BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021759
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTG 123
G L+ +GG D T + S Y +N+W +PM T RS G V G + AVGG
Sbjct: 108 NGLLYAVGGF--DGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYD 165
Query: 124 ANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGV 183
+ ++ VECY+ ++ WT A++ + V+ + +Y G P + V
Sbjct: 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSV-EV 224
Query: 184 YDINKDTWNLMSD-GMKEGWTGISIVLEGKLFVI-SEHGDCPM---KQYNPDDDTWRYV 237
YD + W ++D M G+ V G L+V+ + G C + + YNP D W V
Sbjct: 225 YDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 67 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 126
L+ +GG D +S +Y TTN W+ + M R VNG + VGG +
Sbjct: 207 LYAVGG--HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC 264
Query: 127 NETMTAVECYDPESDTWTTAA 147
N + +VE Y+P +D WT +
Sbjct: 265 N--LASVEYYNPTTDKWTVVS 283
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 67 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 126
+ V+GG ++S Y +W + + + R + G + AVGG ++
Sbjct: 18 MVVVGG---QAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSL 74
Query: 127 NETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 186
+ V+ YDP D WT+ A +R + +AV+ +Y G+ S Y+I
Sbjct: 75 R--VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEA-YNI 131
Query: 187 NKDTW 191
+ W
Sbjct: 132 KSNEW 136
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 15/206 (7%)
Query: 65 GKLFVLGGMRS--DTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGT 122
G L+ +GG + D T + Y TNQW +PM PR+ G ++G I AVGG+
Sbjct: 72 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGS 131
Query: 123 GANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGG 182
I+ +VE Y+PE D W A + AV+ +Y G+ +
Sbjct: 132 HGCIHH--NSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AE 188
Query: 183 VYDINKDTWNLMSDGMKEGWTGISI-VLEGKLFVISEHGD----CPMKQYNPDDDTWRYV 237
Y ++ W +++ M +G + VL ++ + +++Y+ + +TW +V
Sbjct: 189 CYYPERNEWRMIT-AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 247
Query: 238 GGDKFPCEVMHRPFAVNGVEGKIYVV 263
P + + +G+IYV+
Sbjct: 248 A----PMKHRRSALGITVHQGRIYVL 269
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 67 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 126
L+ +GG D + S Y N+W++ + M T RS ++ I A GG
Sbjct: 172 LYAVGGF--DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ- 228
Query: 127 NETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 186
+ + +VE YD E++TWT A ++ + V ++YV G+ F YD
Sbjct: 229 -DQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYD-GHTFLDSVECYDP 286
Query: 187 NKDTWNLMSDGMKEGWTGISIVL 209
+ DTW+ ++ M G +G+ + +
Sbjct: 287 DTDTWSEVTR-MTSGRSGVGVAV 308
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 13/184 (7%)
Query: 62 PRQGKL-FVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVG 120
P+ G+L + GG + + +++ Y + W + + PRS A V G + AVG
Sbjct: 22 PKVGRLIYTAGGYFRQSLSYLEA---YNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVG 78
Query: 121 G--TGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFS 178
G + N +A++CY+P ++ W+ A + + R V+ +Y G + +
Sbjct: 79 GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG-SHGCIHH 137
Query: 179 PRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQ-----YNPDDDT 233
Y+ +D W+L++ M G+ + + +L D + Y P+ +
Sbjct: 138 NSVERYEPERDEWHLVAP-MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE 196
Query: 234 WRYV 237
WR +
Sbjct: 197 WRMI 200
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 37/217 (17%)
Query: 101 LTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160
L PR + V I GG ++++ +E Y+P TW A L++ + V
Sbjct: 13 LVPRGSHMAPKVGRLIYTAGGY---FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCV 69
Query: 161 MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD--------GMKEGWTGISIVLEGK 212
