Query 021755
Match_columns 308
No_of_seqs 197 out of 1426
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 1.2E-47 2.5E-52 351.5 16.7 209 2-213 3-212 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.8 3.7E-21 8.1E-26 150.7 7.0 86 128-213 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 5.8E-21 1.3E-25 149.6 6.8 86 7-93 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 2.9E-14 6.3E-19 131.4 6.0 89 5-94 125-213 (243)
5 COG4095 Uncharacterized conser 99.3 5.3E-12 1.2E-16 98.8 6.1 83 126-211 5-87 (89)
6 COG4095 Uncharacterized conser 99.2 5.3E-11 1.2E-15 93.3 8.1 85 1-89 1-85 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.5 1.1E-05 2.3E-10 74.0 17.0 189 5-202 4-213 (220)
8 PF04193 PQ-loop: PQ loop repe 97.9 1.7E-05 3.8E-10 57.7 5.1 57 127-186 3-59 (61)
9 PF04193 PQ-loop: PQ loop repe 97.8 5.1E-05 1.1E-09 55.2 6.2 55 6-63 3-57 (61)
10 KOG3211 Predicted endoplasmic 97.3 0.003 6.4E-08 57.5 10.5 198 4-215 30-229 (230)
11 PRK01021 lpxB lipid-A-disaccha 96.7 0.031 6.6E-07 58.4 13.9 189 6-211 11-221 (608)
12 KOG2913 Predicted membrane pro 96.7 0.041 8.8E-07 51.9 13.6 201 7-212 8-249 (260)
13 PHA02246 hypothetical protein 95.7 0.9 2E-05 39.9 15.2 163 13-195 10-176 (192)
14 TIGR00951 2A43 Lysosomal Cysti 95.4 0.02 4.3E-07 52.6 4.6 49 127-178 5-53 (220)
15 PF10688 Imp-YgjV: Bacterial i 94.8 0.42 9.1E-06 41.9 10.8 150 4-201 4-153 (163)
16 PF03650 MPC: Uncharacterised 94.3 0.013 2.8E-07 49.0 0.3 63 154-216 39-103 (119)
17 smart00679 CTNS Repeated motif 92.0 0.15 3.3E-06 32.1 2.5 27 22-48 2-28 (32)
18 smart00679 CTNS Repeated motif 90.7 0.19 4.1E-06 31.6 1.9 29 143-171 2-30 (32)
19 PF03650 MPC: Uncharacterised 86.9 0.25 5.5E-06 41.4 0.7 60 33-92 39-99 (119)
20 KOG1589 Uncharacterized conser 82.4 0.74 1.6E-05 38.0 1.5 56 33-89 43-100 (118)
21 PHA02246 hypothetical protein 81.6 11 0.00024 33.2 8.5 65 13-77 114-178 (192)
22 KOG1589 Uncharacterized conser 80.2 0.94 2E-05 37.4 1.4 55 155-209 44-100 (118)
23 PF07578 LAB_N: Lipid A Biosyn 79.0 3.9 8.4E-05 31.4 4.3 54 145-199 14-67 (72)
24 KOG2489 Transmembrane protein 74.9 31 0.00067 35.7 10.6 167 16-182 329-522 (592)
25 PF07578 LAB_N: Lipid A Biosyn 72.8 7.7 0.00017 29.8 4.5 60 16-78 6-66 (72)
26 KOG3145 Cystine transporter Cy 71.9 9.5 0.00021 37.0 5.9 31 130-163 268-298 (372)
27 PF07857 DUF1632: CEO family ( 71.2 9.2 0.0002 36.1 5.6 54 159-212 80-139 (254)
28 COG3952 Predicted membrane pro 70.2 9.1 0.0002 31.5 4.6 59 152-210 48-106 (113)
29 KOG3211 Predicted endoplasmic 66.2 14 0.0003 34.1 5.4 71 19-89 153-223 (230)
30 PF10688 Imp-YgjV: Bacterial i 62.7 16 0.00035 31.9 5.2 37 45-82 118-154 (163)
31 KOG2913 Predicted membrane pro 62.7 16 0.00035 34.6 5.4 55 126-183 9-63 (260)
32 KOG3106 ER lumen protein retai 60.2 37 0.00081 31.0 7.0 59 142-205 129-191 (212)
33 KOG2890 Predicted membrane pro 58.3 1.5E+02 0.0032 29.0 11.1 134 68-215 76-223 (326)
34 PF06027 DUF914: Eukaryotic pr 57.9 1.4E+02 0.003 29.3 11.1 54 151-209 253-307 (334)
35 TIGR00910 2A0307_GadC glutamat 52.9 83 0.0018 32.1 9.1 14 169-182 409-422 (507)
36 PF15102 TMEM154: TMEM154 prot 48.2 23 0.00049 30.8 3.5 33 185-217 59-91 (146)
37 PRK05771 V-type ATP synthase s 46.2 3.8E+02 0.0083 28.3 13.9 49 20-79 325-373 (646)
38 PF05297 Herpes_LMP1: Herpesvi 44.6 7.1 0.00015 37.7 -0.1 136 67-213 52-189 (381)
39 PF13965 SID-1_RNA_chan: dsRNA 44.5 4.1E+02 0.0088 28.1 13.9 49 123-177 451-499 (570)
40 KOG2532 Permease of the major 40.5 1.4E+02 0.0031 30.4 8.5 138 6-146 263-412 (466)
41 KOG4314 Predicted carbohydrate 39.7 94 0.002 28.8 6.3 56 121-176 127-183 (290)
42 COG5196 ERD2 ER lumen protein 39.7 2.9E+02 0.0062 25.0 12.5 64 142-205 130-193 (214)
43 PF05434 Tmemb_9: TMEM9; Inte 38.0 39 0.00085 29.4 3.5 42 221-262 95-136 (149)
44 PHA03049 IMV membrane protein; 35.4 35 0.00076 25.8 2.4 25 193-217 8-32 (68)
45 PF05977 MFS_3: Transmembrane 33.9 78 0.0017 32.7 5.5 22 244-265 436-457 (524)
46 PF01528 Herpes_glycop: Herpes 33.1 2.9E+02 0.0064 27.6 9.1 44 129-175 272-316 (374)
47 PF05602 CLPTM1: Cleft lip and 32.4 1E+02 0.0022 31.1 5.9 70 11-80 305-374 (438)
48 TIGR00341 conserved hypothetic 30.3 2.3E+02 0.0049 27.8 7.7 37 175-211 256-292 (325)
49 PRK01021 lpxB lipid-A-disaccha 28.0 3.5E+02 0.0076 28.9 9.1 73 7-85 142-215 (608)
50 PF03547 Mem_trans: Membrane t 27.8 1.8E+02 0.004 27.9 6.7 198 40-268 5-207 (385)
51 PF06570 DUF1129: Protein of u 26.5 4.2E+02 0.0092 23.6 8.4 49 166-214 151-203 (206)
52 KOG2325 Predicted transporter/ 24.9 1.9E+02 0.0041 29.9 6.4 22 190-211 210-231 (488)
53 KOG3618 Adenylyl cyclase [Gene 24.4 5.8E+02 0.013 28.5 9.9 19 45-63 86-104 (1318)
54 PF09586 YfhO: Bacterial membr 23.9 9.3E+02 0.02 25.9 14.3 27 10-39 221-247 (843)
55 PF11085 YqhR: Conserved membr 23.8 4.1E+02 0.0089 23.8 7.4 33 29-61 7-41 (173)
56 PRK10642 proline/glycine betai 23.7 5.6E+02 0.012 25.4 9.5 16 196-211 417-432 (490)
57 KOG4193 G protein-coupled rece 23.4 9.2E+02 0.02 25.7 12.7 71 128-202 474-557 (610)
58 COG3952 Predicted membrane pro 23.4 3.3E+02 0.0072 22.6 6.3 51 35-87 52-103 (113)
59 PF03348 Serinc: Serine incorp 22.9 6.7E+02 0.015 25.4 9.8 15 75-89 156-170 (429)
60 PF07857 DUF1632: CEO family ( 22.6 1.5E+02 0.0033 27.9 4.8 66 5-71 180-254 (254)
61 PF08733 PalH: PalH/RIM21; In 21.3 5.5E+02 0.012 25.2 8.7 50 13-62 168-218 (348)
62 PF08693 SKG6: Transmembrane a 20.7 1E+02 0.0022 21.0 2.4 20 193-212 21-40 (40)
63 PF05250 UPF0193: Uncharacteri 20.4 44 0.00095 30.8 0.7 27 247-273 37-64 (212)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=1.2e-47 Score=351.54 Aligned_cols=209 Identities=46% Similarity=0.875 Sum_probs=186.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHH
Q 021755 2 ASLSFFVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIY 81 (308)
Q Consensus 2 ~~~~~ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iy 81 (308)
+....++|.+|+++++++|++|+|+++||+|+||+|++++.||+++++||++|+.||++++|+..++++|++|++++++|
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Y 82 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVY 82 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998884488999999999999999
Q ss_pred HHhhheecCCcchhHHHHHHHHHHHHHHHHHHhhhheeecc-ccchhhhhHHHHHHHHHHhhcchhhhhhhhccCccccc
Q 021755 82 VSLYLIYAPKDKKVKTAKLVAILDVGFLGAVIAITLLAMHG-NLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYM 160 (308)
Q Consensus 82 l~vy~~Y~~~k~k~~~~~~v~~~~~~~l~~~~lv~~~~~~~-~~~~~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~m 160 (308)
+..|+.|+++|+..+.. ..+..+++++.++++....++ +.+.+.+|++|++++++||+|||..|++||||||+|+|
T Consensus 83 i~~f~~ya~~k~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~m 159 (243)
T KOG1623|consen 83 ISIFLYYAPKKKTVKIV---LALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYM 159 (243)
T ss_pred HHHHheecCchheeEee---ehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeee
Confidence 99999999988743221 112233444444555555554 55689999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhHHHHhhhhcccCeeeEechhHHHHHHHHHHhhheeecCCCC
Q 021755 161 PFLLSFFLFLNAGVWSVYSVLVKDIYIGVPNAVGFVLGAAQLILYMIYKNKTP 213 (308)
Q Consensus 161 p~~~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG~~l~~~Ql~l~~iY~~~~~ 213 (308)
|++++++.++++..|++||++++|.||.+||++|++++++|+++|+.||+++.
