Query 021753
Match_columns 308
No_of_seqs 157 out of 527
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:24:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13883 Pyrid_oxidase_2: Pyri 100.0 3.1E-34 6.6E-39 250.8 13.8 159 7-196 2-169 (170)
2 KOG3374 Cellular repressor of 99.9 1.3E-23 2.8E-28 180.4 12.5 165 5-198 38-208 (210)
3 COG0748 HugZ Putative heme iro 99.9 7.9E-25 1.7E-29 198.7 3.5 234 11-302 5-243 (245)
4 PF10615 DUF2470: Protein of u 99.8 7.9E-19 1.7E-23 136.2 8.6 80 200-294 2-83 (83)
5 PRK03467 hypothetical protein; 99.1 3.8E-09 8.3E-14 89.9 14.9 129 9-186 4-137 (144)
6 PF01243 Pyridox_oxidase: Pyri 98.9 8.4E-09 1.8E-13 79.0 9.2 85 13-114 3-89 (89)
7 TIGR03668 Rv0121_F420 PPOX cla 98.9 5.1E-08 1.1E-12 83.0 13.8 88 13-114 3-103 (141)
8 TIGR03618 Rv1155_F420 PPOX cla 98.8 7E-08 1.5E-12 78.0 12.3 85 26-127 1-88 (117)
9 TIGR03667 Rv3369 PPOX class pr 98.7 3.4E-07 7.4E-12 76.5 13.1 87 12-115 4-90 (130)
10 COG0748 HugZ Putative heme iro 98.7 4.3E-09 9.3E-14 96.3 0.4 143 13-194 85-227 (245)
11 TIGR03666 Rv2061_F420 PPOX cla 98.6 7.2E-07 1.6E-11 75.0 13.1 92 18-126 8-99 (132)
12 PF12900 Pyridox_ox_2: Pyridox 98.2 3E-05 6.4E-10 65.4 11.5 93 12-116 2-99 (143)
13 COG3467 Predicted flavin-nucle 97.9 0.00047 1E-08 60.3 14.8 97 12-116 13-110 (166)
14 PRK05679 pyridoxamine 5'-phosp 97.9 0.00018 4E-09 64.3 11.6 78 20-115 25-103 (195)
15 COG3871 Uncharacterized stress 97.6 0.00062 1.4E-08 57.9 10.3 125 12-186 7-134 (145)
16 COG3787 Uncharacterized protei 97.6 0.0018 3.9E-08 54.1 11.8 130 13-192 3-139 (145)
17 PRK06733 hypothetical protein; 97.3 0.0072 1.6E-07 52.1 13.2 121 9-196 7-129 (151)
18 TIGR00558 pdxH pyridoxamine-ph 97.3 0.0061 1.3E-07 55.5 13.3 77 21-115 48-125 (217)
19 PLN03049 pyridoxine (pyridoxam 96.7 0.034 7.4E-07 56.1 14.2 76 21-114 288-364 (462)
20 COG0259 PdxH Pyridoxamine-phos 96.3 0.062 1.3E-06 48.3 11.5 79 19-115 43-122 (214)
21 COG5015 Uncharacterized conser 95.2 0.71 1.5E-05 38.4 12.4 119 15-185 4-125 (132)
22 TIGR00026 hi_GC_TIGR00026 deaz 94.9 0.52 1.1E-05 38.6 11.0 78 24-128 9-91 (113)
23 PLN02918 pyridoxine (pyridoxam 94.6 0.49 1.1E-05 48.7 12.5 75 23-115 372-447 (544)
24 PF04075 DUF385: Domain of unk 94.0 0.44 9.5E-06 40.1 8.9 53 24-80 27-84 (132)
25 PF04299 FMN_bind_2: Putative 91.3 4.2 9.2E-05 35.6 11.7 100 9-114 9-121 (169)
26 KOG2586 Pyridoxamine-phosphate 85.7 2.6 5.6E-05 38.1 6.4 74 24-115 58-133 (228)
27 COG3576 Predicted flavin-nucle 50.4 25 0.00054 30.9 4.3 64 14-82 33-100 (173)
28 PF12766 Pyridox_oxase_2: Pyri 46.9 1.1E+02 0.0025 24.3 7.2 61 20-84 18-86 (100)
29 COG2808 PaiB Transcriptional r 46.4 88 0.0019 28.4 7.1 98 9-114 9-121 (209)
30 PF10406 TAF8_C: Transcription 33.2 61 0.0013 22.6 3.2 29 276-304 22-50 (51)
No 1
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=100.00 E-value=3.1e-34 Score=250.75 Aligned_cols=159 Identities=22% Similarity=0.351 Sum_probs=117.7
Q ss_pred CCCCHHHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeE----ec-CCeEEEEecCCchhhcccccCCCceEEEeC
Q 021753 7 TVLTLAEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYM----LK-KGKPFIWVPEKDMHNVNTIIDERGSFAVAS 81 (308)
Q Consensus 7 ~~~s~ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~----~d-~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~ 81 (308)
...++|+.||+|++.+++|+|+|++... ..+|+||+|++.|+ .+ +|+|||++|.++.|++||++||||||+|.+
T Consensus 2 ~~~~aA~~AR~Ll~~~~~g~LsTls~~~-~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~ 80 (170)
T PF13883_consen 2 TREEAAELARTLLHQSRWGTLSTLSTQK-DIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISE 80 (170)
T ss_dssp -TT-HHHHHHHHHHH-SEEEEEEE--SG-GGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEG
T ss_pred ChHHHHHHHHHHHhhCCEEEEEeccCCC-CCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEec
Confidence 3568899999999999999999998711 12359999999999 77 999999999999999999999999999999
Q ss_pred CCCCchh-hhhcccCCCCcEEEEEEEEEEcCchhHHHHHHHHHHHHhhhhhhhccccccccccccCCccccccCCcchhh
Q 021753 82 PTPGPLA-KLLHSIKKIPTRVALSGDIAPLKSEKAQLAAECLKEVMLSEQRVIGESSYTVSGVLSSSNFITTSRNENLKD 160 (308)
Q Consensus 82 ~~~~~l~-~~~~~~~~~~~Rvtl~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rhp~~~~ 160 (308)
...+... ..++++.+.++||||+|++++|++++.. .++++|++ |||+++.
T Consensus 81 ~~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~----~a~~~yl~-------------------------~HP~a~~ 131 (170)
T PF13883_consen 81 PQGGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAA----AARAAYLS-------------------------RHPDAKH 131 (170)
T ss_dssp GGSSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHH----HHHHHHHH-------------------------H-GGGGG
T ss_pred CCCCcccccCCCCCCCCCcEEEEEEEEEEcCchHHH----HHHHHHHH-------------------------HCcCccc
Confidence 7664432 3456666679999999999999866543 48999999 9999999
Q ss_pred hhccC---CCeEEEEEEEeEEEEEeCCCceeeechhhhc
Q 021753 161 LLDER---EKYVVYKFNISSCMYIDGHGGTHEVDLKDVQ 196 (308)
Q Consensus 161 ~ld~~---~df~~~rL~~~~~~lv~gfG~a~~v~~~d~~ 196 (308)
|++ + |||.||||+|++|+||||||+++||+++||.
