Query 021756
Match_columns 308
No_of_seqs 240 out of 1366
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03212 Transcription repress 99.9 1.3E-21 2.9E-26 180.3 15.0 111 10-185 16-127 (249)
2 PLN03091 hypothetical protein; 99.9 2.6E-21 5.6E-26 190.1 14.9 113 9-186 4-117 (459)
3 KOG0048 Transcription factor, 99.8 2.3E-19 5E-24 165.6 10.8 103 26-186 9-112 (238)
4 KOG0724 Zuotin and related mol 99.6 2.6E-15 5.6E-20 144.1 6.9 196 12-207 12-242 (335)
5 TIGR01557 myb_SHAQKYF myb-like 99.5 9.2E-15 2E-19 107.8 5.7 52 133-184 2-57 (57)
6 KOG0049 Transcription factor, 99.5 1.3E-13 2.8E-18 140.6 11.1 100 20-176 354-453 (939)
7 PF00249 Myb_DNA-binding: Myb- 99.5 7.2E-14 1.6E-18 98.6 5.0 45 135-180 2-47 (48)
8 KOG0049 Transcription factor, 99.4 3.6E-13 7.8E-18 137.4 9.2 101 27-181 306-406 (939)
9 PF00249 Myb_DNA-binding: Myb- 99.2 1.6E-11 3.4E-16 86.6 5.1 46 27-75 2-48 (48)
10 PF13921 Myb_DNA-bind_6: Myb-l 99.2 5.7E-11 1.2E-15 86.9 7.6 42 29-74 1-42 (60)
11 smart00717 SANT SANT SWI3, AD 99.2 3.6E-11 7.9E-16 82.1 5.1 46 135-181 2-47 (49)
12 cd00167 SANT 'SWI3, ADA2, N-Co 99.1 8E-11 1.7E-15 79.3 5.2 44 136-180 1-44 (45)
13 PF13921 Myb_DNA-bind_6: Myb-l 99.0 4.2E-10 9.2E-15 82.2 3.8 42 137-180 1-42 (60)
14 smart00717 SANT SANT SWI3, AD 99.0 1.7E-09 3.6E-14 73.8 6.2 46 27-75 2-47 (49)
15 PLN03212 Transcription repress 98.9 2.4E-09 5.1E-14 99.6 6.6 49 133-182 24-73 (249)
16 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 7E-09 1.5E-13 69.7 5.9 44 28-74 1-44 (45)
17 KOG0051 RNA polymerase I termi 98.8 2E-08 4.3E-13 103.2 9.6 104 24-184 382-510 (607)
18 KOG0050 mRNA splicing protein 98.8 9.5E-09 2.1E-13 103.3 6.8 103 25-186 6-108 (617)
19 PLN03091 hypothetical protein; 98.7 1.5E-08 3.3E-13 100.6 5.0 49 133-182 13-62 (459)
20 COG5147 REB1 Myb superfamily p 98.6 6.5E-08 1.4E-12 98.4 7.1 106 23-186 17-122 (512)
21 KOG0048 Transcription factor, 98.6 3.2E-08 7E-13 91.6 3.8 47 135-182 10-57 (238)
22 PLN03142 Probable chromatin-re 98.4 2.9E-07 6.4E-12 100.6 6.7 131 27-183 825-986 (1033)
23 KOG0457 Histone acetyltransfer 98.4 2.8E-07 6.1E-12 91.4 5.0 48 136-184 74-121 (438)
24 COG5259 RSC8 RSC chromatin rem 97.8 2.4E-05 5.3E-10 78.4 4.3 42 135-178 280-321 (531)
25 KOG0457 Histone acetyltransfer 97.7 5.6E-05 1.2E-09 75.3 6.4 47 25-74 71-117 (438)
26 COG5114 Histone acetyltransfer 97.7 3.6E-05 7.7E-10 74.3 4.2 47 136-183 65-111 (432)
27 TIGR01557 myb_SHAQKYF myb-like 97.6 0.00019 4E-09 53.0 6.2 47 26-75 3-54 (57)
28 KOG1279 Chromatin remodeling f 97.5 0.00011 2.3E-09 75.2 4.9 42 134-177 253-294 (506)
29 COG5259 RSC8 RSC chromatin rem 97.3 0.0003 6.5E-09 70.8 4.9 46 25-74 278-323 (531)
30 KOG1279 Chromatin remodeling f 97.2 0.00063 1.4E-08 69.7 5.8 49 22-74 249-297 (506)
31 PF13325 MCRS_N: N-terminal re 96.8 0.018 3.9E-07 52.6 11.7 113 28-179 1-124 (199)
32 KOG0050 mRNA splicing protein 96.8 0.00099 2.1E-08 67.9 3.4 51 132-183 5-55 (617)
33 KOG4167 Predicted DNA-binding 96.8 0.0022 4.7E-08 67.7 5.8 44 25-72 618-661 (907)
34 KOG0051 RNA polymerase I termi 96.5 0.0076 1.6E-07 62.8 7.9 46 134-182 384-429 (607)
35 KOG4329 DNA-binding protein [G 96.5 0.0032 7E-08 62.0 4.9 49 135-187 278-326 (445)
36 COG5114 Histone acetyltransfer 96.5 0.004 8.7E-08 60.5 5.0 47 26-75 63-109 (432)
37 KOG1194 Predicted DNA-binding 96.4 0.044 9.6E-07 55.5 11.9 49 135-185 370-418 (534)
38 PF09111 SLIDE: SLIDE; InterP 96.3 0.0073 1.6E-07 50.8 5.2 49 134-182 49-111 (118)
39 PF13837 Myb_DNA-bind_4: Myb/S 96.1 0.0077 1.7E-07 46.6 4.2 54 27-80 2-69 (90)
40 COG5147 REB1 Myb superfamily p 95.9 0.014 3E-07 60.1 5.8 57 19-79 65-121 (512)
41 PF13837 Myb_DNA-bind_4: Myb/S 95.4 0.032 6.9E-07 43.1 5.1 51 136-186 3-69 (90)
42 COG5118 BDP1 Transcription ini 94.7 0.05 1.1E-06 54.1 5.1 67 4-74 341-409 (507)
43 PF13873 Myb_DNA-bind_5: Myb/S 94.5 0.051 1.1E-06 41.4 4.0 53 26-78 2-72 (78)
44 KOG4167 Predicted DNA-binding 94.4 0.13 2.8E-06 54.9 7.6 41 135-177 620-660 (907)
45 PF08914 Myb_DNA-bind_2: Rap1 94.0 0.061 1.3E-06 40.7 3.3 49 135-183 3-59 (65)
46 TIGR02894 DNA_bind_RsfA transc 93.5 0.088 1.9E-06 46.6 3.8 47 136-184 6-58 (161)
47 PLN03162 golden-2 like transcr 93.2 0.26 5.6E-06 49.1 7.0 55 130-184 233-290 (526)
48 KOG0385 Chromatin remodeling c 92.9 0.21 4.6E-06 53.8 6.2 137 26-180 795-955 (971)
49 PF09111 SLIDE: SLIDE; InterP 92.5 0.28 6.1E-06 41.3 5.4 53 24-76 47-111 (118)
50 KOG3554 Histone deacetylase co 91.5 0.2 4.2E-06 51.2 3.9 42 135-177 286-327 (693)
51 PF13873 Myb_DNA-bind_5: Myb/S 91.2 0.88 1.9E-05 34.5 6.4 49 136-184 4-72 (78)
52 COG5118 BDP1 Transcription ini 90.3 0.47 1E-05 47.4 5.2 45 131-177 362-406 (507)
53 PF12776 Myb_DNA-bind_3: Myb/S 89.7 0.74 1.6E-05 35.9 5.0 50 28-77 1-64 (96)
54 KOG4468 Polycomb-group transcr 89.5 0.48 1E-05 49.7 4.8 51 134-185 88-147 (782)
55 PF12776 Myb_DNA-bind_3: Myb/S 89.0 1.1 2.4E-05 34.9 5.5 45 136-180 1-61 (96)
56 KOG4329 DNA-binding protein [G 88.7 0.63 1.4E-05 46.3 4.7 47 24-74 275-322 (445)
57 PRK13923 putative spore coat p 88.5 0.52 1.1E-05 42.2 3.7 48 136-184 7-59 (170)
58 PRK13923 putative spore coat p 86.0 0.89 1.9E-05 40.7 3.7 49 25-74 4-55 (170)
59 KOG4282 Transcription factor G 84.9 1.6 3.4E-05 42.4 5.2 52 135-186 55-118 (345)
60 KOG1878 Nuclear receptor coreg 83.9 1.2 2.6E-05 50.9 4.2 42 143-186 363-404 (1672)
61 KOG2656 DNA methyltransferase 83.3 0.79 1.7E-05 45.9 2.4 46 27-76 131-182 (445)
62 TIGR02894 DNA_bind_RsfA transc 83.2 1.6 3.5E-05 38.8 4.0 50 25-75 3-55 (161)
63 KOG3841 TEF-1 and related tran 83.0 2 4.4E-05 43.0 5.0 54 132-186 74-147 (455)
64 PLN03142 Probable chromatin-re 81.3 2.2 4.7E-05 47.9 5.1 47 136-183 826-872 (1033)
65 PF08914 Myb_DNA-bind_2: Rap1 80.7 4.1 8.9E-05 30.8 4.9 49 27-75 3-57 (65)
66 KOG4468 Polycomb-group transcr 79.3 3.1 6.8E-05 43.9 5.1 50 25-78 87-146 (782)
67 KOG0724 Zuotin and related mol 79.1 0.57 1.2E-05 45.2 -0.2 49 136-186 55-103 (335)
68 KOG1194 Predicted DNA-binding 78.8 3.5 7.7E-05 42.2 5.2 40 136-177 189-228 (534)
69 smart00426 TEA TEA domain. 76.9 2 4.3E-05 33.1 2.2 19 136-154 5-23 (68)
70 PF11035 SnAPC_2_like: Small n 74.7 9.6 0.00021 37.5 6.7 53 24-77 19-72 (344)
71 PF13404 HTH_AsnC-type: AsnC-t 74.6 8.4 0.00018 26.5 4.7 38 33-74 4-41 (42)
72 KOG4282 Transcription factor G 72.4 5.5 0.00012 38.7 4.6 51 26-76 54-114 (345)
73 smart00595 MADF subfamily of S 69.3 4.9 0.00011 30.9 2.9 25 51-76 29-53 (89)
74 PF11626 Rap1_C: TRF2-interact 68.2 5.8 0.00013 31.2 3.1 16 23-38 44-59 (87)
75 KOG3554 Histone deacetylase co 67.4 5.8 0.00013 40.9 3.6 43 27-73 286-329 (693)
76 PF04504 DUF573: Protein of un 62.6 14 0.00031 29.8 4.5 44 136-180 6-61 (98)
77 PF06461 DUF1086: Domain of Un 61.0 27 0.00057 30.7 6.0 50 136-186 40-91 (145)
78 KOG2009 Transcription initiati 59.0 11 0.00024 39.8 3.9 48 22-73 405-452 (584)
79 COG1549 Queuine tRNA-ribosyltr 57.5 6.6 0.00014 40.7 2.0 61 3-75 287-347 (519)
80 PRK11179 DNA-binding transcrip 57.4 26 0.00056 30.0 5.4 41 32-76 9-49 (153)
81 PF11035 SnAPC_2_like: Small n 54.6 59 0.0013 32.2 7.8 52 132-184 19-73 (344)
82 KOG0384 Chromodomain-helicase 54.3 8 0.00017 44.1 2.1 29 133-161 1132-1160(1373)
83 PF08074 CHDCT2: CHDCT2 (NUC03 52.2 8 0.00017 34.6 1.4 26 136-161 5-30 (173)
84 PRK11169 leucine-responsive tr 50.6 32 0.0007 29.8 5.0 42 31-76 13-54 (164)
85 PF08281 Sigma70_r4_2: Sigma-7 50.2 47 0.001 22.9 5.0 39 140-181 13-51 (54)
86 PF09420 Nop16: Ribosome bioge 48.9 34 0.00075 29.9 4.9 48 132-180 112-162 (164)
87 PF04504 DUF573: Protein of un 48.1 35 0.00076 27.6 4.5 51 26-76 4-63 (98)
88 PF10545 MADF_DNA_bdg: Alcohol 45.9 21 0.00045 26.5 2.7 27 51-77 28-55 (85)
89 KOG3841 TEF-1 and related tran 44.2 41 0.00089 34.0 5.0 48 24-71 74-138 (455)
90 PF13404 HTH_AsnC-type: AsnC-t 44.1 42 0.00091 23.0 3.7 38 140-179 3-40 (42)
91 PF01285 TEA: TEA/ATTS domain 43.1 26 0.00055 35.8 3.6 45 135-180 50-112 (431)
92 PF05263 DUF722: Protein of un 42.2 56 0.0012 28.1 5.0 36 43-79 93-128 (130)
93 cd00086 homeodomain Homeodomai 39.6 1.2E+02 0.0027 20.7 6.2 47 25-72 3-49 (59)
94 KOG2009 Transcription initiati 38.3 34 0.00074 36.2 3.7 43 133-177 408-450 (584)
95 PF00046 Homeobox: Homeobox do 36.8 1E+02 0.0022 21.4 5.0 47 25-72 3-49 (57)
96 PRK11179 DNA-binding transcrip 36.6 62 0.0014 27.6 4.5 39 140-180 9-47 (153)
97 PF13325 MCRS_N: N-terminal re 35.2 96 0.0021 28.6 5.7 50 25-75 72-126 (199)
98 smart00426 TEA TEA domain. 34.2 73 0.0016 24.6 4.0 22 26-47 3-24 (68)
99 smart00389 HOX Homeodomain. DN 34.0 1.5E+02 0.0033 20.1 6.0 46 26-72 4-49 (56)
100 smart00344 HTH_ASNC helix_turn 33.3 1.2E+02 0.0025 23.9 5.3 41 32-76 3-43 (108)
101 PF07750 GcrA: GcrA cell cycle 32.3 63 0.0014 28.5 3.9 42 28-74 2-43 (162)
102 KOG2656 DNA methyltransferase 31.7 59 0.0013 33.0 4.0 50 135-185 131-185 (445)
103 PRK11169 leucine-responsive tr 31.6 73 0.0016 27.6 4.2 40 139-180 13-52 (164)
104 KOG0385 Chromatin remodeling c 29.5 78 0.0017 35.1 4.7 48 136-185 797-844 (971)
105 COG5269 ZUO1 Ribosome-associat 27.6 67 0.0015 31.4 3.5 49 26-74 245-299 (379)
106 PF01388 ARID: ARID/BRIGHT DNA 23.6 95 0.002 23.9 3.2 29 155-183 58-90 (92)
107 COG1522 Lrp Transcriptional re 22.7 2.1E+02 0.0046 23.7 5.4 41 32-76 8-48 (154)
108 PF01285 TEA: TEA/ATTS domain 22.5 97 0.0021 31.7 3.8 50 25-74 48-112 (431)
109 smart00501 BRIGHT BRIGHT, ARID 22.3 1.9E+02 0.0041 22.5 4.7 29 156-184 55-87 (93)
110 TIGR00695 uxuA mannonate dehyd 21.6 1.4E+02 0.003 30.4 4.5 50 25-79 36-93 (394)
111 PF02509 Rota_NS35: Rotavirus 20.8 45 0.00097 32.2 0.9 49 136-192 196-253 (316)
112 PRK03906 mannonate dehydratase 20.6 1.5E+02 0.0031 29.9 4.5 49 25-78 36-92 (385)
113 PRK09413 IS2 repressor TnpA; R 20.6 81 0.0017 26.0 2.3 26 33-61 93-118 (121)
No 1
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.87 E-value=1.3e-21 Score=180.34 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=95.0
Q ss_pred CCCccCCCCceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhC-CCCCHHHHHHHHHHhhhhhhhhccCCcCC
Q 021756 10 PASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMI-PGKTVGDVIKQYKELEEDVSDIEAGLIPI 88 (308)
Q Consensus 10 p~~~~~~~~~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~v-PGRT~~qc~~rY~~L~~Dv~~IEag~v~l 88 (308)
|||+. ...+++.||+|||++|.++|++|+.. +|..||..+ +|||.+||++||.+.+.
