BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021756
(308 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 339 bits (869), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 179/307 (58%), Positives = 222/307 (72%), Gaps = 8/307 (2%)
Query: 5 IEILSPASYLENSNWLFQESKGT-KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKT 63
+EIL+P+SY +S+W +ES+ T +WT ENK FENALAV+D++TP+RW +VA +PGKT
Sbjct: 1 MEILAPSSYFSSSSWFLEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKT 60
Query: 64 VGDVIKQYKELEEDVSDIEAGLIPIPGYGNDS-FTLEWVDSNQGYDGLKNFYGPGGKRGS 122
VGDV++QYKELE+DVS IEAG +P+PGY S FTLEW S G+DG K YG GG++ S
Sbjct: 61 VGDVMRQYKELEDDVSSIEAGFVPVPGYSTSSPFTLEW-GSGHGFDGFKQSYGTGGRKSS 119
Query: 123 STRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN 182
S RPS+QERKKGVPWTEEEH+ FLMGLKK+GKGDWRNISRNFV TRTPTQVASHAQKYF
Sbjct: 120 SGRPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFI 179
Query: 183 RQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMSNEQ 242
RQL+GGKDKRR+SIHDITTVNL + T S +N KPPS SP ++ QQQ + +
Sbjct: 180 RQLSGGKDKRRASIHDITTVNLSDNQTPSPDNKKPPS-SPDHSMA--QQQTSSTSIHKLP 236
Query: 243 FNWKSQNEGTAMLFNS--MNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYF 300
F W + T M F S +G F + G++SYG K+Q Q + G + G+ + F
Sbjct: 237 FQWDQTSNETIMGFASSGHHGNMFQSNPFGMNSYGFKMQGQQMQRGGFCDTYLGSQNMAF 296
Query: 301 QMQSMQH 307
QMQS H
Sbjct: 297 QMQSGLH 303
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
Length = 297
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 68/90 (75%)
Query: 127 SDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLT 186
S +ERK+GVPWTEEEH+ FL+GL+K GKGDWR ISRNFV TRTPTQVASHAQKYF R+
Sbjct: 87 SGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSN 146
Query: 187 GGKDKRRSSIHDITTVNLDETATSSSENNK 216
+ +RRSS+ DITT ++ EN +
Sbjct: 147 LNRRRRRSSLFDITTDSVSVMPIEEVENKQ 176
>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
Length = 97
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPI 88
WT +NK FE ALAVYDKDTPDRW VA + GKTV +V + Y L ED+ +IE G +P+
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71
Query: 89 PGY 91
P Y
Sbjct: 72 PNY 74
>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1
SV=1
Length = 93
Score = 75.5 bits (184), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGL 85
G W+ +ENK FE ALAVYDKDTPDRW VA + G+T +V K Y+ L ED+ IE+G
Sbjct: 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGK 67
Query: 86 IPIPGY 91
+P P Y
Sbjct: 68 VPFPNY 73
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 121 GSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180
G T P+ ++ WT+EEH +FL G++ GKG W+ I++ FV TRTPTQ+ SHAQKY
Sbjct: 363 GGKTNPTGKKTSLKQGWTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKY 421
Query: 181 FNRQLTGGKDKRRSSIHDITTVNL 204
+ RQ K+KR SIHD++ +L
Sbjct: 422 YLRQKQETKNKR--SIHDLSLQDL 443
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1
Length = 100
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPI 88
WT ++NK FE ALA YD+DTP+RW VA ++ GKT +V + Y+ L +D++ IE G +P
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73
Query: 89 PGY 91
P Y
Sbjct: 74 PNY 76
>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1
Length = 101
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPI 88
