Query 021757
Match_columns 308
No_of_seqs 191 out of 779
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 5E-12 1.1E-16 94.9 9.6 61 232-292 3-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 6.5E-12 1.4E-16 94.1 9.2 61 232-292 3-63 (64)
3 KOG4005 Transcription factor X 99.3 3.8E-11 8.3E-16 111.8 11.1 75 232-306 67-141 (292)
4 KOG4343 bZIP transcription fac 99.3 1E-11 2.2E-16 125.7 7.8 70 227-296 274-343 (655)
5 KOG0709 CREB/ATF family transc 99.1 6.6E-11 1.4E-15 118.3 6.4 72 230-308 247-318 (472)
6 KOG3584 cAMP response element 99.1 1.3E-10 2.8E-15 110.8 7.2 60 228-287 285-344 (348)
7 PF07716 bZIP_2: Basic region 99.0 1.8E-09 3.9E-14 78.8 8.8 51 232-283 3-53 (54)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 4.8E-08 1E-12 78.4 -6.6 63 231-293 27-89 (92)
9 KOG0837 Transcriptional activa 98.0 2.6E-05 5.6E-10 74.0 8.3 56 232-287 203-259 (279)
10 KOG4571 Activating transcripti 97.3 0.0047 1E-07 59.7 12.5 66 232-304 224-290 (294)
11 KOG4196 bZIP transcription fac 97.2 0.0038 8.2E-08 54.1 9.9 51 232-282 51-101 (135)
12 KOG3119 Basic region leucine z 96.8 0.0059 1.3E-07 58.0 8.6 51 238-288 198-248 (269)
13 KOG3863 bZIP transcription fac 96.5 0.0058 1.2E-07 64.0 6.5 65 235-306 491-555 (604)
14 PF02183 HALZ: Homeobox associ 96.2 0.023 4.9E-07 40.7 6.3 43 266-308 2-44 (45)
15 PF06005 DUF904: Protein of un 95.7 0.093 2E-06 41.0 8.6 52 255-306 4-62 (72)
16 TIGR02449 conserved hypothetic 95.7 0.086 1.9E-06 40.7 8.1 50 257-306 2-51 (65)
17 PF06156 DUF972: Protein of un 95.3 0.098 2.1E-06 43.7 8.0 50 255-304 8-57 (107)
18 PRK13169 DNA replication intia 95.2 0.11 2.3E-06 43.8 7.9 49 255-303 8-56 (110)
19 PF06156 DUF972: Protein of un 94.9 0.15 3.2E-06 42.7 7.7 49 259-307 5-53 (107)
20 PRK10884 SH3 domain-containing 94.8 0.39 8.5E-06 44.3 11.1 51 255-305 118-168 (206)
21 PRK13729 conjugal transfer pil 94.8 0.084 1.8E-06 54.3 7.2 51 255-305 76-126 (475)
22 PF06005 DUF904: Protein of un 94.6 0.29 6.3E-06 38.3 8.3 52 255-306 18-69 (72)
23 COG3074 Uncharacterized protei 94.6 0.2 4.3E-06 39.6 7.2 51 256-306 19-69 (79)
24 TIGR02449 conserved hypothetic 94.6 0.33 7.1E-06 37.5 8.3 53 255-307 7-59 (65)
25 PF08614 ATG16: Autophagy prot 94.2 1.2 2.6E-05 40.1 12.5 73 231-303 113-185 (194)
26 PRK13169 DNA replication intia 94.1 0.27 5.9E-06 41.4 7.7 50 258-307 4-53 (110)
27 PRK10884 SH3 domain-containing 94.0 0.63 1.4E-05 43.0 10.5 52 249-300 119-170 (206)
28 COG4467 Regulator of replicati 93.7 0.36 7.7E-06 40.9 7.6 46 261-306 7-52 (114)
29 TIGR02894 DNA_bind_RsfA transc 93.5 0.39 8.4E-06 43.1 8.0 42 263-304 98-139 (161)
30 PF14197 Cep57_CLD_2: Centroso 93.5 0.59 1.3E-05 36.3 8.1 51 255-305 12-62 (69)
31 PF07989 Microtub_assoc: Micro 93.3 0.46 1E-05 37.4 7.2 50 257-306 2-59 (75)
32 PRK15422 septal ring assembly 93.1 0.52 1.1E-05 37.8 7.3 50 257-306 20-69 (79)
33 PF10224 DUF2205: Predicted co 92.6 0.93 2E-05 36.3 8.1 48 258-305 19-66 (80)
34 PF04102 SlyX: SlyX; InterPro 91.9 0.95 2.1E-05 34.7 7.2 50 255-304 4-53 (69)
35 PF11559 ADIP: Afadin- and alp 91.0 4.5 9.7E-05 34.7 11.3 67 234-300 45-111 (151)
36 PF13747 DUF4164: Domain of un 90.9 5.1 0.00011 32.4 10.8 75 232-306 9-83 (89)
37 PRK11637 AmiB activator; Provi 90.2 3.9 8.5E-05 40.8 11.7 56 251-306 71-126 (428)
38 COG4467 Regulator of replicati 90.2 1.3 2.8E-05 37.6 6.9 47 255-301 8-54 (114)
39 smart00340 HALZ homeobox assoc 89.9 0.66 1.4E-05 33.3 4.2 27 279-305 8-34 (44)
40 TIGR00219 mreC rod shape-deter 89.6 0.79 1.7E-05 43.9 6.0 37 263-299 67-107 (283)
41 PRK02119 hypothetical protein; 89.6 2.4 5.2E-05 33.1 7.6 50 254-303 8-57 (73)
42 KOG4005 Transcription factor X 89.5 4.2 9E-05 39.1 10.5 77 231-307 70-149 (292)
43 PF07888 CALCOCO1: Calcium bin 89.4 4.4 9.5E-05 42.7 11.7 73 234-306 150-222 (546)
44 PF14197 Cep57_CLD_2: Centroso 89.4 2.6 5.6E-05 32.7 7.6 50 256-305 20-69 (69)
45 PF09304 Cortex-I_coil: Cortex 89.0 4.2 9E-05 34.4 9.1 56 235-290 17-72 (107)
46 PRK02119 hypothetical protein; 88.6 3.4 7.4E-05 32.3 7.9 52 256-307 3-54 (73)
47 TIGR03752 conj_TIGR03752 integ 88.6 2 4.3E-05 44.4 8.3 31 256-286 74-104 (472)
48 PRK04406 hypothetical protein; 88.6 3.7 8E-05 32.3 8.1 49 255-303 11-59 (75)
49 PF13851 GAS: Growth-arrest sp 88.3 11 0.00024 34.5 12.2 58 232-289 70-127 (201)
50 PRK11637 AmiB activator; Provi 88.1 6.9 0.00015 39.1 11.7 61 246-306 59-119 (428)
51 PRK00295 hypothetical protein; 87.9 4.5 9.8E-05 31.1 8.0 49 255-303 5-53 (68)
52 PRK02793 phi X174 lysis protei 87.8 3.8 8.3E-05 31.9 7.7 50 255-304 8-57 (72)
53 PF04102 SlyX: SlyX; InterPro 87.6 4.4 9.5E-05 31.0 7.8 49 259-307 1-49 (69)
54 PF12325 TMF_TATA_bd: TATA ele 87.5 3.8 8.2E-05 35.0 8.2 35 272-306 71-112 (120)
55 PRK15422 septal ring assembly 87.5 3.9 8.4E-05 32.9 7.6 50 255-304 4-60 (79)
56 PF06785 UPF0242: Uncharacteri 87.0 2.4 5.2E-05 42.4 7.6 55 249-303 121-175 (401)
57 PF07106 TBPIP: Tat binding pr 87.0 2.8 6.1E-05 36.7 7.3 50 255-304 86-137 (169)
58 PRK04325 hypothetical protein; 86.9 4.1 8.8E-05 31.9 7.4 49 255-303 9-57 (74)
59 PF15294 Leu_zip: Leucine zipp 86.8 2.4 5.3E-05 41.1 7.4 45 260-304 130-174 (278)
60 KOG1414 Transcriptional activa 86.7 0.033 7.1E-07 55.5 -5.5 58 228-285 148-209 (395)
61 PRK04325 hypothetical protein; 86.6 4.9 0.00011 31.4 7.7 52 256-307 3-54 (74)
62 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.3 11 0.00024 31.9 10.4 36 267-302 96-131 (132)
63 PRK04406 hypothetical protein; 86.3 5 0.00011 31.6 7.6 51 257-307 6-56 (75)
64 PRK00736 hypothetical protein; 85.9 5.9 0.00013 30.5 7.7 49 255-303 5-53 (68)
65 PF10186 Atg14: UV radiation r 85.9 14 0.0003 34.0 11.7 29 260-288 68-96 (302)
66 PF02183 HALZ: Homeobox associ 85.9 2.2 4.8E-05 30.5 5.0 32 275-306 4-35 (45)
67 PF07106 TBPIP: Tat binding pr 85.6 3.1 6.6E-05 36.4 6.9 28 256-283 110-137 (169)
68 PRK10803 tol-pal system protei 85.3 6.1 0.00013 37.4 9.2 50 256-305 55-104 (263)
69 PRK00846 hypothetical protein; 85.3 5.6 0.00012 31.7 7.5 49 255-303 13-61 (77)
70 PRK02793 phi X174 lysis protei 85.2 6.3 0.00014 30.7 7.6 50 258-307 4-53 (72)
71 PF08614 ATG16: Autophagy prot 85.0 3.2 6.9E-05 37.3 6.9 47 256-302 131-177 (194)
72 COG4942 Membrane-bound metallo 84.8 12 0.00026 38.3 11.5 71 234-304 38-108 (420)
73 PRK00295 hypothetical protein; 84.6 6.1 0.00013 30.4 7.3 48 260-307 3-50 (68)
74 PF10473 CENP-F_leu_zip: Leuci 84.5 24 0.00051 31.0 11.8 64 238-301 35-98 (140)
75 smart00338 BRLZ basic region l 84.4 4.7 0.0001 30.0 6.4 38 262-299 26-63 (65)
76 PRK13922 rod shape-determining 84.3 4.8 0.0001 37.7 8.0 36 264-299 71-109 (276)
77 KOG1414 Transcriptional activa 84.3 0.45 9.7E-06 47.6 1.2 54 233-286 284-338 (395)
78 PF12718 Tropomyosin_1: Tropom 84.2 7.3 0.00016 33.9 8.5 23 257-279 37-59 (143)
79 COG4026 Uncharacterized protei 84.1 7.5 0.00016 37.2 9.0 45 257-301 144-188 (290)
80 PHA03162 hypothetical protein; 84.0 2.6 5.6E-05 36.9 5.5 28 251-278 9-36 (135)
81 TIGR02894 DNA_bind_RsfA transc 84.0 5.4 0.00012 35.9 7.7 38 252-289 108-145 (161)
82 PF14662 CCDC155: Coiled-coil 83.9 5.4 0.00012 36.9 7.8 46 257-302 10-55 (193)
83 PF12808 Mto2_bdg: Micro-tubul 83.9 3.6 7.8E-05 30.6 5.5 50 252-304 1-50 (52)
84 COG4026 Uncharacterized protei 83.9 6.1 0.00013 37.8 8.3 50 256-305 136-185 (290)
85 PF09755 DUF2046: Uncharacteri 83.8 4.6 9.9E-05 39.8 7.8 49 258-306 23-71 (310)
86 PF05278 PEARLI-4: Arabidopsis 83.8 18 0.00039 35.1 11.6 54 254-307 206-259 (269)
87 PHA03155 hypothetical protein; 83.6 5.6 0.00012 34.0 7.2 25 256-280 9-33 (115)
88 PF10805 DUF2730: Protein of u 83.6 6.7 0.00015 32.4 7.6 36 255-290 49-86 (106)
89 COG3074 Uncharacterized protei 83.5 8.5 0.00018 30.6 7.7 48 255-302 25-72 (79)
90 PF08647 BRE1: BRE1 E3 ubiquit 83.0 23 0.00051 28.7 10.6 65 237-301 6-70 (96)
91 PF00170 bZIP_1: bZIP transcri 82.9 7.1 0.00015 29.0 6.9 19 264-282 28-46 (64)
92 KOG1962 B-cell receptor-associ 82.9 4.6 0.0001 37.9 7.1 45 256-300 166-210 (216)
93 PF11932 DUF3450: Protein of u 82.7 14 0.00031 34.3 10.4 44 253-296 54-97 (251)
94 COG3883 Uncharacterized protei 82.7 7.2 0.00016 37.7 8.5 46 257-302 40-85 (265)
95 PF15070 GOLGA2L5: Putative go 82.6 16 0.00035 39.0 11.9 46 251-296 118-187 (617)
96 PF07798 DUF1640: Protein of u 82.4 6.4 0.00014 35.0 7.6 48 259-306 48-96 (177)
97 PF06810 Phage_GP20: Phage min 82.4 5.4 0.00012 35.2 7.0 13 257-269 36-48 (155)
98 PF05266 DUF724: Protein of un 82.3 20 0.00043 32.8 10.9 73 233-305 88-174 (190)
99 PF04899 MbeD_MobD: MbeD/MobD 82.2 12 0.00025 29.4 8.0 50 258-307 10-59 (70)
100 PRK09039 hypothetical protein; 81.8 6.2 0.00013 38.9 7.9 50 257-306 132-181 (343)
101 PF14662 CCDC155: Coiled-coil 81.7 13 0.00029 34.4 9.4 42 258-299 98-139 (193)
102 PF01166 TSC22: TSC-22/dip/bun 81.4 2.1 4.5E-05 32.7 3.4 29 270-298 15-43 (59)
103 PRK00846 hypothetical protein; 81.3 12 0.00025 29.9 7.8 50 258-307 9-58 (77)
104 PF12711 Kinesin-relat_1: Kine 81.3 9.6 0.00021 31.0 7.5 21 284-304 45-65 (86)
105 PRK00888 ftsB cell division pr 81.1 4.2 9.1E-05 33.7 5.5 33 251-283 30-62 (105)
106 PF07407 Seadorna_VP6: Seadorn 80.9 2.9 6.3E-05 41.8 5.3 32 263-296 33-64 (420)
107 PF08172 CASP_C: CASP C termin 80.8 5.6 0.00012 37.8 7.0 42 255-303 93-134 (248)
108 PHA02562 46 endonuclease subun 80.7 17 0.00038 36.8 11.0 8 113-120 114-121 (562)
109 PRK00888 ftsB cell division pr 80.7 7.6 0.00016 32.2 6.9 35 256-290 28-62 (105)
110 PRK00736 hypothetical protein; 80.6 11 0.00023 29.0 7.3 48 260-307 3-50 (68)
111 KOG3119 Basic region leucine z 80.5 7.5 0.00016 37.1 7.8 48 241-288 208-255 (269)
112 PF09726 Macoilin: Transmembra 80.4 14 0.0003 40.0 10.5 38 260-297 543-580 (697)
113 PF10805 DUF2730: Protein of u 80.2 12 0.00025 31.0 7.9 49 258-306 45-95 (106)
114 PF11932 DUF3450: Protein of u 80.0 31 0.00067 32.1 11.6 45 258-302 52-96 (251)
115 KOG2391 Vacuolar sorting prote 79.8 8.5 0.00019 38.6 8.1 28 273-300 250-277 (365)
116 PF05812 Herpes_BLRF2: Herpesv 79.8 11 0.00024 32.4 7.7 28 253-280 1-28 (118)
117 PF12718 Tropomyosin_1: Tropom 79.7 11 0.00024 32.7 8.0 47 256-302 15-61 (143)
118 PF12325 TMF_TATA_bd: TATA ele 79.4 14 0.0003 31.6 8.3 16 290-305 68-83 (120)
119 PF08826 DMPK_coil: DMPK coile 79.3 17 0.00038 27.7 7.9 44 261-304 17-60 (61)
120 PF04156 IncA: IncA protein; 79.3 42 0.00091 29.5 11.7 58 246-303 121-178 (191)
121 PF15035 Rootletin: Ciliary ro 79.2 11 0.00024 34.2 8.1 52 255-306 67-118 (182)
122 KOG1103 Predicted coiled-coil 78.9 9.8 0.00021 38.7 8.2 64 244-307 227-290 (561)
123 PF04977 DivIC: Septum formati 78.8 6.6 0.00014 29.4 5.6 30 252-281 21-50 (80)
124 PF05377 FlaC_arch: Flagella a 78.4 15 0.00032 27.7 7.1 30 257-286 2-31 (55)
125 KOG1962 B-cell receptor-associ 78.4 24 0.00053 33.2 10.2 54 254-307 157-210 (216)
126 PF08172 CASP_C: CASP C termin 78.1 9.8 0.00021 36.1 7.7 27 255-281 107-133 (248)
127 PF09789 DUF2353: Uncharacteri 78.0 19 0.0004 35.7 9.8 47 258-304 68-114 (319)
128 COG4942 Membrane-bound metallo 77.9 19 0.00041 36.9 10.1 36 257-292 75-110 (420)
129 TIGR02209 ftsL_broad cell divi 77.7 10 0.00022 29.1 6.5 30 252-281 28-57 (85)
130 PF11180 DUF2968: Protein of u 77.6 48 0.001 30.8 11.7 75 231-306 103-177 (192)
131 PF05103 DivIVA: DivIVA protei 77.6 1.3 2.9E-05 36.5 1.6 47 255-301 25-71 (131)
132 PF05837 CENP-H: Centromere pr 77.6 9.6 0.00021 31.5 6.6 51 256-307 18-68 (106)
133 PF05529 Bap31: B-cell recepto 77.3 23 0.00049 31.6 9.5 39 267-305 152-190 (192)
134 COG1579 Zn-ribbon protein, pos 77.2 46 0.001 31.7 11.8 51 234-284 31-81 (239)
135 PF10506 MCC-bdg_PDZ: PDZ doma 77.1 11 0.00024 29.2 6.4 49 259-307 2-50 (67)
136 PF14915 CCDC144C: CCDC144C pr 77.0 23 0.0005 34.9 10.0 64 243-306 181-244 (305)
137 PRK10698 phage shock protein P 77.0 20 0.00043 33.3 9.3 52 256-307 100-151 (222)
138 PF12709 Kinetocho_Slk19: Cent 76.9 13 0.00028 30.4 7.0 40 253-292 40-79 (87)
139 PF03962 Mnd1: Mnd1 family; I 76.5 21 0.00045 32.4 9.1 13 255-267 83-95 (188)
140 TIGR02977 phageshock_pspA phag 76.4 17 0.00037 33.3 8.6 52 255-306 99-150 (219)
141 PF04111 APG6: Autophagy prote 76.1 55 0.0012 32.0 12.4 53 254-306 77-129 (314)
142 KOG0982 Centrosomal protein Nu 76.0 30 0.00065 35.9 10.8 51 257-307 299-349 (502)
143 PF06216 RTBV_P46: Rice tungro 75.9 16 0.00036 35.6 8.5 53 255-307 64-116 (389)
144 PF10174 Cast: RIM-binding pro 75.7 13 0.00027 40.9 8.6 56 251-306 297-352 (775)
145 PF10224 DUF2205: Predicted co 75.4 19 0.00042 28.8 7.5 40 256-295 31-70 (80)
146 PF08317 Spc7: Spc7 kinetochor 75.1 56 0.0012 31.7 12.2 50 257-306 151-200 (325)
147 PF00038 Filament: Intermediat 75.1 63 0.0014 30.4 12.3 51 256-306 256-306 (312)
148 PF07888 CALCOCO1: Calcium bin 75.1 31 0.00067 36.6 11.0 36 273-308 421-456 (546)
149 PF05266 DUF724: Protein of un 75.0 48 0.001 30.3 11.0 57 249-305 125-181 (190)
150 PF07716 bZIP_2: Basic region 74.9 9 0.0002 27.7 5.1 30 275-304 24-53 (54)
151 PF04977 DivIC: Septum formati 74.7 18 0.00039 27.0 7.0 31 258-288 20-50 (80)
152 KOG0977 Nuclear envelope prote 74.6 21 0.00046 37.8 9.6 60 246-305 132-191 (546)
153 PRK13729 conjugal transfer pil 74.3 14 0.0003 38.5 8.1 16 114-129 4-19 (475)
154 PRK09039 hypothetical protein; 74.1 47 0.001 32.8 11.5 26 275-300 136-161 (343)
155 KOG3650 Predicted coiled-coil 73.4 17 0.00036 30.8 7.0 41 262-302 63-103 (120)
156 PF08317 Spc7: Spc7 kinetochor 73.3 18 0.00039 35.1 8.3 9 38-46 15-23 (325)
157 PF00038 Filament: Intermediat 72.9 56 0.0012 30.8 11.4 43 264-306 211-253 (312)
158 KOG4797 Transcriptional regula 72.8 8.7 0.00019 32.9 5.2 22 275-296 73-94 (123)
159 PF10211 Ax_dynein_light: Axon 72.5 45 0.00098 30.2 10.2 38 257-294 122-159 (189)
160 PRK10803 tol-pal system protei 72.5 12 0.00025 35.6 6.6 44 252-295 58-101 (263)
161 PF09744 Jnk-SapK_ap_N: JNK_SA 72.5 12 0.00025 33.5 6.2 46 258-303 92-137 (158)
162 PF04111 APG6: Autophagy prote 72.4 21 0.00046 34.8 8.6 28 255-282 64-91 (314)
163 PF06785 UPF0242: Uncharacteri 72.3 40 0.00087 34.0 10.4 69 234-306 75-157 (401)
164 KOG4196 bZIP transcription fac 71.7 47 0.001 29.2 9.5 41 264-304 76-116 (135)
165 KOG2077 JNK/SAPK-associated pr 71.6 12 0.00025 40.2 6.9 49 258-306 325-373 (832)
166 PF10482 CtIP_N: Tumour-suppre 71.6 30 0.00064 29.9 8.2 55 253-307 12-66 (120)
167 COG3883 Uncharacterized protei 71.6 21 0.00045 34.6 8.1 52 251-302 55-110 (265)
168 PF04849 HAP1_N: HAP1 N-termin 71.5 25 0.00054 34.7 8.8 33 268-300 233-265 (306)
169 PF04999 FtsL: Cell division p 71.2 14 0.00031 29.3 6.0 36 268-303 34-69 (97)
170 PF04642 DUF601: Protein of un 71.1 4.4 9.6E-05 39.2 3.5 53 255-307 217-269 (311)
171 PF05700 BCAS2: Breast carcino 70.9 27 0.00059 32.2 8.5 45 260-304 173-217 (221)
172 COG1579 Zn-ribbon protein, pos 70.8 86 0.0019 29.9 12.0 51 254-304 88-138 (239)
173 PHA02562 46 endonuclease subun 70.7 63 0.0014 32.8 11.9 26 280-305 217-242 (562)
174 PF10211 Ax_dynein_light: Axon 70.5 67 0.0014 29.1 10.8 36 252-287 124-159 (189)
175 KOG0250 DNA repair protein RAD 70.4 41 0.00089 38.3 11.1 55 252-306 369-424 (1074)
176 PF09738 DUF2051: Double stran 70.4 26 0.00057 34.3 8.7 78 227-304 85-168 (302)
177 PF10186 Atg14: UV radiation r 70.1 80 0.0017 29.0 11.5 24 255-278 70-93 (302)
178 KOG2129 Uncharacterized conser 70.1 6.9 0.00015 40.4 4.7 48 258-305 46-93 (552)
179 PF11544 Spc42p: Spindle pole 70.0 49 0.0011 26.5 8.6 47 258-304 8-54 (76)
180 KOG3335 Predicted coiled-coil 69.8 11 0.00023 34.7 5.4 51 232-288 89-139 (181)
181 PF03980 Nnf1: Nnf1 ; InterPr 69.8 7.8 0.00017 31.6 4.3 30 253-282 78-107 (109)
182 KOG1853 LIS1-interacting prote 69.6 57 0.0012 31.9 10.5 22 285-306 93-114 (333)
183 KOG1029 Endocytic adaptor prot 69.6 42 0.00092 37.4 10.6 23 284-306 431-453 (1118)
184 PF07558 Shugoshin_N: Shugoshi 69.4 4.8 0.00011 28.8 2.6 34 266-299 11-44 (46)
185 PF12329 TMF_DNA_bd: TATA elem 69.4 43 0.00092 26.1 8.1 11 264-274 14-24 (74)
186 PF10146 zf-C4H2: Zinc finger- 69.0 36 0.00079 32.1 9.0 34 255-288 32-65 (230)
187 PF08826 DMPK_coil: DMPK coile 68.8 32 0.00069 26.3 7.0 40 267-306 16-55 (61)
188 PF10473 CENP-F_leu_zip: Leuci 68.8 82 0.0018 27.7 11.7 37 269-305 59-95 (140)
189 PF05837 CENP-H: Centromere pr 68.6 22 0.00048 29.4 6.7 28 271-298 53-80 (106)
190 PF01486 K-box: K-box region; 68.6 23 0.00049 28.5 6.7 31 270-300 69-99 (100)
191 KOG0946 ER-Golgi vesicle-tethe 68.3 57 0.0012 36.4 11.3 63 238-300 654-716 (970)
192 KOG0804 Cytoplasmic Zn-finger 68.2 61 0.0013 33.8 11.0 32 275-306 388-419 (493)
193 PF09304 Cortex-I_coil: Cortex 68.1 75 0.0016 27.0 12.1 57 250-306 11-67 (107)
194 PF05377 FlaC_arch: Flagella a 68.0 22 0.00047 26.8 5.9 34 256-289 8-41 (55)
195 PF10828 DUF2570: Protein of u 68.0 68 0.0015 26.5 9.7 51 257-307 34-84 (110)
196 PF04871 Uso1_p115_C: Uso1 / p 67.5 82 0.0018 27.2 10.6 51 253-303 60-111 (136)
197 COG1340 Uncharacterized archae 67.0 1.1E+02 0.0024 30.1 12.1 73 234-306 26-99 (294)
198 PF05667 DUF812: Protein of un 66.9 27 0.00059 37.2 8.6 44 257-300 337-380 (594)
199 COG2433 Uncharacterized conser 66.6 46 0.00099 35.9 10.0 32 255-286 436-467 (652)
200 PRK14127 cell division protein 66.5 44 0.00096 28.2 8.2 49 258-306 40-101 (109)
201 PF08537 NBP1: Fungal Nap bind 66.4 75 0.0016 31.7 10.9 67 233-299 121-219 (323)
202 PF13815 Dzip-like_N: Iguana/D 66.4 44 0.00096 27.8 8.2 40 267-306 78-117 (118)
203 TIGR02209 ftsL_broad cell divi 66.1 25 0.00053 27.0 6.2 35 269-303 24-58 (85)
204 PF07558 Shugoshin_N: Shugoshi 65.7 7.4 0.00016 27.9 2.9 42 236-278 3-44 (46)
205 PF02403 Seryl_tRNA_N: Seryl-t 65.7 57 0.0012 26.2 8.5 20 286-305 70-89 (108)
206 COG2900 SlyX Uncharacterized p 65.5 50 0.0011 26.2 7.7 48 255-302 8-55 (72)
207 PF07412 Geminin: Geminin; In 65.5 18 0.0004 33.6 6.2 36 269-304 125-160 (200)
208 KOG0250 DNA repair protein RAD 65.4 59 0.0013 37.1 11.0 68 239-306 363-431 (1074)
209 PF11365 DUF3166: Protein of u 65.4 32 0.00069 28.6 6.9 21 284-304 23-43 (96)
210 COG2433 Uncharacterized conser 65.2 26 0.00056 37.7 7.9 24 257-280 424-447 (652)
211 KOG4571 Activating transcripti 64.9 48 0.001 32.6 9.1 59 231-289 228-289 (294)
212 PF15035 Rootletin: Ciliary ro 64.7 37 0.0008 30.9 7.9 28 260-287 86-113 (182)
213 TIGR03752 conj_TIGR03752 integ 64.7 18 0.00039 37.6 6.6 26 281-306 114-139 (472)
214 PF05600 DUF773: Protein of un 64.7 39 0.00085 35.2 9.1 50 252-301 443-492 (507)
215 PF09730 BicD: Microtubule-ass 64.0 67 0.0014 35.2 10.9 48 257-304 71-118 (717)
216 KOG1318 Helix loop helix trans 63.8 46 0.00099 34.2 9.1 75 232-306 227-320 (411)
217 PF04012 PspA_IM30: PspA/IM30 63.7 61 0.0013 29.3 9.2 49 257-305 100-148 (221)
218 PF13815 Dzip-like_N: Iguana/D 63.6 30 0.00066 28.8 6.7 40 260-299 78-117 (118)
219 PF09738 DUF2051: Double stran 63.4 74 0.0016 31.2 10.3 51 257-307 114-164 (302)
220 KOG2264 Exostosin EXT1L [Signa 63.4 37 0.00081 36.6 8.6 51 255-305 93-143 (907)
221 PF13863 DUF4200: Domain of un 63.2 83 0.0018 25.7 9.5 46 237-282 63-108 (126)
222 KOG0977 Nuclear envelope prote 62.6 25 0.00054 37.2 7.3 49 256-304 163-211 (546)
223 PF04849 HAP1_N: HAP1 N-termin 62.5 41 0.00089 33.2 8.3 23 110-132 94-116 (306)
224 PF08232 Striatin: Striatin fa 62.5 63 0.0014 27.8 8.6 45 258-302 28-72 (134)
225 KOG0288 WD40 repeat protein Ti 62.3 55 0.0012 33.8 9.4 28 254-281 47-74 (459)
226 PF04340 DUF484: Protein of un 62.2 33 0.00071 31.3 7.2 44 257-304 42-85 (225)
227 COG2900 SlyX Uncharacterized p 62.0 62 0.0014 25.7 7.7 48 259-306 5-52 (72)
228 KOG4360 Uncharacterized coiled 62.0 32 0.00069 36.4 7.8 45 257-301 221-265 (596)
229 PF03670 UPF0184: Uncharacteri 62.0 56 0.0012 26.6 7.6 42 256-304 34-75 (83)
230 PF12777 MT: Microtubule-bindi 61.7 44 0.00095 32.7 8.4 50 257-306 230-279 (344)
231 PF12711 Kinesin-relat_1: Kine 61.6 58 0.0013 26.6 7.7 42 263-306 45-86 (86)
232 PF05335 DUF745: Protein of un 61.6 55 0.0012 30.0 8.5 57 251-307 63-119 (188)
233 KOG0709 CREB/ATF family transc 61.3 21 0.00045 37.1 6.2 53 230-282 251-313 (472)
234 PF04859 DUF641: Plant protein 61.2 30 0.00065 30.1 6.4 43 256-298 88-130 (131)
235 KOG0995 Centromere-associated 61.0 30 0.00066 36.8 7.5 45 255-299 280-324 (581)
236 KOG0243 Kinesin-like protein [ 60.9 52 0.0011 37.4 9.6 69 238-306 414-492 (1041)
237 KOG0288 WD40 repeat protein Ti 60.8 1E+02 0.0022 32.0 10.9 26 261-286 47-72 (459)
238 COG3879 Uncharacterized protei 60.6 51 0.0011 31.7 8.3 17 290-306 89-105 (247)
239 PF14988 DUF4515: Domain of un 60.5 94 0.002 28.7 9.9 48 258-305 152-199 (206)
240 PF15397 DUF4618: Domain of un 60.4 1.5E+02 0.0033 28.6 11.5 47 260-306 177-223 (258)
241 PF09744 Jnk-SapK_ap_N: JNK_SA 60.4 1.2E+02 0.0025 27.1 10.2 30 265-301 85-114 (158)
242 PF13805 Pil1: Eisosome compon 60.2 66 0.0014 31.3 9.1 69 233-305 126-194 (271)
243 PF15369 KIAA1328: Uncharacter 60.1 1.5E+02 0.0033 29.6 11.7 57 229-287 3-65 (328)