T Consensus 160 Pf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~ 212 (243)
T KOG1623|consen 160 PFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTE 212 (243)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcc
Confidence 99999999999999999999999999999999999999999999999998873
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.84 E-value=3.7e-21 Score=150.70 Aligned_cols=86 Identities=37% Similarity=0.637 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHhhcchhhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhcccCeeeEechhHHHHHHHHHHhhhee
Q 021755 128 FVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGVPNAVGFVLGAAQLILYMI 207 (308)
Q Consensus 128 ~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG~~l~~~Ql~l~~i 207 (308)
++|++|.+.++++|+||++++++++|+|+++++|+.+.++.++||++|+.||++++|++++++|++|++++.+|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 021755 208 YKNKTP 213 (308)
Q Consensus 208 Y~~~~~ 213 (308)
|+++|+
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 999875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.83 E-value=5.8e-21 Score=149.60 Aligned_cols=86 Identities=33% Similarity=0.627 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHHhhh
Q 021755 7 FVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYL 86 (308)
Q Consensus 7 ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~vy~ 86 (308)
++|++|++.++++++||++++++++|+|+++++|+.|++++++||.+|+.||++++| .+++.+|++|++++++|+.+|+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d-~~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILIND-WPIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCC-eeEEeeHHHHHHHHHHHHhheE
Confidence 579999999999999999999999999999999999999999999999999999998 7999999999999999999999
Q ss_pred eecCCcc
Q 021755 87 IYAPKDK 93 (308)
Q Consensus 87 ~Y~~~k~ 93 (308)
+|+++||
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9998775
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.49 E-value=2.9e-14 Score=131.44 Aligned_cols=89 Identities=25% Similarity=0.438 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHHh
Q 021755 5 SFFVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSL 84 (308)
Q Consensus 5 ~~ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~v 84 (308)
.+.+|++|.+++++||+||+..+++++|+||+|.+++....+.++++..|++||++.+| ++|..+|++|++++++|+.+
T Consensus 125 ~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D-~~IaipN~iG~~l~~~QL~L 203 (243)
T KOG1623|consen 125 VSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKD-FFIAIPNVLGFLLGLIQLIL 203 (243)
T ss_pred eeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhcC-eEEEcccHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999877778999999999999999987 88999999999999999999
Q ss_pred hheecCCcch
Q 021755 85 YLIYAPKDKK 94 (308)
Q Consensus 85 y~~Y~~~k~k 94 (308)
|++|++++.+
T Consensus 204 y~~y~~~~~~ 213 (243)
T KOG1623|consen 204 YFKYPKTTEK 213 (243)
T ss_pred hhhcCCCccc
Confidence 9999876533
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=5.3e-12 Score=98.84 Aligned_cols=83 Identities=23% Similarity=0.445 Sum_probs=78.0
Q ss_pred hhhhhHHHHHHHHHHhhcchhhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhcccCeeeEechhHHHHHHHHHHhhh
Q 021755 126 LTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGVPNAVGFVLGAAQLILY 205 (308)
Q Consensus 126 ~~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG~~l~~~Ql~l~ 205 (308)
.+++|++|+.++.++| |||+.+++|+||++++++++........++|++||++++|.++.+.|.+++.++..-+...
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 4678999999999999 8999999999999999999999999999999999999999999999999999999988888
Q ss_pred eeecCC
Q 021755 206 MIYKNK 211 (308)
Q Consensus 206 ~iY~~~ 211 (308)
..|.-+
T Consensus 82 I~~~~k 87 (89)
T COG4095 82 IKYILK 87 (89)
T ss_pred HHHHHh
Confidence 777654
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=5.3e-11 Score=93.26 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=74.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHH
Q 021755 1 MASLSFFVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFI 80 (308)
Q Consensus 1 ~~~~~~ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~i 80 (308)
|......+|+.|++++... .+||..+++|+|+|+++|+..|+.....+++|+.||++.+| .|+...|.++..++.+
T Consensus 1 m~~~~~viG~ia~ilttf~---flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~-lPii~aN~i~~il~li 76 (89)
T COG4095 1 MDFFIEVIGTIAGILTTFA---FLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILIND-LPIIIANIISFILSLI 76 (89)
T ss_pred CcchhhhHHHHHHHHHHHH---HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHcc-CcchhHHHHHHHHHHH
Confidence 4456677888887777655 59999999999999999999999999999999999999997 8999999999999988
Q ss_pred HHHhhheec
Q 021755 81 YVSLYLIYA 89 (308)
Q Consensus 81 yl~vy~~Y~ 89 (308)
-+....+|.
T Consensus 77 Il~~kI~~~ 85 (89)
T COG4095 77 ILFYKIKYI 85 (89)
T ss_pred HHHHHHHHH
Confidence 777766654
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.47 E-value=1.1e-05 Score=74.01 Aligned_cols=189 Identities=14% Similarity=0.060 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH--------hhccCCceEEEe-h---hh
Q 021755 5 SFFVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFY--------GVMKPGGLVVAT-V---NG 72 (308)
Q Consensus 5 ~~ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~Y--------Gll~~d~~~V~~-~---N~ 72 (308)
..++|+...+.. ..+-+||+++.+|+||++++|+..+..-..+...|+.| ..-.+ .+.-. . |-
T Consensus 4 S~~lG~~~~~~~---~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~--~~~~~~~v~~ed 78 (220)
T TIGR00951 4 SQILGWGYVAAW---SISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNE--FPLSSPGVTQND 78 (220)
T ss_pred HHHHHHHHHHHH---HHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhc--cccccCCCcHHH
Confidence 455666555554 45689999999999999999999999999999999999 33221 22111 1 22
Q ss_pred HH-----HHHHHHHHHhhheecCCcchh-HHHH-HHHHHHHHHHHHHHhhhhe-eeccccchhhhhHHHHHHHHHHhhcc
Q 021755 73 AG-----AALQFIYVSLYLIYAPKDKKV-KTAK-LVAILDVGFLGAVIAITLL-AMHGNLRLTFVGILCAALTIGMYASP 144 (308)
Q Consensus 73 iG-----~vl~~iyl~vy~~Y~~~k~k~-~~~~-~v~~~~~~~l~~~~lv~~~-~~~~~~~~~~lG~ia~~~si~~y~SP 144 (308)
+- +++.+..+.-+.+|.+..+|. +... .......+..+ ...+... .....+-...++.+-..++++-|
T Consensus 79 l~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~l~~iki~is~iky--- 154 (220)
T TIGR00951 79 VFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFA-TLLVALLSPITPLAFVTMLSYIKVAVTLVKY--- 154 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHHHHHHHHHH---
Confidence 22 222222222222333322221 1111 11110010111 1111111 11222334445666666666555
Q ss_pred hhhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhcc-cCeeeEechhHHHHHHHHHH
Q 021755 145 LAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLV-KDIYIGVPNAVGFVLGAAQL 202 (308)
Q Consensus 145 L~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~-~D~fI~ipN~iG~~l~~~Ql 202 (308)
+||++...|.||+..+|..-.+..+.+++.-..-.+.. +|......-.+++.+..+-+
T Consensus 155 iPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~ 213 (220)
T TIGR00951 155 FPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFA 213 (220)
T ss_pred hHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888866655544433 56666666666666665533
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=97.94 E-value=1.7e-05 Score=57.71 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=50.4
Q ss_pred hhhhHHHHHHHHHHhhcchhhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhcccCee
Q 021755 127 TFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIY 186 (308)
Q Consensus 127 ~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~~D~f 186 (308)
.++|+++.++.+..+ +||+.+.+|+|+++++++.+....++++++|++|+++.++.+
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 457888877777777 899999999999999999999999999999999999887543
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.84 E-value=5.1e-05 Score=55.25 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCC
Q 021755 6 FFVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPG 63 (308)
Q Consensus 6 ~ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d 63 (308)
.++|+++. ++...+.+||+++.+|+|+++++|...+...+.+..+|+.|.++.++
T Consensus 3 ~~~g~i~~---~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~ 57 (61)
T PF04193_consen 3 NILGIISI---VLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNY 57 (61)
T ss_pred HHHHHHHH---HHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555554 44557789999999999999999999999999999999999998875
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.26 E-value=0.003 Score=57.46 Aligned_cols=198 Identities=14% Similarity=0.091 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHH
Q 021755 4 LSFFVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVS 83 (308)
Q Consensus 4 ~~~ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~ 83 (308)
+...+|+.....++.+ -+||+.+|+..||++++|...+..-+++-..-+.|.+-.+ .++.-.--.+=..++.+-+.