WT ++NK FE ALAVYD+DTPDRW VA + GKT + +QY L D+ IE G +P
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73
Query: 89 PGY 91
P Y
Sbjct: 74 PDY 76
>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1
Length = 77
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 32 QENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGY 91
+E+KQFE ALA +DKDTPDRW K+A + GK+ +V + Y+ L DV+DIE+G P P Y
Sbjct: 14 REDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQPRY 73
Query: 92 GN 93
N
Sbjct: 74 RN 75
>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1
Length = 81
Score = 69.7 bits (169), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 43/63 (68%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPI 88
WT +ENK FE ALA YD+DTPDRW VA + GK+ +V + Y+ L DV+DIE+G P
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYPH 71
Query: 89 PGY 91
P Y
Sbjct: 72 PNY 74
>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1
Length = 100
Score = 67.8 bits (164), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 32 QENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGY 91
++NK FE ALAVYDKDTPDRW VA + K+ +V + Y L ED+ +IE L+P+P Y
Sbjct: 15 KQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPLPKY 74
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 129 QERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183
+++K+ WT EEH +F+ L K+G D ++IS+ +V+TR PTQV +HAQKYF R
Sbjct: 167 EKKKQSRYWTPEEHSRFIEALSKYGHKDVKSISQ-YVSTRNPTQVRTHAQKYFLR 220
>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1
Length = 621
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAG 84
T WT +E K E AL Y +TP+RW K+A +PG+T D +K+YKEL E V +A
Sbjct: 552 TPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 609
>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2
PE=2 SV=1
Length = 621
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAG 84
T WT +E K E AL Y +TP+RW K+A +PG+T D +K+YKEL E V +A
Sbjct: 552 TPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 609
>sp|Q99543|DNJC2_HUMAN DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1
SV=4
Length = 621
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAG 84
T WT +E K E AL Y +TP+RW K+A +PG+T D +K+YKEL E V +A
Sbjct: 552 TPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 609
>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1
SV=2
Length = 621
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAG 84
T WT +E K E AL Y +TP+RW K+A +PG+T D +++YKEL E V +A
Sbjct: 551 STPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMRRYKELVEMVKAKKAA 609
>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2
PE=2 SV=1
Length = 621
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAG 84
WT +E K E AL Y +TP+RW K+A +PG+T D +++YKEL E V +A
Sbjct: 554 WTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMRRYKELVEMVKAKKAA 609
>sp|Q6P2Y3|DNJC2_XENTR DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2
PE=2 SV=2
Length = 620
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAG 84
WT +E K E AL Y +TP+RW K+A +PG++ D +K+YKEL E V +A
Sbjct: 553 WTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRSKKDCMKRYKELVEMVKAKKAA 608
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 34/159 (21%)
Query: 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLI 86