+G +Y G SP G D +N M++ + G+ V++G
Sbjct: 70 VGGLLYAVGGRN----NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG-VIDGH 124
Query: 213 LFVISEHGDC----PMKQYNPDDDTWRYVG-----GDKFPCEVMHR-PFAVNGVEGKIYV 262
++ + C +++Y P+ D W V V++R +AV G +G
Sbjct: 125 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG---- 180
Query: 263 VSSGLNVAIGRVYEEQNGGISAEWKVMTAPRAFKDLA 299
++ LN A Y E+N EW+++TA + A
Sbjct: 181 -TNRLNSAEC-YYPERN-----EWRMITAMNTIRSGA 210
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 15/206 (7%)
Query: 65 GKLFVLGGMRS--DTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGT 122
G L+ +GG + D T + Y TNQW +PM PR+ G ++G I AVGG+
Sbjct: 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGS 130
Query: 123 GANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGG 182
I+ +VE Y+PE D W A + AV+ +Y G+ +
Sbjct: 131 HGCIHH--NSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AE 187
Query: 183 VYDINKDTWNLMSDGMKEGWTGISI-VLEGKLFVISEHGD----CPMKQYNPDDDTWRYV 237
Y ++ W +++ M +G + VL ++ + +++Y+ + +TW +V
Sbjct: 188 CYYPERNEWRMIT-AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246
Query: 238 GGDKFPCEVMHRPFAVNGVEGKIYVV 263
P + + +G+IYV+
Sbjct: 247 A----PMKHRRSALGITVHQGRIYVL 268
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 67 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 126
L+ +GG D + S Y N+W++ + M T RS ++ I A GG
Sbjct: 171 LYAVGGF--DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ- 227
Query: 127 NETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 186
+ + +VE YD E++TWT A ++ + V ++YV G+ F YD
Sbjct: 228 -DQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYD-GHTFLDSVECYDP 285
Query: 187 NKDTWNLMSDGMKEGWTGISIVL 209
+ DTW+ ++ M G +G+ + +
Sbjct: 286 DTDTWSEVTR-MTSGRSGVGVAV 307
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 13/184 (7%)
Query: 62 PRQGKL-FVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVG 120
P+ G+L + GG + + +++ Y + W + + PRS A V G + AVG
Sbjct: 21 PKVGRLIYTAGGYFRQSLSYLEA---YNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVG 77
Query: 121 G--TGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFS 178
G + N +A++CY+P ++ W+ A + + R V+ +Y G + +
Sbjct: 78 GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG-SHGCIHH 136
Query: 179 PRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQ-----YNPDDDT 233
Y+ +D W+L++ M G+ + + +L D + Y P+ +
Sbjct: 137 NSVERYEPERDEWHLVAP-MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE 195
Query: 234 WRYV 237
WR +
Sbjct: 196 WRMI 199
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 34/195 (17%)
Query: 123 GANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGG 182
G ++++ +E Y+P TW A L++ + V+G +Y G SP G
Sbjct: 31 GGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN----NSPDGN 86
Query: 183 VYDINKDTWNLMSD--------GMKEGWTGISIVLEGKLFVISEHGDC----PMKQYNPD 230
D +N M++ + G+ V++G ++ + C +++Y P+
Sbjct: 87 TDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG-VIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 231 DDTWRYVG-----GDKFPCEVMHR-PFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISA 284
D W V V++R +AV G +G + S+ Y E+N
Sbjct: 146 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC------YYPERN----- 194
Query: 285 EWKVMTAPRAFKDLA 299
EW+++TA + A
Sbjct: 195 EWRMITAMNTIRSGA 209
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 93/226 (41%), Gaps = 56/226 (24%)
Query: 65 GKLFVLGGMRS--DTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGT 122
G L+ +GG + D T + Y TNQW + M PR+ G ++G I AVGG+
Sbjct: 64 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGS 123
Query: 123 GANINETMTAVECYDPESDTWTTAAKL---RMG-----LARYDSAVMG---------SKM 165
I+ ++VE Y+PE D W A + R+G L R AV G ++
