Query 021759
Match_columns 308
No_of_seqs 196 out of 2111
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 4.8E-43 1E-47 322.3 26.6 238 51-299 321-563 (571)
2 PHA02713 hypothetical protein; 100.0 3.4E-41 7.4E-46 311.2 26.0 223 55-291 296-542 (557)
3 KOG4441 Proteins containing BT 100.0 2.8E-39 6.1E-44 297.3 24.4 230 64-303 284-523 (571)
4 PLN02153 epithiospecifier prot 100.0 6.4E-38 1.4E-42 275.1 28.4 231 52-290 22-292 (341)
5 PHA03098 kelch-like protein; P 100.0 3.4E-38 7.4E-43 292.9 26.9 230 55-296 287-525 (534)
6 PHA02790 Kelch-like protein; P 100.0 1.8E-37 3.8E-42 282.7 25.9 205 64-289 271-477 (480)
7 PHA02713 hypothetical protein; 100.0 8.8E-37 1.9E-41 281.9 26.0 229 66-304 259-514 (557)
8 PLN02193 nitrile-specifier pro 100.0 1.7E-35 3.6E-40 269.1 30.2 230 52-290 165-418 (470)
9 TIGR03548 mutarot_permut cycli 100.0 4.1E-35 8.9E-40 255.6 25.3 242 56-304 7-305 (323)
10 TIGR03548 mutarot_permut cycli 100.0 1E-34 2.2E-39 253.0 24.1 206 55-272 65-318 (323)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 2.2E-34 4.8E-39 253.5 25.4 220 64-289 17-305 (346)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 2.1E-33 4.5E-38 247.3 24.2 209 53-268 54-332 (346)
13 PLN02153 epithiospecifier prot 100.0 1.2E-32 2.5E-37 241.8 24.6 209 57-269 78-326 (341)
14 PRK14131 N-acetylneuraminic ac 100.0 9E-33 1.9E-37 245.2 24.1 206 56-268 78-354 (376)
15 PRK14131 N-acetylneuraminic ac 100.0 1.1E-32 2.3E-37 244.6 24.0 235 56-298 32-339 (376)
16 KOG4693 Uncharacterized conser 100.0 3.8E-33 8.2E-38 222.0 18.3 231 59-291 18-285 (392)
17 KOG4693 Uncharacterized conser 100.0 5.2E-33 1.1E-37 221.2 16.8 215 51-267 75-312 (392)
18 PLN02193 nitrile-specifier pro 100.0 5E-31 1.1E-35 239.8 26.3 221 63-290 119-359 (470)
19 PHA03098 kelch-like protein; P 100.0 4.8E-30 1E-34 238.4 23.1 215 65-291 251-473 (534)
20 PHA02790 Kelch-like protein; P 100.0 4E-30 8.7E-35 234.5 21.5 167 52-238 308-478 (480)
21 KOG0379 Kelch repeat-containin 100.0 2.4E-27 5.1E-32 215.3 25.4 224 64-291 70-310 (482)
22 KOG1230 Protein containing rep 99.9 1.6E-25 3.5E-30 188.3 18.2 238 51-289 65-347 (521)
23 KOG0379 Kelch repeat-containin 99.9 6.2E-23 1.3E-27 186.5 20.4 201 98-301 55-274 (482)
24 KOG4152 Host cell transcriptio 99.9 1.4E-22 3.1E-27 174.8 14.6 231 51-289 29-309 (830)
25 KOG1230 Protein containing rep 99.9 1.3E-21 2.9E-26 164.9 14.3 185 52-237 121-347 (521)
26 KOG4152 Host cell transcriptio 99.9 1.2E-20 2.5E-25 163.1 17.0 205 56-268 85-343 (830)
27 COG3055 Uncharacterized protei 99.8 4.7E-18 1E-22 141.6 18.3 244 23-272 26-364 (381)
28 COG3055 Uncharacterized protei 99.7 3.4E-15 7.5E-20 124.6 14.1 186 95-289 28-262 (381)
29 PF13964 Kelch_6: Kelch motif 99.4 3.3E-13 7.1E-18 83.5 6.5 50 103-153 1-50 (50)
30 KOG2437 Muskelin [Signal trans 99.3 1.2E-12 2.6E-17 113.7 4.6 166 53-220 261-457 (723)
31 PF13964 Kelch_6: Kelch motif 99.2 1.9E-11 4E-16 75.6 5.9 49 53-104 2-50 (50)
32 KOG2437 Muskelin [Signal trans 99.2 6.9E-12 1.5E-16 109.1 3.4 176 91-268 238-458 (723)