T Consensus 30 lsklLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g-~pFss~gE~~fLl~Q~vili 105 (230)
T KOG3211|consen 30 LSKLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSG-YPFSSYGEYPFLLLQAVILI 105 (230)
T ss_pred HHhhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcC-CCchhHHHHHHHHHHHHHHH
Confidence 3445666666666655 6999999999999999999999999999999999997665 23322222233344443333
Q ss_pred hhhe-ecCCcchhHHHHHHHHHHHHHHHHHHhhhheeeccccchhhhhHHHHHHHHHHhhcchhhhhhhhccCcccccCh
Q 021755 84 LYLI-YAPKDKKVKTAKLVAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPF 162 (308)
Q Consensus 84 vy~~-Y~~~k~k~~~~~~v~~~~~~~l~~~~lv~~~~~~~~~~~~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~ 162 (308)
.+.. |.-...+.. ...+..+. ..... ........++-...+...-+.-++=+.|+..-.|+|++..+++
T Consensus 106 ~~if~f~~~~~~~v--~~l~~~~~---v~~~~-----~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~ 175 (230)
T KOG3211|consen 106 LCIFHFSGQTVTVV--QFLGYIAL---VVSVL-----ASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSL 175 (230)
T ss_pred HHHHHhccceeehh--hHHHHHHH---HHHHH-----HHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHH
Confidence 3322 321111110 00111100 00000 0111222233333333332334677899999999999999999
Q ss_pred HHHHHHHHhhHHHHhhhhcc-cCeeeEechhHHHHHHHHHHhhheeecCCCCCC
Q 021755 163 LLSFFLFLNAGVWSVYSVLV-KDIYIGVPNAVGFVLGAAQLILYMIYKNKTPLP 215 (308)
Q Consensus 163 ~~~~~~~ln~~lW~~YGll~-~D~fI~ipN~iG~~l~~~Ql~l~~iY~~~~~~~ 215 (308)
.-++.++-.+.--.+|.+-. .|.-++..=++...++..-..=.++||+++.+.
T Consensus 176 it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~~~ 229 (230)
T KOG3211|consen 176 ITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTAIKA 229 (230)
T ss_pred HHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCC
Confidence 99999999999999999887 577777666777777766666667777766554
No 11
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.73 E-value=0.031 Score=58.43 Aligned_cols=189 Identities=13% Similarity=0.102 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhH-HHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHHh
Q 021755 6 FFVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPY-ITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSL 84 (308)
Q Consensus 6 ~ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~-v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~v 84 (308)
..+|++|. +++..-.+-|-..-.|+|. ..-+..| ...+.++.+=+.||++.+| .+++...++|.++
T Consensus 11 ~~~G~~~q---~~F~~rf~~QW~~sek~~~--s~~p~~FW~~Sl~g~~~l~~y~~~~~~-~~~~~~q~~~~~i------- 77 (608)
T PRK01021 11 YPLGLFAN---LFFGSAFCIQWFLSKKRKY--SYVPKIFWILSSIGAVLMICHGFIQSQ-FPIALLHSFNLII------- 77 (608)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHhcCC--ccCchHHHHHHHHHHHHHHHHHHHhcC-CcEEEecccceEE-------
Confidence 34555554 4444444555555555554 3334445 6889999999999998887 5677656655543
Q ss_pred hheec----CCcchhHHHHHHHHHHHHHHHH-HHhhhheeec-----------c--ccc---hhhhhHHHHHHHHHHhhc
Q 021755 85 YLIYA----PKDKKVKTAKLVAILDVGFLGA-VIAITLLAMH-----------G--NLR---LTFVGILCAALTIGMYAS 143 (308)
Q Consensus 85 y~~Y~----~~k~k~~~~~~v~~~~~~~l~~-~~lv~~~~~~-----------~--~~~---~~~lG~ia~~~si~~y~S 143 (308)
|++.- ..+...+...++..+++..+.+ +.+++++... . +.. -..+|++|-++-..=|
T Consensus 78 y~rNl~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf-- 155 (608)
T PRK01021 78 YFRNLNIASSRPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF-- 155 (608)
T ss_pred EeehhhhcccccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH--
Confidence 33321 1111122211111111111111 1111111111 1 111 2346777765544444
Q ss_pred chhhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhcccCeeeEechhHHHHHHHHHHhhheeecCC
Q 021755 144 PLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGVPNAVGFVLGAAQLILYMIYKNK 211 (308)
Q Consensus 144 PL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG~~l~~~Ql~l~~iY~~~ 211 (308)
+-|-...- ++.-+.+|......+++++++=++|++..+|...++.+.+|.+..+--+.+...-+++
T Consensus 156 -~~Qw~~se-~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~li~~~~~~ 221 (608)
T PRK01021 156 -FIQWFYLE-YNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLRIAYKEARR 221 (608)
T ss_pred -HHHHHHHH-hcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHHHHHhhccc
Confidence 34433333 3444689999999999999999999999999999999999999888776554444333
No 12
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=96.73 E-value=0.041 Score=51.92 Aligned_cols=201 Identities=15% Similarity=0.117 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHHhhh
Q 021755 7 FVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYL 86 (308)
Q Consensus 7 ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~vy~ 86 (308)
.-.++|++.+++-..+-+||+....|+|+++++|+.+.+.-++....=+.|..+.+- -++...-..=..++...+.+..
T Consensus 8 ~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~-~~~~~~~~~yy~~~d~~l~~q~ 86 (260)
T KOG2913|consen 8 LSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL-GSTLKVQAVYYTLADSVLFVQC 86 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHH
Confidence 334555666666667789999999999999999999888877777777777777664 2111111111111111111222
Q ss_pred e-ecCCcc-h-------hH----------------------HHHH--HHHHHHHHHHHHHhhhheeec--cc-cchhhhh
Q 021755 87 I-YAPKDK-K-------VK----------------------TAKL--VAILDVGFLGAVIAITLLAMH--GN-LRLTFVG 130 (308)
Q Consensus 87 ~-Y~~~k~-k-------~~----------------------~~~~--v~~~~~~~l~~~~lv~~~~~~--~~-~~~~~lG 130 (308)
. |....+ + .+ .+.. .......+.......-..... .+ .....+|
T Consensus 87 ~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 166 (260)
T KOG2913|consen 87 LYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSLG 166 (260)
T ss_pred HhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhhcchH
Confidence 2 221111 0 00 0000 000111111100000001111 12 3344567
Q ss_pred HHHH-HHHHHHhhcchhhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhcccCeeeEechhH----HHHHHHHHHhhh
Q 021755 131 ILCA-ALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGVPNAV----GFVLGAAQLILY 205 (308)
Q Consensus 131 ~ia~-~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~~D~fI~ipN~i----G~~l~~~Ql~l~ 205 (308)
.+.. +.+++..++.+||+..-.+.|+++++++.+.+...+.+. .|+.-. -..--.|+.. +..+-+.-..=+
T Consensus 167 ~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~---~y~~s~-~~~~n~~w~~~~~~~~~~D~~~~~q~ 242 (260)
T KOG2913|consen 167 AILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNT---TYILSS-YLVTNLPWLVDSKGTIYLDIFIFLQF 242 (260)
T ss_pred HHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHcccc---cccccc-ccccCCcccccCCcchhHHHHHHHHH
Confidence 6444 555666788999999999999999999877766666554 565541 1111122222 344445555556
Q ss_pred eeecCCC
Q 021755 206 MIYKNKT 212 (308)
Q Consensus 206 ~iY~~~~ 212 (308)
+.|++.|
T Consensus 243 ~~~~~~~ 249 (260)
T KOG2913|consen 243 FNYRASK 249 (260)
T ss_pred HHhhccc
Confidence 6676666
No 13
>PHA02246 hypothetical protein
Probab=95.66 E-value=0.9 Score=39.91 Aligned_cols=163 Identities=15% Similarity=0.177 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCC--ceEEEehhhHHHHHHHHHHHhhheecC
Q 021755 13 NVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPG--GLVVATVNGAGAALQFIYVSLYLIYAP 90 (308)
Q Consensus 13 ~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d--~~~V~~~N~iG~vl~~iyl~vy~~Y~~ 90 (308)
...++.....-.|+++.+.|.|+..++| -.|+-....+..-..|-++..| .+. +.+-+....++++.+.+- .|+
T Consensus 10 ~~yailit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyNlL~T~~~~fq-i~svg~nl~lgivcLlv~-~~r- 85 (192)
T PHA02246 10 ILYAILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYNLLLTDASVFQ-IVSVGLNLTLGIVCLLVA-SYR- 85 (192)
T ss_pred HHHHHHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHHHHhcCCceEE-Eeeeehhhhhhhhheeee-hhh-
Confidence 3345555666799999999999999997 4456666667777888887654 233 333344455555544332 222
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhhheeeccccchhhhhHHHHHHHHHHhhcchhhhhhhhccCcccccChHHHHHHHH
Q 021755 91 KDKKVKTAKLVAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFL 170 (308)
Q Consensus 91 ~k~k~~~~~~v~~~~~~~l~~~~lv~~~~~~~~~~~~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~l 170 (308)
|+......... .+.++ ++. + .+..++--.+|...-+..| ++|+.+-+|||++|+.+.++.+...+
T Consensus 86 -kkd~f~~~fii-----ifSLl-lfl---l--~~~~evtQtVat~tIiLaY---i~QIIqfyKTK~SEg~n~~l~lii~~ 150 (192)
T PHA02246 86 -KKDYFSIPFII-----VFSLL-LFL---L--SDFTALTQTVATITIILAY---VTQITTFYKTKSAEGTNRFLFLIIGL 150 (192)
T ss_pred -ccccccchHHH-----HHHHH-HHH---H--hhhHHHHHHHHHHHHHHHH---HHHHHHHhhhcccCCCChhHHHHHHH
Confidence 22211111111 11111 111 1 1122233334444444445 89999999999999999877654444
Q ss_pred hhHHHHhhhhcc--cCeeeEechhHHH
Q 021755 171 NAGVWSVYSVLV--KDIYIGVPNAVGF 195 (308)
Q Consensus 171 n~~lW~~YGll~--~D~fI~ipN~iG~ 195 (308)
.-.+ ......+ --.+|++..+..+
T Consensus 151 GL~~-L~~~m~Lthv~~hIiiTEf~N~ 176 (192)
T PHA02246 151 GLAS-LIVSMVLTHTYVHIIATEFVNF 176 (192)
T ss_pred HHHH-HHHHHhhhCCcceeeHHHHHHH
Confidence 3322 2333333 3446666544443
No 14
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=95.45 E-value=0.02 Score=52.56 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHHhhcchhhhhhhhccCcccccChHHHHHHHHhhHHHHhh
Q 021755 127 TFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVY 178 (308)
Q Consensus 127 ~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~Y 178 (308)
..+|+...++....+ +||+.+.+|+||++++|+.+....+++...|.+|
T Consensus 5 ~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 5 QILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 567888887777777 8999999999999999999999999999999999
No 15
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=94.76 E-value=0.42 Score=41.90 Aligned_cols=150 Identities=12% Similarity=0.159 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHH
Q 021755 4 LSFFVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVS 83 (308)
Q Consensus 4 ~~~ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~ 83 (308)
..+.+|.+|.++.+.-| ..|+-. .........+.++...-.+.+. .+=+.++.++.+...