T Consensus 16 pcc~K-------~glKRg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~~g~gRT~KQCReRW~N~L~------------ 73 (249)
T PLN03212 16 PCCTK-------MGMKRGPWTVEEDEILVSFIKKEGEG---RWRSLPKRAGLLRCGKSCRLRWMNYLR------------ 73 (249)
T ss_pred CCccc-------CCCcCCCCCHHHHHHHHHHHHHhCcc---cHHHHHHhhhcCCCcchHHHHHHHhhc------------
Confidence 66665 23467889999999999999999865 499999988 59999999999998875
Q ss_pred CCCCCCCccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCC
Q 021756 89 PGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTR 168 (308)
Q Consensus 89 P~y~~~~f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tR 168 (308)
|.. +.++||+|||++||+++..||. +|..||+ +|++|
T Consensus 74 P~I-----------------------------------------~kgpWT~EED~lLlel~~~~Gn-KWs~IAk-~LpGR 110 (249)
T PLN03212 74 PSV-----------------------------------------KRGGITSDEEDLILRLHRLLGN-RWSLIAG-RIPGR 110 (249)
T ss_pred hhc-----------------------------------------ccCCCChHHHHHHHHHHHhccc-cHHHHHh-hcCCC
Confidence 321 1248999999999999999998 9999995 99999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 021756 169 TPTQVASHAQKYFNRQL 185 (308)
Q Consensus 169 T~~Q~~shaqky~~r~~ 185 (308)
|+.||++||..++++..
T Consensus 111 TDnqIKNRWns~LrK~l 127 (249)
T PLN03212 111 TDNEIKNYWNTHLRKKL 127 (249)
T ss_pred CHHHHHHHHHHHHhHHH
Confidence 99999999988776653
No 2
>PLN03091 hypothetical protein; Provisional
Probab=99.86 E-value=2.6e-21 Score=190.11 Aligned_cols=113 Identities=15% Similarity=0.327 Sum_probs=97.7
Q ss_pred cCCCccCCCCceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC-CCCHHHHHHHHHHhhhhhhhhccCCcC
Q 021756 9 SPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP-GKTVGDVIKQYKELEEDVSDIEAGLIP 87 (308)
Q Consensus 9 ~p~~~~~~~~~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP-GRT~~qc~~rY~~L~~Dv~~IEag~v~ 87 (308)
+||||. +..+++.||+|||++|.++|.+|+.. .|..||..++ |||.+||++||.+.++
T Consensus 4 ~~Cc~K-------qklrKg~WTpEEDe~L~~~V~kyG~~---nWs~IAk~~g~gRT~KQCRERW~NyLd----------- 62 (459)
T PLN03091 4 HSCCYK-------QKLRKGLWSPEEDEKLLRHITKYGHG---CWSSVPKQAGLQRCGKSCRLRWINYLR----------- 62 (459)
T ss_pred CccCcC-------CCCcCCCCCHHHHHHHHHHHHHhCcC---CHHHHhhhhccCcCcchHhHHHHhccC-----------
Confidence 488887 55678899999999999999999975 4999999885 9999999999998764
Q ss_pred CCCCCCCCccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCC
Q 021756 88 IPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTT 167 (308)
Q Consensus 88 lP~y~~~~f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~t 167 (308)
|.. +.++||.|||++||+.+++||. +|..|| .+|++
T Consensus 63 -P~I-----------------------------------------kKgpWT~EED~lLLeL~k~~Gn-KWskIA-k~LPG 98 (459)
T PLN03091 63 -PDL-----------------------------------------KRGTFSQQEENLIIELHAVLGN-RWSQIA-AQLPG 98 (459)
T ss_pred -Ccc-----------------------------------------cCCCCCHHHHHHHHHHHHHhCc-chHHHH-HhcCC
Confidence 211 1248999999999999999999 999999 59999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 021756 168 RTPTQVASHAQKYFNRQLT 186 (308)
Q Consensus 168 RT~~Q~~shaqky~~r~~s 186 (308)
||+.||++||...++|...
T Consensus 99 RTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 99 RTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999987777543
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.80 E-value=2.3e-19 Score=165.58 Aligned_cols=103 Identities=16% Similarity=0.247 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC-CCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccC
Q 021756 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP-GKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSN 104 (308)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP-GRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~ 104 (308)
++.||+|||.+|.+.|..|+.+. |..||..++ ||+.++||.||.+.+. |.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~---W~~i~k~~gl~R~GKSCRlRW~NyLr------------P~-------------- 59 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHN---GTALPKLAGLRRCGKSCRLRWTNYLR------------PD-------------- 59 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCC---cchhhhhcCCCccchHHHHHhhcccC------------CC--------------
Confidence 58999999999999999999884 999999999 9999999999987653 21
Q ss_pred CCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756 105 QGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ 184 (308)
Q Consensus 105 ~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~ 184 (308)
.|++.||+|||+++++++.+||. +|..||+ ++||||+++|++||.-.++|.
T Consensus 60 ---------------------------ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA~-~LPGRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 60 ---------------------------LKRGNFSDEEEDLIIKLHALLGN-RWSLIAG-RLPGRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred ---------------------------ccCCCCCHHHHHHHHHHHHHHCc-HHHHHHh-hCCCcCHHHHHHHHHHHHHHH
Confidence 12358999999999999999999 9999995 999999999999998877776
Q ss_pred hc
Q 021756 185 LT 186 (308)
Q Consensus 185 ~s 186 (308)
..
T Consensus 111 l~ 112 (238)
T KOG0048|consen 111 LL 112 (238)
T ss_pred HH
Confidence 54
No 4
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.6e-15 Score=144.10 Aligned_cols=196 Identities=42% Similarity=0.582 Sum_probs=152.8
Q ss_pred CccCCCCceecCCCC-----CCCCHHHHHHHHHHHHHcCCC----CChhHHHHHhhCCC-CCHHHHHHHHHHhhhhhhhh
Q 021756 12 SYLENSNWLFQESKG-----TKWTPQENKQFENALAVYDKD----TPDRWIKVAAMIPG-KTVGDVIKQYKELEEDVSDI 81 (308)
Q Consensus 12 ~~~~~~~~~~~~~~~-----~~WT~EEdk~Le~Ala~y~~~----t~dRW~~IAa~vPG-RT~~qc~~rY~~L~~Dv~~I 81 (308)
+|..+..|.+++... ..|+.++++.|++|+++|... ++++|.++++.||+ ++..+++.+|..+..+|..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~ 91 (335)
T KOG0724|consen 12 AYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIR 91 (335)
T ss_pred HHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhh
Confidence 456667788876553 669999999999999999965 78999999999999 99999999999999999999
Q ss_pred ccCCcCCCCCCCCC--------ccccccc--cCCCCCCCcccc-CC-CCCCCC--------CCCCCcccccCCCCCCHHH
Q 021756 82 EAGLIPIPGYGNDS--------FTLEWVD--SNQGYDGLKNFY-GP-GGKRGS--------STRPSDQERKKGVPWTEEE 141 (308)
Q Consensus 82 Eag~v~lP~y~~~~--------f~l~~~~--~~~~~dg~~~~~-~~-ggkR~~--------~~~~~~~erkKg~pWTeEE 141 (308)
+++.+++|.|.... +...|-. ....|....... .. +.+... .....+..++++.+|++.+
T Consensus 92 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (335)
T KOG0724|consen 92 ESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERE 171 (335)
T ss_pred hccCCCccccCccccccccccccCCccccccccccCCCCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHH
Confidence 99999999997632 1111211 011222211000 00 011100 0122355677889999999
Q ss_pred HHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHH-----HHHHHHhcCCCCCCCCCCCCCccccCCCC
Q 021756 142 HRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQ-----KYFNRQLTGGKDKRRSSIHDITTVNLDET 207 (308)
Q Consensus 142 ~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaq-----ky~~r~~s~~k~krr~Sihdit~~~~~~~ 207 (308)
+++++.++.++|+++|..|+++++..|++.|+.+|++ +|+.+..+..+.++|.|+||++.++.-..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 242 (335)
T KOG0724|consen 172 RKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSIEDITTASEAED 242 (335)
T ss_pred HHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchhhhhhccchhhh
Confidence 9999999999999999999999999999999999999 99999998889999999999998876555
No 5
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.54 E-value=9.2e-15 Score=107.76 Aligned_cols=52 Identities=44% Similarity=0.677 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCh---hhhhhhhcCCC-CHHHHHHHHHHHHHHH
Q 021756 133 KGVPWTEEEHRQFLMGLKKFGKGDW---RNISRNFVTTR-TPTQVASHAQKYFNRQ 184 (308)
Q Consensus 133 Kg~pWTeEE~~llL~gl~kyG~G~W---~~Iar~~V~tR-T~~Q~~shaqky~~r~ 184 (308)
++..||+|||.+||+||+.||.|+| +.|+..++.+| |..||++|+||||.++
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~ 57 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 3568999999999999999999999 99996666678 9999999999999863
No 6
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.49 E-value=1.3e-13 Score=140.58 Aligned_cols=100 Identities=26% Similarity=0.486 Sum_probs=87.3
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCcccc
Q 021756 20 LFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLE 99 (308)
Q Consensus 20 ~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~ 99 (308)
|++..+.+.||.+||.+|..||++|++.. |.+|-+.||||+..||++||.+.+. |
T Consensus 354 LdPsikhg~wt~~ED~~L~~AV~~Yg~kd---w~k~R~~vPnRSdsQcR~RY~nvL~-------------------~--- 408 (939)
T KOG0049|consen 354 LDPSVKHGRWTDQEDVLLVCAVSRYGAKD---WAKVRQAVPNRSDSQCRERYTNVLN-------------------R--- 408 (939)
T ss_pred cCccccCCCCCCHHHHHHHHHHHHhCccc---hhhHHHhcCCccHHHHHHHHHHHHH-------------------H---
Confidence 34677889999999999999999999875 9999999999999999999998874 0
Q ss_pred ccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHH
Q 021756 100 WVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASH 176 (308)
Q Consensus 100 ~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sh 176 (308)
+-|.+.||-.||..|+.+|++||.|.|.+|| .++|.||..|..++
T Consensus 409 -------------------------------s~K~~rW~l~edeqL~~~V~~YG~g~WakcA-~~Lp~~t~~q~~rr 453 (939)
T KOG0049|consen 409 -------------------------------SAKVERWTLVEDEQLLYAVKVYGKGNWAKCA-MLLPKKTSRQLRRR 453 (939)
T ss_pred -------------------------------hhccCceeecchHHHHHHHHHHccchHHHHH-HHccccchhHHHHH
Confidence 0112479999999999999999999999999 69999999775444
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.46 E-value=7.2e-14 Score=98.57 Aligned_cols=45 Identities=40% Similarity=0.746 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcC-CCCHHHHHHHHHHH
Q 021756 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVT-TRTPTQVASHAQKY 180 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~-tRT~~Q~~shaqky 180 (308)
.+||+|||.+|+++|.+||.++|..||. .|+ +||+.||++||++|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK-RMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHH-HHSSSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHH-HcCCCCCHHHHHHHHHhh
Confidence 4899999999999999999966999995 888 99999999999987
No 8
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.43 E-value=3.6e-13 Score=137.37 Aligned_cols=101 Identities=20% Similarity=0.499 Sum_probs=88.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccCCC
Q 021756 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQG 106 (308)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~~~ 106 (308)
.+||+|||.+|..+|...-.+....|.+|-.+||||+..|.|-||...++ |+.