Sbjct: 124 HGCIHH--SSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC 181
Query: 166 YVTEGWTWPF---MFSPRGGV--------------------------YDINKDTWNLMSD 196
Y E W M + R G YD+ +TW ++
Sbjct: 182 YYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 241
Query: 197 GMKEGWTGISI-VLEGKLFVISEHGDC----PMKQYNPDDDTWRYV 237
M+ + + I V +GK++V+ + ++ Y+PD DTW V
Sbjct: 242 -MRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV 286
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 67 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 126
L+ +GG D + S Y N+W++ +PM T RS ++ I A GG
Sbjct: 164 LYAVGGF--DGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQ- 220
Query: 127 NETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 186
+ + +VE YD E++TWT A +R + V K+YV G+ F YD
Sbjct: 221 -DQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYD-GHTFLDSVECYDP 278
Query: 187 NKDTWNLMSDGMKEGWTGISIVL 209
+ DTW+ ++ M G +G+ + +
Sbjct: 279 DSDTWSEVTR-MTSGRSGVGVAV 300
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 54 QAFACTSLPRQGKL-FVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV 112
QA C + P+ G+L + GG + + +++ Y + W + + PRS A V
Sbjct: 7 QAVPCRA-PKVGRLIYTAGGYFRQSLSYLEA---YNPSNGSWLRLADLQVPRSGLAGCVV 62
Query: 113 NGKIMAVGG--TGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEG 170
G + AVGG + N +A++CY+P ++ W+ A + + R V+ +Y G
Sbjct: 63 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGG 122
Query: 171 WTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQ---- 226
+ + Y+ +D W+L++ M G+ + + +L D +
Sbjct: 123 -SHGCIHHSSVERYEPERDEWHLVAP-MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 180
Query: 227 -YNPDDDTWRYV 237
Y P+ + WR +
Sbjct: 181 CYYPERNEWRMI 192
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 93/226 (41%), Gaps = 56/226 (24%)
Query: 65 GKLFVLGGMRS--DTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGT 122
G L+ +GG + D T + Y TNQW + M PR+ G ++G I AVGG+
Sbjct: 65 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGS 124
Query: 123 GANINETMTAVECYDPESDTWTTAAKL---RMG-----LARYDSAVMG---------SKM 165
I+ ++VE Y+PE D W A + R+G L R AV G ++
Sbjct: 125 HGCIHH--SSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC 182
Query: 166 YVTEGWTWPF---MFSPRGGV--------------------------YDINKDTWNLMSD 196
Y E W M + R G YD+ +TW ++
Sbjct: 183 YYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 242
Query: 197 GMKEGWTGISI-VLEGKLFVISEHGDC----PMKQYNPDDDTWRYV 237
M+ + + I V +GK++V+ + ++ Y+PD DTW V
Sbjct: 243 -MRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV 287
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 67 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 126
L+ +GG D + S Y N+W++ +PM T RS ++ I A GG
Sbjct: 165 LYAVGGF--DGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQ- 221
Query: 127 NETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 186
+ + +VE YD E++TWT A +R + V K+YV G+ F YD
Sbjct: 222 -DQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYD-GHTFLDSVECYDP 279
Query: 187 NKDTWNLMSDGMKEGWTGISIVL 209
+ DTW+ ++ M G +G+ + +
Sbjct: 280 DSDTWSEVTR-MTSGRSGVGVAV 301
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 54 QAFACTSLPRQGKL-FVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV 112
QA C + P+ G+L + GG + + +++ Y + W + + PRS A V
Sbjct: 8 QAVPCRA-PKVGRLIYTAGGYFRQSLSYLEA---YNPSNGSWLRLADLQVPRSGLAGCVV 63
Query: 113 NGKIMAVGG--TGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEG 170
G + AVGG + N +A++CY+P ++ W+ A + + R V+ +Y G
Sbjct: 64 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGG 123
Query: 171 WTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQ---- 226
+ + Y+ +D W+L++ M G+ + + +L D +
Sbjct: 124 -SHGCIHHSSVERYEPERDEWHLVAP-MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 181
Query: 227 -YNPDDDTWRYV 237
Y P+ + WR +