T Consensus 4 ~aQ~~g~ia~~l~~~sf-----------~~k~~~----~l~~~~~~~~~~~~ihf~LLGa-----~taa~~~~ls~~R~~ 63 (163)
T PF10688_consen 4 LAQILGFIAFLLGILSF-----------QQKDDR----RLLLLQAISCLLFAIHFALLGA-----WTAALSMLLSAVRNF 63 (163)
T ss_pred HHHHHHHHHHHHHHHHH-----------HcccHH----HHHHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHH
Confidence 45778888877766543 222211 2345666677777776666664 235566777777777
Q ss_pred hhheecCCcchhHHHHHHHHHHHHHHHHHHhhhheeeccccchhhhhHHHHHHHHHHhhcchhhhhhhhccCcccccChH
Q 021755 84 LYLIYAPKDKKVKTAKLVAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFL 163 (308)
Q Consensus 84 vy~~Y~~~k~k~~~~~~v~~~~~~~l~~~~lv~~~~~~~~~~~~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~ 163 (308)
+..++.. +..+. + ++.+.++.+. ...+.-.+.++.+++++....-. ..+.+.
T Consensus 64 ~s~~~~~---~~v~~--~------Fi~~~~~~~~--~~~~g~~~~l~~~as~~~t~a~f-------------~~~~~~-- 115 (163)
T PF10688_consen 64 VSIRTRS---RWVMA--V------FIALSLVMGL--FTWQGWIELLPYAASVLGTIALF-------------MLDGIK-- 115 (163)
T ss_pred HHHHhCC---HHHHH--H------HHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHH-------------hcCchh--
Confidence 6665543 21111 1 1111111121 12244456777776665544321 122333
Q ss_pred HHHHHHHhhHHHHhhhhcccCeeeEechhHHHHHHHHH
Q 021755 164 LSFFLFLNAGVWSVYSVLVKDIYIGVPNAVGFVLGAAQ 201 (308)
Q Consensus 164 ~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG~~l~~~Q 201 (308)
|=...++++.+|.+|++++++++..+-|...++.+.+.
T Consensus 116 mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 116 MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 33457999999999999999999988888888766554
No 16
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=94.35 E-value=0.013 Score=48.97 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=56.0
Q ss_pred cCcccccChHHHHHHHHhhHHHHhhhhcc--cCeeeEechhHHHHHHHHHHhhheeecCCCCCCC
Q 021755 154 TKSVKYMPFLLSFFLFLNAGVWSVYSVLV--KDIYIGVPNAVGFVLGAAQLILYMIYKNKTPLPT 216 (308)
Q Consensus 154 tKs~~~mp~~~~~~~~ln~~lW~~YGll~--~D~fI~ipN~iG~~l~~~Ql~l~~iY~~~~~~~~ 216 (308)
+|..|.++..|..+.++.+.+|+=|++.+ +|+.+..-|+.-...+..|+.=++.|...++...
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~~ 103 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKKEA 103 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Confidence 58999999999999999999999999999 7998888899999999999998888876555443
No 17
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=91.97 E-value=0.15 Score=32.05 Aligned_cols=27 Identities=22% Similarity=0.134 Sum_probs=21.9
Q ss_pred hcHHHHHHHHHhcCCCCccchhHHHHH
Q 021755 22 SPIKTFWQIVKKKSTESYKGVPYITTL 48 (308)
Q Consensus 22 SPlp~~~~I~k~Kst~~~s~lp~v~~~ 48 (308)
+-+||+.+.+|+|+++++|...+.+.+
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 568999999999999999866655433
No 18
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=90.65 E-value=0.19 Score=31.62 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=24.1
Q ss_pred cchhhhhhhhccCcccccChHHHHHHHHh
Q 021755 143 SPLAVMTTVIRTKSVKYMPFLLSFFLFLN 171 (308)
Q Consensus 143 SPL~~i~~ViktKs~~~mp~~~~~~~~ln 171 (308)
+-+||+.+.+|+|+++++|+.+.+..+..
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~G 30 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLLG 30 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHhc
Confidence 45899999999999999998887755543
No 19
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=86.92 E-value=0.25 Score=41.36 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=51.3
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHHhhccC-CceEEEehhhHHHHHHHHHHHhhheecCCc
Q 021755 33 KKSTESYKGVPYITTLMSTCLWTFYGVMKP-GGLVVATVNGAGAALQFIYVSLYLIYAPKD 92 (308)
Q Consensus 33 ~Kst~~~s~lp~v~~~ln~~lWl~YGll~~-d~~~V~~~N~iG~vl~~iyl~vy~~Y~~~k 92 (308)
+|..+.+|..+-...++.+.+|+.|++.+. -+..++.+|.+-...+.+++.=++.|....
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~ 99 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQ 99 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 588999999999999999999999999773 237789999999999999998888776443
No 20
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.39 E-value=0.74 Score=37.99 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=49.0
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHHhhcc--CCceEEEehhhHHHHHHHHHHHhhheec
Q 021755 33 KKSTESYKGVPYITTLMSTCLWTFYGVMK--PGGLVVATVNGAGAALQFIYVSLYLIYA 89 (308)
Q Consensus 33 ~Kst~~~s~lp~v~~~ln~~lWl~YGll~--~d~~~V~~~N~iG~vl~~iyl~vy~~Y~ 89 (308)
.|..|.+|............+|..|++.+ .| +.++.+|.+=.+.+++++.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN-~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKN-YSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccc-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899889999999999999999877 34 7899999999999999998888773
No 21
>PHA02246 hypothetical protein
Probab=81.64 E-value=11 Score=33.22 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHH
Q 021755 13 NVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAAL 77 (308)
Q Consensus 13 ~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl 77 (308)
++.++.+.++-++|+.+-+|+|+.|+.|...++....+-.+-..-=.+++-...++++....+++
T Consensus 114 tVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 114 TVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhCCcceeeHHHHHHHHH
Confidence 34455556678999999999999999998877544444333322223444334566665555444
No 22
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.21 E-value=0.94 Score=37.39 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=51.2
Q ss_pred CcccccChHHHHHHHHhhHHHHhhhhcc--cCeeeEechhHHHHHHHHHHhhheeec
Q 021755 155 KSVKYMPFLLSFFLFLNAGVWSVYSVLV--KDIYIGVPNAVGFVLGAAQLILYMIYK 209 (308)
Q Consensus 155 Ks~~~mp~~~~~~~~ln~~lW~~YGll~--~D~fI~ipN~iG~~l~~~Ql~l~~iY~ 209 (308)
|..|.+|...+++.+..+++|+=|.+.+ +|+++..-|++-.+-+..||.=++.|.