244 PF15619 Lebercilin: Ciliary p 59.9 50 0.0011 30.3 7.9 39 269-307 150-188 (194)
245 PF01166 TSC22: TSC-22/dip/bun 59.9 20 0.00044 27.4 4.5 26 257-282 16-41 (59)
246 KOG4360 Uncharacterized coiled 59.9 41 0.00088 35.7 8.1 58 251-308 194-251 (596)
247 PF06428 Sec2p: GDP/GTP exchan 59.8 1E+02 0.0022 25.6 9.2 25 280-304 41-65 (100)
248 KOG0483 Transcription factor H 59.8 18 0.00038 33.5 5.0 41 266-306 109-149 (198)
249 PF04728 LPP: Lipoprotein leuc 59.4 75 0.0016 24.0 8.8 45 256-300 4-48 (56)
250 PF09728 Taxilin: Myosin-like 59.0 55 0.0012 32.0 8.5 52 255-306 244-295 (309)
251 PF11500 Cut12: Spindle pole b 59.0 86 0.0019 28.1 9.0 56 233-288 83-138 (152)
252 PF14282 FlxA: FlxA-like prote 58.9 58 0.0013 26.9 7.5 29 251-279 47-75 (106)
253 cd07596 BAR_SNX The Bin/Amphip 58.8 1.2E+02 0.0026 26.2 11.1 51 238-288 114-171 (218)
254 KOG4643 Uncharacterized coiled 58.8 38 0.00083 38.5 8.1 28 255-282 530-557 (1195)
255 COG1792 MreC Cell shape-determ 58.1 33 0.00071 33.1 6.8 41 255-299 66-106 (284)
256 KOG3156 Uncharacterized membra 58.1 53 0.0012 31.0 7.8 35 272-306 104-139 (220)
257 PF09727 CortBP2: Cortactin-bi 58.0 1.1E+02 0.0025 28.3 9.9 44 264-307 136-179 (192)
258 PTZ00454 26S protease regulato 57.9 41 0.0009 33.8 7.7 34 259-292 26-59 (398)
259 COG1196 Smc Chromosome segrega 57.9 1E+02 0.0023 35.0 11.6 49 256-304 440-488 (1163)
260 PF05700 BCAS2: Breast carcino 57.4 65 0.0014 29.7 8.3 30 277-306 176-205 (221)
261 KOG0999 Microtubule-associated 57.1 98 0.0021 33.4 10.3 72 232-303 115-190 (772)
262 TIGR02231 conserved hypothetic 57.0 1.3E+02 0.0028 31.0 11.2 41 266-306 128-168 (525)
263 PF11544 Spc42p: Spindle pole 57.0 27 0.00059 27.9 5.0 42 257-298 14-55 (76)
264 PF05911 DUF869: Plant protein 56.8 36 0.00079 37.4 7.5 53 254-306 91-164 (769)
265 KOG0946 ER-Golgi vesicle-tethe 56.8 79 0.0017 35.4 9.9 60 248-307 657-716 (970)
266 PF03980 Nnf1: Nnf1 ; InterPr 56.6 26 0.00055 28.5 5.0 32 273-304 77-108 (109)
267 PRK14160 heat shock protein Gr 56.5 55 0.0012 30.6 7.7 46 256-301 55-100 (211)
268 PF15030 DUF4527: Protein of u 56.3 1.9E+02 0.004 28.2 11.2 76 231-306 12-88 (277)
269 PF10226 DUF2216: Uncharacteri 56.3 1.3E+02 0.0028 28.1 9.9 59 231-289 20-82 (195)
270 KOG0980 Actin-binding protein 56.1 1.2E+02 0.0027 34.1 11.3 67 239-305 450-516 (980)
271 KOG4343 bZIP transcription fac 56.1 56 0.0012 34.9 8.4 30 274-303 307-336 (655)
272 PF09726 Macoilin: Transmembra 55.9 57 0.0012 35.5 8.7 12 34-46 189-200 (697)
273 PF01486 K-box: K-box region; 55.9 61 0.0013 26.0 7.0 50 228-279 46-99 (100)
274 PF11180 DUF2968: Protein of u 55.8 1.3E+02 0.0028 28.0 9.8 36 257-292 149-184 (192)
275 PF13851 GAS: Growth-arrest sp 55.8 1.7E+02 0.0036 26.9 11.5 29 275-303 92-120 (201)
276 PF04899 MbeD_MobD: MbeD/MobD 55.5 99 0.0021 24.2 7.8 31 258-288 31-61 (70)
277 PRK13922 rod shape-determining 55.4 99 0.0022 28.9 9.4 36 272-307 72-110 (276)
278 KOG4403 Cell surface glycoprot 55.0 73 0.0016 33.3 8.8 69 234-306 242-318 (575)
279 PRK02224 chromosome segregatio 54.8 1.6E+02 0.0035 31.9 12.0 49 258-306 352-400 (880)
280 PF00261 Tropomyosin: Tropomyo 54.7 74 0.0016 29.4 8.3 10 296-305 175-184 (237)
281 smart00787 Spc7 Spc7 kinetocho 54.6 2.2E+02 0.0048 28.0 12.2 50 257-306 146-195 (312)
282 PF06548 Kinesin-related: Kine 54.4 54 0.0012 34.2 7.8 54 255-308 385-473 (488)
283 PRK10963 hypothetical protein; 54.4 49 0.0011 30.5 7.0 15 270-284 69-83 (223)
284 KOG0933 Structural maintenance 53.5 1.4E+02 0.003 34.3 11.2 40 267-306 820-859 (1174)
285 PRK04863 mukB cell division pr 53.4 1.5E+02 0.0033 35.2 12.1 20 234-253 321-340 (1486)
286 KOG0239 Kinesin (KAR3 subfamil 53.3 92 0.002 33.8 9.8 15 290-304 300-314 (670)
287 PF09325 Vps5: Vps5 C terminal 53.3 1.1E+02 0.0024 27.3 9.0 50 240-289 134-190 (236)
288 PF03245 Phage_lysis: Bacterio 53.2 1.3E+02 0.0029 25.5 9.0 47 255-301 14-60 (125)
289 PF14645 Chibby: Chibby family 53.0 54 0.0012 27.8 6.5 23 258-280 81-103 (116)
290 KOG1103 Predicted coiled-coil 52.7 1.1E+02 0.0023 31.5 9.4 42 262-303 139-180 (561)
291 PF13118 DUF3972: Protein of u 52.2 66 0.0014 28.0 7.0 47 256-302 79-125 (126)
292 cd07596 BAR_SNX The Bin/Amphip 52.1 98 0.0021 26.8 8.3 55 248-302 110-171 (218)
293 PHA03011 hypothetical protein; 51.8 1.1E+02 0.0025 26.0 8.1 52 255-306 64-115 (120)
294 PF09789 DUF2353: Uncharacteri 51.6 1.1E+02 0.0024 30.4 9.3 27 280-306 69-95 (319)
295 PF09730 BicD: Microtubule-ass 51.3 63 0.0014 35.4 8.2 42 262-303 48-89 (717)
296 PF05667 DUF812: Protein of un 51.1 68 0.0015 34.3 8.3 52 255-306 328-379 (594)
297 PF12709 Kinetocho_Slk19: Cent 51.0 1.3E+02 0.0028 24.7 8.0 49 255-303 27-76 (87)
298 PF10205 KLRAQ: Predicted coil 50.8 1.5E+02 0.0032 25.0 8.6 31 256-286 41-71 (102)
299 KOG0804 Cytoplasmic Zn-finger 50.8 61 0.0013 33.9 7.5 66 241-306 371-444 (493)
300 PF08232 Striatin: Striatin fa 50.3 1.1E+02 0.0025 26.3 8.2 59 238-296 15-73 (134)
301 PF07200 Mod_r: Modifier of ru 50.0 99 0.0021 26.3 7.8 63 239-303 40-102 (150)
302 PF06216 RTBV_P46: Rice tungro 50.0 97 0.0021 30.4 8.4 45 242-289 68-112 (389)
303 PF01920 Prefoldin_2: Prefoldi 49.9 56 0.0012 25.6 5.9 35 257-291 64-98 (106)
304 COG5570 Uncharacterized small 49.9 32 0.00068 26.0 4.0 52 255-306 5-56 (57)
305 KOG0976 Rho/Rac1-interacting s 49.8 1.6E+02 0.0035 33.3 10.8 25 229-253 100-124 (1265)
306 PF03234 CDC37_N: Cdc37 N term 49.8 1.2E+02 0.0027 27.5 8.7 29 254-282 45-73 (177)
307 PF15556 Zwint: ZW10 interacto 49.6 2.4E+02 0.0052 26.9 10.9 66 234-306 113-178 (252)
308 PLN02939 transferase, transfer 49.5 1.3E+02 0.0027 34.3 10.3 26 281-306 224-249 (977)
309 PRK03992 proteasome-activating 49.5 57 0.0012 32.4 7.1 40 257-296 10-49 (389)
310 PF08606 Prp19: Prp19/Pso4-lik 49.4 39 0.00085 26.7 4.7 32 257-288 10-41 (70)
311 COG2919 Septum formation initi 49.2 1.6E+02 0.0034 24.7 9.9 14 235-248 22-35 (117)
312 COG1382 GimC Prefoldin, chaper 48.9 70 0.0015 27.6 6.6 39 252-290 67-105 (119)
313 PF07989 Microtub_assoc: Micro 48.8 1.1E+02 0.0024 24.0 7.2 38 270-307 37-74 (75)
314 PTZ00454 26S protease regulato 48.3 60 0.0013 32.7 7.0 43 261-303 21-63 (398)
315 PRK14127 cell division protein 48.2 53 0.0011 27.8 5.6 39 255-293 30-68 (109)
316 PRK11546 zraP zinc resistance 48.2 92 0.002 27.6 7.4 22 283-304 89-110 (143)
317 PF07047 OPA3: Optic atrophy 3 48.1 40 0.00086 28.9 5.0 37 232-274 95-131 (134)
318 PF13094 CENP-Q: CENP-Q, a CEN 48.0 1E+02 0.0022 26.7 7.7 44 255-298 41-84 (160)
319 PF06698 DUF1192: Protein of u 47.8 67 0.0014 24.5 5.6 25 257-281 23-47 (59)
320 PF07200 Mod_r: Modifier of ru 47.6 1.7E+02 0.0038 24.7 9.1 49 241-289 34-82 (150)
321 PF07889 DUF1664: Protein of u 47.6 1.9E+02 0.0041 25.1 9.9 52 255-306 68-119 (126)
322 PRK10361 DNA recombination pro 47.5 2.8E+02 0.006 29.1 11.8 18 263-280 68-85 (475)
323 PF04136 Sec34: Sec34-like fam 47.5 1.3E+02 0.0028 26.5 8.3 53 255-307 21-73 (157)
324 KOG0243 Kinesin-like protein [ 47.4 1.7E+02 0.0038 33.5 10.9 35 273-307 480-514 (1041)
325 PF14817 HAUS5: HAUS augmin-li 47.3 1.1E+02 0.0025 32.9 9.3 42 253-294 98-139 (632)
326 PF10883 DUF2681: Protein of u 47.3 81 0.0018 25.8 6.4 38 264-301 25-64 (87)
327 PF10481 CENP-F_N: Cenp-F N-te 47.2 1.5E+02 0.0033 29.2 9.3 77 231-307 15-119 (307)
328 PF10168 Nup88: Nuclear pore c 47.2 2.2E+02 0.0047 31.2 11.4 36 269-304 586-621 (717)
329 PRK10722 hypothetical protein; 47.2 1.4E+02 0.0031 28.7 9.0 63 231-295 141-209 (247)
330 PF00261 Tropomyosin: Tropomyo 47.0 2.4E+02 0.0051 26.1 11.9 48 257-304 171-218 (237)
331 PRK05892 nucleoside diphosphat 46.9 1.1E+02 0.0025 26.9 7.9 52 256-307 12-71 (158)
332 PF13935 Ead_Ea22: Ead/Ea22-li 46.8 1.8E+02 0.0038 25.0 8.8 22 257-278 92-113 (139)
333 KOG3650 Predicted coiled-coil 46.6 58 0.0013 27.6 5.6 43 253-295 68-110 (120)
334 KOG1029 Endocytic adaptor prot 46.6 1.9E+02 0.0042 32.6 10.8 22 282-303 436-457 (1118)
335 TIGR03185 DNA_S_dndD DNA sulfu 46.6 1.2E+02 0.0026 32.2 9.2 7 114-120 67-73 (650)
336 KOG0161 Myosin class II heavy 46.3 2E+02 0.0044 35.1 11.8 22 284-305 1513-1534(1930)
337 PLN02678 seryl-tRNA synthetase 46.2 1.9E+02 0.004 30.0 10.3 7 237-243 19-25 (448)
338 PF06810 Phage_GP20: Phage min 46.1 1.3E+02 0.0029 26.5 8.2 14 291-304 52-65 (155)
339 PRK05431 seryl-tRNA synthetase 45.9 2E+02 0.0043 29.2 10.4 18 288-305 71-88 (425)
340 PRK04863 mukB cell division pr 45.9 2.2E+02 0.0048 33.9 11.9 32 258-289 358-389 (1486)
341 PF06632 XRCC4: DNA double-str 45.8 90 0.0019 31.2 7.7 14 109-122 61-74 (342)
342 PF04999 FtsL: Cell division p 45.6 1.4E+02 0.003 23.6 7.6 25 257-281 44-68 (97)
343 KOG0995 Centromere-associated 45.5 1.6E+02 0.0036 31.5 9.9 50 257-306 275-324 (581)
344 PF12808 Mto2_bdg: Micro-tubul 45.4 44 0.00095 24.9 4.2 25 258-282 25-49 (52)
345 KOG0982 Centrosomal protein Nu 45.3 82 0.0018 32.8 7.5 26 280-305 301-326 (502)
346 PF06424 PRP1_N: PRP1 splicing 45.2 15 0.00032 32.1 2.0 40 252-291 80-119 (133)
347 PF14257 DUF4349: Domain of un 45.2 1.3E+02 0.0029 27.9 8.4 29 253-281 160-188 (262)
348 PF06419 COG6: Conserved oligo 44.9 2.1E+02 0.0045 30.6 10.7 53 255-307 45-97 (618)
349 TIGR01010 BexC_CtrB_KpsE polys 44.7 1.9E+02 0.0041 28.1 9.7 12 110-121 65-76 (362)
350 PF08781 DP: Transcription fac 44.7 1.3E+02 0.0029 26.6 7.8 19 250-268 17-35 (142)
351 TIGR00606 rad50 rad50. This fa 44.7 2.3E+02 0.005 32.8 11.7 52 255-306 1028-1091(1311)
352 KOG0249 LAR-interacting protei 44.6 2.1E+02 0.0046 31.8 10.7 42 263-304 217-258 (916)
353 PF04949 Transcrip_act: Transc 44.6 79 0.0017 28.5 6.4 55 230-284 40-99 (159)
354 PF03961 DUF342: Protein of un 44.5 1E+02 0.0022 31.2 8.0 32 275-306 374-405 (451)
355 PF10146 zf-C4H2: Zinc finger- 44.4 2.8E+02 0.0061 26.2 11.3 52 254-305 49-103 (230)
356 PF09325 Vps5: Vps5 C terminal 44.4 2.3E+02 0.005 25.2 9.9 70 236-305 123-192 (236)
357 PF07767 Nop53: Nop53 (60S rib 44.4 1.4E+02 0.0031 29.6 8.9 38 230-267 272-309 (387)
358 PF10883 DUF2681: Protein of u 44.4 55 0.0012 26.7 5.0 22 261-282 29-50 (87)
359 PF13874 Nup54: Nucleoporin co 44.4 2E+02 0.0044 24.6 9.5 50 257-306 67-123 (141)
360 PF05531 NPV_P10: Nucleopolyhe 44.4 1.3E+02 0.0028 24.0 6.9 52 255-306 11-65 (75)
361 PF06210 DUF1003: Protein of u 44.4 1.5E+02 0.0033 24.8 7.8 52 239-295 55-106 (108)
362 PRK09413 IS2 repressor TnpA; R 44.3 60 0.0013 26.9 5.4 12 288-299 90-101 (121)
363 PHA02675 ORF104 fusion protein 43.7 1.8E+02 0.0039 23.9 7.8 20 287-306 62-81 (90)
364 PF10205 KLRAQ: Predicted coil 43.6 2E+02 0.0043 24.2 8.6 44 263-306 27-70 (102)
365 PRK10361 DNA recombination pro 43.6 3.2E+02 0.0069 28.7 11.5 8 295-302 111-118 (475)
366 PF02388 FemAB: FemAB family; 43.5 80 0.0017 31.6 7.1 26 254-279 241-266 (406)
367 PF10174 Cast: RIM-binding pro 43.2 2.7E+02 0.0058 31.0 11.4 54 253-306 355-408 (775)
368 PLN03188 kinesin-12 family pro 42.9 98 0.0021 36.1 8.3 53 255-307 1155-1242(1320)
369 KOG1319 bHLHZip transcription 42.8 2.5E+02 0.0055 26.4 9.6 24 280-303 116-139 (229)
370 COG1340 Uncharacterized archae 42.8 2.4E+02 0.0051 27.9 9.9 47 258-304 30-76 (294)
371 PRK14143 heat shock protein Gr 42.8 83 0.0018 29.9 6.7 21 258-278 84-104 (238)
372 cd07429 Cby_like Chibby, a nuc 42.7 57 0.0012 27.7 5.0 25 258-282 75-99 (108)
373 PF13942 Lipoprotein_20: YfhG 42.6 2.2E+02 0.0047 26.3 9.0 50 244-295 114-163 (179)
374 PRK13923 putative spore coat p 42.4 75 0.0016 28.9 6.1 43 254-296 110-155 (170)
375 PF09602 PhaP_Bmeg: Polyhydrox 42.4 2.6E+02 0.0056 25.5 9.4 39 246-284 25-70 (165)
376 PF02994 Transposase_22: L1 tr 42.3 1E+02 0.0023 30.7 7.7 50 258-307 140-189 (370)
377 KOG0239 Kinesin (KAR3 subfamil 42.3 2.2E+02 0.0048 31.0 10.5 49 257-305 243-291 (670)
378 PF04728 LPP: Lipoprotein leuc 42.1 1.5E+02 0.0033 22.4 7.7 38 257-297 12-49 (56)
379 PRK14872 rod shape-determining 42.0 78 0.0017 31.7 6.6 39 256-298 58-96 (337)
380 PF04568 IATP: Mitochondrial A 41.9 1.6E+02 0.0035 24.5 7.5 45 240-284 54-98 (100)
381 TIGR01554 major_cap_HK97 phage 41.8 1.8E+02 0.0039 28.5 9.2 24 257-280 36-59 (378)
382 COG3352 FlaC Putative archaeal 41.8 1.2E+02 0.0027 27.3 7.2 52 255-306 79-131 (157)
383 PF13870 DUF4201: Domain of un 41.7 2E+02 0.0043 25.3 8.6 7 296-302 158-164 (177)
384 KOG3564 GTPase-activating prot 41.4 1.5E+02 0.0033 31.5 8.8 80 225-307 22-101 (604)
385 KOG0933 Structural maintenance 41.4 2.7E+02 0.0059 32.1 11.1 48 255-302 815-862 (1174)
386 TIGR00414 serS seryl-tRNA synt 41.4 98 0.0021 31.3 7.4 19 281-299 81-99 (418)
387 PF04012 PspA_IM30: PspA/IM30 41.3 2.7E+02 0.0058 25.1 10.7 41 255-295 105-145 (221)
388 PRK10636 putative ABC transpor 41.2 1.5E+02 0.0033 31.3 9.1 50 255-304 563-619 (638)
389 PHA03162 hypothetical protein; 41.1 35 0.00076 30.0 3.6 22 278-299 15-36 (135)
390 PF14916 CCDC92: Coiled-coil d 41.0 61 0.0013 24.8 4.5 20 255-274 3-22 (60)
391 PF05622 HOOK: HOOK protein; 40.9 9 0.0002 41.0 0.0 55 251-305 321-378 (713)
392 PF05008 V-SNARE: Vesicle tran 40.9 1.3E+02 0.0029 22.7 6.5 20 255-274 32-51 (79)
393 KOG2391 Vacuolar sorting prote 40.8 2.5E+02 0.0054 28.5 9.8 53 254-306 224-276 (365)
394 PF10046 BLOC1_2: Biogenesis o 40.8 2E+02 0.0042 23.4 10.2 65 242-307 30-97 (99)
395 PRK10920 putative uroporphyrin 40.7 2.3E+02 0.0049 28.9 9.8 27 263-289 100-126 (390)
396 KOG0978 E3 ubiquitin ligase in 40.7 1.8E+02 0.004 31.9 9.6 59 245-303 563-621 (698)
397 PF04871 Uso1_p115_C: Uso1 / p 40.6 2.4E+02 0.0052 24.3 11.1 19 257-275 57-75 (136)
398 PF15136 UPF0449: Uncharacteri 40.6 1.6E+02 0.0035 24.6 7.3 39 263-301 58-96 (97)
399 PHA03155 hypothetical protein; 40.6 37 0.00081 29.1 3.6 21 279-299 11-31 (115)
400 PHA03161 hypothetical protein; 40.5 2.7E+02 0.0059 25.0 9.3 26 258-283 57-82 (150)
401 PF15556 Zwint: ZW10 interacto 40.3 3.4E+02 0.0073 25.9 10.7 34 273-306 138-171 (252)
402 PF12777 MT: Microtubule-bindi 40.3 60 0.0013 31.7 5.6 37 246-282 233-269 (344)
403 KOG4797 Transcriptional regula 40.1 63 0.0014 27.8 4.9 21 255-275 74-94 (123)
404 cd07666 BAR_SNX7 The Bin/Amphi 40.1 1.8E+02 0.0039 27.7 8.5 56 237-302 152-207 (243)
405 PF09766 FimP: Fms-interacting 40.1 1.5E+02 0.0031 29.5 8.2 49 249-297 102-150 (355)
406 PF08961 DUF1875: Domain of un 39.9 9.6 0.00021 36.2 0.0 41 255-295 122-162 (243)
407 PRK11147 ABC transporter ATPas 39.8 1.1E+02 0.0024 32.2 7.8 48 257-304 570-623 (635)
408 KOG4001 Axonemal dynein light 39.8 1.5E+02 0.0033 28.2 7.8 20 283-302 235-254 (259)
409 PRK14011 prefoldin subunit alp 39.6 1.7E+02 0.0036 25.8 7.6 8 295-302 125-132 (144)
410 PF03962 Mnd1: Mnd1 family; I 39.5 1.8E+02 0.0039 26.4 8.1 18 283-300 110-127 (188)
411 PF12999 PRKCSH-like: Glucosid 39.4 2.6E+02 0.0057 25.6 9.1 36 247-282 138-173 (176)
412 KOG4807 F-actin binding protei 39.3 1.6E+02 0.0034 30.7 8.4 53 252-304 390-456 (593)
413 PF14282 FlxA: FlxA-like prote 39.2 1.2E+02 0.0025 25.1 6.3 11 258-268 29-39 (106)
414 PF07407 Seadorna_VP6: Seadorn 39.1 43 0.00092 33.8 4.3 31 256-286 33-63 (420)
415 PF10241 KxDL: Uncharacterized 39.0 2E+02 0.0043 22.9 9.3 53 255-307 22-74 (88)
416 PF14712 Snapin_Pallidin: Snap 38.8 1.9E+02 0.004 22.6 7.3 30 257-286 16-45 (92)
417 TIGR02231 conserved hypothetic 38.7 4.2E+02 0.009 27.3 11.6 45 259-303 128-172 (525)
418 PF12999 PRKCSH-like: Glucosid 38.5 1.8E+02 0.0038 26.7 7.9 20 284-303 154-173 (176)
419 PF08912 Rho_Binding: Rho Bind 38.5 1.4E+02 0.0031 23.5 6.3 33 260-292 1-33 (69)
420 KOG4674 Uncharacterized conser 38.5 1.4E+02 0.0031 36.1 8.9 59 247-305 1235-1293(1822)
421 KOG4807 F-actin binding protei 38.4 1.6E+02 0.0034 30.8 8.2 50 254-303 417-476 (593)
422 PRK11239 hypothetical protein; 38.3 56 0.0012 30.8 4.7 29 257-285 185-213 (215)
423 TIGR00606 rad50 rad50. This fa 38.0 3.3E+02 0.0073 31.5 11.7 64 241-304 843-909 (1311)
424 cd07429 Cby_like Chibby, a nuc 37.9 74 0.0016 27.0 5.0 26 256-281 80-105 (108)
425 PF09486 HrpB7: Bacterial type 37.9 2.2E+02 0.0048 25.5 8.3 48 255-302 79-126 (158)
426 COG4372 Uncharacterized protei 37.7 3.3E+02 0.0071 28.4 10.3 42 255-296 137-178 (499)
427 KOG0161 Myosin class II heavy 37.7 2.4E+02 0.0052 34.6 10.6 65 239-303 1644-1708(1930)
428 TIGR01461 greB transcription e 37.5 1.4E+02 0.003 26.3 6.9 25 283-307 45-69 (156)
429 TIGR03007 pepcterm_ChnLen poly 37.5 3E+02 0.0064 27.8 10.1 52 255-306 175-234 (498)
430 TIGR00219 mreC rod shape-deter 37.3 2.1E+02 0.0047 27.4 8.7 6 269-274 98-103 (283)
431 KOG0996 Structural maintenance 37.2 3.3E+02 0.0072 31.9 11.1 16 32-47 159-174 (1293)
432 COG1382 GimC Prefoldin, chaper 36.8 1E+02 0.0022 26.5 5.7 37 255-291 77-113 (119)
433 PF05278 PEARLI-4: Arabidopsis 36.8 4.1E+02 0.009 25.9 11.5 50 256-305 201-250 (269)
434 KOG1937 Uncharacterized conser 36.8 3.1E+02 0.0068 28.9 10.1 70 231-300 409-519 (521)
435 PF11853 DUF3373: Protein of u 36.7 29 0.00063 36.3 2.9 24 256-279 32-55 (489)
436 KOG0964 Structural maintenance 36.6 3.3E+02 0.0071 31.5 10.8 53 250-302 413-465 (1200)
437 KOG4643 Uncharacterized coiled 36.5 3.1E+02 0.0067 31.7 10.6 71 233-303 372-456 (1195)
438 PF03961 DUF342: Protein of un 36.5 1.9E+02 0.0042 29.2 8.7 33 270-302 376-408 (451)
439 PF08248 Tryp_FSAP: Tryptophyl 36.4 17 0.00037 19.6 0.6 7 12-18 2-8 (12)
440 KOG2751 Beclin-like protein [S 36.3 3.3E+02 0.0072 28.4 10.2 60 246-305 155-219 (447)
441 COG1729 Uncharacterized protei 36.2 91 0.002 30.1 5.9 28 257-285 58-85 (262)
442 smart00340 HALZ homeobox assoc 36.0 87 0.0019 22.7 4.3 25 258-282 8-32 (44)
443 PF04375 HemX: HemX; InterPro 36.0 2.1E+02 0.0045 28.5 8.6 45 258-302 89-135 (372)
444 smart00787 Spc7 Spc7 kinetocho 35.8 4.4E+02 0.0094 25.9 11.3 7 39-45 12-18 (312)
445 PF14915 CCDC144C: CCDC144C pr 35.7 4.6E+02 0.0099 26.1 10.9 28 258-285 217-244 (305)
446 KOG2010 Double stranded RNA bi 35.6 2.2E+02 0.0047 29.0 8.5 68 231-301 124-200 (405)
447 PF13874 Nup54: Nucleoporin co 35.6 2.8E+02 0.0062 23.7 8.7 10 258-267 54-63 (141)
448 KOG2260 Cell division cycle 37 35.4 4E+02 0.0087 27.2 10.4 58 251-308 43-114 (372)
449 PF07544 Med9: RNA polymerase 35.4 1.7E+02 0.0036 23.2 6.4 23 283-305 59-81 (83)
450 KOG0976 Rho/Rac1-interacting s 35.3 1.7E+02 0.0036 33.2 8.2 50 254-303 105-154 (1265)
451 PF07111 HCR: Alpha helical co 35.2 4.6E+02 0.0099 29.1 11.4 53 248-300 507-566 (739)
452 PF04420 CHD5: CHD5-like prote 35.2 98 0.0021 27.3 5.6 14 259-272 44-57 (161)
453 PF09403 FadA: Adhesion protei 35.2 2.7E+02 0.0059 24.1 8.1 64 235-300 34-106 (126)
454 COG4985 ABC-type phosphate tra 35.2 1.8E+02 0.004 28.2 7.7 8 136-143 110-117 (289)
455 PF14645 Chibby: Chibby family 35.1 1.9E+02 0.004 24.6 7.0 43 257-299 73-115 (116)
456 KOG4001 Axonemal dynein light 35.1 2.9E+02 0.0063 26.4 8.8 55 243-297 169-227 (259)
457 PRK15396 murein lipoprotein; P 35.0 2.3E+02 0.0051 22.6 8.2 43 256-298 26-68 (78)
458 KOG0483 Transcription factor H 34.9 53 0.0012 30.4 4.0 39 268-306 104-142 (198)
459 PF05557 MAD: Mitotic checkpoi 34.8 1.8E+02 0.0038 31.4 8.4 49 254-302 509-585 (722)
460 PF01763 Herpes_UL6: Herpesvir 34.8 1.4E+02 0.003 31.9 7.5 44 255-298 363-406 (557)
461 PF13166 AAA_13: AAA domain 34.8 4.6E+02 0.0099 27.7 11.4 50 257-306 405-454 (712)
462 PF10359 Fmp27_WPPW: RNA pol I 34.6 94 0.002 32.0 6.1 11 234-244 162-172 (475)
463 KOG1691 emp24/gp25L/p24 family 34.5 1.2E+02 0.0026 28.5 6.3 51 252-302 131-181 (210)
464 COG3937 Uncharacterized conser 34.4 2.4E+02 0.0053 24.0 7.5 23 286-308 86-108 (108)
465 PF06428 Sec2p: GDP/GTP exchan 34.4 2.1E+02 0.0046 23.7 7.1 49 258-306 11-60 (100)
466 TIGR01005 eps_transp_fam exopo 34.2 2.4E+02 0.0052 30.2 9.3 75 233-307 236-333 (754)
467 PF13870 DUF4201: Domain of un 34.0 3E+02 0.0065 24.1 8.5 42 263-304 92-133 (177)
468 KOG0996 Structural maintenance 33.8 4E+02 0.0086 31.3 11.1 55 249-303 536-590 (1293)
469 KOG0612 Rho-associated, coiled 33.8 4.3E+02 0.0094 31.1 11.4 77 230-306 464-548 (1317)
470 TIGR03545 conserved hypothetic 33.8 1.5E+02 0.0032 31.5 7.5 28 243-270 179-206 (555)
471 TIGR03185 DNA_S_dndD DNA sulfu 33.7 5.3E+02 0.011 27.4 11.7 77 231-307 394-473 (650)
472 PF10212 TTKRSYEDQ: Predicted 33.7 2.1E+02 0.0046 30.4 8.5 52 255-306 427-478 (518)
473 KOG2991 Splicing regulator [RN 33.6 1.2E+02 0.0027 29.8 6.3 52 256-307 237-288 (330)
474 PF11382 DUF3186: Protein of u 33.5 1.3E+02 0.0029 29.1 6.7 43 257-299 34-76 (308)
475 TIGR03495 phage_LysB phage lys 33.3 3.3E+02 0.0072 23.8 8.5 53 254-306 25-77 (135)
476 KOG4674 Uncharacterized conser 33.3 2.2E+02 0.0047 34.7 9.3 63 246-308 431-493 (1822)
477 PF13805 Pil1: Eisosome compon 33.1 1.1E+02 0.0024 29.7 6.0 52 234-285 144-195 (271)
478 PRK11546 zraP zinc resistance 33.0 2.1E+02 0.0046 25.3 7.2 53 254-306 46-105 (143)
479 PF09311 Rab5-bind: Rabaptin-l 32.8 17 0.00036 32.6 0.3 51 258-308 25-75 (181)
480 TIGR01843 type_I_hlyD type I s 32.6 4.6E+02 0.0099 25.2 11.9 74 233-306 143-226 (423)
