.|.... .+.+++ .+.+|||||..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~---- 79 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHA---- 79 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcc----
Confidence 45699999999999999999999731 1110 012345555433 333444 79999999965
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
.|...+..++.. +|++++|+|+..+...+......++...++|.++|+||+|+.... ..+.++++
T Consensus 80 ------df~~~v~~~l~~---aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~------~~~vl~ei 144 (607)
T PRK10218 80 ------DFGGEVERVMSM---VDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGAR------PDWVVDQV 144 (607)
T ss_pred ------hhHHHHHHHHHh---CCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCc------hhHHHHHH
Confidence 333345555544 455899999998776666666666667889999999999987543 33445555
Q ss_pred HHHHHhh----hcCCCCEEEeecCCCC----------CHHHHHHHHHHHH
Q 021750 267 QELIQGF----FQTAPPWIMTSSVTNQ----------GRDEILLHMAQLR 302 (308)
Q Consensus 267 ~~~~~~~----~~~~~~~~~vSA~~g~----------gi~el~~~i~~~~ 302 (308)
.+.+... ....+|++++||++|. |+..+++.|.+.+
T Consensus 145 ~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 145 FDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred HHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 5554321 0124789999999998 5788888777654
No 219
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.66 E-value=2.6e-15 Score=147.58 Aligned_cols=158 Identities=20% Similarity=0.245 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--cce--ec----------cCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK--KLA--LT----------SKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~--~~~--~~----------~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~ 188 (308)
.+|+++|..++|||||+++|+... +.. .+ ....|.|... ..+.+++ ++.+|||||+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~------ 75 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA------ 75 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH------
Confidence 489999999999999999998631 100 00 1123455543 3445555 79999999964
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
.|...+..++. .+|++++|+|+..+...+...+..++...++|+++|+||+|+...+ ..+..+++.+
T Consensus 76 ----DF~~ev~~~l~---~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~------~~~v~~ei~~ 142 (594)
T TIGR01394 76 ----DFGGEVERVLG---MVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR------PDEVVDEVFD 142 (594)
T ss_pred ----HHHHHHHHHHH---hCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC------HHHHHHHHHH
Confidence 23333344444 4466999999998776666666777777889999999999987532 2233444444
Q ss_pred HHHhhh----cCCCCEEEeecCCCC----------CHHHHHHHHHHHH
Q 021750 269 LIQGFF----QTAPPWIMTSSVTNQ----------GRDEILLHMAQLR 302 (308)
Q Consensus 269 ~~~~~~----~~~~~~~~vSA~~g~----------gi~el~~~i~~~~ 302 (308)
.+.... ...+|++++||++|. |++.+|+.|.+.+
T Consensus 143 l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 143 LFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred HHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 443211 113689999999996 7999999888764
No 220
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.66 E-value=9.4e-17 Score=130.30 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=120.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+|++++|..+|||||+|.++|.+-|...+..+.|+......+.+.. +..+|||+|. + +|..+.+.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq-------e---EfDaItkA 88 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ-------E---EFDAITKA 88 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccc-------h---hHHHHHHH
Confidence 346999999999999999999998765444555666554433333332 5778999884 3 67779999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
||+.+.. .++|+..++..++... ..|.. -..+|.++|-||+|+.+... .....++.+.+.+.
T Consensus 89 yyrgaqa---~vLVFSTTDr~SFea~--~~w~~kv~~e~~~IPtV~vqNKIDlveds~----~~~~evE~lak~l~---- 155 (246)
T KOG4252|consen 89 YYRGAQA---SVLVFSTTDRYSFEAT--LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----MDKGEVEGLAKKLH---- 155 (246)
T ss_pred Hhccccc---eEEEEecccHHHHHHH--HHHHHHHHHHhccCCeEEeeccchhhHhhh----cchHHHHHHHHHhh----
Confidence 9998887 6888888877666543 44443 26899999999999997654 35566777777776
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..++.+|++...|+..+|.++.+.+.+..
T Consensus 156 --~RlyRtSvked~NV~~vF~YLaeK~~q~~ 184 (246)
T KOG4252|consen 156 --KRLYRTSVKEDFNVMHVFAYLAEKLTQQK 184 (246)
T ss_pred --hhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 67899999999999999999998776654
No 221
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.7e-15 Score=118.30 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=117.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..+|+.+|..++||||++..|.-++ ..+..|.+.+.+..+.+.+ .+.+||..|.. +++.+|++||.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~---~~~~ipTvGFnvetVtykN~kfNvwdvGGqd----------~iRplWrhYy~ 83 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ---SVTTIPTVGFNVETVTYKNVKFNVWDVGGQD----------KIRPLWRHYYT 83 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC---CcccccccceeEEEEEeeeeEEeeeeccCch----------hhhHHHHhhcc
Confidence 4589999999999999999998874 3455666677777777766 89999999953 67789999998
Q ss_pred hcCCccEEEEEEeCCCCCChh--HHHHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPI--DLEYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~--~~~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
...+ ++||+|+.+..... ..++...+.. ...+++|..||-|+++... ..+++.+.+.-. .-+...
T Consensus 84 gtqg---lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~------pqei~d~leLe~-~r~~~W 153 (180)
T KOG0071|consen 84 GTQG---LIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK------PQEIQDKLELER-IRDRNW 153 (180)
T ss_pred CCce---EEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC------HHHHHHHhcccc-ccCCcc
Confidence 7776 89999998764332 3355555553 5789999999999998764 222333322221 222346
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+.+++|.+|+|+.|-+.|+.+..+
T Consensus 154 ~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 154 YVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred EeeccccccchhHHHHHHHHHhhcc
Confidence 7889999999999999999987654
No 222
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.65 E-value=1.9e-15 Score=144.14 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc-ce----------------------e------ccCCCCceEEEEEEEe--CC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK-LA----------------------L------TSKTPGKTQCINHFRI--ND 171 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~-~~----------------------~------~~~~~~~t~~~~~~~~--~~ 171 (308)
....+|+++|..++|||||+++|+.... +. . .....|.|.+.....+ ++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 4456899999999999999999986210 00 0 0113366666543333 33
Q ss_pred -CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC---ChhHHHHHHHhccCC-CCEEEEeecC
Q 021750 172 -SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA---KPIDLEYASWLGQNQ-IPMTLVFTKC 246 (308)
Q Consensus 172 -~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~---~~~~~~l~~~~~~~~-~pvivV~NK~ 246 (308)
.+.+|||||.. + +++.++.....+|++++|+|++.+. .....+...+....+ .|+++|+||+
T Consensus 85 ~~i~iiDtpGh~----------~---f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHR----------D---FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHH----------H---HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 79999999953 1 4555555556678899999999873 222222222333333 5789999999
Q ss_pred CCCCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHH
Q 021750 247 DKRKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~e 293 (308)
|+.+..+.. ..+..+++.+.+.... ....+++++||++|+|+++
T Consensus 152 Dl~~~~~~~---~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 152 DSVNYDEEE---FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hccCccHHH---HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 997422100 1111223333332211 1236899999999999986
No 223
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.6e-15 Score=130.71 Aligned_cols=177 Identities=20% Similarity=0.224 Sum_probs=116.1
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCc----eEEEEEEEeCCCEEEecCCCcccCCCchhhhhch
Q 021750 119 DCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGK----TQCINHFRINDSWYLVDLPGYGYAAAPRELRTDW 194 (308)
Q Consensus 119 ~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~----t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 194 (308)
+..+....+|.++|.+|+|||||||+|+..+. ..++..+-+ ++....+. ...+++|||||++++..... ++
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~-~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~---~~ 107 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEV-KEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDA---EH 107 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccC-ceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhH---HH
Confidence 33455556888999999999999999997543 233333322 22222222 24799999999987543332 34
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHh-c-cCCCCEEEEeecCCCCCccc----C---CCCCchhhHHH
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWL-G-QNQIPMTLVFTKCDKRKKKK----N---GGKRPEENLND 265 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~-~-~~~~pvivV~NK~Dl~~~~~----~---~~~~~~~~~~~ 265 (308)
+...++++... |++++++|+.++.-..+..+.+.+ . ..++++++++|.+|...... . ......+.+++
T Consensus 108 r~~~~d~l~~~---DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 108 RQLYRDYLPKL---DLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred HHHHHHHhhhc---cEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 44555555444 468999999887554444333332 2 24599999999999876521 0 01112344455
Q ss_pred HHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 266 FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 266 ~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
-.+.+.+++....|++.+|.+.++|++++..++.+.+-
T Consensus 185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 55556666666789999999999999999999988653
No 224
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.64 E-value=2.6e-15 Score=142.05 Aligned_cols=152 Identities=19% Similarity=0.185 Sum_probs=94.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-ee------------------------c------cCCCCceEEEE--EEEeCC-
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-AL------------------------T------SKTPGKTQCIN--HFRIND- 171 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-~~------------------------~------~~~~~~t~~~~--~~~~~~- 171 (308)
.+|+++|..++|||||+++|+..... .. + ....|.|.+.. .+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 37999999999999999999753210 00 0 00123444432 333333
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-CEEEEeecCCCCC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-PMTLVFTKCDKRK 250 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~-pvivV~NK~Dl~~ 250 (308)
++.++||||+. + +.+........+|++++|+|+..+...+..+...++...+. ++++|+||+|+..
T Consensus 81 ~~~liDtPGh~----------~---f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHE----------Q---YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHH----------H---HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 79999999953 2 44444455567788999999998876665554555544344 5889999999975
Q ss_pred cccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHH
Q 021750 251 KKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~e 293 (308)
.... ...+..+++.+.+........+++++||++|+|+++
T Consensus 148 ~~~~---~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 148 YDEE---VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred chHH---HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 3210 011112222222222111246899999999999986
No 225
>PLN03126 Elongation factor Tu; Provisional
Probab=99.64 E-value=6.1e-15 Score=141.51 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=102.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCc------ce--------eccCCCCceEEEEE--EEeCC-CEEEecCCCcccC
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKK------LA--------LTSKTPGKTQCINH--FRIND-SWYLVDLPGYGYA 184 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~------~~--------~~~~~~~~t~~~~~--~~~~~-~~~liDtpG~~~~ 184 (308)
+....+|+++|.+++|||||+++|++... .. ......|.|.+... +..++ ++.++||||+..
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~- 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD- 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-
Confidence 34456899999999999999999996210 00 01223456655433 33333 799999999632
Q ss_pred CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhH
Q 021750 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENL 263 (308)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~ 263 (308)
+.+..+.....+|++++|+|+..+...+..+....+...++| +++++||+|+.+..+ ..+...
T Consensus 157 ------------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~----~~~~i~ 220 (478)
T PLN03126 157 ------------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEE----LLELVE 220 (478)
T ss_pred ------------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHH----HHHHHH
Confidence 555556666677889999999988877777777777778898 778999999975321 011112
Q ss_pred HHHHHHHHhh-hc-CCCCEEEeecCCCCC
Q 021750 264 NDFQELIQGF-FQ-TAPPWIMTSSVTNQG 290 (308)
Q Consensus 264 ~~~~~~~~~~-~~-~~~~~~~vSA~~g~g 290 (308)
+++.+.+... +. ...+++++||.+|.+
T Consensus 221 ~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 221 LEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 2444444332 11 357899999998853
No 226
>PRK09866 hypothetical protein; Provisional
Probab=99.63 E-value=1.6e-14 Score=139.33 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC--CCEEEEeecCCC
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ--IPMTLVFTKCDK 248 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~--~pvivV~NK~Dl 248 (308)
.+++++||||+...... .+...+... ...+|+|+||+|+.......+..+.+.+...+ .|+++|+||+|+
T Consensus 230 ~QIIFVDTPGIhk~~~~-----~L~k~M~eq---L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP-----HLQKMLNQQ---LARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccch-----HHHHHHHHH---HhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 47899999999743211 122233333 33456799999999877777777777777666 499999999998
Q ss_pred CCcccCCCCCchhhHHHHHH-HHHhhhcCCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 249 RKKKKNGGKRPEENLNDFQE-LIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.+..+. ..+.+..+.+ .+.........+|++||+.|.|++++++.|.+
T Consensus 302 ~dreed----dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 302 QDRNSD----DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCcccc----hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 642210 1223333322 22222223467999999999999999999876
No 227
>PLN00023 GTP-binding protein; Provisional
Probab=99.63 E-value=4e-15 Score=134.46 Aligned_cols=136 Identities=22% Similarity=0.297 Sum_probs=91.9
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----------------CEEEecCCCccc
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----------------SWYLVDLPGYGY 183 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~liDtpG~~~ 183 (308)
.+..+..||+++|..|||||||+++|++..+.....++.|.+.....+.++. .+.+|||+|..
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE- 94 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE- 94 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh-
Confidence 3445567999999999999999999999876555555666655444444421 38899999943
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc---c---------------CCCCEEEEeec
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG---Q---------------NQIPMTLVFTK 245 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~---~---------------~~~pvivV~NK 245 (308)
+++.++..||..++ ++++|+|.++..++.+. ..|+. . .++|++||+||
T Consensus 95 ---------rfrsL~~~yyr~Ad---giILVyDITdr~SFenL--~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 95 ---------RYKDCRSLFYSQIN---GVIFVHDLSQRRTKTSL--QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ---------hhhhhhHHhccCCC---EEEEEEeCCCHHHHHHH--HHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 56667878877654 48999999987665543 23322 1 14799999999
Q ss_pred CCCCCccc--CCCCCchhhHHHHHHHH
Q 021750 246 CDKRKKKK--NGGKRPEENLNDFQELI 270 (308)
Q Consensus 246 ~Dl~~~~~--~~~~~~~~~~~~~~~~~ 270 (308)
+||...+. ....+..+..+++++..
T Consensus 161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~ 187 (334)
T PLN00023 161 ADIAPKEGTRGSSGNLVDAARQWVEKQ 187 (334)
T ss_pred ccccccccccccccccHHHHHHHHHHc
Confidence 99975431 10012345566666554
No 228
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.63 E-value=2.3e-15 Score=149.99 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceec----------cCCC----------------------CceEEEE--EEEe
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALT----------SKTP----------------------GKTQCIN--HFRI 169 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~----------~~~~----------------------~~t~~~~--~~~~ 169 (308)
...+|+++|.+|+|||||+++|+.... .+. +... |.|.+.. .+..
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK-MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 345899999999999999999997432 111 1112 3343332 2333
Q ss_pred CC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCC
Q 021750 170 ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCD 247 (308)
Q Consensus 170 ~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~D 247 (308)
++ ++.++||||+. + +..........+|++++|+|+..+...+..+...++...+ +++++|+||+|
T Consensus 102 ~~~~~~liDtPG~~----------~---f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHE----------Q---YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChH----------H---HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence 33 79999999953 1 3334444556778899999998876655544444554444 57889999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~e 293 (308)
+.+..+. ...+..+++.+.+........+++++||++|.|+++
T Consensus 169 ~~~~~~~---~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQE---VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhH---HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9752210 011112222222222211236799999999999974
No 229
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.63 E-value=1.5e-14 Score=124.47 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=94.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe-----CCCEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI-----NDSWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
++|+++|++|||||||+++|...++....+ .++.....+.. +..+.+|||||.. +++..+..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~---s~~~~~~~~~~~~~~~~~~~~l~D~pG~~----------~~~~~~~~ 67 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVT---SIEPNVATFILNSEGKGKKFRLVDVPGHP----------KLRDKLLE 67 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccC---cEeecceEEEeecCCCCceEEEEECCCCH----------HHHHHHHH
Confidence 479999999999999999999875432211 11222222222 2369999999964 34445556
Q ss_pred HHHhcCCccEEEEEEeCCCCC-ChhHH--HHHHHhc-----cCCCCEEEEeecCCCCCcccCCC--CCchhhHHHHHHHH
Q 021750 201 YFLNRSTLVSVFLLIDASIPA-KPIDL--EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGG--KRPEENLNDFQELI 270 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~-~~~~~--~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~ 270 (308)
++... +++++||+|++... ...+. .+..++. ..++|+++|+||+|+........ ...+.++..+....
T Consensus 68 ~~~~~--~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r 145 (203)
T cd04105 68 TLKNS--AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESR 145 (203)
T ss_pred HHhcc--CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 66554 35699999998763 22221 1111211 25899999999999876432100 00111122121111
Q ss_pred Hhh-----------------------h---cCCCCEEEeecCCCC-CHHHHHHHHHH
Q 021750 271 QGF-----------------------F---QTAPPWIMTSSVTNQ-GRDEILLHMAQ 300 (308)
Q Consensus 271 ~~~-----------------------~---~~~~~~~~vSA~~g~-gi~el~~~i~~ 300 (308)
... | ...+.++++|++.+. |++++.+||.+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 146 SKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred hccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 110 0 112577889998776 69999999865
No 230
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.62 E-value=2.8e-14 Score=123.64 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=102.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC---CCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN---DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++|.+..+.....++.+........... -++.+|||+|.. +++.++..|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~----------~~~~~~~~y~ 75 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE----------EYRSLRPEYY 75 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHH----------HHHHHHHHHh
Confidence 699999999999999999999986543233332222211122111 148899999954 5667888888
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCc-----hhhHHHHHHHHHh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRP-----EENLNDFQELIQG 272 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~ 272 (308)
....+ +++++|........+. .+...+.. ...|+++|+||+|+........... .............
T Consensus 76 ~~~~~---~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (219)
T COG1100 76 RGANG---ILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL 152 (219)
T ss_pred cCCCE---EEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhh
Confidence 87776 7888888864433332 22222221 3699999999999987643110000 0001111111111
Q ss_pred hhcCCCCEEEeecC--CCCCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSV--TNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~--~g~gi~el~~~i~~~~~~ 304 (308)
.......++++|++ ++.++++++..+.+.+..
T Consensus 153 ~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 153 PEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred hhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 10112349999999 999999999998887753
No 231
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.62 E-value=4.3e-15 Score=142.92 Aligned_cols=152 Identities=19% Similarity=0.178 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-ee------------cc------------------CCCCceEEEE--EEEe
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-AL------------TS------------------KTPGKTQCIN--HFRI 169 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-~~------------~~------------------~~~~~t~~~~--~~~~ 169 (308)
....+|+++|.+++|||||+++|+..... .. .. ...|.|.+.. .+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 44579999999999999999999864310 00 00 0123444432 2333
Q ss_pred CC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCC
Q 021750 170 ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCD 247 (308)
Q Consensus 170 ~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~D 247 (308)
++ ++.++||||+. . +.+........+|++++|+|+..+...+..+...++...+ +|+++|+||+|
T Consensus 105 ~~~~i~~iDTPGh~----------~---f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGHE----------Q---YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCcH----------H---HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeec
Confidence 33 79999999952 2 3334444456778899999998876554433333333333 57899999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHh---hh--cCCCCEEEeecCCCCCHHHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQG---FF--QTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~vSA~~g~gi~el 294 (308)
+.... .+.++++.+.+.. .+ ....+++++||++|+|++++
T Consensus 172 ~~~~~-------~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 172 LVDYS-------EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cccch-------hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 97432 1223333333322 11 12478999999999999864
No 232
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.61 E-value=7.5e-15 Score=140.03 Aligned_cols=162 Identities=17% Similarity=0.242 Sum_probs=105.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCccee-ccCCCCceEEEE------------------------------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLAL-TSKTPGKTQCIN------------------------------------ 165 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~-~~~~~~~t~~~~------------------------------------ 165 (308)
.....|+++|.-..|||||+.+|++-.-... .....|.|.+..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4456899999999999999999997421000 000111111100
Q ss_pred EEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhccCCC-CEEEEe
Q 021750 166 HFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLGQNQI-PMTLVF 243 (308)
Q Consensus 166 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~-~~~~~~~l~~~~~~~~~-pvivV~ 243 (308)
.......+.++||||+. .+.+..+.....+|++++|+|+..+ ...+..+....+...++ ++|+|+
T Consensus 112 ~~~~~~~i~~IDtPGH~-------------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-------------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred cccccceEeeeeCCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 00112368999999953 2666666777788899999999975 34333333444443444 589999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
||+|+.+... ..+..+++.+.+...+....+++++||++|+|+++|+++|.+.+
T Consensus 179 NKiDlv~~~~-----~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 179 NKIDLVKEAQ-----AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred ecccccCHHH-----HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 9999985322 23334455554444334568999999999999999999998644
No 233
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.61 E-value=8.8e-15 Score=131.00 Aligned_cols=140 Identities=13% Similarity=0.136 Sum_probs=91.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC----cceecc------------CCCCceEEE--EEEEeCC-CEEEecCCCcccCCCc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK----KLALTS------------KTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~----~~~~~~------------~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~ 187 (308)
+|+++|.+|+|||||+++|+... ....+. ...|+|... ..+.+++ ++.++||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 58999999999999999997421 111111 123555542 3445555 799999999642
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
|...+..++ ..+|++++|+|+..+.......+...+...++|+++++||+|+.... ....++++.
T Consensus 77 ------f~~~~~~~l---~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~------~~~~~~~l~ 141 (270)
T cd01886 77 ------FTIEVERSL---RVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD------FFRVVEQIR 141 (270)
T ss_pred ------HHHHHHHHH---HHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC------HHHHHHHHH
Confidence 222333333 34456999999998887777777777777889999999999987532 223345555
Q ss_pred HHHHhhhcCCCCEEEeecCC
Q 021750 268 ELIQGFFQTAPPWIMTSSVT 287 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~ 287 (308)
+.++.. ....++++|+..
T Consensus 142 ~~l~~~--~~~~~~Pisa~~ 159 (270)
T cd01886 142 EKLGAN--PVPLQLPIGEED 159 (270)
T ss_pred HHhCCC--ceEEEeccccCC
Confidence 544321 224567777763
No 234
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=4.7e-14 Score=132.35 Aligned_cols=166 Identities=20% Similarity=0.256 Sum_probs=123.5
Q ss_pred CCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe----CCCEEEecCCCcccCCCchhhhh
Q 021750 117 TEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI----NDSWYLVDLPGYGYAAAPRELRT 192 (308)
Q Consensus 117 ~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpG~~~~~~~~~~~~ 192 (308)
.|....+..|-|-++|.-.-|||||+.+|-+... .....-|.|..+.-|.+ +.+++|+||||+.
T Consensus 145 ~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa---------- 212 (683)
T KOG1145|consen 145 DPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHA---------- 212 (683)
T ss_pred CHhhcCCCCCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcHH----------
Confidence 3444556778999999999999999999988642 24455677777665554 3389999999953
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH--H
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL--I 270 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~ 270 (308)
.|..|. -+.+...|++++|+.+.++...+..+-.......+.|++|.+||||.++.. ++...+++... .
T Consensus 213 AF~aMR---aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~------pekv~~eL~~~gi~ 283 (683)
T KOG1145|consen 213 AFSAMR---ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN------PEKVKRELLSQGIV 283 (683)
T ss_pred HHHHHH---hccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC------HHHHHHHHHHcCcc
Confidence 333332 267777899999999999999998888889999999999999999988643 23333333221 0
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
-+..+...+++++||++|+|++.|.+.+.-+.+
T Consensus 284 ~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 284 VEDLGGDVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HHHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence 112334589999999999999999998776544
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.61 E-value=2.7e-14 Score=128.35 Aligned_cols=126 Identities=19% Similarity=0.337 Sum_probs=79.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceecc-------CCCCc-eEEE--EEEEeCC---CEEEecCCCcccCCCchhhh
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTS-------KTPGK-TQCI--NHFRIND---SWYLVDLPGYGYAAAPRELR 191 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~-------~~~~~-t~~~--~~~~~~~---~~~liDtpG~~~~~~~~~~~ 191 (308)
.++|+++|.+|+|||||+|+|++........ ....+ .... ..+..++ ++.+|||||+++........
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 4699999999999999999999976432211 11222 1221 2233333 69999999997643322211
Q ss_pred --------hchHHHHHHHH---H----hcCCccEEEEEEeCCC-CCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 192 --------TDWDKFTKDYF---L----NRSTLVSVFLLIDASI-PAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 192 --------~~~~~~~~~~~---~----~~~~~~~vl~viD~~~-~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.++...+.+.. + .-..+++|+|+++.+. +....+.++++++.. .+|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 11111111111 0 1124578999999874 566777888888875 7999999999999753
No 236
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.61 E-value=9.3e-15 Score=126.58 Aligned_cols=153 Identities=15% Similarity=0.112 Sum_probs=89.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCccee-----------cc------CCCCceEEEE--EEEe----C--CCEEEecCCCc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLAL-----------TS------KTPGKTQCIN--HFRI----N--DSWYLVDLPGY 181 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~-----------~~------~~~~~t~~~~--~~~~----~--~~~~liDtpG~ 181 (308)
+|+++|.+|+|||||+++|+....... .. ...|.+.... .+.+ + ..+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 699999999999999999997432110 00 1122332211 1111 1 25889999996
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCC-CCCch
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNG-GKRPE 260 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~-~~~~~ 260 (308)
.+ +......++.. +|++++|+|+..+......++.......++|+++|+||+|+...+... .....
T Consensus 82 ~~----------f~~~~~~~~~~---aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~ 148 (213)
T cd04167 82 VN----------FMDEVAAALRL---SDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAY 148 (213)
T ss_pred cc----------hHHHHHHHHHh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHH
Confidence 52 32344444443 455999999998776655554455555679999999999986221100 00011
Q ss_pred hhHHHHHHHHHhhh------------cCCCCEEEeecCCCCCHH
Q 021750 261 ENLNDFQELIQGFF------------QTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 261 ~~~~~~~~~~~~~~------------~~~~~~~~vSA~~g~gi~ 292 (308)
+.+.+..+.++... +....+++.||+.+++++
T Consensus 149 ~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 149 FKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 22223333332221 112338899999998876
No 237
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=3.9e-14 Score=133.49 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=117.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--C----CCEEEecCCCcccCCCchhhhhchHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--N----DSWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~----~~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
..|-|.++|.-..|||||+..+-+... .....-|.|..+.-+.+ + ..++++||||+. . |
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe----------A---F 68 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE----------A---F 68 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH----------H---H
Confidence 346799999999999999999987642 23344567776644433 2 379999999953 2 3
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH--HHhhhc
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL--IQGFFQ 275 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 275 (308)
+...-+.+...|++++|+|+.++...+..+-...+...+.|++|++||+|+++.+ +.....++.+. ..+.++
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n------p~~v~~el~~~gl~~E~~g 142 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN------PDKVKQELQEYGLVPEEWG 142 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC------HHHHHHHHHHcCCCHhhcC
Confidence 3222266777889999999999999998888888889999999999999999543 22222222221 122334
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
....++++||++|+|+++|++.+.-+.+-
T Consensus 143 g~v~~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 143 GDVIFVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred CceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999988765543
No 238
>PRK00007 elongation factor G; Reviewed
Probab=99.59 E-value=2.6e-14 Score=143.73 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=85.8
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCC----cceecc------------CCCCceEEE--EEEEeCC-CEEEecCCCc
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRK----KLALTS------------KTPGKTQCI--NHFRIND-SWYLVDLPGY 181 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~----~~~~~~------------~~~~~t~~~--~~~~~~~-~~~liDtpG~ 181 (308)
....+.+|+|+|.+|+|||||+++|+... ....+. ...|+|.+. ..+.+++ ++.++||||+
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 34557799999999999999999997411 111111 234566543 3444545 8999999996
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
.+ +..+.......+|++++|+|+..+...++..+..++...++|+++++||+|+..
T Consensus 86 ~~-------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 86 VD-------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG 141 (693)
T ss_pred HH-------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 42 333344455566789999999999888888888888888999999999999874
No 239
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.59 E-value=8.1e-15 Score=131.39 Aligned_cols=112 Identities=19% Similarity=0.287 Sum_probs=74.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc----eeccC------------CCCceE--EEEEEEeCC-CEEEecCCCcccCCCc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL----ALTSK------------TPGKTQ--CINHFRIND-SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~----~~~~~------------~~~~t~--~~~~~~~~~-~~~liDtpG~~~~~~~ 187 (308)
+|+++|.+|+|||||+++|+..... ..+.. ..+.+. ....+.+++ ++.+|||||..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~----- 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYA----- 75 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHH-----
Confidence 5899999999999999999863210 00000 001111 223444454 78999999964
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.|...+..++. .+|++++|+|++.+.......+..++...++|+++++||+|+...
T Consensus 76 -----~f~~~~~~~l~---~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 76 -----DFVGETRAALR---AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHHHHHHHH---HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 22223334443 445699999999887766666666777788999999999998754
No 240
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=8.4e-15 Score=118.58 Aligned_cols=162 Identities=17% Similarity=0.203 Sum_probs=112.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc--ce---eccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKK--LA---LTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~--~~---~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
...|+|+|..|+|||||+.++-.... +. ...-.+.....+..+.+.. .+.+||..|. + ..+++|
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQ-------e---~lrSlw 86 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQ-------E---SLRSLW 86 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCCh-------H---HHHHHH
Confidence 34799999999999999998865321 00 0111222333445555555 7999999883 3 566799
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..||..+.+ ++|+||++++....+. .+.... ...+.|+++.+||-|+.+.. ...+++.........
T Consensus 87 ~~yY~~~H~---ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------~~~El~~~~~~~e~~ 157 (197)
T KOG0076|consen 87 KKYYWLAHG---IIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------EAAELDGVFGLAELI 157 (197)
T ss_pred HHHHHHhce---eEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------hHHHHHHHhhhhhhc
Confidence 999988776 8999999986654432 222222 23789999999999998754 233444444432222
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
-....++.+|||.+|+||++-.+|+...+...