T Consensus 306 keWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~Ld------------Psi--------------- 358 (939)
T KOG0049|consen 306 KEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLD------------PSV--------------- 358 (939)
T ss_pred hhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccC------------ccc---------------
Confidence 68999999999999999888888889999999999999999999976654 211
Q ss_pred CCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756 107 YDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181 (308)
Q Consensus 107 ~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~ 181 (308)
|.++||.+||.+|+.||.+||..+|.+|. ..||+|++.||+.+|.+.+
T Consensus 359 --------------------------khg~wt~~ED~~L~~AV~~Yg~kdw~k~R-~~vPnRSdsQcR~RY~nvL 406 (939)
T KOG0049|consen 359 --------------------------KHGRWTDQEDVLLVCAVSRYGAKDWAKVR-QAVPNRSDSQCRERYTNVL 406 (939)
T ss_pred --------------------------cCCCCCCHHHHHHHHHHHHhCccchhhHH-HhcCCccHHHHHHHHHHHH
Confidence 13589999999999999999988999997 6999999999999876543
No 9
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.22 E-value=1.6e-11 Score=86.57 Aligned_cols=46 Identities=33% Similarity=0.682 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC-CCCHHHHHHHHHHhh
Q 021756 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP-GKTVGDVIKQYKELE 75 (308)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP-GRT~~qc~~rY~~L~ 75 (308)
+.||.||+++|++||.+|+.+ +|..||..|| |||..||+.||..++
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 579999999999999999976 6999999999 999999999998863
No 10
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.20 E-value=5.7e-11 Score=86.85 Aligned_cols=42 Identities=19% Similarity=0.479 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74 (308)
Q Consensus 29 WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L 74 (308)
||.|||.+|..++..|+. .|..||.+||.||..+|+.||...
T Consensus 1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~~Rt~~~~~~r~~~~ 42 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN----DWKKIAEHLGNRTPKQCRNRWRNH 42 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-----HHHHHHHSTTS-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCc----CHHHHHHHHCcCCHHHHHHHHHHH
Confidence 999999999999999985 399999999669999999999983
No 11
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.18 E-value=3.6e-11 Score=82.08 Aligned_cols=46 Identities=30% Similarity=0.547 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~ 181 (308)
.+||+||+.+|+.++..||.++|..|| ..+++||+.+|+++|..++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia-~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIA-KELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 479999999999999999955999999 5899999999999997764
No 12
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.14 E-value=8e-11 Score=79.30 Aligned_cols=44 Identities=39% Similarity=0.752 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky 180 (308)
+||+||+++|+.++..||.++|..|| ..+++||..||+++|.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia-~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIA-KELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHH-hHcCCCCHHHHHHHHHHh
Confidence 59999999999999999955999999 589999999999999765
No 13
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.98 E-value=4.2e-10 Score=82.23 Aligned_cols=42 Identities=36% Similarity=0.707 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180 (308)
Q Consensus 137 WTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky 180 (308)
||+||+.+|+.++++||. +|..|| .+++.||+.||+.||.++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~~Rt~~~~~~r~~~~ 42 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIA-EHLGNRTPKQCRNRWRNH 42 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHH-HHSTTS-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHH-HHHCcCCHHHHHHHHHHH
Confidence 999999999999999997 999999 488889999999999763
No 14
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.97 E-value=1.7e-09 Score=73.77 Aligned_cols=46 Identities=26% Similarity=0.603 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhh
Q 021756 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELE 75 (308)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~ 75 (308)
..||+||+++|..+++.|+.. +|..||..||+||..||+.+|..+.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~---~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 579999999999999999942 3999999999999999999998864
No 15
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.90 E-value=2.4e-09 Score=99.57 Aligned_cols=49 Identities=29% Similarity=0.485 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhc-CCCCHHHHHHHHHHHHH
Q 021756 133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFV-TTRTPTQVASHAQKYFN 182 (308)
Q Consensus 133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V-~tRT~~Q~~shaqky~~ 182 (308)
++.+||+|||++|+.+|++||..+|..||+ .+ ++||+.||+.||.+|+.
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~~g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPK-RAGLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcccHHHHHH-hhhcCCCcchHHHHHHHhhc
Confidence 456999999999999999999889999996 55 69999999999998863
No 16
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.85 E-value=7e-09 Score=69.69 Aligned_cols=44 Identities=30% Similarity=0.671 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756 28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74 (308)
Q Consensus 28 ~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L 74 (308)
.||.||++.|..+++.|+.. +|..||..||+||..||+.+|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~---~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcC---CHHHHHhHcCCCCHHHHHHHHHHh
Confidence 49999999999999999953 499999999999999999999865
No 17
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.79 E-value=2e-08 Score=103.19 Aligned_cols=104 Identities=22% Similarity=0.467 Sum_probs=85.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCcccccccc
Q 021756 24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDS 103 (308)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~ 103 (308)
...+.||+||++.|...+..++.+ |..|+.+| ||.+.+|+.||..+.. +
T Consensus 382 ~~rg~wt~ee~eeL~~l~~~~g~~----W~~Ig~~l-gr~P~~crd~wr~~~~------------~-------------- 430 (607)
T KOG0051|consen 382 NKRGKWTPEEEEELKKLVVEHGND----WKEIGKAL-GRMPMDCRDRWRQYVK------------C-------------- 430 (607)
T ss_pred cccCCCCcchHHHHHHHHHHhccc----HHHHHHHH-ccCcHHHHHHHHHhhc------------c--------------
Confidence 378999999999999999999875 99999999 8999999999988653 0
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHh-------hh-------C-----CC------Chh
Q 021756 104 NQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLK-------KF-------G-----KG------DWR 158 (308)
Q Consensus 104 ~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~-------ky-------G-----~G------~W~ 158 (308)
|.+ .++.+||.||.+.||..|+ .| | .+ .|.
T Consensus 431 -------------g~~------------~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt 485 (607)
T KOG0051|consen 431 -------------GSK------------RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWT 485 (607)
T ss_pred -------------ccc------------cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchh
Confidence 001 1235899999999999995 33 1 11 699
Q ss_pred hhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756 159 NISRNFVTTRTPTQVASHAQKYFNRQ 184 (308)
Q Consensus 159 ~Iar~~V~tRT~~Q~~shaqky~~r~ 184 (308)
.|+ +.++||+..||+.+|.+...+-
T Consensus 486 ~vs-e~~~TR~~~qCr~Kw~kl~~~~ 510 (607)
T KOG0051|consen 486 LVS-EMLGTRSRIQCRYKWYKLTTSP 510 (607)
T ss_pred hhh-HhhcCCCcchHHHHHHHHHhhH
Confidence 999 5999999999999999886654
No 18
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=9.5e-09 Score=103.30 Aligned_cols=103 Identities=24% Similarity=0.489 Sum_probs=88.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccC
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSN 104 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~ 104 (308)
.++.|+.-||+.|..++.+||.+. |.+||+.++-+|.+||..||.+.++ |..
T Consensus 6 kggvwrntEdeilkaav~kyg~nq---ws~i~sll~~kt~rqC~~rw~e~ld------------p~i------------- 57 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYGKNQ---WSRIASLLNRKTARQCKARWEEWLD------------PAI------------- 57 (617)
T ss_pred ecceecccHHHHHHHHHHHcchHH---HHHHHHHHhhcchhHHHHHHHHHhC------------HHH-------------
Confidence 578899999999999999999874 9999999999999999999987654 211
Q ss_pred CCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756 105 QGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ 184 (308)
Q Consensus 105 ~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~ 184 (308)
+..-|+.|||..||.+.+.+.. .|..|+- +-+||..||-.||++..-..
T Consensus 58 ----------------------------~~tews~eederlLhlakl~p~-qwrtIa~--i~gr~~~qc~eRy~~ll~~~ 106 (617)
T KOG0050|consen 58 ----------------------------KKTEWSREEDERLLHLAKLEPT-QWRTIAD--IMGRTSQQCLERYNNLLDVY 106 (617)
T ss_pred ----------------------------hhhhhhhhHHHHHHHHHHhcCC-ccchHHH--HhhhhHHHHHHHHHHHHHHH
Confidence 1246999999999999999998 9999994 78999999999988765554
Q ss_pred hc
Q 021756 185 LT 186 (308)
Q Consensus 185 ~s 186 (308)
.+
T Consensus 107 ~s 108 (617)
T KOG0050|consen 107 VS 108 (617)
T ss_pred Hh
Confidence 43
No 19
>PLN03091 hypothetical protein; Provisional
Probab=98.69 E-value=1.5e-08 Score=100.65 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhc-CCCCHHHHHHHHHHHHH
Q 021756 133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFV-TTRTPTQVASHAQKYFN 182 (308)
Q Consensus 133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V-~tRT~~Q~~shaqky~~ 182 (308)
++++||+|||++|+.+|++||.++|..||+ .+ ++||+.||+.||.+|+.
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk-~~g~gRT~KQCRERW~NyLd 62 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWINYLR 62 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcCCHHHHhh-hhccCcCcchHhHHHHhccC
Confidence 345899999999999999999999999996 55 59999999999997743
No 20
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.62 E-value=6.5e-08 Score=98.36 Aligned_cols=106 Identities=22% Similarity=0.424 Sum_probs=90.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccc
Q 021756 23 ESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVD 102 (308)
Q Consensus 23 ~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~ 102 (308)
....+.|+..||..|..++..|+... |.+||+.+.-++..||..||.+.++ |.
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nn---ws~vas~~~~~~~kq~~~rw~~~ln------------p~------------ 69 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNN---WSKVASLLISSTGKQSSNRWNNHLN------------PQ------------ 69 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhccccc---HHHHHHHhcccccccccchhhhhhc------------hh------------
Confidence 45677999999999999998888654 9999999988999999999854332 11
Q ss_pred cCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 021756 103 SNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN 182 (308)
Q Consensus 103 ~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~ 182 (308)
.+...|++||++.++..-..+|. .|..|+ .++++||..||..+|.+.+.
T Consensus 70 -----------------------------lk~~~~~~eed~~li~l~~~~~~-~wstia-~~~d~rt~~~~~ery~~~~~ 118 (512)
T COG5147 70 -----------------------------LKKKNWSEEEDEQLIDLDKELGT-QWSTIA-DYKDRRTAQQCVERYVNTLE 118 (512)
T ss_pred -----------------------------cccccccHHHHHHHHHHHHhcCc-hhhhhc-cccCccchHHHHHHHHHHhh
Confidence 11247999999999999999999 899999 69999999999999998887
Q ss_pred HHhc
Q 021756 183 RQLT 186 (308)
Q Consensus 183 r~~s 186 (308)
...+
T Consensus 119 ~~~s 122 (512)
T COG5147 119 DLSS 122 (512)
T ss_pred hhhc
Confidence 7755
No 21
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.59 E-value=3.2e-08 Score=91.58 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHH
Q 021756 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVT-TRTPTQVASHAQKYFN 182 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~-tRT~~Q~~shaqky~~ 182 (308)
+|||.|||.+|...|++||.|+|..|++ ..+ +|+..+||.||-+|.+
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k-~~gl~R~GKSCRlRW~NyLr 57 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPK-LAGLRRCGKSCRLRWTNYLR 57 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhh-hcCCCccchHHHHHhhcccC
Confidence 6999999999999999999999999995 788 9999999999999843
No 22
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.43 E-value=2.9e-07 Score=100.57 Aligned_cols=131 Identities=28% Similarity=0.551 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHH-------HHHHhhhh----hhhhccCCcCCCCCCC--
Q 021756 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIK-------QYKELEED----VSDIEAGLIPIPGYGN-- 93 (308)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~-------rY~~L~~D----v~~IEag~v~lP~y~~-- 93 (308)
..||+.|-..|.+|+++||.+. ...||..|.|||..+|+. ||.++ .| +..||.|...+-....