481 PF02646 RmuC: RmuC family; I 32.6 2.1E+02 0.0046 27.6 7.9 51 254-307 12-65 (304)
482 PF06632 XRCC4: DNA double-str 32.5 2.9E+02 0.0063 27.7 8.9 53 254-306 129-181 (342)
483 PF10498 IFT57: Intra-flagella 32.4 5.3E+02 0.012 25.9 11.6 74 231-306 237-310 (359)
484 PRK05771 V-type ATP synthase s 32.3 2.2E+02 0.0048 30.2 8.6 55 254-308 214-269 (646)
485 PRK14158 heat shock protein Gr 32.3 1.6E+02 0.0035 27.2 6.7 49 259-307 37-85 (194)
486 PF10779 XhlA: Haemolysin XhlA 32.1 2.3E+02 0.0049 21.6 7.0 51 257-307 1-51 (71)
487 KOG2264 Exostosin EXT1L [Signa 32.0 5.3E+02 0.012 28.3 11.1 74 232-305 77-150 (907)
488 PF05600 DUF773: Protein of un 31.9 2.1E+02 0.0045 30.0 8.2 54 254-307 431-484 (507)
489 KOG2129 Uncharacterized conser 31.9 1.9E+02 0.004 30.4 7.5 51 254-307 252-302 (552)
490 TIGR01069 mutS2 MutS2 family p 31.8 2.9E+02 0.0063 30.4 9.6 59 247-305 500-558 (771)
491 KOG2483 Upstream transcription 31.7 87 0.0019 29.8 4.9 33 271-303 107-139 (232)
492 PF14362 DUF4407: Domain of un 31.7 4.5E+02 0.0098 24.9 10.3 78 229-306 107-198 (301)
493 TIGR01005 eps_transp_fam exopo 31.7 5.4E+02 0.012 27.6 11.5 72 236-307 182-268 (754)
494 PF05557 MAD: Mitotic checkpoi 31.7 2.5E+02 0.0054 30.3 8.9 53 254-306 502-582 (722)
495 PF11690 DUF3287: Protein of u 31.5 1.3E+02 0.0028 25.6 5.5 43 249-291 34-80 (109)
496 PRK09413 IS2 repressor TnpA; R 31.4 1.3E+02 0.0027 25.0 5.4 38 257-294 73-110 (121)
497 TIGR01000 bacteriocin_acc bact 31.4 5.1E+02 0.011 26.1 10.7 74 233-306 220-307 (457)
498 PF15290 Syntaphilin: Golgi-lo 31.2 2.7E+02 0.0059 27.6 8.3 53 254-306 74-140 (305)
499 PF07246 Phlebovirus_NSM: Phle 31.0 2.7E+02 0.0058 27.1 8.2 67 233-299 173-239 (264)
500 PRK13923 putative spore coat p 31.0 1.4E+02 0.003 27.3 5.9 36 267-302 109-144 (170)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.36 E-value=5e-12 Score=94.93 Aligned_cols=61 Identities=41% Similarity=0.566 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~EN 292 (308)
++|+.+|+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999998777777666655
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.34 E-value=6.5e-12 Score=94.13 Aligned_cols=61 Identities=39% Similarity=0.571 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~EN 292 (308)
+.|+.+|+++||+||+++|.||++|+.+|+.+|..|+.+|..|..++..|..++..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999999999999999999999999999999999999999999888887
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.26 E-value=3.8e-11 Score=111.80 Aligned_cols=75 Identities=28% Similarity=0.396 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
|+|-+||+++||++|+-+|.|||++++++|.+|..|..||..|..++..|+.+...|.++|..|...++.|++.|
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999888754
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.26 E-value=1e-11 Score=125.72 Aligned_cols=70 Identities=36% Similarity=0.424 Sum_probs=67.4
Q ss_pred cCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 227 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (308)
Q Consensus 227 ~~d~~e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lr 296 (308)
.+|++--||+.|||+|||||..||+|||+|+..||.+++.|..||..|++++..|++++..+..||..||
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 4678889999999999999999999999999999999999999999999999999999999999999986
No 5
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.13 E-value=6.6e-11 Score=118.25 Aligned_cols=72 Identities=32% Similarity=0.422 Sum_probs=66.2
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 021757 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKFF 308 (308)
Q Consensus 230 ~~e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvkm 308 (308)
++..||.||+|+|.+|||.||+|||.|++.||.+|.....||++|.+++. .|+.+|+.|-+++..|+++|.+
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~-------~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE-------ELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH-------HHhhccHHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999987776 6889999999999999998864
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.11 E-value=1.3e-10 Score=110.80 Aligned_cols=60 Identities=28% Similarity=0.491 Sum_probs=55.2
Q ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 228 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (308)
Q Consensus 228 ~d~~e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~ 287 (308)
.++.-.||+-|++||||+||.+|+|||+|+++||.+|.-|+.+|..|..+|..|++-|..
T Consensus 285 aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 285 AEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 455678999999999999999999999999999999999999999999999999887754
No 7
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.03 E-value=1.8e-09 Score=78.78 Aligned_cols=51 Identities=39% Similarity=0.629 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~q 283 (308)
+.++.||+ +||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888 9999999999999999999999999999999999998887764
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.09 E-value=4.8e-08 Score=78.44 Aligned_cols=63 Identities=35% Similarity=0.450 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr 293 (308)
.+.|..||.++||.+|+.||.||..++.+||.++..|+.+...|..++..+..++..+...+.
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~ 89 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLE 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999888877777777766655544443333
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.98 E-value=2.6e-05 Score=74.00 Aligned_cols=56 Identities=27% Similarity=0.447 Sum_probs=46.8
Q ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (308)
Q Consensus 232 e~KR~RR-~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~ 287 (308)
+..|..| .++||+.|.+||.||.+||..||.+|..|..+|..|-..+..|+++...
T Consensus 203 e~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e 259 (279)
T KOG0837|consen 203 EKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAE 259 (279)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4444444 7899999999999999999999999999999999998888766555443
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.26 E-value=0.0047 Score=59.66 Aligned_cols=66 Identities=24% Similarity=0.263 Sum_probs=50.0
Q ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 232 e~KR~RR-~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
..|+.|| .+.|..+|-|-|.||++..++|+.++..|+.+|.+|+.++.. ++.|=+.||+=|...+.
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~-------lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASE-------LEREIRYLKQLILEVYK 290 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3455555 445666799999999999999999999999999999888875 55555666666555443
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.18 E-value=0.0038 Score=54.08 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
-.|..||-|+||=.|+-+|-|+.+.-.+||.+-..|..+...|..++..+.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999988877777665555555544444444333
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.80 E-value=0.0059 Score=58.03 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=43.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (308)
Q Consensus 238 R~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l 288 (308)
|.-+|=+++||||.+.+....++..+|..|+.||..|+.++..|++++..+
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334588999999999999999999999999999999999988665555444
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.46 E-value=0.0058 Score=64.03 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=51.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 235 R~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
=.||.=|||.+|+++|+||..-|..||..|..|+.|-.+|+++-. .+...=.++++++..|-..|
T Consensus 491 DIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~-------~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 491 DIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD-------ELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred ccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999998888876654 34455556677777766544
No 14
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.15 E-value=0.023 Score=40.74 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 021757 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKFF 308 (308)
Q Consensus 266 ~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvkm 308 (308)
+|+.+...|+.....|...|..|..||..|++++..|..++.+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5778888889999999999999999999999999999998864
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.73 E-value=0.093 Score=41.05 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK-------YDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk-------~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+-++.||.+|..+-..+..|..++..|+++ ...|..+|..|+.+-...+.+|
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777766555555555555555555 5555555555555544444443
No 16
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.69 E-value=0.086 Score=40.72 Aligned_cols=50 Identities=18% Similarity=0.040 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
|..|+.+|..|-.....|..++..|.++...+..|++.|..+++.-|.||
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665555555555555555555566666666655555555444
No 17
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.34 E-value=0.098 Score=43.75 Aligned_cols=50 Identities=30% Similarity=0.414 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
..+..||.++..|-.+...|+.++..|-++...|..||..||..+..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45777888888888888888888888888888888888888877777654
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.23 E-value=0.11 Score=43.85 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
..+..||+++..|-.+...|+..+..|-++...|..||..||..+..+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577888888888888888888888888888888888888888888763
No 19
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.87 E-value=0.15 Score=42.70 Aligned_cols=49 Identities=27% Similarity=0.325 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 259 eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+|=.++..|+.....|..++..|+.+...+..||..|+.+...||.+|.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999999999874
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.79 E-value=0.39 Score=44.29 Aligned_cols=51 Identities=6% Similarity=0.048 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
++..+|+.++..+..+...|..++..|++++..+..+|+.|++++..++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444555555555555555443
No 21
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.76 E-value=0.084 Score=54.25 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
..+++||.+++.|+.|.+.|.+++..+++++..++.||+.|+.+++.+..+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 467899999999999999999999999999999999999999999876653
No 22
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.60 E-value=0.29 Score=38.28 Aligned_cols=52 Identities=10% Similarity=0.212 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..+.-|+.++..|+.+|..|..+...|.++...+..+-...+.+|..|=.|+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4466677777788888777777788888888888877777777777765554
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=0.2 Score=39.60 Aligned_cols=51 Identities=14% Similarity=0.254 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
-+.=|.-+|+.|+.+|+.|..+...+++....|..+|..|+.+-...+.++
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788999999999999999999999999999999999887777665
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.56 E-value=0.33 Score=37.53 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+.++.|=..+..|+.||..|+.++..+..+...|...|..=+.+|++|=.++|
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46788889999999999999999999999999999999999999999988875
No 25
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.17 E-value=1.2 Score=40.05 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
...++.+.+...+..-+.-.......|.+++.-+..|..|...|..++..+.+++..+..||+.|-.+.....
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777778899999999999999999999999999999999999999987766543
No 26
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.10 E-value=0.27 Score=41.43 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.+|=.++..|+.....|..++..|++....+..||..|+.+-..||.++.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999999999999999999999999999999999998874
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.99 E-value=0.63 Score=42.98 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 249 SR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
.....++.+..++.++..|+.+|+.|..++..++.+...+..+|..++.++.
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466677888889999999999999999999999999999999987653
No 28
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=93.74 E-value=0.36 Score=40.94 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 261 E~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
=.+|..|+.....|.+++..|++++..+..||..|+-+.+.||.++
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 3455566666666677777777777777777777777777777765
No 29
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.55 E-value=0.39 Score=43.13 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 263 qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
....++.||..|..++..|++++..|..||..|..++..+..
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777777777777777666655543
No 30
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.54 E-value=0.59 Score=36.26 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
.++.-|..++...+.+|..|..+-.....++..+-.+|..|+.+++.|+..
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666555555555555555555555555555543
No 31
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=93.26 E-value=0.46 Score=37.35 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHh
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD--------ESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~--------~l~~ENr~Lra~l~~Lrakv 306 (308)
|.+++.+++.|+.||=.|+-++-.|.+++. .+..+|-.|+.+++.|+..|
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el 59 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKREL 59 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999888888877776 34677778888887777655
No 32
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.12 E-value=0.52 Score=37.81 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+.=|.-+|+.|+.+|..|..++..+......|..+|..||.+-...+.+|
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666778889999998888777766
No 33
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=92.59 E-value=0.93 Score=36.32 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
++|..++..|+.....|..++..++..+..|..||..|..=|..|-+.
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888999999999999999999999999999999999888543
No 34
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.92 E-value=0.95 Score=34.72 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
++|.+||.++..++.-...|...+..-++++..|..+-+.|..++..++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67899999999999999999999999999999999999999888888763
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.03 E-value=4.5 Score=34.71 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=37.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 234 KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
.+..|=...|+..-....++..-+..|+..+..|+.++..+..++..+..+...+..+++.+...+.
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666655555555555554444444443333
No 36
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=90.92 E-value=5.1 Score=32.40 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
-.+|..+.+.+=+++=..|.-+.....+|+.++..|....+.|-.+|.....++..|+.-|+.+...+...-..|
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888789999999999999999999999999999999999999888876655443
No 37
>PRK11637 AmiB activator; Provisional
Probab=90.23 E-value=3.9 Score=40.83 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..-...+..|+.++..++.+...+..++..+++++..+..+=..++.++..++..+
T Consensus 71 ~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666666666666655555555555555443
No 38
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.17 E-value=1.3 Score=37.63 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
..+.+||.++..|-.+...|++.+..+-++...|..||..||.++..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 35789999999999999999999999999999999999999998865
No 39
>smart00340 HALZ homeobox associated leucin zipper.
Probab=89.86 E-value=0.66 Score=33.28 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 279 TDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
+.|++.+..|..||+.|+.+++.||+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457778889999999999999999963
No 40
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=89.62 E-value=0.79 Score=43.92 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 021757 263 QAGQLRAEHSSLLKGLTDVNQKYD----ESAVNNRILKADI 299 (308)
Q Consensus 263 qV~~Le~EN~~L~~el~~L~qk~~----~l~~ENr~Lra~l 299 (308)
.+.+|+.||..|++++..|++++. .+..||+.||+-+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777777777666544433 3777777777644
No 41
>PRK02119 hypothetical protein; Provisional
Probab=89.59 E-value=2.4 Score=33.11 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
.+++.+||.++..++.-...|...+..-++++..|..+-+.|..++..+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788899999999888888888888888888888888888877777665
No 42
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=89.47 E-value=4.2 Score=39.08 Aligned_cols=77 Identities=14% Similarity=0.267 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhhHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 231 VDDKRARRMLSNRESA--RRSRRRKQA-HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 231 ~e~KR~RR~lsNReSA--rRSR~RKk~-~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.+.||.|-.+.---+- ++.|.-+.+ .+.+|+.+-..|+.||..|+.....|-.+.+++..+=..|++++..|.....
T Consensus 70 ~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 70 VQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 4667777444321111 222333433 4789999999999999999999999999999999999999999998877643
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.45 E-value=4.4 Score=42.71 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=46.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 234 KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
|....+++...........-+.++..|+.++...+.++..|..+...+......+..|+..|+.+...++.++
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555666666666666677777777777777777776666666666666666666666666665554
No 44
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.37 E-value=2.6 Score=32.69 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
++.-.+.....|..|+.....++...-..+..|..||..|+.++..++.+
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44556677888999999999999999999999999999999999888753
No 45
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.01 E-value=4.2 Score=34.41 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (308)
Q Consensus 235 R~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ 290 (308)
+..-+..-.|..+-|+..=...-++|+..+..|+.++..+.+++.+|+.++..+..
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666776766655555667777777777777777777777666665543
No 46
>PRK02119 hypothetical protein; Provisional
Probab=88.58 E-value=3.4 Score=32.27 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.+..++.++..|+.....+-..+..|+.-...-..+-..|+.++..|..+++
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999988888888999999999988774
No 47
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=88.56 E-value=2 Score=44.41 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~ 286 (308)
.+..|..+-+.|..||+.|+++...+.++.+
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3466777777777777777765554444433
No 48
>PRK04406 hypothetical protein; Provisional
Probab=88.56 E-value=3.7 Score=32.31 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
++|.+||.++..++.-...|...+..-++++..|..+=+.|..++..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677777777777777777777777766666666666666666555543
No 49
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.28 E-value=11 Score=34.50 Aligned_cols=58 Identities=29% Similarity=0.379 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
+....++.+.+-+.-+.+=..-+.++..++.++..|+.++..|..++..+.++...|.