33 PF01344 Kelch_1: Kelch motif; 99.2 1.6E-11 3.4E-16 74.9 3.3 47 103-150 1-47 (47)
34 PF13415 Kelch_3: Galactose ox 99.2 6.2E-11 1.4E-15 72.8 5.3 49 64-112 1-49 (49)
35 PF13415 Kelch_3: Galactose ox 99.1 2.2E-10 4.8E-15 70.3 5.8 49 113-161 1-49 (49)
36 PF07646 Kelch_2: Kelch motif; 99.1 3.5E-10 7.7E-15 69.4 6.3 48 103-150 1-49 (49)
37 PF01344 Kelch_1: Kelch motif; 99.1 3E-10 6.6E-15 69.2 5.0 45 152-196 1-45 (47)
38 PF13418 Kelch_4: Galactose ox 99.0 3E-10 6.4E-15 69.8 3.3 47 103-150 1-48 (49)
39 smart00612 Kelch Kelch domain. 99.0 9.8E-10 2.1E-14 66.8 5.2 47 115-163 1-47 (47)
40 smart00612 Kelch Kelch domain. 98.9 2.5E-09 5.4E-14 65.0 4.9 47 66-114 1-47 (47)
41 PF07646 Kelch_2: Kelch motif; 98.9 6.6E-09 1.4E-13 63.7 6.0 45 152-196 1-47 (49)
42 PF13418 Kelch_4: Galactose ox 98.8 4.9E-09 1.1E-13 64.3 4.5 45 152-196 1-46 (49)
43 PF07250 Glyoxal_oxid_N: Glyox 98.8 7.6E-07 1.6E-11 73.3 17.9 146 84-241 48-209 (243)
44 PLN02772 guanylate kinase 98.7 9.5E-08 2.1E-12 83.4 10.8 84 102-189 23-110 (398)
45 PF13854 Kelch_5: Kelch motif 98.6 9.3E-08 2E-12 56.3 5.5 42 100-141 1-42 (42)
46 PF07250 Glyoxal_oxid_N: Glyox 98.6 5.9E-06 1.3E-10 68.1 16.4 149 131-291 46-207 (243)
47 TIGR01640 F_box_assoc_1 F-box 98.5 4.4E-05 9.6E-10 63.3 20.6 182 82-266 14-216 (230)
48 PF13854 Kelch_5: Kelch motif 98.5 4.2E-07 9E-12 53.5 5.3 40 149-188 1-41 (42)
49 TIGR01640 F_box_assoc_1 F-box 98.4 5E-05 1.1E-09 63.0 18.0 155 131-288 14-183 (230)
50 PF07893 DUF1668: Protein of u 98.4 5E-05 1.1E-09 66.7 18.0 123 112-243 75-220 (342)
51 PLN02772 guanylate kinase 98.3 6.1E-06 1.3E-10 72.3 10.0 83 150-232 22-110 (398)
52 PF03089 RAG2: Recombination a 98.3 0.0001 2.3E-09 60.7 16.0 117 67-184 41-187 (337)
53 PF03089 RAG2: Recombination a 98.0 0.0012 2.5E-08 54.7 17.4 104 116-220 41-174 (337)
54 PF07893 DUF1668: Protein of u 98.0 0.0034 7.3E-08 55.2 20.8 120 63-196 75-216 (342)
55 PF12768 Rax2: Cortical protei 97.6 0.0054 1.2E-07 52.0 16.1 167 117-288 2-190 (281)
56 PRK11138 outer membrane biogen 97.6 0.057 1.2E-06 48.6 23.4 155 83-265 171-343 (394)
57 PF08450 SGL: SMP-30/Gluconola 97.6 0.033 7.2E-07 46.5 19.9 199 64-292 11-223 (246)
58 PRK11138 outer membrane biogen 97.5 0.052 1.1E-06 48.8 21.1 153 83-265 216-384 (394)
59 TIGR03300 assembly_YfgL outer 97.4 0.06 1.3E-06 48.1 21.1 153 83-265 201-369 (377)
60 COG4257 Vgb Streptogramin lyas 97.4 0.03 6.5E-07 46.5 16.2 190 84-299 85-322 (353)
61 PF13360 PQQ_2: PQQ-like domai 97.3 0.065 1.4E-06 44.2 23.3 164 83-268 4-184 (238)
62 TIGR03866 PQQ_ABC_repeats PQQ- 97.2 0.073 1.6E-06 45.2 18.5 141 66-234 2-149 (300)
63 PF13360 PQQ_2: PQQ-like domai 97.1 0.11 2.4E-06 42.8 19.8 165 64-264 36-219 (238)
64 PF12768 Rax2: Cortical protei 97.1 0.011 2.4E-07 50.2 11.6 108 177-292 14-131 (281)
65 PF05096 Glu_cyclase_2: Glutam 97.0 0.095 2.1E-06 43.8 15.7 181 63-265 54-250 (264)
66 PF08450 SGL: SMP-30/Gluconola 96.9 0.11 2.4E-06 43.3 16.3 165 55-238 42-221 (246)