T Consensus 158 ~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 158 PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 23458999999999999999999999887654
No 241
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=4e-14 Score=142.39 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=83.7
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCc----ceecc------------CCCCceEEE--EEEEeCC-CEEEecCCC
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKK----LALTS------------KTPGKTQCI--NHFRIND-SWYLVDLPG 180 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~----~~~~~------------~~~~~t~~~--~~~~~~~-~~~liDtpG 180 (308)
.....+.+|+|+|.+|+|||||+++|+.... ...+. ...|+|... ..+.+++ ++.+|||||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG 84 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPG 84 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCC
Confidence 3445677999999999999999999975321 00011 124555543 4455555 899999999
Q ss_pred cccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+.+ +...+..++.. +|++++|+|+..+.......+..++...++|+++|+||+|+...
T Consensus 85 ~~~----------~~~~~~~~l~~---~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVD----------FTVEVERSLRV---LDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred Ccc----------hhHHHHHHHHH---hCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 853 21223333333 45699999999888777777777777788999999999998753
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.58 E-value=2.9e-14 Score=136.23 Aligned_cols=152 Identities=17% Similarity=0.238 Sum_probs=99.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-c----------------------eecc------CCCCceEEEEEE--EeCC-
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-L----------------------ALTS------KTPGKTQCINHF--RIND- 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-~----------------------~~~~------~~~~~t~~~~~~--~~~~- 171 (308)
...+|+++|..++|||||+.+|+..-. + +... ...|.|.+...+ .+++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 345899999999999999999986210 0 0011 123556554333 3333
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-------ChhHHHHHHHhccCCCC-EEEEe
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-------KPIDLEYASWLGQNQIP-MTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-------~~~~~~l~~~~~~~~~p-vivV~ 243 (308)
.+.++||||+.+ |..........+|++++|+|+..+. ..+..+...++...++| +|+++
T Consensus 86 ~i~lIDtPGh~~-------------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v 152 (446)
T PTZ00141 86 YFTIIDAPGHRD-------------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCI 152 (446)
T ss_pred EEEEEECCChHH-------------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence 789999999542 5666666677888899999999765 23444556666667877 57899
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhhc------CCCCEEEeecCCCCCHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ------TAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vSA~~g~gi~e 293 (308)
||+|...... .++..+++.+.+...+. ...+++++||.+|+|+.+
T Consensus 153 NKmD~~~~~~-----~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 153 NKMDDKTVNY-----SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred Eccccccchh-----hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9999542110 12233333333333221 247899999999999964
No 243
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=113.24 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=110.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCccee------ccCCC--CceEE--EEEEEeCC--CEEEecCCCcccCCCchhhhh
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLAL------TSKTP--GKTQC--INHFRIND--SWYLVDLPGYGYAAAPRELRT 192 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~------~~~~~--~~t~~--~~~~~~~~--~~~liDtpG~~~~~~~~~~~~ 192 (308)
..||+++|..++||||++.+++....+.. .+... .+|.. .....+++ .+.++||||..
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~---------- 79 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE---------- 79 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH----------
Confidence 45999999999999999999998642111 01111 13332 33344444 79999999954
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ 271 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 271 (308)
+|.-+|..+.+. ++.+++++|.+.+......++..++.... +|++|.+||.|+.+.. +.+.+.++.+.-.
T Consensus 80 RF~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~------ppe~i~e~l~~~~ 150 (187)
T COG2229 80 RFKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL------PPEKIREALKLEL 150 (187)
T ss_pred HHHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC------CHHHHHHHHHhcc
Confidence 566666665555 44589999999998886677777777655 9999999999999765 3444444433321
Q ss_pred hhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 272 ~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...++++++|.++++..+.++.+...
T Consensus 151 ----~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 ----LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ----CCCceeeeecccchhHHHHHHHHHhh
Confidence 24899999999999999988877654
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.58 E-value=6.8e-14 Score=135.92 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=77.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCC-cc---eec----------cC------CCCceEE--EEEEEeCC-CEEEecCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRK-KL---ALT----------SK------TPGKTQC--INHFRIND-SWYLVDLPG 180 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~-~~---~~~----------~~------~~~~t~~--~~~~~~~~-~~~liDtpG 180 (308)
...+|+|+|.+|+|||||+++|+... .+ ..+ ++ ..|.+.. ...+.+++ .+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 45699999999999999999997421 00 000 10 1122222 23455555 799999999
Q ss_pred cccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+. .|......++. .+|++++|+|++.+.......+.......++|+++++||+|+..
T Consensus 89 ~~----------df~~~~~~~l~---~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HE----------DFSEDTYRTLT---AVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred ch----------hhHHHHHHHHH---HCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 64 22223334443 45669999999988766666666777778999999999999865
No 245
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.58 E-value=2.3e-14 Score=130.81 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=55.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEE---------------------eCC----CEEEecCCC
Q 021750 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFR---------------------IND----SWYLVDLPG 180 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~---------------------~~~----~~~liDtpG 180 (308)
|+++|.||||||||+|+|++.+. .+..+|++|.... ... .++ .+.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~--~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV--EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC--cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 58999999999999999999753 4566666654321 111 111 589999999
Q ss_pred cccCC-CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021750 181 YGYAA-APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 181 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~ 219 (308)
+..+. .+.+ +...|+.....+|++++|+|+..
T Consensus 79 lv~ga~~~~g-------lg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 79 LVPGAHEGKG-------LGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCCccchhh-------HHHHHHHHHHHCCEEEEEEeCCC
Confidence 97542 2222 33444444455667999999973
No 246
>PRK12739 elongation factor G; Reviewed
Probab=99.57 E-value=5.4e-14 Score=141.48 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCC----cceecc------------CCCCceEEE--EEEEeCC-CEEEecCCCcc
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRK----KLALTS------------KTPGKTQCI--NHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~----~~~~~~------------~~~~~t~~~--~~~~~~~-~~~liDtpG~~ 182 (308)
...+.+|+++|.+|+|||||+++|+... ....+. ...|+|... ..+.+++ ++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3456799999999999999999997521 111111 133555543 3455555 89999999964
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+ +..+.......+|++++|+|+..+...++..+..++...++|+++++||+|+...
T Consensus 85 ~-------------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 D-------------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred H-------------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2 2223334444556799999999988887778888888889999999999998853
No 247
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=2.4e-14 Score=133.04 Aligned_cols=168 Identities=17% Similarity=0.175 Sum_probs=109.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
.+....++|+|.||||||||+|.++..+ ..+.+++.||.. +.++.+.. +|.++||||+.+....+....++..++
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 3445689999999999999999999876 457778877775 45555554 799999999975332211111222222
Q ss_pred HHHHHhcCCccEEEEEEeCCCCC--ChhH-HHHHHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPA--KPID-LEYASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~--~~~~-~~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.+.....+ |+|++|.+... +..+ ..+.+-+. -.++|+|+|+||+|+..... ..+.-+++.+.+.+.
T Consensus 243 --ALAHLraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ed-----L~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 243 --ALAHLRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPED-----LDQKNQELLQTIIDD 313 (620)
T ss_pred --HHHHhhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccc-----cCHHHHHHHHHHHhc
Confidence 22233333 89999998543 2222 12222222 16899999999999987554 222233333433322
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++.+|+.+.+|+-++....++.+
T Consensus 314 --~~v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 314 --GNVKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred --cCceEEEecccchhceeeHHHHHHHHH
Confidence 127899999999999998887777654
No 248
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.56 E-value=1.1e-13 Score=120.97 Aligned_cols=142 Identities=21% Similarity=0.184 Sum_probs=92.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
..|+++|.+|+|||||++.|.+...........|+ .... ...+.++.++||||.. ...+...
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~-~~~~~~i~~vDtPg~~----------------~~~l~~a 101 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVV-TGKKRRLTFIECPNDI----------------NAMIDIA 101 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEE-ecCCceEEEEeCCchH----------------HHHHHHH
Confidence 47999999999999999999875221222233332 1111 1124489999999832 1112223
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEE-EEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEee
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT-LVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTS 284 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvi-vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS 284 (308)
..+|++++|+|++.+....+..+..++...++|.+ +|+||+|+.+..+ ...+..+++.+.+...+..+.+++++|
T Consensus 102 k~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~----~~~~~~~~l~~~~~~~~~~~~ki~~iS 177 (225)
T cd01882 102 KVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNK----TLRKTKKRLKHRFWTEVYQGAKLFYLS 177 (225)
T ss_pred HhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHH----HHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 45677999999998887777777888877788855 5999999874321 012233444443433333468999999
Q ss_pred cCCCC
Q 021750 285 SVTNQ 289 (308)
Q Consensus 285 A~~g~ 289 (308)
|++.-
T Consensus 178 a~~~~ 182 (225)
T cd01882 178 GIVHG 182 (225)
T ss_pred eccCC
Confidence 99873
No 249
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.56 E-value=1e-13 Score=123.97 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=75.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc----ceec----------cCC------CCceEE--EEEEEeCC-CEEEecCCCcc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKK----LALT----------SKT------PGKTQC--INHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~----~~~~----------~~~------~~~t~~--~~~~~~~~-~~~liDtpG~~ 182 (308)
.+|+++|.+|+|||||+++|+.... ...+ .+. .+.+.. ...+.+++ ++.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5899999999999999999986321 0000 010 122222 23445555 79999999964
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+|......++. .+|++++|+|++.+.......+..+....++|+++++||+|+...
T Consensus 83 ----------df~~~~~~~l~---~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 ----------DFSEDTYRTLT---AVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred ----------HHHHHHHHHHH---HCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 22222333444 345689999999876655555566666678999999999998654
No 250
>PTZ00099 rab6; Provisional
Probab=99.55 E-value=7.6e-14 Score=117.32 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=84.6
Q ss_pred ccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH--HH
Q 021750 154 TSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL--EY 228 (308)
Q Consensus 154 ~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~--~l 228 (308)
+.++.|.......+.+++ .+.+|||||.. ++..++..|++. ++++++|+|.++..++.+. .+
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e----------~~~~~~~~~~~~---ad~~ilv~D~t~~~sf~~~~~w~ 75 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE----------RFRSLIPSYIRD---SAAAIVVYDITNRQSFENTTKWI 75 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChH----------HhhhccHHHhCC---CcEEEEEEECCCHHHHHHHHHHH
Confidence 444555554444455544 68899999953 455566677654 4559999999987665543 11
Q ss_pred HHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 229 ASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 229 ~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..... ....|+++|+||+|+..... +..+....+.+.+ ...++++||++|+|++++|++|.+.+.+
T Consensus 76 ~~i~~~~~~~~piilVgNK~DL~~~~~----v~~~e~~~~~~~~------~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 76 QDILNERGKDVIIALVGNKTDLGDLRK----VTYEEGMQKAQEY------NTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred HHHHHhcCCCCeEEEEEECcccccccC----CCHHHHHHHHHHc------CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 12222 24688999999999975332 2333333333322 2578999999999999999999988754
No 251
>PRK13351 elongation factor G; Reviewed
Probab=99.55 E-value=1.4e-13 Score=138.60 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCc-c---e------eccC------CCCceEE--EEEEEeCC-CEEEecCCCcc
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKK-L---A------LTSK------TPGKTQC--INHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~-~---~------~~~~------~~~~t~~--~~~~~~~~-~~~liDtpG~~ 182 (308)
.....+|+++|..|+|||||+++|+.... . . ...+ ..+.|.. ...+.+++ .+.+|||||..
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 34567999999999999999999986321 0 0 0010 1222322 23444544 79999999974
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+|...+..++... |++++|+|++.+.......+...+...++|+++|+||+|+...
T Consensus 85 ----------df~~~~~~~l~~a---D~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 ----------DFTGEVERSLRVL---DGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred ----------HHHHHHHHHHHhC---CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 2333444555444 5589999999887776666666777778999999999998854
No 252
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.55 E-value=1.4e-13 Score=119.65 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=73.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc-e-------ec------cCCCCceEEE--EEEEeC----------C-CEEEecCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL-A-------LT------SKTPGKTQCI--NHFRIN----------D-SWYLVDLP 179 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~-~-------~~------~~~~~~t~~~--~~~~~~----------~-~~~liDtp 179 (308)
+|+++|..++|||||+.+|+..... . .. ....|.|... ..+.+. + .+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999864210 0 00 0011222221 111221 2 58899999
Q ss_pred CcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 180 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
|.. .|......++..+ |++++|+|+..+......++.+.....++|+++|+||+|+.
T Consensus 82 G~~----------~f~~~~~~~l~~a---D~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHV----------DFSSEVTAALRLC---DGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred Ccc----------ccHHHHHHHHHhc---CeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 975 2333444444444 45899999999887777666666666789999999999986
No 253
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.54 E-value=1.3e-14 Score=121.83 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=111.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..|+++||+.++|||+|+..+..+.+...+.++..-.+ ...+.++ + .+.+|||.|..+ +..+. .
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqed----------YDrlR-p 71 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQED----------YDRLR-P 71 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcc----------ccccc-c
Confidence 35899999999999999999988866544444433222 2334453 4 588999999542 22222 1
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHH
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQ 267 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~ 267 (308)
..-...|+++++++..++.+..+.. .+|+.+ .+.|+|+|++|.||.++.. ....+..++...++
T Consensus 72 --lsY~~tdvfl~cfsv~~p~S~~nv~-~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA 148 (198)
T KOG0393|consen 72 --LSYPQTDVFLLCFSVVSPESFENVK-SKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELA 148 (198)
T ss_pred --cCCCCCCEEEEEEEcCChhhHHHHH-hhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHH
Confidence 1333446678889998888877642 455543 6899999999999985321 12235667777787
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+.++ ...|++|||++..|++++|+......
T Consensus 149 ~~ig-----a~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 149 KEIG-----AVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHhC-----cceeeeehhhhhCCcHHHHHHHHHHH
Confidence 7776 37899999999999999999877654
No 254
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=6.3e-15 Score=115.64 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=110.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
...+|.++|-.|+||++++.++--.+ .++..|.....+..+.+.+ ++.+||..|.. .++..|+.||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvge---vvttkPtigfnve~v~yKNLk~~vwdLggqt----------SirPyWRcYy 83 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGE---VVTTKPTIGFNVETVPYKNLKFQVWDLGGQT----------SIRPYWRCYY 83 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCc---ccccCCCCCcCccccccccccceeeEccCcc----------cccHHHHHHh
Confidence 34589999999999999998886653 3445555555566666655 89999998843 4566999999
Q ss_pred HhcCCccEEEEEEeCCCCCC--hhHHHHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHH-HHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAK--PIDLEYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF-QELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~--~~~~~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 276 (308)
.+.+. ++||+|.++... ....++...+.+ .+..+++++||.|...... ..+....+ ...++ ..
T Consensus 84 ~dt~a---vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t-----~~E~~~~L~l~~Lk---~r 152 (182)
T KOG0072|consen 84 ADTDA---VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALT-----RSEVLKMLGLQKLK---DR 152 (182)
T ss_pred cccce---EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhh-----HHHHHHHhChHHHh---hh
Confidence 87765 899999987543 333345555543 5677889999999876432 11111111 11111 12
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+.+|..||.+|+|+++.++|+.+-+++.
T Consensus 153 ~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 153 IWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred eeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 37899999999999999999999988753
No 255
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.53 E-value=2.2e-13 Score=128.01 Aligned_cols=84 Identities=25% Similarity=0.265 Sum_probs=57.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EE---------------------eC----CCEEEecC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FR---------------------IN----DSWYLVDL 178 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~---------------------~~----~~~~liDt 178 (308)
++|+|+|.||||||||+|+|++.+. .+...|++|..... .. .+ -.+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~--~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV--EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc--cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 5899999999999999999998753 34566666654321 11 11 14789999
Q ss_pred CCcccCC-CchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 179 PGYGYAA-APRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 179 pG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
||+..+. .+.+ +...|+.....+|++++|+|+.
T Consensus 80 aGl~~ga~~g~g-------lg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRG-------LGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhh-------HHHHHHHHHHHCCEEEEEEeCC
Confidence 9997642 2233 3334444455567799999996
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=3.7e-13 Score=130.84 Aligned_cols=115 Identities=18% Similarity=0.280 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCC-cce---ec----------cC------CCCceEE--EEEEEeCC-CEEEecCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRK-KLA---LT----------SK------TPGKTQC--INHFRIND-SWYLVDLP 179 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~-~~~---~~----------~~------~~~~t~~--~~~~~~~~-~~~liDtp 179 (308)
....+|+|+|.+|+|||||+++|+... .+. .+ ++ ..|.+.. ...+.+++ ++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 345699999999999999999986421 110 01 00 1123332 23344544 79999999
Q ss_pred CcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 180 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
|+. .|......++ ..+|++++|+|++.+.......+...+...++|+++++||+|+..
T Consensus 89 G~~----------df~~~~~~~l---~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHE----------DFSEDTYRTL---TAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred Chh----------hHHHHHHHHH---HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 963 2222223333 345669999999987665555566666667899999999999864
No 257
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.51 E-value=6.4e-14 Score=109.58 Aligned_cols=108 Identities=25% Similarity=0.340 Sum_probs=67.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc--eeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL--ALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~--~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
||+++|.+|||||||+++|++.... .......+.+.......... .+.+||++|... +...+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE----------FYSQHQFF 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC----------HHCTSHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccce----------ecccccch
Confidence 7999999999999999999997643 12233334444333333322 478999999632 11111222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc-----CCCCEEEEeecCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ-----NQIPMTLVFTKCD 247 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~-----~~~pvivV~NK~D 247 (308)
+.. ++++++|+|.+++.+.... ++..|+.. .+.|+++|+||.|
T Consensus 71 ~~~---~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 LKK---ADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHH---SCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hhc---CcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 333 3459999999987655553 34444442 4699999999998
No 258
>PRK13768 GTPase; Provisional
Probab=99.49 E-value=3.4e-13 Score=119.78 Aligned_cols=121 Identities=25% Similarity=0.242 Sum_probs=75.9
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKC 246 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~ 246 (308)
.+.++||||..+...... .+..+.+. +.... .+++++|+|++...+..+.....++. ..++|+++|+||+
T Consensus 98 ~~~~~d~~g~~~~~~~~~---~~~~~~~~-l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~ 172 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRE---SGRKLVER-LSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKA 172 (253)
T ss_pred CEEEEeCCcHHHHHhhhH---HHHHHHHH-HHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhH
Confidence 689999999754221122 12223322 22211 56799999998776666654444432 4689999999999
Q ss_pred CCCCcccCCCCCchhhHHH------------------------HHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 247 DKRKKKKNGGKRPEENLND------------------------FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
|+.+..+ .....+. +.+.+.+. ....+++++||++++|+++++++|.+.+
T Consensus 173 D~~~~~~-----~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~-~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 173 DLLSEEE-----LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEET-GLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhcCchh-----HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHH-CCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 9986543 1111111 11112221 2235899999999999999999998876
Q ss_pred H
Q 021750 303 N 303 (308)
Q Consensus 303 ~ 303 (308)
.
T Consensus 247 ~ 247 (253)
T PRK13768 247 C 247 (253)
T ss_pred C
Confidence 4
No 259
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.8e-13 Score=127.23 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=112.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCc-ce------------eccCCCCceEEEE---EEEeCC---CEEEecCCCc
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKK-LA------------LTSKTPGKTQCIN---HFRIND---SWYLVDLPGY 181 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~-~~------------~~~~~~~~t~~~~---~~~~~~---~~~liDtpG~ 181 (308)
|.+...+++||-.-.-|||||..+|+.-.. +. .+....|.|...+ .+..++ .+.++||||+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 456678999999999999999999986321 00 1223446665432 111222 5889999998
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchh
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEE 261 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~ 261 (308)
.+.... .-+....++++++|+|++.+...+...-....-+.+..+|.|+||+|++..+
T Consensus 136 vDFs~E-------------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~ad--------- 193 (650)
T KOG0462|consen 136 VDFSGE-------------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSAD--------- 193 (650)
T ss_pred ccccce-------------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCC---------
Confidence 753321 1133344566999999999988877654555557889999999999998765
Q ss_pred hHHHHHHHHHhhhc-CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 262 NLNDFQELIQGFFQ-TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 262 ~~~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.++....+.+.|. ...+++.+||++|.|+++++++|++.+
T Consensus 194 -pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 194 -PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred -HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence 4445555555444 346899999999999999999998864
No 260
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.48 E-value=6.2e-13 Score=127.07 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=94.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-c----------------------eec------cCCCCceEEEEEEEe--CC-
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-L----------------------ALT------SKTPGKTQCINHFRI--ND- 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-~----------------------~~~------~~~~~~t~~~~~~~~--~~- 171 (308)
...+|+++|..++|||||+.+|+..-. + +.. ....|.|.+.....+ ++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 345899999999999999999975210 0 000 112255555433333 33
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhHHHHHHHhccCCCC-EEEEe
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PIDLEYASWLGQNQIP-MTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~-------~~~~~l~~~~~~~~~p-vivV~ 243 (308)
.+.++||||+. + |.+........+|++++|+|+..+.- .+-.+...++...++| +|+++
T Consensus 86 ~i~liDtPGh~----------d---f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 86 YCTVIDAPGHR----------D---FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred EEEEEECCCHH----------H---HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 69999999954 2 55555555667788999999987521 2223344445556775 68899
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~e 293 (308)
||+|+..... ......+..+++...+.+.. ....+++++||++|+|+.+
T Consensus 153 NKmD~~~~~~-~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 153 NKMDATTPKY-SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EcccCCchhh-hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 9999862110 00002222334444443221 1237899999999999854
No 261
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=2.6e-12 Score=113.61 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEE--EeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHF--RIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+|+|.+|||||||+|+|++... ..++...+.|.....+ ..++ .+.+|||||+.+................
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~-~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERK-AATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 4456999999999999999999999754 3445555555544333 2334 7999999999864322211122222334
Q ss_pred HHHHhcCCccEEEEEEeCCC-CCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCccc
Q 021750 200 DYFLNRSTLVSVFLLIDASI-PAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKK 253 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~-~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~ 253 (308)
.|+. ....++++||...+. .....+..+.+.+.+ .-.++++|+||+|......
T Consensus 108 ~~l~-~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 108 RYLK-KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHh-ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 4443 334566777765543 234444455554442 2367999999999875543
No 262
>PTZ00258 GTP-binding protein; Provisional
Probab=99.46 E-value=2.3e-12 Score=120.12 Aligned_cols=86 Identities=20% Similarity=0.279 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeC------------------CCEEEecCCCccc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIN------------------DSWYLVDLPGYGY 183 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~liDtpG~~~ 183 (308)
.-.+|+|||.||||||||+|+|++.+ ..+.+.|++|.... .+.+. .++.++||||+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 34599999999999999999998865 56788888886532 22222 1489999999986
Q ss_pred CCC-chhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 184 AAA-PRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 184 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
+.. +..+ ...++.....+|++++|+|+.
T Consensus 98 ga~~g~gL-------g~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGL-------GNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHH-------HHHHHHHHHHCCEEEEEEeCC
Confidence 432 2332 233444445567799999984
No 263
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.44 E-value=2.6e-12 Score=111.18 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=99.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceE--EEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ--CINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~--~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+|+|+|.+|+||||++|.|++.+...........|. ......+++ .+.++||||+.+.....+ .....+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~--~~~~~i~~~l~~ 79 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE--EIIREIKRCLSL 79 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH--HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH--HHHHHHHHHHHh
Confidence 799999999999999999999764222211122222 223334555 799999999865433222 011223332334
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHH-----HHHHHHHhh
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLN-----DFQELIQGF 273 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~ 273 (308)
...+.+++++|+... ..+..+....+++.. .-.-++||++.+|...... ..+.++ .+.+.++..
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-----~~~~l~~~~~~~l~~li~~c 153 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS-----LEDYLKKESNEALQELIEKC 153 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-----HHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc-----HHHHHhccCchhHhHHhhhc
Confidence 566788899999998 566666554544432 3456899999999776442 222232 123333322
Q ss_pred hcCCCCEEEeecC------CCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSV------TNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~------~g~gi~el~~~i~~~~~~~ 305 (308)
.-.++.++.+ ....+.+|++.|.+++.+.
T Consensus 154 ---~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 154 ---GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ---TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 3467777666 3467889999998887764
No 264
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=6.6e-13 Score=121.59 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc-----------------------ceec------cCCCCceEEEEEEEe--CC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK-----------------------LALT------SKTPGKTQCINHFRI--ND 171 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~-----------------------~~~~------~~~~~~t~~~~~~~~--~~ 171 (308)
+...+++++|...+|||||+.+|+..-. .+.+ ....|.|.+.....+ +.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 3445899999999999999999986310 0111 112366666544443 33
Q ss_pred -CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-------ChhHHHHHHHhccCC-CCEEEE
Q 021750 172 -SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-------KPIDLEYASWLGQNQ-IPMTLV 242 (308)
Q Consensus 172 -~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-------~~~~~~l~~~~~~~~-~pvivV 242 (308)
.++++|+||+.+ |.+..+..+..+|+.++|+|+..+. ..+..+..-+....+ ..+||+
T Consensus 85 ~~~tIiDaPGHrd-------------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa 151 (428)
T COG5256 85 YNFTIIDAPGHRD-------------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA 151 (428)
T ss_pred ceEEEeeCCchHH-------------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence 699999999642 7777777888889999999998762 223333222333233 457899
Q ss_pred eecCCCCCcccCCCCCchhhHHHHHHHHHh---hhc---CCCCEEEeecCCCCCHHHH
Q 021750 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQG---FFQ---TAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 243 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~vSA~~g~gi~el 294 (308)
+||+|+.+-. ++..+++...+.. .++ ...+|++|||..|+|+.+.
T Consensus 152 vNKMD~v~wd-------e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 152 VNKMDLVSWD-------EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEcccccccC-------HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 9999999743 2333333333322 222 2478999999999998653
No 265
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.44 E-value=2.2e-13 Score=106.74 Aligned_cols=154 Identities=15% Similarity=0.159 Sum_probs=107.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC--CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
....+|+++|-.|+|||||+..|.+.+. ...+++.|. ....+.+++ ++.+||..|.. .++..|..
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GF--n~k~v~~~g~f~LnvwDiGGqr----------~IRpyWsN 81 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGF--NTKKVEYDGTFHLNVWDIGGQR----------GIRPYWSN 81 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCc--ceEEEeecCcEEEEEEecCCcc----------ccchhhhh
Confidence 4456999999999999999999988742 334444443 344455555 78999999953 45568999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhH--HHHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh--h
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPID--LEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG--F 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~--~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 273 (308)
||.+.+. ++||+|+++.-.+.+ .++.+++. ....|+.|-.||-|+.-... .++....++- .
T Consensus 82 Yyenvd~---lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~---------~eeia~klnl~~l 149 (185)
T KOG0074|consen 82 YYENVDG---LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK---------VEEIALKLNLAGL 149 (185)
T ss_pred hhhccce---EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc---------hHHHHHhcchhhh
Confidence 9988766 899999776543333 24444444 36799999999999885443 2222222211 0
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
-...+.+-+|||.+++|+.+-.+|++.-
T Consensus 150 rdRswhIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 150 RDRSWHIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred hhceEEeeeCccccccCccCcchhhhcC
Confidence 1123678899999999999988888754
No 266
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.43 E-value=1.8e-12 Score=125.57 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=119.6
Q ss_pred CCCCCCchHHHHhhcCeEEcCCCCCcCCCchhhHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCC------CCCCCC
Q 021750 52 HAVEPEPEPHVAISLEKLFVPPETEVSIDDSSLSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTED------CPSDGL 125 (308)
Q Consensus 52 ~~~~~~~~~~~~~~~~~i~v~~gt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~------~~~~~~ 125 (308)
+.+..++.+.++....+++...-+.+...++.+++..+++-.++ .++... ....|......+.+ .+-.-.
T Consensus 43 ~~~~~~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqVlyrl~l~--~~~~~~--~~~s~d~a~~~a~~~ea~g~~~Ldfs 118 (763)
T TIGR00993 43 SEEHKEKLEKLQLIRVKFLRLAQRLGQTPENSIAAQVLYRLGLL--AGRQGG--GAFSLDAAKAMAEQLEAEGQDPLDFS 118 (763)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHh--hccCcc--ccccchhhHHHHhhhhhhhccccCcc
Confidence 66778889999999989888888999998888889999886653 333322 11122211111111 111223
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE-EEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH-FRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.+|+|+|.+||||||++|+|++.+........+++|..... ...++ .+.++||||+.+....+.....+......++.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Ls 198 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIK 198 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHh
Confidence 48999999999999999999997643333334566654322 23344 79999999998754332222232223333333
Q ss_pred hcCCccEEEEEEeCCCCCC-hhHHHHHHHhc-----cCCCCEEEEeecCCCCCc
Q 021750 204 NRSTLVSVFLLIDASIPAK-PIDLEYASWLG-----QNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~-~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~ 251 (308)
....++|+||+..+.... ..+....+.+. ..-.-+|||+|.+|....
T Consensus 199 -k~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 199 -KNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred -cCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 335677888876653322 23333333332 244678999999998863
No 267
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.42 E-value=5.2e-12 Score=100.34 Aligned_cols=156 Identities=14% Similarity=0.195 Sum_probs=110.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCce-EEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT-QCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
-||+++|.-+||||+++..|+..+........|... .....++.++ .+.+.||.|+... .++ +-++
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~--~~e-------Lprh 80 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG--QQE-------LPRH 80 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc--hhh-------hhHh
Confidence 389999999999999999999876433333333221 1122333322 5899999998643 233 6678
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHH-HHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEY-ASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l-~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
|+...++ .++|++..++.+++..++ ..|+. ...+|+++++||+|+.+..+ +..+..+.|++.-+
T Consensus 81 y~q~aDa---fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----vd~d~A~~Wa~rEk---- 149 (198)
T KOG3883|consen 81 YFQFADA---FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----VDMDVAQIWAKREK---- 149 (198)
T ss_pred HhccCce---EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh----cCHHHHHHHHhhhh----
Confidence 8776665 789999998888776543 33444 36789999999999976544 34455555655543
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+..++++|.+...+-|.|.++...+.