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777776666777777777788777777777777776666555554
No 50
>PRK11637 AmiB activator; Provisional
Probab=88.12 E-value=6.9 Score=39.11 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.+......+..+.+++.++..|..+...+..++..+++++..+..+=..|..+|..++.++
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445566667777777777777777777777777777777777777777776665
No 51
>PRK00295 hypothetical protein; Provisional
Probab=87.85 E-value=4.5 Score=31.12 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
++|.+||.++..++.-...|...+..-++++..|..+=+.|..++..+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4589999999999999999988888888888777777777777776654
No 52
>PRK02793 phi X174 lysis protein; Provisional
Probab=87.80 E-value=3.8 Score=31.87 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
++|.+||.++..++.-...|...+..-+++...+..+=+.|..++..++.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57888999999988888888888888887777777777777777766543
No 53
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=87.57 E-value=4.4 Score=31.04 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 259 eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.|+.++..|+....-+-..+..|++-...-..+-..|+.++..|..||+
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888888888888888888888888888775
No 54
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.55 E-value=3.8 Score=35.00 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 021757 272 SSLLKGLTDVNQKYDE-------SAVNNRILKADIETLRAKK 306 (308)
Q Consensus 272 ~~L~~el~~L~qk~~~-------l~~ENr~Lra~l~~Lrakv 306 (308)
..|..++..|+++|.. ..-++..|+.+|..|+.-.
T Consensus 71 ~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544 3467888888888877543
No 55
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.49 E-value=3.9 Score=32.90 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI-------LKADIETLRA 304 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~-------Lra~l~~Lra 304 (308)
+-++.||.+|.+.-....-|.-++.+|+++...+..++.. |..+.+.|+.
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3467788888776666666666666666666666666555 5555544443
No 56
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.04 E-value=2.4 Score=42.37 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 249 SR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
-=.|-+.+...||.-+.+++.||..|..+|..+.+++.+.+.|+..|..++.+-.
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 3456677888999999999999999999999999999999999999977765543
No 57
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.96 E-value=2.8 Score=36.68 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGL--TDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el--~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
..+.+|+.++..|+.|...|...+ .+|..+...+..|+..|..+++.|+.
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666555 45667777777777777777777764
No 58
>PRK04325 hypothetical protein; Provisional
Probab=86.94 E-value=4.1 Score=31.87 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
++|.+||.++..++.-...|...+..-++++..|..+=+.|..++..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4588999999999988888888888888777777777777766666654
No 59
>PF15294 Leu_zip: Leucine zipper
Probab=86.81 E-value=2.4 Score=41.07 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 260 LE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
|..++..|+.||..|+.++..++.++....-|+..|..++..|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999999999999999999987
No 60
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=86.71 E-value=0.033 Score=55.54 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=49.6
Q ss_pred CCchHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 021757 228 LDSVDDKRARRMLSNRESARR---SRRRKQAHLNELETQAGQLR-AEHSSLLKGLTDVNQKY 285 (308)
Q Consensus 228 ~d~~e~KR~RR~lsNReSArR---SR~RKk~~l~eLE~qV~~Le-~EN~~L~~el~~L~qk~ 285 (308)
....+.|+..|+.+|+..|.+ +|.||+.+...|..+|+.|+ .++..|..++..|+...
T Consensus 148 ~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~ 209 (395)
T KOG1414|consen 148 TPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEA 209 (395)
T ss_pred CCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHH
Confidence 345678999999999999999 99999999999999999999 88888777776554433
No 61
>PRK04325 hypothetical protein; Provisional
Probab=86.57 E-value=4.9 Score=31.43 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+...++.++..|+....-+...+..|++-...-..+-..|+.++..|..|++
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888877764
No 62
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.34 E-value=11 Score=31.94 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 267 Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
...+-..|..++..+..++..|..+|..|-.+|+.|
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445577888899999999999999999999875
No 63
>PRK04406 hypothetical protein; Provisional
Probab=86.28 E-value=5 Score=31.58 Aligned_cols=51 Identities=10% Similarity=0.175 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+..|+.++..|+...+.+-..+..|++-...-..+-..|+.++..|..+++
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999999999988874
No 64
>PRK00736 hypothetical protein; Provisional
Probab=85.94 E-value=5.9 Score=30.48 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
++|.+||.++..++.-...|...+..-++++..|..+=+.|..++..+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999989988888878777777777777766666554
No 65
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.90 E-value=14 Score=34.04 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 260 LETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (308)
Q Consensus 260 LE~qV~~Le~EN~~L~~el~~L~qk~~~l 288 (308)
++.++..|+.+...+..++...++++..+
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEEL 96 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 66
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.88 E-value=2.2 Score=30.55 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 275 LKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 275 ~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
......|+..|..|..+|..|+.+.+.|++.|
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555544
No 67
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.61 E-value=3.1 Score=36.44 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~q 283 (308)
-.++|..++..|+.|+..|..+|..|+.
T Consensus 110 t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 110 TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777777776664
No 68
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.32 E-value=6.1 Score=37.42 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
-+.+|..|++.|+.|...|+-+++.++.++..+....+.|-.+|..+..+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~ 104 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSG 104 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788888889999999999999988888889998888888888876543
No 69
>PRK00846 hypothetical protein; Provisional
Probab=85.31 E-value=5.6 Score=31.71 Aligned_cols=49 Identities=29% Similarity=0.248 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
++|.+||.++...+.-...|...+...++....+..+=+.|+.++..++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777777777777777776666666666666566666555554
No 70
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.18 E-value=6.3 Score=30.66 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.+++.++..|+....-+-..+..|++-...-..+-..|+.++..|..+++
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888899999988888888888888888888888888888888887764
No 71
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.04 E-value=3.2 Score=37.31 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
.+.+|+..+..+..-|..|..++..|+-++..++...+.|+.+-..|
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444
No 72
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.82 E-value=12 Score=38.30 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=44.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 234 KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
++.+-+.++=+.-.++....+.....|+.+++.++.++..+..++.........+..++..+...+..|+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444555555666677777777777777777777776666666666666666666555543
No 73
>PRK00295 hypothetical protein; Provisional
Probab=84.61 E-value=6.1 Score=30.39 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 260 LE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
++.++..|+....-+-..+..|+.-...-..+-..|+.++..|..+++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888777777777777777777777778888877777664
No 74
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.50 E-value=24 Score=31.04 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 238 R~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
....|++.+-+--.-+++.+..|+.++..+..+...|..+|..++.....|..+=...+.+|..
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~e 98 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSE 98 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666666666666555555555555544444333333333333333333
No 75
>smart00338 BRLZ basic region leucin zipper.
Probab=84.37 E-value=4.7 Score=30.00 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 262 ~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l 299 (308)
..+..|+.+...|..++..|..++..|..+|..|+.++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666666665554
No 76
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=84.33 E-value=4.8 Score=37.71 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 021757 264 AGQLRAEHSSLLKGLTDVNQKY---DESAVNNRILKADI 299 (308)
Q Consensus 264 V~~Le~EN~~L~~el~~L~qk~---~~l~~ENr~Lra~l 299 (308)
...|..||..|++++..|+.+. ..+..||..||..+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555554444444333 36677888877754
No 77
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=84.31 E-value=0.45 Score=47.57 Aligned_cols=54 Identities=28% Similarity=0.441 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 021757 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL-KGLTDVNQKYD 286 (308)
Q Consensus 233 ~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~-~el~~L~qk~~ 286 (308)
+++.|=+.+||.+|-++|.|||..+..|+.+...+..+|..|. .+++.|..++.
T Consensus 284 ~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~ 338 (395)
T KOG1414|consen 284 ERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVK 338 (395)
T ss_pred hhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHh
Confidence 4454447799999999999999999999999999999999887 44444444433
No 78
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.22 E-value=7.3 Score=33.90 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLT 279 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~ 279 (308)
|..|..++..|+.+...|..++.
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 79
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.08 E-value=7.5 Score=37.19 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
++++..+...|..+|..|..++..++.++..+..||..|...+..
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444455555555555555556666666666666554433
No 80
>PHA03162 hypothetical protein; Provisional
Probab=84.05 E-value=2.6 Score=36.89 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 251 RRKQAHLNELETQAGQLRAEHSSLLKGL 278 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~el 278 (308)
-+|+.-+++|..++..|+.||..|++++
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566779999999999999999999998
No 81
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=83.96 E-value=5.4 Score=35.94 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
+.+..+.+|..++..|+.||..|..++..+++.|..|.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666665555555543
No 82
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.91 E-value=5.4 Score=36.87 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
+++|+..-..|..||..|...+..+.+....|..|+..|+.++..+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433
No 83
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=83.90 E-value=3.6 Score=30.57 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
|+..+|.+|+.+...-+ |.. ...-....+.+..+..||+.|++++..++.
T Consensus 1 kw~~Rl~ELe~klkaer-E~R--~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EAR--SLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH-Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677888887766533 211 122345567777899999999999988875
No 84
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.89 E-value=6.1 Score=37.79 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
..+++..+.+.+..||..|..+++.++.+|..+..+-..|+.+...|..+
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555544444443
No 85
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.79 E-value=4.6 Score=39.79 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..|..++..|+.+|..|+.++...+.++..|..+|+.||.....+.+++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~a 71 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKA 71 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777788888888888888888888888888888887777776664
No 86
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.77 E-value=18 Score=35.11 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+..++.++.++.+.+.+...+..++.+.+.++..+..+-..|...+.-+.-||+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888889999999999999999999999999999999999999888874
No 87
>PHA03155 hypothetical protein; Provisional
Probab=83.64 E-value=5.6 Score=34.03 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTD 280 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~ 280 (308)
-+++|+.++..|+.||..|++++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4799999999999999999998853
No 88
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.55 E-value=6.7 Score=32.41 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQL--RAEHSSLLKGLTDVNQKYDESAV 290 (308)
Q Consensus 255 ~~l~eLE~qV~~L--e~EN~~L~~el~~L~qk~~~l~~ 290 (308)
.++..||.+++.| ..+-..|..+++.++-++..+..
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444 44444444444444444433333
No 89
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.52 E-value=8.5 Score=30.59 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
-.+++|..+-..|..|.+.+......|.++...+..|...-..++..|
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555544444444443
No 90
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.99 E-value=23 Score=28.65 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=53.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 237 RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
.++...++.....=..|...+..||.++..|..|...-..+.-.+......+..||+.|+..+..
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45566667777777888899999999999999999888888888888888899999888877653
No 91
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=82.92 E-value=7.1 Score=28.98 Aligned_cols=19 Identities=11% Similarity=0.122 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021757 264 AGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 264 V~~Le~EN~~L~~el~~L~ 282 (308)
+..|+.+...|..++..|.
T Consensus 28 ~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 28 IEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333333
No 92
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.91 E-value=4.6 Score=37.90 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
.++..+.+.+.++.++..|.++.+.++.+|..|..||..|+.+++
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 344444455555556666777777777777788888877777765
No 93
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.72 E-value=14 Score=34.27 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (308)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lr 296 (308)
-++.+..|+.+++.|+..|..|...+...+++...|..+-..+.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555544444433
No 94
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.72 E-value=7.2 Score=37.67 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
+.+|+..+..++.+...|..++..+..+...+..++..++++|..|
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l 85 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKL 85 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 95
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.60 E-value=16 Score=39.01 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 251 RRKQAHLNELETQAGQLRA------------------------EHSSLLKGLTDVNQKYDESAVNNRILK 296 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~------------------------EN~~L~~el~~L~qk~~~l~~ENr~Lr 296 (308)
..+..+|.+||.++..++. .|..|+.+|.+|+..|..|.++|..|.
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt 187 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELT 187 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 3666778888776666554 456677777777777777777774443
No 96
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=82.39 E-value=6.4 Score=35.00 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 259 ELETQAGQLRAEHSSLLKGLTDV-NQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 259 eLE~qV~~Le~EN~~L~~el~~L-~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+||...-.++...++|+.++..+ +.++..+..++..|+.+++.|++++
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555443 2444555555555555555555544
No 97
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=82.36 E-value=5.4 Score=35.21 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRA 269 (308)
Q Consensus 257 l~eLE~qV~~Le~ 269 (308)
|.+...++..|+.
T Consensus 36 l~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 36 LKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHh
Confidence 3333444444443
No 98
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.30 E-value=20 Score=32.76 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 021757 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQL-------RAEHSSLLKGLTDVNQK-------YDESAVNNRILKAD 298 (308)
Q Consensus 233 ~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~L-------e~EN~~L~~el~~L~qk-------~~~l~~ENr~Lra~ 298 (308)
.+-.+.+|....+-+-.+.+.+.+...|+.++..- +.+...|...+..|+++ ......+...|+..
T Consensus 88 V~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~ 167 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSE 167 (190)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777777777777777766654 34444444444444443 22333344555555
Q ss_pred HHHHHHH
Q 021757 299 IETLRAK 305 (308)
Q Consensus 299 l~~Lrak 305 (308)
+..|...
T Consensus 168 ~~~l~~~ 174 (190)
T PF05266_consen 168 AEALKEE 174 (190)
T ss_pred HHHHHHH
Confidence 5554443
No 99
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=82.18 E-value=12 Score=29.38 Aligned_cols=50 Identities=12% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
..||.--......-......+..|+..+.....+|..|++++..|..+|.
T Consensus 10 ~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 10 SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555556666666666666667677777766666653
No 100
>PRK09039 hypothetical protein; Validated
Probab=81.82 E-value=6.2 Score=38.86 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..+...+|..|+.+...|+.++..|+..+..++.+.+..+.+++.|..+|
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666666677777777666655
No 101
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.68 E-value=13 Score=34.40 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l 299 (308)
.-|..++..|+.||..|..+...++.++..|..+|..|+.++
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 556777777888888888888888888888877887777777
No 102
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.36 E-value=2.1 Score=32.67 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 270 EHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (308)
Q Consensus 270 EN~~L~~el~~L~qk~~~l~~ENr~Lra~ 298 (308)
|...|+.++.+|..+...|+.||..||+.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666666666677777777754
No 103
>PRK00846 hypothetical protein; Provisional
Probab=81.32 E-value=12 Score=29.95 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
++++.++..|+....-.-..+..|++.......+-..|+.++..|..|+|
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999988888888888888888888888889999888888875
No 104
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=81.28 E-value=9.6 Score=31.02 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021757 284 KYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 284 k~~~l~~ENr~Lra~l~~Lra 304 (308)
+......||-.|+.++..|+.
T Consensus 45 evtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777666654
No 105
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=81.11 E-value=4.2 Score=33.70 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~q 283 (308)
.+.++++.+++.+++.|+.+|..|..++..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444556666777777777777777776666654
No 106
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=80.93 E-value=2.9 Score=41.77 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (308)
Q Consensus 263 qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lr 296 (308)
+...|+.||..|++++++|+.+...| ||..|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 34456666666666666666666666 555554
No 107
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=80.77 E-value=5.6 Score=37.78 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
++..+||.++..+..++..|+.++ ..|..+|-.|=.++.=|+
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev-------~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREV-------ESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 344666666666655555554444 467777777766665543
No 108
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.73 E-value=17 Score=36.80 Aligned_cols=8 Identities=13% Similarity=0.829 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 021757 113 EYRAYLKT 120 (308)
Q Consensus 113 ~y~a~Lk~ 120 (308)
+|+.+|..
T Consensus 114 ~~~~~i~~ 121 (562)
T PHA02562 114 DFQKYFEQ 121 (562)
T ss_pred HHHHHHHH
Confidence 34444443
No 109
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=80.65 E-value=7.6 Score=32.19 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ 290 (308)
.+.+|+.++..++.+|..|..++..|+.+...|..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35566667777777777766666666666666554
No 110
>PRK00736 hypothetical protein; Provisional
Probab=80.57 E-value=11 Score=29.04 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 260 LE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
++.++..|+.....+-..+..|+.-...-..+-..|+.++..|..|++
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777677777777777766653
No 111
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=80.46 E-value=7.5 Score=37.10 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=33.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 241 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (308)
Q Consensus 241 sNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l 288 (308)
+-|..++.-=..-+.++..|+.+.+.|+.++..|..++..|+.-+...
T Consensus 208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444455556678888888888888888888888877766543
No 112
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.37 E-value=14 Score=40.03 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (308)
Q Consensus 260 LE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra 297 (308)
+..+..+|+.|...|+.++....+++..++.|.+.|+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777777777666666666666666655543
No 113
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=80.24 E-value=12 Score=30.97 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 258 NELETQAGQLRAEHSSL--LKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L--~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.+++.++..++.+...| ...+..|+-....+.-+=+.|.+++..+.+++
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33455555555555555 55555555555555555555555555555443
No 114
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.04 E-value=31 Score=32.06 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
.+|..++..|+.|...|...+..+.........+-..|..++..+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 115
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.82 E-value=8.5 Score=38.55 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 273 SLLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 273 ~L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
+|....+.|.++.+.+...=.+|+.+++
T Consensus 250 kL~~~~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 250 KLVAMKETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333444444444444444444444433
No 116
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=79.76 E-value=11 Score=32.39 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 253 KQAHLNELETQAGQLRAEHSSLLKGLTD 280 (308)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~el~~ 280 (308)
|..-+++|..++..|+.||..|++++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566899999999999999999998864
No 117
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.74 E-value=11 Score=32.73 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
..+.|+.++..|+.++..+-.+|..|+.++..+..+=..|..++..+
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444444444444444444433
No 118
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.35 E-value=14 Score=31.57 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 021757 290 VNNRILKADIETLRAK 305 (308)
Q Consensus 290 ~ENr~Lra~l~~Lrak 305 (308)
.+...|+.++..|+.|
T Consensus 68 ~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 68 KEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555544
No 119
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.35 E-value=17 Score=27.69 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 261 E~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
..++...+..|-.+.++|.+...+...|..+=..|+.+++.||.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444555666666666666555555555555555555555554
No 120
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.30 E-value=42 Score=29.46 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
.+.-++.+++.+..++..+..+..+-..|...+.+.+.+...+..+-..++.....|.
T Consensus 121 ~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (191)
T PF04156_consen 121 LRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLE 178 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666666666666553333333444444444444444443333
No 121
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.18 E-value=11 Score=34.18 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.+|++=..+...|..-|.-|+.++.........|..++..|..++..|+..+
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777777777777777777777777777777777777766554
No 122
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=78.94 E-value=9.8 Score=38.65 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 244 eSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
++|.--|.|-.+.-...|.+++.+..|...|+.+++.+......+..||..||.-+..|.+-.+
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5566667777777777788888888999999999999999999999999999999888877554
No 123
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.78 E-value=6.6 Score=29.44 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~el~~L 281 (308)
+.++.+.+|+.+++.|+.+|..|..++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666777777776666666666655
No 124
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=78.42 E-value=15 Score=27.70 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~ 286 (308)
+.+||.++..+......++.+++.++....
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444444444333333
No 125
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.42 E-value=24 Score=33.16 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
++.++.|+.+++....+-..+..+...|+.+...+..|=.+|..+...||.+|.
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 444555556666666666666666666677777777777777777777777764
No 126
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=78.09 E-value=9.8 Score=36.14 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDV 281 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L 281 (308)
+.+..|..+|+.|+..|-.|..++.-|
T Consensus 107 ~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777776666544
No 127
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.96 E-value=19 Score=35.73 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
..|..-+...+.+|..|..++..|++++.++.-+|..||.++..++.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 56777788899999999999999999999999999999999988764
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.91 E-value=19 Score=36.94 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~EN 292 (308)
+..++.++.....++..+.+.|.++...+..|..+-
T Consensus 75 i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 75 IASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555444
No 129
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=77.73 E-value=10 Score=29.15 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~el~~L 281 (308)
.....+..++.++..++.||..|..++..|
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666544
No 130
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=77.64 E-value=48 Score=30.77 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.|.||. ++..-..-..|.-..-+.++..|...+..-+..-.....+-..++++...|..|.+.++.+|..|+.+|
T Consensus 103 ~eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 103 VEIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 455555666666666777788888877777777777777777777777888888888877777777766
No 131
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.60 E-value=1.3 Score=36.46 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
.||..|...+..|..+|..|..++..|+.++..+...+..|+..+..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 68899999999999999999999999988888888888777766543
No 132
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=77.56 E-value=9.6 Score=31.50 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.|.+++.+.-.+...|.+|..++..|.++...-.. +-.++.++..+++.+|
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk 68 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELK 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHH
Confidence 34555555555555555555555555444443333 4455555655555543
No 133
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.33 E-value=23 Score=31.55 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 267 Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
+..++..+..+++.+++++.....|...||.|++.|...
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677788999999999999999999999999988753
No 134
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.19 E-value=46 Score=31.71 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=31.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (308)
Q Consensus 234 KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk 284 (308)
+-.+++..-.+.+++.-.-++..+++|+.+|.+++.+...+..++..++.+
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555666667777777777777777766666655543
No 135
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=77.07 E-value=11 Score=29.25 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 259 eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.|..+++.|+..|..|...++..+++...+......-.+..-+|+-+++
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ 50 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALK 50 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4677888888889999888888888888888888888877777766553
No 136
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=77.00 E-value=23 Score=34.93 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 243 ReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
-|+++|-....+.++.++|.....-+........+-..+.+++..+..||--|++++.....|+
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888887777777777777778888888899999999999988877654
No 137
>PRK10698 phage shock protein PspA; Provisional
Probab=76.97 E-value=20 Score=33.26 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.+..|+.++...+.....|...+..|+.++..+...-..|.++...-+++.+
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~ 151 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD 151 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777788888888888888888888888888888777766654
No 138
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=76.89 E-value=13 Score=30.40 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (308)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~EN 292 (308)
|+-|-...+.+|..|+.+|..|..++..|+.++.....|-
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555554444444433
No 139
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.54 E-value=21 Score=32.40 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQL 267 (308)
Q Consensus 255 ~~l~eLE~qV~~L 267 (308)
..+.+|+.++..+
T Consensus 83 ~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 83 KKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 140
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=76.37 E-value=17 Score=33.30 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+.+..|+.++..++.....|..++..|+.++..+...-..|.++....+++.
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~ 150 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRL 150 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888888888888888877777766653
No 141
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.11 E-value=55 Score=31.96 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.+.+..|+.+...|..+-..+......+..++.....+...|+.++..+..++
T Consensus 77 ~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 77 DQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555666666555555443
No 142
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.01 E-value=30 Score=35.89 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.+.|+.++.+|+.||..|+..+..|+..+..+..+-..+-.+|+.|+-+++
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 556677899999999999999999999999999999999999999887764
No 143
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=75.87 E-value=16 Score=35.59 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.|+=.+|.+++....|...|..++..|+.+...+..+-+..|..++.||.-||
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~k 116 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVK 116 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 35555566666666666666666666555555555555555566666665554
No 144
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=75.70 E-value=13 Score=40.93 Aligned_cols=56 Identities=21% Similarity=0.387 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.||+..+..|..+...+..++..++.+|..|+..+.....++..|.++++.||.++
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46677888899999999999999999999999999999999999999999998876
No 145
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=75.41 E-value=19 Score=28.84 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~L 295 (308)
-|..|-.+|...+.||..|..++.-|++-+..|+....++
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~ 70 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVF 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3555566666666666666666666666666665554443
No 146
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.10 E-value=56 Score=31.72 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
...|+..+..|+.+...|...+..+..-+..+......|+.++..|++.+
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888889999999999999999999999999999999998888765
No 147
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.06 E-value=63 Score=30.43 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.+..+...+..|+.+...|..++......|..|..-.-.|-.+|.+.|..|
T Consensus 256 ~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 256 EREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345556667777777777777777777888888888888888888877765
No 148
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=75.05 E-value=31 Score=36.58 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 021757 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKKFF 308 (308)
Q Consensus 273 ~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvkm 308 (308)
.|...+..++.+...+..||..|+..|..|+.++.|
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555567778888888888888888753
No 149
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.99 E-value=48 Score=30.30 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 249 SR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
...++-..+.+||.++-.|+.+...|..+......+...+.++-..|++++...+.+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999999999999889999999999999999999999887654
No 150
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=74.90 E-value=9 Score=27.69 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 275 LKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 275 ~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
...+..|..++..|..+|..|+.++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556677777788888888888887764
No 151
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.67 E-value=18 Score=27.01 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l 288 (308)
..+..++..|+.++..|..++..|+++...+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444433
No 152
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=74.61 E-value=21 Score=37.79 Aligned_cols=60 Identities=18% Similarity=0.360 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
+.+.|..=...+.+++..+..|+.|...++.++..+..+...|..||..|+.+|..++..
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333333333445556666677777777777777777777777777777777777766653
No 153
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=74.30 E-value=14 Score=38.52 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=9.0
Q ss_pred HHHHHHhhhhhhHHHH
Q 021757 114 YRAYLKTKLDLACAAV 129 (308)
Q Consensus 114 y~a~Lk~kL~~~~AAv 129 (308)
.|...|+|=-+-+++|
T Consensus 4 ~n~~~~rkQ~~~~~~~ 19 (475)
T PRK13729 4 INTIVKRKQYLWLGIV 19 (475)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3555666655555554
No 154
>PRK09039 hypothetical protein; Validated
Probab=74.09 E-value=47 Score=32.75 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 275 LKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 275 ~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
..++..|+++...|..+...|...|.
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 155
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=73.45 E-value=17 Score=30.79 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 262 ~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
.||-.|+.-...|..++..++++...|..||.+|-+-|+.|
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 34444444445555666666666666777777777766665
No 156
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.31 E-value=18 Score=35.12 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=6.3
Q ss_pred HHHHHHhhh
Q 021757 38 ELEKFLQEV 46 (308)
Q Consensus 38 ~FqkfLeE~ 46 (308)
.++.||+..
T Consensus 15 sL~~FL~~~ 23 (325)
T PF08317_consen 15 SLQDFLNMT 23 (325)
T ss_pred CHHHHHHHh
Confidence 367777775
No 157
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.87 E-value=56 Score=30.77 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 264 V~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+..++.|+..++.++..|+.++..+...|..|..+|..|..++
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 4556666666666666666666677777777777776666543
No 158
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=72.78 E-value=8.7 Score=32.85 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021757 275 LKGLTDVNQKYDESAVNNRILK 296 (308)
Q Consensus 275 ~~el~~L~qk~~~l~~ENr~Lr 296 (308)
+.++.+|.++...|+.||..||
T Consensus 73 k~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 73 KEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555444
No 159
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.54 E-value=45 Score=30.22 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~ 294 (308)
..+|+.++..|+.++..|..++..++.++..+...+..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777766666665544444
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=72.54 E-value=12 Score=35.57 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~L 295 (308)
-=+..|++|+.+|..|+.+++.+..++..++++-..+-.+=..+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999999999999999999999999998888876654443
No 161
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=72.48 E-value=12 Score=33.49 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
.+|..+|..|+.+|..|...+..+..+...+......|+.+...|.
