BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021756
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 75.9 bits (185), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGL 85
G W+ +ENK FE ALAVYDKDTPDRW VA + G+T +V K Y+ L ED+ IE+G
Sbjct: 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGK 67
Query: 86 IPIPGY 91
+P P Y
Sbjct: 68 VPFPNY 73
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAG 84
T WT +E K E AL Y +TP+RW K+A +PG+T D +K+YKEL E V +A
Sbjct: 4 TPWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 61
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELE 75
G W EN FE AL+ +KDTPDRW KVA + G+T +V K Y ELE
Sbjct: 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY-ELE 68
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDK 191
V WT EE F GL KFG+ W IS+ + +RT QV S+A++YF ++ G DK
Sbjct: 10 VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDK 64
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDV 67
KWT +E + FE LA + + RW K++ +I +TV V
Sbjct: 10 VKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQV 46
>pdb|2CQQ|A Chain A, Solution Structure Of Rsgi Ruh-037, A Myb Dna-Binding
Domain In Human Cdna
Length = 72
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIP 87
+WT ++ Q ++ + TP RW K+A + G++V DV + K+L++ V+ G++
Sbjct: 10 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT-CSPGMVS 67
Query: 88 IPGYG 92
P G
Sbjct: 68 GPSSG 72
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 36.2 bits (82), Expect = 0.023, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74
WT + K E AL Y + + D W K+A +P K+ D I +YK L
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 66
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTG 187
WT +E L + G G+W++++ N + T+T + H KYF+ +G
Sbjct: 11 WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSGPSSG 60
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 121 GSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNF 164
GS S K WT EE G++K+G+G+W IS+N+
Sbjct: 1 GSHMEDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY 44
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGG 188
WT EE + +++ G DW+ I+ N++ RT Q QK N +L G
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNPELIKG 59
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 18 NWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKT 63
N L E K T WT +E++ A K +RW ++A ++PG+T
Sbjct: 102 NHLNPEVKKTSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRT 143
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNF 164
WT EE G++K+G+G+W IS+N+
Sbjct: 13 WTVEESEWVKAGVQKYGEGNWAAISKNY 40
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNF 164
WT EE G++K+G+G+W IS+N+
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNY 41
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTG 187
V WT EE Q +++FG+ DW+ F+ + P + Q + R L+G
Sbjct: 9 VKWTHEEDEQLRALVRQFGQQDWK-----FLASHFPNRTDQQCQYRWLRVLSG 56
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNF 164
WT EE G++K+G+G+W IS+N+
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNY 41
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNF-VTTRTPTQV 173
WT EE G++K+G+G+W IS+N+ RT +
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42
>pdb|2NOG|A Chain A, Sant Domain Structure Of Xenopus Remodeling Factor Iswi
pdb|2NOG|B Chain B, Sant Domain Structure Of Xenopus Remodeling Factor Iswi
Length = 173
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183
W + + QF+ +K+G+ D NI+R V +TP +V ++ ++ R
Sbjct: 93 WNKRDFNQFIKANEKWGRDDIENIARE-VEGKTPEEVIEYSAVFWER 138
>pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase
Length = 304
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183
WT+ + QF+ +K+G+ D NI+++ V +TP +V + ++ R
Sbjct: 113 WTKRDFNQFIKANEKYGRDDIDNIAKD-VEGKTPEEVIEYNAVFWER 158
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNI 160
WT+EE + L+G+ K+G G W I
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNI 160
WT+EE + L+G+ K+G G W I
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 43 VYDKDTPDRWIKVAAMIPGKTVGDVIK-QYKELEEDVSDIEAG-LIPIPGYGNDSFTLEW 100
+ D+D+ D ++K+ M PG +V D I E E ++ G I P GN L
Sbjct: 23 IVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAM 82
Query: 101 VDSNQGYDGL 110
V + +GY +
Sbjct: 83 VAAAKGYKAV 92
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN 182
V +TEEE + + ++G DW IS+ + TR P Q Y N
Sbjct: 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYIN 48
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
Length = 105
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 18 NWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKT 63
N L E K T WT +E++ A K +RW ++A ++PG+T
Sbjct: 48 NHLNPEVKKTSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRT 89
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 137 WTEEEHRQFLMGLKKFGKGD-----WRNISRNFVTTRTPTQVASHAQKYFNRQLTGG 188
WT EE ++ L K+ + W+ I+ + + RT QVAS QKYF + G
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLTKAG 66
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 18 NWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKT 63
N L E K T WT +E++ A K +RW ++A ++PG+T
Sbjct: 48 NHLNPEVKKTSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRT 89
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20
Structures
Length = 54
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 23 ESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKT 63
E K T WT +E++ A K +RW ++A ++PG+T
Sbjct: 2 EVKKTSWTEEEDRILYQA----HKRLGNRWAEIAKLLPGRT 38
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 18 NWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKT 63
N L E K T WT +E++ A K +RW ++A ++PG+T
Sbjct: 71 NHLNPEVKKTSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRT 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,463,702
Number of Sequences: 62578
Number of extensions: 406691
Number of successful extensions: 662
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 56
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)