T Consensus 132 w~~-~~~~hdf~~~rl~i~~v~~vgGFG~~~~i~~~~Y~ 169 (170)
T PF13883_consen 132 WLP-FNSPHDFFFYRLEIERVYLVGGFGGAAWISAEEYY 169 (170)
T ss_dssp S-G-G---G--EEEEEEEEEEEEE-SSSS-EEE-HHHHH
T ss_pred ccc-ccccCccEEEEEEEEEEEEECccCCceEeCHHHhc
Confidence 999 8 9999999999999999999999999999996
No 2
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=99.90 E-value=1.3e-23 Score=180.36 Aligned_cols=165 Identities=15% Similarity=0.254 Sum_probs=143.3
Q ss_pred CCCCCCHHHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEec-----CCeEEEEecCCchhhcccccCCCceEEE
Q 021753 5 NATVLTLAEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLK-----KGKPFIWVPEKDMHNVNTIIDERGSFAV 79 (308)
Q Consensus 5 ~~~~~s~ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d-----~G~p~~~vs~~a~Ht~nl~~dpr~SL~v 79 (308)
+..+...|..||.|++++.||+|+|++..+ .-+|+||+.++++.-. .|.||||+++++....|++.|++++|++
T Consensus 38 ~p~r~d~A~iAR~lvh~~~Wgal~TlSt~e-~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~ 116 (210)
T KOG3374|consen 38 RPQRLDHAKIARDLVHRANWGALGTLSTNE-RVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATLLF 116 (210)
T ss_pred CCchhhHHHHHHHHhhhcccceeeeeeecc-cccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCceeEEe
Confidence 345678999999999999999999999864 2245999999988632 5889999999999999999999999999
Q ss_pred eCCCCCchh-hhhcccCCCCcEEEEEEEEEEcCchhHHHHHHHHHHHHhhhhhhhccccccccccccCCccccccCCcch
Q 021753 80 ASPTPGPLA-KLLHSIKKIPTRVALSGDIAPLKSEKAQLAAECLKEVMLSEQRVIGESSYTVSGVLSSSNFITTSRNENL 158 (308)
Q Consensus 80 ~~~~~~~l~-~~~~~~~~~~~Rvtl~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rhp~~ 158 (308)
++....-+. .-++|+.++|.|++|+|++..++..+..+ +..+.+++. |||++
T Consensus 117 s~~qt~~Ck~~g~DPm~PtC~~~mlsG~v~k~~~~~~~~--~~~~~alf~-------------------------rHPem 169 (210)
T KOG3374|consen 117 SDEQTLRCKEGGKDPMEPTCARSMLSGQVKKMDPSDKSY--QPSLDALFR-------------------------RHPEM 169 (210)
T ss_pred eccccchhhcCCCCCCCchhhhheecceEEEeCCcchhh--hhhhhhHhh-------------------------cCHhH
Confidence 985555444 36899999999999999999998655442 346688888 99999
Q ss_pred hhhhccCCCeEEEEEEEeEEEEEeCCCceeeechhhhccc
Q 021753 159 KDLLDEREKYVVYKFNISSCMYIDGHGGTHEVDLKDVQTS 198 (308)
Q Consensus 159 ~~~ld~~~df~~~rL~~~~~~lv~gfG~a~~v~~~d~~~A 198 (308)
..|++ .|+|.|.+|+|..|+..|.||+.+.|+++||.+.
T Consensus 170 ~~w~~-~hn~~~~~l~isni~vld~~ggp~~vs~~~yy~v 208 (210)
T KOG3374|consen 170 INWVK-AHNFYLCELEISNIFVLDFYGGPHKVSASDYYAV 208 (210)
T ss_pred cCCcc-ccceEEEEEeeeeEEEEEecCCCcccCHHHhccc
Confidence 99999 9999999999999999999999999999999863
No 3
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.9e-25 Score=198.69 Aligned_cols=234 Identities=18% Similarity=0.143 Sum_probs=194.3
Q ss_pred HHHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEec-CCeEEEEecCCchhhcccccCCCceEEEeCCCC-Cchh
Q 021753 11 LAEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLK-KGKPFIWVPEKDMHNVNTIIDERGSFAVASPTP-GPLA 88 (308)
Q Consensus 11 ~ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d-~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~-~~l~ 88 (308)
...-+|.+++..+.|.|+|.... +| +||+|++++.+| +|+|+++++.+..|++ +..|+|||+++.+++. +++.
T Consensus 5 a~~na~~~l~~~~~~~l~~~~~~-~g---~p~~sv~~~gid~~g~p~~~~~~~~~h~~-~~~d~r~sil~~~~g~~d~~~ 79 (245)
T COG0748 5 AHMNARHLLRSARLAALAGLEPV-TG---VPFVSVVPVGIDIDGNPLILLSRLFPHTA-DEADPRCSILLGEPGKGDELA 79 (245)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC-CC---CceeeeccceeccCCCcceeEeeeccccc-cccChhhhheecCcCcCChhh
Confidence 34568999999999999999875 55 999999999999 9999999999999999 9999999999998876 7777
Q ss_pred hhhcccCCCCcEEEEEEEEEEcCchhHHHHHHHHHHHHhhhhhhhccccccccccccCCccccccCCcchhhhhccCCCe
Q 021753 89 KLLHSIKKIPTRVALSGDIAPLKSEKAQLAAECLKEVMLSEQRVIGESSYTVSGVLSSSNFITTSRNENLKDLLDEREKY 168 (308)
Q Consensus 89 ~~~~~~~~~~~Rvtl~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rhp~~~~~ld~~~df 168 (308)
.+||++.+....++.++... ..+++.++. ++|++..+++ +.||
T Consensus 80 ---------~~Rl~~e~~afr~~~~sv~l--at~~~~g~~-------------------------~~syAp~~~~-~~d~ 122 (245)
T COG0748 80 ---------LPRLTLEIEAFRLEFDSVAL--ATLRERGLP-------------------------RASYAPLYVD-DGDY 122 (245)
T ss_pred ---------ccchhHHHHHHHhccchHHH--hhhhhcCCc-------------------------CCCcCceEec-CCce
Confidence 89999999999998776543 345666665 8899999999 8899
Q ss_pred EEEEEEEeEEEEEeCCCceeeechhhhcc-cccccc-hhhHHHHHHHHhhchhHHHHHHHHHHHhccCCCCc-eEEEeec
Q 021753 169 VVYKFNISSCMYIDGHGGTHEVDLKDVQT-SKADML-APLSAKLIDGINQSEARRKALVLFCFVYLNANAKD-AFMLAVD 245 (308)
Q Consensus 169 ~~~rL~~~~~~lv~gfG~a~~v~~~d~~~-A~pDpl-~~~~~~~l~hmN~dh~~~~al~~~~~~~~~~~~~~-a~~~~vD 245 (308)
.+|+.++.+.....|++. +.+.+.. .+..++ ...+.+++.|||++|. ++...++..+.+..-.. .+|.+||
T Consensus 123 ~iyis~~arh~~N~~~~p----~vs~m~iedea~a~s~~~r~rl~~hmnAd~~--eai~~yaqv~~~~~e~~~~~I~~Id 196 (245)
T COG0748 123 YIYISEIARHARNLGFNP----KVSVMFIEDEAKAKSAFARKRLREHMNADHA--EAIAEYAQVLAQLAEATGGRIKGID 196 (245)
T ss_pred EEEEehHHHHhhccCcCC----chhhheecCchhhhhHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHhhhhcchhhccc
Confidence 999999999999999996 2222221 123333 3455689999999999 88888898887774333 4499999
Q ss_pred CCCceEEeecCCCCCCCCCCCccceEEEeeCCCcCCCHHHHHHHHHHHHHHHHhhhc
Q 021753 246 RKGFDVLGKVPGPATKDGMPGFLWKEFRFTFKEEAHDVESFCSQLAQMEEEVVRKVS 302 (308)
Q Consensus 246 r~G~dlr~~~~~~~~~~~~~~~~~~~~Rl~F~~pv~~~~~~~~~l~~l~~~A~~~~~ 302 (308)
+.|+++.+....+ ...+|++|+++..+.++.+..|+.|++.++...+
T Consensus 197 ~~gdfll~~l~~~----------~gl~v~gFgqa~~~~~d~~~~lV~l~~~~h~~~~ 243 (245)
T COG0748 197 AMGDFLLFQLTPG----------QGLFVKGFGQAYAISGDGRIALVGLAGGPHGFAH 243 (245)
T ss_pred ccccceeeeccCC----------CceEEeccchhhccccchhHHHHHHhcCcccccc
Confidence 9999999975544 5679999999999999999999999998776554
No 4
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=99.78 E-value=7.9e-19 Score=136.18 Aligned_cols=80 Identities=33% Similarity=0.486 Sum_probs=66.1
Q ss_pred cccchh-hHHHHHHHHhhchhHHHHHHHHHHHhccC-CCCceEEEeecCCCceEEeecCCCCCCCCCCCccceEEEeeCC
Q 021753 200 ADMLAP-LSAKLIDGINQSEARRKALVLFCFVYLNA-NAKDAFMLAVDRKGFDVLGKVPGPATKDGMPGFLWKEFRFTFK 277 (308)
Q Consensus 200 pDpl~~-~~~~~l~hmN~dh~~~~al~~~~~~~~~~-~~~~a~~~~vDr~G~dlr~~~~~~~~~~~~~~~~~~~~Rl~F~ 277 (308)
|||+.+ .+++||+|||+||. +++..||+++.++ .+.+|+|++||++||++++ ++ +..+||+|+
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~--d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~----------~~~~ripF~ 66 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHA--DDLLLYARHYGGVPDAASARMTDIDRDGFDLRV---GG----------DQDVRIPFP 66 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-H--HHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TT----------TEEEEEE-S
T ss_pred cCcccHHHHHHHHHHHHHhHH--HHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eC----------CcceEcCCC
Confidence 799995 99999999999999 9999999999998 5799999999999999999 22 689999999
Q ss_pred CcCCCHHHHHHHHHHHH
Q 021753 278 EEAHDVESFCSQLAQME 294 (308)
Q Consensus 278 ~pv~~~~~~~~~l~~l~ 294 (308)
+|+++++++|.+|++|+
T Consensus 67 ~p~~~~~e~r~~lV~ma 83 (83)
T PF10615_consen 67 PPVTDPEEARDALVEMA 83 (83)
T ss_dssp S---SHCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999999995
No 5
>PRK03467 hypothetical protein; Provisional
Probab=99.10 E-value=3.8e-09 Score=89.91 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEec-CCeEEEEec-CCchhhcccccCCCceEEEeCCCCCc
Q 021753 9 LTLAEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLK-KGKPFIWVP-EKDMHNVNTIIDERGSFAVASPTPGP 86 (308)
Q Consensus 9 ~s~ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d-~G~p~~~vs-~~a~Ht~nl~~dpr~SL~v~~~~~~~ 86 (308)
+..-+++..+|......+|||.+. + .|++.-+=|+.| ++--++++| ...+|.+|+..||++..+|.......