Sbjct: 182 CYYPERNEWRMI 193
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 23/210 (10%)
Query: 65 GKLFVLGGMRS--DTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGT 122
G L+ +GG + D T + Y TNQW +P PR+ G ++G I AVGG+
Sbjct: 71 GLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGS 130
Query: 123 GANINETMTAVECYDPESDTWTTAA---KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSP 179
I+ +VE Y+PE D W A R+G+ AV+ +Y G+ +
Sbjct: 131 HGCIHH--NSVERYEPERDEWHLVAPXLTRRIGVG---VAVLNRLLYAVGGFDGTNRLNS 185
Query: 180 RGGVYDINKDTWNLMS--DGMKEGWTGISIVLEGKLFVISEHGD----CPMKQYNPDDDT 233
Y ++ W ++ + ++ G G+ VL ++ + +++Y+ + +T
Sbjct: 186 -AECYYPERNEWRXITAXNTIRSG-AGV-CVLHNCIYAAGGYDGQDQLNSVERYDVETET 242
Query: 234 WRYVGGDKFPCEVMHRPFAVNGVEGKIYVV 263
W +V P + + +G+IYV+
Sbjct: 243 WTFVA----PXKHRRSALGITVHQGRIYVL 268
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 67 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 126
++ GG D + + S Y T W +P RS G+I +GG +
Sbjct: 218 IYAAGGY--DGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHT 275
Query: 127 NETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160
+ +VECYDP++DTW+ + G + AV
Sbjct: 276 --FLDSVECYDPDTDTWSEVTRXTSGRSGVGVAV 307
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 62 PRQGKL-FVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVG 120
P+ G+L + GG + + +++ Y + W + + PRS A V G + AVG
Sbjct: 21 PKVGRLIYTAGGYFRQSLSYLEA---YNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVG 77
Query: 121 G--TGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFS 178
G + N +A++CY+P ++ W+ A + R V+ +Y G + +
Sbjct: 78 GRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGG-SHGCIHH 136
Query: 179 PRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQ-----YNPDDDT 233
Y+ +D W+L++ + G+ + + +L D + Y P+ +
Sbjct: 137 NSVERYEPERDEWHLVAPXLTR-RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE 195
Query: 234 WRYV 237
WR +
Sbjct: 196 WRXI 199
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 67 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 126
L+ +GG D + S Y N+W+ + T RS ++ I A GG
Sbjct: 171 LYAVGGF--DGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQ- 227
Query: 127 NETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 186
+ + +VE YD E++TWT A + + V ++YV G+ F YD
Sbjct: 228 -DQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYD-GHTFLDSVECYDP 285
Query: 187 NKDTWNLMSDGMKEGWTGISIVL 209
+ DTW+ ++ G +G+ + +
Sbjct: 286 DTDTWSEVTR-XTSGRSGVGVAV 307
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 34/195 (17%)
Query: 123 GANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGG 182
G ++++ +E Y+P + TW A L++ + V+G +Y G SP G
Sbjct: 31 GGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN----NSPDGN 86
Query: 183 VYDINKDTWNLMSD--------GMKEGWTGISIVLEGKLFVISEHGDC----PMKQYNPD 230
D +N ++ + G+ V++G ++ + C +++Y P+
Sbjct: 87 TDSSALDCYNPXTNQWSPCAPXSVPRNRIGVG-VIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 231 DDTWRYVGGD-----KFPCEVMHR-PFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISA 284
D W V V++R +AV G +G + S+ Y E+N
Sbjct: 146 RDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC------YYPERN----- 194
Query: 285 EWKVMTAPRAFKDLA 299
EW+ +TA + A
Sbjct: 195 EWRXITAXNTIRSGA 209
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 63 RQGKLFVLGGMRSDTET---PMQSTIM-YRATTNQWQLASPMLTPRSFFASGNVNGKIMA 118
+Q +++V+GG+ D E P+QS +++W P+ + R F G V+ KI
Sbjct: 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYV 114
Query: 119 VGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFS 178
V G ++ +V CYDP + W+ L + + ++ +Y G T +
Sbjct: 115 VAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT 174
Query: 179 PRGGVYDINKDTW 191
R +Y+ K W
Sbjct: 175 NRVFIYNPKKGDW 187
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 6/152 (3%)