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~---~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~-~~~~~~~~~ie~~e~~~~~~~~~~ 900 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRND---IKSIASEMEGKTEEEVERYAKVFWERYKEL-NDYDRIIKNIERGEARISRKDEIM 900 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhH---HHHHHHHhcCCCHHHHHHHHHHHHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999764 999999999999999954 44443 22 3567776533211100
Q ss_pred -------CCccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhh---
Q 021756 94 -------DSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRN--- 163 (308)
Q Consensus 94 -------~~f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~--- 163 (308)
+.+..+|....-.|. ..++..+|+|||+.||..+.+||-|+|..|...
T Consensus 901 ~~~~~k~~~~~~p~~~l~~~~~----------------------~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~ 958 (1033)
T PLN03142 901 KAIGKKLDRYKNPWLELKIQYG----------------------QNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRT 958 (1033)
T ss_pred HHHHHHHHHccCcHHHceeecC----------------------CCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 112223332111111 012347999999999999999999999999532
Q ss_pred --------hcCCCCHHHHHHHHHHHHHH
Q 021756 164 --------FVTTRTPTQVASHAQKYFNR 183 (308)
Q Consensus 164 --------~V~tRT~~Q~~shaqky~~r 183 (308)
|+.+||+.++..|+.-.+.-
T Consensus 959 ~~~f~fd~~~~srt~~~~~~r~~~l~~~ 986 (1033)
T PLN03142 959 SPLFRFDWFVKSRTPQELARRCDTLIRL 986 (1033)
T ss_pred CCceeeehhhccCCHHHHHHHHHHHHHH
Confidence 38899999999998754433
No 23
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.40 E-value=2.8e-07 Score=91.35 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ 184 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~ 184 (308)
.||.+|+-+||+|+.+||-|+|..|| ++|++||..+|+.||.|+|...
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA-~hIGtKtkeeck~hy~k~fv~s 121 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIA-DHIGTKTKEECKEHYLKHFVNS 121 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHH-HHHcccchHHHHHHHHHHHhcC
Confidence 69999999999999999999999999 6999999999999999999875
No 24
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.75 E-value=2.4e-05 Score=78.44 Aligned_cols=42 Identities=31% Similarity=0.619 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHH
Q 021756 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQ 178 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaq 178 (308)
.+||.+|-.+||+||+.||. +|.+||+ +|++||+.||.-|+-
T Consensus 280 k~WS~qE~~LLLEGIe~ygD-dW~kVA~-HVgtKt~EqCIl~FL 321 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGD-DWDKVAR-HVGTKTKEQCILHFL 321 (531)
T ss_pred ccccHHHHHHHHHHHHHhhh-hHHHHHH-HhCCCCHHHHHHHHH
Confidence 38999999999999999999 9999996 999999999999864
No 25
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.73 E-value=5.6e-05 Score=75.31 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L 74 (308)
-...||++|+-+|.+|+..||-|+ |..||.+|+.||..||++||.+.
T Consensus 71 ~~~~WtadEEilLLea~~t~G~GN---W~dIA~hIGtKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFGN---WQDIADHIGTKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCc---HHHHHHHHcccchHHHHHHHHHH
Confidence 346799999999999999999996 99999999999999999999775
No 26
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.69 E-value=3.6e-05 Score=74.29 Aligned_cols=47 Identities=23% Similarity=0.652 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r 183 (308)
.|+.+|+-+|++++...|-|+|..|| .+|+.|+..+|++||-|++..
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIa-dyiGsr~kee~k~HylK~y~e 111 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIA-DYIGSRAKEEIKSHYLKMYDE 111 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHH-HHHhhhhhHHHHHHHHHHHhh
Confidence 59999999999999999999999999 599999999999999998874
No 27
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.62 E-value=0.00019 Score=53.05 Aligned_cols=47 Identities=15% Similarity=0.342 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCChhH---HHHHhhCC-CC-CHHHHHHHHHHhh
Q 021756 26 GTKWTPQENKQFENALAVYDKDTPDRW---IKVAAMIP-GK-TVGDVIKQYKELE 75 (308)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW---~~IAa~vP-GR-T~~qc~~rY~~L~ 75 (308)
+-.||.||..+|..||..||.+. | ..|++.+. .+ |..||+.|+++..
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~---~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPD---WATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCc---ccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999854 9 99999875 35 9999999988753
No 28
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.50 E-value=0.00011 Score=75.22 Aligned_cols=42 Identities=26% Similarity=0.558 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756 134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA 177 (308)
Q Consensus 134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha 177 (308)
+..||++|.-+||+||.+||. +|.+|| .+|++||..||..|+
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~d-dW~kVa-~hVg~ks~eqCI~kF 294 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGD-DWNKVA-DHVGTKSQEQCILKF 294 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcc-cHHHHH-hccCCCCHHHHHHHH
Confidence 457999999999999999999 999999 599999999999984
No 29
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.28 E-value=0.0003 Score=70.82 Aligned_cols=46 Identities=28% Similarity=0.508 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L 74 (308)
....||++|.-+|..+|..|+.+ |.+||.+|+.||++||+-||-.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDd----W~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDD----WDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhh----HHHHHHHhCCCCHHHHHHHHHcC
Confidence 44589999999999999999976 99999999999999999999876
No 30
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.15 E-value=0.00063 Score=69.73 Aligned_cols=49 Identities=33% Similarity=0.524 Sum_probs=45.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756 22 QESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74 (308)
Q Consensus 22 ~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L 74 (308)
.++.+..||.+|.-+|..+|..|+.+ |.+||.+|.+||..||+-|+..|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~dd----W~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYGDD----WNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhccc----HHHHHhccCCCCHHHHHHHHHhc
Confidence 34567899999999999999999976 99999999999999999999876
No 31
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.84 E-value=0.018 Score=52.63 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC---CCCHHHHHHHHHHhhhh--hhhhccCCcCCCCCCCCCccccccc
Q 021756 28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIP---GKTVGDVIKQYKELEED--VSDIEAGLIPIPGYGNDSFTLEWVD 102 (308)
Q Consensus 28 ~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP---GRT~~qc~~rY~~L~~D--v~~IEag~v~lP~y~~~~f~l~~~~ 102 (308)
+|++++|-+|++||..-.. -+.|+.-|+ .-|..++.+||..|+-| ++.+-...
T Consensus 1 rW~~~DDl~Li~av~~~~~-----L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~----------------- 58 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTND-----LESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAA----------------- 58 (199)
T ss_pred CCCchhhHHHHHHHHHhcC-----HHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHH-----------------
Confidence 5999999999999986432 667777665 46999999999999865 22221110
Q ss_pred cCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCC--CChhhhhh----hhcCCCCHHHHHHH
Q 021756 103 SNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGK--GDWRNISR----NFVTTRTPTQVASH 176 (308)
Q Consensus 103 ~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~--G~W~~Iar----~~V~tRT~~Q~~sh 176 (308)
+...... .. .......+||.+|+++|......... ..+.+|=. -|-++||+.+...|
T Consensus 59 -m~~l~p~-------~~---------~~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~H 121 (199)
T PF13325_consen 59 -MRNLHPE-------LI---------AAIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDH 121 (199)
T ss_pred -HHhCCcc-------hh---------hcccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHH
Confidence 0000000 00 00112358999999999987665533 25666621 36789999999999
Q ss_pred HHH
Q 021756 177 AQK 179 (308)
Q Consensus 177 aqk 179 (308)
|+.
T Consensus 122 W~l 124 (199)
T PF13325_consen 122 WRL 124 (199)
T ss_pred HHH
Confidence 984
No 32
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.00099 Score=67.91 Aligned_cols=51 Identities=22% Similarity=0.525 Sum_probs=46.1
Q ss_pred cCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756 132 KKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183 (308)
Q Consensus 132 kKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r 183 (308)
+|++-|+..||..|-.++.+||+..|+.|+ ..+.-+|+.||+.+|.++..-
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~-sll~~kt~rqC~~rw~e~ldp 55 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIA-SLLNRKTARQCKARWEEWLDP 55 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHH-HHHhhcchhHHHHHHHHHhCH
Confidence 356789999999999999999998999999 699999999999999887543
No 33
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=96.75 E-value=0.0022 Score=67.71 Aligned_cols=44 Identities=43% Similarity=0.704 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYK 72 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~ 72 (308)
..-.||..|.++|.+||..|.++ +..|+.+|+|||+.||.+.|.
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~KD----F~~v~km~~~KtVaqCVeyYY 661 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSKD----FIFVQKMVKSKTVAQCVEYYY 661 (907)
T ss_pred CcccccHHHHHHHHHHHHHhccc----HHHHHHHhccccHHHHHHHHH
Confidence 45679999999999999999987 999999999999999999874
No 34
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.53 E-value=0.0076 Score=62.82 Aligned_cols=46 Identities=24% Similarity=0.520 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 021756 134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN 182 (308)
Q Consensus 134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~ 182 (308)
.+.||+||++.|-..+.++|. +|..|++ .-+|.|..|+.+|..|..
T Consensus 384 rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~--~lgr~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 384 RGKWTPEEEEELKKLVVEHGN-DWKEIGK--ALGRMPMDCRDRWRQYVK 429 (607)
T ss_pred cCCCCcchHHHHHHHHHHhcc-cHHHHHH--HHccCcHHHHHHHHHhhc
Confidence 357999999999999999998 9999995 679999999999987744
No 35
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=96.52 E-value=0.0032 Score=62.01 Aligned_cols=49 Identities=35% Similarity=0.568 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 021756 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTG 187 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~s~ 187 (308)
..||++|=+.|.+||+.||| ++..|.++-|+||+...|-.+ |+..+++.
T Consensus 278 ~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVey---YYlWKkSe 326 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVEY---YYLWKKSE 326 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHHH---HHHhhcCc
Confidence 46999999999999999999 999999999999999999987 45555543
No 36
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.45 E-value=0.004 Score=60.45 Aligned_cols=47 Identities=15% Similarity=0.347 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhh
Q 021756 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELE 75 (308)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~ 75 (308)
...|+.+|+-+|.+++...|.++ |+-||.+|+.|+.++|+.||.+..
T Consensus 63 ~e~WgadEEllli~~~~TlGlGN---W~dIadyiGsr~kee~k~HylK~y 109 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGN---WEDIADYIGSRAKEEIKSHYLKMY 109 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCc---HHHHHHHHhhhhhHHHHHHHHHHH
Confidence 35699999999999999999986 999999999999999999998764
No 37
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=96.37 E-value=0.044 Score=55.45 Aligned_cols=49 Identities=8% Similarity=-0.045 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021756 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQL 185 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~ 185 (308)
..||.+|.-+++.+|++||+ ...-|+ ..|+..+-.|+.+-...|-+|+.
T Consensus 370 ~~~~T~~~la~v~~I~~~~~-~~~pl~-wrik~t~cmee~e~l~~~~Rr~m 418 (534)
T KOG1194|consen 370 RCFDTPAALALIDNIKRKHH-MCVPLV-WRVKQTKCMEENEILNEEARRQM 418 (534)
T ss_pred cccCcHHHHHHHHHHHHhcc-Ccchhh-hHhcCcchhhHHHHHHHHHHHHH
Confidence 47999999999999999999 778888 57888999999999888877773
No 38
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=96.31 E-value=0.0073 Score=50.85 Aligned_cols=49 Identities=31% Similarity=0.624 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHhhhCC---CChhhhhhh-----------hcCCCCHHHHHHHHHHHHH
Q 021756 134 GVPWTEEEHRQFLMGLKKFGK---GDWRNISRN-----------FVTTRTPTQVASHAQKYFN 182 (308)
Q Consensus 134 g~pWTeEE~~llL~gl~kyG~---G~W~~Iar~-----------~V~tRT~~Q~~shaqky~~ 182 (308)
+..||+|||+.||..+.+||- |.|..|... |+.+||+..+..|+.-.+.
T Consensus 49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 347999999999999999998 899999742 3899999999999874443
No 39
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.14 E-value=0.0077 Score=46.63 Aligned_cols=54 Identities=19% Similarity=0.406 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHH------cC--CCC--ChhHHHHHhhCC----CCCHHHHHHHHHHhhhhhhh
Q 021756 27 TKWTPQENKQFENALAV------YD--KDT--PDRWIKVAAMIP----GKTVGDVIKQYKELEEDVSD 80 (308)
Q Consensus 27 ~~WT~EEdk~Le~Ala~------y~--~~t--~dRW~~IAa~vP----GRT~~qc~~rY~~L~~Dv~~ 80 (308)
..||.+|...|..++.. |+ ... ..-|..||..|. .||+.||+.+|..|..+-..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~ 69 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK 69 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999998877 21 111 236999999985 59999999999999875443
No 40
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=95.89 E-value=0.014 Score=60.10 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=47.8
Q ss_pred ceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhh
Q 021756 19 WLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVS 79 (308)
Q Consensus 19 ~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~ 79 (308)
++..--....|+.|||+.|..+-..++. +|..||.++||||..+|.++|.+++.+..