T Consensus 4 ~~~~~~I~~fl~~~hvltLa~~~~---~---~~w~A~cFY~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~v 77 (144)
T PRK03467 4 MDTLTAISRWLAKQHVVTLCVGQE---G---ELWCANCFYVFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKTV 77 (144)
T ss_pred hhHHHHHHHHHHhCcEEEEEEEcC---C---CcceEEEEEEEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcch
Confidence 356678999999999999999863 2 588887889998 655444444 55599999999999999998755432
Q ss_pred hhhhhcccCCCCcEEEEEEEEEEcCchhHHHHHHHHHHHHhhhhhhhccccccccccccCCccccccCCcchhhhhccCC
Q 021753 87 LAKLLHSIKKIPTRVALSGDIAPLKSEKAQLAAECLKEVMLSEQRVIGESSYTVSGVLSSSNFITTSRNENLKDLLDERE 166 (308)
Q Consensus 87 l~~~~~~~~~~~~Rvtl~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rhp~~~~~ld~~~ 166 (308)
.. -.-|-+.|.+..+.+++.. .+++.|.+ |||-++..
T Consensus 78 ~~---------I~GvQ~~G~~~~l~~~e~~----~Ar~~Y~~-------------------------rFP~A~~~----- 114 (144)
T PRK03467 78 AL---------IRGVQFKGEIRRLEGEESD----AARKRYNR-------------------------RFPVARAL----- 114 (144)
T ss_pred hh---------ceEEEEEEEEEecChhHHH----HHHHHHHH-------------------------hCcchhcc-----
Confidence 22 3567899999999876543 47899999 99987643
Q ss_pred CeEEEEEEEeEEEEEe---CCCc
Q 021753 167 KYVVYKFNISSCMYID---GHGG 186 (308)
Q Consensus 167 df~~~rL~~~~~~lv~---gfG~ 186 (308)
...+|+|++..+.+.| |||+
T Consensus 115 ~~~iw~l~l~~iK~tdN~LGFgk 137 (144)
T PRK03467 115 SAPVWELRLDEIKMTDNTLGFGK 137 (144)
T ss_pred CCceEEEEEEEEEEecccccccc
Confidence 3469999999999999 9995
No 6
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=98.92 E-value=8.4e-09 Score=79.04 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=73.5
Q ss_pred HHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEecCC--eEEEEecCCchhhcccccCCCceEEEeCCCCCchhhh
Q 021753 13 EKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLKKG--KPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKL 90 (308)
Q Consensus 13 e~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d~G--~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~ 90 (308)
+.++.+++....++|+|++. +|.|+.+.+.|...++ .++|.....+.+.+||..||+++|++..+.. .
T Consensus 3 ~~~~~~l~~~~~~~laTv~~-----dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~~---~-- 72 (89)
T PF01243_consen 3 EEIREFLEESKYCVLATVDE-----DGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPEG---T-- 72 (89)
T ss_dssp HHHHHHHHSTSEEEEEEEET-----TSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETTT---T--
T ss_pred HHHHHHhcCCCEEEEEEECC-----CCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcCc---C--
Confidence 67899999999999999873 3499999999998733 5999999999999999999999999999761 1
Q ss_pred hcccCCCCcEEEEEEEEEEcCchh
Q 021753 91 LHSIKKIPTRVALSGDIAPLKSEK 114 (308)
Q Consensus 91 ~~~~~~~~~Rvtl~G~~~~v~~~~ 114 (308)
...+.+.|.++.++++|
T Consensus 73 -------~~~v~~~G~a~~~~d~E 89 (89)
T PF01243_consen 73 -------RRGVRVSGTAEILTDEE 89 (89)
T ss_dssp -------TEEEEEEEEEEEESHHH
T ss_pred -------ceEEEEEEEEEEEcCCC
Confidence 56999999999998754
No 7
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=98.89 E-value=5.1e-08 Score=82.98 Aligned_cols=88 Identities=15% Similarity=0.032 Sum_probs=67.4
Q ss_pred HHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEec-------CCeEEEEe------cCCchhhcccccCCCceEEE
Q 021753 13 EKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLK-------KGKPFIWV------PEKDMHNVNTIIDERGSFAV 79 (308)
Q Consensus 13 e~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d-------~G~p~~~v------s~~a~Ht~nl~~dpr~SL~v 79 (308)
+.++.+|+....|.|+|++ .+|.|+.+.+.|+.+ +|..||.. +....+.+||..|||++|+|
T Consensus 3 ~e~~~~L~~~~~~~LaTv~-----~dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v 77 (141)
T TIGR03668 3 FEARTRFAQARVARLATVS-----PDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLV 77 (141)
T ss_pred HHHHHHHccCCEEEEEEEC-----CCCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEE
Confidence 5789999999999999996 345999999999998 66655553 23457789999999999998
Q ss_pred eCCCCCchhhhhcccCCCCcEEEEEEEEEEcCchh
Q 021753 80 ASPTPGPLAKLLHSIKKIPTRVALSGDIAPLKSEK 114 (308)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~Rvtl~G~~~~v~~~~ 114 (308)
......... ..-|++.|+++.+.+++
T Consensus 78 ~~~~~~~~~---------~~~v~v~G~a~~~~d~~ 103 (141)
T TIGR03668 78 DRYDDDWTR---------LWWVRADGRAEILRPGE 103 (141)
T ss_pred ecCCCCccc---------eEEEEEEEEEEEecCCc
Confidence 753321111 22489999999998765
No 8
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=98.83 E-value=7e-08 Score=78.05 Aligned_cols=85 Identities=19% Similarity=0.096 Sum_probs=65.7
Q ss_pred EEeeeccCCCCCCCceeeeeeeeEec--CCeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhhcccCCCCcEEEE
Q 021753 26 RLNTIKADAEGSKESIYTSKVKYMLK--KGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLLHSIKKIPTRVAL 103 (308)
Q Consensus 26 ~LaT~~~~~~G~~g~P~~S~v~y~~d--~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~~~~~~~~Rvtl 103 (308)
+|+|++. +|.|+.+.+.|+.+ ++.++|..+..+.+.+||..||+++|++..+... ..++.+
T Consensus 1 ~LaTv~~-----~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~------------~~~v~i 63 (117)
T TIGR03618 1 VLATIRA-----DGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFP------------YRYVEV 63 (117)
T ss_pred CEEEECC-----CCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCC------------ccEEEE
Confidence 4788853 35999999999884 6678899989899999999999999999986541 248999
Q ss_pred EEEEEEcCchh-HHHHHHHHHHHHh
Q 021753 104 SGDIAPLKSEK-AQLAAECLKEVML 127 (308)
Q Consensus 104 ~G~~~~v~~~~-~~~~~~~~~~~~~ 127 (308)
.|.++.+.+++ ...+++.+.+.|.