T Consensus 150 --vkl~eVta~dR~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 150 --VKLWEVTAMDRPSLYEPFTYLASRLH 175 (198)
T ss_pred --eeEEEEEeccchhhhhHHHHHHHhcc
Confidence 78999999999999999999887553
No 268
>PRK12740 elongation factor G; Reviewed
Probab=99.42 E-value=2.6e-12 Score=129.24 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=72.8
Q ss_pred EcCCCCCHHHHHHHHhcCCcc----e------eccC------CCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhh
Q 021750 131 VGRSNVGKSSLLNSLVRRKKL----A------LTSK------TPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELR 191 (308)
Q Consensus 131 vG~~~vGKSSLin~l~~~~~~----~------~~~~------~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~ 191 (308)
+|.+|+|||||+++|+..... . .+.+ ..|.|.. ...+.+++ .+.+|||||..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 699999999999999653210 0 0111 1233333 23445555 799999999642
Q ss_pred hchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 192 TDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
|...+..++. .+|++++|+|++.+.......+...+...++|+++|+||+|+...
T Consensus 73 --~~~~~~~~l~---~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 --FTGEVERALR---VLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred --HHHHHHHHHH---HhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2223333333 456699999999887777666666676778999999999998753
No 269
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.40 E-value=3.9e-12 Score=97.84 Aligned_cols=143 Identities=24% Similarity=0.290 Sum_probs=95.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
.|+++||..|+|||||.++|-+... ....+. -++++++ ..+||||--..+ +......+...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~--lykKTQ-------Ave~~d~-~~IDTPGEy~~~---------~~~Y~aL~tt~ 62 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQ-------AVEFNDK-GDIDTPGEYFEH---------PRWYHALITTL 62 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh--hhcccc-------eeeccCc-cccCCchhhhhh---------hHHHHHHHHHh
Confidence 4899999999999999999998742 122221 2223222 248999943211 11222233445
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeec
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA 285 (308)
+.++++++|-.++++.+...-. +..-..+|+|-|++|.|+.+.. ++....+.+.+.. ..++|.+|+
T Consensus 63 ~dadvi~~v~~and~~s~f~p~---f~~~~~k~vIgvVTK~DLaed~---------dI~~~~~~L~eaG--a~~IF~~s~ 128 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPPG---FLDIGVKKVIGVVTKADLAEDA---------DISLVKRWLREAG--AEPIFETSA 128 (148)
T ss_pred hccceeeeeecccCccccCCcc---cccccccceEEEEecccccchH---------hHHHHHHHHHHcC--CcceEEEec
Confidence 6678899999988876654432 2223457799999999998532 3555555554432 378999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQL 301 (308)
Q Consensus 286 ~~g~gi~el~~~i~~~ 301 (308)
.++.|++++++++...
T Consensus 129 ~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 129 VDNQGVEELVDYLASL 144 (148)
T ss_pred cCcccHHHHHHHHHhh
Confidence 9999999999998753
No 270
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.38 E-value=2.3e-11 Score=106.62 Aligned_cols=126 Identities=24% Similarity=0.352 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcce----eccCCCC----------------------------------------
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLA----LTSKTPG---------------------------------------- 159 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~----~~~~~~~---------------------------------------- 159 (308)
..|.|+++|..|+||||+++++++..+.+ ..+..|.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999864211 1111110
Q ss_pred -----ceEEEEEEEeC----CCEEEecCCCcccC---CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhH-H
Q 021750 160 -----KTQCINHFRIN----DSWYLVDLPGYGYA---AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID-L 226 (308)
Q Consensus 160 -----~t~~~~~~~~~----~~~~liDtpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~-~ 226 (308)
...+...+.+. -.++++||||+... .....+...+..+...|+...+. ++++|+|+.......+ .
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~--IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEEC--LILAVTPANVDLANSDAL 182 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccC--eEEEEEECCCCCCchhHH
Confidence 00000111121 16899999999642 11233444667788888776554 4899999987766655 5
Q ss_pred HHHHHhccCCCCEEEEeecCCCCCc
Q 021750 227 EYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 227 ~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
++.+++...++|+++|+||+|..+.
T Consensus 183 ~ia~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHcCCcEEEEEECCCCCCc
Confidence 8888888889999999999999864
No 271
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.38 E-value=1.3e-11 Score=113.73 Aligned_cols=84 Identities=24% Similarity=0.295 Sum_probs=61.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC------------------CEEEecCCCcccCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND------------------SWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~------------------~~~liDtpG~~~~~ 185 (308)
.+|+|||.||||||||+|+|++.+ +.+...|++|.... .+.+.+ ++.++|+||+..+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 489999999999999999999976 56777888886532 233222 48999999998643
Q ss_pred -CchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 186 -APRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 186 -~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
.+.+ +...++.....+|++++|+|+.
T Consensus 81 ~~g~g-------lg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEG-------LGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHH-------HHHHHHHHHHhCCEEEEEEeCC
Confidence 2223 3344555555677899999985
No 272
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.37 E-value=7.6e-12 Score=114.55 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=66.8
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.++++||+|++.... . + ...+|+++++++...+...+... ...+ ...-++|+||+|+...
T Consensus 150 d~viieT~Gv~qs~~----------~----i--~~~aD~vlvv~~p~~gd~iq~~k-~gi~---E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 150 DVILVETVGVGQSET----------A----V--AGMVDFFLLLQLPGAGDELQGIK-KGIM---ELADLIVINKADGDNK 209 (332)
T ss_pred CEEEEECCCCccchh----------H----H--HHhCCEEEEEecCCchHHHHHHH-hhhh---hhhheEEeehhcccch
Confidence 689999999873110 1 1 12356688887754443332211 1111 2334899999998864
Q ss_pred ccCCCCCchhhHHHHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 252 KKNGGKRPEENLNDFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.. ......++.+.+.... .+..|++.+||++|.|+++|++.|.+.+..+
T Consensus 210 ~~-----a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 210 TA-----ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred hH-----HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 32 2233344444443211 1337899999999999999999999987654
No 273
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.37 E-value=4.8e-12 Score=108.68 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=104.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCce--EEEEEEEeCC-CEEEecCCCcccC-CCchhhhhchHH
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRIND-SWYLVDLPGYGYA-AAPRELRTDWDK 196 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t--~~~~~~~~~~-~~~liDtpG~~~~-~~~~~~~~~~~~ 196 (308)
...|..+|+++|.|.||||||+..++.... .......+| .....+.+++ .+.++|.||++++ +.+.+.+
T Consensus 58 ~KsGdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG----- 130 (364)
T KOG1486|consen 58 LKSGDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG----- 130 (364)
T ss_pred eccCCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC-----
Confidence 456677999999999999999999998542 222233333 3345677777 8999999999885 3344422
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhH---HHH----------------------------------------HHHhc
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPID---LEY----------------------------------------ASWLG 233 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~---~~l----------------------------------------~~~~~ 233 (308)
++.+..+..+|++++|+|++....... .++ ...+.
T Consensus 131 --RQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILh 208 (364)
T KOG1486|consen 131 --RQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILH 208 (364)
T ss_pred --ceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHH
Confidence 233455666788999999975431110 000 00000
Q ss_pred ---------------------------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC
Q 021750 234 ---------------------------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286 (308)
Q Consensus 234 ---------------------------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 286 (308)
...++++.|.||+|... ++++-+..+ .+.-+-+|+.
T Consensus 209 eykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs------------~eevdrlAr-----~PnsvViSC~ 271 (364)
T KOG1486|consen 209 EYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS------------IEEVDRLAR-----QPNSVVISCN 271 (364)
T ss_pred HHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceec------------HHHHHHHhc-----CCCcEEEEec
Confidence 03467889999999874 333322222 2567889999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 021750 287 TNQGRDEILLHMAQLRN 303 (308)
Q Consensus 287 ~g~gi~el~~~i~~~~~ 303 (308)
.+.|++.+++.|++.+.
T Consensus 272 m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 272 MKLNLDRLLERIWEELN 288 (364)
T ss_pred cccCHHHHHHHHHHHhc
Confidence 99999999999988764
No 274
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.4e-12 Score=114.05 Aligned_cols=161 Identities=19% Similarity=0.269 Sum_probs=110.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc----------cee---cc-----CCCCceE------------EEEEEEeCCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK----------LAL---TS-----KTPGKTQ------------CINHFRINDS 172 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~----------~~~---~~-----~~~~~t~------------~~~~~~~~~~ 172 (308)
+...+|+.+|.-.-|||||..+|++--- +.+ +. ..+.+.. .-...++-++
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 3456999999999999999999998310 000 00 0000000 0000012235
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC----ChhHHHHHHHhccCCCCEEEEeecCCC
Q 021750 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA----KPIDLEYASWLGQNQIPMTLVFTKCDK 248 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~----~~~~~~l~~~~~~~~~pvivV~NK~Dl 248 (308)
+.++|.||+. -++...+..+..+|+.++|++++.+. +..++..++.+. -+.++||-||+|+
T Consensus 88 VSfVDaPGHe-------------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDl 152 (415)
T COG5257 88 VSFVDAPGHE-------------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDL 152 (415)
T ss_pred EEEeeCCchH-------------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccce
Confidence 7899999953 15555667777788999999998653 333333333443 3678999999999
Q ss_pred CCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
...++ ..++.++++++++.......|++++||..+.|||-|+++|.+.+.
T Consensus 153 V~~E~-----AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 153 VSRER-----ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred ecHHH-----HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 97654 566677777777766677899999999999999999999988753
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.36 E-value=1.6e-11 Score=110.49 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+||||||++|+|++.+. ..++...+.+... .....++ ++.+|||||+.+..... .......+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v-~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~---e~~~~~ik 111 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERI-ATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN---DQAVNIIK 111 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHH---HHHHHHHH
Confidence 4456999999999999999999998753 4455555443322 2222344 89999999997642211 12334555
Q ss_pred HHHHhcCCccEEEEEEeCCC-CCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCc
Q 021750 200 DYFLNRSTLVSVFLLIDASI-PAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~-~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~ 251 (308)
.|+.. ...|+++||...+. .....+..+.+.+.. ...++|||+|++|....
T Consensus 112 ~~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 112 RFLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 55443 45788899955432 244444444443332 34679999999997743
No 276
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.36 E-value=1.5e-11 Score=126.49 Aligned_cols=153 Identities=21% Similarity=0.264 Sum_probs=95.6
Q ss_pred CCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--C-------------------CCEEEecCCCcccCCCchhhhhch
Q 021750 136 VGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--N-------------------DSWYLVDLPGYGYAAAPRELRTDW 194 (308)
Q Consensus 136 vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-------------------~~~~liDtpG~~~~~~~~~~~~~~ 194 (308)
++||||+.+|.+... .....-|.|+.+..+.+ + ..+.+|||||+. .|
T Consensus 472 ~~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe----------~F 539 (1049)
T PRK14845 472 VHNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE----------AF 539 (1049)
T ss_pred cccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH----------HH
Confidence 349999999998642 22333455554432221 1 038999999953 33
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCC--C-------CchhhHHH
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGG--K-------RPEENLND 265 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~--~-------~~~~~~~~ 265 (308)
..+.. .....+|++++|+|++++...+..+...++...++|+++|+||+|+........ . ..+...++
T Consensus 540 ~~lr~---~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e 616 (1049)
T PRK14845 540 TSLRK---RGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE 616 (1049)
T ss_pred HHHHH---hhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence 22322 233456789999999987777776667777777899999999999964211000 0 00111222
Q ss_pred HHHH-------HHh------------hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 266 FQEL-------IQG------------FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 266 ~~~~-------~~~------------~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+... +.+ .+....+++++||++|+|+++|+.+|..+..
T Consensus 617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 2111 111 1234579999999999999999998876544
No 277
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.2e-11 Score=110.47 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=105.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCccee-----ccCCCCceEEEE--EEEe--------CC--CEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLAL-----TSKTPGKTQCIN--HFRI--------ND--SWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~-----~~~~~~~t~~~~--~~~~--------~~--~~~liDtpG~~~~~~~~ 188 (308)
++++++|.-.+|||||..+|..-...+. .+...|.|.+.. .+.. .. ++.++|+||..
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa------ 81 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA------ 81 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH------
Confidence 6899999999999999999986321111 122234444432 1111 11 57999999953
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
.+.+..+..+..+|+.++|+|+..+...+..+.+-+-...-+..+||+||+|+..+.+ ....+++..+
T Consensus 82 -------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~q-----r~ski~k~~k 149 (522)
T KOG0461|consen 82 -------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQ-----RASKIEKSAK 149 (522)
T ss_pred -------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchh-----hhhHHHHHHH
Confidence 2667777788888999999999987665554433333334567888999999876543 2333444444
Q ss_pred HHHhh-----hcCCCCEEEeecCCC----CCHHHHHHHHHHHH
Q 021750 269 LIQGF-----FQTAPPWIMTSSVTN----QGRDEILLHMAQLR 302 (308)
Q Consensus 269 ~~~~~-----~~~~~~~~~vSA~~g----~gi~el~~~i~~~~ 302 (308)
.+++. |....|++++||+.| +++.||.+.|...+
T Consensus 150 k~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 150 KVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 44432 444589999999999 67777776666544
No 278
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.35 E-value=2.8e-12 Score=121.49 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=98.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-ceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-KTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..+|+++|..||||||||-+|+..++...+-+... ++. ...+.-+. ...++||+--. +. +..+++
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~I-PadvtPe~vpt~ivD~ss~~-----~~-----~~~l~~-- 75 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILI-PADVTPENVPTSIVDTSSDS-----DD-----RLCLRK-- 75 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCCcccc-CCccCcCcCceEEEeccccc-----ch-----hHHHHH--
Confidence 45999999999999999999999877544333221 111 11111122 47899996321 11 012223
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc--------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+...+++++++++.+++.+..... ..|+.. .++|+|+|+||+|.......+ .+..+..+...+.
T Consensus 76 -EirkA~vi~lvyavd~~~T~D~is-t~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s---~e~~~~pim~~f~--- 147 (625)
T KOG1707|consen 76 -EIRKADVICLVYAVDDESTVDRIS-TKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNS---DEVNTLPIMIAFA--- 147 (625)
T ss_pred -HHhhcCEEEEEEecCChHHhhhhh-hhhhhhhhcccCCCccCCEEEEeeccCCccccccc---hhHHHHHHHHHhH---
Confidence 233455688888888765554432 445532 579999999999998765421 1112333443333
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
....+|+|||++-.++.|+|.+..+.+
T Consensus 148 -EiEtciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 148 -EIETCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred -HHHHHHhhhhhhhhhhHhhhhhhhhee
Confidence 336799999999999999999877643
No 279
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.35 E-value=2e-12 Score=108.14 Aligned_cols=112 Identities=26% Similarity=0.376 Sum_probs=60.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe----CCCEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI----NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+.|.|+|++|+|||+|...|..+.....++... . .. .+.. ...+.++|+||+.+ ++..+..+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e--~-n~-~~~~~~~~~~~~~lvD~PGH~r----------lr~~~~~~ 69 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME--N-NI-AYNVNNSKGKKLRLVDIPGHPR----------LRSKLLDE 69 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SS--E-EE-ECCGSSTCGTCECEEEETT-HC----------CCHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc--C-Cc-eEEeecCCCCEEEEEECCCcHH----------HHHHHHHh
Confidence 479999999999999999999985433322221 1 11 1222 23799999999753 11112222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHh---------ccCCCCEEEEeecCCCCCcc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWL---------GQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~---------~~~~~pvivV~NK~Dl~~~~ 252 (308)
+.....+.+|+||+|++...... .+..+++ .....|++|++||.|+....
T Consensus 70 ~~~~~~~k~IIfvvDSs~~~~~~-~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 70 LKYLSNAKGIIFVVDSSTDQKEL-RDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHGGEEEEEEEEETTTHHHHH-HHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hhchhhCCEEEEEEeCccchhhH-HHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 11223344599999997422111 1112221 13689999999999998654
No 280
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.35 E-value=4e-12 Score=117.30 Aligned_cols=169 Identities=19% Similarity=0.126 Sum_probs=91.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC----cceeccCCCCceEEEEEEEeCC--CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK----KLALTSKTPGKTQCINHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~----~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
..+|+|+|.+|+|||||||+|.|-. ..+.+. ...+|.....|.... .+++||+||++...- -.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG-v~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f----------~~ 103 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTG-VVETTMEPTPYPHPKFPNVTLWDLPGIGTPNF----------PP 103 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SS-SHSCCTS-EEEE-SS-TTEEEEEE--GGGSS------------H
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC-CCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC----------CH
Confidence 4599999999999999999997721 111111 123444455555443 799999999864321 11
Q ss_pred HHHHH--hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC-Ccc-cCC--CCCchhhHHHHHHHHHh
Q 021750 199 KDYFL--NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR-KKK-KNG--GKRPEENLNDFQELIQG 272 (308)
Q Consensus 199 ~~~~~--~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~-~~~-~~~--~~~~~~~~~~~~~~~~~ 272 (308)
..|+. ....+|.++++.+ ...+..+..+...+...++|+++|-+|+|.. ... ... ....++.++++++.+.+
T Consensus 104 ~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 104 EEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp HHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred HHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 23332 3344565555443 3466777888888888999999999999961 111 000 00122334555444433
Q ss_pred hhc----CCCCEEEeecCCC--CCHHHHHHHHHHHHHHHH
Q 021750 273 FFQ----TAPPWIMTSSVTN--QGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 273 ~~~----~~~~~~~vSA~~g--~gi~el~~~i~~~~~~~~ 306 (308)
.+. ..+++|-+|+.+- .....|.+.|.+-+...+
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 322 3478999999864 457777777776554433
No 281
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=5.4e-12 Score=117.00 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=107.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcc-------e------eccCCCCceEEEEE----EEe-CC---CEEEecCC
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKL-------A------LTSKTPGKTQCINH----FRI-ND---SWYLVDLP 179 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~-------~------~~~~~~~~t~~~~~----~~~-~~---~~~liDtp 179 (308)
+...+.+..++-.-.-|||||..+|+..... . ......|.|...+. |.. ++ .+.++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 3455678999999999999999999863210 0 12233466664332 222 22 47899999
Q ss_pred CcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCc
Q 021750 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRP 259 (308)
Q Consensus 180 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~ 259 (308)
|+.+.+- +.-+....+.++++|+|++.+...+...-....-+.+.-++-|+||+||+..+
T Consensus 85 GHVDFsY-------------EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad------- 144 (603)
T COG0481 85 GHVDFSY-------------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAAD------- 144 (603)
T ss_pred CccceEE-------------EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCC-------
Confidence 9865221 11122223344899999999987776544444456788899999999998754
Q ss_pred hhhHHHHHHHHHhhhc-CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 260 EENLNDFQELIQGFFQ-TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.++..+.+.+.++ .....+.+||++|.||+++++.|.+.+
T Consensus 145 ---pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 145 ---PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred ---HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhC
Confidence 3444444444433 235789999999999999999998764
No 282
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.33 E-value=4.1e-11 Score=104.26 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=77.6
Q ss_pred CEEEecCCCccc----CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC---CChhHH--HHHHHhccCCCCEEEE
Q 021750 172 SWYLVDLPGYGY----AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP---AKPIDL--EYASWLGQNQIPMTLV 242 (308)
Q Consensus 172 ~~~liDtpG~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~---~~~~~~--~l~~~~~~~~~pvivV 242 (308)
+++++||||.++ ...+. ++-+.+... .-.+|+||+|.... .++... ....++-....|+|+|
T Consensus 117 ~~~liDTPGQIE~FtWSAsGs--------IIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivv 187 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGS--------IITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVV 187 (366)
T ss_pred CEEEEcCCCceEEEEecCCcc--------chHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEE
Confidence 589999999875 23332 222222222 22358999998643 233221 1122333578999999
Q ss_pred eecCCCCCcccCCCCCchhhHHHHHHHHHh------------------hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQG------------------FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 243 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+||+|+.+..-.. ....+.+.|++.+++ .|......+.|||.+|+|.+++|..+.+.+++
T Consensus 188 fNK~Dv~d~~fa~--eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 188 FNKTDVSDSEFAL--EWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred EecccccccHHHH--HHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 9999998754200 012223344444432 23345789999999999999999999998887
Q ss_pred HH
Q 021750 305 WL 306 (308)
Q Consensus 305 ~~ 306 (308)
+.
T Consensus 266 y~ 267 (366)
T KOG1532|consen 266 YE 267 (366)
T ss_pred HH
Confidence 65
No 283
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.31 E-value=9.1e-12 Score=111.24 Aligned_cols=82 Identities=23% Similarity=0.288 Sum_probs=58.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC------------------CEEEecCCCcccCC-C
Q 021750 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND------------------SWYLVDLPGYGYAA-A 186 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~------------------~~~liDtpG~~~~~-~ 186 (308)
|+|+|.||||||||+|+|++.+ ..+...|++|.... .+.+.+ .+.++|+||+..+. .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~--~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC--CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 5899999999999999999976 35677788876532 233322 38999999998643 2
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
+.+ +...++.....+|++++|+|+.
T Consensus 79 ~~g-------lg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEG-------LGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhH-------HHHHHHHHHHhCCEEEEEEeCc
Confidence 333 3334444555667899999974
No 284
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2.7e-11 Score=101.76 Aligned_cols=161 Identities=21% Similarity=0.293 Sum_probs=97.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..|.++|..++|||+|.-.|..+.... .++..|. ...+.++. ...++|.||.. +.+.-+.+|+.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn----~a~~r~gs~~~~LVD~PGH~----------rlR~kl~e~~~ 104 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN----EATYRLGSENVTLVDLPGHS----------RLRRKLLEYLK 104 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccc----eeeEeecCcceEEEeCCCcH----------HHHHHHHHHcc
Confidence 479999999999999999998864322 2222222 22333333 67999999964 34445556666
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--H-HHHHh-----ccCCCCEEEEeecCCCCCcccCCC--CCchhhHHHHHHHHH--
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--E-YASWL-----GQNQIPMTLVFTKCDKRKKKKNGG--KRPEENLNDFQELIQ-- 271 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~-l~~~~-----~~~~~pvivV~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~-- 271 (308)
....+..++||+|+......... + +...+ .....|++|++||.|+.-...... ...+.++..+.+.-.
T Consensus 105 ~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~ 184 (238)
T KOG0090|consen 105 HNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSAL 184 (238)
T ss_pred ccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 54455569999999865443221 1 11111 136789999999999976542100 001111222221111
Q ss_pred -h----------------------hhc-CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 272 -G----------------------FFQ-TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 272 -~----------------------~~~-~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
. ... ..+.+.++|++++ +++++-+||.+.
T Consensus 185 ~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 185 RSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred hccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 000 1256888999998 899999999875
No 285
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.30 E-value=2.9e-11 Score=104.26 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=51.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCC
Q 021750 211 VFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQG 290 (308)
Q Consensus 211 vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g 290 (308)
.+.|+|......... ........|.++++||+|+.+.. .....++.+.+++.. ...+++++||++|+|
T Consensus 127 ~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~-------~~~~~~~~~~l~~~~-~~~~i~~~Sa~~g~g 194 (207)
T TIGR00073 127 RVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAV-------GFDVEKMKADAKKIN-PEAEIILMSLKTGEG 194 (207)
T ss_pred EEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccc-------hhhHHHHHHHHHHhC-CCCCEEEEECCCCCC
Confidence 345677665433221 11122357889999999997532 112334444444332 347899999999999
Q ss_pred HHHHHHHHHHHH
Q 021750 291 RDEILLHMAQLR 302 (308)
Q Consensus 291 i~el~~~i~~~~ 302 (308)
++++++++.+..
T Consensus 195 v~~l~~~i~~~~ 206 (207)
T TIGR00073 195 LDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 286
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.30 E-value=3.1e-11 Score=123.82 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-e-------eccC------CCCceEEE--EEEEeC----------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-A-------LTSK------TPGKTQCI--NHFRIN---------------- 170 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-~-------~~~~------~~~~t~~~--~~~~~~---------------- 170 (308)
..+.+|+|+|..++|||||+++|+..... . .+.+ ..|.|... ..+.+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 45679999999999999999999864321 0 0000 11223221 112221
Q ss_pred C-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 171 D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 171 ~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
+ .+.++||||+.+ |..+.......+|++++|+|+..+...+...+.+++...++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~d-------------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHH-------------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 2 578999999742 55555666677788999999999988777777888888899999999999987
No 287
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.6e-11 Score=110.40 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=117.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCc-ceeccCCCCceEEEEEEEeC---CCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKK-LALTSKTPGKTQCINHFRIN---DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
-|+..|.---|||||+.++.+..- ...-...-|+|.+...+..+ +.+.++|.||+. ++.+..+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~-------------~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP-------------DFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcH-------------HHHHHHH
Confidence 378889999999999999998531 11223455888887665542 379999999964 2777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCE-EEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPM-TLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pv-ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
.....+|.+++|+|++++...+..+.+..+...+++- ++|+||+|+.+... .++.++++...+. -...++|
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r-----~e~~i~~Il~~l~---l~~~~i~ 140 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEAR-----IEQKIKQILADLS---LANAKIF 140 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHH-----HHHHHHHHHhhcc---ccccccc
Confidence 7888889999999999888888777777777666665 99999999986432 2333333333333 1347889
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+|+.+|+||++|.+.|.++.+
T Consensus 141 ~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 141 KTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ccccccCCCHHHHHHHHHHhhh
Confidence 9999999999999999999984
No 288
>PTZ00416 elongation factor 2; Provisional
Probab=99.30 E-value=4.5e-11 Score=122.44 Aligned_cols=113 Identities=20% Similarity=0.212 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCC---------------CCceEEE--EEEEeC----------C-CEE
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKT---------------PGKTQCI--NHFRIN----------D-SWY 174 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~---------------~~~t~~~--~~~~~~----------~-~~~ 174 (308)
+.+.+|+++|..++|||||+++|+..... ..... .|.|... ..+.+. + .+.
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGI-ISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCC-cccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 44569999999999999999999974211 11111 1223221 122222 2 489
Q ss_pred EecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 175 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
++||||+.+ +..+.......+|++++|+|+..+...+...+.+.+...++|+++++||+|+.
T Consensus 96 liDtPG~~~-------------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHh-------------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 999999753 44445556667788999999999888877777888877889999999999987
No 289
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.29 E-value=2.1e-11 Score=109.43 Aligned_cols=153 Identities=18% Similarity=0.149 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcce---------ec----------------------cCCCCceEEEEEEEe---
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLA---------LT----------------------SKTPGKTQCINHFRI--- 169 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~---------~~----------------------~~~~~~t~~~~~~~~--- 169 (308)
...+++-+|...-||||||-+|+...+.- .. ....|.|.++....+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 45689999999999999999998753210 01 112366776533222
Q ss_pred CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCC
Q 021750 170 NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDK 248 (308)
Q Consensus 170 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl 248 (308)
.++|++.||||+. + +++.....+..+++.++++|+..+...+.....-+....+ +-+++.+||+||
T Consensus 85 KRkFIiADTPGHe----------Q---YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGHE----------Q---YTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcHH----------H---HhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 3489999999953 1 5666666777788999999998876655543222222233 457889999999
Q ss_pred CCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHH
Q 021750 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 292 (308)
.+..+.. .++...++.....+..-....++++||+.|+|+-
T Consensus 152 vdy~e~~---F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 152 VDYSEEV---FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cccCHHH---HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 9864321 2222333333333332344689999999999974
No 290
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.29 E-value=3.9e-11 Score=121.54 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-e-------eccC------CCCceEEE--EEE--EeC---CCEEEecCCCc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-A-------LTSK------TPGKTQCI--NHF--RIN---DSWYLVDLPGY 181 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-~-------~~~~------~~~~t~~~--~~~--~~~---~~~~liDtpG~ 181 (308)
..+.+|+++|..++|||||+.+|+..... . .+.+ ..|.|... ..+ .++ ..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 35669999999999999999999863211 0 0000 01222221 112 222 26889999997
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
.+ +..........+|++++|+|+..+...+...+.......+.|.|+++||+|+..
T Consensus 98 ~d-------------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VD-------------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred cC-------------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence 53 222333344455779999999988777666666665556789999999999864
No 291
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.29 E-value=9.4e-11 Score=108.29 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCC---cce-----------eccCCCC---ceEEEEE-------EEeC----CCEE
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRK---KLA-----------LTSKTPG---KTQCINH-------FRIN----DSWY 174 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~---~~~-----------~~~~~~~---~t~~~~~-------~~~~----~~~~ 174 (308)
.|..-|+++|+.|+|||||||+|.+.- .++ .++..+| +|.+... +... +++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 567789999999999999999999861 112 4556667 5544332 2223 4799
Q ss_pred EecCCCcccCCC-chhhhhc--------------hHH----HHHHHHHhcCCccEEEEEE-eCC------CCCChhHHHH
Q 021750 175 LVDLPGYGYAAA-PRELRTD--------------WDK----FTKDYFLNRSTLVSVFLLI-DAS------IPAKPIDLEY 228 (308)
Q Consensus 175 liDtpG~~~~~~-~~~~~~~--------------~~~----~~~~~~~~~~~~~~vl~vi-D~~------~~~~~~~~~l 228 (308)
++||+|+....+ +.....+ |.. -++..+.. ..++.++|. |.+ ......+.++
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d--hstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE--HSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHh--cCcEEEEEEcCCCccccccccchHHHHHH
Confidence 999999965322 2211111 000 02333332 234456666 885 2334445567
Q ss_pred HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCC
Q 021750 229 ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVT 287 (308)
Q Consensus 229 ~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 287 (308)
...+.+.++|+++|+||+|-.... ...+.+.+.+.+ ..+++.+|+..