Query: 54 QAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVN 113
+ + + G ++ LGG ++D + +Y W+ +PM TPRS F
Sbjct: 148 KVYGHNVISHNGMIYCLGG-KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHK 206
Query: 114 GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTW 173
GKI+ GG + +VE +D +++ W + + + +Y G+
Sbjct: 207 GKIVIAGGVTE--DGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAM 264
Query: 174 PFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI 205
+ S ++N D W D K+ W G+
Sbjct: 265 IQLESKEFAPTEVN-DIWKYEDD--KKEWAGM 293
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 66 KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGAN 125
++V+GG D + S Y T+ W + M TPR + + + G++ A+ G
Sbjct: 208 HIYVVGGF--DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDG- 264
Query: 126 INETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160
N ++++ECYDP D+W MG R D+ V
Sbjct: 265 -NSLLSSIECYDPIIDSWEVVTS--MGTQRCDAGV 296
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 21/207 (10%)
Query: 67 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 126
L V+GG S ++P+ Y T +W + R + AS +++ +I +GG
Sbjct: 17 LLVVGGFGSQ-QSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG-- 73
Query: 127 NETMTAVECYDPESD---TWTTAA--KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRG 181
+++VEC D +D W + A +R GLA + +G +YV+ G+ +
Sbjct: 74 RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA--GATTLGDMIYVSGGFDGSRRHTSM- 130
Query: 182 GVYDINKDTWNLMSDGMKEGWTGISIVL-EGKLFVISEHGDC----PMKQYNPDDDTWRY 236
YD N D W+++ D M+ G +V+ G ++ + + +++Y+P W
Sbjct: 131 ERYDPNIDQWSMLGD-MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189
Query: 237 VGGDKFPCEVMHRPFAVNGVEGKIYVV 263
V P V + IYVV
Sbjct: 190 V----TPMATKRSGAGVALLNDHIYVV 212
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 6/148 (4%)
Query: 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTG 123
G ++ LGG D + S Y T W +PM T RS +N I VGG
Sbjct: 159 SGVIYCLGGY--DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFD 216
Query: 124 ANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGV 183
+ +++VE Y+ +D+WTT + + V+ ++Y G+ + S
Sbjct: 217 GTAH--LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSI-EC 273
Query: 184 YDINKDTWNLMSD-GMKEGWTGISIVLE 210
YD D+W +++ G + G+ ++ E
Sbjct: 274 YDPIIDSWEVVTSMGTQRCDAGVCVLRE 301
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 100 MLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA 159
M PR+ G N ++ VGG G+ + VE YDP++ W+ + S
Sbjct: 2 MQGPRTRARLG-ANEVLLVVGGFGSQ-QSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV 59
Query: 160 VMGSKMYVTEGWTWPFMFSPRGGV-YDINKDT--WNLMSDGMKEGWTGISIVLEGKLFVI 216
+ ++YV G+ S + Y ++D +++ ++ G G + + G + +
Sbjct: 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYV 117
Query: 217 SEHGD-----CPMKQYNPDDDTWRYVG 238
S D M++Y+P+ D W +G
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLG 144
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 26/172 (15%)
Query: 43 PYPYQALAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLT 102
P P +LA C +GK++ GG + + Y T W MLT
Sbjct: 89 PTPRDSLAACAA---------EGKIYTSGGSEVGN-SALYLFECYDTRTESWHTKPSMLT 138
Query: 103 PRSFFASGNVNGKIMAVGGT-GANIN-ETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160
R NG I GG+ G N++ + + E YDP ++TWT + +
Sbjct: 139 QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF 198
Query: 161 MGSKMYVTEGWTWPFMFSPRGGV-----YDINKDTWNLMSDGMKEGWTGISI 207
+ K++ G + GG+ YDI + W ++S W G+++
Sbjct: 199 VKDKIFAVGGQ------NGLGGLDNVEYYDIKLNEWKMVS---PMPWKGVTV 241
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 67 LFVLGGMRSDTETPMQSTIMYRATTNQW--QLASPMLTPRSFFASGNVNGKIMAVGGTGA 124
+++LGG + P++ Y + W +L P TPR A+ GKI GG+
Sbjct: 58 VYILGGSQL---FPIKRMDCYNVVKDSWYSKLGPP--TPRDSLAACAAEGKIYTSGGSEV 112