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 4566677777777777766666555555555555555554444443
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.39 E-value=21 Score=34.80 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
+.|.+||.+...|..|...|..+...+.
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 163
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=72.29 E-value=40 Score=34.03 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=47.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 021757 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV--------------NQKYDESAVNNRILKADI 299 (308)
Q Consensus 234 KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L--------------~qk~~~l~~ENr~Lra~l 299 (308)
-|.|.+.-|-|--|.-| +-+++-..+.++|+..|+.|..+|..+ ..-...+..||..|+.++
T Consensus 75 ~kirk~~e~~eglr~i~----es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIR----ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 45566667777766666 445555566677777777777776544 344556778899999988
Q ss_pred HHHHHHh
Q 021757 300 ETLRAKK 306 (308)
Q Consensus 300 ~~Lrakv 306 (308)
..|.+..
T Consensus 151 ~~l~~e~ 157 (401)
T PF06785_consen 151 DALQQEC 157 (401)
T ss_pred HHHHHHH
Confidence 8887654
No 164
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=71.71 E-value=47 Score=29.24 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 264 V~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
-..|+.++..|..++..|.+++..+..|-..|+..++.|..
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577788888777777777777777777777776666653
No 165
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=71.64 E-value=12 Score=40.21 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.+|-.+|.+|..|+.-|+-+|...++-...|+..++.|..+|..+++++
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999888888888888888888887777654
No 166
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=71.64 E-value=30 Score=29.85 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
-...+.+|+.++..|..|--.=..+++.+-.+.+.+..+|+.|+..|..|..+++
T Consensus 12 He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLR 66 (120)
T PF10482_consen 12 HEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLR 66 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777777777766655677777777777888888888888888777664
No 167
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.60 E-value=21 Score=34.60 Aligned_cols=52 Identities=12% Similarity=0.249 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 021757 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES----AVNNRILKADIETL 302 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l----~~ENr~Lra~l~~L 302 (308)
.+....++++..++..++.++..+..++..|++++..+ ...|..|+.++..+
T Consensus 55 ~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 55 ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444545544444444444444333 23444555554444
No 168
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=71.50 E-value=25 Score=34.73 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 268 e~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
+.|...|..++.+++++++.+..||..|.+.+.
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334445555555555555555555555555543
No 169
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=71.16 E-value=14 Score=29.28 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 268 e~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
..+...+..++..++++...+..||..|+.++..|.
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555666666666666666666666665553
No 170
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=71.12 E-value=4.4 Score=39.20 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.++.++|.+|+.|+.-|..|..+|+.=..-|..+...-..+|++|.++..|+|
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~ 269 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLK 269 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999977777777666666678888888888875
No 171
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=70.94 E-value=27 Score=32.19 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 260 LE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
...++..|+.+-..|..++-.+...|..|..|...||.+...+..
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444555555555555544444444555555555544444433
No 172
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=70.83 E-value=86 Score=29.93 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
...+..|+.++..++.+-..|..++..|..++..+..+=..|+.++..++.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666666665555555555544
No 173
>PHA02562 46 endonuclease subunit; Provisional
Probab=70.71 E-value=63 Score=32.81 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 280 DVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 280 ~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
.+++++..+..+...|+.++..|+.+
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~ 242 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDE 242 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544
No 174
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=70.48 E-value=67 Score=29.13 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~ 287 (308)
.-...+.+|+.+...|+.+...|..++..+.++...
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666555554443
No 175
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=70.44 E-value=41 Score=38.30 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 252 RKQAHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN-~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+++..+..|+.+|..++.+- ..|..++..+..++..|..|+..|..++..|+.+.
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666644 66666666666666666666666666666555543
No 176
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.38 E-value=26 Score=34.33 Aligned_cols=78 Identities=23% Similarity=0.258 Sum_probs=49.1
Q ss_pred cCCchHHHHHHHHHHhhH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 227 GLDSVDDKRARRMLSNRE-----SARRSRRRK-QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 227 ~~d~~e~KR~RR~lsNRe-----SArRSR~RK-k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
.+-..++|=.|=|+.|-+ ++-...--- |..|++||..+..|+.++.....++..++..+..|..+-..|+.+|.
T Consensus 85 ~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888832 121111111 34466777777777777776667777777777777777777777776
Q ss_pred HHHH
Q 021757 301 TLRA 304 (308)
Q Consensus 301 ~Lra 304 (308)
....
T Consensus 165 ~rde 168 (302)
T PF09738_consen 165 QRDE 168 (302)
T ss_pred HHHH
Confidence 5544
No 177
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.07 E-value=80 Score=29.01 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGL 278 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el 278 (308)
..+..|..++..++.++..++.++
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l 93 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERL 93 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 178
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=70.06 E-value=6.9 Score=40.37 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
+.|..+|..|..+|..|+.+++.+.-+|..+..||+-|+.--..+++|
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQar 93 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQAR 93 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhc
Confidence 567788888888888888888888888888888888887766666554
No 179
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=69.97 E-value=49 Score=26.49 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
.+|..++..-+.|...|..-++.|+.++.....-|..|..+...++.
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666666666666666666666666554
No 180
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.77 E-value=11 Score=34.66 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l 288 (308)
|-.|.+|..+++ -...++++.+|+.++..|+.+...+.+.+.+|..++...
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 456666666665 355567788888888888887777777777665444433
No 181
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=69.76 E-value=7.8 Score=31.57 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
|+.+++.|..+++.++.+|..|..++..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888888888888888877776554
No 182
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=69.62 E-value=57 Score=31.93 Aligned_cols=22 Identities=18% Similarity=-0.071 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021757 285 YDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 285 ~~~l~~ENr~Lra~l~~Lrakv 306 (308)
...|..+|..+++..+.|+..|
T Consensus 93 ~s~Leddlsqt~aikeql~kyi 114 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYI 114 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777776666666544
No 183
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.56 E-value=42 Score=37.38 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021757 284 KYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 284 k~~~l~~ENr~Lra~l~~Lrakv 306 (308)
....+...|..|..++++|..|+
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~ 453 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKL 453 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666666554
No 184
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=69.39 E-value=4.8 Score=28.83 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 266 ~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l 299 (308)
.|-..|+.|..++.++..+...|..||-.||.++
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------------HHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3334445555555555555555555555555543
No 185
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.35 E-value=43 Score=26.12 Aligned_cols=11 Identities=36% Similarity=0.341 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 021757 264 AGQLRAEHSSL 274 (308)
Q Consensus 264 V~~Le~EN~~L 274 (308)
|.+|..|-..|
T Consensus 14 Ia~L~eEGekL 24 (74)
T PF12329_consen 14 IAQLMEEGEKL 24 (74)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 186
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.05 E-value=36 Score=32.06 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l 288 (308)
.+|++++.+.+.|..|-..+..+|..+.+.+..|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~l 65 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTL 65 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544444444444444443333
No 187
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=68.80 E-value=32 Score=26.28 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 267 Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+..|....+..+-.+..+++.....|+.|..+|..|+.++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666777777777777777777776654
No 188
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=68.79 E-value=82 Score=27.70 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 269 ~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
.+...|...+..|...+..+..|+..|...++.++.+
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444443
No 189
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=68.64 E-value=22 Score=29.36 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 271 HSSLLKGLTDVNQKYDESAVNNRILKAD 298 (308)
Q Consensus 271 N~~L~~el~~L~qk~~~l~~ENr~Lra~ 298 (308)
+..+..++..++.++.......++++-=
T Consensus 53 ~~~~~~~l~~~~~~lk~~r~~~~v~k~v 80 (106)
T PF05837_consen 53 DEELSEKLEKLEKELKKSRQRWRVMKNV 80 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555433
No 190
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.62 E-value=23 Score=28.51 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 270 EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
.+..|..++..|+.+-..+..+|..|+.++.
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455667777777777788888888877764
No 191
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.25 E-value=57 Score=36.42 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=39.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 238 R~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
....+-..=+--+++-...++.|.+++..|+.||..|..+++........+..++..||.++.
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444555555666666666777777777777766666666666666666666665
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.16 E-value=61 Score=33.84 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 275 LKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 275 ~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..++..++.+...+..+|..|+.....++.++
T Consensus 388 q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 388 QTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33344444444445555555555544444443
No 193
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=68.08 E-value=75 Score=26.99 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 250 R~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
|.-.+..|..|+..++.+...+..|.++-..|+.....|..+|..+-+++..|+++|
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555555555555555555555543
No 194
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.04 E-value=22 Score=26.80 Aligned_cols=34 Identities=9% Similarity=0.303 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
.+..|+..+..++.||+.|+..++.+.+-...+.
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777665443
No 195
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=68.02 E-value=68 Score=26.49 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.+.+...+.+.+..|..|...+..-++-.......+..|+.+.+..+.++|
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik 84 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777788888888888888888888888888888888888777664
No 196
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=67.45 E-value=82 Score=27.23 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 253 KQAHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN-~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
.+..+..|+.....|..|. ..+..++.+|---+..+...|..+|.++..|-
T Consensus 60 ~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 60 LASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 3334444444444444443 44555566666666666777777777776653
No 197
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=66.97 E-value=1.1e+02 Score=30.10 Aligned_cols=73 Identities=25% Similarity=0.389 Sum_probs=47.5
Q ss_pred HHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 234 KRARRMLSNRESARRSRRRK-QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 234 KR~RR~lsNReSArRSR~RK-k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+..|.-+.+..++-++.++. -+.+.+|-.++..|..+-..+..++..++.+...+-..=..|...+..|..+.
T Consensus 26 ~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~ 99 (294)
T COG1340 26 KEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKR 99 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345666666666665544 35566777777777777777777777777766666666666776666666553
No 198
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.88 E-value=27 Score=37.18 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
|++|..++..++.+...|..++..+.++......++..|.+++.
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555544444
No 199
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.60 E-value=46 Score=35.90 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~ 286 (308)
.+..+|+..+..|+.++..|..++..+..+..
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544433
No 200
>PRK14127 cell division protein GpsB; Provisional
Probab=66.50 E-value=44 Score=28.22 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHh
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESA-------------VNNRILKADIETLRAKK 306 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~-------------~ENr~Lra~l~~Lrakv 306 (308)
+.|..++..|+.+|..|..++..++.+..... .-|--+..+|..|...|
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 33444444444455555555544444443221 24555566666666554
No 201
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=66.41 E-value=75 Score=31.69 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 021757 233 DKRARRMLSNRESARRSRRRKQAHL--------------------------------NELETQAGQLRAEHSSLLKGLTD 280 (308)
Q Consensus 233 ~KR~RR~lsNReSArRSR~RKk~~l--------------------------------~eLE~qV~~Le~EN~~L~~el~~ 280 (308)
.++.|+++++|...-..=.||..++ --|..++.+|+.+...+..+|..
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~ 200 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEI 200 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888887766666664332 22333444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021757 281 VNQKYDESAVNNRILKADI 299 (308)
Q Consensus 281 L~qk~~~l~~ENr~Lra~l 299 (308)
++.++..+...|..|+.-|
T Consensus 201 ~~k~L~faqekn~LlqslL 219 (323)
T PF08537_consen 201 TKKDLKFAQEKNALLQSLL 219 (323)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555665555433
No 202
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=66.36 E-value=44 Score=27.84 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 267 Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
|...+..|..++..+.+++..+...+..++.++..|+..+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555555555555555555555555555555555544
No 203
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=66.11 E-value=25 Score=27.00 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 269 ~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
.....+..++..++++...+..||..|+.++..|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445556666666666666777777776666654
No 204
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=65.72 E-value=7.4 Score=27.89 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=9.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (308)
Q Consensus 236 ~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el 278 (308)
.++...||+=|+..-... ..+.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 345556666665554444 446677777777777776666554
No 205
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=65.66 E-value=57 Score=26.20 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021757 286 DESAVNNRILKADIETLRAK 305 (308)
Q Consensus 286 ~~l~~ENr~Lra~l~~Lrak 305 (308)
..+..+-..|+.++..|..+
T Consensus 70 ~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 206
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.47 E-value=50 Score=26.23 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
++|.+||.++..-+.-...|...+.+.+.-...+...=+.|-.++..+
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777666666566665555554444444444444444444433
No 207
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=65.47 E-value=18 Score=33.63 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 269 ~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
.||..|..++..+..++..|..||..|+.-.+.++.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~ 160 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQY 160 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888887776555443
No 208
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.40 E-value=59 Score=37.09 Aligned_cols=68 Identities=13% Similarity=0.255 Sum_probs=48.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 239 MLSNRESARRSRRRKQAHLNELETQA-GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 239 ~lsNReSArRSR~RKk~~l~eLE~qV-~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
...+=...+....+....+.+++.+. ..+..+-.++..++..|+++...+...+..|+.+++.+..++
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777788888777 777777777777777777777777777777777777776654
No 209
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=65.35 E-value=32 Score=28.58 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021757 284 KYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 284 k~~~l~~ENr~Lra~l~~Lra 304 (308)
++..+..+|+.|..++..++.
T Consensus 23 kl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 23 KLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555543
No 210
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.25 E-value=26 Score=37.72 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTD 280 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~ 280 (308)
+..|+.+|+.|+.||+.|..++..
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee 447 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEE 447 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 211
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=64.89 E-value=48 Score=32.63 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 231 VDDKRARRMLSNRESARRSRRRKQ---AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~RKk---~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
.-.||+.|++.---.-+|-|..+. -.+++|+.+-..|+..-.+|.+++..|++-+.+..
T Consensus 228 ~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 228 LRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888844334444445444 45677888999999999999999999888766543
No 212
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.73 E-value=37 Score=30.86 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 260 LETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (308)
Q Consensus 260 LE~qV~~Le~EN~~L~~el~~L~qk~~~ 287 (308)
|..++++....|..|...+..|+..+..
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666665555555
No 213
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.72 E-value=18 Score=37.61 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 281 VNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 281 L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+.++...|..+-..|+..+..|+.+|
T Consensus 114 ~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 114 LTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555544
No 214
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=64.70 E-value=39 Score=35.25 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
+|+.+...+...+..|+.....+..++..++.++..|..+-|.|+.+++.
T Consensus 443 qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 443 QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888888888888899999999999999999999999999987
No 215
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.97 E-value=67 Score=35.22 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
.+.||.+...|+.|...++.+=..|-+.|..|+.||-.|+.+|-.|+.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666667777777777777777777777764
No 216
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=63.79 E-value=46 Score=34.17 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH---HHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL----------------RAEHSSLL---KGLTDVNQKYDESAVNN 292 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~L----------------e~EN~~L~---~el~~L~qk~~~l~~EN 292 (308)
+.|..||+...-+-=||.|..=...|.+|-.-|-.. ..-+.+|+ .+..++.++...|+..|
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n 306 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTN 306 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 344455556666777777777777777776543222 12222232 23334455556666777
Q ss_pred HHHHHHHHHHHHHh
Q 021757 293 RILKADIETLRAKK 306 (308)
Q Consensus 293 r~Lra~l~~Lrakv 306 (308)
+.|..+++.|....
T Consensus 307 ~~L~~rieeLk~~~ 320 (411)
T KOG1318|consen 307 QELALRIEELKSEA 320 (411)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776543
No 217
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=63.74 E-value=61 Score=29.26 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
+..|+.++..+......|...+..+..++..+..+=..|+++...-+++
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~ 148 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQ 148 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555444443
No 218
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=63.61 E-value=30 Score=28.83 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 260 LE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l 299 (308)
|..++..|+.++..+..++..+++++.....+.+.||.++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666677777777777777777777777777776653
No 219
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.40 E-value=74 Score=31.23 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+.-|..++..|+.....|.+++.+....+..+......|+.++..|+..|+
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555556666666667776666653
No 220
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=63.38 E-value=37 Score=36.63 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
..|.+||.+-+.|..|.+++..+++++++.+-....|-..||..|+.-+..
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 567888888888888888888888888888877777777777777655443
No 221
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=63.22 E-value=83 Score=25.75 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=28.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 237 RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
.|-++.-+...+.+..|...+..|..++..|+.+...|...+..+.
T Consensus 63 ~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 63 ERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666677777777777777666666666554
No 222
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=62.63 E-value=25 Score=37.24 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
.+..||.++..|+.||..|..+|..++.+++....--..+..++++|..
T Consensus 163 r~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lle 211 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLE 211 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456677777777778777777777776655544333333333333333
No 223
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=62.48 E-value=41 Score=33.24 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=14.2
Q ss_pred ChHHHHHHHHhhhhhhHHHHHHh
Q 021757 110 DSDEYRAYLKTKLDLACAAVALR 132 (308)
Q Consensus 110 dp~~y~a~Lk~kL~~~~AAva~~ 132 (308)
+..+-+..|-..|...+..|+--
T Consensus 94 ~L~~~~~~le~~L~~~~e~v~qL 116 (306)
T PF04849_consen 94 DLSERNEALEEQLGAALEQVEQL 116 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666776666666543
No 224
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=62.47 E-value=63 Score=27.83 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
.+|..+|..|+.|+..+..-..+|..++..|+-.++..++++..|
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 355677777777777777777777777777777777777665543
No 225
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=62.29 E-value=55 Score=33.82 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDV 281 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L 281 (308)
++++.++|..+..|+.||..|..+....
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887666543
No 226
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=62.17 E-value=33 Score=31.33 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
+.=.|.|+..|+.+|..|..+++.| .....+|..+-.++..|.-
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~L----i~~Ar~Ne~~~~~~~~l~l 85 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEEL----IENARENEAIFQRLHRLVL 85 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666543 3445566666666655543
No 227
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.04 E-value=62 Score=25.69 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 259 eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+||.++..|+...+.-...++.|+..+......=..++.++..|..|+
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555544444444444555555554444
No 228
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.02 E-value=32 Score=36.42 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
|..+..+...+..||..|..+|.+++++...+..||..|.+-+..
T Consensus 221 l~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 221 LQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566677777777777777777777777766655544
No 229
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=62.02 E-value=56 Score=26.57 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
.|..|..-+..|+..|..|.. +++.|..-|+..|.+++....
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~-------~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHA-------QLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 344444445555544444444 445677778877777765543
No 230
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.66 E-value=44 Score=32.69 Aligned_cols=50 Identities=28% Similarity=0.394 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+...+.++...+.+...|..++..|+.+|.....+...|..++.....++
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444555555555555556666666666666666666666666555554
No 231
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=61.62 E-value=58 Score=26.55 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 263 qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+|-....||-.|+.++..++.=+ ..-+-..|-++|..|+.++
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhhC
Confidence 34457789999999988877666 6668889999999998764
No 232
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=61.58 E-value=55 Score=30.03 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.-|++-|+.||.+|...+.-.......|...+.-......-....+.++..|+..|+
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~ 119 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALK 119 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999888888888888887777777777777888888877664
No 233
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=61.29 E-value=21 Score=37.13 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 230 SVDDKRARRMLSNRESARRSRRRKQAH----------LNELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 230 ~~e~KR~RR~lsNReSArRSR~RKk~~----------l~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
.+..||.|-|++--||-|+.+..=..+ =.+|..+|.+|+.+|..|..+|..|+
T Consensus 251 KrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345667777888888888877665443 25677888888888888888876444
No 234
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=61.24 E-value=30 Score=30.14 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~ 298 (308)
.+...|..++.|+.|...=-.++..|++++..+...|+.|..+
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555566666666666666667777777788888877654
No 235
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.00 E-value=30 Score=36.80 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l 299 (308)
.|+..++.+-..+......|..++.....++..+..+|..|+.+|
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555554455555555555554444
No 236
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.86 E-value=52 Score=37.41 Aligned_cols=69 Identities=25% Similarity=0.320 Sum_probs=48.6
Q ss_pred HHHHhhHHHHHHHHH----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 238 RMLSNRESARRSRRR----KQA------HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 238 R~lsNReSArRSR~R----Kk~------~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
-+|+++..|.|.+.- +.. ..+....++++|+.|...+..++..++..|....-.|+.|+.+.+.|..++
T Consensus 414 erLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 414 ERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456777777765421 112 245666778888888888888888888888877777888877777776654
No 237
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.79 E-value=1e+02 Score=31.96 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 261 ETQAGQLRAEHSSLLKGLTDVNQKYD 286 (308)
Q Consensus 261 E~qV~~Le~EN~~L~~el~~L~qk~~ 286 (308)
..++..++.+.+.|+.++..+++++.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 238
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.57 E-value=51 Score=31.70 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021757 290 VNNRILKADIETLRAKK 306 (308)
Q Consensus 290 ~ENr~Lra~l~~Lrakv 306 (308)
+.+..|..++++|+--+
T Consensus 89 t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 89 TDDAALEDRLEKLRMLA 105 (247)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 55555555677766544
No 239
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=60.54 E-value=94 Score=28.71 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
..|-.-...+..||..|..+|..|.+++..|...+..|..+-..|+..
T Consensus 152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566788999999999999999999998888888888777653
No 240
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.43 E-value=1.5e+02 Score=28.64 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 260 LE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+..-+.....+|..+.+++..-++....+..+...|+++++.|+..+
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566789999999999999999999999999999999999865
No 241
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=60.42 E-value=1.2e+02 Score=27.14 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 265 ~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
..++.++..|..++. .+..+|+.|...+..
T Consensus 85 d~~~~e~k~L~~~v~-------~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 85 DQWRQERKDLQSQVE-------QLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh
Confidence 344555555555554 444555555444433
No 242
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=60.21 E-value=66 Score=31.27 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 233 ~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
-|-.-.-|+|||..=..++++++.| ..++..|+...- -..+|..|++++..++.+|-+..++|..+.++
T Consensus 126 yR~~LK~IR~~E~sl~p~R~~r~~l---~d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 126 YRIHLKSIRNREESLQPSRDRRRKL---QDEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHH---HHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 3444456788886644443333333 344444443322 24577888888989999998888888877553
No 243
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=60.05 E-value=1.5e+02 Score=29.63 Aligned_cols=57 Identities=26% Similarity=0.400 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 229 DSVDDKRARRMLSNRESARRSRRR------KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (308)
Q Consensus 229 d~~e~KR~RR~lsNReSArRSR~R------Kk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~ 287 (308)
-+.|.||+.-+|+ +=||-+-.| =+.+-+.+|.++.+|+.+|.-+.++-+.|+++|.+
T Consensus 3 ~~~dk~ri~~li~--~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyre 65 (328)
T PF15369_consen 3 CPEDKRRIANLIK--ELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRE 65 (328)
T ss_pred ChhHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3556677766664 355554433 34556778888999999998888888888777654
No 244
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=59.95 E-value=50 Score=30.27 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 269 ~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
-.+.....++.....+...+..++..|..+|..|+.+|+
T Consensus 150 L~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 150 LENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667778888899999999999999998876
No 245
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.92 E-value=20 Score=27.38 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
++-|..++..|+..|..|..+++.|+
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 246
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=59.91 E-value=41 Score=35.66 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 021757 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKFF 308 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvkm 308 (308)
.++++-..++.++...+......+.++|+....++.....||..|-.+|..|..|+||
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~ 251 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKY 251 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3555566677777777777777777777777777778888888888888888887764
No 247
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=59.83 E-value=1e+02 Score=25.63 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 280 DVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 280 ~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
..+.....+...|..|+.++...+.
T Consensus 41 ~ar~e~~~~e~k~~~le~~l~e~~~ 65 (100)
T PF06428_consen 41 DARRERAALEEKNEQLEKQLKEKEA 65 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666655554443
No 248
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=59.76 E-value=18 Score=33.55 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 266 ~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+|+.+...|+.++..|...+..|..|+..|++++..+....
T Consensus 109 qlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~ 149 (198)
T KOG0483|consen 109 QLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREM 149 (198)
T ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 34445555555555555555666666666666666554443
No 249
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=59.37 E-value=75 Score=24.04 Aligned_cols=45 Identities=7% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
.++.|..+|..|..+...|...+..++.....+..|-..-..+|.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777666666555555444444333
No 250
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=59.03 E-value=55 Score=31.96 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..++.+..++..|+.||..+..+....+..+..+..|+..+..++..++.++
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~ 295 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKI 295 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667778888888888888888888888888888887777777776654
No 251
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=58.96 E-value=86 Score=28.09 Aligned_cols=56 Identities=11% Similarity=0.254 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (308)
Q Consensus 233 ~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l 288 (308)
.+..+++++.|.-|+-.=++|-....+|..++...+.....|..+|+.|..++...
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~~ 138 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMASK 138 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566788888888888888989999999888888888888888887776665543
No 252
>PF14282 FlxA: FlxA-like protein
Probab=58.90 E-value=58 Score=26.86 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 251 RRKQAHLNELETQAGQLRAEHSSLLKGLT 279 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~el~ 279 (308)
..|+..+..|..++..|+.+...|..+..
T Consensus 47 e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 47 EQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444
No 253
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.84 E-value=1.2e+02 Score=26.23 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=29.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 238 RMLSNRESARRSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQKYDES 288 (308)
Q Consensus 238 R~lsNReSArRSR~RKk~~l~eLE~-------qV~~Le~EN~~L~~el~~L~qk~~~l 288 (308)
+++..-+.+...-.+|++.++.|+. +|..|+.+...+..++..+..++..+
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666642 45555666666666665555555544
No 254
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=58.76 E-value=38 Score=38.48 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
.++++|+..+-.|+.||..|..+++.|.
T Consensus 530 ~k~eeLe~~l~~lE~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 530 NKLEELEELLGNLEEENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444
No 255
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=58.14 E-value=33 Score=33.06 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l 299 (308)
.++.+|..+.+.|+.++..+. .+..+...++.||..||..+
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 66 KSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444433332 22344556666666666544
No 256
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=58.09 E-value=53 Score=31.04 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=23.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 272 SSLLKGLTDV-NQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 272 ~~L~~el~~L-~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..++.++..+ ..++..+..||..|+.+++.|+..+
T Consensus 104 ~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 104 AKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 5667777888888888888777654
No 257
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=58.03 E-value=1.1e+02 Score=28.26 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 264 V~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
..-|+.|-..|..++..=+.+...++.|++.+..++..=+.|.|
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K 179 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLK 179 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588888999999998888999999999988888877666554
No 258
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=57.90 E-value=41 Score=33.79 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (308)
Q Consensus 259 eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~EN 292 (308)
+|+.++..|+.++..|..++..++++...+..|.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (398)
T PTZ00454 26 ELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEV 59 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444444443333333
No 259
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=57.89 E-value=1e+02 Score=35.04 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
++.++..++..|+.....+..++..+.+.+..+..+-..++.++..++.