T Consensus 173 i~eLk~~~kPfiivlN~~dp~~~e----------t~~l~~~l~eky--~vpvl~v~c~~ 219 (492)
T TIGR02836 173 IEELKELNKPFIILLNSTHPYHPE----------TEALRQELEEKY--DVPVLAMDVES 219 (492)
T ss_pred HHHHHhcCCCEEEEEECcCCCCch----------hHHHHHHHHHHh--CCceEEEEHHH
Confidence 777888899999999999943211 122222333222 26788888754
No 292
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.8e-11 Score=98.64 Aligned_cols=155 Identities=23% Similarity=0.231 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
-|++++|-.|+|||||++.|-... .....|+-..| ...+.+++ .++.+|..|.. .-+..++.|+..
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDr-l~qhvPTlHPT--SE~l~Ig~m~ftt~DLGGH~----------qArr~wkdyf~~ 87 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPT--SEELSIGGMTFTTFDLGGHL----------QARRVWKDYFPQ 87 (193)
T ss_pred ceEEEEeecCCchhhHHHHHcccc-ccccCCCcCCC--hHHheecCceEEEEccccHH----------HHHHHHHHHHhh
Confidence 389999999999999999997753 34444443332 23445555 79999999964 334588888887
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc----
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ---- 275 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 275 (308)
+++ +++++|+.+.....+. ++...+. ....|+++.+||+|.+... .++++.......+....
T Consensus 88 v~~---iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------se~~l~~~l~l~~~t~~~~~v 158 (193)
T KOG0077|consen 88 VDA---IVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------SEDELRFHLGLSNFTTGKGKV 158 (193)
T ss_pred hce---eEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------cHHHHHHHHHHHHHhcccccc
Confidence 766 8999999876554432 2222222 2689999999999998754 33334333333322111
Q ss_pred -------CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 -------TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 -------~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
....+|.||...+.|.-+.|.|+.+.+
T Consensus 159 ~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 159 NLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred cccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 124678899999999888888887653
No 293
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.4e-10 Score=105.68 Aligned_cols=85 Identities=22% Similarity=0.240 Sum_probs=60.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EE------------eC-------CCEEEecCCCcccC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FR------------IN-------DSWYLVDLPGYGYA 184 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~------------~~-------~~~~liDtpG~~~~ 184 (308)
++++|||.||||||||.|+++... +....+|.+|.+.+. .. +. -.+.++|.+|+..+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 589999999999999999999975 445666666654321 11 11 13789999999874
Q ss_pred -CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021750 185 -AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~ 219 (308)
+.+.+++.+| +.+.+.+|+++.|+|+..
T Consensus 81 As~GeGLGNkF-------L~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 81 ASKGEGLGNKF-------LDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cccCCCcchHH-------HHhhhhcCeEEEEEEecC
Confidence 6777877653 333445667999999863
No 294
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.24 E-value=1.9e-10 Score=103.47 Aligned_cols=137 Identities=20% Similarity=0.382 Sum_probs=77.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccC--------CCCceEEEEE--EEeCC---CEEEecCCCcccCCCchh---
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSK--------TPGKTQCINH--FRIND---SWYLVDLPGYGYAAAPRE--- 189 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~--------~~~~t~~~~~--~~~~~---~~~liDtpG~~~~~~~~~--- 189 (308)
++|+++|.+|+|||||||.|++......... .......... +..++ .+.++||||++.......
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 6899999999999999999999753222111 1111122222 22233 688999999976433221
Q ss_pred -----hhhchHHHHHHHHH------hcCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCC
Q 021750 190 -----LRTDWDKFTKDYFL------NRSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGK 257 (308)
Q Consensus 190 -----~~~~~~~~~~~~~~------~~~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~ 257 (308)
+..+|...+.+-.. .-..+++|+|+++++ .+.+..|.+.++.+.. ..++|-|+.|+|....
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~------ 157 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTP------ 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-H------
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccCH------
Confidence 11122222211100 012346999999986 4677888777777664 6889999999999853
Q ss_pred CchhhHHHHHHHHHh
Q 021750 258 RPEENLNDFQELIQG 272 (308)
Q Consensus 258 ~~~~~~~~~~~~~~~ 272 (308)
+++..+.+.+..
T Consensus 158 ---~el~~~k~~i~~ 169 (281)
T PF00735_consen 158 ---EELQAFKQRIRE 169 (281)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
Confidence 345555555543
No 295
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.23 E-value=2.6e-11 Score=105.72 Aligned_cols=152 Identities=19% Similarity=0.286 Sum_probs=86.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----Cccee-----ccCCCCc----------------eEEEEEEE----------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLAL-----TSKTPGK----------------TQCINHFR---------- 168 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~-----~~~~~~~----------------t~~~~~~~---------- 168 (308)
-..|+|.|.||+|||||+++|... ..++. .++..|- ...+....
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~ 108 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR 108 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence 358999999999999999999762 22221 1222210 00111111
Q ss_pred -----------eCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChh--HHHHHHHhccC
Q 021750 169 -----------INDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPI--DLEYASWLGQN 235 (308)
Q Consensus 169 -----------~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~--~~~l~~~~~~~ 235 (308)
.+..++++.|.|++. . + . .-...+|.+++|+-+..+...+ ...++++
T Consensus 109 ~t~~~v~ll~aaG~D~IiiETVGvGQ-----s---E---~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---- 168 (266)
T PF03308_consen 109 ATRDAVRLLDAAGFDVIIIETVGVGQ-----S---E---V-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI---- 168 (266)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEESSST-----H---H---H-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCc-----c---H---H-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh----
Confidence 123578888888652 1 0 1 1123456677887776554433 2233433
Q ss_pred CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh----hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 236 QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG----FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 236 ~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.-++|+||+|+... .....++...+.- .-.+.+|++.+||.+++|+++|++.|.+..+...
T Consensus 169 --aDi~vVNKaD~~gA--------~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~ 233 (266)
T PF03308_consen 169 --ADIFVVNKADRPGA--------DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLK 233 (266)
T ss_dssp ---SEEEEE--SHHHH--------HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred --ccEEEEeCCChHHH--------HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 44899999996643 2334444444431 1124579999999999999999999998876544
No 296
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.22 E-value=1.3e-10 Score=94.04 Aligned_cols=60 Identities=42% Similarity=0.583 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.+..+++++|.+|||||||+|+|++.+. ..++..+|+|+....+.+++.+.+|||||+.+
T Consensus 81 ~~~~~~~~~G~~~vGKstlin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 140 (141)
T cd01857 81 KENATIGLVGYPNVGKSSLINALVGKKK-VSVSATPGKTKHFQTIFLTPTITLCDCPGLVF 140 (141)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCcccceEEEEeCCCEEEEECCCcCC
Confidence 3444899999999999999999999865 35777889988888888888899999999753
No 297
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.2e-11 Score=101.70 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=103.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C--CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D--SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++++++|..|.||||++++.+.+++...+..+.|.......+..+ + ++..|||.|... +.....-
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk----------~gglrdg 78 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEK----------KGGLRDG 78 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccccee----------ecccccc
Confidence 35799999999999999999999988765566666665544333333 2 688899999532 2123334
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
||..+.+ .++++|..+..+..+. .+|.. ..++|+++++||.|........ +.+.-...
T Consensus 79 yyI~~qc---AiimFdVtsr~t~~n~--~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~------------k~v~~~rk 141 (216)
T KOG0096|consen 79 YYIQGQC---AIIMFDVTSRFTYKNV--PRWHRDLVRVRENIPIVLCGNKVDIKARKVKA------------KPVSFHRK 141 (216)
T ss_pred cEEecce---eEEEeeeeehhhhhcc--hHHHHHHHHHhcCCCeeeeccceecccccccc------------ccceeeec
Confidence 5566655 6889999876655432 22222 2469999999999976543110 11110111
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+.++++||+++.|.+.-|.|+.+.+
T Consensus 142 knl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 142 KNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ccceeEEeecccccccccchHHHhhhh
Confidence 247899999999999999999998765
No 298
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.21 E-value=3e-10 Score=103.44 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCCCEEEEeecCCCCCcccCCCCCchhhHHHHH---HHHHhh-hcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 235 NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ---ELIQGF-FQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 235 ~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.++|.++|+||+|+..... .......+. ..+... ..+..+++++||++++|+++++++|.+...
T Consensus 171 ~~~~~ivv~NK~Dl~~~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 171 MEIADIYVVNKADGEGATN-----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhhccEEEEEcccccchhH-----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 4688999999999985431 000001110 111111 122357999999999999999999998765
No 299
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.21 E-value=4.8e-10 Score=104.00 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=108.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc--e------------eccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL--A------------LTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~--~------------~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~ 186 (308)
...+|+|+-...-|||||+..|+..... . ......|.|.-. ..+.+++ ++.++||||+.+...
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 3568999999999999999999974310 0 011233555532 3445555 899999999864322
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
..| +-..-+|.|++++|+..+...+.....+-.-..+.+-|+|+||+|.+..+ +++.+++.
T Consensus 84 EVE-------------Rvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Ar------p~~Vvd~v 144 (603)
T COG1217 84 EVE-------------RVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDAR------PDEVVDEV 144 (603)
T ss_pred hhh-------------hhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCC------HHHHHHHH
Confidence 111 22234567999999998877666544454445677788999999999875 56666666
Q ss_pred HHHHHhhhc----CCCCEEEeecCCCC----------CHHHHHHHHHHHH
Q 021750 267 QELIQGFFQ----TAPPWIMTSSVTNQ----------GRDEILLHMAQLR 302 (308)
Q Consensus 267 ~~~~~~~~~----~~~~~~~vSA~~g~----------gi~el~~~i~~~~ 302 (308)
.+.+-.... -..|+++.||+.|. ++..||+.|.+.+
T Consensus 145 fDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 145 FDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred HHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 665543321 24799999999874 6788888887754
No 300
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.20 E-value=5.7e-11 Score=120.10 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc--------eeccC------CCCceEEEE------EEEeCC-CEEEecCCCcc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL--------ALTSK------TPGKTQCIN------HFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~--------~~~~~------~~~~t~~~~------~~~~~~-~~~liDtpG~~ 182 (308)
...+|+++|..++|||||+++|+..... ....+ ..+.|.... .+..++ ++.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999999752100 00001 123333211 122233 68999999975
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+ |.......+. .+|++++|+|+..+.......+...+...++|+++++||+|...
T Consensus 98 ~----------f~~~~~~al~---~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 D----------FGGDVTRAMR---AVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred c----------cHHHHHHHHH---hcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 3 2223333333 44569999999988776666666666567789999999999874
No 301
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.20 E-value=7.6e-13 Score=108.41 Aligned_cols=159 Identities=20% Similarity=0.323 Sum_probs=109.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
+...+++.++|.-|+||||++.+.+...+...+..+.|..+......+++ +..+||..|.. +|..+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQe----------rfg~m 91 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQE----------RFGNM 91 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhh----------hhcce
Confidence 45568999999999999999999988655434444555554434444444 57889998843 44456
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc----------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ----------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~----------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
.+-||+.+.+ .++|||.++..++... ..|..+ .-.|+++..||||..+... .+....+.
T Consensus 92 trVyykea~~---~~iVfdvt~s~tfe~~--skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~------~~~~~~~d 160 (229)
T KOG4423|consen 92 TRVYYKEAHG---AFIVFDVTRSLTFEPV--SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK------NEATRQFD 160 (229)
T ss_pred EEEEecCCcc---eEEEEEccccccccHH--HHHHHhccCcccCCCCCcchheeccchhccChHhh------hhhHHHHH
Confidence 6677777666 7999999988776653 344432 3467899999999876432 12122222
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+..++ .....++++|++.+.|++|.-..+.+.+-
T Consensus 161 ~f~ke--ngf~gwtets~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 161 NFKKE--NGFEGWTETSAKENKNIPEAQRELVEKIL 194 (229)
T ss_pred HHHhc--cCccceeeeccccccChhHHHHHHHHHHH
Confidence 22222 12478999999999999999998887653
No 302
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.20 E-value=2.3e-10 Score=99.74 Aligned_cols=159 Identities=17% Similarity=0.190 Sum_probs=85.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--CC--CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--ND--SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
||+++|..++||||+.+.+..+. .+.-+..-+.|..+..-.+ .+ .+.+||+||........ +.......+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~-----~~~~~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY-----FNSQREEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT-----HTCCHHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc-----ccccHHHHH
Confidence 79999999999999999999863 2444455555554443333 33 78999999975322110 000122333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-HHHHh---c--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc-
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-YASWL---G--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ- 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~---~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~- 275 (308)
+.. .+++||+|+.+.....+.. +...+ . ..+..+.|.+.|+|+..... ..+..+...+.+.+...
T Consensus 75 ~~v---~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~-----r~~~~~~~~~~i~~~~~~ 146 (232)
T PF04670_consen 75 SNV---GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDE-----REEIFRDIQQRIRDELED 146 (232)
T ss_dssp CTE---SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHH-----HHHHHHHHHHHHHHHHHH
T ss_pred hcc---CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHH-----HHHHHHHHHHHHHHHhhh
Confidence 333 3599999998554433331 11111 1 36788999999999986543 22333333333333222
Q ss_pred ---CCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 276 ---TAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 276 ---~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
....++.+|-.+ +.+-+.+..+.+
T Consensus 147 ~~~~~~~~~~TSI~D-~Sly~A~S~Ivq 173 (232)
T PF04670_consen 147 LGIEDITFFLTSIWD-ESLYEAWSKIVQ 173 (232)
T ss_dssp TT-TSEEEEEE-TTS-THHHHHHHHHHH
T ss_pred ccccceEEEeccCcC-cHHHHHHHHHHH
Confidence 226788888877 456666665554
No 303
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.19 E-value=2.8e-10 Score=100.67 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=44.6
Q ss_pred CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH---hhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ---GFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 237 ~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+.-++|+||.|....+. ...++....+... ....|.+|++.+||.+|+|+++|++.|.+..+...
T Consensus 190 iaDi~vINKaD~~~A~~-----a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 190 IADIIVINKADRKGAEK-----AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred hhheeeEeccChhhHHH-----HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 45589999999655321 2222222222221 22346689999999999999999999999887654
No 304
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.17 E-value=1.5e-10 Score=102.93 Aligned_cols=157 Identities=21% Similarity=0.192 Sum_probs=99.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC--ceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG--KTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...+-|++||++|+||||||++|++....+....+.. .|.....+.-+..+.+.||-|+..+-. ..+-..|+..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP-~~LvaAF~AT--- 251 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLP-IQLVAAFQAT--- 251 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCc-HHHHHHHHHH---
Confidence 3456899999999999999999997543322211211 122223333344788999999875322 2222233333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhccCCCC-------EEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQNQIP-------MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~~~~p-------vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
+.....+|+++.|+|.++|.-+... ....-+...+.| ++=|-||+|..+... ..+
T Consensus 252 -LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----e~E----------- 314 (410)
T KOG0410|consen 252 -LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----EEE----------- 314 (410)
T ss_pred -HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----ccc-----------
Confidence 3445566789999999998655432 344444444443 566788888765331 000
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.-..+.+||++|+|++++++.+...+..
T Consensus 315 ----~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 315 ----KNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ----cCCccccccccCccHHHHHHHHHHHhhh
Confidence 0125789999999999999998877654
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.17 E-value=1.2e-10 Score=102.38 Aligned_cols=127 Identities=20% Similarity=0.201 Sum_probs=59.7
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH---HHHH--HhccCCCCEEEEeecC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL---EYAS--WLGQNQIPMTLVFTKC 246 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~---~l~~--~~~~~~~pvivV~NK~ 246 (308)
.+.++||||..+--.... ....+.+ .+.. ....++++++|+......... .+.. .....+.|.+.|+||+
T Consensus 92 ~y~l~DtPGQiElf~~~~---~~~~i~~-~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSD---SGRKIVE-RLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHHHSH---HHHHHHH-TSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEEech---hHHHHHH-HHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence 689999999764111011 1111221 1111 333468999999865443221 1111 1123589999999999
Q ss_pred CCCCcccCCCCCchhh-----------HHHHHHHHHhhhc---CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 247 DKRKKKKNGGKRPEEN-----------LNDFQELIQGFFQ---TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
|+.+...........+ .+.+.+.+...+. ...+++++|+.+++|+++++..+.+.+.
T Consensus 167 Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 167 DLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp GGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 9987220000000000 1223333333322 2238999999999999999999988764
No 306
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.8e-10 Score=109.44 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-----------------------cee------ccCCCCceEEEEEEEeC--C-
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-----------------------LAL------TSKTPGKTQCINHFRIN--D- 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-----------------------~~~------~~~~~~~t~~~~~~~~~--~- 171 (308)
....++++|..++|||||+.+|+..-. ++. .....|.|.++....++ .
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 345899999999999999999976310 000 11123566665444333 2
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhHHHHHHHhccCC-CCEEEEe
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PIDLEYASWLGQNQ-IPMTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~-------~~~~~l~~~~~~~~-~pvivV~ 243 (308)
.++++|+||+.+ |....+.....+|+.++|+|++.+.- .+-.+....+...+ .-+||++
T Consensus 256 ~~tliDaPGhkd-------------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivai 322 (603)
T KOG0458|consen 256 IVTLIDAPGHKD-------------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAI 322 (603)
T ss_pred eEEEecCCCccc-------------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEe
Confidence 699999999653 66666677788889999999985421 12234444444434 4578999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhh-------cCCCCEEEeecCCCCCHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFF-------QTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~vSA~~g~gi~el 294 (308)
||+|+++- .++..+++...+..++ ...+.|++||+.+|+|+...
T Consensus 323 NKmD~V~W-------sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 323 NKMDLVSW-------SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ecccccCc-------cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99999974 3445555555555443 23468999999999998654
No 307
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.17 E-value=7.1e-11 Score=97.28 Aligned_cols=56 Identities=32% Similarity=0.541 Sum_probs=49.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
..+|+++|.||||||||+|+|.+.+. ..+++.+|+|+....+..+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV-CKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc-eeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 45799999999999999999999754 678899999998887777778999999995
No 308
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.16 E-value=2.8e-10 Score=101.86 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=45.0
Q ss_pred CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 236 QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 236 ~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..+-++|+||+|+.+. ...+++.+.+.++... ...+++++||++|+|++++++||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~-------~~~dle~~~~~lr~ln-p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPY-------LNFDVEKCIACAREVN-PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcc-------cHHHHHHHHHHHHhhC-CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4677999999999753 2334666666665543 35899999999999999999999874
No 309
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.16 E-value=4.4e-10 Score=96.28 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=54.2
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCC
Q 021750 209 VSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTN 288 (308)
Q Consensus 209 ~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g 288 (308)
+.++.|+|+.+....... ........-++++||+|+.+.. ...++.+.+.++.. ....+++++||++|
T Consensus 114 ~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~~~~-------~~~~~~~~~~~~~~-~~~~~i~~~Sa~~g 181 (199)
T TIGR00101 114 DLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLAPMV-------GADLGVMERDAKKM-RGEKPFIFTNLKTK 181 (199)
T ss_pred CcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhccccc-------cccHHHHHHHHHHh-CCCCCEEEEECCCC
Confidence 348999999865543221 1111123348999999998531 12244444444443 33589999999999
Q ss_pred CCHHHHHHHHHHHH
Q 021750 289 QGRDEILLHMAQLR 302 (308)
Q Consensus 289 ~gi~el~~~i~~~~ 302 (308)
+|+++++++|.+.+
T Consensus 182 ~gi~el~~~i~~~~ 195 (199)
T TIGR00101 182 EGLDTVIDWIEHYA 195 (199)
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999998754
No 310
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.15 E-value=9.3e-11 Score=98.07 Aligned_cols=58 Identities=36% Similarity=0.525 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
.+..+++++|.||||||||+|+|.+.+. ..++..||+|+....+..+.++.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 3346999999999999999999999754 578899999998888888889999999995
No 311
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.14 E-value=3.3e-10 Score=90.40 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=100.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|++..|||||+-.+.++++......+.|....-..+.+.+ .+.+||..|.. ++..++.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~----------~~~n~lP-- 87 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQR----------EFINMLP-- 87 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcH----------hhhccCc--
Confidence 35999999999999999999999865444555556554444444544 58899999853 2222222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
..+.+..++++++|.+++.+... +..|... .-+| |+|++|.|+.-.-.. ..++.+..-...+.+.
T Consensus 88 -iac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~---e~Q~~I~~qar~YAk~-- 158 (205)
T KOG1673|consen 88 -IACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPP---ELQETISRQARKYAKV-- 158 (205)
T ss_pred -eeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccce-EEeccchHhhhcCCH---HHHHHHHHHHHHHHHH--
Confidence 33445567999999998766544 3555543 2345 678999996532210 0122222222222222
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...+.|+||+....|++++|..+...
T Consensus 159 mnAsL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 159 MNASLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred hCCcEEEeeccccccHHHHHHHHHHH
Confidence 23789999999999999999886543
No 312
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.12 E-value=9e-10 Score=91.32 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=44.3
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhccCCCCEEEEeecC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQNQIPMTLVFTKC 246 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~~~~pvivV~NK~ 246 (308)
.+.++||||+....... ..++.+|+ ..+|++++|+++.......+. .+.+........+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~------~~~~~~~~---~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEH------TEITEEYL---PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTT------SHHHHHHH---STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhh------HHHHHHhh---ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 58999999986532211 13677776 344679999999987765554 34444555566699999995
No 313
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.10 E-value=1e-10 Score=109.03 Aligned_cols=123 Identities=22% Similarity=0.263 Sum_probs=81.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc----ceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKK----LALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++.++|.+|||||||+|+|++... ...++..||+|.....+..++.+.++||||+.....-.. .+..-...+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~~~~~---~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSHQMAH---YLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChhHhhh---hcCHHHHhh
Confidence 3899999999999999999998532 346888999999988888877889999999975321111 110011112
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+.....+..+.+.+|..............++......+.+.++|.+..+.
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHR 281 (360)
T ss_pred cCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEe
Confidence 23334445578888876544333322233444445667888888877654
No 314
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.07 E-value=2.7e-10 Score=104.56 Aligned_cols=59 Identities=41% Similarity=0.619 Sum_probs=54.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
.+++++|.||||||||||+|.+... +.++..||+|.....+..+..+.++||||+.+..
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~ 191 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPK 191 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCCeEEecCCCcCCCC
Confidence 5899999999999999999999865 7899999999999999999999999999998754
No 315
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.07 E-value=2.3e-10 Score=98.85 Aligned_cols=159 Identities=23% Similarity=0.228 Sum_probs=102.6
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceE--EEEEEEeCC-CEEEecCCCcccC-CCchhhhhchH
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ--CINHFRIND-SWYLVDLPGYGYA-AAPRELRTDWD 195 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~--~~~~~~~~~-~~~liDtpG~~~~-~~~~~~~~~~~ 195 (308)
..+-+..+++++|.|.+||||++..|.+.. ..+....++|. ......+++ ++.+.|.||++++ ..+.+.+.
T Consensus 54 V~ktg~a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~--- 128 (358)
T KOG1487|consen 54 VAKTGDARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGK--- 128 (358)
T ss_pred ceeecceeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCcc---
Confidence 345566799999999999999999999863 22333344433 234444555 8999999999884 33344222
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChh--------------------------------------HHHHHH-Hhc---
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPI--------------------------------------DLEYAS-WLG--- 233 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~--------------------------------------~~~l~~-~~~--- 233 (308)
+.+..++.+.++++|+|+-.+.+.. +.++.+ .+.
T Consensus 129 ----qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR 204 (358)
T KOG1487|consen 129 ----QVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYR 204 (358)
T ss_pred ----EEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhh
Confidence 3334445556788999986653211 000000 000
Q ss_pred ----------------------c--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCC
Q 021750 234 ----------------------Q--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQ 289 (308)
Q Consensus 234 ----------------------~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~ 289 (308)
. ..+|.+.++||+|-..-++ ++- .......+++||-+++
T Consensus 205 ~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEE---------Ldi--------i~~iphavpISA~~~w 267 (358)
T KOG1487|consen 205 IHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEE---------LDI--------IYTIPHAVPISAHTGW 267 (358)
T ss_pred hcchheeeecCcchhhhhhhhccCceeeeeeeeecccceeeeec---------cce--------eeeccceeeccccccc
Confidence 0 2578999999999775221 111 1123778999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 021750 290 GRDEILLHMAQLRNY 304 (308)
Q Consensus 290 gi~el~~~i~~~~~~ 304 (308)
|++++++.+.+.++-
T Consensus 268 n~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 268 NFDKLLEKMWEYLKL 282 (358)
T ss_pred chHHHHHHHhhcchh
Confidence 999999999887654
No 316
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.1e-09 Score=104.32 Aligned_cols=166 Identities=21% Similarity=0.310 Sum_probs=108.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEe------------------CC-CEEEecCCCccc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRI------------------ND-SWYLVDLPGYGY 183 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~------------------~~-~~~liDtpG~~~ 183 (308)
-|-++|+|....|||-|+..+.+.+. .-....|+|..+. .+.. .- .+.+|||||..
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNV--qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE- 551 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNV--QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE- 551 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcccc--ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch-
Confidence 35699999999999999999987542 1222233333221 1111 11 37899999953
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCC-------
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGG------- 256 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~------- 256 (308)
.|. -++. +....+++.|+|+|..+++..+..+-+.++...+.|+||.+||+|....-....
T Consensus 552 ---------sFt-nlRs--rgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~ 619 (1064)
T KOG1144|consen 552 ---------SFT-NLRS--RGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEA 619 (1064)
T ss_pred ---------hhh-hhhh--ccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHH
Confidence 222 2223 444556779999999999888888888888889999999999999764321100
Q ss_pred --CCchhhHHHHHHHHHhh-------------------hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 257 --KRPEENLNDFQELIQGF-------------------FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 257 --~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
........+|..++... .+..+.++++||.+|+||.+|+-+|.++....
T Consensus 620 lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 620 LKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 01112223333333211 12347889999999999999999999876543
No 317
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.3e-09 Score=98.87 Aligned_cols=127 Identities=25% Similarity=0.390 Sum_probs=95.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-cc--e-----------e------ccCCCC--ceEEEEEEEeCC-CEEEecCCCcc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK-KL--A-----------L------TSKTPG--KTQCINHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~-~~--~-----------~------~~~~~~--~t~~~~~~~~~~-~~~liDtpG~~ 182 (308)
...+||-.|.+|||||...|+--- .+ + . .....| .|..+-.+.+++ .+.++||||+.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 468999999999999999987410 00 0 0 011122 333455666666 68999999975
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhh
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEEN 262 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~ 262 (308)
+ |....|+...++|.+++|+|+..+...+..++.+.+...++|++-.+||+|..... +-+.
T Consensus 93 D-------------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rd------P~EL 153 (528)
T COG4108 93 D-------------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRD------PLEL 153 (528)
T ss_pred c-------------cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCC------hHHH
Confidence 3 44566677777788999999999999999899999999999999999999987654 5667
Q ss_pred HHHHHHHHH
Q 021750 263 LNDFQELIQ 271 (308)
Q Consensus 263 ~~~~~~~~~ 271 (308)
+.++.+.++
T Consensus 154 LdEiE~~L~ 162 (528)
T COG4108 154 LDEIEEELG 162 (528)
T ss_pred HHHHHHHhC
Confidence 777777765
No 318
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.02 E-value=8.7e-09 Score=91.79 Aligned_cols=162 Identities=21% Similarity=0.241 Sum_probs=98.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-----CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-----SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.|.++|..++||||||.+|-+.+ .+.+..|..+....+..+. ++.+|-.-|-.+ ...+++..
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~----------h~~LLk~a 120 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLY----------HKGLLKFA 120 (473)
T ss_pred eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchh----------hhhHHhhc
Confidence 89999999999999999998864 2334444444333332221 455554444110 11133332
Q ss_pred HHhcCCc-cEEEEEEeCCCCCChhHHHHHHHhc--------------------------------c--------------
Q 021750 202 FLNRSTL-VSVFLLIDASIPAKPIDLEYASWLG--------------------------------Q-------------- 234 (308)
Q Consensus 202 ~~~~~~~-~~vl~viD~~~~~~~~~~~l~~~~~--------------------------------~-------------- 234 (308)
+....-. -+|++++|.+.++...+. +.+|.. .
T Consensus 121 l~ats~aetlviltasms~Pw~~les-LqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~ 199 (473)
T KOG3905|consen 121 LPATSLAETLVILTASMSNPWTLLES-LQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTV 199 (473)
T ss_pred ccccCccceEEEEEEecCCcHHHHHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccccc
Confidence 2222111 258889999988643321 111111 0
Q ss_pred ---------------------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-hcCCCCEEEeecCCCCCHH
Q 021750 235 ---------------------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-FQTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 235 ---------------------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vSA~~g~gi~ 292 (308)
.++|++||++|||....-+...+..++....++..++++ +..+...|++|+++..|++
T Consensus 200 ~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNid 279 (473)
T KOG3905|consen 200 VGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNID 279 (473)
T ss_pred ccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchH
Confidence 579999999999985433322223455566666666554 2345789999999999999
Q ss_pred HHHHHHHHHH
Q 021750 293 EILLHMAQLR 302 (308)
Q Consensus 293 el~~~i~~~~ 302 (308)
-|..+|....
T Consensus 280 llyKYivhr~ 289 (473)
T KOG3905|consen 280 LLYKYIVHRS 289 (473)
T ss_pred HHHHHHHHHh
Confidence 9999987643
No 319
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.99 E-value=2.8e-09 Score=87.58 Aligned_cols=95 Identities=15% Similarity=0.243 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 194 WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 194 ~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
|++++++.+..+ |++++|+|++.+....+.++..++...++|+++|+||+|+.... ..+.+..... .
T Consensus 2 ~~~~~~~i~~~a---D~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---------~~~~~~~~~~-~ 68 (156)
T cd01859 2 WKRLVRRIIKES---DVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKE---------VLEKWKSIKE-S 68 (156)
T ss_pred HHHHHHHHHhhC---CEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH---------HHHHHHHHHH-h
Confidence 455777766544 45899999988766555566666666689999999999986421 1222221111 1
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
...+++++||+++.|++++++.+.+.+.