T Consensus 64 ~G~a~~v~d~~~~~~~~~~l~~~y~ 88 (117)
T TIGR03618 64 EGTAELVEDPDPVRDLVDRLAERYR 88 (117)
T ss_pred EEEEEEecCCcccHHHHHHHHHHHc
Confidence 99999997644 2333445555554
No 9
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=98.71 E-value=3.4e-07 Score=76.52 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=72.2
Q ss_pred HHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEecCCeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhh
Q 021753 12 AEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLKKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLL 91 (308)
Q Consensus 12 ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~ 91 (308)
-+.++.+|...+.+.|+|++. +|.|+...+.|..++|..+|.-...+...+||..||+++|++..+...
T Consensus 4 ~~~~~~~L~~~~~~~LaT~~~-----dG~P~~~P~~~~~~d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~------ 72 (130)
T TIGR03667 4 TAKVARRLREESIVWLTTVRR-----SGQPQPVPVWFLWDGTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRG------ 72 (130)
T ss_pred CHHHHHHhcCCCeEEEEEECC-----CCceEEEEEEEEEECCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCC------
Confidence 367889999999999999963 359999999998889999888888889999999999999999774331
Q ss_pred cccCCCCcEEEEEEEEEEcCchhH
Q 021753 92 HSIKKIPTRVALSGDIAPLKSEKA 115 (308)
Q Consensus 92 ~~~~~~~~Rvtl~G~~~~v~~~~~ 115 (308)
..-+.+.|.++.+.+.+.
T Consensus 73 ------~~~v~v~G~a~i~~d~~~ 90 (130)
T TIGR03667 73 ------GDVVVFTGTAEVVADAPP 90 (130)
T ss_pred ------ceEEEEEEEEEEeCCchh
Confidence 235789999999876543
No 10
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=98.67 E-value=4.3e-09 Score=96.30 Aligned_cols=143 Identities=10% Similarity=0.113 Sum_probs=99.4
Q ss_pred HHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEecCCeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhhc
Q 021753 13 EKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLKKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLLH 92 (308)
Q Consensus 13 e~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~ 92 (308)
..++..-....+..|+|+.. +|.|-+|+.+++.++|..+||+|..++|.+|+..+|.+|+|+.++...+.. .+.
T Consensus 85 ~e~~afr~~~~sv~lat~~~-----~g~~~~syAp~~~~~~d~~iyis~~arh~~N~~~~p~vs~m~iedea~a~s-~~~ 158 (245)
T COG0748 85 LEIEAFRLEFDSVALATLRE-----RGLPRASYAPLYVDDGDYYIYISEIARHARNLGFNPKVSVMFIEDEAKAKS-AFA 158 (245)
T ss_pred HHHHHHHhccchHHHhhhhh-----cCCcCCCcCceEecCCceEEEEehHHHHhhccCcCCchhhheecCchhhhh-HHH
Confidence 45677777888999999863 359999999999999999999999999999999999999999986653221 000
Q ss_pred ccCCCCcEEEEEEEEEEcCchhHHHHHHHHHHHHhhhhhhhccccccccccccCCccccccCCcchhhhhccCCCeEEEE
Q 021753 93 SIKKIPTRVALSGDIAPLKSEKAQLAAECLKEVMLSEQRVIGESSYTVSGVLSSSNFITTSRNENLKDLLDEREKYVVYK 172 (308)
Q Consensus 93 ~~~~~~~Rvtl~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rhp~~~~~ld~~~df~~~r 172 (308)
..|++.......++.. +.+ ..+...+-. ++.+...-++.+.||.++.
T Consensus 159 -----r~rl~~hmnAd~~eai-~~y--aqv~~~~~e-------------------------~~~~~I~~Id~~gdfll~~ 205 (245)
T COG0748 159 -----RKRLREHMNADHAEAI-AEY--AQVLAQLAE-------------------------ATGGRIKGIDAMGDFLLFQ 205 (245)
T ss_pred -----HHHHHHHhhhHHHHHH-HHH--HHHHHHHhh-------------------------hhcchhhcccccccceeee
Confidence 2233332222222210 000 111111111 4444345566789999999
Q ss_pred EEEeEEEEEeCCCceeeechhh
Q 021753 173 FNISSCMYIDGHGGTHEVDLKD 194 (308)
Q Consensus 173 L~~~~~~lv~gfG~a~~v~~~d 194 (308)
|++.+.+++-|||+++.++.+.
T Consensus 206 l~~~~gl~v~gFgqa~~~~~d~ 227 (245)
T COG0748 206 LTPGQGLFVKGFGQAYAISGDG 227 (245)
T ss_pred ccCCCceEEeccchhhccccch
Confidence 9999999999999998887653
No 11
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=98.64 E-value=7.2e-07 Score=75.01 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=72.5
Q ss_pred HHhhCCceEEeeeccCCCCCCCceeeeeeeeEecCCeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhhcccCCC
Q 021753 18 ILAANWQGRLNTIKADAEGSKESIYTSKVKYMLKKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLLHSIKKI 97 (308)
Q Consensus 18 ll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~~~~~~ 97 (308)
.|+..+.+.|+|.. .+|.|+.+.+.|+.++|..+|..+......+||..||+++|.+.+....
T Consensus 8 ~L~~~~~~~LaT~~-----~dG~P~~~Pv~~~~d~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~~------------ 70 (132)
T TIGR03666 8 DLARARYALLTTFR-----KDGTPVPTPVWAAVDGDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGR------------ 70 (132)
T ss_pred HhccCcEEEEEEEC-----CCCcEEEEEEEEEEECCEEEEEECCcCHHHHHHHhCCCEEEEEECCCCC------------
Confidence 47788899999975 3458999999999999999999999889999999999999999875432
Q ss_pred CcEEEEEEEEEEcCchhHHHHHHHHHHHH
Q 021753 98 PTRVALSGDIAPLKSEKAQLAAECLKEVM 126 (308)
Q Consensus 98 ~~Rvtl~G~~~~v~~~~~~~~~~~~~~~~ 126 (308)
...+++.|+++.+.+++...++..+.+.|
T Consensus 71 ~~~v~v~G~A~~v~~~e~~~~~~~l~~kY 99 (132)
T TIGR03666 71 PTGPVVPGRARILDGAETARARDLLARRY 99 (132)
T ss_pred EeEEEEEEEEEEEcchhHHHHHHHHHHHc
Confidence 23589999999996555543334444444
No 12
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=98.16 E-value=3e-05 Score=65.44 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=70.8
Q ss_pred HHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEecCCeEEEEecCCchhhcccccCCCceEEEeCCCC-----Cc
Q 021753 12 AEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLKKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTP-----GP 86 (308)
Q Consensus 12 ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~-----~~ 86 (308)
-+.+..+|..+..|+|++.+ +| .||...+.|+.++|..||.-+.......+|..+| +++.+..... .+
T Consensus 2 ~~e~~~iL~~~~~g~la~~~---~~---~Py~vP~~f~~~~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~ 74 (143)
T PF12900_consen 2 REEIWEILDRAPVGRLAFVD---DG---YPYIVPVNFVYDGGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESA 74 (143)
T ss_dssp HHHHHHHHHH-SEEEEEEEE---TT---EEEEEEEEEEEETTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCG
T ss_pred HHHHHHHHhhCCEEEEEEEe---CC---EEEEEEEEEEEECCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccC
Confidence 36789999999999999986 24 8999999999999999999888778888888788 9998887332 11
Q ss_pred hhhhhcccCCCCcEEEEEEEEEEcCchhHH
Q 021753 87 LAKLLHSIKKIPTRVALSGDIAPLKSEKAQ 116 (308)
Q Consensus 87 l~~~~~~~~~~~~Rvtl~G~~~~v~~~~~~ 116 (308)
+.. +.. -..|++.|+++.+.+++..