T Consensus 65 ~lnp~lk~~~~~~eed~~li~l~~~~~~----~wstia~~~d~rt~~~~~ery~~~~~~~~ 121 (512)
T COG5147 65 HLNPQLKKKNWSEEEDEQLIDLDKELGT----QWSTIADYKDRRTAQQCVERYVNTLEDLS 121 (512)
T ss_pred hhchhcccccccHHHHHHHHHHHHhcCc----hhhhhccccCccchHHHHHHHHHHhhhhh
Confidence 3444567789999999999987777765 49999999999999999999999887543
No 41
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.44 E-value=0.032 Score=43.14 Aligned_cols=51 Identities=24% Similarity=0.452 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhh------hCC-----C--Chhhhhhhh---cCCCCHHHHHHHHHHHHHHHhc
Q 021756 136 PWTEEEHRQFLMGLKK------FGK-----G--DWRNISRNF---VTTRTPTQVASHAQKYFNRQLT 186 (308)
Q Consensus 136 pWTeEE~~llL~gl~k------yG~-----G--~W~~Iar~~---V~tRT~~Q~~shaqky~~r~~s 186 (308)
.||.+|-..||..+.. ++. + -|..||..+ =..||+.||+.+|.....+...
T Consensus 3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~ 69 (90)
T PF13837_consen 3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK 69 (90)
T ss_dssp SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999887 321 1 499999533 1379999999999877666554
No 42
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=94.67 E-value=0.05 Score=54.08 Aligned_cols=67 Identities=15% Similarity=0.409 Sum_probs=51.6
Q ss_pred cccccc--CCCccCCCCceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756 4 GIEILS--PASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74 (308)
Q Consensus 4 ~~~~~~--p~~~~~~~~~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L 74 (308)
+||++- |.+-+-+|.-|-.....-.||.+|...|=+||.++|-+ +..|+.++|.|..+|++-.|.+-
T Consensus 341 e~E~veen~~ar~vts~t~g~~~~~~~Ws~~e~ekFYKALs~wGtd----F~LIs~lfP~R~RkqIKaKfi~E 409 (507)
T COG5118 341 EMEVVEENPFARIVTSSTFGKKKGALRWSKKEIEKFYKALSIWGTD----FSLISSLFPNRERKQIKAKFIKE 409 (507)
T ss_pred HHHHhhccchhheeecccccCCCCCCcccHHHHHHHHHHHHHhcch----HHHHHHhcCchhHHHHHHHHHHH
Confidence 456654 44423233333344566789999999999999999976 99999999999999999998753
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.54 E-value=0.051 Score=41.35 Aligned_cols=53 Identities=11% Similarity=0.296 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---C----------CChhHHHHHhhCC-----CCCHHHHHHHHHHhhhhh
Q 021756 26 GTKWTPQENKQFENALAVYDK---D----------TPDRWIKVAAMIP-----GKTVGDVIKQYKELEEDV 78 (308)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~---~----------t~dRW~~IAa~vP-----GRT~~qc~~rY~~L~~Dv 78 (308)
...||.+|...|...|..|.. + ...-|+.||+.|. .||..||++.|.++...+
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999998641 1 1345999999884 499999999999987654
No 44
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=94.38 E-value=0.13 Score=54.89 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA 177 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha 177 (308)
+-||..|-++|-.||-.|-+ |+..|+ +.|+++|..||-.+|
T Consensus 620 d~WTp~E~~lF~kA~y~~~K-DF~~v~-km~~~KtVaqCVeyY 660 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSK-DFIFVQ-KMVKSKTVAQCVEYY 660 (907)
T ss_pred ccccHHHHHHHHHHHHHhcc-cHHHHH-HHhccccHHHHHHHH
Confidence 46999999999999999999 999999 699999999999884
No 45
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=94.02 E-value=0.061 Score=40.74 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHhhh---C---CC--ChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756 135 VPWTEEEHRQFLMGLKKF---G---KG--DWRNISRNFVTTRTPTQVASHAQKYFNR 183 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~ky---G---~G--~W~~Iar~~V~tRT~~Q~~shaqky~~r 183 (308)
+++|+|||.+|+.-|+.+ | .| -|+.+++..+..+|-..-++||-|.+..
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 589999999999999765 3 23 4999997665578888889987665443
No 46
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.47 E-value=0.088 Score=46.63 Aligned_cols=47 Identities=21% Similarity=0.394 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHhhh---CCC---ChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756 136 PWTEEEHRQFLMGLKKF---GKG---DWRNISRNFVTTRTPTQVASHAQKYFNRQ 184 (308)
Q Consensus 136 pWTeEE~~llL~gl~ky---G~G---~W~~Iar~~V~tRT~~Q~~shaqky~~r~ 184 (308)
.||+|||.+|-+.|-+| |.- ....+++ --+||+..|.-||+.|.+++
T Consensus 6 AWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~--~L~RTsAACGFRWNs~VRkq 58 (161)
T TIGR02894 6 AWTHEEDLLLAETVLRHIREGSTQLSAFEEVGR--ALNRTAAACGFRWNAYVRKQ 58 (161)
T ss_pred ccccHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHcccHHHhcchHHHHHHHH
Confidence 79999999999998888 431 3555654 46999999999999998876
No 47
>PLN03162 golden-2 like transcription factor; Provisional
Probab=93.24 E-value=0.26 Score=49.07 Aligned_cols=55 Identities=33% Similarity=0.427 Sum_probs=42.6
Q ss_pred cccCCCCCCHHHHHHHHHHHhhhCCC--Chhhhhh-hhcCCCCHHHHHHHHHHHHHHH
Q 021756 130 ERKKGVPWTEEEHRQFLMGLKKFGKG--DWRNISR-NFVTTRTPTQVASHAQKYFNRQ 184 (308)
Q Consensus 130 erkKg~pWTeEE~~llL~gl~kyG~G--~W~~Iar-~~V~tRT~~Q~~shaqky~~r~ 184 (308)
.+|.+..||.|=|++|+++|.+.|-. .=+.|-+ .-|++=|-.+|+||.|||...+
T Consensus 233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~r 290 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHR 290 (526)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhc
Confidence 45567789999999999999999931 2444542 1178899999999999996554
No 48
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=92.89 E-value=0.21 Score=53.83 Aligned_cols=137 Identities=25% Similarity=0.327 Sum_probs=79.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHH-------HHHHhhhh---hhhhccCCcCCCCCCCCC
Q 021756 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIK-------QYKELEED---VSDIEAGLIPIPGYGNDS 95 (308)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~-------rY~~L~~D---v~~IEag~v~lP~y~~~~ 95 (308)
-..||+.|-..|.+|..+|+.++ -+.||+.+-| |+.||.. |+.+|.+- +..||.|...+..-..
T Consensus 795 ft~w~k~df~~fi~a~eKygr~d---i~~ia~~~e~-~~eev~~y~rvfwer~~el~d~ek~~~~ie~~e~~i~r~~~-- 868 (971)
T KOG0385|consen 795 FTNWTKRDFNQFIKANEKYGRDD---IENIAAEVEG-TPEEVGEYARVFWERLEELSDIEKIIYQIERGEKRIQRGDS-- 868 (971)
T ss_pred ccchhhhhHHHHHHHhhccCcch---hhhhHHhhcC-CHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHhhhhHHHH--
Confidence 35699999999999999999875 7899999988 9999943 22232211 2345655433211000
Q ss_pred ccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCC---hhhhhh----------
Q 021756 96 FTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGD---WRNISR---------- 162 (308)
Q Consensus 96 f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~---W~~Iar---------- 162 (308)
.....+. . .+.+ |....-+ .....-++.+.|++|++.|+.+|.++|-.. |..+..
T Consensus 869 ~~~~ld~-k--~~~~--------k~p~~l~-i~~~~nk~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frf 936 (971)
T KOG0385|consen 869 IKKALDD-K--IARY--------KAPHQLR-IQYGTNKGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRF 936 (971)
T ss_pred HHHHHhh-h--Hhhh--------cCchhee-eeeccccCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCccccc
Confidence 0000000 0 0000 0000000 000111567899999999999999999753 555531
Q ss_pred -hhcCCCCHHHHHHHHHHH
Q 021756 163 -NFVTTRTPTQVASHAQKY 180 (308)
Q Consensus 163 -~~V~tRT~~Q~~shaqky 180 (308)
-|+.+||...+..|+.-+
T Consensus 937 dw~~~sRt~~el~Rr~ntl 955 (971)
T KOG0385|consen 937 DWFIKSRTAMELQRRCNTL 955 (971)
T ss_pred ceeeehhhHHHHHhcCCee
Confidence 136778887777665543
No 49
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=92.48 E-value=0.28 Score=41.31 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC------------CCCHHHHHHHHHHhhh
Q 021756 24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP------------GKTVGDVIKQYKELEE 76 (308)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP------------GRT~~qc~~rY~~L~~ 76 (308)
..+..+|.|||.-|...+..||-++++.|++|-+.|- .||+.++.+|-.-|+.
T Consensus 47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 3568899999999999999999988889999988763 7999999999877754
No 50
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=91.53 E-value=0.2 Score=51.20 Aligned_cols=42 Identities=26% Similarity=0.543 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA 177 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha 177 (308)
..|+.-|-.+|.++|+|||+ ++..|..+|+|=++-+.|-.+|
T Consensus 286 EEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyY 327 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYY 327 (693)
T ss_pred hhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHH
Confidence 46999999999999999999 9999999999999999998875
No 51
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=91.16 E-value=0.88 Score=34.48 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHhhh-----CCC-----------Chhhhhhhh----cCCCCHHHHHHHHHHHHHHH
Q 021756 136 PWTEEEHRQFLMGLKKF-----GKG-----------DWRNISRNF----VTTRTPTQVASHAQKYFNRQ 184 (308)
Q Consensus 136 pWTeEE~~llL~gl~ky-----G~G-----------~W~~Iar~~----V~tRT~~Q~~shaqky~~r~ 184 (308)
.||.+|-..|+..|.+| |+. -|..|+..+ .+.||..|++..|.++-...
T Consensus 4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 69999999999999998 421 499998644 34799999999998875544
No 52
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=90.30 E-value=0.47 Score=47.37 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=40.5
Q ss_pred ccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756 131 RKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA 177 (308)
Q Consensus 131 rkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha 177 (308)
+++..+||.+|-.+|-.||..+|- ++..|| .++|+|.-.||+-.+
T Consensus 362 ~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs-~lfP~R~RkqIKaKf 406 (507)
T COG5118 362 KKGALRWSKKEIEKFYKALSIWGT-DFSLIS-SLFPNRERKQIKAKF 406 (507)
T ss_pred CCCCCcccHHHHHHHHHHHHHhcc-hHHHHH-HhcCchhHHHHHHHH
Confidence 444568999999999999999999 999999 699999999999854
No 53
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=89.73 E-value=0.74 Score=35.91 Aligned_cols=50 Identities=20% Similarity=0.407 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHc------C-CC--CChhHHHHHhhCC-----CCCHHHHHHHHHHhhhh
Q 021756 28 KWTPQENKQFENALAVY------D-KD--TPDRWIKVAAMIP-----GKTVGDVIKQYKELEED 77 (308)
Q Consensus 28 ~WT~EEdk~Le~Ala~y------~-~~--t~dRW~~IAa~vP-----GRT~~qc~~rY~~L~~D 77 (308)
.||.++++.|..++... + .+ .+.-|..|++.|. ..|..||..||..|..+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 59999999999877542 1 11 1456999999885 36899999999988765
No 54
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=89.52 E-value=0.48 Score=49.69 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCChhhhh---------hhhcCCCCHHHHHHHHHHHHHHHh
Q 021756 134 GVPWTEEEHRQFLMGLKKFGKGDWRNIS---------RNFVTTRTPTQVASHAQKYFNRQL 185 (308)
Q Consensus 134 g~pWTeEE~~llL~gl~kyG~G~W~~Ia---------r~~V~tRT~~Q~~shaqky~~r~~ 185 (308)
...||-.|..-|..||+.+|+ ++.+|- ..-+..+|.-||+-||.+..+++.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~ 147 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN 147 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 358999999999999999999 999992 123777899999998876666653
No 55
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=88.98 E-value=1.1 Score=34.89 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHhhh---C----CC-----Chhhhhhhh----cCCCCHHHHHHHHHHH
Q 021756 136 PWTEEEHRQFLMGLKKF---G----KG-----DWRNISRNF----VTTRTPTQVASHAQKY 180 (308)
Q Consensus 136 pWTeEE~~llL~gl~ky---G----~G-----~W~~Iar~~----V~tRT~~Q~~shaqky 180 (308)
.||+++++.||+.+... | .+ .|..|+..| -...|..||++|+..+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 39999999999998664 2 11 488888544 2346788999998643
No 56
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=88.72 E-value=0.63 Score=46.31 Aligned_cols=47 Identities=26% Similarity=0.571 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHH-HhhCCCCCHHHHHHHHHHh
Q 021756 24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKV-AAMIPGKTVGDVIKQYKEL 74 (308)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~I-Aa~vPGRT~~qc~~rY~~L 74 (308)
..-..|+.+|=+.|+..|..||++ +..| |..|+.|++.+|+..|..-
T Consensus 275 d~l~~wsEeEcr~FEegl~~yGKD----F~lIr~nkvrtRsvgElVeyYYlW 322 (445)
T KOG4329|consen 275 DDLSGWSEEECRNFEEGLELYGKD----FHLIRANKVRTRSVGELVEYYYLW 322 (445)
T ss_pred cccccCCHHHHHHHHHHHHHhccc----HHHHHhcccccchHHHHHHHHHHh
Confidence 344679999999999999999997 7666 5678999999999987543
No 57
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=88.51 E-value=0.52 Score=42.21 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCChhhhhhhh-----cCCCCHHHHHHHHHHHHHHH
Q 021756 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNF-----VTTRTPTQVASHAQKYFNRQ 184 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~-----V~tRT~~Q~~shaqky~~r~ 184 (308)
.||+|||.+|-+.|-.|++..=..++ .| .-.||..+|.-||+.+.+++
T Consensus 7 awt~e~d~llae~vl~~i~eg~tql~-afe~~g~~L~rt~aac~fRwNs~vrk~ 59 (170)
T PRK13923 7 AWTQERDGLLAEVVLRHIREGGTQLK-AFEEVGDALKRTAAACGFRWNSVVRKQ 59 (170)
T ss_pred hhhhHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHhhhHHHHHhHHHHHHHHH
Confidence 69999999998888888763333343 22 57899999999998777654
No 58
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=85.95 E-value=0.89 Score=40.75 Aligned_cols=49 Identities=8% Similarity=0.209 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCC---hhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTP---DRWIKVAAMIPGKTVGDVIKQYKEL 74 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~---dRW~~IAa~vPGRT~~qc~~rY~~L 74 (308)
+...||.|||.+|...|-.|..... +-.+.++..| +||...|-.||...