T Consensus 69 --~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 69 --EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred --CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 2367999999999999999999988764
No 320
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.98 E-value=1.6e-09 Score=98.00 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=53.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
...+++++|.||||||||+|+|.+.+. ..++..||+|+....+..+..+.++||||+....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc-cccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 345899999999999999999999754 5678899999998888888899999999997643
No 321
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=9.3e-09 Score=102.44 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCc-c---eecc------------CCCCceEE--EEEEEeC--CCEEEecCCCc
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKK-L---ALTS------------KTPGKTQC--INHFRIN--DSWYLVDLPGY 181 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~-~---~~~~------------~~~~~t~~--~~~~~~~--~~~~liDtpG~ 181 (308)
.....+|+|+|+..+|||||..+|+.... + ..+. ...|.|.. ...+.+. ..+.++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 45567999999999999999999986321 0 0111 11244443 2344444 48999999998
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
.+ |..+..+....+|+++.|+|+..+...+...+.+.+...++|.++++||+|....+
T Consensus 87 VD-------------Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VD-------------FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cc-------------cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccC
Confidence 75 44444455556677999999999988888888888888999999999999988654
No 322
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=9.8e-09 Score=90.39 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=95.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC---C------cceecc-----CCCCceEEEEEEEe---CCCEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR---K------KLALTS-----KTPGKTQCINHFRI---NDSWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~---~------~~~~~~-----~~~~~t~~~~~~~~---~~~~~liDtpG~~~~~~~~ 188 (308)
.+|+.+|.-+-|||||..+|+.. . .+.... ...|.|....++.+ ++.+-.+|+||..+
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD----- 87 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 87 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-----
Confidence 48999999999999999999762 1 011112 22367776555554 23788999999642
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
..+..+..+..+|..++|+.++++...+..+...+....+.| +++.+||+|+.+..+ ..+..-.++.
T Consensus 88 --------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~e----llelVemEvr 155 (394)
T COG0050 88 --------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEE----LLELVEMEVR 155 (394)
T ss_pred --------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHH----HHHHHHHHHH
Confidence 566666777778889999999988766665555555566776 567889999997443 1112222333
Q ss_pred HHHHhh-hc-CCCCEEEeecCC
Q 021750 268 ELIQGF-FQ-TAPPWIMTSSVT 287 (308)
Q Consensus 268 ~~~~~~-~~-~~~~~~~vSA~~ 287 (308)
+.+..+ |+ ...|++.-||+.
T Consensus 156 eLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 156 ELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHHHHcCCCCCCcceeechhhh
Confidence 444333 22 457888888764
No 323
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.96 E-value=2.3e-08 Score=90.89 Aligned_cols=139 Identities=21% Similarity=0.345 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceec---cC-----CCCceEEEEEEEe--CC---CEEEecCCCcccCCCchh--
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALT---SK-----TPGKTQCINHFRI--ND---SWYLVDLPGYGYAAAPRE-- 189 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~---~~-----~~~~t~~~~~~~~--~~---~~~liDtpG~~~~~~~~~-- 189 (308)
.+.|+++|.+|.|||||+|.|++....... .. .+++........+ ++ +++++||||+++.-....
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 479999999999999999999996321111 11 1112122211222 23 689999999987433222
Q ss_pred --hhhchHHHHHHHHHh-----------cCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCC
Q 021750 190 --LRTDWDKFTKDYFLN-----------RSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNG 255 (308)
Q Consensus 190 --~~~~~~~~~~~~~~~-----------~~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~ 255 (308)
+..-+.....+|+.. -..+++|+|.+-++ ++.+..+.+.++.+.. .+.+|-|+-|+|...
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT----- 176 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLT----- 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCC-----
Confidence 111112222333322 12346899999875 5678888777666653 577888999999884
Q ss_pred CCCchhhHHHHHHHHHhh
Q 021750 256 GKRPEENLNDFQELIQGF 273 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~ 273 (308)
.+++..+.+.+.+.
T Consensus 177 ----~~El~~~K~~I~~~ 190 (373)
T COG5019 177 ----DDELAEFKERIRED 190 (373)
T ss_pred ----HHHHHHHHHHHHHH
Confidence 34456666555543
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.95 E-value=1.2e-09 Score=92.72 Aligned_cols=56 Identities=36% Similarity=0.562 Sum_probs=47.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc-------ceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKK-------LALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~-------~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
..++++|.+|||||||+|+|.+... ...++..||+|+....+..+..+.++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 4799999999999999999998542 1356788899999888888778999999995
No 325
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.93 E-value=3.6e-09 Score=88.31 Aligned_cols=80 Identities=19% Similarity=0.098 Sum_probs=52.8
Q ss_pred EEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCC
Q 021750 210 SVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQ 289 (308)
Q Consensus 210 ~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~ 289 (308)
.-++|+|.+.+.....+-.-. ..+.-++|+||.|+.+.-. ..++.+.+..++. ....+++++|+++|+
T Consensus 120 ~~v~VidvteGe~~P~K~gP~----i~~aDllVInK~DLa~~v~-------~dlevm~~da~~~-np~~~ii~~n~ktg~ 187 (202)
T COG0378 120 LRVVVIDVTEGEDIPRKGGPG----IFKADLLVINKTDLAPYVG-------ADLEVMARDAKEV-NPEAPIIFTNLKTGE 187 (202)
T ss_pred eEEEEEECCCCCCCcccCCCc----eeEeeEEEEehHHhHHHhC-------ccHHHHHHHHHHh-CCCCCEEEEeCCCCc
Confidence 467888888765443320000 1124589999999987643 2244444444332 245899999999999
Q ss_pred CHHHHHHHHHHH
Q 021750 290 GRDEILLHMAQL 301 (308)
Q Consensus 290 gi~el~~~i~~~ 301 (308)
|++++++|+...
T Consensus 188 G~~~~~~~i~~~ 199 (202)
T COG0378 188 GLDEWLRFIEPQ 199 (202)
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 326
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.93 E-value=2.7e-09 Score=96.06 Aligned_cols=60 Identities=33% Similarity=0.484 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
..+++++|.||||||||+|+|.+... ..++..||+|+....+..+..+.++||||+....
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKV-AKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPK 177 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeecceEEEEeCCCEEEEECCCcccCC
Confidence 35899999999999999999998754 5678899999988888887889999999996543
No 327
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.92 E-value=2.9e-09 Score=87.52 Aligned_cols=57 Identities=30% Similarity=0.518 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
...+++++|.||+|||||+|+|.+... ..++..+++|+....+..+..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLK-LKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccc-ccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 456899999999999999999999754 347778899998877777778999999995
No 328
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.89 E-value=2.2e-09 Score=100.81 Aligned_cols=59 Identities=42% Similarity=0.585 Sum_probs=53.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
..|++||.|||||||+||+|.|.++ .-++.+||.|+..+++.+...+.+.|+||+...+
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~Kk-VsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKK-VSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPS 373 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCce-eeeecCCCCcceeEEEEcCCCceecCCCCccccC
Confidence 5899999999999999999999976 4589999999999999999999999999997643
No 329
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.4e-09 Score=95.93 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=108.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCccee-------------------------ccCCCCceEE-------------
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLAL-------------------------TSKTPGKTQC------------- 163 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~-------------------------~~~~~~~t~~------------- 163 (308)
+....+|+-+|...-||||++.++++-.-..+ .-+.|++-+.
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 45567999999999999999999987421110 0011111100
Q ss_pred ---EEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC----CChhHHHHHHHhccCC
Q 021750 164 ---INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP----AKPIDLEYASWLGQNQ 236 (308)
Q Consensus 164 ---~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~----~~~~~~~l~~~~~~~~ 236 (308)
...+..-+++.++|+||..- ++...+..+..+|.+++++.++.+ .+.+++...+.+. -
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDi-------------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--L 179 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDI-------------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--L 179 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHH-------------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--h
Confidence 01122223477899999642 344444555566778888877643 3334433333443 3
Q ss_pred CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 237 ~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+.++++-||+|+..+.+ ..++.+++++.+......+.|++++||.-++|++-+.++|.+.+
T Consensus 180 khiiilQNKiDli~e~~-----A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQ-----ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred ceEEEEechhhhhhHHH-----HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 67899999999997654 56777788888877777789999999999999999999998754
No 330
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.3e-07 Score=86.61 Aligned_cols=139 Identities=24% Similarity=0.352 Sum_probs=85.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCccee-----ccCCCCceEEE----EEEEeCC---CEEEecCCCcccCCCchh---
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLAL-----TSKTPGKTQCI----NHFRIND---SWYLVDLPGYGYAAAPRE--- 189 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~-----~~~~~~~t~~~----~~~~~~~---~~~liDtpG~~~~~~~~~--- 189 (308)
.+.+.++|.+|.|||||||.|+....... ....+..|..+ ..+.-++ +++++||||+++.-....
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 47999999999999999999998643221 11112112221 1222233 689999999987433222
Q ss_pred -hhhchHHHHHHHHHhc----------CCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCC
Q 021750 190 -LRTDWDKFTKDYFLNR----------STLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGK 257 (308)
Q Consensus 190 -~~~~~~~~~~~~~~~~----------~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~ 257 (308)
+..-...-..+|+..- ..+++|+|.+.++ ++....|.++++-+.. .+.+|-|+-|.|....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~------ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTK------ 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCH------
Confidence 1111222333444321 1346899999886 4578888776666653 6788889999998854
Q ss_pred CchhhHHHHHHHHHhh
Q 021750 258 RPEENLNDFQELIQGF 273 (308)
Q Consensus 258 ~~~~~~~~~~~~~~~~ 273 (308)
+++..+.+.+.+.
T Consensus 174 ---~El~~~K~~I~~~ 186 (366)
T KOG2655|consen 174 ---DELNQFKKRIRQD 186 (366)
T ss_pred ---HHHHHHHHHHHHH
Confidence 3455665555443
No 331
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.87 E-value=1.9e-08 Score=90.20 Aligned_cols=85 Identities=26% Similarity=0.294 Sum_probs=61.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe----------------CC----CEEEecCCCccc-
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI----------------ND----SWYLVDLPGYGY- 183 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~----------------~~----~~~liDtpG~~~- 183 (308)
-++++|||.||||||||.|+|++.. .....+|.+|.+.+.-.+ .+ .+.++|++|+..
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~--a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSK--AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCC--CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3599999999999999999999975 336777777776543221 11 388999999987
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
++.+++++..| + ...+.+|.++.|+++.
T Consensus 98 As~G~GLGN~F---L----s~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKF---L----SHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHH---H----HhhhhccceeEEEEec
Confidence 47788877653 3 3334456688888874
No 332
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.86 E-value=7.7e-09 Score=86.40 Aligned_cols=56 Identities=39% Similarity=0.557 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
.++++++|.+|+|||||+|++.+..+ ..+...+++|+....+..+..+.++||||+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKV-AKVGNKPGVTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence 35899999999999999999999765 467888899998887777778999999996
No 333
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.86 E-value=2.3e-08 Score=84.91 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH--Hh
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI--QG 272 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~ 272 (308)
..++..++. .++++++|+|++++......++ +....++|+++|+||+|+..... ..+..+.+.+.. ..
T Consensus 25 ~~~l~~~~~---~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 25 LNLLSSISP---KKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDK-----NLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHhccc---CCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCC-----CHHHHHHHHHHHHHhh
Confidence 344544433 3456999999987654444333 22235789999999999975322 223333333111 11
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
......+++++||++|+|+++++++|.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 1111236899999999999999999988653
No 334
>PRK13796 GTPase YqeH; Provisional
Probab=98.81 E-value=6.6e-09 Score=97.10 Aligned_cols=58 Identities=33% Similarity=0.501 Sum_probs=49.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC----cceeccCCCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK----KLALTSKTPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.++.++|.+|||||||||+|++.. ....++..||+|.....+.+++...++||||+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence 379999999999999999999642 2345789999999988888877789999999964
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.81 E-value=2.8e-08 Score=81.77 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=63.3
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
....+|++++|+|++.+....+..+.+++.. .++|+++|+||+|+.+. +.+..+.+.+.+.+. ..++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~---------~~~~~~~~~~~~~~~--~~~~ 73 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT---------WVTARWVKILSKEYP--TIAF 73 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH---------HHHHHHHHHHhcCCc--EEEE
Confidence 3445678999999998765555555666543 35899999999999742 224445555544322 2258
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||+.+.|++++++++.+..+
T Consensus 74 ~iSa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 74 HASINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred EeeccccccHHHHHHHHHHHHh
Confidence 8999999999999999987654
No 336
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.80 E-value=9.1e-08 Score=91.60 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=47.9
Q ss_pred CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 236 QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 236 ~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++|++||++|+|....-+......++.++.++..++.+ +..+...|++|++...+++-|+++|...+
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 58999999999987543322222345555666666543 23468899999999999999999977654
No 337
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.80 E-value=5.2e-08 Score=79.98 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=60.1
Q ss_pred cEEEEEEeCCCCCChhHHHHH-HHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCC
Q 021750 209 VSVFLLIDASIPAKPIDLEYA-SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVT 287 (308)
Q Consensus 209 ~~vl~viD~~~~~~~~~~~l~-~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 287 (308)
|++++|+|+..+....+..+. .++...++|+++|+||+|+... +....+...+.... ..+++.+||++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~---------~~~~~~~~~~~~~~--~~~ii~vSa~~ 69 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK---------EVLRKWLAYLRHSY--PTIPFKISATN 69 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH---------HHHHHHHHHHHhhC--CceEEEEeccC
Confidence 568999999887766555544 4556678999999999999642 22333333333221 35689999999
Q ss_pred CCCHHHHHHHHHHHH
Q 021750 288 NQGRDEILLHMAQLR 302 (308)
Q Consensus 288 g~gi~el~~~i~~~~ 302 (308)
|.|++++++.+.+..
T Consensus 70 ~~gi~~L~~~i~~~~ 84 (155)
T cd01849 70 GQGIEKKESAFTKQT 84 (155)
T ss_pred CcChhhHHHHHHHHh
Confidence 999999999987654
No 338
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.77 E-value=2.5e-08 Score=81.90 Aligned_cols=56 Identities=41% Similarity=0.575 Sum_probs=46.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
..+++++|.+|+|||||+|++.+.. ...+.+.+|+|.....+..+..+.+|||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 4589999999999999999999864 3556788888877666666678999999995
No 339
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1.2e-07 Score=81.40 Aligned_cols=124 Identities=19% Similarity=0.385 Sum_probs=73.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCccee------ccCCCCceEE-E-E-EEEeCC---CEEEecCCCcccCCCchh----
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLAL------TSKTPGKTQC-I-N-HFRIND---SWYLVDLPGYGYAAAPRE---- 189 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~------~~~~~~~t~~-~-~-~~~~~~---~~~liDtpG~~~~~~~~~---- 189 (308)
|+|++||.+|.|||||+|.++....... ..+.|.++.- . . .+..++ +++++||||+++.-....
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 5999999999999999999987542211 1133333321 1 1 122233 689999999986432211
Q ss_pred ----hhhchHHHHHHHHH---h----cCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 190 ----LRTDWDKFTKDYFL---N----RSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 190 ----~~~~~~~~~~~~~~---~----~~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+++++..++++-+. . -..+++|+|.+.++ ......+.++++.+.+ -..++-|+-|.|...
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeeccccc
Confidence 22233333332221 1 12345788888876 4466677776666653 356777889999764
No 340
>PRK12288 GTPase RsgA; Reviewed
Probab=98.73 E-value=3e-08 Score=91.80 Aligned_cols=56 Identities=30% Similarity=0.405 Sum_probs=43.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-------CceEEEEEEEeCCCEEEecCCCccc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-------GKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
-++|+|.||||||||||+|++... ..+...+ .||+....+.+.+...++||||+.+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~-~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE-ILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc-eeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCc
Confidence 489999999999999999998753 2233333 3677777777766667999999976
No 341
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2e-07 Score=90.46 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=64.5
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.+.++|.||+.-+.... .... ..+-.+|++++|+.+.+-.+..+.++.....+.+..++|+.||||....
T Consensus 207 DivliDsPGld~~se~t-------swid---~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELT-------SWID---SFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhh-------HHHH---HHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEEechhhhhcc
Confidence 58899999986533211 1222 2333567799999998888888877777776665667888899998765
Q ss_pred ccCCCCCchhhHHHHHHHHHhhh-----cCCCCEEEeecCC
Q 021750 252 KKNGGKRPEENLNDFQELIQGFF-----QTAPPWIMTSSVT 287 (308)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vSA~~ 287 (308)
+ .+..+.+.+++.+.- .....+|+|||+.
T Consensus 277 e-------~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 277 E-------PECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred c-------HHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 3 344555555543221 1235789999653
No 342
>PRK12289 GTPase RsgA; Reviewed
Probab=98.72 E-value=2.5e-08 Score=92.38 Aligned_cols=57 Identities=32% Similarity=0.496 Sum_probs=45.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-------ceEEEEEEEeCCCEEEecCCCcccC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-------KTQCINHFRINDSWYLVDLPGYGYA 184 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~liDtpG~~~~ 184 (308)
.++|+|.||||||||||+|++... ..+...++ ||+....+...+...++||||+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~-~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE-LRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc-cccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence 489999999999999999998653 33455555 7787777777655689999999763
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=1.5e-07 Score=78.52 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+.+.+.......+|++++|+|++.+....+..+...+ .++|+++|+||+|+... +....+.+.+...
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~---------~~~~~~~~~~~~~-- 74 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP---------KKTKKWLKYFESK-- 74 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh---------HHHHHHHHHHHhc--
Confidence 3445555566677889999999877665544444444 35899999999999642 1122333333321
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
...++.+||+++.|++++.+.+.+.+
T Consensus 75 -~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 -GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred -CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 24689999999999999999998875
No 344
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.71 E-value=7.8e-07 Score=77.62 Aligned_cols=144 Identities=17% Similarity=0.109 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC--CcceeccCCCCceEEEEEEEe------CCCEEEecCCCcccCCCch-hhhhch
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR--KKLALTSKTPGKTQCINHFRI------NDSWYLVDLPGYGYAAAPR-ELRTDW 194 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~--~~~~~~~~~~~~t~~~~~~~~------~~~~~liDtpG~~~~~~~~-~~~~~~ 194 (308)
...-|+++|.+++|||+|+|.|++. .+ ........+|+.+..+.. +..++++||||+....... .. +
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~--~- 81 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFED--D- 81 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhh--h-
Confidence 3457999999999999999999998 43 444455666665433322 2379999999987543322 10 0
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHH--HHHHH------------hccCCCCEEEEeecCCCCCcccCC-----
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASW------------LGQNQIPMTLVFTKCDKRKKKKNG----- 255 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~------------~~~~~~pvivV~NK~Dl~~~~~~~----- 255 (308)
.. .+....-..++++|.++........+. .+.+. .......++.|+..+++....+..
T Consensus 82 --~~-~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~~~~~~~ 158 (224)
T cd01851 82 --AR-LFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLDTPLENLDITEG 158 (224)
T ss_pred --hH-HHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCCccccccccccc
Confidence 11 111111123457788777643222211 11110 111334467777777764333221
Q ss_pred CCCchhhHHHHHHHHHhhh
Q 021750 256 GKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~ 274 (308)
.....+..+++.+.+...+
T Consensus 159 ~~~~~~~~~~ir~~l~~~f 177 (224)
T cd01851 159 RETLIEDLNKIWSSIRKPF 177 (224)
T ss_pred cchhHHHHHHHHHHHHhhc
Confidence 1224455666677776665
No 345
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.71 E-value=1.8e-07 Score=84.18 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 194 WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 194 ~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
+.+.+++.......+|++++|+|+..+.+..+..+.+++. ++|+++|+||+|+.+. +..+.+.+.+..
T Consensus 8 m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~---------~~~~~~~~~~~~- 75 (276)
T TIGR03596 8 MAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADP---------AVTKQWLKYFEE- 75 (276)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCH---------HHHHHHHHHHHH-
Confidence 3445556666667778899999998887766655666553 6899999999998642 123344444432
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+++.+||+++.|+++|.+.+.+.+..
T Consensus 76 --~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 --KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred --cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12578999999999999999999887754
No 346
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.3e-07 Score=88.19 Aligned_cols=138 Identities=23% Similarity=0.229 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-ceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-KTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..+-|+++|+||+||||||..|++.-.-.......| .|.... -.++++++.+|. . +..++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg---K~RRiTflEcp~------------D----l~~mi 128 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG---KTRRITFLECPS------------D----LHQMI 128 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec---ceeEEEEEeChH------------H----HHHHH
Confidence 345678999999999999999998521111222222 221110 123789999985 1 22333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHHHHHH----hhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ----GFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 277 (308)
.-+..+|+|++++|++-+.....++++.++...+.| ++-|++..|+.... ..+....+.+. .....+
T Consensus 129 DvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~--------stLr~~KKrlkhRfWtEiyqG 200 (1077)
T COG5192 129 DVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNP--------STLRSIKKRLKHRFWTEIYQG 200 (1077)
T ss_pred hHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccCh--------HHHHHHHHHHhhhHHHHHcCC
Confidence 445556789999999988887888888888888888 56699999998743 34555544433 333356
Q ss_pred CCEEEeecCCC
Q 021750 278 PPWIMTSSVTN 288 (308)
Q Consensus 278 ~~~~~vSA~~g 288 (308)
..+|.+|...+
T Consensus 201 aKlFylsgV~n 211 (1077)
T COG5192 201 AKLFYLSGVEN 211 (1077)
T ss_pred ceEEEeccccc
Confidence 88999987754
No 347
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.64 E-value=2.8e-08 Score=81.57 Aligned_cols=57 Identities=35% Similarity=0.507 Sum_probs=38.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce--eccC----CCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLA--LTSK----TPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~--~~~~----~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.++++|.+|||||||+|+|.+..... .++. -..||+....+.......++||||+..
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRS 99 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCc
Confidence 79999999999999999999974221 1222 224555666777777889999999865
No 348
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.63 E-value=1.8e-07 Score=75.61 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=55.1
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccC--CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQN--QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~--~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
.....+|++++|+|+..+....+..+.+++... ++|+++|+||+|+... +....+.+.+... ...+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~---------~~~~~~~~~~~~~---~~~i 74 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE---------EQRKAWAEYFKKE---GIVV 74 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH---------HHHHHHHHHHHhc---CCeE
Confidence 444556779999999988877776777777654 8999999999998642 2234444444432 2579
Q ss_pred EEeecCCCCC
Q 021750 281 IMTSSVTNQG 290 (308)
Q Consensus 281 ~~vSA~~g~g 290 (308)
+++||+++.+
T Consensus 75 i~iSa~~~~~ 84 (141)
T cd01857 75 VFFSALKENA 84 (141)
T ss_pred EEEEecCCCc
Confidence 9999998764
No 349
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.61 E-value=1.1e-07 Score=83.98 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=60.9
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHH-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDL-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
++..+.+.++.+. |.+++|+|+.++. +.... .+..++...++|+++|+||+||.+... ...++.+.+
T Consensus 25 R~~~L~r~~~~n~---D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~--------~~~~~~~~~ 93 (245)
T TIGR00157 25 RKNELTRPIVANI---DQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDED--------MEKEQLDIY 93 (245)
T ss_pred ccceEECcccccC---CEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHH--------HHHHHHHHH
Confidence 3444555554444 4589999998766 44332 222333347899999999999975321 111223333
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.. .+.+++++||++|+|++++++.+.+
T Consensus 94 ~~---~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 94 RN---IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HH---CCCeEEEEecCCchhHHHHHhhhcC
Confidence 32 2468999999999999999988753
No 350
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.61 E-value=6.9e-08 Score=85.37 Aligned_cols=56 Identities=30% Similarity=0.377 Sum_probs=41.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce--eccC----CCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLA--LTSK----TPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~--~~~~----~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.++++|.+|||||||+|+|.+..... .++. -..||+....+.. ....++||||+.+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccc
Confidence 78999999999999999999864321 1222 2347777777776 3458999999976
No 351
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=7.9e-07 Score=80.78 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=78.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEE---------------------------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFR--------------------------------- 168 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~--------------------------------- 168 (308)
...|-|.++|.-..||||+|+.|+..++.. .+.+.|.+.+.+....
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 455679999999999999999999976532 2333343332211110
Q ss_pred ---------eCCCEEEecCCCcccCCCc-hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccCCC
Q 021750 169 ---------INDSWYLVDLPGYGYAAAP-RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQNQI 237 (308)
Q Consensus 169 ---------~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~~~~ 237 (308)
+-.++.++||||+...... ...+-.|...+ +|+..+. |.+++++|+..-. +..-.+++..+....-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~-~WFaeR~--D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVL-EWFAERV--DRIILLFDAHKLDISDEFKRVIDALKGHED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHH-HHHHHhc--cEEEEEechhhccccHHHHHHHHHhhCCcc
Confidence 0114889999999753211 11122343333 4555544 5599999997543 3333455666666667
Q ss_pred CEEEEeecCCCCCc
Q 021750 238 PMTLVFTKCDKRKK 251 (308)
Q Consensus 238 pvivV~NK~Dl~~~ 251 (308)
.+-||+||.|.++.
T Consensus 213 kiRVVLNKADqVdt 226 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT 226 (532)
T ss_pred eeEEEeccccccCH
Confidence 78899999999874
No 352
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.60 E-value=4.9e-07 Score=81.89 Aligned_cols=97 Identities=20% Similarity=0.188 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.+.+++.......+|++++|+|+..+.+..+..+...+. ++|+++|+||+|+.+. ...+.+.+.+.+.
T Consensus 12 ~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~---------~~~~~~~~~~~~~- 79 (287)
T PRK09563 12 AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP---------EVTKKWIEYFEEQ- 79 (287)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH---------HHHHHHHHHHHHc-
Confidence 345555556667778899999998887766555555554 6999999999998642 2233444444321
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++.+||+++.|++++.+.+.+.+...
T Consensus 80 --~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 80 --GIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred --CCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 35789999999999999999998887543
No 353
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.58 E-value=2.2e-08 Score=91.33 Aligned_cols=63 Identities=29% Similarity=0.534 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA 186 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~ 186 (308)
...+.|++||.||+||||+||.|-..+ ++.+.+.||.|.....+..-.++.++|+||+.+.+.
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~Kk-VCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKK-VCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcc-cccccCCCCcchHHHHHHHHhceeEecCCCccCCCC
Confidence 345689999999999999999998764 588999999998777777778999999999987654
No 354
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=2.7e-07 Score=89.09 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceec---------c------CCCCceEEEE--EEEe---CC---CEEEecCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALT---------S------KTPGKTQCIN--HFRI---ND---SWYLVDLPG 180 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~---------~------~~~~~t~~~~--~~~~---~~---~~~liDtpG 180 (308)
.+.+|+++|.-..|||+|+..|.......+. + ...|++.... .+-. ++ -+.++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 3459999999999999999999875422110 0 0112222211 1111 11 378999999
Q ss_pred cccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
+.. |..+........|++++|+|+..+.......+++...+.+.|+++|+||+|..
T Consensus 207 HVn-------------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVN-------------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred ccc-------------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 763 33333344445677999999999988887778888888899999999999965
No 355
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.56 E-value=2.7e-07 Score=84.12 Aligned_cols=162 Identities=19% Similarity=0.178 Sum_probs=98.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce----------ec--cCCCCceEE----EEEEEe-------------------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA----------LT--SKTPGKTQC----INHFRI------------------- 169 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~----------~~--~~~~~~t~~----~~~~~~------------------- 169 (308)
...|+..|.-+.|||||+-.|....... .. .-..|.+.+ +.-|..
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence 3489999999999999999887643100 00 000111111 111110
Q ss_pred ---CCCEEEecCCCcccCCCchhhhhchHHHHHHHHH--hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEee
Q 021750 170 ---NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL--NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFT 244 (308)
Q Consensus 170 ---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~N 244 (308)
++-+.++||.|.. .| ++..++ -....|..++++-++++.+....+.+..+...+.|+|+|++
T Consensus 197 ~~aDklVsfVDtvGHE----------pw---LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvT 263 (527)
T COG5258 197 KRADKLVSFVDTVGHE----------PW---LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVT 263 (527)
T ss_pred hhcccEEEEEecCCcc----------HH---HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEE
Confidence 1126789998853 32 222222 23345779999999999888777777777777899999999
Q ss_pred cCCCCCcccCCCCCchhhHHHHHHHHHhh------------------hcC-CCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 245 KCDKRKKKKNGGKRPEENLNDFQELIQGF------------------FQT-APPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 245 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
|+|+..+.... -..+++..+.+..+.. .+. ..|+|.+|+.+|+|++-|.+.+..+
T Consensus 264 K~D~~~ddr~~--~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 264 KIDMVPDDRFQ--GVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred ecccCcHHHHH--HHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 99998754310 0122222332222210 111 3799999999999998776665543
No 356
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.55 E-value=2.4e-07 Score=79.08 Aligned_cols=113 Identities=20% Similarity=0.283 Sum_probs=75.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--CC--CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--ND--SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||.++|.+|+||||+=..+..+ ..+.....+|-|.++.+-.. -+ -+.+||+.|... ++..|
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~-------------fmen~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE-------------FMENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH-------------HHHHH
Confidence 48999999999999987777654 34666777888777654333 22 467899988421 45555
Q ss_pred HH-hc----CCccEEEEEEeCCCCCChhHHHHHH-----Hhc-cCCCCEEEEeecCCCCCcc
Q 021750 202 FL-NR----STLVSVFLLIDASIPAKPIDLEYAS-----WLG-QNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 202 ~~-~~----~~~~~vl~viD~~~~~~~~~~~l~~-----~~~-~~~~pvivV~NK~Dl~~~~ 252 (308)
+. .. +..+++++|+|++..+-..|....+ ++. .....+++.+.|+|+....