T Consensus 44 rP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 44 RPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred CChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999 799999999999999999999988883
No 23
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=79.05 E-value=3.9 Score=31.39 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=40.8
Q ss_pred hhhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhcccCeeeEechhHHHHHHH
Q 021755 145 LAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGVPNAVGFVLGA 199 (308)
Q Consensus 145 L~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG~~l~~ 199 (308)
+-|-...-|.| -+.+|..--..+.+.+++=++||+..+|..+++...+|.+..+
T Consensus 14 ~~QW~~SEk~k-~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy~ 67 (72)
T PF07578_consen 14 IVQWIYSEKAK-KSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIYI 67 (72)
T ss_pred HHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHHH
Confidence 34433333333 3678988889999999999999999999988877777776443
No 24
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=74.93 E-value=31 Score=35.74 Aligned_cols=167 Identities=16% Similarity=0.116 Sum_probs=101.2
Q ss_pred HHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHHh-----------
Q 021755 16 SLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSL----------- 84 (308)
Q Consensus 16 si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~v----------- 84 (308)
+++=|++.-.++.=+.++||-+++|.-.....++++.+=.+|=+=.+..+.|.++-++|.++.+.=+--
T Consensus 329 ~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g~ 408 (592)
T KOG2489|consen 329 SVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSGL 408 (592)
T ss_pred HHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeeeeeecceEEEEEEecccc
Confidence 455566667777778899999999988888888888887777543222578889999998887533211
Q ss_pred -h-----------heecCCcchh---HHHHHHHHHHHHHHHHHHhhhhe-eeccccchhhhhHHHHHHHHHHhhcchhhh
Q 021755 85 -Y-----------LIYAPKDKKV---KTAKLVAILDVGFLGAVIAITLL-AMHGNLRLTFVGILCAALTIGMYASPLAVM 148 (308)
Q Consensus 85 -y-----------~~Y~~~k~k~---~~~~~v~~~~~~~l~~~~lv~~~-~~~~~~~~~~lG~ia~~~si~~y~SPL~~i 148 (308)
. -.|..++.+. ...+.+..+-.-.+....++.+. ..+..-..=++-.+.+.+-.+-|.--+||+
T Consensus 409 i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQL 488 (592)
T KOG2489|consen 409 IPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQL 488 (592)
T ss_pred cccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHH
Confidence 1 1111111111 11122211111111111222222 223333344455555555555555668999
Q ss_pred hhhhccCcccccChHHHHHHHHhhHHHHhhhhcc
Q 021755 149 TTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLV 182 (308)
Q Consensus 149 ~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~ 182 (308)
---.|-||++-+|-.|..==++|.++==++++.+
T Consensus 489 FINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVI 522 (592)
T KOG2489|consen 489 FINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVI 522 (592)
T ss_pred HhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888888887766666555
No 25
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=72.76 E-value=7.7 Score=29.77 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=39.9
Q ss_pred HHHHHHhcHHHHHHHHHhcCCCCccchhH-HHHHHHHHHHHHHhhccCCceEEEehhhHHHHHH
Q 021755 16 SLLVFASPIKTFWQIVKKKSTESYKGVPY-ITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQ 78 (308)
Q Consensus 16 si~m~~SPlp~~~~I~k~Kst~~~s~lp~-v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~ 78 (308)
.+....--+-|-..-.|+|.+ .-|..| .+.++++.+=+.||+..+| +.++...++|.+..
T Consensus 6 q~lF~~Rf~~QW~~SEk~k~s--v~P~~FW~lSl~Gs~lll~Y~i~r~D-pV~ilgq~~gl~iy 66 (72)
T PF07578_consen 6 QLLFSSRFIVQWIYSEKAKKS--VVPVAFWYLSLIGSLLLLIYAIIRKD-PVFILGQSFGLFIY 66 (72)
T ss_pred HHHHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHhcChHHH
Confidence 344444456666666666653 233444 6899999999999999998 65566666666553
No 26
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=71.87 E-value=9.5 Score=37.02 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhhcchhhhhhhhccCcccccChH
Q 021755 130 GILCAALTIGMYASPLAVMTTVIRTKSVKYMPFL 163 (308)
Q Consensus 130 G~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~ 163 (308)
-.+=...+++=| +||..+-.+.||+++-|..
T Consensus 268 syiKl~mTliKY---iPQa~mN~tRKSt~gwsIg 298 (372)
T KOG3145|consen 268 SYIKLAMTLIKY---IPQAYMNFTRKSTVGWSIG 298 (372)
T ss_pred HHHHHHHHHHHh---hhHHhhcceeccccccccc
Confidence 334444555556 7999999999999988754
No 27
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=71.22 E-value=9.2 Score=36.05 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=32.7
Q ss_pred ccChHHHHH---HHHhhHHHHhhhhcc---cCeeeEechhHHHHHHHHHHhhheeecCCC
Q 021755 159 YMPFLLSFF---LFLNAGVWSVYSVLV---KDIYIGVPNAVGFVLGAAQLILYMIYKNKT 212 (308)
Q Consensus 159 ~mp~~~~~~---~~ln~~lW~~YGll~---~D~fI~ipN~iG~~l~~~Ql~l~~iY~~~~ 212 (308)
+|-..+.+= +.+.+-.|.-||++- ++...-+-|.+|+.+.++-..+|..-+++.
T Consensus 80 GLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 80 GLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 444444433 334444455577664 333444459999999999988886655444
No 28
>COG3952 Predicted membrane protein [Function unknown]
Probab=70.20 E-value=9.1 Score=31.52 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=50.3
Q ss_pred hccCcccccChHHHHHHHHhhHHHHhhhhcccCeeeEechhHHHHHHHHHHhhheeecC
Q 021755 152 IRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGVPNAVGFVLGAAQLILYMIYKN 210 (308)
Q Consensus 152 iktKs~~~mp~~~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG~~l~~~Ql~l~~iY~~ 210 (308)
.+.++.+.+|.+.--++++.+.+=+.|.+-++|..-++.|+.|....+.-+-+...-++
T Consensus 48 se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ker~ 106 (113)
T COG3952 48 SEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIKERR 106 (113)
T ss_pred HHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 46678889999999999999999999999999998888999999988888666544443
No 29
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=66.19 E-value=14 Score=34.11 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=55.7
Q ss_pred HHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHHhhheec
Q 021755 19 VFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYA 89 (308)
Q Consensus 19 m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~vy~~Y~ 89 (308)
...|=++|+..-+|+|+||..+.+...+.+..|..=+.|.+...+++.+...-.+..+++..-..-.++|.
T Consensus 153 ~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~ 223 (230)
T KOG3211|consen 153 VVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYW 223 (230)
T ss_pred hhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999999887667666666666666655554444444
No 30
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=62.70 E-value=16 Score=31.90 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHH
Q 021755 45 ITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYV 82 (308)
Q Consensus 45 v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl 82 (308)
...++++.+|+.|+++.++ ++....|....+.+.+.+
T Consensus 118 ~~~l~~~~~w~~~n~~igS-~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGS-WGGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHH
Confidence 5689999999999999997 777788887777775544
No 31
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=62.68 E-value=16 Score=34.57 Aligned_cols=55 Identities=18% Similarity=0.073 Sum_probs=42.8
Q ss_pred hhhhhHHHHHHHHHHhhcchhhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhccc
Q 021755 126 LTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVK 183 (308)
Q Consensus 126 ~~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~~ 183 (308)
..+.|.+..++....+ .||+.+..|+|+.+++|....+...+..+.=.+|..+..
T Consensus 9 s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~ 63 (260)
T KOG2913|consen 9 STILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP 63 (260)
T ss_pred HHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc
Confidence 3455666666666555 799999999999999999998888888877777776654
No 32
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.17 E-value=37 Score=30.97 Aligned_cols=59 Identities=20% Similarity=0.415 Sum_probs=40.2
Q ss_pred hcchhhhhhhhccCcccccCh----HHHHHHHHhhHHHHhhhhcccCeeeEechhHHHHHHHHHHhhh
Q 021755 142 ASPLAVMTTVIRTKSVKYMPF----LLSFFLFLNAGVWSVYSVLVKDIYIGVPNAVGFVLGAAQLILY 205 (308)
Q Consensus 142 ~SPL~~i~~ViktKs~~~mp~----~~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG~~l~~~Ql~l~ 205 (308)
.|=|||++..-||+.+|++-. .+.+.=++.+.-| +|-...+|.+- .+.++.|++|-++|
T Consensus 129 VaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~W-I~r~~~e~~~~----~iai~agiVQT~ly 191 (212)
T KOG3106|consen 129 VAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANW-IYRYVTEDFWD----PIAIVAGIVQTVLY 191 (212)
T ss_pred HHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH-HHHHHhhcccc----chHHHHHHHHHHHH
Confidence 455899999999999999863 4444445666666 45555566332 34556777887776
No 33
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=58.25 E-value=1.5e+02 Score=28.98 Aligned_cols=134 Identities=15% Similarity=0.174 Sum_probs=67.0
Q ss_pred EehhhHHHHHHHHHHHhhheecCCc-chhHHHHHHHHH----HHHHHHHHHhhhheeecccc-----chhhhhHHHHHHH
Q 021755 68 ATVNGAGAALQFIYVSLYLIYAPKD-KKVKTAKLVAIL----DVGFLGAVIAITLLAMHGNL-----RLTFVGILCAALT 137 (308)
Q Consensus 68 ~~~N~iG~vl~~iyl~vy~~Y~~~k-~k~~~~~~v~~~----~~~~l~~~~lv~~~~~~~~~-----~~~~lG~ia~~~s 137 (308)
+=.|..+.+.++..+.++-..-++- .....++...++ +.+.+ +.+++++....... -....|+.|.++.