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA 488 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555555555555555555554444443
No 260
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=57.42 E-value=65 Score=29.72 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 277 GLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 277 el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+|..|.+++..+...|-.|...+..|++.|
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei 205 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEI 205 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666655555555555444
No 261
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.05 E-value=98 Score=33.43 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLN----ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~----eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
|.|..|--+-|-..-..+-.++...+. .+|.+--.|+.|...++-+-+.|-+.|..|+.||=.|..++..||
T Consensus 115 eLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR 190 (772)
T KOG0999|consen 115 ELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR 190 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 455555555554433332222222221 122333334444444444444444444444444444444444443
No 262
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=57.02 E-value=1.3e+02 Score=30.99 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 266 ~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.+..-...+..++..+..+...+..+=+.|+.++..|+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555666666666666666665554
No 263
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=57.02 E-value=27 Score=27.92 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~ 298 (308)
|.+.+.++..|..-...|+.+|..+..-...|..++..++..
T Consensus 14 L~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 14 LNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555555555556666655555555566666666654
No 264
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.81 E-value=36 Score=37.45 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 254 QAHLNELETQAGQLRAEHSSLLK---------------------GLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~---------------------el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..+|.++..++..+..||..|.. ++..|..++..++-||..||-++..|...|
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888887765 445677888888888888888888776554
No 265
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.79 E-value=79 Score=35.38 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+-..+=|..+.+|..+++.|+..+..|..+++.|..+++....+...|+.++.-|+.+++
T Consensus 657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333444555555555555555555555555555555555555555666665555543
No 266
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=56.58 E-value=26 Score=28.54 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 273 ~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
.+..+...|...+..+..+|..|..+|..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677788889999999999999999999875
No 267
>PRK14160 heat shock protein GrpE; Provisional
Probab=56.45 E-value=55 Score=30.63 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
.+..|+.++..|+.++..|..++..++.++..+.++..-+|.+...
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777777777666666655555443
No 268
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=56.35 E-value=1.9e+02 Score=28.21 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 231 VDDKRARRMLSNRESARRSRRRKQAHLN-ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~RKk~~l~-eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+|.|-.-|.+-.+.--=++..|-|.-.. +|....++-..-..+|..++.+|+++.+++.-.-.=||+++..|-.|+
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc 88 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKC 88 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHH
Confidence 3445444555565555555555554433 444444443334445555555565555555555555555555554443
No 269
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=56.30 E-value=1.3e+02 Score=28.06 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 231 VDDKRARRMLSNRESARRSRRRKQA----HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~RKk~----~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
.-.+|.||....+.++=.-+-+=.+ +|...-.+|..|+..|+.|...+.+|+.-|..|.
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLD 82 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLD 82 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3467788877777776544333222 1222223455566666666655555554444443
No 270
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=56.11 E-value=1.2e+02 Score=34.09 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=38.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 239 ~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
+.+.-++++.+.........+|..++..+..+-..+..+.+.....+..+..|-..|..+++.|+..
T Consensus 450 i~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 450 IQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666555556666666666666555555555555555555555555555555555544
No 271
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=56.07 E-value=56 Score=34.92 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 274 LLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 274 L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
|..+|..|-+++..|..||..||.+|..|.
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 444444444444455555555555555443
No 272
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=55.95 E-value=57 Score=35.50 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=6.0
Q ss_pred cchhHHHHHHhhh
Q 021757 34 QSEWELEKFLQEV 46 (308)
Q Consensus 34 ~SEW~FqkfLeE~ 46 (308)
+-|.||| +|+++
T Consensus 189 ~n~~~~~-~l~~~ 200 (697)
T PF09726_consen 189 ENEFYMQ-LLQQA 200 (697)
T ss_pred HHHHHHH-HHHHh
Confidence 3455553 45554
No 273
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.86 E-value=61 Score=26.02 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=29.4
Q ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 228 LDSVDDKRARRMLSNRESARRSRRRKQ----AHLNELETQAGQLRAEHSSLLKGLT 279 (308)
Q Consensus 228 ~d~~e~KR~RR~lsNReSArRSR~RKk----~~l~eLE~qV~~Le~EN~~L~~el~ 279 (308)
+...|....-+.+-. +-.+-|.||. ..+..|..++..|..+|..|..++.
T Consensus 46 Ls~~eL~~LE~~Le~--aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 46 LSLKELQQLEQQLES--ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred cchHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455444444443 3445555554 4566777777777777777776653
No 274
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=55.84 E-value=1.3e+02 Score=28.02 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~EN 292 (308)
-.....++..|+.|...+..+|..|+.++..|..++
T Consensus 149 Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 149 QQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555566666666666665555555555443
No 275
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=55.80 E-value=1.7e+02 Score=26.86 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 275 LKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 275 ~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
..++..+.+++..+.-|+.+|.+++..|.
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555544443
No 276
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=55.49 E-value=99 Score=24.20 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l 288 (308)
.+|......-..+|..|..++..|.++...|
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 277
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=55.39 E-value=99 Score=28.91 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhC
Q 021757 272 SSLLKGLTDVNQKYDESAVNNR---ILKADIETLRAKKF 307 (308)
Q Consensus 272 ~~L~~el~~L~qk~~~l~~ENr---~Lra~l~~Lrakvk 307 (308)
..|.+++..|+++...+..++. .|+++.+.|+..++
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555554444 34455555554443
No 278
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.98 E-value=73 Score=33.33 Aligned_cols=69 Identities=23% Similarity=0.422 Sum_probs=41.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 021757 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES--------AVNNRILKADIETLRAK 305 (308)
Q Consensus 234 KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l--------~~ENr~Lra~l~~Lrak 305 (308)
+..++|.+.-+.-+|. .+.|++|+.++..-+.|+....-+--.|..+..++ -.||..++++|+.||..
T Consensus 242 ehv~km~kdle~Lq~a----Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~ 317 (575)
T KOG4403|consen 242 EHVNKMMKDLEGLQRA----EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVA 317 (575)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 3444555555544433 35667777777666666555444444455444422 36788888888888876
Q ss_pred h
Q 021757 306 K 306 (308)
Q Consensus 306 v 306 (308)
|
T Consensus 318 L 318 (575)
T KOG4403|consen 318 L 318 (575)
T ss_pred H
Confidence 5
No 279
>PRK02224 chromosome segregation protein; Provisional
Probab=54.81 E-value=1.6e+02 Score=31.89 Aligned_cols=49 Identities=27% Similarity=0.407 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.+|+..+..|+.+...|..++..+..+...+..+...|+.++..++.+|
T Consensus 352 ~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555555555555555555444
No 280
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.65 E-value=74 Score=29.45 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 021757 296 KADIETLRAK 305 (308)
Q Consensus 296 ra~l~~Lrak 305 (308)
..+|..|+.+
T Consensus 175 e~~i~~L~~~ 184 (237)
T PF00261_consen 175 EEKIRDLEEK 184 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 281
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=54.64 E-value=2.2e+02 Score=27.96 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.+.|+..+..|+.+...|.+.++.+..-+-.+......|+.++..|++.+
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~ 195 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLE 195 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45566777888888888888888887777777777777777777777643
No 282
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=54.41 E-value=54 Score=34.23 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRA-----------EHSSLLKGLTD------------------------VNQKYDESAVNNRILKADI 299 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~-----------EN~~L~~el~~------------------------L~qk~~~l~~ENr~Lra~l 299 (308)
.++..|-.++..|+. ||..|..+|.+ .++++..+..||..|+++|
T Consensus 385 rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqi 464 (488)
T PF06548_consen 385 RFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQI 464 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655555 88888877763 3467778889999999999
Q ss_pred HHHHHHhCC
Q 021757 300 ETLRAKKFF 308 (308)
Q Consensus 300 ~~Lrakvkm 308 (308)
+.|..|-+|
T Consensus 465 ekLK~kh~~ 473 (488)
T PF06548_consen 465 EKLKRKHKM 473 (488)
T ss_pred HHHHHHHHH
Confidence 999887543
No 283
>PRK10963 hypothetical protein; Provisional
Probab=54.35 E-value=49 Score=30.50 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 021757 270 EHSSLLKGLTDVNQK 284 (308)
Q Consensus 270 EN~~L~~el~~L~qk 284 (308)
+|..+..++..+.-+
T Consensus 69 ~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 69 ANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 284
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.55 E-value=1.4e+02 Score=34.29 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 267 Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
|+.|...|..++..+++++..+..+=..|+.++..|+++|
T Consensus 820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 285
>PRK04863 mukB cell division protein MukB; Provisional
Probab=53.38 E-value=1.5e+02 Score=35.17 Aligned_cols=20 Identities=5% Similarity=-0.007 Sum_probs=10.7
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 021757 234 KRARRMLSNRESARRSRRRK 253 (308)
Q Consensus 234 KR~RR~lsNReSArRSR~RK 253 (308)
++.+.+.+.++.|++.+.-+
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666655443
No 286
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=53.34 E-value=92 Score=33.82 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 021757 290 VNNRILKADIETLRA 304 (308)
Q Consensus 290 ~ENr~Lra~l~~Lra 304 (308)
.+|+.|..+|..|+.
T Consensus 300 ~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 300 EERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHhhc
Confidence 555555555555544
No 287
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=53.27 E-value=1.1e+02 Score=27.27 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=28.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 240 LSNRESARRSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 240 lsNReSArRSR~RKk~~l~eLE~-------qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
+.+-+.|...-.||++.++.|.. ++..++.+...+..++..++.++..+.
T Consensus 134 ~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is 190 (236)
T PF09325_consen 134 LIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666665555543 355566666666666666666666553
No 288
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=53.24 E-value=1.3e+02 Score=25.48 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
+.+......+..++.....|..-=....+++..+..+|..|+.+|..
T Consensus 14 ~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 14 AALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 33444444444444444444333334567777888899999888765
No 289
>PF14645 Chibby: Chibby family
Probab=53.01 E-value=54 Score=27.79 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTD 280 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~ 280 (308)
..|+.+.+.|+.++.-|..-+++
T Consensus 81 ~~L~EENN~Lklk~elLlDMLte 103 (116)
T PF14645_consen 81 QQLEEENNLLKLKIELLLDMLTE 103 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444443
No 290
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=52.74 E-value=1.1e+02 Score=31.52 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 262 ~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
.-+..|+.|...|..+++.-..+....+.+...|..+++.-+
T Consensus 139 Dlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk 180 (561)
T KOG1103|consen 139 DLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEK 180 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888777777777777777777766543
No 291
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=52.24 E-value=66 Score=28.02 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
-|......+..|+.||.-|+..|-.+++-|..=...=..|+.++..+
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35556677889999999999999988888877766666666666543
No 292
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.10 E-value=98 Score=26.82 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 248 RSRRRKQAHLNELETQAGQLRAEHSSLL-------KGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~Le~EN~~L~-------~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
.-|.++..+++.++..+...+.+...|. .++..++.++..++.+=..++.++..+
T Consensus 110 ~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 110 DDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555544444443332 244444444444444444444444333
No 293
>PHA03011 hypothetical protein; Provisional
Probab=51.75 E-value=1.1e+02 Score=25.99 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..+++|-.|...|-.|-+-+..+...+.+-.+.-..+=--|++++..|...+
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 4566666777777777666666666665555554445555666666665543
No 294
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.55 E-value=1.1e+02 Score=30.41 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 280 DVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 280 ~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.|.+-+.....+|..|+.++..|++++
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl 95 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKL 95 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666666554
No 295
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=51.29 E-value=63 Score=35.39 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 262 ~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
..+...+.||..|...+.++...+..+..+-..||.+|..+.
T Consensus 48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 48 QELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555555443
No 296
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.13 E-value=68 Score=34.30 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+.+.+|+.++..|..+...+..++..+..++..+..+....+.....|...+
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555554443
No 297
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=50.96 E-value=1.3e+02 Score=24.71 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN-~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
+|=..=|++|..|..-. .....++..|+.+...+..||..|+.++..-+
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777776322 22556677777777777777777777666554
No 298
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=50.84 E-value=1.5e+02 Score=24.98 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~ 286 (308)
.|-.++.+++.|...|..|.++++.|+.++.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555544
No 299
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.76 E-value=61 Score=33.87 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=30.6
Q ss_pred HhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q 021757 241 SNRESARRSRRRKQAH----LNELETQAGQLRAEHSSLLKGLTDVNQKYDE----SAVNNRILKADIETLRAKK 306 (308)
Q Consensus 241 sNReSArRSR~RKk~~----l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~----l~~ENr~Lra~l~~Lrakv 306 (308)
+|-++++.+=.||.+. +++++.+...++.+|..|.+.......++.. +...+..+..+|..|+.+|
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444332 3445555555555555555444433333332 2334444455555555554
No 300
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=50.27 E-value=1.1e+02 Score=26.27 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=40.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (308)
Q Consensus 238 R~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lr 296 (308)
|..+.|-..---|.==+++|..||-++..++.-+..|..++.-|...+......+..|+
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44555666666666666777777777777777777777777777777666666655443
No 301
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=50.03 E-value=99 Score=26.26 Aligned_cols=63 Identities=25% Similarity=0.252 Sum_probs=37.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 239 ~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
+..|+.-|.+.=. ++..++++..++..+-.+...|..++..+.+++..+ ..+-....=...|+
T Consensus 40 ~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~ 102 (150)
T PF07200_consen 40 LAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQ 102 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHH
Confidence 4567777765533 346677777777777777777777777777766666 44444433333333
No 302
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=49.95 E-value=97 Score=30.44 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 242 NReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
|.|+-+.+- +-....|..||..|+..|..++.++...+.++..|.
T Consensus 68 ~~e~e~~sy---~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 68 NKEFERQSY---SNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455544332 345667777888888888888888877777766654
No 303
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=49.95 E-value=56 Score=25.60 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~E 291 (308)
+..|+.++..++.+...|..++..+..++..+...
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544443
No 304
>COG5570 Uncharacterized small protein [Function unknown]
Probab=49.87 E-value=32 Score=25.99 Aligned_cols=52 Identities=29% Similarity=0.366 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.||.+|+.+-..|+.|.+.-...-.-=-..+..|...--.||.+|+.|++++
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4667777777777766655432211111223344455556788888887764
No 305
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=49.85 E-value=1.6e+02 Score=33.27 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHH
Q 021757 229 DSVDDKRARRMLSNRESARRSRRRK 253 (308)
Q Consensus 229 d~~e~KR~RR~lsNReSArRSR~RK 253 (308)
|..+.+++-|++.|+-.-+.+-.-|
T Consensus 100 dlk~~~sQiriLQn~c~~lE~ekq~ 124 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEMEKQK 124 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999987766655444
No 306
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=49.78 E-value=1.2e+02 Score=27.52 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
++.++.|+.+.......+..+...+..+.
T Consensus 45 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 73 (177)
T PF03234_consen 45 KQEIEELKYERKINEKLLKRIQKLLSALD 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666665555544444444444443
No 307
>PF15556 Zwint: ZW10 interactor
Probab=49.58 E-value=2.4e+02 Score=26.90 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=30.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 234 KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
|++--|.++|.+...-......||..|..-. .+++.+....++++..+..|-..|+.+...-+.|+
T Consensus 113 KKqva~eK~r~AQkqwqlqQeK~LQ~Lae~s-------AEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKL 178 (252)
T PF15556_consen 113 KKQVAMEKLRAAQKQWQLQQEKHLQHLAEVS-------AEVRERQTGTQQELERLYQELGTLKQQAGQEQDKL 178 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555444444444444554444433 34444444444555555555555555555444443
No 308
>PLN02939 transferase, transferring glycosyl groups
Probab=49.54 E-value=1.3e+02 Score=34.35 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 281 VNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 281 L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
|.+++..|..||..||.+++.|.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAEL 249 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67888999999999999999998875
No 309
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=49.46 E-value=57 Score=32.38 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lr 296 (308)
+.+|+.++++|+..+..|..++..+++++..+..++..|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666666666666666666666666665554
No 310
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=49.36 E-value=39 Score=26.66 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l 288 (308)
|..|..+-+.+.-|+-.|++++..+++++...
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~a 41 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHA 41 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666677777777777666665443
No 311
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=49.23 E-value=1.6e+02 Score=24.68 Aligned_cols=14 Identities=36% Similarity=0.230 Sum_probs=6.3
Q ss_pred HHHHHHHhhHHHHH
Q 021757 235 RARRMLSNRESARR 248 (308)
Q Consensus 235 R~RR~lsNReSArR 248 (308)
+.+|++-.+..+=.
T Consensus 22 ~~~~~l~~~l~~~l 35 (117)
T COG2919 22 RRRRILTLVLLALL 35 (117)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455444443
No 312
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=48.93 E-value=70 Score=27.57 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ 290 (308)
.|..-+.+|+.+++.|+.+...|.++-..+++++..|..
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665555555555443
No 313
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=48.77 E-value=1.1e+02 Score=24.01 Aligned_cols=38 Identities=11% Similarity=-0.022 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 270 EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.+..+.+++.+|+-....+..|...++..+..+...+.
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555555555555566666666666666555544
No 314
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=48.27 E-value=60 Score=32.68 Aligned_cols=43 Identities=9% Similarity=0.007 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 261 E~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
+.+...|+.++..|..++..+..++..+..+...|+.++..|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555555555555555555555555555443
No 315
>PRK14127 cell division protein GpsB; Provisional
Probab=48.16 E-value=53 Score=27.78 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr 293 (308)
++|.++-..+..|..||..|..++..|+.++..+..+-.
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777777777777777777777666666555555443
No 316
>PRK11546 zraP zinc resistance protein; Provisional
Probab=48.15 E-value=92 Score=27.59 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021757 283 QKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 283 qk~~~l~~ENr~Lra~l~~Lra 304 (308)
++...|..|...|+.++.++|.
T Consensus 89 ~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 89 SKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554443
No 317
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=48.11 E-value=40 Score=28.93 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L 274 (308)
|-.|..|+.++|+.++ ++.+++|+.++..|+.+...+
T Consensus 95 E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 95 EYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544444322 245566666666666555544
No 318
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=47.96 E-value=1e+02 Score=26.66 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~ 298 (308)
..+..|+.++...+.....-...+..|++.+..+..+++.+..+
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777888877777888888888888888888877777666
No 319
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=47.77 E-value=67 Score=24.45 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDV 281 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L 281 (308)
+++|+.++..|+.|...+..++..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888777643
No 320
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=47.64 E-value=1.7e+02 Score=24.73 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=18.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 241 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 241 sNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
..++.....-..=....-.++.++..++.+...+..++..|..+|..+.
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443333333333333344444444444444444444444444333
No 321
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=47.57 E-value=1.9e+02 Score=25.07 Aligned_cols=52 Identities=10% Similarity=0.199 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
++|+.|..++++...-......++..++.....+..+=..+..-+..|..|+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777778888888877777777777777777777765
No 322
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=47.55 E-value=2.8e+02 Score=29.12 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021757 263 QAGQLRAEHSSLLKGLTD 280 (308)
Q Consensus 263 qV~~Le~EN~~L~~el~~ 280 (308)
++..++.++..+..++..
T Consensus 68 ~l~~~~~~~~~~~~~~~~ 85 (475)
T PRK10361 68 EVRSLQSINTSLEADLRE 85 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 323
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=47.50 E-value=1.3e+02 Score=26.50 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
..+.+....+..|...-.....+-..+...+..|..|...|..-.+.+..+|+
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 73 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQ 73 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555556666666666667777777778888888888888888888888775
No 324
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.43 E-value=1.7e+02 Score=33.47 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 273 ~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.|..++..++.+++.-..+=..++.++..+++.|+
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~ 514 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATLK 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555543
No 325
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=47.33 E-value=1.1e+02 Score=32.94 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (308)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~ 294 (308)
.+..|+.++.++..-+.+......++.+++.+-.-|.+-+..
T Consensus 98 l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~ 139 (632)
T PF14817_consen 98 LDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQ 139 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555544444443333
No 326
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=47.30 E-value=81 Score=25.75 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 021757 264 AGQLRAEHSSLLKGLTDVNQ--KYDESAVNNRILKADIET 301 (308)
Q Consensus 264 V~~Le~EN~~L~~el~~L~q--k~~~l~~ENr~Lra~l~~ 301 (308)
+..++.+|..|.++++.|.. .......+|...|++.++
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee 64 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333334444443333322 233445667777666554
No 327
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=47.23 E-value=1.5e+02 Score=29.24 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH-------------
Q 021757 231 VDDKRARRMLSNRESARRSRRRKQAHLNELE--------------TQAGQLRAEHSSLLKGLTDVNQ------------- 283 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~RKk~~l~eLE--------------~qV~~Le~EN~~L~~el~~L~q------------- 283 (308)
....++.-+..+-+--++-|.-|+-+|+-|| .++..|+.||..|......|..
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke 94 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH
Confidence 3344444444444444444444444444444 3455566677666655554443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 284 -KYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 284 -k~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
++..++.+....|.+|+.|.+.||
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelk 119 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELK 119 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666665553
No 328
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.16 E-value=2.2e+02 Score=31.23 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 269 ~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
.+...|...-..|.++|..+....+.|..+++.|..
T Consensus 586 e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 586 EERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444433
No 329
>PRK10722 hypothetical protein; Provisional
Probab=47.15 E-value=1.4e+02 Score=28.74 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 231 VDDKRARRMLSNRES------ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (308)
Q Consensus 231 ~e~KR~RR~lsNReS------ArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~L 295 (308)
...+-.-++.+.++- .-|.|.+|.+ ++-+.+++.|+.++..|..++..+++|+..|..=-|.|
T Consensus 141 ~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQ--q~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 141 AQVRPLYQLWRDGQALQLALAEERQRYQKLQ--QSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred hhhhHHHHHHHHhhHHHHhHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777755 6666666654 44468888888889999999988888888887655555
No 330
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=47.04 E-value=2.4e+02 Score=26.11 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
...++.++..|.......-.+...+...+..|..++..|..+|...+.
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555544433
No 331
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=46.91 E-value=1.1e+02 Score=26.91 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 256 HLNELETQAGQLRAEHSSLLKGL------TDV--NQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el------~~L--~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
-+..|+.+++.|+.+...+..++ .+| +..|+....+-..|..+|..|..+|.
T Consensus 12 g~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 12 ARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655555554444 222 23467777777788888888887764
No 332
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=46.81 E-value=1.8e+02 Score=25.04 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGL 278 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el 278 (308)
..++...+..|+.++....+.+
T Consensus 92 ~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 92 NEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555444444443
No 333
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=46.63 E-value=58 Score=27.63 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (308)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~L 295 (308)
=|.-|++|-++|...+.||-.|+.+++-|-|-+..|+.--.+.
T Consensus 68 LQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVF 110 (120)
T KOG3650|consen 68 LQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVF 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhh
Confidence 3467899999999999999999999998888777777655443
No 334
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.63 E-value=1.9e+02 Score=32.57 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021757 282 NQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 282 ~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
+.+...|..|-..|.-++..|.
T Consensus 436 nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333
No 335
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=46.55 E-value=1.2e+02 Score=32.21 Aligned_cols=7 Identities=43% Similarity=1.018 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 021757 114 YRAYLKT 120 (308)
Q Consensus 114 y~a~Lk~ 120 (308)
|..||..
T Consensus 67 y~~~l~~ 73 (650)
T TIGR03185 67 YEQYLRG 73 (650)
T ss_pred HHHHHHH
Confidence 3344433
No 336
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.28 E-value=2e+02 Score=35.12 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021757 284 KYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 284 k~~~l~~ENr~Lra~l~~Lrak 305 (308)
..+.+...++.|-.++..|++.
T Consensus 1513 ~v~elek~~r~le~e~~elQ~a 1534 (1930)
T KOG0161|consen 1513 RVHELEKEKRRLEQEKEELQAA 1534 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 337
>PLN02678 seryl-tRNA synthetase
Probab=46.18 E-value=1.9e+02 Score=29.96 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 021757 237 RRMLSNR 243 (308)
Q Consensus 237 RR~lsNR 243 (308)
++.+++|
T Consensus 19 ~~~l~~R 25 (448)
T PLN02678 19 RESQRRR 25 (448)
T ss_pred HHHHHhh
Confidence 3333333
No 338
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=46.13 E-value=1.3e+02 Score=26.46 Aligned_cols=14 Identities=50% Similarity=0.639 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 021757 291 NNRILKADIETLRA 304 (308)
Q Consensus 291 ENr~Lra~l~~Lra 304 (308)
+|..|+++|+.|++
T Consensus 52 d~eeLk~~i~~lq~ 65 (155)
T PF06810_consen 52 DNEELKKQIEELQA 65 (155)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 339
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=45.88 E-value=2e+02 Score=29.20 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021757 288 SAVNNRILKADIETLRAK 305 (308)
Q Consensus 288 l~~ENr~Lra~l~~Lrak 305 (308)
+..+-+.|+.++..|..+
T Consensus 71 l~~~~~~l~~~~~~~~~~ 88 (425)
T PRK05431 71 LIAEVKELKEEIKALEAE 88 (425)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555555554444
No 340
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.87 E-value=2.2e+02 Score=33.85 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
++|+.++...+.+...+..++..+..++..+.
T Consensus 358 eELee~Lee~eeeLeeleeeleeleeEleelE 389 (1486)
T PRK04863 358 EELEERLEEQNEVVEEADEQQEENEARAEAAE 389 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 341
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=45.77 E-value=90 Score=31.18 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=7.5
Q ss_pred CChHHHHHHHHhhh
Q 021757 109 VDSDEYRAYLKTKL 122 (308)
Q Consensus 109 ~dp~~y~a~Lk~kL 122 (308)
+.-.+|-+.|+.-|
T Consensus 61 ~~~~eYv~~l~kaL 74 (342)
T PF06632_consen 61 MEVEEYVQELKKAL 74 (342)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 34556666666544
No 342
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=45.63 E-value=1.4e+02 Score=23.56 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDV 281 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L 281 (308)
++.|+.+...|+.||..|.-+...+
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666555543
No 343
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.54 E-value=1.6e+02 Score=31.52 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+..++.=+.+++..++.+...+..|+.++...+.|+..|+++...|+.+|
T Consensus 275 ~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 275 VNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556777788888888899999999999999999999999998876
No 344
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=45.37 E-value=44 Score=24.88 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
.....++..|+.||..|..+|..++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667888999999999999988654
No 345
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.30 E-value=82 Score=32.84 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 280 DVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 280 ~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
.++-+.+.+..||..||..+..|+..