+ WT +E + F A +YDKD K+ + KT+ V ++
Sbjct: 151 SSWTKEEERLFVEAYKLYDKDNK----KIQEHVKTKTILQVRSHAQKF------------ 194
Query: 87 PIPGYGNDSFTLEW--VDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQ 144
+ LE + S D L F S PS PW+ EEH
Sbjct: 195 --------ALKLEKNGIKSLDNIDQL--FNQSHAASSSHNLPS-----HNTPWSNEEHEL 239
Query: 145 FLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183
FL ++K+G+G+W+ IS + +R Q+ +HA+ YF++
Sbjct: 240 FLKAIEKYGRGNWKLIS-TLIKSRNTLQIKNHARIYFDK 277
>sp|Q6NWJ4|DNJC2_DANRE DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2
SV=1
Length = 618
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 23 ESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIE 82
+S WT +E K E AL Y T +RW +++ +PG++ D +K+YKEL E + +
Sbjct: 547 DSNAAAWTTEEQKLLEQALKTYPVSTAERWERISEAVPGRSKKDCMKRYKELVEMIKAKK 606
Query: 83 AG 84
A
Sbjct: 607 AA 608
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181
WT+EEH++FL L F + DW+ I +FV ++T Q+ SHAQKYF
Sbjct: 44 WTDEEHQKFLEALTLFDR-DWKKI-ESFVGSKTVIQIRSHAQKYF 86
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTV 64
WT +E+++F AL ++D+D W K+ + + KTV
Sbjct: 44 WTDEEHQKFLEALTLFDRD----WKKIESFVGSKTV 75
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183
WTEEEH +F+ L+ +G+ W+ I + V T+T Q+ SHAQK+F++
Sbjct: 27 WTEEEHNRFIEALRLYGRA-WQKIEEH-VATKTAVQIRSHAQKFFSK 71
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181
WTE+EH +FL L F + DW+ I + FV ++T Q+ SHAQKYF
Sbjct: 64 WTEQEHDKFLEALHLFDR-DWKKI-KAFVGSKTVIQIRSHAQKYF 106
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDV 67
WT QE+ +F AL ++D+D W K+ A + KTV +
Sbjct: 64 WTEQEHDKFLEALHLFDRD----WKKIKAFVGSKTVIQI 98
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183
WTE+EH +FL L+ +G+ W+ I + + T+T Q+ SHAQK+F +
Sbjct: 27 WTEDEHERFLEALRLYGRA-WQRIEEH-IGTKTAVQIRSHAQKFFTK 71
>sp|Q7T105|MIER1_XENLA Mesoderm induction early response protein 1 OS=Xenopus laevis
GN=mier1 PE=2 SV=1
Length = 495
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 33/164 (20%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVA--------SHAQKYFNRQLTGG 188
WTEEE R F GLK +GK D+ I N V TR+ + S +F +Q G
Sbjct: 279 WTEEECRNFEQGLKAYGK-DFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFG 337
Query: 189 KDKR--RSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMSNEQFNWK 246
K K + D LDE+ +++S ++ PSP P+ + Q
Sbjct: 338 KKKYNLHPGVTDYMDRLLDESESATS--SRAPSPPPTTSNSNTSQ--------------- 380
Query: 247 SQNEGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNG 290
S+ E N+ NG + P C I++Y + ++ G +LNG
Sbjct: 381 SEKEDCTASNNTQNGVSVNGP-CAITAYKDEAKQ----GVHLNG 419
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKR- 192
V WT EE F GL KFG+ W IS+ + +RT QV S+A++YF ++ G DK
Sbjct: 118 SVKWTIEEKELFEQGLAKFGRR-WTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKET 175
Query: 193 --RSSIHDITTVNLDE--TATSSSENNKPPSPSPSAAVIQLQQQPKTVDMSNEQFNWKSQ 248
+ + H++ N D+ A + S P+ +A I+ + VD+++E SQ
Sbjct: 176 PNQKTGHNLQVKNEDKGTKAWTPSCLRGRADPNLNAVKIEKLSDDEEVDITDEVDELSSQ 235
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDV 67
S KWT +E + FE LA + + RW K++ +I +TV V
Sbjct: 116 SYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQV 155
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ 184
WT EEH +FL +++FG D+ I++ FV TR QV +H Y Q