T Consensus 75 ~~~---~~~--y~SVi~~G~~~~v~d~~ek 99 (143)
T PF12900_consen 75 CSF---SMN--YRSVIVFGRAEEVEDEEEK 99 (143)
T ss_dssp GGE---EEE--EEEEEEEEEEEEEHSHHHH
T ss_pred CcC---cce--EEEEEEEEEEEEeCCHHHH
Confidence 110 001 2389999999999665443
No 13
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=97.92 E-value=0.00047 Score=60.27 Aligned_cols=97 Identities=19% Similarity=0.134 Sum_probs=76.1
Q ss_pred HHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEecCCeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhh
Q 021753 12 AEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLKKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLL 91 (308)
Q Consensus 12 ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~ 91 (308)
-+.++.+|+.+..|+|++... + .||...+.|+.++|..|+.-+...++..+|..+|.++|.+.+...-.+...+
T Consensus 13 ~~~i~~~l~~~~~~~La~~~~---~---~PyivP~~y~~~~~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~ 86 (166)
T COG3467 13 DEEIDAILAAGRVGRLAFAGD---G---QPYVVPLNYGYEGGHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPF 86 (166)
T ss_pred HHHHHHHHhhCCEEEEEEcCC---C---CcEEEEeEeEEeCCeEEEEeCCcchhhHHhhcCCcEEEEEEccccceecccc
Confidence 456899999999999999752 3 7999999999999998888888889999999999999999987631111111
Q ss_pred -cccCCCCcEEEEEEEEEEcCchhHH
Q 021753 92 -HSIKKIPTRVALSGDIAPLKSEKAQ 116 (308)
Q Consensus 92 -~~~~~~~~Rvtl~G~~~~v~~~~~~ 116 (308)
.+.+ -..|.++|++..+++.+..
T Consensus 87 ~~s~~--y~SVvv~G~~~~l~~~~~k 110 (166)
T COG3467 87 NSSRN--YRSVVVFGRAEELSDLEEK 110 (166)
T ss_pred cCCcc--eEEEEEEeEEEEcCChHHH
Confidence 1112 3389999999999986544
No 14
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=97.87 E-value=0.00018 Score=64.29 Aligned_cols=78 Identities=8% Similarity=0.068 Sum_probs=61.4
Q ss_pred hhCCceEEeeeccCCCCCCCceeeeeeeeE-ecCCeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhhcccCCCC
Q 021753 20 AANWQGRLNTIKADAEGSKESIYTSKVKYM-LKKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLLHSIKKIP 98 (308)
Q Consensus 20 ~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~-~d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~~~~~~~ 98 (308)
......+|||++. +|.|....|-+- .++...+|+-...+.+.++|..||+++|++..+.. .
T Consensus 25 ~~~~~~~lATv~~-----dG~P~~R~V~lr~~~~~~l~f~T~~~S~K~~~l~~np~val~~~~~~~-------------~ 86 (195)
T PRK05679 25 NDPNAMTLATVDE-----DGRPSQRIVLLKGFDERGFVFYTNYESRKGRQLAANPKAALLFPWKSL-------------E 86 (195)
T ss_pred CCCceEEEEeeCC-----CCCEEEEEEEEEEECCCeEEEEeCCCCHHHHHHhhCCcEEEEEecCCC-------------C
Confidence 3456788999863 359999988774 56444888888888999999999999999987643 3
Q ss_pred cEEEEEEEEEEcCchhH
Q 021753 99 TRVALSGDIAPLKSEKA 115 (308)
Q Consensus 99 ~Rvtl~G~~~~v~~~~~ 115 (308)
..|.|.|.++.++++..
T Consensus 87 ~qvrv~G~a~~~~~~~~ 103 (195)
T PRK05679 87 RQVRVEGRVEKVSAEES 103 (195)
T ss_pred EEEEEEEEEEEeCHHHH
Confidence 47888999999986543
No 15
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=97.62 E-value=0.00062 Score=57.89 Aligned_cols=125 Identities=10% Similarity=0.088 Sum_probs=93.0
Q ss_pred HHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEecC--CeEEEEecCCchhhcccccCCCceEEEeCCCCCchhh
Q 021753 12 AEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLKK--GKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAK 89 (308)
Q Consensus 12 ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d~--G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~ 89 (308)
++....+++....|+|+|... .|+|+.=++.|--|. |+.+|.-+..+..+..|..||++++.+....+
T Consensus 7 ~~~~~~~~e~~kv~~l~tv~~-----~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~----- 76 (145)
T COG3871 7 LQALAELLEGSKVGMLATVQE-----NGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDH----- 76 (145)
T ss_pred HHHHHHHHhhCceEEEEEecC-----CCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCC-----
Confidence 456667899999999999863 248988777766663 89999999999999999999999999998765
Q ss_pred hhcccCCCCcEEEEEEEEEEcCchhH-HHHHHHHHHHHhhhhhhhccccccccccccCCccccccCCcchhhhhccCCCe
Q 021753 90 LLHSIKKIPTRVALSGDIAPLKSEKA-QLAAECLKEVMLSEQRVIGESSYTVSGVLSSSNFITTSRNENLKDLLDEREKY 168 (308)
Q Consensus 90 ~~~~~~~~~~Rvtl~G~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rhp~~~~~ld~~~df 168 (308)
..-|.+.|.++.+.+... +..|.-..+.|+. . =. ..+++
T Consensus 77 --------~~fv~v~Gtael~~dra~~d~~W~~~~~~wFe----------------------------~---Gk-edP~l 116 (145)
T COG3871 77 --------DAFVEVSGTAELVEDRAKIDELWTSVLEAWFE----------------------------Q---GK-EDPDL 116 (145)
T ss_pred --------cceEEEEEEEEeeccHHHHHHhhhhhHHHHHh----------------------------c---CC-CCCCe
Confidence 347899999999976432 2223333333331 1 01 27899
Q ss_pred EEEEEEEeEEEEEeCCCc
Q 021753 169 VVYKFNISSCMYIDGHGG 186 (308)
Q Consensus 169 ~~~rL~~~~~~lv~gfG~ 186 (308)
.+.+++++++.|-..-+.
T Consensus 117 ~~Lkv~~e~i~yw~~~~~ 134 (145)
T COG3871 117 TMLKVTAEDIDYWNSGDN 134 (145)
T ss_pred EEEEEchhHhHHHhccCC
Confidence 999999999988765553
No 16
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.0018 Score=54.06 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=98.3
Q ss_pred HHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEec-CCeEEEEecCCc-hhhcccccCCCceEEEeCCCC-Cchhh
Q 021753 13 EKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLK-KGKPFIWVPEKD-MHNVNTIIDERGSFAVASPTP-GPLAK 89 (308)
Q Consensus 13 e~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d-~G~p~~~vs~~a-~Ht~nl~~dpr~SL~v~~~~~-~~l~~ 89 (308)
+++-.++.....-++|... +| .|++.-.-|+.| .-.-+|++++.. .|.+-+..|+++-.+|..+.. .++
T Consensus 3 ~rI~~flkkq~v~Tw~~~~---e~---~~w~asafYvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~-- 74 (145)
T COG3787 3 TRISRFLKKQHVLTWCVQQ---EG---ELWCASAFYVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVAL-- 74 (145)
T ss_pred hHHHHHHHhhheeeeeeec---CC---ceeeeeeEEEEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeee--
Confidence 3455567777666666653 23 899999999999 777888888777 888888899999999887544 333
Q ss_pred hhcccCCCCcEEEEEEEEEEcCchhHHHHHHHHHHHHhhhhhhhccccccccccccCCccccccCCcchhhhhccCCCeE
Q 021753 90 LLHSIKKIPTRVALSGDIAPLKSEKAQLAAECLKEVMLSEQRVIGESSYTVSGVLSSSNFITTSRNENLKDLLDEREKYV 169 (308)
Q Consensus 90 ~~~~~~~~~~Rvtl~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rhp~~~~~ld~~~df~ 169 (308)
-.-|-+.|.+..+..++.+ .++++|.. |+|-++- + .-.
T Consensus 75 --------ikGVQfkge~~~l~~~q~~----~Ark~Y~~-------------------------rfp~akv--d---~a~ 112 (145)
T COG3787 75 --------IKGVQFKGEISRLSGEQSD----AARKAYNR-------------------------RFPVAKV--D---SAP 112 (145)
T ss_pred --------eeeeeeeeeehhhhcchHH----HHHHHHhc-------------------------cCchhhc--c---cCc
Confidence 3578889999999877653 48999998 8887642 2 257
Q ss_pred EEEEEEeEEEEEe---CCCce-eeech
Q 021753 170 VYKFNISSCMYID---GHGGT-HEVDL 192 (308)
Q Consensus 170 ~~rL~~~~~~lv~---gfG~a-~~v~~ 192 (308)
+|.|+++.+.+.| |||+- +|...