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~ 55 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSV 55 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHH
Confidence 4567999999999988888775432 3466777777 79999999999544
No 59
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=84.90 E-value=1.6 Score=42.45 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHhhh----CCC-----Chhhhhhhh---cCCCCHHHHHHHHHHHHHHHhc
Q 021756 135 VPWTEEEHRQFLMGLKKF----GKG-----DWRNISRNF---VTTRTPTQVASHAQKYFNRQLT 186 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~ky----G~G-----~W~~Iar~~---V~tRT~~Q~~shaqky~~r~~s 186 (308)
..|+.+|=+.||.+..+. ..| .|..||+++ ---||+.||+..|.+..++.+.
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999987664 333 499999744 3349999999999876666544
No 60
>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]
Probab=83.87 E-value=1.2 Score=50.93 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=35.2
Q ss_pred HHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021756 143 RQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLT 186 (308)
Q Consensus 143 ~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~s 186 (308)
+.--.||..+|+ +|..|+. .|.+.|..||.+.+-||-.|.+.
T Consensus 363 ev~k~Glveh~R-~~aai~p-~vvt~tes~c~na~a~~~~r~N~ 404 (1672)
T KOG1878|consen 363 EVAKSGLVEHGR-EWAAILP-KVVTKTESQCKNAYAKYKNRHNL 404 (1672)
T ss_pred hhhhccchhhhh-hHHHhcC-ccceecccchhhHHHhhhhhhcc
Confidence 355667888889 9999995 89999999999888888877754
No 61
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=83.32 E-value=0.79 Score=45.92 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhh-----CCC-CCHHHHHHHHHHhhh
Q 021756 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAM-----IPG-KTVGDVIKQYKELEE 76 (308)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~-----vPG-RT~~qc~~rY~~L~~ 76 (308)
..||.||..-|-++...|+. ||..||.. ++. ||++|.++||..+..
T Consensus 131 n~WskeETD~LF~lck~fDL----Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r 182 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL----RFFVIADRYDNQQYKKSRTVEDLKERYYSVCR 182 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe----eEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence 56999999999999999997 48888776 665 999999999987654
No 62
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=83.24 E-value=1.6 Score=38.80 Aligned_cols=50 Identities=10% Similarity=0.194 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCC---ChhHHHHHhhCCCCCHHHHHHHHHHhh
Q 021756 25 KGTKWTPQENKQFENALAVYDKDT---PDRWIKVAAMIPGKTVGDVIKQYKELE 75 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t---~dRW~~IAa~vPGRT~~qc~~rY~~L~ 75 (308)
+.-.||.|||.+|-..|-.|=... -.-++.|+..| +||..-|-=||...+
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~V 55 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYV 55 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHH
Confidence 445799999999988887764322 23478999998 799999977776654
No 63
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=83.02 E-value=2 Score=42.96 Aligned_cols=54 Identities=31% Similarity=0.477 Sum_probs=41.7
Q ss_pred cCCCCCCHHHHHHHHHHHhhh-------------C--CCChhhhhhhhc-----CCCCHHHHHHHHHHHHHHHhc
Q 021756 132 KKGVPWTEEEHRQFLMGLKKF-------------G--KGDWRNISRNFV-----TTRTPTQVASHAQKYFNRQLT 186 (308)
Q Consensus 132 kKg~pWTeEE~~llL~gl~ky-------------G--~G~W~~Iar~~V-----~tRT~~Q~~shaqky~~r~~s 186 (308)
...+-|+++=++.|++||..| | -|+=..||| ++ .|||..||.+|-|-.-+|..+
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIar-YIKlrtgktRTrKQVSSHIQVlarrk~r 147 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVLARRKLR 147 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 334579999999999999998 3 245677886 54 578899999999877666544
No 64
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=81.26 E-value=2.2 Score=47.86 Aligned_cols=47 Identities=21% Similarity=0.557 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r 183 (308)
.||.-+=..|+.|..+||+.+-..|| ..|.++|+.+|+.+++-|..|
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~-~~~~~k~~~ev~~y~~~f~~~ 872 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIA-SEMEGKTEEEVERYAKVFWER 872 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHH-HHhcCCCHHHHHHHHHHHHHh
Confidence 49999999999999999999999999 589999999999776544433
No 65
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=80.72 E-value=4.1 Score=30.81 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC-----CCChhHHHHHhhCC-CCCHHHHHHHHHHhh
Q 021756 27 TKWTPQENKQFENALAVYDK-----DTPDRWIKVAAMIP-GKTVGDVIKQYKELE 75 (308)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~-----~t~dRW~~IAa~vP-GRT~~qc~~rY~~L~ 75 (308)
...|.|||.+|.+-|+.+.. ....-|..+|+.-| ..|-.--++||.+-+
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L 57 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHL 57 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46899999999999976532 22456999999988 788888899997654
No 66
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=79.32 E-value=3.1 Score=43.92 Aligned_cols=50 Identities=34% Similarity=0.447 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCChhHHHH----------HhhCCCCCHHHHHHHHHHhhhhh
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKV----------AAMIPGKTVGDVIKQYKELEEDV 78 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~I----------Aa~vPGRT~~qc~~rY~~L~~Dv 78 (308)
.++.||..|...|-.||..+|++ +++| -..+--||..||+.+|.+++..+
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GKd----Fe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m 146 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGKD----FEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRM 146 (782)
T ss_pred cccccchhhHHHHHHHHHHhccc----HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHH
Confidence 35689999999999999999987 8888 33333589999999998876544
No 67
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=79.08 E-value=0.57 Score=45.16 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021756 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLT 186 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~s 186 (308)
.||++|+..|..+|..|+. .|..|- .++..++..+++.|+|+||-....
T Consensus 55 ~~t~~~~~~~~~~l~~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~p~~~~ 103 (335)
T KOG0724|consen 55 RRTPDSWDKFAEALPLEKR-LEDKIE-EYIGLVFDVNIRESGQKPFPKYGK 103 (335)
T ss_pred ccchhhhhHHHhcCccccc-cchhHH-hhhhhHHHHhhhhccCCCccccCc
Confidence 4999999999999999965 999998 599999999999999999887743
No 68
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=78.77 E-value=3.5 Score=42.19 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA 177 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha 177 (308)
.||.||--+|..++..||+ +..+|- ..+|.|+-..+.-+|
T Consensus 189 ~WT~Ed~vlFe~aF~~~GK-~F~kIr-q~LP~rsLaSlvqyY 228 (534)
T KOG1194|consen 189 EWTAEDIVLFEQAFQFFGK-DFHKIR-QALPHRSLASLVQYY 228 (534)
T ss_pred cchHHHHHHHHHHHHHhcc-cHHHHH-HHccCccHHHHHHHH
Confidence 6999999999999999999 999998 699999999887765
No 69
>smart00426 TEA TEA domain.
Probab=76.94 E-value=2 Score=33.07 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHhhhCC
Q 021756 136 PWTEEEHRQFLMGLKKFGK 154 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~ 154 (308)
-|.++=+..|++||..|.+
T Consensus 5 vWp~~lE~Af~~aL~~~~~ 23 (68)
T smart00426 5 VWSPDIEQAFQEALAIYPP 23 (68)
T ss_pred cCcHHHHHHHHHHHHHcCc
Confidence 5999999999999999975
No 70
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=74.66 E-value=9.6 Score=37.48 Aligned_cols=53 Identities=19% Similarity=0.419 Sum_probs=40.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCCChhHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 021756 24 SKGTKWTPQENKQFENALAVYD-KDTPDRWIKVAAMIPGKTVGDVIKQYKELEED 77 (308)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~-~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~D 77 (308)
.....||..|.+.|.++|..-. ...+| -..|+..|+||+..|+++.-..|..-
T Consensus 19 ~gp~~Ws~rEkr~Llr~Lqar~g~~epd-~ael~~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 19 TGPAAWSAREKRQLLRLLQARRGQPEPD-AAELAKELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred CCcccCcHHHHHHHHHHHHHhcCCCCcC-HHHHHhhccCcCHHHHHHHHHHHHHH
Confidence 3467899999999999998643 23344 56799999999999997765555433
No 71
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=74.65 E-value=8.4 Score=26.46 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756 33 ENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74 (308)
Q Consensus 33 Edk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L 74 (308)
=|.++..+|..-+.-. |..||+.+ |-|...|.+|.+.|
T Consensus 4 ~D~~Il~~Lq~d~r~s---~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRS---YAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH-TTS----HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcc---HHHHHHHH-CcCHHHHHHHHHHh
Confidence 4677777777765543 99999999 89999999998876
No 72
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=72.38 E-value=5.5 Score=38.66 Aligned_cols=51 Identities=14% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CC--CChhHHHHHhhCC----CCCHHHHHHHHHHhhh
Q 021756 26 GTKWTPQENKQFENALAVYD----KD--TPDRWIKVAAMIP----GKTVGDVIKQYKELEE 76 (308)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~----~~--t~dRW~~IAa~vP----GRT~~qc~~rY~~L~~ 76 (308)
...|+.+|-..|+.+-.... .+ .-.-|+.||..+. -||..||+.+|.+|..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k 114 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKK 114 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 37899999999988766421 11 1334999999553 3999999999887753
No 73
>smart00595 MADF subfamily of SANT domain.
Probab=69.33 E-value=4.9 Score=30.88 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=21.9
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756 51 RWIKVAAMIPGKTVGDVIKQYKELEE 76 (308)
Q Consensus 51 RW~~IAa~vPGRT~~qc~~rY~~L~~ 76 (308)
-|..||..| |.|+.+|+.+|+.|..
T Consensus 29 aW~~Ia~~l-~~~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEEL-GLSVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 499999999 4599999999998864
No 74
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=68.16 E-value=5.8 Score=31.25 Aligned_cols=16 Identities=19% Similarity=0.644 Sum_probs=9.7
Q ss_pred CCCCCCCCHHHHHHHH
Q 021756 23 ESKGTKWTPQENKQFE 38 (308)
Q Consensus 23 ~~~~~~WT~EEdk~Le 38 (308)
....+.||+|||+.|.