Sbjct: 657 WTSEEHNKFLEAVQQFGIKDYHAIAK-FVQTRNHHQVRTHVNTYLKNQ 703
>sp|Q8N108|MIER1_HUMAN Mesoderm induction early response protein 1 OS=Homo sapiens
GN=MIER1 PE=1 SV=2
Length = 512
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVA--------SHAQKYFNRQLTGG 188
WTEEE R F GLK +GK D+ I N V TR+ + S +F +Q G
Sbjct: 288 WTEEECRNFEQGLKAYGK-DFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFG 346
Query: 189 KDK--RRSSIHDITTVNLDETATSSSENNKPPSPSPSAA 225
K K + D LDE+ +++S ++ PSP P+A+
Sbjct: 347 KKKYNLHPGVTDYMDRLLDESESAAS--SRAPSPPPTAS 383
>sp|Q5REE1|MIER1_PONAB Mesoderm induction early response protein 1 OS=Pongo abelii
GN=MIER1 PE=2 SV=2
Length = 512
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVA--------SHAQKYFNRQLTGG 188
WTEEE R F GLK +GK D+ I N V TR+ + S +F +Q G
Sbjct: 288 WTEEECRNFEQGLKAYGK-DFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFG 346
Query: 189 KDK--RRSSIHDITTVNLDETATSSSENNKPPSPSPSAA 225
K K + D LDE+ +++S ++ PSP P+A+
Sbjct: 347 KKKYNLHPGVTDYMDRLLDESESAAS--SRAPSPPPTAS 383
>sp|Q5UAK0|MIER1_MOUSE Mesoderm induction early response protein 1 OS=Mus musculus
GN=Mier1 PE=1 SV=2
Length = 511
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVA--------SHAQKYFNRQLTGG 188
WTEEE R F GLK +GK D+ I N V TR+ + S +F +Q G
Sbjct: 287 WTEEECRNFEQGLKAYGK-DFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFG 345
Query: 189 KDK--RRSSIHDITTVNLDETATSSSENNKPPSPSPSAA 225
K K + D LDE+ +++S ++ PSP P+A+
Sbjct: 346 KKKYNLHPGVTDYMDRLLDESESAAS--SRAPSPPPTAS 382
>sp|Q5ZKT9|MIER1_CHICK Mesoderm induction early response protein 1 OS=Gallus gallus
GN=MIER1 PE=2 SV=1
Length = 513
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVA--------SHAQKYFNRQLTGG 188
WTEEE R F GLK +GK D+ I N V TR+ + S +F +Q G
Sbjct: 290 WTEEECRNFEQGLKVYGK-DFHVIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFG 348
Query: 189 KDK--RRSSIHDITTVNLDETATSSSENNKPPSPSPSA---AVIQLQQQPKTVDMSNE 241
K K + D LDE+ +++S ++ PSP P+A + Q +++ T SN+
Sbjct: 349 KKKYNLHPGVTDYMDRLLDESESAAS--SRAPSPPPTASNSSTSQSEREDSTTSSSNQ 404
>sp|Q61712|DNJC1_MOUSE DnaJ homolog subfamily C member 1 OS=Mus musculus GN=Dnajc1 PE=1
SV=1
Length = 552
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDV 78
WT + K E AL Y K DRW K+A +P K+ D I +YK L E V
Sbjct: 495 WTQSQQKLLELALQQYPKGASDRWDKIAKCVPSKSKEDCIARYKLLVELV 544
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 13 YLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYK 72
+LEN Q+ + +WT ++ Q ++ + TP RW K+A + G++V DV + K
Sbjct: 313 WLENRK-RTQKRQAPEWTEEDLSQLTRSMVKFPGGTPGRWDKIAHEL-GRSVTDVTTKAK 370
Query: 73 ELEEDVS 79
EL++ V+
Sbjct: 371 ELKDSVT 377
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Query: 134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKR- 192
V WT EE F GL KFG+ W I+ + +RT QV S+A++YF ++ +K
Sbjct: 115 SVKWTVEEKELFEQGLAKFGRR-WTKIA-TLLKSRTVLQVKSYARQYFKNKVKWDVEKET 172
Query: 193 --RSSIHDITTVNLDE--TATSSSENNKPPSPSPSAAVIQLQQQPKTVDMS---NEQFNW 245
+ S D+ N D+ A +++ P +A I+ + VD++ +E +
Sbjct: 173 PTQKSSSDLQVKNKDDRTKAWAAACLRGSADPCLNAVKIEKLSDDEDVDITDELDELTSQ 232
Query: 246 KSQNEGTAMLFNSMNGTAFMAPFCGISSYGP 276
SQN G+ + + N + + GP
Sbjct: 233 TSQNSGSHLTLDVPNSKMYTTNQGELCQEGP 263
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDV 67