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 44 11 2235799999998765444432211 111 2566789999999998754
No 357
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.4e-06 Score=78.39 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=96.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-------Cc--ceecc-----CCCCceEEEEEEEeC---CCEEEecCCCcccCCCc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-------KK--LALTS-----KTPGKTQCINHFRIN---DSWYLVDLPGYGYAAAP 187 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-------~~--~~~~~-----~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~ 187 (308)
-.+|+-+|.-.-|||||..+++.- ++ +.... ...|.|....++.+. +++-=+|+||..+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD---- 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD---- 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH----
Confidence 348999999999999999999761 11 11122 233777776666663 3688899999642
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhH-HH
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENL-ND 265 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~-~~ 265 (308)
+.+..+..+...|+.++|+.++++...+..+.+-+....+++ +++.+||.|+.++.+ ..+-+ -+
T Consensus 130 ---------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e-----~leLVEmE 195 (449)
T KOG0460|consen 130 ---------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPE-----MLELVEME 195 (449)
T ss_pred ---------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHH-----HHHHHHHH
Confidence 677777888888999999999998777766655555555655 667789999996432 11111 12
Q ss_pred HHHHHHhh--hcCCCCEEEeecC
Q 021750 266 FQELIQGF--FQTAPPWIMTSSV 286 (308)
Q Consensus 266 ~~~~~~~~--~~~~~~~~~vSA~ 286 (308)
+++.+.++ -+...|++.=||+
T Consensus 196 ~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 196 IRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHHHHcCCCCCCCCeeecchh
Confidence 23333322 2245899987765
No 358
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.54 E-value=6.6e-07 Score=83.58 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=65.3
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
.|.+++..++... +++++|+|+.+.......++.+.+. ++|+++|+||+|+..... ..+.+..+.+....
T Consensus 52 ~f~~~l~~~~~~~---~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~-----~~~~~~~~l~~~~k 121 (360)
T TIGR03597 52 DFLNLLNSLGDSN---ALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSV-----NLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHhhcccCC---cEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCC-----CHHHHHHHHHHHHH
Confidence 5666666654433 4599999998776555555555543 689999999999975321 23334443322222
Q ss_pred hhcC-CCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 273 FFQT-APPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 273 ~~~~-~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..+. ...++++||++|+|++++++.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2121 1358999999999999999998764
No 359
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.53 E-value=2.1e-07 Score=86.13 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=55.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC------------------CEEEecCCCcccC-
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND------------------SWYLVDLPGYGYA- 184 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~------------------~~~liDtpG~~~~- 184 (308)
.+++|+|.||+|||||.|+|++... ......|.+|... ..+.+.+ .+.++|.||+..+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~-~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLG-NEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCc-cccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 4899999999999999999999752 1344445554432 2222211 4789999999874
Q ss_pred CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
+.+.+++.+ |+ .....+|++++|+|+.
T Consensus 82 s~g~Glgn~---fL----~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQ---FL----ANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchH---HH----HHHHhCCEEEEEEeCC
Confidence 344454443 33 3344456689999985
No 360
>PRK00098 GTPase RsgA; Reviewed
Probab=98.48 E-value=3.2e-07 Score=83.53 Aligned_cols=56 Identities=30% Similarity=0.458 Sum_probs=41.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-------CceEEEEEEEeCCCEEEecCCCccc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-------GKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.++++|.+|||||||+|+|++... ..+...+ .+|+....+...+...++||||+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence 689999999999999999998643 2222222 3566666666666678999999974
No 361
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=6.4e-07 Score=81.45 Aligned_cols=158 Identities=21% Similarity=0.234 Sum_probs=95.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-----ee-------ccCCCCceEEE-----------EEEEeC------------
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-----AL-------TSKTPGKTQCI-----------NHFRIN------------ 170 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-----~~-------~~~~~~~t~~~-----------~~~~~~------------ 170 (308)
.+++++|...+|||||+..|...+.. +. ..-..|.|..+ +.+.+.
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 49999999999999999988865311 00 00011211111 011110
Q ss_pred -CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 171 -DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 171 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
.-++++|.+|... |.+...+-+...+ -+..++|+.+..+......+.+.++...++|++++++|+|+.
T Consensus 248 SKlvTfiDLAGh~k----------Y~~TTi~gLtgY~-Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAK----------YQKTTIHGLTGYT-PHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLV 316 (591)
T ss_pred cceEEEeecccchh----------hheeeeeecccCC-CceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccc
Confidence 1278999999642 1111111111111 244788999988887766666677777789999999999998
Q ss_pred CcccCCCCCchhhHHHHHHHHHh-----------------------hhcCCCCEEEeecCCCCCHHHHHHHHH
Q 021750 250 KKKKNGGKRPEENLNDFQELIQG-----------------------FFQTAPPWIMTSSVTNQGRDEILLHMA 299 (308)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~vSA~~g~gi~el~~~i~ 299 (308)
+... .+..++++...+.+ ..+...|+|.+|+.+|+|++-+...+.
T Consensus 317 ~~~~-----~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 317 DRQG-----LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred cchh-----HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 7643 23333333333321 122357999999999999987665543
No 362
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.46 E-value=1.1e-07 Score=87.17 Aligned_cols=58 Identities=34% Similarity=0.545 Sum_probs=52.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYA 184 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~ 184 (308)
.+++|+|.|||||||+||+|...+ ...+...||.|+....+..+..+.++|.||+...
T Consensus 253 IrvGViG~PNVGKSSvINsL~~~k-~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 253 IRVGIIGYPNVGKSSVINSLKRRK-ACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPP 310 (435)
T ss_pred eEeeeecCCCCChhHHHHHHHHhc-cccCCCCccchhhhhheeccCCceeccCCceeec
Confidence 489999999999999999999975 4788999999999999999999999999998753
No 363
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.41 E-value=2.4e-07 Score=72.25 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKK 150 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~ 150 (308)
.||+++|..|+|||+|+.++....+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCc
Confidence 3899999999999999999976543
No 364
>PRK12289 GTPase RsgA; Reviewed
Probab=98.40 E-value=1.8e-06 Score=80.10 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=56.1
Q ss_pred CccEEEEEEeCCCCC-ChhH-HHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEee
Q 021750 207 TLVSVFLLIDASIPA-KPID-LEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTS 284 (308)
Q Consensus 207 ~~~~vl~viD~~~~~-~~~~-~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS 284 (308)
.+|.+++|+|..++. .... ..++..+...++|+++|+||+||... +..+.+.+.+.. .+.+++++|
T Consensus 89 NvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~---------~~~~~~~~~~~~---~g~~v~~iS 156 (352)
T PRK12289 89 NADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP---------TEQQQWQDRLQQ---WGYQPLFIS 156 (352)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh---------HHHHHHHHHHHh---cCCeEEEEE
Confidence 456699999998654 2211 12233334468999999999999742 223444444432 246799999
Q ss_pred cCCCCCHHHHHHHHHH
Q 021750 285 SVTNQGRDEILLHMAQ 300 (308)
Q Consensus 285 A~~g~gi~el~~~i~~ 300 (308)
|+++.|+++|++++..
T Consensus 157 A~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 157 VETGIGLEALLEQLRN 172 (352)
T ss_pred cCCCCCHHHHhhhhcc
Confidence 9999999999988764
No 365
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.40 E-value=3.6e-06 Score=89.70 Aligned_cols=125 Identities=23% Similarity=0.287 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceecc-------CCCCceEEEEEEEeCCCEEEecCCCcccCCC--chhhhhch
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTS-------KTPGKTQCINHFRINDSWYLVDLPGYGYAAA--PRELRTDW 194 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~ 194 (308)
..|=.+++|++|+||||+|+.- +-++ +... ...+-|..+..+ +.++.+++||+|..-... ...-...|
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~ww-f~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDWW-FTDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccceE-ecCCEEEEcCCCccccCCCcccccHHHH
Confidence 3456899999999999999987 4333 2111 112233333333 456788999999532211 11112245
Q ss_pred HHHHHHH--HHhcCCccEEEEEEeCCCCCChhHH-------HHHHHhc------cCCCCEEEEeecCCCCCc
Q 021750 195 DKFTKDY--FLNRSTLVSVFLLIDASIPAKPIDL-------EYASWLG------QNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 195 ~~~~~~~--~~~~~~~~~vl~viD~~~~~~~~~~-------~l~~~~~------~~~~pvivV~NK~Dl~~~ 251 (308)
..++... ++.+..+++||+++|..+-...... .+...+. ....||.||+||||+...
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 5555533 2445678899999999765432111 1111111 268999999999998864
No 366
>PRK00098 GTPase RsgA; Reviewed
Probab=98.39 E-value=1.7e-06 Score=78.77 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=57.2
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
+..+|.+++|+|+.++...... .+...+...++|+++|+||+|+.+. .+..+.+.+.+.. .+.++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~--------~~~~~~~~~~~~~---~g~~v~~ 146 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD--------LEEARELLALYRA---IGYDVLE 146 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC--------HHHHHHHHHHHHH---CCCeEEE
Confidence 3556789999999876443321 2333344578999999999999632 1223334333332 2368999
Q ss_pred eecCCCCCHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMA 299 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~ 299 (308)
+||++++|++++++.+.
T Consensus 147 vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 147 LSAKEGEGLDELKPLLA 163 (298)
T ss_pred EeCCCCccHHHHHhhcc
Confidence 99999999999998764
No 367
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.35 E-value=1e-06 Score=78.98 Aligned_cols=125 Identities=24% Similarity=0.279 Sum_probs=71.3
Q ss_pred chHHHHhhcCeEEcCCCCCcCCCchh----hHHHHhCCCe--EEEeecccchhhhhH-----HHhh--------cccCCC
Q 021750 58 PEPHVAISLEKLFVPPETEVSIDDSS----LSTRILKGSN--IVLSKYARDAQVAQA-----EFVK--------SSVRTE 118 (308)
Q Consensus 58 ~~~~~~~~~~~i~v~~gt~~~~~~~~----~~~~~~~~~~--i~~~~~~~~~~~~~~-----~f~~--------s~~~~~ 118 (308)
.+.-++.+.+.++|+.+.....+.+. ++.....|.+ |+++|.+.-...... ..+. .+....
T Consensus 73 ~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~ 152 (301)
T COG1162 73 IRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNG 152 (301)
T ss_pred eCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCc
Confidence 33344445555878777776655443 3334444555 778887653211111 1111 000000
Q ss_pred C-C-----CCCCCCeEEEEcCCCCCHHHHHHHHhcCCc--ceeccC----CCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 119 D-C-----PSDGLPEFALVGRSNVGKSSLLNSLVRRKK--LALTSK----TPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 119 ~-~-----~~~~~~~I~lvG~~~vGKSSLin~l~~~~~--~~~~~~----~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
. . .-.+. -.+++|.+|||||||+|+|..... ...++. -..||+....+...+.-.++||||+.+
T Consensus 153 ~~~~~l~~~l~~~-~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~ 228 (301)
T COG1162 153 DGLEELAELLAGK-ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRS 228 (301)
T ss_pred ccHHHHHHHhcCC-eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCc
Confidence 0 0 01122 689999999999999999998432 112222 235677777888866667899999865
No 368
>PRK13796 GTPase YqeH; Provisional
Probab=98.33 E-value=6.5e-06 Score=77.05 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=58.3
Q ss_pred EEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC-CCCEEEeecCCC
Q 021750 210 SVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT-APPWIMTSSVTN 288 (308)
Q Consensus 210 ~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vSA~~g 288 (308)
+|++|+|+.+.......++.++.. ++|+++|+||+|+..... ..+.++.+.+...+..+. ...++.+||+++
T Consensus 72 lIv~VVD~~D~~~s~~~~L~~~~~--~kpviLViNK~DLl~~~~-----~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g 144 (365)
T PRK13796 72 LVVNVVDIFDFNGSWIPGLHRFVG--NNPVLLVGNKADLLPKSV-----KKNKVKNWLRQEAKELGLRPVDVVLISAQKG 144 (365)
T ss_pred EEEEEEECccCCCchhHHHHHHhC--CCCEEEEEEchhhCCCcc-----CHHHHHHHHHHHHHhcCCCcCcEEEEECCCC
Confidence 699999998766554445555443 689999999999975321 233444443333222221 136899999999
Q ss_pred CCHHHHHHHHHHH
Q 021750 289 QGRDEILLHMAQL 301 (308)
Q Consensus 289 ~gi~el~~~i~~~ 301 (308)
.|++++++.|.+.
T Consensus 145 ~gI~eL~~~I~~~ 157 (365)
T PRK13796 145 HGIDELLEAIEKY 157 (365)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999765
No 369
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.32 E-value=2e-05 Score=75.06 Aligned_cols=131 Identities=22% Similarity=0.337 Sum_probs=82.3
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCccee------------ccC-------------------------------
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLAL------------TSK------------------------------- 156 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~------------~~~------------------------------- 156 (308)
...+..|+|++||...+||||.+..+......+. ++.
T Consensus 303 nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 303 NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence 3457789999999999999999999976531110 000
Q ss_pred ---------CCCceEEE--EEEEeCC----CEEEecCCCcccC---CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 157 ---------TPGKTQCI--NHFRIND----SWYLVDLPGYGYA---AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 157 ---------~~~~t~~~--~~~~~~~----~~~liDtpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
..|.|... ....+.+ +++++|.||++.. ....+....+..+.++|+.+-.++ ++++-|.+
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAI--ILCIQDGS 460 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAI--ILCIQDGS 460 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeE--EEEeccCC
Confidence 11233322 2223333 6999999999752 112233445667888888776663 44444555
Q ss_pred CC-CChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 219 IP-AKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 219 ~~-~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
-. ....-..+...+...++..|+|++|.|+.+..
T Consensus 461 VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447|consen 461 VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN 495 (980)
T ss_pred cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhc
Confidence 32 11222345555666889999999999998754
No 370
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.32 E-value=1.9e-06 Score=78.06 Aligned_cols=58 Identities=34% Similarity=0.457 Sum_probs=42.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcce--ecc----CCCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLA--LTS----KTPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~--~~~----~~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
..++++|.+|||||||+|+|++..... .++ ...++|.....+...+...++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 379999999999999999999864321 111 2234666666777765668999999954
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.31 E-value=1.5e-05 Score=73.16 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=79.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC-----cceecc-CC---------------CCceEEEEE---------E-------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK-----KLALTS-KT---------------PGKTQCINH---------F------- 167 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~-----~~~~~~-~~---------------~~~t~~~~~---------~------- 167 (308)
..-|+++|++|+||||++..|...- .+.... +. .+....... +
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999999887621 111111 11 111111000 0
Q ss_pred EeCCCEEEecCCCcccCCCchhhhhchHHHHHHHH-HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecC
Q 021750 168 RINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF-LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKC 246 (308)
Q Consensus 168 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~ 246 (308)
.-+..++++||||..... ..+-.++..+.+-.- ......+.+++|+|++.+..... +...+.. .-.+.-+|+||.
T Consensus 194 ~~~~D~ViIDTaGr~~~~--~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~-~~~~~giIlTKl 269 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNK--TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHE-AVGLTGIILTKL 269 (318)
T ss_pred hCCCCEEEEeCCCCCcCC--HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHh-hCCCCEEEEECC
Confidence 011269999999964321 111112222221100 01123355899999996544333 2222222 123457899999
Q ss_pred CCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHH
Q 021750 247 DKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLH 297 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~ 297 (308)
|...... .+-.+.... ..|+.+++ +|++++++...
T Consensus 270 D~t~~~G--------~~l~~~~~~------~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 270 DGTAKGG--------VVFAIADEL------GIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred CCCCCcc--------HHHHHHHHH------CCCEEEEe--CCCChhhCccC
Confidence 9553211 122222222 37899998 78888877543
No 372
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=5.9e-06 Score=81.22 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=75.6
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC---------------CCCceEEEEEEEe--CC-CEEEecCCCcc
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK---------------TPGKTQCINHFRI--ND-SWYLVDLPGYG 182 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~--~~-~~~liDtpG~~ 182 (308)
...+..+|+++..-.-|||||...|+..+. -+.+. +.|.|.....+.. .+ .+.++|+||+.
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asng-vis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNG-VISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhcc-EechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 456677999999999999999999987642 11111 2244443222222 22 68999999987
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCC
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl 248 (308)
+ |.+......+- .|..+.++|+..+...+...+.+..-..+...++|+||+|.
T Consensus 84 d----------f~sevssas~l---~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 D----------FSSEVSSASRL---SDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred c----------hhhhhhhhhhh---cCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 4 22222222233 34578899999988887777777333346788999999993
No 373
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.30 E-value=2.3e-06 Score=76.37 Aligned_cols=63 Identities=38% Similarity=0.536 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC----CcceeccCCCCceEEEEE-EEeCC--CEEEecCCCcccCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRR----KKLALTSKTPGKTQCINH-FRIND--SWYLVDLPGYGYAA 185 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~----~~~~~~~~~~~~t~~~~~-~~~~~--~~~liDtpG~~~~~ 185 (308)
.....+.++|-||+|||||||++... ...+.+...||.|+.+.. +.+.. .++++||||+.-+.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 34569999999999999999998762 244678899999998744 55533 69999999997653
No 374
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.29 E-value=7.1e-06 Score=74.83 Aligned_cols=155 Identities=21% Similarity=0.256 Sum_probs=94.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-----e-------eccCCCCceEE------------------------EEEEEe
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-----A-------LTSKTPGKTQC------------------------INHFRI 169 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-----~-------~~~~~~~~t~~------------------------~~~~~~ 169 (308)
.+|+++|...+|||||+..|+..+.. + ......|.|.. ..+..+
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 49999999999999999888764310 0 00001111110 011111
Q ss_pred CC----CEEEecCCCcccCCCchhhhhchHHHHHHHH--HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEe
Q 021750 170 ND----SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF--LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVF 243 (308)
Q Consensus 170 ~~----~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~ 243 (308)
.. -++++|.+|... .++... .....-|..++++-++.+.--...+.+.+.....+|+++|+
T Consensus 214 ce~saKviTFIDLAGHEk-------------YLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVV 280 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEK-------------YLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVV 280 (641)
T ss_pred ccccceeEEEEeccchhh-------------hhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEE
Confidence 11 378899988531 111111 12223356888998887654444444555555689999999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhh---------------------hc--CCCCEEEeecCCCCCHHHHHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGF---------------------FQ--TAPPWIMTSSVTNQGRDEILLHM 298 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~--~~~~~~~vSA~~g~gi~el~~~i 298 (308)
+|+|+...+ +.++.++.+.+.++.. |. ..+|+|.+|..+|+|++-|..++
T Consensus 281 TKIDMCPAN-----iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 281 TKIDMCPAN-----ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred EeeccCcHH-----HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 999998755 2556666666665531 11 24899999999999998665554
No 375
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.25 E-value=2.3e-05 Score=75.27 Aligned_cols=158 Identities=22% Similarity=0.272 Sum_probs=92.8
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHH
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
......+..-++|..|+|||.|+++++++...............++.+...+ .+++-|.+-. . +.
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~----~~------- 487 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-D----QD------- 487 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-c----cc-------
Confidence 3445567899999999999999999999753221111111111222222222 3455555322 1 00
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
++.. .+ ..+|++++++|.+.+.++... .+..+......|+++|+.|+|+.+..+.. .-...+++..++
T Consensus 488 ~l~~--ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~----~iqpde~~~~~~--- 557 (625)
T KOG1707|consen 488 FLTS--KE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRY----SIQPDEFCRQLG--- 557 (625)
T ss_pred cccC--cc-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhcc----CCChHHHHHhcC---
Confidence 1111 11 456789999999977665543 12223334789999999999998765432 122256666654
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+.+.+|.++... .++|..|....
T Consensus 558 --i~~P~~~S~~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 558 --LPPPIHISSKTLSS-NELFIKLATMA 582 (625)
T ss_pred --CCCCeeeccCCCCC-chHHHHHHHhh
Confidence 24566677775333 77887776653
No 376
>PRK12288 GTPase RsgA; Reviewed
Probab=98.23 E-value=9e-06 Score=75.42 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=55.9
Q ss_pred CccEEEEEEeCCCCCChhHH-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeec
Q 021750 207 TLVSVFLLIDASIPAKPIDL-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA 285 (308)
.+|.+++|++.....+.... .++..+...++|+++|+||+|+....+ .+....+.+.+.. .+.+++++||
T Consensus 120 NvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~------~~~~~~~~~~y~~---~g~~v~~vSA 190 (347)
T PRK12288 120 NIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEG------RAFVNEQLDIYRN---IGYRVLMVSS 190 (347)
T ss_pred EccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHH------HHHHHHHHHHHHh---CCCeEEEEeC
Confidence 35678888887644443322 222234457899999999999975321 1223333333322 2468999999
Q ss_pred CCCCCHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQ 300 (308)
Q Consensus 286 ~~g~gi~el~~~i~~ 300 (308)
++++|+++|+++|..
T Consensus 191 ~tg~GideL~~~L~~ 205 (347)
T PRK12288 191 HTGEGLEELEAALTG 205 (347)
T ss_pred CCCcCHHHHHHHHhh
Confidence 999999999998864
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.21 E-value=5.7e-05 Score=67.81 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=78.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCC----------------CCceEEEE-------E--E-------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKT----------------PGKTQCIN-------H--F------- 167 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~----------------~~~t~~~~-------~--~------- 167 (308)
...|+++|.+|+||||++..|... ..+...+-. .+...... . +
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 347899999999999988888641 111111111 11111000 0 0
Q ss_pred EeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHH--hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeec
Q 021750 168 RINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL--NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTK 245 (308)
Q Consensus 168 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK 245 (308)
.-+..++++||||..... ..+..++..+.+. .. .....+.+++|+|++.+..... ....+.... .+.-+|+||
T Consensus 152 ~~~~D~ViIDT~G~~~~d--~~~~~el~~~~~~-~~~~~~~~~~~~~LVl~a~~~~~~~~-~~~~f~~~~-~~~g~IlTK 226 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNK--VNLMDELKKIKRV-IKKVDKDAPDEVLLVLDATTGQNALE-QAKVFNEAV-GLTGIILTK 226 (272)
T ss_pred HCCCCEEEEeCCCCCcch--HHHHHHHHHHHHH-HhcccCCCCceEEEEEECCCCHHHHH-HHHHHHhhC-CCCEEEEEc
Confidence 012378999999965321 1111122222211 11 0122456899999985432222 222222222 346789999
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHH
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLH 297 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~ 297 (308)
+|...... .+-.+.... ..|+.+++ +|++++++..+
T Consensus 227 lDe~~~~G--------~~l~~~~~~------~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 227 LDGTAKGG--------IILSIAYEL------KLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred cCCCCCcc--------HHHHHHHHH------CcCEEEEe--CCCChHhCccC
Confidence 99765321 122222222 37888888 78888877544
No 378
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.19 E-value=4.8e-05 Score=72.09 Aligned_cols=116 Identities=16% Similarity=0.057 Sum_probs=63.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc-----CCcceeccCC----------------CCceEEEEEE--E--------------
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR-----RKKLALTSKT----------------PGKTQCINHF--R-------------- 168 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~-----~~~~~~~~~~----------------~~~t~~~~~~--~-------------- 168 (308)
.-|+++|.+||||||++..|.. +..+..++.. .+........ .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999873 1122222111 1111111000 0
Q ss_pred eCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCC
Q 021750 169 INDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248 (308)
Q Consensus 169 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl 248 (308)
.+..++++||||... ....+ ..-+..+. .....+.+++|+|+..+....+ ....+.+.-.+--+|+||.|-
T Consensus 181 ~~~DvViIDTaGr~~--~d~~l----m~El~~i~-~~~~p~e~lLVlda~~Gq~a~~--~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 181 ENFDIIIVDTSGRHK--QEDSL----FEEMLQVA-EAIQPDNIIFVMDGSIGQAAEA--QAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred CCCCEEEEECCCCCc--chHHH----HHHHHHHh-hhcCCcEEEEEeccccChhHHH--HHHHHHhccCCcEEEEECccC
Confidence 023789999999532 11111 11222222 2223456899999987654432 234443333467789999997
Q ss_pred CC
Q 021750 249 RK 250 (308)
Q Consensus 249 ~~ 250 (308)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 64
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=98.18 E-value=1.7e-05 Score=73.04 Aligned_cols=101 Identities=19% Similarity=0.139 Sum_probs=55.4
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.++++||+|..... ..+.. -++...... ..+.+++|+|+..+.... +....+...-..--+|+||.|....
T Consensus 224 DvVLIDTaGr~~~~--~~lm~----eL~~i~~~~-~pd~~iLVl~a~~g~d~~--~~a~~f~~~~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 224 DVVLIDTAGRMHTD--ANLMD----ELKKIVRVT-KPDLVIFVGDALAGNDAV--EQAREFNEAVGIDGVILTKVDADAK 294 (336)
T ss_pred CEEEEECCCccCCc--HHHHH----HHHHHHHhh-CCceEEEeeccccchhHH--HHHHHHHhcCCCCEEEEeeecCCCC
Confidence 68999999965311 12111 122222222 235588999997654322 2233332222345678999998653
Q ss_pred ccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHH
Q 021750 252 KKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLH 297 (308)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~ 297 (308)
.. . +-.+.... ..|+.+++ +|++++++..+
T Consensus 295 ~G-------~-~ls~~~~~------~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 295 GG-------A-ALSIAYVI------GKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred cc-------H-HHHHHHHH------CcCEEEEe--CCCChhhcccC
Confidence 21 1 11222222 37888888 79999887644
No 380
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.16 E-value=7.6e-06 Score=74.11 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=55.4
Q ss_pred CCccEEEEEEeCCCCC-ChhHH-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 206 STLVSVFLLIDASIPA-KPIDL-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~-~~~~~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
..+|.+++|+|+..+. +.... .+...+...++|+++|+||+|+.+.. + ...+...... .+.+++++
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~--------~-~~~~~~~~~~---~g~~v~~v 144 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE--------E-EELELVEALA---LGYPVLAV 144 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH--------H-HHHHHHHHHh---CCCeEEEE
Confidence 3457799999998876 43322 22333345789999999999997531 1 1111222211 24689999
Q ss_pred ecCCCCCHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~ 300 (308)
||+++.|+++|+.+|..
T Consensus 145 SA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 145 SAKTGEGLDELREYLKG 161 (287)
T ss_pred ECCCCccHHHHHhhhcc
Confidence 99999999999988753
No 381
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.10 E-value=3.9e-05 Score=63.23 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++++|..|+|||||++.++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999875
No 382
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.07 E-value=3.9e-05 Score=64.45 Aligned_cols=128 Identities=15% Similarity=0.207 Sum_probs=66.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc----CCcceeccCCCC-c----------eEEEEEEE---------------------eC
Q 021750 127 EFALVGRSNVGKSSLLNSLVR----RKKLALTSKTPG-K----------TQCINHFR---------------------IN 170 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~----~~~~~~~~~~~~-~----------t~~~~~~~---------------------~~ 170 (308)
-+++.|..|+|||||++.++. ..+.+......| . ......+. ..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 478999999999999999993 222222222111 0 00011110 11
Q ss_pred --C-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhH--HHHHHHhccCCCCEEEEeec
Q 021750 171 --D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID--LEYASWLGQNQIPMTLVFTK 245 (308)
Q Consensus 171 --~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~--~~l~~~~~~~~~pvivV~NK 245 (308)
. ...++.+.|......- .+....+...-..+.++.|+|+.......+ ..+...+. ..-++|+||
T Consensus 82 ~~~~d~IiIE~sG~a~p~~l--------~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~---~ADvIvlnK 150 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAPL--------ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA---FADVIVLNK 150 (178)
T ss_dssp HGC-SEEEEEEECSSGGGGH--------HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC---T-SEEEEE-
T ss_pred CCCcCEEEECCccccccchh--------hhccccccccccccceeEEeccccccccccchhhhhhcch---hcCEEEEec
Confidence 2 5788899886532211 011222333344566999999965421111 12333333 334889999
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
+|+.+.. +.++.+.+.+++.
T Consensus 151 ~D~~~~~--------~~i~~~~~~ir~l 170 (178)
T PF02492_consen 151 IDLVSDE--------QKIERVREMIREL 170 (178)
T ss_dssp GGGHHHH----------HHHHHHHHHHH
T ss_pred cccCChh--------hHHHHHHHHHHHH
Confidence 9998632 1245566555544
No 383
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=9.6e-06 Score=78.06 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCc-ce---ec------------cCCCCceEE--EEEEEeCC-CEEEecCCCcc
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKK-LA---LT------------SKTPGKTQC--INHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~-~~---~~------------~~~~~~t~~--~~~~~~~~-~~~liDtpG~~ 182 (308)
.....+|+++-.-.+||||+.++++.... .. .+ ....|+|.. ...+.+.+ ++.++||||+.
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 34566899999999999999999886321 00 00 011233332 23344444 89999999987
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
+.. .+.-+.....|++++|+|+..+...+.....+.+...++|.+..+||+|.....
T Consensus 116 DFT-------------~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 116 DFT-------------FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGAS 172 (721)
T ss_pred eEE-------------EEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCC
Confidence 533 222244445566899999998887777766777777899999999999988754
No 384
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=2e-06 Score=79.25 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=80.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcc----------eec------cCCCCceEEE--EEEEeCC-CEEEecCCCc
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKL----------ALT------SKTPGKTQCI--NHFRIND-SWYLVDLPGY 181 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~----------~~~------~~~~~~t~~~--~~~~~~~-~~~liDtpG~ 181 (308)
+...+.+|+++..-.+||||...+++.-... ..+ ....|.|... ..+.|.+ ++.++||||.
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 3345668999999999999999998752100 011 1123555543 3455555 8999999998
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.+.....+ +.....|+++.|+|++.+...+.....+.....++|-++.+||+|....