Query: 125 NINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEG 170
N + ECYD +++W T + + +YV G
Sbjct: 113 G-NSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGG 157
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 63 RQGKLFVLGGM---RSDTETPMQSTIM-YRATTNQWQLASPMLTPRSFFASGNVNGKIMA 118
++ ++FV GG+ + E PM + + + ++W P+ +PR F G I
Sbjct: 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYV 103
Query: 119 VGGTGANINE-TMTAVECYDPESDTW 143
VGG E + +V CYD S W
Sbjct: 104 VGGREIKDGERCLDSVMCYDRLSFKW 129
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 56 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGK 115
+ T L ++V+GG SD + + +Y +W+ +PM T RS F + +G+
Sbjct: 140 YGHTVLSHMDLVYVIGGKGSDRKC-LNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGR 198
Query: 116 IMAVGGT 122
I+ G
Sbjct: 199 IIVAAGV 205
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 26/163 (15%)
Query: 45 PYQALAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQSTIMYRATTNQWQLASPMLT 102
P L + P A A P G++ + R+D +P T+ T+ W ++ +++
Sbjct: 180 PTIDLPIVPAAAAIE--PTSGRVLMWSSYRNDAFGGSPGGITL-----TSSWDPSTGIVS 232
Query: 103 PRS-------FFASG---NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG 152
R+ F G + NG+I+ GG A YD SD+W +++
Sbjct: 233 DRTVTVTKHDMFXPGISMDGNGQIVVTGGNDAK------KTSLYDSSSDSWIPGPDMQVA 286
Query: 153 LARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWNLM 194
SA M T G +W +F G VY + TW +
Sbjct: 287 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 60 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMA 118
S+ G++ V GG + + T +Y ++++ W M R + +S + +G++
Sbjct: 249 SMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 302
Query: 119 VGGT-GANINETMTAVECYDPESDTWTTAAKLRM 151
+GG+ + E E Y P S TWT+ ++
Sbjct: 303 IGGSWSGGVFEKNG--EVYSPSSKTWTSLPNAKV 334
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 26/163 (15%)
Query: 45 PYQALAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQSTIMYRATTNQWQLASPMLT 102
P L + P A A P G++ + R+D +P T+ T+ W ++ +++
Sbjct: 163 PTIDLPIVPAAAAIE--PTSGRVLMWSSYRNDAFGGSPGGITL-----TSSWDPSTGIVS 215
Query: 103 PRS-------FFASG---NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG 152
R+ F G + NG+I+ GG A YD SD+W +++
Sbjct: 216 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KTSLYDSSSDSWIPGPDMQVA 269
Query: 153 LARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWNLM 194
SA M T G +W +F G VY + TW +
Sbjct: 270 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 312
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 60 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMA 118
S+ G++ V GG + + T +Y ++++ W M R + +S + +G++
Sbjct: 232 SMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 285
Query: 119 VGGT-GANINETMTAVECYDPESDTWTTAAKLRM 151
+GG+ + E E Y P S TWT+ ++
Sbjct: 286 IGGSWSGGVFEKNG--EVYSPSSKTWTSLPNAKV 317
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 26/163 (15%)
Query: 45 PYQALAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQSTIMYRATTNQWQLASPMLT 102
P L + P A A P G++ + R+D +P T+ T+ W ++ +++
Sbjct: 163 PTIDLPIVPAAAAIE--PTSGRVLMWSSYRNDAFGGSPGGITL-----TSSWDPSTGIVS 215
Query: 103 PRS-------FFASG---NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG 152
R+ F G + NG+I+ GG A YD SD+W +++
Sbjct: 216 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KTSLYDSSSDSWIPGPDMQVA 269
Query: 153 LARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWNLM 194
SA M T G +W +F G VY + TW +
Sbjct: 270 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 312
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 60 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMA 118
S+ G++ V GG + + T +Y ++++ W M R + +S + +G++
Sbjct: 232 SMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 285