T Consensus 76 ie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~-v~~~l~Y~it~n~v~L~~~i~G~~gilaGilV 154 (326)
T KOG2890|consen 76 IELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVL-VPALLLYMITDNHVYLYIPIHGTTGILAGILV 154 (326)
T ss_pred hhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHH-HHHHHHHHHhcCceEEEEEeccchHHHHHHHH
Confidence 4567788888887777776654221 111112212111 11111 11111111111211 2233555555554
Q ss_pred HHHhhcchhhhhhhhccCccc----ccChHHHHHHHHhhHHHHhhhhcccCeeeEechhHHHHHHHHHHhhheeecCCCC
Q 021755 138 IGMYASPLAVMTTVIRTKSVK----YMPFLLSFFLFLNAGVWSVYSVLVKDIYIGVPNAVGFVLGAAQLILYMIYKNKTP 213 (308)
Q Consensus 138 i~~y~SPL~~i~~ViktKs~~----~mp~~~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG~~l~~~Ql~l~~iY~~~~~ 213 (308)
..=-.-| -..|+++|... -+|+.+.+.+++..+.|+.++. ....+.+|+.---.|++|-.+.+
T Consensus 155 a~kQllp---d~~il~~~~~r~~~~~lP~~~l~~~~il~i~~f~~f~----------~l~s~~~g~~~sWtYLRfyq~h~ 221 (326)
T KOG2890|consen 155 AWKQLLP---DTIILELKSGRFLYAHLPLLVLFLSLILSIITFLVFA----------SLPSITFGVLVSWTYLRFYQRHP 221 (326)
T ss_pred HHHHHcC---ceeEEeccchhhhhhhCCHHHHHHHHHHHHHHHHHhh----------hhHHHHHhhhhhhhhheecccCC
Confidence 4333212 13445555443 4799999999999999988863 34444455555556666655544
Q ss_pred CC
Q 021755 214 LP 215 (308)
Q Consensus 214 ~~ 215 (308)
++
T Consensus 222 ~~ 223 (326)
T KOG2890|consen 222 TD 223 (326)
T ss_pred cc
Confidence 33
No 34
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=57.88 E-value=1.4e+02 Score=29.31 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=25.0
Q ss_pred hhccCcccccChHHHHHHHHhhHHHH-hhhhcccCeeeEechhHHHHHHHHHHhhheeec
Q 021755 151 VIRTKSVKYMPFLLSFFLFLNAGVWS-VYSVLVKDIYIGVPNAVGFVLGAAQLILYMIYK 209 (308)
Q Consensus 151 ViktKs~~~mp~~~~~~~~ln~~lW~-~YGll~~D~fI~ipN~iG~~l~~~Ql~l~~iY~ 209 (308)
+++.-++..+.+.+ +.+-.|. +.|++..+...-.--.+|+++-.+=+++|..-+
T Consensus 253 ~l~~ssAt~~nLsL-----LTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 253 VLRMSSATFFNLSL-----LTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHhCccceeehHH-----HHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 45555655555443 3333442 445555444333334456554444444444333
No 35
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=52.87 E-value=83 Score=32.11 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=7.8
Q ss_pred HHhhHHHHhhhhcc
Q 021755 169 FLNAGVWSVYSVLV 182 (308)
Q Consensus 169 ~ln~~lW~~YGll~ 182 (308)
..-+++|+++++..
T Consensus 409 ~~~~~~~~~~~~v~ 422 (507)
T TIGR00910 409 AGIGFLLSIFAFFI 422 (507)
T ss_pred HHHHHHHHHHHHhe
Confidence 33445666666654
No 36
>PF15102 TMEM154: TMEM154 protein family
Probab=48.19 E-value=23 Score=30.81 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=21.6
Q ss_pred eeeEechhHHHHHHHHHHhhheeecCCCCCCCC
Q 021755 185 IYIGVPNAVGFVLGAAQLILYMIYKNKTPLPTK 217 (308)
Q Consensus 185 ~fI~ipN~iG~~l~~~Ql~l~~iY~~~~~~~~~ 217 (308)
.+|+||-++++++-+.-+++.++|+|++....+
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ 91 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRTKQEP 91 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeecccCCCC
Confidence 356678777766666667777777766654433
No 37
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=46.16 E-value=3.8e+02 Score=28.28 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=36.3
Q ss_pred HHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHH
Q 021755 20 FASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQF 79 (308)
Q Consensus 20 ~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~ 79 (308)
+..|+..+-+.+-.=+-++++|.|+++. ..++.||.+.+| . +-|+++.+
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai----~f~lfFGmM~gD-~------GyGLil~l 373 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAI----FFPLFFGMMLGD-A------GYGLLLLL 373 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHH----HHHHHHHHHHHh-H------HHHHHHHH
Confidence 3567777777777777888888888754 457899999998 2 45666654
No 38
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=44.56 E-value=7.1 Score=37.69 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred EEehhhHHHHHHHHHHHhhheecCCcchhHHHHHHHHHHHHHHHHHHhhh-heeeccccchhhhhHHHHHHHHHHhhcch
Q 021755 67 VATVNGAGAALQFIYVSLYLIYAPKDKKVKTAKLVAILDVGFLGAVIAIT-LLAMHGNLRLTFVGILCAALTIGMYASPL 145 (308)
Q Consensus 67 V~~~N~iG~vl~~iyl~vy~~Y~~~k~k~~~~~~v~~~~~~~l~~~~lv~-~~~~~~~~~~~~lG~ia~~~si~~y~SPL 145 (308)
..+-|.+..++-++.++++++ . || .++-+.++++++++++++++ +..+++ +..++|++--++.+.+-..-.
T Consensus 52 ~~vl~sfAvvliiIIiIImlF-~---Rr--LLCPLGlLCiilimi~lLv~~L~tLtG--Q~LF~Gi~~l~l~~lLaL~vW 123 (381)
T PF05297_consen 52 LTVLYSFAVVLIIIIIIIMLF-K---RR--LLCPLGLLCIILIMIVLLVSMLWTLTG--QTLFVGIVILFLCCLLALGVW 123 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H---Hh--hcCcchHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHH
Confidence 345566777775555555543 1 22 12222333333333333322 233444 345667643332222211111
Q ss_pred hhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhcc-cCeeeEechhHHHHHHHHHHhhheeecCCCC
Q 021755 146 AVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLV-KDIYIGVPNAVGFVLGAAQLILYMIYKNKTP 213 (308)
Q Consensus 146 ~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~-~D~fI~ipN~iG~~l~~~Ql~l~~iY~~~~~ 213 (308)
--|. .+|+--++.--+..++.+|+-.++-++-+++. .+||-+.....=+++-+ -++.++|-...+
T Consensus 124 ~Ym~-lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFl--aiLIWlY~H~~~ 189 (381)
T PF05297_consen 124 FYMW-LLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFL--AILIWLYVHDQR 189 (381)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC
Confidence 1122 34444444443333333343344444444444 67776665554443222 234455555444
No 39
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=44.49 E-value=4.1e+02 Score=28.08 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=27.9
Q ss_pred ccchhhhhHHHHHHHHHHhhcchhhhhhhhccCcccccChHHHHHHHHhhHHHHh
Q 021755 123 NLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSV 177 (308)
Q Consensus 123 ~~~~~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~ 177 (308)
+-...+++.+ +.++++|..---.+|- ++-|.+.....+...+..+.|..
T Consensus 451 df~~~~l~i~--i~n~~lY~~fYiimKi----~~~E~i~~~~~~~~~~~~~~W~~ 499 (570)
T PF13965_consen 451 DFASFLLAIF--IGNLLLYLFFYIIMKI----RHREKILLKPIIYLVLAFVSWGF 499 (570)
T ss_pred cHHHHHHHHH--HHHHHHHHHHHHHHHH----hhcChhHHHHHHHHHHHHHHHHH
Confidence 4444455555 4666666543333333 45566666666666777777754
No 40
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=40.54 E-value=1.4e+02 Score=30.36 Aligned_cols=138 Identities=10% Similarity=0.204 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHH-H--HHhcCCCCccchhHHHHHHHHHHHHHHhh-ccC----CceEEEehhhHHHHH
Q 021755 6 FFVGIIGNVISLLVFASPIKTFWQ-I--VKKKSTESYKGVPYITTLMSTCLWTFYGV-MKP----GGLVVATVNGAGAAL 77 (308)
Q Consensus 6 ~ivG~la~i~si~m~~SPlp~~~~-I--~k~Kst~~~s~lp~v~~~ln~~lWl~YGl-l~~----d~~~V~~~N~iG~vl 77 (308)
..+..+|.-.+..+++.-+|+..+ + ..-|++|-++.+|+++.+.....+..-.= ++. ...-.-+-|.++...
T Consensus 263 i~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~ 342 (466)
T KOG2532|consen 263 IWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGG 342 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHH
Confidence 344555555666666667777655 2 24577888999999988887766533221 111 001234568888888
Q ss_pred HHHHHHhhheecCCcchhHHHHHHHHHHHHHHHHHHhhhheeec----cccchhhhhHHHHHHHHHHhhcchh
Q 021755 78 QFIYVSLYLIYAPKDKKVKTAKLVAILDVGFLGAVIAITLLAMH----GNLRLTFVGILCAALTIGMYASPLA 146 (308)
Q Consensus 78 ~~iyl~vy~~Y~~~k~k~~~~~~v~~~~~~~l~~~~lv~~~~~~----~~~~~~~lG~ia~~~si~~y~SPL~ 146 (308)
..+.+++-- |.++.++...+..+ .+..++.+ .....++..+ .+....++|+.-.+.++..+.+|+.
