Query 021755
Match_columns 308
No_of_seqs 197 out of 1426
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 45.5 28 0.00094 33.1 5.7 10 172-181 419-428 (511)
2 2k3u_B C5AR(P7-28S) peptide, c 42.1 6.9 0.00023 22.7 0.5 8 298-305 6-13 (26)
3 3l1l_A Arginine/agmatine antip 25.8 1.2E+02 0.0042 27.8 6.5 22 193-214 412-433 (445)
4 3tlw_A GLR4197 protein, GLIC; 24.4 3.2E+02 0.011 24.4 9.0 21 126-146 256-276 (321)
5 2ovm_B NCOR, progesterone rece 15.1 79 0.0027 18.5 1.6 20 265-286 2-21 (26)
6 3b9w_A Ammonium transporter fa 9.3 1.1E+03 0.039 22.2 9.2 18 124-141 260-277 (407)
7 2nr1_A NR1 M2, M2; receptor, s 8.6 1.1E+02 0.0039 18.2 0.8 14 170-183 9-22 (27)
8 2j85_A STIV B116; viral protei 7.0 1.8E+02 0.006 23.5 1.5 29 273-302 93-121 (122)
9 2i68_A Protein EMRE; transmemb 6.8 6.9E+02 0.024 19.8 5.1 27 178-204 74-100 (137)
10 4djk_A Probable glutamate/gamm 6.7 1.1E+03 0.037 21.7 7.3 13 70-82 415-427 (511)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=45.50 E-value=28 Score=33.09 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=4.8
Q ss_pred hHHHHhhhhc
Q 021755 172 AGVWSVYSVL 181 (308)
Q Consensus 172 ~~lW~~YGll 181 (308)
+++|+++.+.
T Consensus 419 ~~~~~~~~~~ 428 (511)
T 4djk_A 419 GLLTSIMAFI 428 (511)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555444
No 2
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=42.06 E-value=6.9 Score=22.72 Aligned_cols=8 Identities=75% Similarity=1.431 Sum_probs=7.1
Q ss_pred hcccCCCC
Q 021755 298 YHHYDDSD 305 (308)
Q Consensus 298 ~~~~~~~~ 305 (308)
|-||||.|
T Consensus 6 yghyddkd 13 (26)
T 2k3u_B 6 YGHYDDKD 13 (26)
T ss_dssp CCEECSSS
T ss_pred ccccCCcc
Confidence 78999987
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=25.83 E-value=1.2e+02 Score=27.79 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhheeecCCCCC
Q 021755 193 VGFVLGAAQLILYMIYKNKTPL 214 (308)
Q Consensus 193 iG~~l~~~Ql~l~~iY~~~~~~ 214 (308)
.|+.+-..=+.+|++++++++.
T Consensus 412 ~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 412 WSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHhhhccc
Confidence 3444445555566666655543
No 4
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=24.38 E-value=3.2e+02 Score=24.38 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHhhcchh
Q 021755 126 LTFVGILCAALTIGMYASPLA 146 (308)
Q Consensus 126 ~~~lG~ia~~~si~~y~SPL~ 146 (308)
...+|..-.++.+++++|=+.
T Consensus 256 vp~i~~~~~~~~~~v~~sll~ 276 (321)
T 3tlw_A 256 MTYTGAIIFMIYLFYFVAVIE 276 (321)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 456676655555666655444
No 5
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=15.13 E-value=79 Score=18.53 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=13.6
Q ss_pred cccCCCCCCCCCChhhhhhhhc
Q 021755 265 KSLPKPTLGKQFSIPKILKKTA 286 (308)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~ 286 (308)
+|.|.|+ ..+|+..+|.|.|
T Consensus 2 ~s~~e~~--~~~gleaiirkal 21 (26)
T 2ovm_B 2 HSFADPA--SNLGLEDIIRKAL 21 (26)
T ss_pred CCCCCCc--cccCHHHHHHHHH
Confidence 3445444 3778988888876
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=9.28 E-value=1.1e+03 Score=22.25 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=11.9
Q ss_pred cchhhhhHHHHHHHHHHh
Q 021755 124 LRLTFVGILCAALTIGMY 141 (308)
Q Consensus 124 ~~~~~lG~ia~~~si~~y 141 (308)
-...++|.++.+++...+
T Consensus 260 ~~A~iIG~iaG~i~~~~~ 277 (407)
T 3b9w_A 260 VGAFVIGLLGGAISVVGF 277 (407)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345567888877766554
No 7
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=8.59 E-value=1.1e+02 Score=18.19 Aligned_cols=14 Identities=29% Similarity=0.786 Sum_probs=10.4
Q ss_pred HhhHHHHhhhhccc
Q 021755 170 LNAGVWSVYSVLVK 183 (308)
Q Consensus 170 ln~~lW~~YGll~~ 183 (308)
+.+.+|+.+|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 45678999998763
No 8
>2j85_A STIV B116; viral protein, archaeal virus, crenarchaeal virus, STI archaea, crenarchaea, sulfolobus turreted icosa virus; 2.39A {Sulfolobus turreted icosahedral virus} SCOP: d.321.1.1
Probab=7.05 E-value=1.8e+02 Score=23.47 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=21.4
Q ss_pred CCCCChhhhhhhhcccCccccccchhcccC
Q 021755 273 GKQFSIPKILKKTASLGPYDLYSSWYHHYD 302 (308)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (308)
|.-++ ++.|.|-...+......+||||..
T Consensus 93 G~vl~-~eEi~kiye~g~i~~~~~~~~~~~ 121 (122)
T 2j85_A 93 GKVLS-DKEIKDMYRQGKISFYEVWHHHHH 121 (122)
T ss_dssp SCCCC-HHHHHHHHHTTSEEEEEEEEC---
T ss_pred CccCC-HHHHHHHHHhcceeeeeeehhccC
Confidence 44445 468999999999999999999863
No 9
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=6.76 E-value=6.9e+02 Score=19.79 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=10.2
Q ss_pred hhhcccCeeeEechhHHHHHHHHHHhh
Q 021755 178 YSVLVKDIYIGVPNAVGFVLGAAQLIL 204 (308)
Q Consensus 178 YGll~~D~fI~ipN~iG~~l~~~Ql~l 204 (308)
.|.+.-+-.+-....+|+.+-+.=+++
T Consensus 74 ~g~l~lgE~ls~~~~~Gi~LIi~GV~l 100 (137)
T 2i68_A 74 LSWGFFGQRLDLPAIIGMMLICAGVLI 100 (137)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 333333333345567776654444433
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=6.67 E-value=1.1e+03 Score=21.66 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHH
Q 021755 70 VNGAGAALQFIYV 82 (308)
Q Consensus 70 ~N~iG~vl~~iyl 82 (308)
.|.+|++..++.+
T Consensus 415 ~~~~~~~~~~~~~ 427 (511)
T 4djk_A 415 VAIVGLLTSIMAF 427 (511)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555544433
Done!