T Consensus 113 vwqleL~~ikftdNaLG~~kklew~r~ 139 (145)
T COG3787 113 VWQLELDEIKFTDNALGFGKKLEWLRG 139 (145)
T ss_pred eEEeeeeeEEeecccccccceEEEecc
Confidence 9999999999997 78864 56543
No 17
>PRK06733 hypothetical protein; Provisional
Probab=97.32 E-value=0.0072 Score=52.07 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeE--ecCCeEEEEecCCchhhcccccCCCceEEEeCCCCCc
Q 021753 9 LTLAEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYM--LKKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGP 86 (308)
Q Consensus 9 ~s~ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~--~d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~ 86 (308)
+..-+....+++......|+|.+. .+|.|+.+....+ +|+.+..|.+..++....||+.||++.|.+..++.
T Consensus 7 ~~Lt~el~~~L~~~~~~~laTv~k----edG~Pnv~~Iswv~a~d~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~~-- 80 (151)
T PRK06733 7 PTLTEDLVQLLRKERIVTLATTDF----EKQVPNVSAISWVYAVSKTSIRFAVDQRSRIVENIRHNPGVVLTIIANES-- 80 (151)
T ss_pred hhcCHHHHHHHcCCceEEEEEEcc----CCCceeEEEEEEEEEcCCCEEEEEEccCcHhHHHHhhCCcEEEEEEeCCc--
Confidence 445567888999988899999973 2359999987654 56899999999999999999999999999998643
Q ss_pred hhhhhcccCCCCcEEEEEEEEEEcCchhHHHHHHHHHHHHhhhhhhhccccccccccccCCccccccCCcchhhhhccCC
Q 021753 87 LAKLLHSIKKIPTRVALSGDIAPLKSEKAQLAAECLKEVMLSEQRVIGESSYTVSGVLSSSNFITTSRNENLKDLLDERE 166 (308)
Q Consensus 87 l~~~~~~~~~~~~Rvtl~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rhp~~~~~ld~~~ 166 (308)
-..+.|.++.+.+. +. ..| -
T Consensus 81 -------------~yqIkG~a~i~~e~--------ie------------------------------~vp---------l 100 (151)
T PRK06733 81 -------------VYSISGAAEILTDR--------ME------------------------------GVP---------L 100 (151)
T ss_pred -------------EEEEEEEEEEEeee--------cc------------------------------ccc---------c
Confidence 26678888777521 10 112 1
Q ss_pred CeEEEEEEEeEEEEEeCCCceeeechhhhc
Q 021753 167 KYVVYKFNISSCMYIDGHGGTHEVDLKDVQ 196 (308)
Q Consensus 167 df~~~rL~~~~~~lv~gfG~a~~v~~~d~~ 196 (308)
..++|.+++++++=+=.+| +.......|.
T Consensus 101 k~s~vei~I~eVrdv~FyG-a~i~~~p~~~ 129 (151)
T PRK06733 101 KLALIEVNVEEVRDVMFYG-AKIATEPTYE 129 (151)
T ss_pred eEEEEEEEEEEEEEeeecc-ceeccCCcee
Confidence 3689999999999999999 4444333443
No 18
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=97.30 E-value=0.0061 Score=55.48 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=60.0
Q ss_pred hCCceEEeeeccCCCCCCCceeeeeeeeEe-cCCeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhhcccCCCCc
Q 021753 21 ANWQGRLNTIKADAEGSKESIYTSKVKYML-KKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLLHSIKKIPT 99 (308)
Q Consensus 21 ~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~-d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~~~~~~~~ 99 (308)
.....+|+|++. +|.|.+=.|-+-. +++..+|+-...+.+..+|..||+++|++..+.. .-
T Consensus 48 ~~~~~~LaTvd~-----~G~P~~R~v~lr~~~~~~l~F~T~~~S~K~~eL~~np~v~l~f~~~~~-------------~~ 109 (217)
T TIGR00558 48 EPNAMTLSTVDE-----SGRPSSRMVLLKELDERGFVFYTNYGSRKGHQIETNPNAALVFFWPDL-------------ER 109 (217)
T ss_pred CCceEEEEEECC-----CCCEEEEEEEEEEECCCcEEEEECCCChHHHHHHhCCcEEEEEEeCCC-------------CE
Confidence 345678999863 2489988766643 4566889888889999999999999999987543 34
Q ss_pred EEEEEEEEEEcCchhH
Q 021753 100 RVALSGDIAPLKSEKA 115 (308)
Q Consensus 100 Rvtl~G~~~~v~~~~~ 115 (308)
.|.|.|.+..++++..
T Consensus 110 qvrv~G~a~~~~~~~~ 125 (217)
T TIGR00558 110 QVRVEGKVEKLPREES 125 (217)
T ss_pred EEEEEEEEEECCHHHH
Confidence 7889999999876543
No 19
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=96.75 E-value=0.034 Score=56.13 Aligned_cols=76 Identities=11% Similarity=0.017 Sum_probs=58.5
Q ss_pred hCCceEEeeeccCCCCCCCceeeeeeeeE-ecCCeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhhcccCCCCc
Q 021753 21 ANWQGRLNTIKADAEGSKESIYTSKVKYM-LKKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLLHSIKKIPT 99 (308)
Q Consensus 21 ~~~~~~LaT~~~~~~G~~g~P~~S~v~y~-~d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~~~~~~~~ 99 (308)
..+..+|||++. +|.|..-.|-+- .+...++|+-...++..++|..||+++|++.-+.- .-
T Consensus 288 ep~am~LATvd~-----~G~P~~R~VlLk~~d~~g~~F~Tn~~S~K~~eL~~Np~aal~F~w~~~-------------~r 349 (462)
T PLN03049 288 EPNAMTLATAGE-----DGRPSARIVLLKGVDKRGFVWYTNYDSRKAHELSANPKASLVFYWDGL-------------HR 349 (462)
T ss_pred CCCeeEEEEECC-----CCCeeEEEEEEeEEcCCcEEEEECCCCHHHHHHhhCCcEEEEeecCCC-------------CE
Confidence 445678999863 348998776442 45335588888889999999999999999987543 34
Q ss_pred EEEEEEEEEEcCchh
Q 021753 100 RVALSGDIAPLKSEK 114 (308)
Q Consensus 100 Rvtl~G~~~~v~~~~ 114 (308)
.|.|.|.++.+++++
T Consensus 350 QvRv~G~a~~~~~~~ 364 (462)
T PLN03049 350 QVRVEGSVEKVSEEE 364 (462)
T ss_pred EEEEEEEEEECCHHH
Confidence 788999999998554
No 20
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=96.34 E-value=0.062 Score=48.34 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=60.0
Q ss_pred HhhCCceEEeeeccCCCCCCCceeeeeeeeE-ecCCeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhhcccCCC
Q 021753 19 LAANWQGRLNTIKADAEGSKESIYTSKVKYM-LKKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLLHSIKKI 97 (308)
Q Consensus 19 l~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~-~d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~~~~~~ 97 (308)
+....-.+|||++. +|.|.+=+|-.- +|..-++|+-.-.++..+.|..||.+++++.=.. |
T Consensus 43 ~~ePnAm~lATvd~-----~G~P~~R~VLLK~~DerGfvFyTN~~S~Kg~eLa~np~Aal~F~W~~---L---------- 104 (214)
T COG0259 43 VNEPNAMTLATVDE-----QGRPSSRIVLLKELDERGFVFYTNYGSRKGRELAANPYAALLFPWKE---L---------- 104 (214)
T ss_pred cCCCceeEEEeecC-----CCCceeeEEEecccCCCcEEEEeccCCcchhhHhhCcceeEEecchh---c----------
Confidence 44445678999874 348998665443 4455688888888999999999999999987532 2
Q ss_pred CcEEEEEEEEEEcCchhH
Q 021753 98 PTRVALSGDIAPLKSEKA 115 (308)
Q Consensus 98 ~~Rvtl~G~~~~v~~~~~ 115 (308)
...|-|.|.+++|++++.