T Consensus 113 vdf~leve-------------rclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 113 VDFRLEVE-------------RCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred ceEEEEHH-------------HHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh
Confidence 64322111 2223345589999999988777765556666788999999999998754
No 385
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.00012 Score=68.44 Aligned_cols=117 Identities=22% Similarity=0.259 Sum_probs=62.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC-------cceeccCCC----------------CceEEEEE---------EEe-CCCE
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK-------KLALTSKTP----------------GKTQCINH---------FRI-NDSW 173 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~-------~~~~~~~~~----------------~~t~~~~~---------~~~-~~~~ 173 (308)
.++|+|++||||||++..|.... .+..++... +....... ..+ +..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~Dl 218 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHM 218 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCE
Confidence 79999999999999999997531 111111111 11111000 001 2379
Q ss_pred EEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-------CEEEEeecC
Q 021750 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-------PMTLVFTKC 246 (308)
Q Consensus 174 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~-------pvivV~NK~ 246 (308)
+++||+|..... .. ....+.. +......+-.++|++++.........+..+....++ .-=+|+||.
T Consensus 219 VLIDTaG~~~~d--~~----l~e~La~-L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 219 VLIDTIGMSQRD--RT----VSDQIAM-LHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred EEEcCCCCCccc--HH----HHHHHHH-HhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecc
Confidence 999999965211 11 1112222 122233334789999987655444323333322222 235788999
Q ss_pred CCCC
Q 021750 247 DKRK 250 (308)
Q Consensus 247 Dl~~ 250 (308)
|-..
T Consensus 292 DEt~ 295 (374)
T PRK14722 292 DEAS 295 (374)
T ss_pred ccCC
Confidence 9764
No 386
>PRK01889 GTPase RsgA; Reviewed
Probab=97.94 E-value=7.1e-05 Score=69.86 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=56.1
Q ss_pred CCccEEEEEEeCCCCCChhH-HHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEee
Q 021750 206 STLVSVFLLIDASIPAKPID-LEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTS 284 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~-~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS 284 (308)
..+|.+++|+++........ ..++..+...+++.+||+||+||.+.. .+..+.+... ..+.+++.+|
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~-------~~~~~~~~~~-----~~g~~Vi~vS 178 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDA-------EEKIAEVEAL-----APGVPVLAVS 178 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCH-------HHHHHHHHHh-----CCCCcEEEEE
Confidence 44677999999874444322 234444556788999999999997531 1222233222 2357899999
Q ss_pred cCCCCCHHHHHHHHH
Q 021750 285 SVTNQGRDEILLHMA 299 (308)
Q Consensus 285 A~~g~gi~el~~~i~ 299 (308)
|+++.|+++|..++.
T Consensus 179 a~~g~gl~~L~~~L~ 193 (356)
T PRK01889 179 ALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCCccHHHHHHHhh
Confidence 999999999998874
No 387
>PRK01889 GTPase RsgA; Reviewed
Probab=97.93 E-value=3.1e-05 Score=72.24 Aligned_cols=125 Identities=25% Similarity=0.279 Sum_probs=65.9
Q ss_pred chHHHHhhcCeEEcCCCCCcCCCch---h-hHHHHhCCCe--EEEeecccchhhh--hHHHhhc----------ccCCCC
Q 021750 58 PEPHVAISLEKLFVPPETEVSIDDS---S-LSTRILKGSN--IVLSKYARDAQVA--QAEFVKS----------SVRTED 119 (308)
Q Consensus 58 ~~~~~~~~~~~i~v~~gt~~~~~~~---~-~~~~~~~~~~--i~~~~~~~~~~~~--~~~f~~s----------~~~~~~ 119 (308)
..+.+++|+|.++|+....-..+.. + ++.....+.. |+++|.+...... ...+..- ......
T Consensus 105 ~~q~iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 105 EEQLIAANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEG 184 (356)
T ss_pred cceeEEEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCcc
Confidence 3466789999988877775322221 2 2222233444 6777776532111 1111111 000000
Q ss_pred ------CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcce--ecc----CCCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 120 ------CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLA--LTS----KTPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 120 ------~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~--~~~----~~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
....+ -.++++|.+|+|||||+|.|++..... .+. ....+|.....+.+.....++||||+.+
T Consensus 185 l~~L~~~L~~g-~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 185 LDVLAAWLSGG-KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE 259 (356)
T ss_pred HHHHHHHhhcC-CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence 00112 279999999999999999999854211 111 1112333333444445567889999854
No 388
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.92 E-value=0.00012 Score=67.15 Aligned_cols=149 Identities=18% Similarity=0.187 Sum_probs=83.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC---cceec-cCCCCceEE------------------EEEEE---------------
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK---KLALT-SKTPGKTQC------------------INHFR--------------- 168 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~---~~~~~-~~~~~~t~~------------------~~~~~--------------- 168 (308)
|-.+|-|.=|+|||||+|.++... +++.. ..+-....+ +....
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 456788999999999999999853 22211 110000000 00111
Q ss_pred eCC-CEEEecCCCcccCCCchhhhhchHHHHH-HHHHhcCCccEEEEEEeCCCCCChhH---HHHHHHhccCCCCEEEEe
Q 021750 169 IND-SWYLVDLPGYGYAAAPRELRTDWDKFTK-DYFLNRSTLVSVFLLIDASIPAKPID---LEYASWLGQNQIPMTLVF 243 (308)
Q Consensus 169 ~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vl~viD~~~~~~~~~---~~l~~~~~~~~~pvivV~ 243 (308)
.++ ...++.|.|+.....- ...+.. .-+......+.++-|+|+........ ..+...+. ..-+||+
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv------~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivl 152 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPV------IQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVL 152 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHH------HHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEE
Confidence 011 4778999998653211 111222 23344555678999999987654332 12233333 3348899
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
||.|+.+.. .++.+.+.+++..+ ..+++.+|. .+....++
T Consensus 153 NK~Dlv~~~---------~l~~l~~~l~~lnp-~A~i~~~~~-~~~~~~~l 192 (323)
T COG0523 153 NKTDLVDAE---------ELEALEARLRKLNP-RARIIETSY-GDVDLAEL 192 (323)
T ss_pred ecccCCCHH---------HHHHHHHHHHHhCC-CCeEEEccc-cCCCHHHh
Confidence 999999632 36666666665443 478888887 33344333
No 389
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.92 E-value=0.00014 Score=62.18 Aligned_cols=115 Identities=27% Similarity=0.356 Sum_probs=59.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC-----Ccceecc-C--CC-------------CceEEEEE---------------EEeC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR-----KKLALTS-K--TP-------------GKTQCINH---------------FRIN 170 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~-~--~~-------------~~t~~~~~---------------~~~~ 170 (308)
.|+++|++||||||.+-.|... ..+...+ + .. +....... ...+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 5899999999999999888752 1112111 1 11 11111000 0001
Q ss_pred -CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 171 -DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 171 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
..++++||||... ...+...++ +.++... ..+-+++|+|++......+ .+..+....+. -=++++|.|..
T Consensus 83 ~~D~vlIDT~Gr~~--~d~~~~~el----~~~~~~~-~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~-~~lIlTKlDet 153 (196)
T PF00448_consen 83 GYDLVLIDTAGRSP--RDEELLEEL----KKLLEAL-NPDEVHLVLSATMGQEDLE-QALAFYEAFGI-DGLILTKLDET 153 (196)
T ss_dssp TSSEEEEEE-SSSS--THHHHHHHH----HHHHHHH-SSSEEEEEEEGGGGGHHHH-HHHHHHHHSST-CEEEEESTTSS
T ss_pred CCCEEEEecCCcch--hhHHHHHHH----HHHhhhc-CCccceEEEecccChHHHH-HHHHHhhcccC-ceEEEEeecCC
Confidence 2699999999642 112211222 2333222 2234899999987644333 33344333333 35668999976
Q ss_pred C
Q 021750 250 K 250 (308)
Q Consensus 250 ~ 250 (308)
.
T Consensus 154 ~ 154 (196)
T PF00448_consen 154 A 154 (196)
T ss_dssp S
T ss_pred C
Confidence 4
No 390
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=5.1e-05 Score=66.77 Aligned_cols=126 Identities=20% Similarity=0.324 Sum_probs=73.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCccee--ccCCCCceEEEEEEEeC-----CCEEEecCCCcccCCCchh--------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLAL--TSKTPGKTQCINHFRIN-----DSWYLVDLPGYGYAAAPRE-------- 189 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~--~~~~~~~t~~~~~~~~~-----~~~~liDtpG~~~~~~~~~-------- 189 (308)
.++|..||.+|.|||||+..|.+..+... ....|+.......+... -+++++||.|+++.-...+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 46999999999999999999999764321 12233333333333332 1689999999976322111
Q ss_pred hhhchHHHHHHHH--------HhcCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 190 LRTDWDKFTKDYF--------LNRSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 190 ~~~~~~~~~~~~~--------~~~~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+..+|...+.+-+ ..-..+++|+|.|.++ .+....++-.++.+. ....+|-|+-|.|....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHhhhhhH
Confidence 1112222222111 1223456788888876 344444443333332 35677888899998754
No 391
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.91 E-value=7.7e-05 Score=62.34 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=34.0
Q ss_pred cEEEEEEeCCCCCChhHHHHHHH--hccCCCCEEEEeecCCCCC
Q 021750 209 VSVFLLIDASIPAKPIDLEYASW--LGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 209 ~~vl~viD~~~~~~~~~~~l~~~--~~~~~~pvivV~NK~Dl~~ 250 (308)
|+|++|+|+..+....+.++.+. +...++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 57999999998877666666666 4456799999999999975
No 392
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00041 Score=67.19 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.|+|+|.+|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988875
No 393
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.85 E-value=0.0002 Score=66.47 Aligned_cols=134 Identities=12% Similarity=0.058 Sum_probs=78.8
Q ss_pred CCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC---------hhH--
Q 021750 158 PGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK---------PID-- 225 (308)
Q Consensus 158 ~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~---------~~~-- 225 (308)
|.++.....+.+++ .+.+||.+|.. ..++.|.+|+... ++|+||+|.++... ...
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr----------~~R~kW~~~f~~v---~~IiFvvdlSd~d~~~~Ed~~~nrl~es 236 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQR----------SERKKWIHCFDNV---TAIIFCVALSEYDQVLEEDESTNRMQES 236 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCch----------hhhhhHHHHhCCC---CEEEEEEECcccccchhccCcchHHHHH
Confidence 33444445566665 78999999953 3445777877654 45999999986421 111
Q ss_pred H-HHHHHhc---cCCCCEEEEeecCCCCCcccCCC-----------C-CchhhHHHHHHHHHhhhc----CCCCEEEeec
Q 021750 226 L-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGG-----------K-RPEENLNDFQELIQGFFQ----TAPPWIMTSS 285 (308)
Q Consensus 226 ~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~----~~~~~~~vSA 285 (308)
. .+..++. -.+.|+++++||.|+....-... . ......+.+.+.+..... ..+-++.++|
T Consensus 237 l~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a 316 (342)
T smart00275 237 LNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCA 316 (342)
T ss_pred HHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeee
Confidence 1 1222222 15799999999999865331110 0 011222223333322211 1244567889
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 286 ~~g~gi~el~~~i~~~~~~ 304 (308)
.+-.++..+|+.+.+.+-.
T Consensus 317 ~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 317 TDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 9999999999998887654
No 394
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.84 E-value=0.00023 Score=65.46 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=79.3
Q ss_pred CCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC---------hhH--
Q 021750 158 PGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK---------PID-- 225 (308)
Q Consensus 158 ~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~---------~~~-- 225 (308)
+.++.....+.+++ .+.+||++|.. ..++.|.+|+.. +++|+||+|.++... ...
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~----------~~R~kW~~~f~~---v~~iifvv~lsd~d~~~~e~~~~nrl~es 213 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQR----------SERKKWIHCFED---VTAIIFVVALSEYDQVLFEDESTNRMQES 213 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCc----------ccchhHHHHhCC---CCEEEEEEEchhcccccccCCcchHHHHH
Confidence 33344444555555 79999999953 234477777764 445999999986421 111
Q ss_pred H-HHHHHhcc---CCCCEEEEeecCCCCCcccCC-------------CCCchhhHHHHHHHHHhhhc---CCCCEEEeec
Q 021750 226 L-EYASWLGQ---NQIPMTLVFTKCDKRKKKKNG-------------GKRPEENLNDFQELIQGFFQ---TAPPWIMTSS 285 (308)
Q Consensus 226 ~-~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~vSA 285 (308)
. .+..++.. .++|+++++||.|+....-.. ........+.+.+.+..... ..+-+..++|
T Consensus 214 l~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a 293 (317)
T cd00066 214 LNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCA 293 (317)
T ss_pred HHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccc
Confidence 1 11222221 579999999999976432110 00112222233333322211 2345567899
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 286 ~~g~gi~el~~~i~~~~~~~ 305 (308)
.+-.++..+|+.+.+.+-..
T Consensus 294 ~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 294 TDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 99999999999998877553
No 395
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00011 Score=77.10 Aligned_cols=125 Identities=26% Similarity=0.329 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-e-----eccCCCCceEEEEEEEeCCCEEEecCCCcccCC--Cchhhhhch
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-A-----LTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA--APRELRTDW 194 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-~-----~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~ 194 (308)
.+.|=-++||+||+||||++..- +.+|. . .....+| |+.+. .-+.++-+++||.|--... .+..-+..|
T Consensus 123 yeLPWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-cccccceEEEcCCcceecccCcchhhHHHH
Confidence 44566789999999999987643 22221 1 1122334 44444 3346688999999953322 222222334
Q ss_pred HHH---HHHHHHhcCCccEEEEEEeCCCCCChhHHHH---H----HHhc------cCCCCEEEEeecCCCCCc
Q 021750 195 DKF---TKDYFLNRSTLVSVFLLIDASIPAKPIDLEY---A----SWLG------QNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 195 ~~~---~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l---~----~~~~------~~~~pvivV~NK~Dl~~~ 251 (308)
..+ ++. ++.+..+++|++.+|..+-.+....+. . ..+. ....|+++++||.|+...
T Consensus 200 ~~fL~lLkk-~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 200 LGFLGLLKK-YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHH-hccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 433 222 366677888999999875443222111 1 1111 268999999999999864
No 396
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.82 E-value=0.00035 Score=64.80 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
++-.+|.|.-|+|||||+|+++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 456789999999999999999864
No 397
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.74 E-value=0.00019 Score=60.90 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=68.2
Q ss_pred CCCEEEecCCCcccC--CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHH------HHHhccCCCCEEE
Q 021750 170 NDSWYLVDLPGYGYA--AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEY------ASWLGQNQIPMTL 241 (308)
Q Consensus 170 ~~~~~liDtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l------~~~~~~~~~pviv 241 (308)
++.+.++|+||.++- +.+ -+..+.++.-. ..--..++|++|+.--. ...+.+ +..+.....|.|=
T Consensus 97 eddylifDcPGQIELytH~p-----Vm~~iv~hl~~-~~F~~c~Vylldsqf~v-D~~KfiSG~lsAlsAMi~lE~P~IN 169 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLP-----VMPQIVEHLKQ-WNFNVCVVYLLDSQFLV-DSTKFISGCLSALSAMISLEVPHIN 169 (273)
T ss_pred cCCEEEEeCCCeeEEeecCh-----hHHHHHHHHhc-ccCceeEEEEeccchhh-hHHHHHHHHHHHHHHHHHhcCcchh
Confidence 447999999998762 221 12223333211 11112478888875211 111111 1111235799999
Q ss_pred EeecCCCCCcccCCC----------------CC--chhhHHHHHHHHHhhhcC--CCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 242 VFTKCDKRKKKKNGG----------------KR--PEENLNDFQELIQGFFQT--APPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 242 V~NK~Dl~~~~~~~~----------------~~--~~~~~~~~~~~~~~~~~~--~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
|++|+||.+...... .. ......++.+.+...... -+.+++.-....+.++.++.+|...
T Consensus 170 vlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~a 249 (273)
T KOG1534|consen 170 VLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDA 249 (273)
T ss_pred hhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHH
Confidence 999999987632000 00 000122233333322221 2677888888888888888888776
Q ss_pred HHHH
Q 021750 302 RNYW 305 (308)
Q Consensus 302 ~~~~ 305 (308)
+...
T Consensus 250 iQy~ 253 (273)
T KOG1534|consen 250 IQYG 253 (273)
T ss_pred HHhc
Confidence 6543
No 398
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00025 Score=66.37 Aligned_cols=117 Identities=22% Similarity=0.320 Sum_probs=61.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCC----------------CceEEEE-----------EEEe--C
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTP----------------GKTQCIN-----------HFRI--N 170 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~----------------~~t~~~~-----------~~~~--~ 170 (308)
...|+|+|++||||||++..|... ......+..+ +...... .+.. +
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 458999999999999999999742 1112111111 1111100 0000 1
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
..++++||+|..... .+ .+..+ ..++... ..+.+++|+|++...... .++...+...+ .-=+|++|.|-..
T Consensus 321 ~DvVLIDTaGRs~kd--~~---lm~EL-~~~lk~~-~PdevlLVLsATtk~~d~-~~i~~~F~~~~-idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRA--SE---TVEEM-IETMGQV-EPDYICLTLSASMKSKDM-IEIITNFKDIH-IDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcC--HH---HHHHH-HHHHhhc-CCCeEEEEECCccChHHH-HHHHHHhcCCC-CCEEEEEcccCCC
Confidence 278999999964311 12 11112 2222222 234578999987543322 23344444322 3457889999765
No 399
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00052 Score=65.10 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.|+|+|++||||||++..|.+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998865
No 400
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.65 E-value=0.00073 Score=62.22 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=71.0
Q ss_pred EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCCh--hH---------HHHHHHh
Q 021750 165 NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP--ID---------LEYASWL 232 (308)
Q Consensus 165 ~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~--~~---------~~l~~~~ 232 (308)
..+.+.+ .+.++|.+|.. ..++-|.+.+.. +++|+||++.+.-... .+ +.+.+.+
T Consensus 188 ~~F~~k~~~f~~~DvGGQR----------seRrKWihcFe~---v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI 254 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQR----------SERKKWIHCFED---VTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESI 254 (354)
T ss_pred EEEEeCCCceEEEeCCCcH----------HHhhhHHHhhcC---CCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHH
Confidence 3444444 78999999953 112244455544 4459999998753221 11 1222211
Q ss_pred cc----CCCCEEEEeecCCCCCcccCC-----------CC-CchhhHHHHHHHHHhhhc---CCCCEEEeecCCCCCHHH
Q 021750 233 GQ----NQIPMTLVFTKCDKRKKKKNG-----------GK-RPEENLNDFQELIQGFFQ---TAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 233 ~~----~~~pvivV~NK~Dl~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~---~~~~~~~vSA~~g~gi~e 293 (308)
-. .+.++|+.+||.|+....-.. +. ..++....+...+..... ...-+..+.|.+-.+|+.
T Consensus 255 ~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~ 334 (354)
T KOG0082|consen 255 CNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQF 334 (354)
T ss_pred hcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHH
Confidence 11 578999999999987543210 00 111222222222222211 123345568888899999
Q ss_pred HHHHHHHHHHHH
Q 021750 294 ILLHMAQLRNYW 305 (308)
Q Consensus 294 l~~~i~~~~~~~ 305 (308)
+|+++.+.+.+.
T Consensus 335 vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 335 VFDAVTDTIIQN 346 (354)
T ss_pred HHHHHHHHHHHH
Confidence 999998877653
No 401
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00016 Score=66.77 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------eecc------CCCCceEEE--EEEEeC-C
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL-----------------------ALTS------KTPGKTQCI--NHFRIN-D 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------~~~~------~~~~~t~~~--~~~~~~-~ 171 (308)
...+++++|.-.+||||+-..|.....+ ...- ..-|.|..+ ..+... .
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 3459999999999999988777642100 0000 111233332 233333 3
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCCh-------hHHHHHHHhcc-CCCCEEEEe
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP-------IDLEYASWLGQ-NQIPMTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~-------~~~~l~~~~~~-~~~pvivV~ 243 (308)
++++.|+||.-. +...++..+..+|+-++|+.+..+... +..+...+... .-...|+++
T Consensus 158 ~ftiLDApGHk~-------------fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~v 224 (501)
T KOG0459|consen 158 RFTILDAPGHKS-------------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLI 224 (501)
T ss_pred eEEeeccCcccc-------------cchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEE
Confidence 799999999642 455666677777878888888543211 11121222222 235678999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhhc-------CCCCEEEeecCCCCCHHHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ-------TAPPWIMTSSVTNQGRDEILL 296 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~vSA~~g~gi~el~~ 296 (308)
||+|-+..+= ..+..++..+.+..++. ....++++|..+|.++.+...
T Consensus 225 NKMddPtvnW-----s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 225 NKMDDPTVNW-----SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EeccCCccCc-----chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 9999775331 23333333333332221 447899999999999987653
No 402
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.0015 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..+|++.|+|||||||++.++.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 35999999999999999999885
No 403
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.59 E-value=0.00052 Score=63.18 Aligned_cols=93 Identities=20% Similarity=0.181 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+++++........|+|+.|+|+..+.......+.++... +|.++|+||+|+.+. ...+.|.+.+....
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~--k~~i~vlNK~DL~~~---------~~~~~W~~~~~~~~- 90 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE--KPKLLVLNKADLAPK---------EVTKKWKKYFKKEE- 90 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc--CCcEEEEehhhcCCH---------HHHHHHHHHHHhcC-
Confidence 455666666677788999999999988887777777764 556999999999863 33667777666543
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....+.++++.+.+...+...+..+
T Consensus 91 -~~~~~~v~~~~~~~~~~i~~~~~~~ 115 (322)
T COG1161 91 -GIKPIFVSAKSRQGGKKIRKALEKL 115 (322)
T ss_pred -CCccEEEEeecccCccchHHHHHHH
Confidence 3567889999998888877555433
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.59 E-value=0.00028 Score=57.48 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 021750 128 FALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~ 147 (308)
|+++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998876
No 405
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0011 Score=66.95 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|+|+.||||||++..|.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999999986
No 406
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0033 Score=59.16 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=60.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC---------CcceeccCC----------------CCceEEEEEE---------Ee-
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR---------KKLALTSKT----------------PGKTQCINHF---------RI- 169 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~---------~~~~~~~~~----------------~~~t~~~~~~---------~~- 169 (308)
...|+++|++||||||.+..|... ..+..++-. .+........ ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 347999999999999999888642 111111111 1111111000 01
Q ss_pred CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 170 NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 170 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
+..++++||+|.... ... .+. -+..++.....-.-+++|+|++....... ++...+... .+-=+|+||.|-.
T Consensus 254 ~~DlVLIDTaGr~~~--~~~---~l~-el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~-~~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPK--DFM---KLA-EMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPF-SYKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCcc--CHH---HHH-HHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCC-CCCEEEEEeccCC
Confidence 226999999996421 111 111 12233332222224899999987643333 222222211 2345788999976
Q ss_pred C
Q 021750 250 K 250 (308)
Q Consensus 250 ~ 250 (308)
.
T Consensus 326 ~ 326 (388)
T PRK12723 326 T 326 (388)
T ss_pred C
Confidence 4
No 407
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.50 E-value=0.00076 Score=64.43 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
....|+++|.+|+||||++..|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999988864
No 408
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=97.49 E-value=1.5e-05 Score=65.15 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=32.5
Q ss_pred hhcCe-EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCC
Q 021750 64 ISLEK-LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDG 124 (308)
Q Consensus 64 ~~~~~-i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~ 124 (308)
..-|. |.||+||.+.+.++. +.++..+++++++|+|+.++ .+|..|.++.++.|..+..+
T Consensus 80 ~G~dl~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG-~GN~~f~s~~~~~P~~~~~G 142 (156)
T PF01018_consen 80 NGKDLIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGG-LGNAHFKSSTNRAPRFATPG 142 (156)
T ss_dssp ----EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE---------GGGC-BTTCSS--EEE--
T ss_pred CCCccEeeecCCcEEEeeccccchheeecccceeEEecCCCCc-cccccccCCCCCCCCccCCC
Confidence 33344 999999999985554 55667778899999999986 99999999999888765544
No 409
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.003 Score=60.30 Aligned_cols=117 Identities=23% Similarity=0.259 Sum_probs=59.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC-------CcceeccCCCC----------------ceEEE-EEE--------E-eCCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR-------KKLALTSKTPG----------------KTQCI-NHF--------R-INDS 172 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~-------~~~~~~~~~~~----------------~t~~~-~~~--------~-~~~~ 172 (308)
..++|+|++||||||++..|... ..+..++..+. ..... ... . .+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 37999999999999988777531 12222222111 01100 000 0 1236
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
++++||||..... .... ..+..++.....-+-+++|++++....... ++...+...+ +--+|+||+|-..
T Consensus 302 lVlIDt~G~~~~d--~~~~----~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~-~~~~~f~~~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 302 VILIDTAGRSQRD--KRLI----EELKALIEFSGEPIDVYLVLSATTKYEDLK-DIYKHFSRLP-LDGLIFTKLDETS 371 (424)
T ss_pred EEEEeCCCCCCCC--HHHH----HHHHHHHhccCCCCeEEEEEECCCCHHHHH-HHHHHhCCCC-CCEEEEecccccc
Confidence 8999999974311 1111 122333331111134788899875432222 3333343322 2358899999754
No 410
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.45 E-value=0.00062 Score=62.53 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|-.+|.|.-|+|||||+|+++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3567889999999999999999864
No 411
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.002 Score=62.19 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++||||||++..|..
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999986
No 412
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0011 Score=62.68 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=60.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC------cceeccC----------------CCCceEEEE--------EEE-eCCCEEE
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK------KLALTSK----------------TPGKTQCIN--------HFR-INDSWYL 175 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~------~~~~~~~----------------~~~~t~~~~--------~~~-~~~~~~l 175 (308)
-++++|++||||||++..|.... .+..++- ..+...... .+. .+..+++
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VL 304 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELIL 304 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEE
Confidence 58899999999999999997521 1111111 111111100 000 1237899
Q ss_pred ecCCCcccCCCchhhhhchHHHHHHHHHhc--CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 176 VDLPGYGYAAAPRELRTDWDKFTKDYFLNR--STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 176 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+||||..... ...-..+ ..++... ....-+++|+|++....... ++...+...+ +-=+|++|.|-..
T Consensus 305 IDTaGr~~rd--~~~l~eL----~~~~~~~~~~~~~e~~LVLsAt~~~~~~~-~~~~~f~~~~-~~glIlTKLDEt~ 373 (432)
T PRK12724 305 IDTAGYSHRN--LEQLERM----QSFYSCFGEKDSVENLLVLSSTSSYHHTL-TVLKAYESLN-YRRILLTKLDEAD 373 (432)
T ss_pred EeCCCCCccC--HHHHHHH----HHHHHhhcCCCCCeEEEEEeCCCCHHHHH-HHHHHhcCCC-CCEEEEEcccCCC
Confidence 9999974211 1111122 2222221 11124789999987643332 2333333322 3457889999764
No 413
>PRK13695 putative NTPase; Provisional
Probab=97.42 E-value=0.0062 Score=50.73 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
+|+|+|.+|+|||||+..+.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999765
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=97.41 E-value=0.00084 Score=64.03 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..-|+++|.+|+||||++..|..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999997666653
No 415
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.41 E-value=0.0014 Score=61.39 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceec----------c----CCCCceE----------EEEEEEeCC----CEE
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALT----------S----KTPGKTQ----------CINHFRIND----SWY 174 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~----------~----~~~~~t~----------~~~~~~~~~----~~~ 174 (308)
.|..-|++||+--+||||||.+|...-..+.. . ...|.|. ....+.+++ ++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 56678999999999999999999863111110 0 0112111 112233332 688
Q ss_pred EecCCCcccC-CCchhhh-------hchH----HHHHHHHHh------cCCccEEEEEEeCCCCCC------hhHHHHHH
Q 021750 175 LVDLPGYGYA-AAPRELR-------TDWD----KFTKDYFLN------RSTLVSVFLLIDASIPAK------PIDLEYAS 230 (308)
Q Consensus 175 liDtpG~~~~-~~~~~~~-------~~~~----~~~~~~~~~------~~~~~~vl~viD~~~~~~------~~~~~l~~ 230 (308)
++|+-|+.-. ..+.... ..|. .|....-.. -..-.+++.-.|.+-..- ..+.+...
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 9999997432 2221100 0010 011110000 111236777778774321 11224455
Q ss_pred HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCC
Q 021750 231 WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVT 287 (308)
Q Consensus 231 ~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 287 (308)
.+...++|+++++|-.+=.. +...++++.+.+.+ .++++++++..
T Consensus 175 ELk~igKPFvillNs~~P~s----------~et~~L~~eL~ekY--~vpVlpvnc~~ 219 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKPYS----------EETQELAEELEEKY--DVPVLPVNCEQ 219 (492)
T ss_pred HHHHhCCCEEEEEeCCCCCC----------HHHHHHHHHHHHHh--CCcEEEeehHH
Confidence 66678999999999887432 22445555555443 37888888753
No 416
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.38 E-value=0.00067 Score=63.31 Aligned_cols=117 Identities=26% Similarity=0.291 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC-------cceecc-CC---------------CCceEEEEE----EE------eCC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK-------KLALTS-KT---------------PGKTQCINH----FR------IND 171 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~-------~~~~~~-~~---------------~~~t~~~~~----~~------~~~ 171 (308)
...|+|||++||||||-+-.|.... .+++.+ ++ -+....+.. +. -+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 3479999999999999888776531 122211 11 111111100 00 123
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+++++||.|..... .. ..+-++.|+..... .-+++|++++....... ++...+...+.. =+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D--~~----~i~el~~~~~~~~~-i~~~Lvlsat~K~~dlk-ei~~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYD--KE----KIEELKELIDVSHS-IEVYLVLSATTKYEDLK-EIIKQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccC--HH----HHHHHHHHHhcccc-ceEEEEEecCcchHHHH-HHHHHhccCCcc-eeEEEcccccC
Confidence 79999999964311 11 12234455554433 34789999886433322 334444332222 46789999664
No 417
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.36 E-value=0.0023 Score=53.22 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=37.3
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.++++||||.... ..+ +...+..+ ......+.+++|+|+.......+ ....+....+ ..-+|+||+|....