S KWT +E + FE LA + + RW K+A ++ +TV V
Sbjct: 113 SHSVKWTVEEKELFEQGLAKFGR----RWTKIATLLKSRTVLQV 152
>sp|Q96KC8|DNJC1_HUMAN DnaJ homolog subfamily C member 1 OS=Homo sapiens GN=DNAJC1 PE=1
SV=1
Length = 554
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDV 78
WT + K E AL Y + + DRW K+A +P K+ D I +YK L E V
Sbjct: 497 WTQNQQKLLELALQQYPRGSSDRWDKIARCVPSKSKEDCIARYKLLVELV 546
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 13 YLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYK 72
+LEN N Q+ + +WT ++ Q ++ + TP RW K+A + G++V DV + K
Sbjct: 315 WLENRN-RTQKKQAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAK 372
Query: 73 ELEEDVS 79
+L++ V+
Sbjct: 373 QLKDSVT 379
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF-NRQLTGGKDKRR 193
+ WT EE F GL K+G+ W I++ + +RT QV S+A++YF N+ G ++
Sbjct: 120 LKWTSEEKELFEQGLVKYGRR-WTKIAK-LIGSRTVLQVKSYARQYFKNKAKNDGSEREE 177
Query: 194 SSIH 197
S H
Sbjct: 178 QSQH 181
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDV 67
S KWT +E + FE L Y + RW K+A +I +TV V
Sbjct: 117 SYSLKWTSEEKELFEQGLVKYGR----RWTKIAKLIGSRTVLQV 156
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 21/150 (14%)
Query: 100 WVDSNQG-YDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWR 158
W DS +G +K P +S+ P V WT+EE F GL FG+ W
Sbjct: 85 WSDSQEGEKQCIKRVRSPAK---ASSSP--------VKWTKEEKNLFEQGLATFGRR-WT 132
Query: 159 NISRNFVTTRTPTQVASHAQKYF-NRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKP 217
+I+R + +R+ QV ++A+ YF N+ G K + I + NL + ++P
Sbjct: 133 SIAR-LIGSRSVLQVKNYARHYFKNKCKLEGFVKEEAKIGSLQIPNLQDYENEPDITDEP 191
Query: 218 PS------PSPSAAVIQLQQQPKTVDMSNE 241
+ P+ +A I+ + +D+++E
Sbjct: 192 TTFRGRADPNLNAIKIEKLSDDEEIDITDE 221
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181
W EEE F GL +FG+ W I++ + TRT QV S+A++YF
Sbjct: 102 WAEEEKELFEKGLAQFGRR-WTKIAK-LIGTRTVLQVKSYAKQYF 144
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDV---IKQY 71
T+W +E + FE LA + + RW K+A +I +TV V KQY
Sbjct: 100 TRWAEEEKELFEKGLAQFGR----RWTKIAKLIGTRTVLQVKSYAKQY 143
>sp|P34454|YMA9_CAEEL Uncharacterized protein F54F2.9 OS=Caenorhabditis elegans
GN=F54F2.9 PE=4 SV=3
Length = 414
Score = 37.7 bits (86), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDV 78
W+ E K FE AL Y K T +RW +++ I KT V+ ++K+L E +
Sbjct: 357 WSQAEQKAFETALQKYPKGTDERWERISEEIGSKTKKQVMVRFKQLAEMI 406
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASH 176
WT E + L +++FG G+W +++ + +RTPT+V H
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPTEVMEH 109
>sp|Q4R3R9|MIER3_MACFA Mesoderm induction early response protein 3 OS=Macaca fascicularis
GN=MIER3 PE=2 SV=1
Length = 550
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVA--------SHAQKYFNRQLTGG 188
WTEEE R F L FGK D+ I +N V TRT + S YF +Q G
Sbjct: 282 WTEEECRSFEHALMLFGK-DFHLIQKNKVRTRTVAECVAFYYMWKKSERYDYFAQQTRFG 340
Query: 189 KDK--RRSSIHDITTVNLDE------TATSSSENNKPPSPSP 222
K + + D +DE T +S+ + P P P
Sbjct: 341 KKRYNHHPGVTDYMDRLVDETEALGGTVNASALTSNRPEPIP 382
>sp|Q8BXJ2|TREF1_MOUSE Transcriptional-regulating factor 1 OS=Mus musculus GN=Trerf1 PE=1
SV=1
Length = 1205
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQY 71
KWT E K F ALA Y KD +I V M+ KTV ++ Y
Sbjct: 895 KWTSLERKLFNKALATYSKD----FIFVQKMVKSKTVAQCVEYY 934