T Consensus 105 ~RQVrv~G~ve~vs~ees 122 (214)
T COG0259 105 ERQVRVEGRVERVSDEES 122 (214)
T ss_pred cceEEEeeeeeeCCHHHH
Confidence 347889999999987764
No 21
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.71 Score=38.39 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=83.4
Q ss_pred HHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEecC-CeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhhcc
Q 021753 15 CKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLKK-GKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLLHS 93 (308)
Q Consensus 15 aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d~-G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~~ 93 (308)
+-.+|..+.++.|||+. . |.|-.-...+++.+ +..||+-...-.-.+.|+.||.+++.=..-...
T Consensus 4 ~leFLken~~~~laTve---~---gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kdg~-------- 69 (132)
T COG5015 4 PLEFLKENKSVALATVE---D---GKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKDGV-------- 69 (132)
T ss_pred HHHHHHhCCcEEEEEcc---C---CCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEecCCce--------
Confidence 45678899999999985 2 37777777777774 556655554448888999999999866553332
Q ss_pred cCCCCcEEEEEEEEEEcCchhHHHHHHHHHHHHhhhhhhhccccccccccccCCccccccCCcchhhhhc--cCCCeEEE
Q 021753 94 IKKIPTRVALSGDIAPLKSEKAQLAAECLKEVMLSEQRVIGESSYTVSGVLSSSNFITTSRNENLKDLLD--EREKYVVY 171 (308)
Q Consensus 94 ~~~~~~Rvtl~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rhp~~~~~ld--~~~df~~~ 171 (308)
=|-|+|.++-+++-+ +++..+. ..|....... +.+-|.+|
T Consensus 70 ------~vrlrg~a~f~~nie-------lkk~ale-------------------------~yP~Lkeiy~tddnpifevf 111 (132)
T COG5015 70 ------MVRLRGRAEFVENIE-------LKKLALE-------------------------IYPVLKEIYPTDDNPIFEVF 111 (132)
T ss_pred ------EEEEeeeEEeccchH-------HHHHHhh-------------------------hchhhHhhccCCCCCEEEEE
Confidence 223789999997644 5566665 6666665554 34568899
Q ss_pred EEEEeEEEEEeCCC
Q 021753 172 KFNISSCMYIDGHG 185 (308)
Q Consensus 172 rL~~~~~~lv~gfG 185 (308)
.|+..++..-+.-|
T Consensus 112 yld~~e~~m~df~g 125 (132)
T COG5015 112 YLDSGEGEMYDFSG 125 (132)
T ss_pred EEeeccEEEEEecC
Confidence 88887777666555
No 22
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=94.91 E-value=0.52 Score=38.60 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=55.7
Q ss_pred ceEEeeeccCCCCCCCceeeeeeeeEecCCeEEEEecCC-----chhhcccccCCCceEEEeCCCCCchhhhhcccCCCC
Q 021753 24 QGRLNTIKADAEGSKESIYTSKVKYMLKKGKPFIWVPEK-----DMHNVNTIIDERGSFAVASPTPGPLAKLLHSIKKIP 98 (308)
Q Consensus 24 ~~~LaT~~~~~~G~~g~P~~S~v~y~~d~G~p~~~vs~~-----a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~~~~~~~ 98 (308)
...|.|..+. .|.|+.+.+.|+.++|..++..|.- ..-.+||.++|++.+.+..
T Consensus 9 ~~lL~t~GRk----SG~~r~tpl~~~~~~~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~~g----------------- 67 (113)
T TIGR00026 9 VLLLTTTGRK----SGKPRTTPVTYVRHDPGVLIVASNGGAPRHPDWYKNLKANPRVRVRVGG----------------- 67 (113)
T ss_pred EEEEEECCCC----CCcEEEEEEEEEEECCEEEEEEecCCCCCCCHHHHHhhhCCcEEEEECC-----------------
Confidence 5667776542 2599999999999988887775553 4568999999999988733
Q ss_pred cEEEEEEEEEEcCchhHHHHHHHHHHHHhh
Q 021753 99 TRVALSGDIAPLKSEKAQLAAECLKEVMLS 128 (308)
Q Consensus 99 ~Rvtl~G~~~~v~~~~~~~~~~~~~~~~~~ 128 (308)
+ +..+.+..+++++.. ++..++..
T Consensus 68 -~-~~~~~ar~v~~~e~~----~~~~~~~~ 91 (113)
T TIGR00026 68 -K-TFVATARLVSGDERD----QLWAGVVR 91 (113)
T ss_pred -E-EEEEEEEECCchhHH----HHHHHHHH
Confidence 1 246788888776654 34555555
No 23
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=94.65 E-value=0.49 Score=48.75 Aligned_cols=75 Identities=8% Similarity=0.026 Sum_probs=57.9
Q ss_pred CceEEeeeccCCCCCCCceeeeeeeeE-ecCCeEEEEecCCchhhcccccCCCceEEEeCCCCCchhhhhcccCCCCcEE
Q 021753 23 WQGRLNTIKADAEGSKESIYTSKVKYM-LKKGKPFIWVPEKDMHNVNTIIDERGSFAVASPTPGPLAKLLHSIKKIPTRV 101 (308)
Q Consensus 23 ~~~~LaT~~~~~~G~~g~P~~S~v~y~-~d~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~~~~~~~~Rv 101 (308)
...+|||++. +|.|..=.|-+- .|...++|+-...+...+.|..||+++|++.-+.- ...|
T Consensus 372 ~Am~LATv~~-----~G~P~~RtVlLk~~d~~g~~F~Tn~~S~K~~el~~Np~aal~F~w~~l-------------~rQV 433 (544)
T PLN02918 372 NAMALSTANK-----DGKPSSRMVLLKGVDKNGFVWYTNYESQKGSDLSENPSAALLFYWEEL-------------NRQV 433 (544)
T ss_pred ccceEEeeCC-----CCCeeeEEEEEeEEcCCceEEEECCCChhHHHHHhCCcEEEEeeeccc-------------cEEE
Confidence 4567999863 348988766543 34455668888889999999999999999987543 4478
Q ss_pred EEEEEEEEcCchhH
Q 021753 102 ALSGDIAPLKSEKA 115 (308)
Q Consensus 102 tl~G~~~~v~~~~~ 115 (308)
.|.|.++++++++.
T Consensus 434 Ri~G~v~~~~~~es 447 (544)
T PLN02918 434 RVEGSVQKVPESES 447 (544)
T ss_pred EEEEEEEECCHHHH
Confidence 89999999987653
No 24
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=94.00 E-value=0.44 Score=40.07 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=39.6
Q ss_pred ceEEeeeccCCCCCCCceeeeeeeeEecCCeEEEEec-----CCchhhcccccCCCceEEEe
Q 021753 24 QGRLNTIKADAEGSKESIYTSKVKYMLKKGKPFIWVP-----EKDMHNVNTIIDERGSFAVA 80 (308)
Q Consensus 24 ~~~LaT~~~~~~G~~g~P~~S~v~y~~d~G~p~~~vs-----~~a~Ht~nl~~dpr~SL~v~ 80 (308)
...|.|.... . |.|+.+.+.|..++|+.++..+ ....=.+||.++|.|.+.+.
T Consensus 27 ~~lLtt~GRk-S---G~~r~tpl~~~~~g~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~ 84 (132)
T PF04075_consen 27 VLLLTTTGRK-S---GRPRRTPLVYVRDGGRLVVVASNGGAPRHPDWYRNLRANPEVTVEVG 84 (132)
T ss_dssp EEEEEEE-TT-T----SEEEEEEEEEEETTEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEET
T ss_pred EEEEEECCCC-C---CCeEEEEEEEEEeCCEEEEEEccCCCCCCChhHHhhhhCCcEEEEEC
Confidence 4667776542 2 5999999999988999888888 34578899999999988764
No 25
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=91.33 E-value=4.2 Score=35.60 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEec-----CCeEEEEecCCchhhcccccCCCceEEEeCCC
Q 021753 9 LTLAEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLK-----KGKPFIWVPEKDMHNVNTIIDERGSFAVASPT 83 (308)
Q Consensus 9 ~s~ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d-----~G~p~~~vs~~a~Ht~nl~~dpr~SL~v~~~~ 83 (308)
.+..+..+.+++++..|+|.|... + .|.+|-+||.++ .|..+-.|+.-..+.+.+..+..+-+.|..+.