T Consensus 84 d~viiDt~g~~~~--~~~----~l~~l~~l-~~~~~~~~~~lVv~~~~~~~~~~-~~~~~~~~~~-~~~viltk~D~~~~ 154 (173)
T cd03115 84 DVVIVDTAGRLQI--DEN----LMEELKKI-KRVVKPDEVLLVVDAMTGQDAVN-QAKAFNEALG-ITGVILTKLDGDAR 154 (173)
T ss_pred CEEEEECcccchh--hHH----HHHHHHHH-HhhcCCCeEEEEEECCCChHHHH-HHHHHHhhCC-CCEEEEECCcCCCC
Confidence 5899999996421 111 11111222 11222456899999865433222 2222222333 35678899997754
No 418
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.31 E-value=0.00072 Score=64.74 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=89.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC--C-EEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND--S-WYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~-~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.|++|||..++|||+|+.+++...+...-++.. .+....+..++ + +.+-|-.|.. ..+|.
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~---------------~aQft 93 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP---------------DAQFC 93 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc---------------hhhhh
Confidence 489999999999999999998876543333332 23333333333 2 3444554411 11232
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHH-----HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEY-----ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l-----~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.. +|.+++|+...+..+++..+. ..+.....+|+++++++- ........ .+.+.....+.... ..
T Consensus 94 ~w---vdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd-~iS~~~~r-v~~da~~r~l~~~~-----kr 163 (749)
T KOG0705|consen 94 QW---VDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQD-HISAKRPR-VITDDRARQLSAQM-----KR 163 (749)
T ss_pred hh---ccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcc-hhhccccc-ccchHHHHHHHHhc-----Cc
Confidence 33 334788887776666554322 222234678888888873 33222111 01222222222222 13
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+.+|+.+|.+|-++...|+.++..+...+
T Consensus 164 csy~et~atyGlnv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 164 CSYYETCATYGLNVERVFQEVAQKIVQLR 192 (749)
T ss_pred cceeecchhhhhhHHHHHHHHHHHHHHHH
Confidence 78999999999999999999887765443
No 419
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.29 E-value=0.00037 Score=60.12 Aligned_cols=79 Identities=24% Similarity=0.249 Sum_probs=41.5
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC---CCCChhHHHHHHH--hccCCCCEEEEeec
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS---IPAKPIDLEYASW--LGQNQIPMTLVFTK 245 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~---~~~~~~~~~l~~~--~~~~~~pvivV~NK 245 (308)
+.+.++|+||..+--..+. ...++.+. +...+--.+++-++|+- ++......-+... +-....|-+=|+.|
T Consensus 97 ~~Y~lFDcPGQVELft~h~---~l~~I~~~-Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHD---SLNKIFRK-LEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEeccc---hHHHHHHH-HHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhH
Confidence 4799999999876211111 12223322 22222223467778874 3322222111111 11256888999999
Q ss_pred CCCCCccc
Q 021750 246 CDKRKKKK 253 (308)
Q Consensus 246 ~Dl~~~~~ 253 (308)
+|+...-.
T Consensus 173 ~Dl~~~yg 180 (290)
T KOG1533|consen 173 ADLLKKYG 180 (290)
T ss_pred hHHHHhhc
Confidence 99986543
No 420
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0038 Score=58.30 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
...++++|++||||||++..|..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.26 E-value=0.006 Score=58.23 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..-|+++|.+|+||||++..|..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 34788999999999999665543
No 422
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24 E-value=0.0051 Score=55.11 Aligned_cols=117 Identities=22% Similarity=0.290 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCC----------------CceEEEEE-----------E-Ee-C
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTP----------------GKTQCINH-----------F-RI-N 170 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~----------------~~t~~~~~-----------~-~~-~ 170 (308)
..+++++|.+|+||||++..+... .....++..+ +....... . .. +
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 359999999999999999888653 1111111100 11111000 0 00 1
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
..++++||||..... .+.-.+ + ..++... ..+.+++|+|++....... ++.+.+.. -.+-=+++||.|-..
T Consensus 155 ~D~ViIDt~Gr~~~~--~~~l~e---l-~~~~~~~-~~~~~~LVl~a~~~~~d~~-~~~~~f~~-~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRA--SETVEE---M-IETMGQV-EPDYICLTLSASMKSKDMI-EIITNFKD-IHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCC--HHHHHH---H-HHHHhhh-CCCeEEEEEcCccCHHHHH-HHHHHhCC-CCCCEEEEEeecCCC
Confidence 278999999964211 221112 2 2222222 2234899999875433222 23333333 233457889999765
No 423
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.16 E-value=0.0018 Score=59.88 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+++.......|+|+.|+|+.++......+..+++. ..++..|+|+||+|++ +.+.++.|...++..++
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLV---------PrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 138 KEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLV---------PREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccC---------CHHHHHHHHHHHHhhCC
Confidence 33334455667899999999998877666666663 2348999999999998 56678999999987654
No 424
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.15 E-value=0.0017 Score=61.86 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+|++..+.....|+|+.++|+.++.-+....+..++.+ ..+..++++||.||.. .+....|.+.+.+.
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~---------~~qr~aWa~YF~~~- 233 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLP---------PEQRVAWAEYFRQN- 233 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCC---------HHHHHHHHHHHHhc-
Confidence 56665566666678999999999977666666677764 4577899999999985 34456666666543
Q ss_pred cCCCCEEEeecCC
Q 021750 275 QTAPPWIMTSSVT 287 (308)
Q Consensus 275 ~~~~~~~~vSA~~ 287 (308)
.+++++.||..
T Consensus 234 --ni~~vf~SA~~ 244 (562)
T KOG1424|consen 234 --NIPVVFFSALA 244 (562)
T ss_pred --CceEEEEeccc
Confidence 48999999987
No 425
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.0024 Score=55.43 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=60.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C--CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D--SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.|+|.++|..-+||||+-.....+- .+.-+.....|.....-.+. . .+.+||.||....-.+.- .+. ..
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkM-sPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~---D~e----~i 98 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSF---DYE----MI 98 (347)
T ss_pred CceEEEEeecccCcchhhheeeecc-CCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCcc---CHH----HH
Confidence 3689999999999999766555431 11111111111111000111 1 588999999754221111 111 11
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~ 251 (308)
++. .++ ++||+|+.+.....-..+..... ..++.+=+.+.|.|-...
T Consensus 99 F~~-~gA--LifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 99 FRG-VGA--LIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred Hhc-cCe--EEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 222 333 89999997532221112222221 256778889999997654
No 426
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.96 E-value=0.0078 Score=55.81 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
.++|.+.|...+..|+++-|+|+.++.......+..++.. ..+-+|+|+|||||+.. -....|...+..
T Consensus 201 kRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPt---------wvt~~Wv~~lSk 271 (572)
T KOG2423|consen 201 KRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPT---------WVTAKWVRHLSK 271 (572)
T ss_pred hHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccH---------HHHHHHHHHHhh
Confidence 4588888888899999999999999887666666666653 56789999999999853 334555555554
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+ .-.|..|-....|-..|++.+.++..
T Consensus 272 eyP--TiAfHAsi~nsfGKgalI~llRQf~k 300 (572)
T KOG2423|consen 272 EYP--TIAFHASINNSFGKGALIQLLRQFAK 300 (572)
T ss_pred hCc--ceeeehhhcCccchhHHHHHHHHHHh
Confidence 322 22344555556677767766666543
No 427
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.96 E-value=0.008 Score=48.20 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=52.4
Q ss_pred EEcCCCCCHHHHHHHHhcCC-----cceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 130 LVGRSNVGKSSLLNSLVRRK-----KLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 130 lvG~~~vGKSSLin~l~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
.-|.+|+|||++.-.+...- ........++.. ..+..++++|+|+... ......+..
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~------~~~yd~VIiD~p~~~~------------~~~~~~l~~ 66 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA------NLDYDYIIIDTGAGIS------------DNVLDFFLA 66 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC------CCCCCEEEEECCCCCC------------HHHHHHHHh
Confidence 44789999999877775421 111111111100 0124789999987421 022233333
Q ss_pred cCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCC
Q 021750 205 RSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKR 249 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~ 249 (308)
+ |.++++++.+...-..-....+++.. ...++.+|+|+++..
T Consensus 67 a---D~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 67 A---DEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred C---CeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 3 44888888874322111223333322 345778999999743
No 428
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.95 E-value=0.0043 Score=53.76 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=32.8
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCCC
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDKR 249 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl~ 249 (308)
..+|.++.|+|++...-....++.++..+.+ +++.+|+||+|-.
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4567899999998644344445666777777 9999999999954
No 429
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.94 E-value=0.0035 Score=57.06 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCC-----ccee----------------ccCCCCceEE-------EEEEEe------
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRK-----KLAL----------------TSKTPGKTQC-------INHFRI------ 169 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~-----~~~~----------------~~~~~~~t~~-------~~~~~~------ 169 (308)
.+.-|.++|-.|+||||-|..|...- .... .....|.... ...+-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 35688999999999999998887521 1000 0001111111 000000
Q ss_pred ---CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHh-cCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeec
Q 021750 170 ---NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN-RSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTK 245 (308)
Q Consensus 170 ---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK 245 (308)
+-.++++||+|-. +....+-.++.++.+-.-.. ....+-+++++|++.+...... .+.+.+.-.--=++++|
T Consensus 218 kar~~DvvliDTAGRL--hnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q--Ak~F~eav~l~GiIlTK 293 (340)
T COG0552 218 KARGIDVVLIDTAGRL--HNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ--AKIFNEAVGLDGIILTK 293 (340)
T ss_pred HHcCCCEEEEeCcccc--cCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH--HHHHHHhcCCceEEEEe
Confidence 2269999999943 32233333333333221000 0111237888899987655442 23333211123468899
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHH
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLH 297 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~ 297 (308)
+|-..... .+-.+...++ .|+.++-. |+++++|...
T Consensus 294 lDgtAKGG--------~il~I~~~l~------~PI~fiGv--GE~~~DL~~F 329 (340)
T COG0552 294 LDGTAKGG--------IILSIAYELG------IPIKFIGV--GEGYDDLRPF 329 (340)
T ss_pred cccCCCcc--------eeeeHHHHhC------CCEEEEeC--CCChhhcccc
Confidence 99443221 1223333443 67777754 7888877543
No 430
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.86 E-value=0.0025 Score=42.67 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCCC--hhH-HHHHHHhc-c-CCCCEEEEeecCC
Q 021750 209 VSVFLLIDASIPAK--PID-LEYASWLG-Q-NQIPMTLVFTKCD 247 (308)
Q Consensus 209 ~~vl~viD~~~~~~--~~~-~~l~~~~~-~-~~~pvivV~NK~D 247 (308)
++|+|++|.+.... ..+ ..+.+.+. . .++|+++|+||+|
T Consensus 15 ~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 15 DAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred ceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 35999999986433 222 12223222 2 3899999999998
No 431
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.85 E-value=0.0088 Score=53.94 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=51.8
Q ss_pred EEEEEeCCCCCChhHH--HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCC
Q 021750 211 VFLLIDASIPAKPIDL--EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTN 288 (308)
Q Consensus 211 vl~viD~~~~~~~~~~--~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g 288 (308)
+++|+.+..+.-.... .++-.+...++.-+||+||+||....+ ... +++...+. ..+.+++.+|++++
T Consensus 83 ~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~------~~~-~~~~~~y~---~~gy~v~~~s~~~~ 152 (301)
T COG1162 83 AIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEE------AAV-KELLREYE---DIGYPVLFVSAKNG 152 (301)
T ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchH------HHH-HHHHHHHH---hCCeeEEEecCcCc
Confidence 5666666555332221 334444567888889999999997542 111 23333333 23588999999999
Q ss_pred CCHHHHHHHHHH
Q 021750 289 QGRDEILLHMAQ 300 (308)
Q Consensus 289 ~gi~el~~~i~~ 300 (308)
+|++++.+++..
T Consensus 153 ~~~~~l~~~l~~ 164 (301)
T COG1162 153 DGLEELAELLAG 164 (301)
T ss_pred ccHHHHHHHhcC
Confidence 999999988753
No 432
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.82 E-value=0.0027 Score=56.94 Aligned_cols=159 Identities=16% Similarity=0.223 Sum_probs=74.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
|=|++.|.|++||||+.+.|... + . . .+.. +..+. +..+. ++---+.........+..+.......+ ..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~-~-~--~--~~~~--v~~i~-~~~~~-~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~ 70 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY-L-E--E--KGKE--VVIIS-DDSLG-IDRNDYADSKKEKEARGSLKSAVERAL-SK 70 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH-H-H--H--TT----EEEE--THHHH--TTSSS--GGGHHHHHHHHHHHHHHHH-TT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH-H-H--h--cCCE--EEEEc-ccccc-cchhhhhchhhhHHHHHHHHHHHHHhh-cc
Confidence 45899999999999999999873 1 1 1 1111 11111 00010 111111111111112222222333322 22
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc------CCCCCchhhHHHHHHHHHhh---hcC
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK------NGGKRPEENLNDFQELIQGF---FQT 276 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~ 276 (308)
+ -++++|...-......++.......+.+..+|..++++..... ....+.++.++.+...+..- ..|
T Consensus 71 ~----~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrW 146 (270)
T PF08433_consen 71 D----TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRW 146 (270)
T ss_dssp -----SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GG
T ss_pred C----eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCc
Confidence 2 3567899887877888888888889999999999988643211 11125667777777666432 123
Q ss_pred CCCEEEee-cCCCCCHHHHHHHHH
Q 021750 277 APPWIMTS-SVTNQGRDEILLHMA 299 (308)
Q Consensus 277 ~~~~~~vS-A~~g~gi~el~~~i~ 299 (308)
..|.|.+. .-....++++++.|.
T Consensus 147 D~plf~i~~~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 147 DSPLFTIDSSDEELPLEEIWNALF 170 (270)
T ss_dssp GS-SEEEE-TTS---HHHHHHHHH
T ss_pred cCCeEEEecCCCCCCHHHHHHHHH
Confidence 45677766 566667788887774
No 433
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.80 E-value=0.031 Score=46.24 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=36.8
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-CEEEEeecCCCCC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-PMTLVFTKCDKRK 250 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~-pvivV~NK~Dl~~ 250 (308)
.++++|||+-.. ......+.. +|.++++++++...-..-..+.+++...+. ...+|+|++|...
T Consensus 64 d~viiD~p~~~~------------~~~~~~l~~---ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIE------------RGFITAIAP---ADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCc------------HHHHHHHHh---CCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 799999987321 012222333 344888888875432222244455544333 4678999998653
No 434
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.77 E-value=0.0013 Score=52.80 Aligned_cols=21 Identities=48% Similarity=0.706 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999985
No 435
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.76 E-value=0.0057 Score=54.73 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=23.8
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCC
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
+....|--.+.|.-|+|||||+|.++.++
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~ 81 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTGQ 81 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHccC
Confidence 34456677899999999999999999753
No 436
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.75 E-value=0.0021 Score=64.43 Aligned_cols=127 Identities=26% Similarity=0.299 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcce----eccCCCCc----------------e-EE------------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLA----LTSKTPGK----------------T-QC------------------ 163 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~----~~~~~~~~----------------t-~~------------------ 163 (308)
-..|.|++||..++||||.++.+.+..+.+ +++..|-. . ..
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 446799999999999999999999965432 11111100 0 00
Q ss_pred --------------EEEEEeC----CCEEEecCCCccc---CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC--C
Q 021750 164 --------------INHFRIN----DSWYLVDLPGYGY---AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI--P 220 (308)
Q Consensus 164 --------------~~~~~~~----~~~~liDtpG~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~--~ 220 (308)
.....+. ..++++|+||+.. +..+..+..++..+...|+..-.. +++.+.+.+ -
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~---iILav~~an~d~ 183 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNR---IILAVTPANSDI 183 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccch---hhhhccchhhhh
Confidence 0001111 1478999999965 233444555677777777655444 344444432 1
Q ss_pred CChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 221 AKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 221 ~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
.+.....+.+.....+...+-|++|+|+.+..
T Consensus 184 ats~alkiarevDp~g~RTigvitK~DlmdkG 215 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFMDKG 215 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhhhcC
Confidence 23333455555555677788888888887654
No 437
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.69 E-value=0.0014 Score=50.88 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|.|.|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 438
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0013 Score=57.42 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
=|+|+|++|||||||+|.+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
No 439
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.59 E-value=0.0016 Score=55.03 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
=|+|+|++|||||||+++|+...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998853
No 440
>PRK08118 topology modulation protein; Reviewed
Probab=96.50 E-value=0.0023 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|.|+|.+|+|||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 441
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0014 Score=54.85 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
=++|.|++|||||||+++|....
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999875
No 442
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.43 E-value=0.0026 Score=50.48 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|..|+|||||++.|++..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 69999999999999999999863
No 443
>PRK07261 topology modulation protein; Provisional
Probab=96.41 E-value=0.0025 Score=53.09 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
No 444
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.38 E-value=0.0035 Score=42.92 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
..+|.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 445
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.38 E-value=0.0024 Score=54.92 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|||||||++.|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 5788999999999999999764
No 446
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.34 E-value=0.0029 Score=54.90 Aligned_cols=22 Identities=50% Similarity=0.498 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|+|||||+|-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5999999999999999999774
No 447
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.31 E-value=0.0036 Score=43.85 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 448
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.29 E-value=0.0033 Score=52.52 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||+|-+.+-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 7999999999999999999874
No 449
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0033 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|.|||||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 450
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.27 E-value=0.026 Score=49.84 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=47.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc----CCCCCchhhHHHHHHHHHhhh---cCCCCEEEee
Q 021750 212 FLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK----NGGKRPEENLNDFQELIQGFF---QTAPPWIMTS 284 (308)
Q Consensus 212 l~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vS 284 (308)
.+++|..........++..++...+.+.++|.-.++.....+ .......+.++.+...+..-. .+..+.+.+.
T Consensus 70 ~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd 149 (249)
T TIGR03574 70 SVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTID 149 (249)
T ss_pred eEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEec
Confidence 477787654433334555555566778877776666321111 111123333444443332211 1124667776
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 021750 285 SVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 285 A~~g~gi~el~~~i~~~~~ 303 (308)
......++++.+.|.+.+.
T Consensus 150 ~~~~~~~~ei~~~i~~~~~ 168 (249)
T TIGR03574 150 TTKKIDYNEILEEILEISE 168 (249)
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 6444577888888877543
No 451
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.26 E-value=0.0036 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+++|.||+|||||+..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 452
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.21 E-value=0.004 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.|+++|..|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 453
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.18 E-value=0.0029 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
No 454
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.14 E-value=0.05 Score=39.63 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=29.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcc
Q 021750 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYG 182 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~ 182 (308)
+++.|..|+||||+...+...- .. .|.. +.. .+ .+.++|++|..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l--~~----~g~~--v~~--~~-d~iivD~~~~~ 45 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL--AK----RGKR--VLL--ID-DYVLIDTPPGL 45 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HH----CCCe--EEE--EC-CEEEEeCCCCc
Confidence 6788999999999999988641 11 1111 111 11 78999999854
No 455
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.0082 Score=55.55 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
--|.++|..|+||||.+..|..
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHH
Confidence 3688999999999998887764
No 456
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.0092 Score=56.91 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCC---------------CceEEEEEEE----e------------CC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTP---------------GKTQCINHFR----I------------ND 171 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~---------------~~t~~~~~~~----~------------~~ 171 (308)
.++.++.++....-|||||...|.....+ +..... |.|.....+. . ++
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgI-is~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGI-ISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhce-eeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 44568899999999999999999874321 111111 2232211111 1 11
Q ss_pred ---CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHH-hccCCCCEEEEeecCC
Q 021750 172 ---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASW-LGQNQIPMTLVFTKCD 247 (308)
Q Consensus 172 ---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~-~~~~~~pvivV~NK~D 247 (308)
-+.++|.||..+.+. -.-..++ .-|+.+.|+|.-++.-.+....++. +.+.-+| +++.||+|
T Consensus 96 ~~FLiNLIDSPGHVDFSS----------EVTAALR---VTDGALVVVDcv~GvCVQTETVLrQA~~ERIkP-vlv~NK~D 161 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSS----------EVTAALR---VTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLVMNKMD 161 (842)
T ss_pred cceeEEeccCCCcccchh----------hhhheeE---eccCcEEEEEccCceEechHHHHHHHHHhhccc-eEEeehhh
Confidence 277899999864221 1112223 3345788888877755444333333 3343455 56789999
Q ss_pred CC
Q 021750 248 KR 249 (308)
Q Consensus 248 l~ 249 (308)
..
T Consensus 162 RA 163 (842)
T KOG0469|consen 162 RA 163 (842)
T ss_pred HH
Confidence 54
No 457
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.01 E-value=0.04 Score=41.98 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=48.1
Q ss_pred EcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEE--EeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCc
Q 021750 131 VGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHF--RINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTL 208 (308)
Q Consensus 131 vG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (308)
=+..|+||||+...|...- .... |...-.... .....++++|||+... ......+..+
T Consensus 6 ~~kgg~gkt~~~~~la~~~--~~~~---~~~~~l~d~d~~~~~D~IIiDtpp~~~------------~~~~~~l~~a--- 65 (106)
T cd03111 6 GAKGGVGATTLAANLAVAL--AKEA---GRRVLLVDLDLQFGDDYVVVDLGRSLD------------EVSLAALDQA--- 65 (106)
T ss_pred CCCCCCcHHHHHHHHHHHH--HhcC---CCcEEEEECCCCCCCCEEEEeCCCCcC------------HHHHHHHHHc---
Confidence 3678899999877776521 0000 111111000 0112799999998431 1222333333
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHhccC----CCCEEEEeec
Q 021750 209 VSVFLLIDASIPAKPIDLEYASWLGQN----QIPMTLVFTK 245 (308)
Q Consensus 209 ~~vl~viD~~~~~~~~~~~l~~~~~~~----~~pvivV~NK 245 (308)
|.++++++.+......-..+.+++.+. ...+.+|+|+
T Consensus 66 D~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 66 DRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 448888887654322223344444332 3456678875
No 458
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.99 E-value=0.041 Score=49.67 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
-++..-......|+++=|-|+..+.+..+..+.+.+. .+|-|||.||+||.+..
T Consensus 36 alr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~~ 89 (335)
T KOG2485|consen 36 ALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADPK 89 (335)
T ss_pred HHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccCch
Confidence 3433334445567899999999999888776666666 68999999999999743
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.98 E-value=0.0057 Score=51.59 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999775
No 460
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.97 E-value=0.006 Score=46.66 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 021750 127 EFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~ 146 (308)
-++|+|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999986
No 461
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.97 E-value=0.0056 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999774
No 462
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.96 E-value=0.0054 Score=56.44 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
=++++|++|||||||++.+.+-+
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999854
No 463
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.96 E-value=0.0063 Score=47.34 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 464
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.93 E-value=0.05 Score=51.32 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=20.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.....|.++|--|+||||..-.|..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHH
Confidence 3445799999999999998877764
No 465
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.89 E-value=0.0061 Score=51.82 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|.|.+|+|||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999874
No 466
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.88 E-value=0.0064 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|++|+|||||++.+-+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 79999999999999999997754
No 467
>PRK06217 hypothetical protein; Validated
Probab=95.86 E-value=0.0069 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|+|+|.+|+|||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999875
No 468
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.85 E-value=0.0062 Score=51.29 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
=|+|+|++||||+||++.|+...
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 38999999999999999999873
No 469
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.85 E-value=0.0068 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 470
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.85 E-value=0.0071 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|+|||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 471
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.83 E-value=0.02 Score=54.18 Aligned_cols=125 Identities=15% Similarity=0.200 Sum_probs=69.7
Q ss_pred EEEEe-CC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC---------hhH--HHHHH-
Q 021750 165 NHFRI-ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK---------PID--LEYAS- 230 (308)
Q Consensus 165 ~~~~~-~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~---------~~~--~~l~~- 230 (308)
..+.+ ++ .+.++|+.|... + ++-|.+++. .+.+|+||++.++... ... +.+..
T Consensus 228 ~~f~~~~~~~~~~~DvGGqr~-----e-----RkKW~~~F~---~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~ 294 (389)
T PF00503_consen 228 IDFNFSGSRKFRLIDVGGQRS-----E-----RKKWIHCFE---DVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFES 294 (389)
T ss_dssp EEEEE-TTEEEEEEEETSSGG-----G-----GGGGGGGGT---TESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHH
T ss_pred EEEEeecccccceecCCCCch-----h-----hhhHHHHhc---cccEEEEeecccchhhhhcccchHHHHHHHHHHHHH
Confidence 34555 44 799999999642 1 113334443 4556999999874321 111 12211
Q ss_pred Hhc---cCCCCEEEEeecCCCCCcccCCCC-----C----ch--hhHHHHHHHHHhhhc---------CCCCEEEeecCC
Q 021750 231 WLG---QNQIPMTLVFTKCDKRKKKKNGGK-----R----PE--ENLNDFQELIQGFFQ---------TAPPWIMTSSVT 287 (308)
Q Consensus 231 ~~~---~~~~pvivV~NK~Dl~~~~~~~~~-----~----~~--~~~~~~~~~~~~~~~---------~~~~~~~vSA~~ 287 (308)
++. -.+.|+||++||+|+....-.... . .. ...+...+.+...|. ..+-+..++|.+
T Consensus 295 i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d 374 (389)
T PF00503_consen 295 ICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATD 374 (389)
T ss_dssp HHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTS
T ss_pred HHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecc
Confidence 111 157999999999997643221111 0 11 233444444443322 122455789999
Q ss_pred CCCHHHHHHHHHHHH
Q 021750 288 NQGRDEILLHMAQLR 302 (308)
Q Consensus 288 g~gi~el~~~i~~~~ 302 (308)
.+++..+|+.+.+.+
T Consensus 375 ~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 375 TENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCcC
Confidence 999999999888754
No 472
>PRK14530 adenylate kinase; Provisional
Probab=95.82 E-value=0.0073 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
++|+|+|.||+||||+.+.|...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999764
No 473
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.81 E-value=0.0075 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|.|.|.||+|||||+++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999998863
No 474
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.81 E-value=0.0074 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 7999999999999999999985
No 475
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.0073 Score=52.43 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|+|++|+|||||+..+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 599999999999999999987
No 476
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.0075 Score=48.65 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+|.+.|-||+|||||..++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 55689999999999999999999864
No 477
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.79 E-value=0.0079 Score=51.90 Aligned_cols=22 Identities=50% Similarity=0.502 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 478
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.79 E-value=0.0076 Score=50.89 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 479
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.79 E-value=0.0087 Score=46.50 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||+++..+...
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhc
Confidence 6899999999999999999885
No 480
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.78 E-value=0.0071 Score=51.90 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|.+|+|||||++.|.+.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
No 481
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.78 E-value=0.0083 Score=50.27 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.++|+|++|+|||||++.+..
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 799999999999999999864
No 482
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0077 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 483
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.76 E-value=0.0082 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 484
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.0077 Score=52.67 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 485
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.75 E-value=0.0019 Score=54.29 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
=|+|+|++|+||+||.++|+..
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3889999999999999999874
No 486
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.73 E-value=0.0096 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.+-|+++|.||+||||+++.|..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 487
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.14 Score=43.87 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=76.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHH-HHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDK-FTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~-~~~~~~~~ 204 (308)
+=|.+.|.||+|||||.+-|...-. ...-..+..+.+. ....+||-.--.+ .+ .++. +.+..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~-~~i~~vi~l~kdy------~~~i~~DEslpi~----ke---~yres~~ks~~rl 67 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR-QEIWRVIHLEKDY------LRGILWDESLPIL----KE---VYRESFLKSVERL 67 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH-Hhhhhccccchhh------hhheecccccchH----HH---HHHHHHHHHHHHH
Confidence 4588999999999999998876311 1111111111110 1234455311100 11 1111 11111111
Q ss_pred cCC-ccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC----CcccCCCCCchhhHHHHHHHHHhhhc---C
Q 021750 205 RST-LVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR----KKKKNGGKRPEENLNDFQELIQGFFQ---T 276 (308)
Q Consensus 205 ~~~-~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 276 (308)
... ++--+.++|..+-......++.....+..++..|+-.++-+. .+.++....+.+.++++.+.+.+-.+ +
T Consensus 68 ldSalkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~RfEePn~~~rW 147 (261)
T COG4088 68 LDSALKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRFEEPNPDRRW 147 (261)
T ss_pred HHHHhcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhhcCCCCCccc
Confidence 110 111467788887777777777777777888888888887542 12233344567777777777654222 3
Q ss_pred CCCEEEee
Q 021750 277 APPWIMTS 284 (308)
Q Consensus 277 ~~~~~~vS 284 (308)
..|.+.+-
T Consensus 148 Dspll~id 155 (261)
T COG4088 148 DSPLLVID 155 (261)
T ss_pred cCceEEEe
Confidence 45666654
No 488
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.72 E-value=0.0076 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+-++|+|.+|+|||||+++++..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999874
No 489
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.71 E-value=0.0089 Score=46.68 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|.+.|+||+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999875
No 490
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.70 E-value=0.009 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999985
No 491
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.69 E-value=0.0086 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 492
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.69 E-value=0.0093 Score=50.93 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999985
No 493
>PRK03839 putative kinase; Provisional
Probab=95.68 E-value=0.0089 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|.||+||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 494
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.0095 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 495
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.009 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 496
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.009 Score=51.67 Aligned_cols=22 Identities=45% Similarity=0.516 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 497
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.65 E-value=0.0093 Score=48.17 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999986
No 498
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.65 E-value=0.0097 Score=51.13 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 499
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.64 E-value=0.0099 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.|++.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999874
No 500
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.63 E-value=0.0093 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
Done!