Query 021755
Match_columns 308
No_of_seqs 197 out of 1426
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 08:49:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021755.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021755hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 12.7 74 0.0054 17.6 2.4 20 71-90 8-27 (30)
2 d1xioa_ f.13.1.1 (A:) Sensory 6.6 5.2E+02 0.038 19.8 9.1 34 147-181 149-182 (226)
3 d2fd5a1 a.4.1.9 (A:1-76) Proba 5.9 60 0.0043 21.0 0.1 24 276-304 28-51 (76)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 5.7 1.5E+02 0.011 15.9 1.7 11 49-59 3-13 (26)
5 d2id3a1 a.4.1.9 (A:13-80) Puta 5.5 34 0.0025 22.0 -1.4 20 281-304 31-50 (68)
6 d1vf5c3 f.23.23.1 (C:250-286) 5.0 2.2E+02 0.016 16.6 2.3 16 145-160 18-33 (37)
7 d2hlja1 d.38.1.1 (A:1-156) Hyp 4.6 1E+02 0.0075 22.4 0.8 21 259-279 134-155 (156)
8 d1rkla_ f.23.30.1 (A:) Oligosa 4.6 1.4E+02 0.01 17.1 1.1 19 191-209 8-26 (36)
9 d1z0xa1 a.4.1.9 (A:4-71) Trans 4.6 56 0.0041 20.9 -0.8 23 277-304 25-47 (68)
10 d1kcpa_ g.3.6.1 (A:) Conotoxin 4.5 96 0.007 16.6 0.4 8 297-304 8-15 (27)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.67 E-value=74 Score=17.58 Aligned_cols=20 Identities=5% Similarity=0.250 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHhhheecC
Q 021755 71 NGAGAALQFIYVSLYLIYAP 90 (308)
Q Consensus 71 N~iG~vl~~iyl~vy~~Y~~ 90 (308)
-.+.+++++++..+|++-++
T Consensus 8 ~ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 8 FIFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 34667777777777776544
No 2
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=6.59 E-value=5.2e+02 Score=19.84 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=18.8
Q ss_pred hhhhhhccCcccccChHHHHHHHHhhHHHHhhhhc
Q 021755 147 VMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVL 181 (308)
Q Consensus 147 ~i~~ViktKs~~~mp~~~~~~~~ln~~lW~~YGll 181 (308)
..++..++++.+. .........+..++|.+|++.
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 149 PLRAKTRTQSSEL-ANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHHTTSCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444322 223334455667799999876
No 3
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.92 E-value=60 Score=21.02 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=15.0
Q ss_pred CChhhhhhhhcccCccccccchhcccCCC
Q 021755 276 FSIPKILKKTASLGPYDLYSSWYHHYDDS 304 (308)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (308)
+++. .|-+....+. +++|+||++.
T Consensus 28 ~si~-~Ia~~agvs~----~t~Y~~F~~K 51 (76)
T d2fd5a1 28 PSVG-EVMGAAGLTV----GGFYAHFQSK 51 (76)
T ss_dssp CCHH-HHHHHTTCCG----GGGGGTCSCH
T ss_pred ccHH-HHHHHhCCCc----cchhhcCCCH
Confidence 3444 5555555553 6788888864
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.67 E-value=1.5e+02 Score=15.92 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=6.0
Q ss_pred HHHHHHHHHhh
Q 021755 49 MSTCLWTFYGV 59 (308)
Q Consensus 49 ln~~lWl~YGl 59 (308)
.+..+|+.|++
T Consensus 3 aslaiw~fw~f 13 (26)
T d1rzhh2 3 ASLAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34456666654
No 5
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.54 E-value=34 Score=22.01 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=11.6
Q ss_pred hhhhhcccCccccccchhcccCCC
Q 021755 281 ILKKTASLGPYDLYSSWYHHYDDS 304 (308)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ 304 (308)
.|-+.+..++ +.+|+||.|.
T Consensus 31 ~Ia~~agvs~----~~iY~~F~~k 50 (68)
T d2id3a1 31 EIARRAGVGK----TTVYRRWGTP 50 (68)
T ss_dssp HHHHHHTCCH----HHHHHHHCSH
T ss_pred HHHHHHCcCH----HHHHHHCcCH
Confidence 4444444443 5678888764
No 6
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.96 E-value=2.2e+02 Score=16.59 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=10.7
Q ss_pred hhhhhhhhccCccccc
Q 021755 145 LAVMTTVIRTKSVKYM 160 (308)
Q Consensus 145 L~~i~~ViktKs~~~m 160 (308)
+.|+--|+|+|..|-.
T Consensus 18 laQi~lVlKKKQ~EkV 33 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKV 33 (37)
T ss_dssp HHHHHHHHHTGGGCTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777776654
No 7
>d2hlja1 d.38.1.1 (A:1-156) Hypothetical protein PP0301 {Pseudomonas putida [TaxId: 303]}
Probab=4.64 E-value=1e+02 Score=22.41 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=13.5
Q ss_pred cccccccccCCCCC-CCCCChh
Q 021755 259 RTLRQGKSLPKPTL-GKQFSIP 279 (308)
Q Consensus 259 ~~~~~~~~~~~~~~-~~~~~~~ 279 (308)
.-+++.+++|.|.- |+..|+|
T Consensus 134 ~~~~~~~~~~~p~~~~~~i~~~ 155 (156)
T d2hlja1 134 HLVEQQEGAQAPQYMGRTIKLP 155 (156)
T ss_dssp HHHHTTTTSCCCSSCSCCCCCC
T ss_pred HHHHhccCCCChHHcCCcCcCC
Confidence 44566689999875 5544544
No 8
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.61 E-value=1.4e+02 Score=17.14 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHhhheeec
Q 021755 191 NAVGFVLGAAQLILYMIYK 209 (308)
Q Consensus 191 N~iG~~l~~~Ql~l~~iY~ 209 (308)
|.+.+.+|+.-+.+..+|.
T Consensus 8 n~~~i~fgi~mmtliviyh 26 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYH 26 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHh
Confidence 8888889999888888885
No 9
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.59 E-value=56 Score=20.94 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=14.2
Q ss_pred ChhhhhhhhcccCccccccchhcccCCC
Q 021755 277 SIPKILKKTASLGPYDLYSSWYHHYDDS 304 (308)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (308)
++. .|-+.+..+ .+.+|+||++-
T Consensus 25 t~~-~Ia~~agvs----~~~iy~hF~~K 47 (68)
T d1z0xa1 25 SMR-KVAKQLGVQ----APAIYWYFKNK 47 (68)
T ss_dssp CHH-HHHHHHTSC----HHHHHTTCSSH
T ss_pred CHH-HHHHHHCcc----hhHHHHhcCCH
Confidence 444 555555554 46788898764
No 10
>d1kcpa_ g.3.6.1 (A:) Conotoxin {Conus purpurascens, kappa-pVIIa [TaxId: 41690]}
Probab=4.53 E-value=96 Score=16.61 Aligned_cols=8 Identities=38% Similarity=0.866 Sum_probs=5.6
Q ss_pred hhcccCCC
Q 021755 297 WYHHYDDS 304 (308)
Q Consensus 297 ~~~~~~~~ 304 (308)
-+||.||-
T Consensus 8 cfqhlddc 15 (27)
T d1kcpa_ 8 CFQHLDDC 15 (27)
T ss_dssp CCTTCCCB
T ss_pred HHHHHHHH
Confidence 46888873
Done!