T Consensus 9 ~~d~~~l~~~i~~~pfa~Lvt~~~---~---~~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~ 82 (169)
T PF04299_consen 9 EEDPEELRAFIRAHPFATLVTNGD---G---GPVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPH 82 (169)
T ss_dssp ---HCHHHHHHHHS-EEEEEEEET---T---EEEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEE
T ss_pred cCCHHHHHHHHHhCCcEEEEEcCC---C---CcceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCC
Confidence 355667899999999999999642 3 599999999987 35677777777788888887888877776543
Q ss_pred C----Cch--hhhhccc--CCCCcEEEEEEEEEEcCchh
Q 021753 84 P----GPL--AKLLHSI--KKIPTRVALSGDIAPLKSEK 114 (308)
Q Consensus 84 ~----~~l--~~~~~~~--~~~~~Rvtl~G~~~~v~~~~ 114 (308)
. ... ..--+.. =|.-.-|-+.|++..+++.+
T Consensus 83 aYISPsWYp~k~~~~~~VPTWNY~aVh~~G~~~~~~d~~ 121 (169)
T PF04299_consen 83 AYISPSWYPTKAEHGKVVPTWNYAAVHAYGTVRIIDDPD 121 (169)
T ss_dssp EEE-CCCS----STTS---EEEEEEEEEEEEEEE---HH
T ss_pred eeECchhhcccCcCCCCCCCcCEEEEEEEEEEEEEeCHH
Confidence 2 212 0000000 13356889999999996544
No 26
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=85.71 E-value=2.6 Score=38.13 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=52.8
Q ss_pred ceEEeeeccCCCCCCCceeeeeeeeE-ecCCeEEEEecC-CchhhcccccCCCceEEEeCCCCCchhhhhcccCCCCcEE
Q 021753 24 QGRLNTIKADAEGSKESIYTSKVKYM-LKKGKPFIWVPE-KDMHNVNTIIDERGSFAVASPTPGPLAKLLHSIKKIPTRV 101 (308)
Q Consensus 24 ~~~LaT~~~~~~G~~g~P~~S~v~y~-~d~G~p~~~vs~-~a~Ht~nl~~dpr~SL~v~~~~~~~l~~~~~~~~~~~~Rv 101 (308)
..+|+|+.. +|.|..=+|-|- ++.-.++|+..- -++...||..||.++|++.-+. + ...|
T Consensus 58 am~LsT~~~-----d~rvssRmvLlKgl~~~gf~fytn~~~srk~kdL~~NP~Aal~Fyw~~---l----------~rQV 119 (228)
T KOG2586|consen 58 AMTLSTADK-----DGRVSSRMVLLKGLDHDGFVFYTNYGTSRKGKDLQENPNAALLFYWED---L----------NRQV 119 (228)
T ss_pred heeehhccc-----cCCcceeeeeeecccCCCeEEEeeccccccccccccCCcceEEEeehh---c----------ccee
Confidence 356888753 347877666664 553335566655 6788999999999999998642 2 3377
Q ss_pred EEEEEEEEcCchhH
Q 021753 102 ALSGDIAPLKSEKA 115 (308)
Q Consensus 102 tl~G~~~~v~~~~~ 115 (308)
-+.|.++.+++++.
T Consensus 120 RveG~ve~l~~ee~ 133 (228)
T KOG2586|consen 120 RVEGIVEKLPREEA 133 (228)
T ss_pred EEEeccccCCHHHH
Confidence 88999999987754
No 27
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=50.38 E-value=25 Score=30.95 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=45.5
Q ss_pred HHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEec-C-CeEEEEecCCc--hhhcccccCCCceEEEeCC
Q 021753 14 KCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLK-K-GKPFIWVPEKD--MHNVNTIIDERGSFAVASP 82 (308)
Q Consensus 14 ~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d-~-G~p~~~vs~~a--~Ht~nl~~dpr~SL~v~~~ 82 (308)
.+|.+++....+.|+|.+.+ | .|-....+|+.. | +.+.+.+.++. .--+||..||+.++-....
T Consensus 33 ~~~e~~~~~~~~~laT~d~d--G---~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~ 100 (173)
T COG3576 33 HYREFIQTSQLAALATVDKD--G---PPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILR 100 (173)
T ss_pred hhhhhhccccEEEEEEeccC--C---CCCcCccchhhccCCCCceEEeCcccccccccccccCccceeEEecc
Confidence 45666677999999999753 4 777777788654 3 66666666655 3334588999999977765
No 28
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=46.94 E-value=1.1e+02 Score=24.26 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=38.4
Q ss_pred hhCCceEEeeeccCCCCCCCceeeeeeee-Eec-C-----CeEEEEecCCchhhcccc-cCCCceEEEeCCCC
Q 021753 20 AANWQGRLNTIKADAEGSKESIYTSKVKY-MLK-K-----GKPFIWVPEKDMHNVNTI-IDERGSFAVASPTP 84 (308)
Q Consensus 20 ~~~~~~~LaT~~~~~~G~~g~P~~S~v~y-~~d-~-----G~p~~~vs~~a~Ht~nl~-~dpr~SL~v~~~~~ 84 (308)
...++.+|||++ ..+| .|..=.|-| ... + ....|+--.-+.....|. .||++++.+..+..
T Consensus 18 ~~~~~~~LATv~-~~~~---~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~~~~~ 86 (100)
T PF12766_consen 18 HPFRYFQLATVD-PPDG---SPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFWFPET 86 (100)
T ss_dssp CGGGCEEEEEEE--TTT---EEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEEECCC
T ss_pred CCCceeEEEEec-CCCC---CCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEEeCCc
Confidence 356789999997 2123 676643322 122 2 235555555559999999 99999999998765
No 29
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=46.43 E-value=88 Score=28.38 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHhhCCceEEeeeccCCCCCCCceeeeeeeeEec--CCeEEEEecCCc---hhhcccccCCCceEEEeCCC
Q 021753 9 LTLAEKCKNILAANWQGRLNTIKADAEGSKESIYTSKVKYMLK--KGKPFIWVPEKD---MHNVNTIIDERGSFAVASPT 83 (308)
Q Consensus 9 ~s~ae~aRtll~~~~~~~LaT~~~~~~G~~g~P~~S~v~y~~d--~G~p~~~vs~~a---~Ht~nl~~dpr~SL~v~~~~ 83 (308)
-+..+....+++....|+|.|... +.|+++-.||.++ +|.-+.+.+.++ .|.+.+.....|=.++..+.
T Consensus 9 ~~d~~~L~a~ir~~pfgtlvt~~~------~~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqgpd 82 (209)
T COG2808 9 EEDPEVLHALIRAHPFGTLVTSGG------GGPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQGPD 82 (209)
T ss_pred cCCHHHHHHHHHhCCceEEEeccC------CccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeCCC
Confidence 456778899999999999999742 3799999999998 545555555555 66666554444434444332
Q ss_pred CCchh--hhhcc---c-----CCCCcEEEEEEEEEEcCchh
Q 021753 84 PGPLA--KLLHS---I-----KKIPTRVALSGDIAPLKSEK 114 (308)
Q Consensus 84 ~~~l~--~~~~~---~-----~~~~~Rvtl~G~~~~v~~~~ 114 (308)
... .|+.+ - -|.-.-|-.-|.+..+.|++
T Consensus 83 --AYISP~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~ 121 (209)
T COG2808 83 --AYISPAWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDE 121 (209)
T ss_pred --cccCcccccccccCCCcCCCcceEEEEEecceeeeccHH
Confidence 222 12221 0 13345778889999998764
No 30
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []. The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].
Probab=33.24 E-value=61 Score=22.61 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=25.5
Q ss_pred CCCcCCCHHHHHHHHHHHHHHHHhhhccC
Q 021753 276 FKEEAHDVESFCSQLAQMEEEVVRKVSGF 304 (308)
Q Consensus 276 F~~pv~~~~~~~~~l~~l~~~A~~~~~~~ 304 (308)
|..+.+|...+|..+++-.+.+.++|++|
T Consensus 22 ~~~~~~d~~~~r~~~~~~~r~~e~aL~~l 50 (51)
T PF10406_consen 22 YNERETDPKKIREKAAEQSRLAEKALRKL 50 (51)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999899998888874
Done!