T Consensus 301 nlqmr~qqleeentelRs~~arlksl 326 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTELRSLIARLKSL 326 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567888888888887777654
No 346
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=45.23 E-value=15 Score=32.10 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~E 291 (308)
||+..-..+..++...+.+|-.+..++.+|++.+..+..+
T Consensus 80 rk~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~e 119 (133)
T PF06424_consen 80 RKKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSEE 119 (133)
T ss_pred ccchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCHH
Confidence 3334445566677777888888888888888888766543
No 347
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=45.21 E-value=1.3e+02 Score=27.93 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 253 KQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (308)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~el~~L 281 (308)
+.+.+-++|.++...+.+...|..++..|
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 348
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=44.87 E-value=2.1e+02 Score=30.56 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
++++.++..|+.|..-+..+..++...+.+...+..+=..|+.+.+.++.|-+
T Consensus 45 ~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ 97 (618)
T PF06419_consen 45 RQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKK 97 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888888777777776643
No 349
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=44.72 E-value=1.9e+02 Score=28.08 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=7.6
Q ss_pred ChHHHHHHHHhh
Q 021757 110 DSDEYRAYLKTK 121 (308)
Q Consensus 110 dp~~y~a~Lk~k 121 (308)
|-.....+|+++
T Consensus 65 ~~~~~~e~L~Sr 76 (362)
T TIGR01010 65 DTYTVQEYMRSR 76 (362)
T ss_pred cHHHHHHHHhhH
Confidence 444555778776
No 350
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=44.69 E-value=1.3e+02 Score=26.61 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021757 250 RRRKQAHLNELETQAGQLR 268 (308)
Q Consensus 250 R~RKk~~l~eLE~qV~~Le 268 (308)
-++|++||.+|..|...|+
T Consensus 17 I~~K~~~LqEL~~Q~va~k 35 (142)
T PF08781_consen 17 IKKKKEQLQELILQQVAFK 35 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3788899999998877653
No 351
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.67 E-value=2.3e+02 Score=32.82 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHS------------SLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~------------~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..+.+++.++..|..++. .|..++..|..+...+..+-+.|..+|..|+..|
T Consensus 1028 ~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1028 NELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554443 3344444444444444455555555555555544
No 352
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=44.65 E-value=2.1e+02 Score=31.83 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 263 qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
+.+.|..|-..+++++..++.....+.+++..|++++..|++
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456677777788888888888888888888888888888874
No 353
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=44.56 E-value=79 Score=28.50 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 230 SVDDKRARRMLSNRESARRSRRRK-----QAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (308)
Q Consensus 230 ~~e~KR~RR~lsNReSArRSR~RK-----k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk 284 (308)
..+..|.++-++.++-++++|.-- ....++||.-+.-.+.|...+++++..++.+
T Consensus 40 EeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNre 99 (159)
T PF04949_consen 40 EEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRE 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 345566677778888888888522 2334556555555555555555555544433
No 354
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.52 E-value=1e+02 Score=31.24 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 275 LKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 275 ~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..++..+.+.+..+..+-..|+.++..|+..+
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555443
No 355
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=44.44 E-value=2.8e+02 Score=26.19 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=39.1
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 254 QAHLNEL---ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 254 k~~l~eL---E~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
..|+++| ...+..|+.....+..+.....+....+..|=..|+.+|..+|.-
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666 567777777777777777777777777777888888888888765
No 356
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=44.43 E-value=2.3e+02 Score=25.24 Aligned_cols=70 Identities=13% Similarity=0.207 Sum_probs=31.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 236 ~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
.|-.+.+|..+..--..-+.++.....++..|+..+..=..++..+..++..+...-..++.+++.+...
T Consensus 123 vk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~ 192 (236)
T PF09325_consen 123 VKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISEN 192 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544444444444444444444444444322223344455555555555444455555444443
No 357
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=44.42 E-value=1.4e+02 Score=29.59 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL 267 (308)
Q Consensus 230 ~~e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~L 267 (308)
+...+|.-+..+||+-.++-+.++.++...+..++.+|
T Consensus 272 ~~~~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i 309 (387)
T PF07767_consen 272 PKKNKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQI 309 (387)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666778888877777777777665555554443
No 358
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=44.37 E-value=55 Score=26.74 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021757 261 ETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 261 E~qV~~Le~EN~~L~~el~~L~ 282 (308)
..+...|..||+.|..+.....
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~ 50 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAE 50 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555544444333
No 359
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.37 E-value=2e+02 Score=24.60 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 257 LNELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el-------~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
-.+...++..++..+..|..++ +.++.+...+..|...|+.++++|.+.|
T Consensus 67 ~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 67 DLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQL 123 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444 4444554555666666777777776655
No 360
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=44.37 E-value=1.3e+02 Score=24.04 Aligned_cols=52 Identities=15% Similarity=0.322 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTD---VNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~---L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+-+.++..||..|+.....|...+.. |..++..+...=..|..++..++.-|
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777776666655444 66666666666666666666665544
No 361
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.35 E-value=1.5e+02 Score=24.80 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (308)
Q Consensus 239 ~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~L 295 (308)
|=.||.+++-.++-...|--.| .-+.|+..|..++..+..+......+...+
T Consensus 55 msQNRq~~~dr~ra~~D~~inl-----~ae~ei~~l~~~l~~l~~~~~~~~~~~~~~ 106 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINL-----KAEQEIERLHRKLDALREKLGELLERDQER 106 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3467777764333332322222 234466777777777777776666665543
No 362
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=44.32 E-value=60 Score=26.93 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 021757 288 SAVNNRILKADI 299 (308)
Q Consensus 288 l~~ENr~Lra~l 299 (308)
|..||..||.-+
T Consensus 90 L~~E~diLKKa~ 101 (121)
T PRK09413 90 KTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 363
>PHA02675 ORF104 fusion protein; Provisional
Probab=43.65 E-value=1.8e+02 Score=23.91 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 021757 287 ESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 287 ~l~~ENr~Lra~l~~Lrakv 306 (308)
.|+..-..||.-+-.|..|+
T Consensus 62 RLE~H~ETLRk~Ml~L~KKI 81 (90)
T PHA02675 62 RLERHLETLREALLKLNTKI 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34444444555555555544
No 364
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=43.58 E-value=2e+02 Score=24.24 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 263 qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+...|..+...--..|..+.++...|.=.|..|-.+|+.|+..+
T Consensus 27 k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 27 KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555566666667777777777777776543
No 365
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.58 E-value=3.2e+02 Score=28.73 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 021757 295 LKADIETL 302 (308)
Q Consensus 295 Lra~l~~L 302 (308)
|+.+.+.|
T Consensus 111 L~~~F~~L 118 (475)
T PRK10361 111 LSEQFENL 118 (475)
T ss_pred HHHHHHHH
Confidence 33333333
No 366
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=43.48 E-value=80 Score=31.61 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLT 279 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~ 279 (308)
.+|++.|+.++..|+.+...|..++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~ 266 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLE 266 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888887777776644
No 367
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=43.19 E-value=2.7e+02 Score=31.00 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
|...++....++..++.|-+.+..++.++...+.....+-.+|+.+|+.|...+
T Consensus 355 k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 355 KNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555556666666666677777777777777777777776666544
No 368
>PLN03188 kinesin-12 family protein; Provisional
Probab=42.93 E-value=98 Score=36.13 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLR-----------AEHSSLLKGLTD------------------------VNQKYDESAVNNRILKADI 299 (308)
Q Consensus 255 ~~l~eLE~qV~~Le-----------~EN~~L~~el~~------------------------L~qk~~~l~~ENr~Lra~l 299 (308)
..+.-|-.++..|+ .||..|+.+|.+ .++++..++.||..|+++|
T Consensus 1155 ~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~ 1234 (1320)
T PLN03188 1155 KFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQI 1234 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544 448888877652 3467888899999999999
Q ss_pred HHHHHHhC
Q 021757 300 ETLRAKKF 307 (308)
Q Consensus 300 ~~Lrakvk 307 (308)
+.|..|-+
T Consensus 1235 ~klkrkh~ 1242 (1320)
T PLN03188 1235 DKLKRKHE 1242 (1320)
T ss_pred HHHHHHHH
Confidence 99988753
No 369
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=42.84 E-value=2.5e+02 Score=26.42 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 280 DVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 280 ~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
.|+++....+.|-..|++++.+|+
T Consensus 116 ~L~~~k~kqe~e~s~L~k~vtAL~ 139 (229)
T KOG1319|consen 116 FLHKEKKKQEEEVSTLRKDVTALK 139 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666665
No 370
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.82 E-value=2.4e+02 Score=27.91 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
.+|..++..+..+-..|..++..+.++...+..+-..|..++..|+.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555544
No 371
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.79 E-value=83 Score=29.89 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGL 278 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el 278 (308)
.+|..++..+..+...++++.
T Consensus 84 ~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 84 EELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 372
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=42.74 E-value=57 Score=27.66 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
..|..+..+|+.||+-|+-+++.|-
T Consensus 75 ~rlkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466666677776666665543
No 373
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=42.61 E-value=2.2e+02 Score=26.30 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (308)
Q Consensus 244 eSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~L 295 (308)
.+.-|+|-.|.+ ..-..++..|+.++..|..+|...+.|+..|+-=-|.|
T Consensus 114 L~eEr~Ry~rLQ--qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQL 163 (179)
T PF13942_consen 114 LSEERARYQRLQ--QSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQL 163 (179)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 466677777766 66678899999999999999999999988887655555
No 374
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=42.39 E-value=75 Score=28.94 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA---VNNRILK 296 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~---~ENr~Lr 296 (308)
.+++..|+.++..|+.++..|..++..+++.|..|. ..++.|.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~~ 155 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRMA 155 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 477788999999999999999999888888877765 4455444
No 375
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=42.36 E-value=2.6e+02 Score=25.50 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 021757 246 ARRSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQK 284 (308)
Q Consensus 246 ArRSR~RKk~~l~eLE~-------qV~~Le~EN~~L~~el~~L~qk 284 (308)
+.+...+-+.++.-|+. .++.|+.++..+.+++..+.++
T Consensus 25 ~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~ 70 (165)
T PF09602_consen 25 ASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEE 70 (165)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444 4555555555555555544444
No 376
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.33 E-value=1e+02 Score=30.69 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
..|..+|..++.....|..++..+.+....+..+...|...+..|..+.+
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45667777777777777777777777777777777888888888776643
No 377
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.30 E-value=2.2e+02 Score=31.00 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
+..|..++..|+.+...|..++..+.+.+.....++..+..++..+...
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 291 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEEN 291 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666655543
No 378
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.06 E-value=1.5e+02 Score=22.43 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra 297 (308)
+..|..+|.+|..+...|+..+...+. ++..-|.+|-.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~---EAaRAN~RlDN 49 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKE---EAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 445666666666666666655544333 34444444443
No 379
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=42.00 E-value=78 Score=31.67 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~ 298 (308)
+.-.|.++.+.|+.||..|..++. ++..+..||..|+..
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~----~~e~l~~En~~Lr~l 96 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLK----SYEEANQTPPLFSEI 96 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 334555555555555555554443 244556777766643
No 380
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=41.86 E-value=1.6e+02 Score=24.52 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=21.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 240 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (308)
Q Consensus 240 lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk 284 (308)
..-||.|+.-..=++...+.|+.--+.|..|...-.++|..|.++
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556665554444444444444444444444455555554443
No 381
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=41.80 E-value=1.8e+02 Score=28.45 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTD 280 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~ 280 (308)
+.+|+.+++.++.+...+..++..
T Consensus 36 ~~~l~~~~~~~~~~~~~~~~~~~~ 59 (378)
T TIGR01554 36 KEELETDVEKLKEEIKLLEDAIAD 59 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444443
No 382
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=41.77 E-value=1.2e+02 Score=27.32 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE-SAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~-l~~ENr~Lra~l~~Lrakv 306 (308)
..|+.|+..++.|......+...+..+..++-. +..+=..|..++..|..-+
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~ 131 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIV 131 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888887777777777666555433 2223556666666665443
No 383
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.71 E-value=2e+02 Score=25.26 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 021757 296 KADIETL 302 (308)
Q Consensus 296 ra~l~~L 302 (308)
+..|..|
T Consensus 158 ~~~i~~l 164 (177)
T PF13870_consen 158 RKEIKEL 164 (177)
T ss_pred HHHHHHH
Confidence 3333333
No 384
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=41.41 E-value=1.5e+02 Score=31.48 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=53.8
Q ss_pred cccCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 225 IEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 225 ~~~~d~~e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
++...+.+--|.+|+... -..+..|-.+.+.+.+..+..-+.+-..|--.+...+.++..+..+|+.++.+.+.|+.
T Consensus 22 l~~g~e~ef~rl~k~fed---~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~ 98 (604)
T KOG3564|consen 22 LGEGNEDEFIRLRKDFED---FEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLET 98 (604)
T ss_pred hcCccHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333344455555555432 22333334455555666666677777778888888888899999999999999999988
Q ss_pred HhC
Q 021757 305 KKF 307 (308)
Q Consensus 305 kvk 307 (308)
+++
T Consensus 99 ~i~ 101 (604)
T KOG3564|consen 99 QIQ 101 (604)
T ss_pred HHH
Confidence 875
No 385
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.40 E-value=2.7e+02 Score=32.13 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
...+.|.-++++|+.+...+..++..+..++..+..++..|++.+...
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345566667777777777777777777777777777777776665543
No 386
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=41.39 E-value=98 Score=31.34 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021757 281 VNQKYDESAVNNRILKADI 299 (308)
Q Consensus 281 L~qk~~~l~~ENr~Lra~l 299 (308)
|+++...+..+-..|..++
T Consensus 81 l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 81 LKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 387
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.33 E-value=2.7e+02 Score=25.08 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~L 295 (308)
+.+..++.++..|+.....|..++..++.+...+......-
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455554444445555554444444444444333
No 388
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=41.24 E-value=1.5e+02 Score=31.33 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDV---N----QKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L---~----qk~~~l~~ENr~Lra~l~~Lra 304 (308)
..++.||.++..|+.+...|..++..- . .++..+..+=..++.+++.|..
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEM 619 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888887777776666421 1 1344444555555555555443
No 389
>PHA03162 hypothetical protein; Provisional
Probab=41.08 E-value=35 Score=30.00 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021757 278 LTDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 278 l~~L~qk~~~l~~ENr~Lra~l 299 (308)
+++|..++..|..||+.||.+|
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667777777777776
No 390
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=40.99 E-value=61 Score=24.82 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSL 274 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L 274 (308)
.++..|+..|..|+.|...+
T Consensus 3 ~qv~s~e~~i~FLq~eH~~t 22 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQT 22 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776653
No 391
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=40.94 E-value=9 Score=40.98 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 021757 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE---SAVNNRILKADIETLRAK 305 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~---l~~ENr~Lra~l~~Lrak 305 (308)
++|.+-+.+|..+|..|+..|..|..+...|..++.. +..+...++.++..|..+
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~ 378 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQK 378 (713)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888889999998888887777766655544 333444444444444433
No 392
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=40.88 E-value=1.3e+02 Score=22.68 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSL 274 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L 274 (308)
.+|++.+.-+.+++.|-..+
T Consensus 32 ~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 32 RDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 45566666666666655554
No 393
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.78 E-value=2.5e+02 Score=28.53 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
++.++.|....+.|+.--.+|..-.+.|......|+.+-..|+.++.-|..|+
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555554
No 394
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=40.75 E-value=2e+02 Score=23.35 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV---NQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 242 NReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L---~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
|+.++.+.-.=+ .-+.+|+..+..|...+..|...+..+ ..+...|+.==..|-.-...|..|+|
T Consensus 30 N~~~~~kY~~~~-~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 30 NKATSLKYKKMK-DIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444432222 335666777777766666655444443 44777777777777777777777775
No 395
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=40.69 E-value=2.3e+02 Score=28.88 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 263 QAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 263 qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
++..++.+...|..++..|++++..+.
T Consensus 100 ~l~~~e~~~~~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 100 ALDQANRQQAALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444443
No 396
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.66 E-value=1.8e+02 Score=31.90 Aligned_cols=59 Identities=22% Similarity=0.180 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
=+.++..-=|.+++..+.++.+++.....+..++..+.++...+..|+..|+..++.++
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555566777777888888888888888888888888888888888887777654
No 397
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=40.61 E-value=2.4e+02 Score=24.35 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLL 275 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~ 275 (308)
+..+..++..|+..+..|.
T Consensus 57 ~~~~~~~~~~l~~~~~kl~ 75 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 398
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=40.58 E-value=1.6e+02 Score=24.57 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 263 qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
|+..+-.-|+.|...-..|++++..|..-+..|...|..
T Consensus 58 Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 58 QSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555667777777788888888999999988888753
No 399
>PHA03155 hypothetical protein; Provisional
Probab=40.57 E-value=37 Score=29.13 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021757 279 TDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lra~l 299 (308)
++|..++..|..||+.||.++
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666665
No 400
>PHA03161 hypothetical protein; Provisional
Probab=40.52 E-value=2.7e+02 Score=24.97 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQ 283 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~q 283 (308)
.+++..|..|..+.....+++..|..
T Consensus 57 ~~i~~~v~~l~~~I~~k~kE~~~L~~ 82 (150)
T PHA03161 57 KSIEGMLQAVDLSIQEKKKELSLLKA 82 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555554443
No 401
>PF15556 Zwint: ZW10 interactor
Probab=40.29 E-value=3.4e+02 Score=25.94 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 273 ~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.|...-.+++++......|-..|.+++++|+.++
T Consensus 138 ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa 171 (252)
T PF15556_consen 138 HLAEVSAEVRERQTGTQQELERLYQELGTLKQQA 171 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566677777777777777777777654
No 402
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.25 E-value=60 Score=31.75 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
++.-=..++..|.+|+.++..|+.+......+...|.
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~ 269 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELE 269 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555555555444444443333
No 403
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=40.12 E-value=63 Score=27.76 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLL 275 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~ 275 (308)
..+.+|+.++..|+.||.-|+
T Consensus 74 ~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 74 EQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666665553
No 404
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.12 E-value=1.8e+02 Score=27.73 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=28.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 237 RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
|-.++-|+-++---.+|.+++..+ +.+...|..++..+..+.... |+.||++++.-
T Consensus 152 K~vlk~R~~~Q~~le~k~e~l~k~-------~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf 207 (243)
T cd07666 152 MGVIKRRDQIQAELDSKVEALANK-------KADRDLLKEEIEKLEDKVECA---NNALKADWERW 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 345555555555555554444443 333344445555555544444 55576666543
No 405
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=40.11 E-value=1.5e+02 Score=29.52 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (308)
Q Consensus 249 SR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra 297 (308)
-|++..+.+++|+.+...|..+|...+..|..|..++..+..-=.-|+.
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~ 150 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQE 150 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3667777888999999999999998888888888887766554444433
No 406
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=39.90 E-value=9.6 Score=36.20 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~L 295 (308)
-.|+++..++..|+.-...|..+++.|+++...|..||..|
T Consensus 122 T~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 122 TRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666777666
No 407
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=39.81 E-value=1.1e+02 Score=32.17 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDV---N---QKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L---~---qk~~~l~~ENr~Lra~l~~Lra 304 (308)
++.||.++..|+.+...|..++..- . .++..+..+=..++.+++.|..
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFE 623 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999988888887777532 1 1555666666666666666554
No 408
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=39.78 E-value=1.5e+02 Score=28.22 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021757 283 QKYDESAVNNRILKADIETL 302 (308)
Q Consensus 283 qk~~~l~~ENr~Lra~l~~L 302 (308)
+....|..-|+.||++++.+
T Consensus 235 eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 235 EEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34445556677777776654
No 409
>PRK14011 prefoldin subunit alpha; Provisional
Probab=39.65 E-value=1.7e+02 Score=25.79 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 021757 295 LKADIETL 302 (308)
Q Consensus 295 Lra~l~~L 302 (308)
|+++++.+
T Consensus 125 L~~k~~~~ 132 (144)
T PRK14011 125 LEKRAQAI 132 (144)
T ss_pred HHHHHHHH
Confidence 33333333
No 410
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.53 E-value=1.8e+02 Score=26.40 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021757 283 QKYDESAVNNRILKADIE 300 (308)
Q Consensus 283 qk~~~l~~ENr~Lra~l~ 300 (308)
+++..|..++..|+.+++
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 411
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=39.44 E-value=2.6e+02 Score=25.57 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
+.-=++|++++++.+.+...++.+..+|..++...+
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344556666666666666666666666555443
No 412
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=39.34 E-value=1.6e+02 Score=30.74 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQ--------------LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 252 RKk~~l~eLE~qV~~--------------Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
=|++|-++|+.++.. ...+.+.+..+|+-|.++|...--||..|-+.+++-+.
T Consensus 390 MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerq 456 (593)
T KOG4807|consen 390 MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQ 456 (593)
T ss_pred HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777665433 23344556667777777777776777666665554443
No 413
>PF14282 FlxA: FlxA-like protein
Probab=39.24 E-value=1.2e+02 Score=25.06 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 021757 258 NELETQAGQLR 268 (308)
Q Consensus 258 ~eLE~qV~~Le 268 (308)
..|..++..|.
T Consensus 29 ~~Lq~ql~~l~ 39 (106)
T PF14282_consen 29 KQLQEQLQELS 39 (106)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 414
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.13 E-value=43 Score=33.83 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~ 286 (308)
+.-.|..+-..|+.||+.|+.+++.|.....
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567888888999999999999988866555
No 415
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=38.99 E-value=2e+02 Score=22.93 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+-+..|+..-..|..-|.....++..+...|..=..-=..+|.+++....||+
T Consensus 22 ~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir 74 (88)
T PF10241_consen 22 QTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIR 74 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777776666666667777776666653
No 416
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=38.83 E-value=1.9e+02 Score=22.55 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~ 286 (308)
++.+..++..|...-..|..++..+..++.
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLK 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 417
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.75 E-value=4.2e+02 Score=27.28 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 259 eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
+|..-...+..+...|..++..+.++...+..+=..|+.++..|.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555555555555555555555555555555555543
No 418
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=38.53 E-value=1.8e+02 Score=26.67 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021757 284 KYDESAVNNRILKADIETLR 303 (308)
Q Consensus 284 k~~~l~~ENr~Lra~l~~Lr 303 (308)
+...+..+-..|+.+|...+
T Consensus 154 ~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 154 KREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555444
No 419
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=38.52 E-value=1.4e+02 Score=23.49 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (308)
Q Consensus 260 LE~qV~~Le~EN~~L~~el~~L~qk~~~l~~EN 292 (308)
|...|..|..|+..|..++..+++++..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666655554444
No 420
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=38.50 E-value=1.4e+02 Score=36.10 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
|..+.+.-..+.+|..++..|+.+...|...+..|..++....+++..|+.+......+
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R 1293 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQR 1293 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777777766666666666666666666666666555555444433
No 421
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=38.41 E-value=1.6e+02 Score=30.76 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=29.8
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 254 QAHLNELE----------TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 254 k~~l~eLE----------~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
++|+++|+ .+..+-.-||..|...++.-++.+..-..||..|.+.-+.|.
T Consensus 417 rQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELn 476 (593)
T KOG4807|consen 417 RQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELN 476 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 35666655 345555667888887777666555555555555554444443
No 422
>PRK11239 hypothetical protein; Provisional
Probab=38.25 E-value=56 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~ 285 (308)
+..|+.+|..|+.|...|+.++..|..++
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688888888888888888888776654
No 423
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.00 E-value=3.3e+02 Score=31.52 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=30.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 241 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL---TDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 241 sNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el---~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
+..+..+.-+.+++..+..|+.++..+..+...|...+ ..|..++..+..++..|+..+..+..
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~ 909 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666555555444444333222 23344444444444444444444433
No 424
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=37.86 E-value=74 Score=26.96 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDV 281 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L 281 (308)
+...|+++-+-|+-++.-|...|+..
T Consensus 80 k~~~LeEENNlLklKievLLDMLtet 105 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLAET 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668888888888888888877653
No 425
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=37.86 E-value=2.2e+02 Score=25.51 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
.|...|+.++..++.++..|...+.....++......=..+..+|...
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~ 126 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVC 126 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 445555555555555555555555544444444444333333333333
No 426
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=37.71 E-value=3.3e+02 Score=28.39 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lr 296 (308)
+.+..|..+...|+.+...|..+-..|..+.+.|.++-+.|.
T Consensus 137 Q~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 137 QELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444
No 427
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=37.69 E-value=2.4e+02 Score=34.58 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=47.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 239 ~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
...-.+.+++++.-=++++..++.++..|+.|+.+|...+..+......+..|...+...+..+.
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 33467788888888888888888888888888888887777776666666666666666655554
No 428
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=37.52 E-value=1.4e+02 Score=26.34 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 283 QKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 283 qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
..|+....+-..|..+|..|+.+|+
T Consensus 45 aeY~aak~~~~~le~rI~~L~~~L~ 69 (156)
T TIGR01461 45 ADYQYGKKRLREIDRRVRFLTKRLE 69 (156)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777778888888888887765
No 429
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.46 E-value=3e+02 Score=27.80 Aligned_cols=52 Identities=10% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHS--------SLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~--------~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+.+++.|.++..++.+|. .+..++..+++++..+..+-..+++++..|++++
T Consensus 175 ~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 175 KKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555554443 2446666666777777766666666666666654
No 430
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.27 E-value=2.1e+02 Score=27.43 Aligned_cols=6 Identities=33% Similarity=0.412 Sum_probs=2.2
Q ss_pred HHHHHH
Q 021757 269 AEHSSL 274 (308)
Q Consensus 269 ~EN~~L 274 (308)
.||..|
T Consensus 98 ~EN~rL 103 (283)
T TIGR00219 98 QENVRL 103 (283)
T ss_pred HHHHHH
Confidence 333333
No 431
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.22 E-value=3.3e+02 Score=31.89 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=10.5
Q ss_pred CCcchhHHHHHHhhhh
Q 021757 32 RSQSEWELEKFLQEVT 47 (308)
Q Consensus 32 rs~SEW~FqkfLeE~~ 47 (308)
=|.=+-.||++.....