T Consensus 343 ~ai~l~~l~-~~~~~~~~~a~~~l-~~~~~~~g-~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~ 412 (466)
T KOG2532|consen 343 PAVFLLVLA-FTSDEHRLLAVILL-TIAIGLSG-FNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLL 412 (466)
T ss_pred HHHHHHeee-ecCCCcchHHHHHH-HHHHHHcc-cchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777666544 44444442111111 11111111 0111111111 1223445777777777888887775
No 41
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=39.68 E-value=94 Score=28.84 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=45.7
Q ss_pred ccccchhhhhHHHHHHHHHHhhcchhhhhhhhccCcccccChHHHHHHHHhhH-HHH
Q 021755 121 HGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAG-VWS 176 (308)
Q Consensus 121 ~~~~~~~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~-lW~ 176 (308)
+.+...+++|+.|++.+.+|-+-.=-..|+++-+.|....+..|+..+++|-+ .|.
T Consensus 127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~ 183 (290)
T KOG4314|consen 127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISF 183 (290)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhh
Confidence 44567789999999999998876667789999999999999889988888743 443
No 42
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=39.67 E-value=2.9e+02 Score=24.97 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=46.1
Q ss_pred hcchhhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhcccCeeeEechhHHHHHHHHHHhhh
Q 021755 142 ASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGVPNAVGFVLGAAQLILY 205 (308)
Q Consensus 142 ~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG~~l~~~Ql~l~ 205 (308)
.+=|||+.+.-|...+|++-.--.++..+--.+..-|++...-.-+-=.--+.+..|++|-.+|
T Consensus 130 VAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY 193 (214)
T COG5196 130 VAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLY 193 (214)
T ss_pred HHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHHHHHH
Confidence 4458999999999999999877778888888888888888743322222234556677787776
No 43
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=37.96 E-value=39 Score=29.45 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=25.7
Q ss_pred hhhhhccCcccccccccccCCCCCCccchHHHhchhcccccc
Q 021755 221 SVKERSAHKVKDGIEMGARGDDHDNQEDDLEEANGKKKRTLR 262 (308)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (308)
++|+|+.....+.-+-+...-..++-.|++|.+|+|=+++++
T Consensus 95 ~e~~~d~~~~~~a~~~~~~~~~~~nVLnRV~~~Q~rWK~QVq 136 (149)
T PF05434_consen 95 NEDDEDAQPFANAHDSQSRSRSRSNVLNRVEHAQQRWKRQVQ 136 (149)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 444555544444444344444457888999999887666654
No 44
>PHA03049 IMV membrane protein; Provisional
Probab=35.39 E-value=35 Score=25.82 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhheeecCCCCCCCC
Q 021755 193 VGFVLGAAQLILYMIYKNKTPLPTK 217 (308)
Q Consensus 193 iG~~l~~~Ql~l~~iY~~~~~~~~~ 217 (308)
++++..++-+++|.+|.+++....+
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q~~ 32 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTSQN 32 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCC
Confidence 4566678888999999988766654
No 45
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=33.93 E-value=78 Score=32.69 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=14.0
Q ss_pred CCccchHHHhchhccccccccc
Q 021755 244 DNQEDDLEEANGKKKRTLRQGK 265 (308)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~ 265 (308)
++.++=++.-+++++.++|.|-
T Consensus 436 ~~~~~f~~~~~~~~~~r~r~ga 457 (524)
T PF05977_consen 436 EDAAAFLAAMRELRRIRRRDGA 457 (524)
T ss_pred ccHHHHHHHHHHHHHHHhhcCh
Confidence 3344444555667888888884
No 46
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=33.13 E-value=2.9e+02 Score=27.60 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=21.6
Q ss_pred hhH-HHHHHHHHHhhcchhhhhhhhccCcccccChHHHHHHHHhhHHH
Q 021755 129 VGI-LCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVW 175 (308)
Q Consensus 129 lG~-ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW 175 (308)
+|. +|.+++.++.+-|.-+-.+.. .+.++.........+..++|
T Consensus 272 ~G~~~G~lia~~~l~~p~~~Y~~~f---~~~~~~~~i~~~la~i~~i~ 316 (374)
T PF01528_consen 272 FGPHLGTLIACGILGLPAIRYENRF---VAANLHTGIAINLAVIAIIC 316 (374)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHH
Confidence 444 555555555555665555555 33444444444444444455
No 47
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=32.44 E-value=1e+02 Score=31.11 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHH
Q 021755 11 IGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFI 80 (308)
Q Consensus 11 la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~i 80 (308)
++..-+++=|++.-.++.-++++||.+++|....+.-+++..+=++|=+=.+..+.|.+++++|+++++.
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhhe
Confidence 3444467778888999999999999999998888888888877777754333257899999999999864
No 48
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=30.30 E-value=2.3e+02 Score=27.82 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=24.4
Q ss_pred HHhhhhcccCeeeEechhHHHHHHHHHHhhheeecCC
Q 021755 175 WSVYSVLVKDIYIGVPNAVGFVLGAAQLILYMIYKNK 211 (308)
Q Consensus 175 W~~YGll~~D~fI~ipN~iG~~l~~~Ql~l~~iY~~~ 211 (308)
|.-|....+-......|.+|+.++..-...+.-|++.
T Consensus 256 ~g~~~~a~ga~~L~~~Nl~~I~la~~~vf~~~g~~p~ 292 (325)
T TIGR00341 256 ISPLPLAVKSLILTLINVAGLMAGSLAGVYVYGIRAY 292 (325)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4344444455566778999999877766655656554
No 49
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=28.03 E-value=3.5e+02 Score=28.89 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhH-HHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHHhh
Q 021755 7 FVGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPY-ITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLY 85 (308)
Q Consensus 7 ivG~la~i~si~m~~SPlp~~~~I~k~Kst~~~s~lp~-v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~vy 85 (308)
++|++| .+.+..=.+-|.....|+|.. .-|..| ...++++++=+.|++..+| +..+..+++|.+..+=-+.+.
T Consensus 142 ~~G~~~---q~~f~~Rf~~Qw~~se~~~~s--~~p~~FW~~s~~G~~~~l~Y~i~r~d-pv~i~g~~~g~~~y~rnl~li 215 (608)
T PRK01021 142 LIGCIG---LTIFSLRFFIQWFYLEYNNQS--ALPALFWKASLLGGSLALLYFIRTGD-PVNILCYGCGLFPSLANLRIA 215 (608)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHhHHHHHHHHHHhCC-ceEEEccccchhHHHHHHHHH
Confidence 444444 444434445565555555542 223334 6899999999999999998 667888999999876555443
No 50
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=27.77 E-value=1.8e+02 Score=27.88 Aligned_cols=198 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHHhhheecCCcch-----hHHHHHHHHHHHHHHHHHHh
Q 021755 40 KGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKK-----VKTAKLVAILDVGFLGAVIA 114 (308)
Q Consensus 40 s~lp~v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~vy~~Y~~~k~k-----~~~~~~v~~~~~~~l~~~~l 114 (308)
+.+|.....+-+.+-..+|++.++ ..-..|-+-.-+.+-.++..-........ ........+..++.+.+..+
T Consensus 5 ~i~~i~~ii~~G~~~~~~~~l~~~--~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (385)
T PF03547_consen 5 AILPIFLIILLGYLLGRFGILDPE--ASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLGFL 82 (385)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhheeeccccchhhhhHHHHHHHHHHhhcchhhhhhhhccCcccccChHHHHHHHHhhHHHHhhhhcccCeeeEechhHH
Q 021755 115 ITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGVPNAVG 194 (308)
Q Consensus 115 v~~~~~~~~~~~~~lG~ia~~~si~~y~SPL~~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll~~D~fI~ipN~iG 194 (308)
+..+...+......+...|...+...++ ++-+.....++.... ..+...+++++|..+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~N~~~lg--lpi~~~l~g~~~~~~----~~~~~~~~~i~~~~~~~-------------- 142 (385)
T PF03547_consen 83 LSRLFRLPKEWRGVFVLAASFGNTGFLG--LPILQALFGERGVAY----AIIFDVVNNIILWSLGY-------------- 142 (385)
T ss_pred HHHhcCCCcccceEEEecccCCcchhhH--HHHHHHHhcchhhhh----ehHHHHhhHHHHHHHHH--------------
Q ss_pred HHHHHHHHhhheeecCCCCCCCCCCChhhhhccCcccccccccccCCCCCCccchHHHhchhcccccccccccC
Q 021755 195 FVLGAAQLILYMIYKNKTPLPTKSMDSVKERSAHKVKDGIEMGARGDDHDNQEDDLEEANGKKKRTLRQGKSLP 268 (308)
Q Consensus 195 ~~l~~~Ql~l~~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (308)
..+.+++.+.+..+...+..++..+.-++.-|.....+.+...|++.++........-+.+.+.+
T Consensus 143 ---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (385)
T PF03547_consen 143 ---------FLLESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAP 207 (385)
T ss_pred ---------HhhcccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccc
No 51
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.51 E-value=4.2e+02 Score=23.61 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHHHhhHHHHhhhh----cccCeeeEechhHHHHHHHHHHhhheeecCCCCC
Q 021755 166 FFLFLNAGVWSVYSV----LVKDIYIGVPNAVGFVLGAAQLILYMIYKNKTPL 214 (308)
Q Consensus 166 ~~~~ln~~lW~~YGl----l~~D~fI~ipN~iG~~l~~~Ql~l~~iY~~~~~~ 214 (308)
+...+..++|.+--. +-.-+...+|+.+.+++|++-+.+++.++++-+.
