BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021751
         (308 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 146/205 (71%), Gaps = 24/205 (11%)

Query: 38  NSEEEQSGSSSGMNKGIKLDRGDDNNNNSSSEGKELFQGSGEGEITRRPRGRPAGSKNKP 97
           +   E   S+   ++  + D   D N +SS+ GK             RPRGRP GSKNK 
Sbjct: 55  DDSRESDHSNKDHHQQGRPD--SDPNTSSSAPGK-------------RPRGRPPGSKNKA 99

Query: 98  KPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPA 157
           KPPII+TRDS NALR+HV+E++ G DIVESV+T+ARRR RGV +L G GTV+NVTLRQP 
Sbjct: 100 KPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPV 159

Query: 158 SP---------GAIVSLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVG 208
           +P         G +V+LHGRFEILSL+G+ LPPPAPP A GL+I+LAGGQGQVVGGSVV 
Sbjct: 160 TPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVA 219

Query: 209 TLMTSGPVVIMAASFSNAAYERLPL 233
            L+ S PV++MAASFSNA +ERLP+
Sbjct: 220 PLIASAPVILMAASFSNAVFERLPI 244


>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
           GN=glmU PE=3 SV=1
          Length = 621

 Score = 41.2 bits (95), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)

Query: 110 ALRTHVMEIADGCDIVESVATFARRR--QRGVCILSGTGTVTNVTLRQPASPGAIVSLHG 167
           +LR + + +  G D+ + +  FAR++  Q G  +LS  G+++  TLR  A       L  
Sbjct: 467 SLRVYPLRLLPGQDLKQELERFARQQPLQAGF-VLSAVGSLSQATLRL-ADQTEDYLLSE 524

Query: 168 RFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVV-GTLMTSGPVVIMAASF 223
           R EIL+LSGS  P         L + +A  QG+  GG +  G L+ +   +++A S 
Sbjct: 525 RLEILALSGSLCPD-----GVHLHLAVADAQGRTWGGHLRPGCLIYTTAEIVLADSL 576


>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
           JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
          Length = 632

 Score = 38.5 bits (88), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 10/116 (8%)

Query: 110 ALRTHVMEIADGCDIVESVATFARRR--QRGVCILSGTGTVTNVTLRQPASPGAIVSLHG 167
           +L+ + + +  G D+ + +   AR++  Q G  +LS  G+++  TLR     G  + L  
Sbjct: 469 SLKIYPLRLFPGQDLKQELERLARQQPLQAGF-VLSAVGSLSQATLRLADQTGDHL-LSE 526

Query: 168 RFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVV-GTLMTSGPVVIMAAS 222
           R EIL+LSGS  P         L + +A  +GQ  GG +  G L+ +   +++A S
Sbjct: 527 RLEILALSGSLCPD-----GVHLHLTVADARGQTWGGHLRPGCLIYTTAEIVLADS 577


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.133    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,735,763
Number of Sequences: 539616
Number of extensions: 6609458
Number of successful extensions: 52664
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 42319
Number of HSP's gapped (non-prelim): 8020
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)