T Consensus 44 ~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 44 DNMPGIWTPEDDEMLR 59 (87)
T ss_dssp TT-TT---HHHHHHHT
T ss_pred CCCCCCcCHHHHHHHH
Confidence 3456889999999994
No 75
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=67.40 E-value=5.8 Score=40.92 Aligned_cols=43 Identities=28% Similarity=0.613 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCChhHHHH-HhhCCCCCHHHHHHHHHH
Q 021756 27 TKWTPQENKQFENALAVYDKDTPDRWIKV-AAMIPGKTVGDVIKQYKE 73 (308)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~I-Aa~vPGRT~~qc~~rY~~ 73 (308)
.+|+..|--+||.||.+||++ +..| +.++|=|+..++++.|.-
T Consensus 286 EEWSasEanLFEeALeKyGKD----FndIrqdfLPWKSl~sIveyYYm 329 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGKD----FNDIRQDFLPWKSLTSIVEYYYM 329 (693)
T ss_pred hhccchhhHHHHHHHHHhccc----HHHHHHhhcchHHHHHHHHHHHH
Confidence 479999999999999999997 6555 456688999999887743
No 76
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=62.59 E-value=14 Score=29.84 Aligned_cols=44 Identities=30% Similarity=0.549 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhhh----CCC---ChhhhhhhhcCCC-----CHHHHHHHHHHH
Q 021756 136 PWTEEEHRQFLMGLKKF----GKG---DWRNISRNFVTTR-----TPTQVASHAQKY 180 (308)
Q Consensus 136 pWTeEE~~llL~gl~ky----G~G---~W~~Iar~~V~tR-----T~~Q~~shaqky 180 (308)
-||+|++-.||+||..| |.. +|...- ++|... |..|+...-...
T Consensus 6 ~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~-~~vk~~l~~~~s~~Ql~~KirrL 61 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFY-DFVKGSLSFDVSKNQLYDKIRRL 61 (98)
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCccHHHHH-HHHHHHccCCCCHHHHHHHHHHH
Confidence 59999999999999998 642 566555 344333 667776654433
No 77
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=61.03 E-value=27 Score=30.69 Aligned_cols=50 Identities=12% Similarity=0.406 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHhhhCCC--ChhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021756 136 PWTEEEHRQFLMGLKKFGKG--DWRNISRNFVTTRTPTQVASHAQKYFNRQLT 186 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~G--~W~~Iar~~V~tRT~~Q~~shaqky~~r~~s 186 (308)
-++..+-+.||.+|..||-| +|+-+-+ .+..+|..+++.+..-|++++.-
T Consensus 40 GFn~rQR~~Fln~vMR~G~~~f~~~w~~~-~Lr~Ks~~ei~aY~~LFm~HL~E 91 (145)
T PF06461_consen 40 GFNPRQRKAFLNAVMRYGMGAFDWKWFVP-RLRGKSEKEIRAYGSLFMRHLCE 91 (145)
T ss_pred ccCHHHHHHHHHHHHHHCcCcccchHHhh-hhccccHHHHHHHHHHHHHHhcC
Confidence 48999999999999999988 7888885 79999999999998766666543
No 78
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=58.96 E-value=11 Score=39.81 Aligned_cols=48 Identities=19% Similarity=0.410 Sum_probs=42.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 021756 22 QESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKE 73 (308)
Q Consensus 22 ~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~ 73 (308)
.......||.+|-.+|.+++..++.+ ...|++.+|+|+.+|++..|+.
T Consensus 405 k~~~~~~w~~se~e~fyka~~~~gs~----~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 405 KKLETDKWDASETELFYKALSERGSD----FSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred CccccCcccchhhHHhhhHHhhhccc----ccccccccccccHHHHHHHHhh
Confidence 44566789999999999999999976 7899999999999999998864
No 79
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=57.49 E-value=6.6 Score=40.69 Aligned_cols=61 Identities=25% Similarity=0.381 Sum_probs=42.5
Q ss_pred CccccccCCCccCCCCceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhh
Q 021756 3 RGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELE 75 (308)
Q Consensus 3 ~~~~~~~p~~~~~~~~~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~ 75 (308)
|+.|.+||+.+. --...+.|++||.+.....|+.|=+.+ ....|=+++|| .+..++..+.+
T Consensus 287 RELE~tYPa~~Y-------Di~VtG~WseEE~~~v~~~l~~yl~k~--~~~~vIAhv~g---r~~~E~~~e~v 347 (519)
T COG1549 287 RELEETYPAAHY-------DIPVTGHWSEEEKEFVAELLKSYLEKT--DYRKVIAHVPG---REAVERVLEAV 347 (519)
T ss_pred HHHHhhCccccc-------CccccccccHHHHHHHHHHHHHHhhhc--CCceEEEEcCc---hhHHHHHhhcc
Confidence 678889998632 123567999999999888999887655 35567778999 44444444443
No 80
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=57.40 E-value=26 Score=29.99 Aligned_cols=41 Identities=12% Similarity=0.270 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756 32 QENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE 76 (308)
Q Consensus 32 EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~ 76 (308)
+-|.++..+|+.-+.-. |..||+.+ |-|...|..|+++|.+
T Consensus 9 ~~D~~Il~~Lq~d~R~s---~~eiA~~l-glS~~tV~~Ri~rL~~ 49 (153)
T PRK11179 9 NLDRGILEALMENARTP---YAELAKQF-GVSPGTIHVRVEKMKQ 49 (153)
T ss_pred HHHHHHHHHHHHcCCCC---HHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 46778888888766554 99999999 8999999999999975
No 81
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=54.64 E-value=59 Score=32.16 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=39.4
Q ss_pred cCCCCCCHHHHHHHHHHHhhh-CC--CChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756 132 KKGVPWTEEEHRQFLMGLKKF-GK--GDWRNISRNFVTTRTPTQVASHAQKYFNRQ 184 (308)
Q Consensus 132 kKg~pWTeEE~~llL~gl~ky-G~--G~W~~Iar~~V~tRT~~Q~~shaqky~~r~ 184 (308)
.....||.-|-+.||.+|+.- |. -+-..|++ .+++|+..+|++.-|.+-.|.
T Consensus 19 ~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~-~l~~Rs~aEI~~fl~~LK~rv 73 (344)
T PF11035_consen 19 TGPAAWSAREKRQLLRLLQARRGQPEPDAAELAK-ELPGRSEAEIRDFLQQLKGRV 73 (344)
T ss_pred CCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHh-hccCcCHHHHHHHHHHHHHHH
Confidence 334689999999999999865 32 15667885 899999999998776554443
No 82
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=54.33 E-value=8 Score=44.07 Aligned_cols=29 Identities=31% Similarity=0.714 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCChhhhh
Q 021756 133 KGVPWTEEEHRQFLMGLKKFGKGDWRNIS 161 (308)
Q Consensus 133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Ia 161 (308)
...-|..++|..||.||-+||-|+|..|.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir 1160 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIR 1160 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhc
Confidence 45679999999999999999999999995
No 83
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.21 E-value=8 Score=34.64 Aligned_cols=26 Identities=31% Similarity=0.736 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCChhhhh
Q 021756 136 PWTEEEHRQFLMGLKKFGKGDWRNIS 161 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~G~W~~Ia 161 (308)
-|-..-|-.||.|+.+||-|+|..|.
T Consensus 5 iw~r~hdywll~gi~~hgy~rwqdi~ 30 (173)
T PF08074_consen 5 IWHRRHDYWLLAGIVKHGYGRWQDIQ 30 (173)
T ss_pred hhhhhhhHHHHhHHhhccchhHHHHh
Confidence 58888999999999999999999997
No 84
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=50.65 E-value=32 Score=29.81 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756 31 PQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE 76 (308)
Q Consensus 31 ~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~ 76 (308)
.+-|.++..+|+.-+.-+ |..||+.+ |-|..-|.+|+++|++
T Consensus 13 D~~D~~IL~~Lq~d~R~s---~~eiA~~l-glS~~tv~~Ri~rL~~ 54 (164)
T PRK11169 13 DRIDRNILNELQKDGRIS---NVELSKRV-GLSPTPCLERVRRLER 54 (164)
T ss_pred HHHHHHHHHHhccCCCCC---HHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 345666666776655544 99999999 8999999999999975
No 85
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=50.24 E-value=47 Score=22.91 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756 140 EEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181 (308)
Q Consensus 140 EE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~ 181 (308)
++++.++...-..|. .|..||+ .-+.|+..|+.+.++-.
T Consensus 13 ~~~r~i~~l~~~~g~-s~~eIa~--~l~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 13 ERQREIFLLRYFQGM-SYAEIAE--ILGISESTVKRRLRRAR 51 (54)
T ss_dssp HHHHHHHHHHHTS----HHHHHH--HCTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CHHHHHH--HHCcCHHHHHHHHHHHH
Confidence 455666666666787 9999995 56899999999866543
No 86
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=48.90 E-value=34 Score=29.93 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=39.0
Q ss_pred cCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhc---CCCCHHHHHHHHHHH
Q 021756 132 KKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFV---TTRTPTQVASHAQKY 180 (308)
Q Consensus 132 kKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V---~tRT~~Q~~shaqky 180 (308)
++..+=|+.|...+..+|.+||. |+..++++.= -=.|+.||+....+|
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 34457899999999999999998 9999997442 127999999887766
No 87
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=48.14 E-value=35 Score=27.61 Aligned_cols=51 Identities=8% Similarity=0.214 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCC----CCChhHHHHHhhCCC-----CCHHHHHHHHHHhhh
Q 021756 26 GTKWTPQENKQFENALAVYDK----DTPDRWIKVAAMIPG-----KTVGDVIKQYKELEE 76 (308)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~----~t~dRW~~IAa~vPG-----RT~~qc~~rY~~L~~ 76 (308)
.+.||.||+-.|.++|..|-. .....|..+...|-+ -|..|+.+....|..
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~ 63 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKK 63 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 467999999999999998832 222346554444432 477788666666543
No 88
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=45.95 E-value=21 Score=26.45 Aligned_cols=27 Identities=26% Similarity=0.494 Sum_probs=22.7
Q ss_pred hHHHHHhhCCC-CCHHHHHHHHHHhhhh
Q 021756 51 RWIKVAAMIPG-KTVGDVIKQYKELEED 77 (308)
Q Consensus 51 RW~~IAa~vPG-RT~~qc~~rY~~L~~D 77 (308)
-|..||..++. -++.+|+.+|..|...
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~ 55 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLRDR 55 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 39999999964 6899999999988653
No 89
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=44.16 E-value=41 Score=34.02 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=38.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCC------------ChhHHHHHhhCC-----CCCHHHHHHHH
Q 021756 24 SKGTKWTPQENKQFENALAVYDKDT------------PDRWIKVAAMIP-----GKTVGDVIKQY 71 (308)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~t------------~dRW~~IAa~vP-----GRT~~qc~~rY 71 (308)
...+.|+++=++.|..||++|+.+. -.|=+.||.+|. .||.+||-.|-
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHI 138 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHI 138 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 4557899999999999999998542 346799999996 48899995554
No 90
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=44.09 E-value=42 Score=22.95 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHH
Q 021756 140 EEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQK 179 (308)
Q Consensus 140 EE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqk 179 (308)
+=|+.+|..|+.-|+-.|..||+ .-|=|+..|..+.++
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~--~lglS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAE--ELGLSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHH--HHTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHH--HHCcCHHHHHHHHHH
Confidence 45789999999999988999995 467788899988765
No 91
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=43.06 E-value=26 Score=35.82 Aligned_cols=45 Identities=29% Similarity=0.316 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhhhCCC-------------Chhhhhhhh-----cCCCCHHHHHHHHHHH
Q 021756 135 VPWTEEEHRQFLMGLKKFGKG-------------DWRNISRNF-----VTTRTPTQVASHAQKY 180 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~kyG~G-------------~W~~Iar~~-----V~tRT~~Q~~shaqky 180 (308)
.-|+++=+..|++||..|.+- +=..|++ | =..||..||.+|-|-.
T Consensus 50 ~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~-yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 50 GVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISD-YIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp --S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHH-HHHHHHS----SHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHH-HHHHHhCcccchhHHHHHHHHH
Confidence 469999999999999999432 2234553 3 3469999999999866
No 92
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=42.21 E-value=56 Score=28.05 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=27.1
Q ss_pred HcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhh
Q 021756 43 VYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVS 79 (308)
Q Consensus 43 ~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~ 79 (308)
.|+.....-|..||..+ ..+..+|+..+..+.++|.
T Consensus 93 ry~~r~~~TW~~IA~~l-~i~erta~r~~~~fK~~i~ 128 (130)
T PF05263_consen 93 RYDRRSRRTWYQIAQKL-HISERTARRWRDRFKNDIY 128 (130)
T ss_pred HHcccccchHHHHHHHh-CccHHHHHHHHHHHHHHhc
Confidence 45544333499999999 5999999998888877653
No 93
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=39.64 E-value=1.2e+02 Score=20.70 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYK 72 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~ 72 (308)
....+|.+....|+......+.-+...-..||+.+ |-+..+|..=|.
T Consensus 3 ~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~-~l~~~qV~~WF~ 49 (59)
T cd00086 3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKEL-GLTERQVKIWFQ 49 (59)
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 34679999999999999986655556678999988 799999866443
No 94
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=38.29 E-value=34 Score=36.24 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756 133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA 177 (308)
Q Consensus 133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha 177 (308)
...+||.+|=.+|-.++...|. +...|+ +.+++|+..||+-.+
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs-~~slis-~l~p~R~rk~iK~K~ 450 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGS-DFSLIS-NLFPLRDRKQIKAKF 450 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcc-cccccc-cccccccHHHHHHHH
Confidence 4568999999999999999999 999999 699999999999843
No 95
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=36.84 E-value=1e+02 Score=21.41 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYK 72 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~ 72 (308)
....+|.++.+.|+......+.-+...-+.||..+ |-+..+|..=|.