T Consensus 151 ~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i 203 (206)
T PF06570_consen 151 LISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNI 203 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334455556642211 2244556789999999999999998777766443
No 52
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=24.87 E-value=1.9e+02 Score=29.92 Aligned_cols=22 Identities=9% Similarity=0.230 Sum_probs=11.1
Q ss_pred chhHHHHHHHHHHhhheeecCC
Q 021755 190 PNAVGFVLGAAQLILYMIYKNK 211 (308)
Q Consensus 190 pN~iG~~l~~~Ql~l~~iY~~~ 211 (308)
|..+.+++.+..+++...+-++
T Consensus 210 p~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred HHHHHHHHHHHHHHHHHhheee
Confidence 4455555555555554444333
No 53
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=24.44 E-value=5.8e+02 Score=28.54 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhccCC
Q 021755 45 ITTLMSTCLWTFYGVMKPG 63 (308)
Q Consensus 45 v~~~ln~~lWl~YGll~~d 63 (308)
.-..+.|.+|.+|=.+.+.
T Consensus 86 ~YI~~~~l~W~lYfav~~r 104 (1318)
T KOG3618|consen 86 FYIGFACLLWSLYFAVHMR 104 (1318)
T ss_pred HHHHHHHHHHHHHheeccC
Confidence 3456778999999877654
No 54
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=23.90 E-value=9.3e+02 Score=25.92 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHhcCCCCc
Q 021755 10 IIGNVISLLVFASPIKTFWQIVKKKSTESY 39 (308)
Q Consensus 10 ~la~i~si~m~~SPlp~~~~I~k~Kst~~~ 39 (308)
++|..++..+ =+|++.....++.++.-
T Consensus 221 ilg~~lsa~~---llP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 221 ILGVGLSAFL---LLPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHHH---HHHHHHHHHhCCCccCC
Confidence 3444444433 37888888888777764
No 55
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=23.76 E-value=4.1e+02 Score=23.80 Aligned_cols=33 Identities=3% Similarity=0.193 Sum_probs=23.1
Q ss_pred HHHHhcCCCCccchhH--HHHHHHHHHHHHHhhcc
Q 021755 29 QIVKKKSTESYKGVPY--ITTLMSTCLWTFYGVMK 61 (308)
Q Consensus 29 ~I~k~Kst~~~s~lp~--v~~~ln~~lWl~YGll~ 61 (308)
|-.++++...+|+... ..++....+|..-+++-
T Consensus 7 ~~eq~~~~~~~s~~~~~~~iGf~gGliWs~v~yl~ 41 (173)
T PF11085_consen 7 RLEQNQREKPMSFLAKVLEIGFFGGLIWSLVRYLA 41 (173)
T ss_pred hhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677776655 57888899998877755
No 56
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=23.67 E-value=5.6e+02 Score=25.41 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=6.8
Q ss_pred HHHHHHHhhheeecCC
Q 021755 196 VLGAAQLILYMIYKNK 211 (308)
Q Consensus 196 ~l~~~Ql~l~~iY~~~ 211 (308)
+.+++.++..+..|..
T Consensus 417 ~~~~i~~~~~~~~pes 432 (490)
T PRK10642 417 VVAVIGLITGVTMKET 432 (490)
T ss_pred HHHHHHHHHHHHhccc
Confidence 3444444444434443
No 57
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=23.43 E-value=9.2e+02 Score=25.72 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=35.7
Q ss_pred hhhHHHHH--HHHHHhhcchhhhhhhhccCccccc----------ChHHHHHHHHhhHHHHhhhhcccCe-eeEechhHH
Q 021755 128 FVGILCAA--LTIGMYASPLAVMTTVIRTKSVKYM----------PFLLSFFLFLNAGVWSVYSVLVKDI-YIGVPNAVG 194 (308)
Q Consensus 128 ~lG~ia~~--~si~~y~SPL~~i~~ViktKs~~~m----------p~~~~~~~~ln~~lW~~YGll~~D~-fI~ipN~iG 194 (308)
++|-++.+ +++.||+ .+++++++.++...- -.......++-++-| ++|++.-.. .-.+.-.+-
T Consensus 474 F~GPv~~ii~~Ni~~Fv---~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~L~~lLGlTW-~fgi~s~~~~~~~v~~YlF 549 (610)
T KOG4193|consen 474 FLGPVTLIILVNIVMFV---VTLKKLLRRLSKLQPIASKLENISLIRSALALLFLLGLTW-IFGIFSWLPGTSVVFAYLF 549 (610)
T ss_pred EehHHHHHHHHHHHHHH---HHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccchHHHHHH
Confidence 35555543 3456664 445555555443222 223334556788889 677776322 222223344
Q ss_pred HHHHHHHH
Q 021755 195 FVLGAAQL 202 (308)
Q Consensus 195 ~~l~~~Ql 202 (308)
.+++..|=
T Consensus 550 ti~NalQG 557 (610)
T KOG4193|consen 550 TIFNALQG 557 (610)
T ss_pred HHHHHhhh
Confidence 55666664
No 58
>COG3952 Predicted membrane protein [Function unknown]
Probab=23.41 E-value=3.3e+02 Score=22.58 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=36.7
Q ss_pred CCCCccchhH-HHHHHHHHHHHHHhhccCCceEEEehhhHHHHHHHHHHHhhhe
Q 021755 35 STESYKGVPY-ITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLI 87 (308)
Q Consensus 35 st~~~s~lp~-v~~~ln~~lWl~YGll~~d~~~V~~~N~iG~vl~~iyl~vy~~ 87 (308)
+...+ |.+| -+.++++.+=+.|-+.++| ..-+..|+.|+..++.-+.+...
T Consensus 52 ~rsv~-P~~FW~~sllGg~l~L~Yfi~~~D-pV~Vl~~~~glF~~l~nL~L~~k 103 (113)
T COG3952 52 NRSVI-PVLFWYFSLLGGLLLLSYFIRRQD-PVFVLGQACGLFIYLRNLWLIIK 103 (113)
T ss_pred CCCcc-hHHHHHHHHHhhHHHHHHHHHhcc-hHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344 3444 5889999999999999998 44467788888887766655543
No 59
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=22.93 E-value=6.7e+02 Score=25.40 Aligned_cols=15 Identities=7% Similarity=-0.235 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhheec
Q 021755 75 AALQFIYVSLYLIYA 89 (308)
Q Consensus 75 ~vl~~iyl~vy~~Y~ 89 (308)
+++..+|-.--.+..
T Consensus 156 lLvDFah~wne~w~~ 170 (429)
T PF03348_consen 156 LLVDFAHSWNESWVE 170 (429)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555556655544443
No 60
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=22.60 E-value=1.5e+02 Score=27.95 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHhcC---CCCccchhHH------HHHHHHHHHHHHhhccCCceEEEehh
Q 021755 5 SFFVGIIGNVISLLVFASPIKTFWQIVKKKS---TESYKGVPYI------TTLMSTCLWTFYGVMKPGGLVVATVN 71 (308)
Q Consensus 5 ~~ivG~la~i~si~m~~SPlp~~~~I~k~Ks---t~~~s~lp~v------~~~ln~~lWl~YGll~~d~~~V~~~N 71 (308)
..++|++.++++=+++.+-+.-+.-+..+.+ ..+-+.+.|+ ..+.++..+++|.+..+| -|-+.+|
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn-~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRN-KPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcC-CCCCCCC
Confidence 3578998888888888887777766665552 2223334443 455566778889988887 4444444
No 61
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=21.33 E-value=5.5e+02 Score=25.19 Aligned_cols=50 Identities=10% Similarity=0.198 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcHHHHHHH-HHhcCCCCccchhHHHHHHHHHHHHHHhhccC
Q 021755 13 NVISLLVFASPIKTFWQI-VKKKSTESYKGVPYITTLMSTCLWTFYGVMKP 62 (308)
Q Consensus 13 ~i~si~m~~SPlp~~~~I-~k~Kst~~~s~lp~v~~~ln~~lWl~YGll~~ 62 (308)
.+..+++.++=+..+.|+ .|+|.-.-+...-++++.+...+|.++-+...
T Consensus 168 lis~~~l~l~qvqiv~rlF~R~~eK~~i~~vG~~L~i~~~il~ai~~f~~~ 218 (348)
T PF08733_consen 168 LISNFFLQLAQVQIVIRLFPRQKEKRIIFWVGFILIILDQILWAINQFSYF 218 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCcEEEEeeHHHHHHHHHHHHHHHHHhccC
Confidence 344556667778888888 66666666677788899999999999986553
No 62
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.65 E-value=1e+02 Score=20.99 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhheeecCCC
Q 021755 193 VGFVLGAAQLILYMIYKNKT 212 (308)
Q Consensus 193 iG~~l~~~Ql~l~~iY~~~~ 212 (308)
+|.+.-..-+++|++|+++|
T Consensus 21 V~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred hHHHHHHHHHHhheEEeccC
Confidence 34444455566777788764
No 63
>PF05250 UPF0193: Uncharacterised protein family (UPF0193); InterPro: IPR007914 This family of proteins is functionally uncharacterised.
Probab=20.41 E-value=44 Score=30.80 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=19.6
Q ss_pred cchHHHhchhc-ccccccccccCCCCCC
Q 021755 247 EDDLEEANGKK-KRTLRQGKSLPKPTLG 273 (308)
Q Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 273 (308)
|.|++..|||. +.++++|.+||.|..+
T Consensus 37 ESKLT~fQqr~i~~~lk~G~aLP~~~~P 64 (212)
T PF05250_consen 37 ESKLTNFQQRQIMDSLKRGEALPLPCSP 64 (212)
T ss_pred HccCcHHHHHHHHHhccCCCCCCCCCCC
Confidence 55667776543 5689999999988543
Done!