Query: 119 VGGT-GANINETMTAVECYDPESDTWTTAAKLRM 151
+GG+ + E E Y P S TWT+ ++
Sbjct: 286 IGGSWSGGVFEKNG--EVYSPSSKTWTSLPNAKV 317
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 45 PYQALAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR 104
P L + P A A P G++ + R+D I T+ W ++ +++ R
Sbjct: 185 PTIDLPIVPAAAAIE--PTSGRVLMWSSYRNDAFEGSPGGITL---TSSWDPSTGIVSDR 239
Query: 105 S-------FFASG---NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLA 154
+ F G + NG+I+ GG A YD SD+W +++
Sbjct: 240 TVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KTSLYDSSSDSWIPGPDMQVARG 293
Query: 155 RYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWNLM 194
SA M T G ++ +F G VY + TW +
Sbjct: 294 YQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSL 334
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 60 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMA 118
S+ G++ V GG + + T +Y ++++ W M R + +S + +G++
Sbjct: 254 SMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 307
Query: 119 VGGT-GANINETMTAVECYDPESDTWTTAAKLRM 151
+GG+ + E E Y P S TWT+ ++
Sbjct: 308 IGGSFSGGVFEKNG--EVYSPSSKTWTSLPNAKV 339
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 26/163 (15%)
Query: 45 PYQALAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQSTIMYRATTNQWQLASPMLT 102
P L + P A A P G++ + R+D +P T+ T+ W ++ +++
Sbjct: 163 PTIDLPIVPAAAAIE--PTSGRVLMWSSYRNDAFGGSPGGITL-----TSSWDPSTGIVS 215
Query: 103 PRS-------FFASG---NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG 152
R+ F G + NG+I+ GG A YD SD+W +++
Sbjct: 216 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KTSLYDSSSDSWIPGPDMQVA 269
Query: 153 LARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWNLM 194
SA M T G ++ +F G VY + TW +
Sbjct: 270 RGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSL 312
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 60 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMA 118
S+ G++ V GG + + T +Y ++++ W M R + +S + +G++
Sbjct: 232 SMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 285
Query: 119 VGGT-GANINETMTAVECYDPESDTWTTAAKLRM 151
+GG+ + E E Y P S TWT+ ++
Sbjct: 286 IGGSFSGGVFEKNG--EVYSPSSKTWTSLPNAKV 317
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 26/163 (15%)
Query: 45 PYQALAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQSTIMYRATTNQWQLASPMLT 102
P L + P A A P G++ + R+D +P T+ T+ W ++ +++
Sbjct: 163 PTIDLPIVPAAAAIE--PTSGRVLMWSSYRNDAFGGSPGGITL-----TSSWDPSTGIVS 215
Query: 103 PRS-------FFASG---NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG 152
R+ F G + NG+I+ GG A YD SD+W +++
Sbjct: 216 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KTSLYDSSSDSWIPGPDMQVA 269
Query: 153 LARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLM 194
SA M +++ G +F G VY + TW +
Sbjct: 270 RGYQSSATMSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTWTSL 312
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 26/163 (15%)
Query: 45 PYQALAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQSTIMYRATTNQWQLASPMLT 102
P L + P A A P G++ + R+D +P T+ T+ W ++ +++
Sbjct: 163 PTIDLPIVPAAAAIE--PTSGRVLMWSSYRNDAFGGSPGGITL-----TSSWDPSTGIVS 215
Query: 103 PRS-------FFASG---NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG 152
R+ F G + NG+I+ GG A YD SD+W +++
Sbjct: 216 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KTSLYDSSSDSWIPGPDMQVA 269
Query: 153 LARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLM 194
SA M +++ G +F G VY + TW +
Sbjct: 270 RGYQSSATMSDGRVFTIGGSGSGGVFEKNGEVYSPSSKTWTSL 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,632,669
Number of Sequences: 62578
Number of extensions: 414939
Number of successful extensions: 887
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 60
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)