T Consensus 159 SCsV~vhFq~iiD~~~ 174 (1293)
T KOG0996|consen 159 SCSVEVHFQKIIDKPG 174 (1293)
T ss_pred ceeEEEeeeeeeccCC
Confidence 3666777877775543
No 432
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.81 E-value=1e+02 Score=26.55 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~E 291 (308)
.+++.||.+|..|+..-..|..++..|+..+..+-..
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3457778888888888888888888887777765443
No 433
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=36.77 E-value=4.1e+02 Score=25.94 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
.++..+.+++.++.+.....+++.+++++.......=..|+.+-..|...
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~ 250 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKT 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555566666666655555555555554444443
No 434
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.76 E-value=3.1e+02 Score=28.92 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHH-----------------HHHH--HH-----------------HHHHHHHHHHHHHHH-
Q 021757 231 VDDKRARRMLSNRESARRSRRR-----------------KQAH--LN-----------------ELETQAGQLRAEHSS- 273 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~R-----------------Kk~~--l~-----------------eLE~qV~~Le~EN~~- 273 (308)
-++.|.-++..|++|++.-|.= |++| +. .+..+|..|+.+...
T Consensus 409 l~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E 488 (521)
T KOG1937|consen 409 LEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVE 488 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHH
Confidence 3567777899999999977631 1222 11 122334444443322
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 274 ----LLKGLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 274 ----L~~el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
....++.|.+.|+.+..+|..|..+|.
T Consensus 489 ~~k~~l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 489 EQKQYLKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566777888888888888887764
No 435
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.72 E-value=29 Score=36.28 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLT 279 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~ 279 (308)
.|++|++|+++|+.+...|..++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccc
Confidence 455555555555555544444443
No 436
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.63 E-value=3.3e+02 Score=31.49 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 250 R~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
+...+..+++|+.+....-.+...|...+.+..-+...+..+|..|+.++..|
T Consensus 413 e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 413 ENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444443
No 437
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=36.48 E-value=3.1e+02 Score=31.71 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 021757 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL--------------KGLTDVNQKYDESAVNNRILKAD 298 (308)
Q Consensus 233 ~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~--------------~el~~L~qk~~~l~~ENr~Lra~ 298 (308)
.+..+-.+.||+--..--.++-..++++-.+.-.|+.++..|. +++..++.....|..|+..|...
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e 451 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEE 451 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888776655555555555555555555555444444 44444444444455555555554
Q ss_pred HHHHH
Q 021757 299 IETLR 303 (308)
Q Consensus 299 l~~Lr 303 (308)
+.+++
T Consensus 452 ~~t~~ 456 (1195)
T KOG4643|consen 452 TSTVT 456 (1195)
T ss_pred HHHHH
Confidence 44443
No 438
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.45 E-value=1.9e+02 Score=29.18 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 270 EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
.-..|...+..+.+++..+..+-..|+.+++.+
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666666666677777777777776665
No 439
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=36.44 E-value=17 Score=19.55 Aligned_cols=7 Identities=29% Similarity=0.743 Sum_probs=5.4
Q ss_pred CCCCCCC
Q 021757 12 DSFLSSP 18 (308)
Q Consensus 12 ~~fW~~p 18 (308)
.|||.+|
T Consensus 2 kpfw~pp 8 (12)
T PF08248_consen 2 KPFWPPP 8 (12)
T ss_pred CccCCCC
Confidence 4899876
No 440
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=36.31 E-value=3.3e+02 Score=28.41 Aligned_cols=60 Identities=23% Similarity=0.209 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 246 ARRSRRRKQAHLNELETQ-----AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 246 ArRSR~RKk~~l~eLE~q-----V~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
|-+-+..=+++++.||++ +.+|..|-..|..+-..|-+++..+..++..|--++.+++.+
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666777777753 455666666666666666777777777777777776666654
No 441
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.21 E-value=91 Score=30.15 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~ 285 (308)
+.+|+.|+..|+.+..+|.. +++++.+.
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~ 85 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQN 85 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHH
Confidence 46667777777666666665 44444333
No 442
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.00 E-value=87 Score=22.67 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~ 282 (308)
+-|..=.+.|..||..|.+++.+|+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788888888888887765
No 443
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=35.96 E-value=2.1e+02 Score=28.50 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAV--NNRILKADIETL 302 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~--ENr~Lra~l~~L 302 (308)
..+...+..|+.+...+..++..+++++..+.. .+.-+.++++-|
T Consensus 89 ~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyL 135 (372)
T PF04375_consen 89 KQQQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYL 135 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHH
Confidence 344445555666666666666666666665543 333355555544
No 444
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.81 E-value=4.4e+02 Score=25.92 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=3.3
Q ss_pred HHHHHhh
Q 021757 39 LEKFLQE 45 (308)
Q Consensus 39 FqkfLeE 45 (308)
++.||..
T Consensus 12 L~dFL~~ 18 (312)
T smart00787 12 LQDFLNM 18 (312)
T ss_pred HHHHHHH
Confidence 4445544
No 445
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=35.66 E-value=4.6e+02 Score=26.13 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKY 285 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~ 285 (308)
+.||.++.+|+.||--|..+|.+...+.
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999888766544
No 446
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=35.57 E-value=2.2e+02 Score=28.95 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 231 VDDKRARRMLSNRESARRSRRRK---------QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~RK---------k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~ 301 (308)
.++|-++-|.+| ||.=-.|- |-.|++++.++..-..||..+.+++..++.-+..|...-..||+.|..
T Consensus 124 veekykkaMvsn---aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 124 VEEKYKKAMVSN---AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHH---HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777 33222221 355788888888888888888888888888888888888888776654
No 447
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=35.55 E-value=2.8e+02 Score=23.71 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 021757 258 NELETQAGQL 267 (308)
Q Consensus 258 ~eLE~qV~~L 267 (308)
.++..++..|
T Consensus 54 ~~i~~~l~~L 63 (141)
T PF13874_consen 54 KEINDKLEEL 63 (141)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 448
>KOG2260 consensus Cell division cycle 37 protein, CDC37 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.43 E-value=4e+02 Score=27.20 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH------HHHHHHHHHHHHHHHhCC
Q 021757 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTD--------VNQKYDESAV------NNRILKADIETLRAKKFF 308 (308)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~el~~--------L~qk~~~l~~------ENr~Lra~l~~Lrakvkm 308 (308)
..+++.+++|..++...+.-+..+...+.. +..+.....+ +|..++..++.|..+.|+
T Consensus 43 ~~~~q~~eei~k~~~~~~~ll~e~~e~l~~l~~~~~s~~~~E~~k~e~~~~ei~~~e~~~~~~eeL~k~ek~ 114 (372)
T KOG2260|consen 43 AERKQEQEEIKKSKDMYSRLLEEVQEILSNLEVSSLSGLKKELEKFETVDSEIREGEAWEDKLEELEKKEKK 114 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhHHHHHHHhcccccccccchHHHHHHHHHHHHHhh
Confidence 344566777777777766666666655553 4455555666 789999999999888664
No 449
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=35.40 E-value=1.7e+02 Score=23.15 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021757 283 QKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 283 qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
+++..|..+++..++-+..++.+
T Consensus 59 ~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 59 EEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444
No 450
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=35.28 E-value=1.7e+02 Score=33.19 Aligned_cols=50 Identities=14% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
+.+|..|..++..|+.|.+.|...+..++.+.....+|=..+.+++..|.
T Consensus 105 ~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le 154 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLE 154 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34456666666666666666666666666666555555555555444443
No 451
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=35.25 E-value=4.6e+02 Score=29.11 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 248 RSRRRKQAHLNELETQAGQLRAEHSSLLK-------GLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~Le~EN~~L~~-------el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
++|.+-...+..|.....+|+.+...-.. ++....+.+.....+-..|+.++.
T Consensus 507 ~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~ 566 (739)
T PF07111_consen 507 RAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELT 566 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45555555555566555555555544443 344444444444444444444443
No 452
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=35.23 E-value=98 Score=27.25 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 021757 259 ELETQAGQLRAEHS 272 (308)
Q Consensus 259 eLE~qV~~Le~EN~ 272 (308)
+|..++.+|+.|.+
T Consensus 44 ~l~~Ei~~l~~E~~ 57 (161)
T PF04420_consen 44 QLRKEILQLKRELN 57 (161)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 453
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=35.19 E-value=2.7e+02 Score=24.06 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=42.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 021757 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN---------QKYDESAVNNRILKADIE 300 (308)
Q Consensus 235 R~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~---------qk~~~l~~ENr~Lra~l~ 300 (308)
..-.+|-|.|.||--+.|..+ +.++.++..+..-...+...+..+. .+|..|..+...++.+|+
T Consensus 34 ae~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~ 106 (126)
T PF09403_consen 34 AEYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLD 106 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888887777665 5777777777666666655555443 567777777666655554
No 454
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=35.16 E-value=1.8e+02 Score=28.21 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=3.8
Q ss_pred CCCCCchh
Q 021757 136 VKPEDKSS 143 (308)
Q Consensus 136 ~~~~~~~~ 143 (308)
+.+.|...
T Consensus 110 lyGsDF~~ 117 (289)
T COG4985 110 LYGSDFIA 117 (289)
T ss_pred hccchHHH
Confidence 44445544
No 455
>PF14645 Chibby: Chibby family
Probab=35.11 E-value=1.9e+02 Score=24.56 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l 299 (308)
...|..+..+|+.||+-|+-++..|-.=+....+|-..+..++
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456678888888888888888877766666666665555544
No 456
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=35.09 E-value=2.9e+02 Score=26.41 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 243 RESARRSRRRKQAHL----NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (308)
Q Consensus 243 ReSArRSR~RKk~~l----~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra 297 (308)
-+|+-..-+||.-+. ..++.+++.|+.++..|..++.+++.++......|..+++
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ 227 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEERE 227 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 366777777775443 4577788888888888888888888887766655555443
No 457
>PRK15396 murein lipoprotein; Provisional
Probab=35.04 E-value=2.3e+02 Score=22.59 Aligned_cols=43 Identities=9% Similarity=0.177 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~ 298 (308)
.++.|..+|+.|..+...|......++........|-.+-.++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~R 68 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQR 68 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777776666666666666666555544443333333
No 458
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=34.93 E-value=53 Score=30.43 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 268 e~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+..+.+|......|+.+|..|..+|+.|+.++..|++.+
T Consensus 104 RwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~ 142 (198)
T KOG0483|consen 104 RWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAEL 142 (198)
T ss_pred cccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 334445566666666666666666666666666666544
No 459
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=34.84 E-value=1.8e+02 Score=31.41 Aligned_cols=49 Identities=27% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTD----------------------------VNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~----------------------------L~qk~~~l~~ENr~Lra~l~~L 302 (308)
+..+..|+..+..|+.++..|..+|.. -...+..|..||..|++++..|
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 460
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=34.84 E-value=1.4e+02 Score=31.91 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~ 298 (308)
.-.+.||.+|+.+=.+.+.|+..+..+..+++.++.+=..++.+
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66788888888777777777777776666666666555555443
No 461
>PF13166 AAA_13: AAA domain
Probab=34.81 E-value=4.6e+02 Score=27.66 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+..+...+..+..+...+...+..+..+...+..+-..++.++..|++++
T Consensus 405 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 454 (712)
T PF13166_consen 405 IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL 454 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555556555566666666666554
No 462
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=34.59 E-value=94 Score=31.96 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=5.2
Q ss_pred HHHHHHHHhhH
Q 021757 234 KRARRMLSNRE 244 (308)
Q Consensus 234 KR~RR~lsNRe 244 (308)
+-+.+++..|.
T Consensus 162 ~vQ~~L~~~Rl 172 (475)
T PF10359_consen 162 RVQIELIQERL 172 (475)
T ss_pred hHHHHHHHHHH
Confidence 33445555543
No 463
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.46 E-value=1.2e+02 Score=28.53 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
-|+..++-+|.++..|+.--.++..++.-|+++-.++...|+.-..++..+
T Consensus 131 AKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~f 181 (210)
T KOG1691|consen 131 AKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWF 181 (210)
T ss_pred HhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 456889999999999999999999999999999999999999988887765
No 464
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=34.44 E-value=2.4e+02 Score=24.03 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Q 021757 286 DESAVNNRILKADIETLRAKKFF 308 (308)
Q Consensus 286 ~~l~~ENr~Lra~l~~Lrakvkm 308 (308)
+.+..+=..|+.++..|+.++++
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk~kr 108 (108)
T COG3937 86 DELTERVDALERQVADLENKLKR 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555556667777777766654
No 465
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=34.39 E-value=2.1e+02 Score=23.73 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 258 NELETQAGQLRAEHSSLLKGL-TDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el-~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..++..+..++.|...|...| ...+.-......+...+..+...|+.++
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l 60 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQL 60 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444 3333333444444445555555555443
No 466
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.16 E-value=2.4e+02 Score=30.24 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 233 DKRARRMLSNRESARRSRRRKQAHLNELE-----------------------TQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (308)
Q Consensus 233 ~KR~RR~lsNReSArRSR~RKk~~l~eLE-----------------------~qV~~Le~EN~~L~~el~~L~qk~~~l~ 289 (308)
..+...+-.....|+.-|...+..+..|+ ..+..|+.+-..|..++..+..+|..-.
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~h 315 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANH 315 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 021757 290 VNNRILKADIETLRAKKF 307 (308)
Q Consensus 290 ~ENr~Lra~l~~Lrakvk 307 (308)
-+=..|+++++.|+++++
T Consensus 316 P~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIR 333 (754)
T ss_pred HHHHHHHHHHHHHHHHHH
No 467
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=33.96 E-value=3e+02 Score=24.11 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (308)
Q Consensus 263 qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lra 304 (308)
+...++.+.......+..++.++..+..+...|+.....|+.
T Consensus 92 ~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 92 ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444443
No 468
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.81 E-value=4e+02 Score=31.30 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 249 SR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
+-.+++..+.+|+..+..+..|..+..+.+..+.+....+...-..|++++++++
T Consensus 536 ~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 536 SLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444443
No 469
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.77 E-value=4.3e+02 Score=31.09 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 021757 230 SVDDKRARRMLSNRESARRSRRRKQ-----AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL---KADIET 301 (308)
Q Consensus 230 ~~e~KR~RR~lsNReSArRSR~RKk-----~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~L---ra~l~~ 301 (308)
....|...-.+.-+.+-.-.-.|++ ....+.+.++..++.+...|..++..+..++..+...|..+ ..++..
T Consensus 464 ~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~ 543 (1317)
T KOG0612|consen 464 EEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNS 543 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHh
Q 021757 302 LRAKK 306 (308)
Q Consensus 302 Lrakv 306 (308)
|+.+|
T Consensus 544 ~rk~l 548 (1317)
T KOG0612|consen 544 LRKQL 548 (1317)
T ss_pred HHHHH
No 470
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.76 E-value=1.5e+02 Score=31.50 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 243 RESARRSRRRKQAHLNELETQAGQLRAE 270 (308)
Q Consensus 243 ReSArRSR~RKk~~l~eLE~qV~~Le~E 270 (308)
+-.++....-+++.+++++++|+.|+..
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 3334444444456788888888888775
No 471
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.71 E-value=5.3e+02 Score=27.41 Aligned_cols=77 Identities=9% Similarity=0.110 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 231 VDDKRARRMLSNRESARRSRRRK---QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~RK---k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
.+.......+.+....-.-+.++ ...+..|..++..++.+...+..++..+.+++..+..+-..|+.++..++.+..
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 473 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKI 473 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=33.66 E-value=2.1e+02 Score=30.38 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
..+...+.+...+..|+..|..++....++...+..+.+.+...+..|+..+
T Consensus 427 ~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 427 SQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=33.57 E-value=1.2e+02 Score=29.75 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+|.+|+.++..-+..+.+|+.....|...+..|..+-......|--|+.+||
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lk 288 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLK 288 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
No 474
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=33.49 E-value=1.3e+02 Score=29.14 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l 299 (308)
+..|+.++..|+.||..|+.++..++.+......=...+-..+
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=33.32 E-value=3.3e+02 Score=23.84 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
...++.....+......+..+..+|..|......-...-..|+..+....+.+
T Consensus 25 ~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l 77 (135)
T TIGR03495 25 RADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALL 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=33.29 E-value=2.2e+02 Score=34.68 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 021757 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKFF 308 (308)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvkm 308 (308)
+|-.=.|=+.++..|..++..+..+...+...+..|..++..+..||+.|++++-.|.+.|.|
T Consensus 431 qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~ 493 (1822)
T KOG4674|consen 431 QRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNV 493 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=33.14 E-value=1.1e+02 Score=29.73 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (308)
Q Consensus 234 KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~ 285 (308)
|..|+++.+....=+.+.-.-..|..||+++..++.++.....+|..++.+.
T Consensus 144 R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~ 195 (271)
T PF13805_consen 144 RDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQK 195 (271)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
No 478
>PRK11546 zraP zinc resistance protein; Provisional
Probab=33.04 E-value=2.1e+02 Score=25.35 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN-------RILKADIETLRAKK 306 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~EN-------r~Lra~l~~Lrakv 306 (308)
.+....++.-.+....+-..|+.++-.-+.+++.|..-+ +.|..+|..|+.++
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
No 479
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=32.76 E-value=17 Score=32.63 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 021757 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKFF 308 (308)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvkm 308 (308)
..|..+|..|..||..|+.++....+++..-..+.-.|-.++..|+-.+-+
T Consensus 25 qkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~ 75 (181)
T PF09311_consen 25 QKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSI 75 (181)
T ss_dssp HHHHT----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHh
No 480
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=32.63 E-value=4.6e+02 Score=25.20 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL----------LKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 233 ~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L----------~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
.++...+.......+.....-++.+..++.++..++.+.... ..++...+.++..+..+-..+++++..+
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 222 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVL 222 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHh
Q 021757 303 RAKK 306 (308)
Q Consensus 303 rakv 306 (308)
+..+
T Consensus 223 ~~~l 226 (423)
T TIGR01843 223 KRQI 226 (423)
T ss_pred HHHH
No 481
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=32.60 E-value=2.1e+02 Score=27.58 Aligned_cols=51 Identities=10% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhC
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN---RILKADIETLRAKKF 307 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~EN---r~Lra~l~~Lrakvk 307 (308)
++.|+.++.+|..+. .....++..|.+++..+...| +.|..++..|..-++
T Consensus 12 ~e~l~~~~~~l~~~~---~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 12 KEQLEKFEKRLEESF---EQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
No 482
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=32.49 E-value=2.9e+02 Score=27.66 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
++.+..+-..+..|..+|..|..++..|++....+..+...+-..-+.+...|
T Consensus 129 ~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 129 RELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.43 E-value=5.3e+02 Score=25.90 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021757 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 231 ~e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakv 306 (308)
.+.|..=.++.+-.+-..-|..+.+ .-|-.|+..|..+...+..++..++++|..+..-...+..++..|..++
T Consensus 237 ~~~~~~L~kl~~~i~~~lekI~sRE--k~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeL 310 (359)
T PF10498_consen 237 PETKSQLDKLQQDISKTLEKIESRE--KYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEEL 310 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
No 484
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=32.26 E-value=2.2e+02 Score=30.17 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-NNRILKADIETLRAKKFF 308 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~-ENr~Lra~l~~Lrakvkm 308 (308)
++.+++|+.+++.++.+.+.+.+++..+..++..+.. -...|..+........++
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 269 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKF 269 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 485
>PRK14158 heat shock protein GrpE; Provisional
Probab=32.26 E-value=1.6e+02 Score=27.17 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 259 eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+.+.++..|+.+...|..++.+++.+|..+..|..-+|.+++.=+..++
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~ 85 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL 85 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=32.14 E-value=2.3e+02 Score=21.56 Aligned_cols=51 Identities=6% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+.++++++..++..-..+..++..|.+.....+.+=..+..++..|..-.|
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=32.02 E-value=5.3e+02 Score=28.33 Aligned_cols=74 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 232 e~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
..|-.+.+.+=|+|-+.-=.--+..-++|..+++++.....+|++.+..-+.++..|..+=..-+-++++|+++
T Consensus 77 ~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 77 IGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 488
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=31.90 E-value=2.1e+02 Score=30.03 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
..|++.|...+.+....-..+......+.++...+..+-..|+-++..|.++.|
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr 484 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTR 484 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
No 489
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.85 E-value=1.9e+02 Score=30.38 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKKF 307 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrakvk 307 (308)
+.|+..|..+|..|+ ..|...-...+.++..+..|-+..+.+.+.|++||+
T Consensus 252 ~~hi~~l~~EveRlr---t~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~ 302 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLR---TYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLI 302 (552)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 490
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.81 E-value=2.9e+02 Score=30.43 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (308)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lrak 305 (308)
.|.+......-.+++.-+..|+.+...+..+...+.+....+....+.|+.+.+.|+.+
T Consensus 500 ~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=31.71 E-value=87 Score=29.75 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (308)
Q Consensus 271 N~~L~~el~~L~qk~~~l~~ENr~Lra~l~~Lr 303 (308)
++.|..+.....+.+..|..||..|+++++.|.
T Consensus 107 i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 107 IQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 492
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=31.70 E-value=4.5e+02 Score=24.86 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Q 021757 229 DSVDDKRARRMLSNRESARRSRRRK--QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN------------NRI 294 (308)
Q Consensus 229 d~~e~KR~RR~lsNReSArRSR~RK--k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~E------------Nr~ 294 (308)
+.+-.++..++..++..+......+ ...+..+..++..|+.++..+..++..+.+.+..-..- .+.
T Consensus 107 ~~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~ 186 (301)
T PF14362_consen 107 EKEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKE 186 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHH
Q ss_pred HHHHHHHHHHHh
Q 021757 295 LKADIETLRAKK 306 (308)
Q Consensus 295 Lra~l~~Lrakv 306 (308)
.+.++..+++++
T Consensus 187 ~~~~~~~~~~~l 198 (301)
T PF14362_consen 187 KRAQLDAAQAEL 198 (301)
T ss_pred HHHHHHHHHHHH
No 493
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=31.68 E-value=5.4e+02 Score=27.63 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK---------------GLTDVNQKYDESAVNNRILKADIE 300 (308)
Q Consensus 236 ~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~---------------el~~L~qk~~~l~~ENr~Lra~l~ 300 (308)
..++...++.+++...=-..++.+|+.++...+.+....+. ++..+++++..+..+=...++++.
T Consensus 182 ~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~ 261 (754)
T TIGR01005 182 AGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTAD 261 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhC
Q 021757 301 TLRAKKF 307 (308)
Q Consensus 301 ~Lrakvk 307 (308)
.|+..++
T Consensus 262 ~l~~~l~ 268 (754)
T TIGR01005 262 SVKKALQ 268 (754)
T ss_pred HHHHHHh
No 494
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=31.67 E-value=2.5e+02 Score=30.29 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHH
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE----------------------------SAVNNRILKADIETLRAK 305 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~----------------------------l~~ENr~Lra~l~~Lrak 305 (308)
.+.+..|..++..|+.++..|..++..|..++.. ....-..|+++.+.|+++
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 021757 306 K 306 (308)
Q Consensus 306 v 306 (308)
|
T Consensus 582 l 582 (722)
T PF05557_consen 582 L 582 (722)
T ss_dssp H
T ss_pred H
No 495
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=31.53 E-value=1.3e+02 Score=25.59 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 021757 249 SRRRKQAH--LNELETQAGQLRAEHSSLLKGLTDV--NQKYDESAVN 291 (308)
Q Consensus 249 SR~RKk~~--l~eLE~qV~~Le~EN~~L~~el~~L--~qk~~~l~~E 291 (308)
++.+|-++ ++.++.|-..+..|++.|.++++.| ..+...|+++
T Consensus 34 ~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les~ 80 (109)
T PF11690_consen 34 SKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALESH 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
No 496
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=31.43 E-value=1.3e+02 Score=24.96 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (308)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~ 294 (308)
+..++.++..|+.++..|..++..|++...-....|..
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~~~ 110 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWI 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
No 497
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=31.36 E-value=5.1e+02 Score=26.09 Aligned_cols=74 Identities=9% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHH
Q 021757 233 DKRARRMLSNRESARR-SRRRKQAHLNELETQAGQLRAEHSSL------------LKGLTDVNQKYD-ESAVNNRILKAD 298 (308)
Q Consensus 233 ~KR~RR~lsNReSArR-SR~RKk~~l~eLE~qV~~Le~EN~~L------------~~el~~L~qk~~-~l~~ENr~Lra~ 298 (308)
..+.-++.-.+..+++ .+..-...+..|+.++..++.+...| ..++..+..++. .+..+-..++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 299 (457)
T TIGR01000 220 QLKSASDKDQKNQVKSTILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQK 299 (457)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHh
Q 021757 299 IETLRAKK 306 (308)
Q Consensus 299 l~~Lrakv 306 (308)
+..+++.+
T Consensus 300 l~~~~~~l 307 (457)
T TIGR01000 300 LLELESKI 307 (457)
T ss_pred HHHHHHHH
No 498
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.17 E-value=2.7e+02 Score=27.56 Aligned_cols=53 Identities=26% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHh
Q 021757 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQK--------------YDESAVNNRILKADIETLRAKK 306 (308)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~el~~L~qk--------------~~~l~~ENr~Lra~l~~Lrakv 306 (308)
+..|.|-+.++..=+.|...|+.+|..+++. +.++..|=+.||+-|++++.-|
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 499
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=31.02 E-value=2.7e+02 Score=27.15 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (308)
Q Consensus 233 ~KR~RR~lsNReSArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l 299 (308)
.++.-.++.|..+.-+--..|-++-.++......+..+.+.|+.++..|+.+...+..++..|+.++
T Consensus 173 l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~ 239 (264)
T PF07246_consen 173 LSHEISNLTNELSNLRNDIDKFQEREDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDI 239 (264)
T ss_pred HHHHHHHhhhhHHHhhchhhhhhhhhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
No 500
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=30.97 E-value=1.4e+02 Score=27.25 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021757 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (308)
Q Consensus 267 Le~EN~~L~~el~~L~qk~~~l~~ENr~Lra~l~~L 302 (308)
|..++..|..++..|+.++..|..++..+..++.+|
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~L 144 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRAL 144 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!