>sp|Q7Z3K6|MIER3_HUMAN Mesoderm induction early response protein 3 OS=Homo sapiens
GN=MIER3 PE=1 SV=2
Length = 550
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVA--------SHAQKYFNRQLTGG 188
WTEEE R F L FGK D+ I +N V TRT + S YF +Q G
Sbjct: 282 WTEEECRSFEHALMLFGK-DFHLIQKNKVRTRTVAECVAFYYMWKKSERYDYFAQQTRFG 340
Query: 189 KDK--RRSSIHDITTVNLDE------TATSSSENNKPPSPSP 222
K + + D +DE T +S+ + P P P
Sbjct: 341 KKRYNHHPGVTDYMDRLVDETEALGGTVNASALTSNRPEPIP 382
>sp|Q96PN7|TREF1_HUMAN Transcriptional-regulating factor 1 OS=Homo sapiens GN=TRERF1 PE=1
SV=1
Length = 1200
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQY 71
KWT E K F ALA Y KD +I V M+ KTV ++ Y
Sbjct: 889 KWTSLERKLFNKALATYSKD----FIFVQKMVKSKTVAQCVEYY 928
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 81 IEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEE 140
+++ L+P G D F + + N G +G++N GK+ RK + WTEE
Sbjct: 176 VQSHLVPTDGLDRDHF--DSITINGG-NGIQNMEKKQGKK---------PRKPRMTWTEE 223
Query: 141 EHRQFLMGLKKFG---KGDWRNISRNFVTTR----TPTQVASHAQKY 180
H++FL ++ G K + + + R T + VASH QK+
Sbjct: 224 LHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQKH 270
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana
GN=At1g72740 PE=2 SV=1
Length = 287
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRN 163
WT EE L G++K G G W+NI R+
Sbjct: 8 WTAEEEEALLAGIRKHGPGKWKNILRD 34
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASH 176
WT E + L +++FG G+W +++ + +RTP +V H
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEH 109
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASH 176
WT E + L +++FG G+W +++ + +RTP +V H
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEH 109
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRN 163
WT EE L G++K G G W+NI R+
Sbjct: 8 WTAEEEEALLAGVRKHGPGKWKNILRD 34
>sp|P10244|MYBB_HUMAN Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1
Length = 700
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 126 PSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQL 185
P ++ K V WT EE Q +++FG+ DW+ ++ +F RT Q + N L
Sbjct: 23 PEQRDSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLNPDL 81
Query: 186 TGG 188
G
Sbjct: 82 VKG 84
>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1
Length = 855
Score = 35.0 bits (79), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQL 185
P+T+EE ++ L KK+ +W IS T RTP Q+ N ++
Sbjct: 546 PFTKEEDKKLLTLAKKYDGHEWEKISIELGTNRTPLACIQRYQRSLNSKM 595
>sp|A7I458|GLMM_CAMHC Phosphoglucosamine mutase OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=glmM PE=3
SV=1
Length = 446
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 149 LKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR-----QLTGGKDKRRSSIHDITTVN 203
+K FG R + NF+T ++A A YF + + GKD RRS T +
Sbjct: 1 MKLFGTDGVRGKAGNFLTAELALRLAMAAGVYFRKNSLTNMILVGKDTRRSGYMIETAIV 60
Query: 204 LDETATSSSENNKPPSPSPSAAVI 227
T+ + P P+P+ A +
Sbjct: 61 AGLTSVGFNVRQIGPMPTPAVAFL 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,234,100
Number of Sequences: 539616
Number of extensions: 5800113
Number of successful extensions: 12334
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 12194
Number of HSP's gapped (non-prelim): 212
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)