T Consensus 3 ~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l-~l~~~~V~~WF~ 49 (57)
T PF00046_consen 3 KRTRFTKEQLKVLEEYFQENPYPSKEEREELAKEL-GLTERQVKNWFQ 49 (57)
T ss_dssp SSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHH-TSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhccccccccccccccc-cccccccccCHH
Confidence 34678999999999998886555566789999998 899999865443
No 96
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=36.58 E-value=62 Score=27.61 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756 140 EEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180 (308)
Q Consensus 140 EE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky 180 (308)
+-|+.+|..|++=|+-.|..||+ .-+-|+..|+.|.++.
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~--~lglS~~tV~~Ri~rL 47 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAK--QFGVSPGTIHVRVEKM 47 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHH--HHCcCHHHHHHHHHHH
Confidence 57899999999999989999996 4688999999987654
No 97
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=35.21 E-value=96 Score=28.59 Aligned_cols=50 Identities=6% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhC-----CCCCHHHHHHHHHHhh
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMI-----PGKTVGDVIKQYKELE 75 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~v-----PGRT~~qc~~rY~~L~ 75 (308)
.+..||.+|+.+|.+....... +...+.+|=..= ++||+++...||..+.
T Consensus 72 ~kalfS~~EE~lL~~v~s~~~p-~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmk 126 (199)
T PF13325_consen 72 SKALFSKEEEQLLGTVASSSQP-SLETFQELLDKNRSVFHPSRTAKSLQDHWRLMK 126 (199)
T ss_pred ccCCCCHHHHHHHHhhhhccCC-cHHHHHHHHHhChhhhccccCHHHHHHHHHHHH
Confidence 5678999999999985544432 345576664433 4899999999998754
No 98
>smart00426 TEA TEA domain.
Probab=34.18 E-value=73 Score=24.55 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q 021756 26 GTKWTPQENKQFENALAVYDKD 47 (308)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~ 47 (308)
...|..+=+..|..||+.|+..
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~ 24 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPC 24 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCcc
Confidence 4579999999999999999864
No 99
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=33.96 E-value=1.5e+02 Score=20.14 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021756 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYK 72 (308)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~ 72 (308)
...+|.++...|+...+....-+...-..||+.+ |-+..+|..=|.
T Consensus 4 r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~-~l~~~qV~~WF~ 49 (56)
T smart00389 4 RTSFTPEQLEELEKEFQKNPYPSREEREELAAKL-GLSERQVKVWFQ 49 (56)
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-CcCHHHHHHhHH
Confidence 3459999999999998876654555678899988 788888865443
No 100
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=33.31 E-value=1.2e+02 Score=23.87 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756 32 QENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE 76 (308)
Q Consensus 32 EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~ 76 (308)
+.|.++..+|...+.-+ +..||+.+ |-+...|+++...|.+
T Consensus 3 ~~D~~il~~L~~~~~~~---~~~la~~l-~~s~~tv~~~l~~L~~ 43 (108)
T smart00344 3 EIDRKILEELQKDARIS---LAELAKKV-GLSPSTVHNRVKRLEE 43 (108)
T ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 45677777787766443 99999998 8999999999999875
No 101
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=32.32 E-value=63 Score=28.53 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756 28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74 (308)
Q Consensus 28 ~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L 74 (308)
.||.|+.++|.++... |.. =.+||..|+|.|.--|+-+...|
T Consensus 2 ~Wtde~~~~L~~lw~~-G~S----asqIA~~lg~vsRnAViGk~hRl 43 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GLS----ASQIARQLGGVSRNAVIGKAHRL 43 (162)
T ss_pred CCCHHHHHHHHHHHHc-CCC----HHHHHHHhCCcchhhhhhhhhcc
Confidence 5999999999886432 211 56999999878888887666554
No 102
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=31.67 E-value=59 Score=33.04 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHhhhCCCChhhhhhhh----cCC-CCHHHHHHHHHHHHHHHh
Q 021756 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNF----VTT-RTPTQVASHAQKYFNRQL 185 (308)
Q Consensus 135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~----V~t-RT~~Q~~shaqky~~r~~ 185 (308)
..||.||-..|...-++|-- +|-.|+--+ ++. ||...++.+|-..++.+.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~ 185 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLL 185 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHH
Confidence 46999999999999999998 999998432 555 999999998865565554
No 103
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=31.65 E-value=73 Score=27.56 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756 139 EEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180 (308)
Q Consensus 139 eEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky 180 (308)
.+-|+.+|.+|++=|+-.|..||+ .-+=|...|+.|.++.
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~--~lglS~~tv~~Ri~rL 52 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSK--RVGLSPTPCLERVRRL 52 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHH--HHCcCHHHHHHHHHHH
Confidence 567899999999999989999996 4688999999987665
No 104
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=29.50 E-value=78 Score=35.06 Aligned_cols=48 Identities=31% Similarity=0.580 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021756 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQL 185 (308)
Q Consensus 136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~ 185 (308)
.||.-+=..|+.|..+||+++=..|++ .+-+ |+..|..++.-++.|+.
T Consensus 797 ~w~k~df~~fi~a~eKygr~di~~ia~-~~e~-~~eev~~y~rvfwer~~ 844 (971)
T KOG0385|consen 797 NWTKRDFNQFIKANEKYGRDDIENIAA-EVEG-TPEEVGEYARVFWERLE 844 (971)
T ss_pred chhhhhHHHHHHHhhccCcchhhhhHH-hhcC-CHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999996 5666 99999988877766653
No 105
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=27.64 E-value=67 Score=31.36 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHhhCCC-----CCHHHHHHHHHHh
Q 021756 26 GTKWTPQENKQFENALAVYDKDT-PDRWIKVAAMIPG-----KTVGDVIKQYKEL 74 (308)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~t-~dRW~~IAa~vPG-----RT~~qc~~rY~~L 74 (308)
.+.|++|+-.+++.+++.+++.. .++|+.+|+.+-+ |..+++.+.-.+.
T Consensus 245 ~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~kka~k~ 299 (379)
T COG5269 245 IRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKM 299 (379)
T ss_pred HhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence 46899999999999999888754 6789999988764 5666776655444
No 106
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=23.60 E-value=95 Score=23.95 Aligned_cols=29 Identities=28% Similarity=0.604 Sum_probs=19.2
Q ss_pred CChhhhhhhh-cCC-CC--HHHHHHHHHHHHHH
Q 021756 155 GDWRNISRNF-VTT-RT--PTQVASHAQKYFNR 183 (308)
Q Consensus 155 G~W~~Iar~~-V~t-RT--~~Q~~shaqky~~r 183 (308)
+.|..|++.+ ++. -+ ..+++.+|.+|+..
T Consensus 58 ~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 58 KKWREVARKLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp TTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred chHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 3799999755 222 12 35789998888653
No 107
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=22.70 E-value=2.1e+02 Score=23.66 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756 32 QENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE 76 (308)
Q Consensus 32 EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~ 76 (308)
+-|.++.++|+.-+.- -+..||+.+ |.|...|.+|-++|++
T Consensus 8 ~~D~~IL~~L~~d~r~---~~~eia~~l-glS~~~v~~Ri~~L~~ 48 (154)
T COG1522 8 DIDRRILRLLQEDARI---SNAELAERV-GLSPSTVLRRIKRLEE 48 (154)
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3455666666655443 399999999 7999999999999875
No 108
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=22.49 E-value=97 Score=31.70 Aligned_cols=50 Identities=26% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCC----------ChhHHHHHhhCC---C--CCHHHHHHHHHHh
Q 021756 25 KGTKWTPQENKQFENALAVYDKDT----------PDRWIKVAAMIP---G--KTVGDVIKQYKEL 74 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t----------~dRW~~IAa~vP---G--RT~~qc~~rY~~L 74 (308)
....|+.+=+..|..||++|+... ..|=+.||.+|- | ||.+||--|-+-|
T Consensus 48 ~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 48 GEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 457899999999999999998653 334577888774 3 7888988887766
No 109
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=22.29 E-value=1.9e+02 Score=22.49 Aligned_cols=29 Identities=21% Similarity=0.516 Sum_probs=20.0
Q ss_pred ChhhhhhhhcC----CCCHHHHHHHHHHHHHHH
Q 021756 156 DWRNISRNFVT----TRTPTQVASHAQKYFNRQ 184 (308)
Q Consensus 156 ~W~~Iar~~V~----tRT~~Q~~shaqky~~r~ 184 (308)
.|..|++.+=. +....+++.+|.+|+...
T Consensus 55 ~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~y 87 (93)
T smart00501 55 KWKEIARELGIPDTSTSAASSLRKHYERYLLPF 87 (93)
T ss_pred CHHHHHHHhCCCcccchHHHHHHHHHHHHhHHH
Confidence 79999974422 223567888888886654
No 110
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=21.60 E-value=1.4e+02 Score=30.36 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC--------CCCHHHHHHHHHHhhhhhh
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP--------GKTVGDVIKQYKELEEDVS 79 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP--------GRT~~qc~~rY~~L~~Dv~ 79 (308)
.+..||.||...+++.++.++.. |..|.+ +| +-...+-++.|++.+..+.
T Consensus 36 ~gevW~~~~i~~~k~~ie~~GL~----~~vvEs-~pv~e~Ik~g~~~rd~~Ienyk~~irNla 93 (394)
T TIGR00695 36 NGEVWEKEEIRKRKEYIESAGLH----WSVVES-VPVHEAIKTGTGNYGRWIENYKQTLRNLA 93 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCe----EEEEeC-CCccHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45689999999999999999875 877643 33 3455666788888776543
No 111
>PF02509 Rota_NS35: Rotavirus non-structural protein 35; InterPro: IPR003668 Rotavirus non-structural protein 2 (NSP2) is a basic protein which possesses RNA-binding activity and is essential for genome replication []. It may also be important for viral RNA packaging.; GO: 0003723 RNA binding, 0019079 viral genome replication; PDB: 2GU0_B 2R8F_A 2R7P_A 2R7C_A 1L9V_A 2R7J_A.
Probab=20.76 E-value=45 Score=32.24 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHh---------hhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q 021756 136 PWTEEEHRQFLMGLK---------KFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKR 192 (308)
Q Consensus 136 pWTeEE~~llL~gl~---------kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~s~~k~kr 192 (308)
|=.+-+.+.|..-|+ .||+|.|+.+. + .||++||...|...++..|...
T Consensus 196 pi~d~~~kelvAelrwqyNkFAvItHGkgHyRvV~--y------s~v~nHAdRv~at~ks~~K~~~ 253 (316)
T PF02509_consen 196 PISDSNVKELVAELRWQYNKFAVITHGKGHYRVVK--Y------SSVANHADRVYATFKSNKKTGS 253 (316)
T ss_dssp ---HHHHHHHHHHHHHHTTTEEEEESSSSCEEEEE--G------GGHHHHHHHHHHHHCTTCCTT-
T ss_pred CCchHHHHHHHHHHHHhhcceEEEeccCceEEEEe--h------HHhhhhHHHHHHHHhcccccCC
Confidence 556666666665443 35999999886 2 6899999999999988655543
No 112
>PRK03906 mannonate dehydratase; Provisional
Probab=20.60 E-value=1.5e+02 Score=29.93 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC--------CCCHHHHHHHHHHhhhhh
Q 021756 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP--------GKTVGDVIKQYKELEEDV 78 (308)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP--------GRT~~qc~~rY~~L~~Dv 78 (308)
.+..||.||.+.+++.|+.++.. |..|.+ +| +-+..+-++.|++.+..+
T Consensus 36 ~g~~W~~~~i~~~~~~ie~~Gl~----~~vvEs-~pv~~~Ik~g~~~rd~~ie~y~~sirnl 92 (385)
T PRK03906 36 VGEVWPVEEILARKAEIEAAGLE----WSVVES-VPVHEDIKTGTPNRDRYIENYKQTLRNL 92 (385)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCe----EEEEeC-CCccHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 56789999999999999999975 777643 33 445566677787776554
No 113
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.56 E-value=81 Score=26.00 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHhhCCC
Q 021756 33 ENKQFENALAVYDKDTPDRWIKVAAMIPG 61 (308)
Q Consensus 33 Edk~Le~Ala~y~~~t~dRW~~IAa~vPG 61 (308)
|...|++|++.|.... |..++.++||
T Consensus 93 E~diLKKa~~~~~~~~---~~~~~~~~~~ 118 (121)
T PRK09413 93 ENELLKEAVEYGRAKK---WIAHAPLLPG 118 (121)
T ss_pred HHHHHHHHHHHhchhh---hhhcCCCCCC
Confidence 4455566666666543 8888877776
Done!