67 KOG2055 WD40 repeat protein [G 96.8 0.18 4E-06 44.7 16.9 146 64-233 224-377 (514)
68 TIGR03300 assembly_YfgL outer 96.8 0.38 8.2E-06 42.9 22.4 142 64-236 65-216 (377)
69 PRK13684 Ycf48-like protein; P 96.5 0.55 1.2E-05 41.2 19.2 160 84-266 154-322 (334)
70 PF02191 OLF: Olfactomedin-lik 96.4 0.28 6E-06 41.1 15.0 183 64-266 30-239 (250)
71 PF03178 CPSF_A: CPSF A subuni 96.4 0.16 3.5E-06 44.2 14.2 121 131-265 62-190 (321)
72 PLN02919 haloacid dehalogenase 96.2 1.7 3.7E-05 44.4 22.2 142 113-268 694-880 (1057)
73 TIGR02800 propeller_TolB tol-p 96.2 0.91 2E-05 41.0 19.3 146 82-238 214-362 (417)
74 COG4257 Vgb Streptogramin lyas 96.1 0.49 1.1E-05 39.6 14.3 115 109-238 195-313 (353)
75 PRK04792 tolB translocation pr 96.1 1.2 2.5E-05 41.0 19.8 147 82-239 242-391 (448)
76 KOG2055 WD40 repeat protein [G 96.0 0.25 5.4E-06 43.9 13.1 144 64-231 268-418 (514)
77 cd00200 WD40 WD40 domain, foun 95.9 0.76 1.7E-05 37.9 19.3 143 64-233 20-168 (289)
78 PRK00178 tolB translocation pr 95.9 1.3 2.8E-05 40.4 19.9 146 82-239 223-372 (430)
79 KOG0310 Conserved WD40 repeat- 95.9 0.26 5.6E-06 44.0 12.8 145 63-231 78-226 (487)
80 PF10282 Lactonase: Lactonase, 95.9 0.6 1.3E-05 41.2 15.5 172 84-267 17-213 (345)
81 KOG0310 Conserved WD40 repeat- 95.8 0.76 1.7E-05 41.2 15.2 138 108-268 160-301 (487)
82 PF03178 CPSF_A: CPSF A subuni 95.7 0.44 9.6E-06 41.5 13.8 150 65-229 42-203 (321)
83 TIGR03866 PQQ_ABC_repeats PQQ- 95.6 1.2 2.6E-05 37.6 17.4 146 64-234 42-191 (300)
84 smart00284 OLF Olfactomedin-li 95.6 1.2 2.6E-05 37.3 16.9 185 64-266 34-244 (255)
85 cd00200 WD40 WD40 domain, foun 95.5 1.2 2.5E-05 36.7 18.8 144 64-233 104-252 (289)
86 cd00094 HX Hemopexin-like repe 95.4 1.1 2.5E-05 35.9 16.7 146 56-233 9-178 (194)
87 KOG0289 mRNA splicing factor [ 95.2 1.3 2.8E-05 39.4 14.4 120 106-243 350-475 (506)
88 PLN02919 haloacid dehalogenase 95.1 2.5 5.4E-05 43.2 18.4 155 58-233 688-891 (1057)
89 PF05096 Glu_cyclase_2: Glutam 95.0 1.9 4.1E-05 36.2 15.1 105 112-233 54-160 (264)
90 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.9 1.1 2.4E-05 42.0 14.4 115 107-236 63-197 (527)
91 PF12217 End_beta_propel: Cata 94.8 1.9 4.2E-05 35.8 15.1 156 57-219 79-258 (367)
92 PRK04922 tolB translocation pr 94.8 3.1 6.8E-05 37.9 19.6 146 82-238 228-376 (433)
93 KOG0649 WD40 repeat protein [G 94.8 2 4.3E-05 35.4 15.6 148 93-264 100-263 (325)
94 KOG1036 Mitotic spindle checkp 94.5 2.6 5.6E-05 35.8 16.3 131 83-233 36-166 (323)
95 PRK13684 Ycf48-like protein; P 94.5 3.1 6.7E-05 36.6 18.5 174 91-292 75-254 (334)
96 PF10282 Lactonase: Lactonase, 94.3 3.5 7.5E-05 36.4 19.0 161 57-239 148-333 (345)
97 KOG0316 Conserved WD40 repeat- 94.3 2 4.4E-05 35.2 12.4 133 83-233 82-216 (307)
98 PRK03629 tolB translocation pr 94.3 4.1 8.9E-05 37.2 19.7 167 82-265 223-392 (429)
99 PRK05137 tolB translocation pr 94.2 4.4 9.6E-05 37.0 21.3 146 82-238 226-374 (435)
100 PRK04043 tolB translocation pr 94.0 4.7 0.0001 36.7 17.3 144 82-239 213-366 (419)
101 PLN00181 protein SPA1-RELATED; 94.0 7.2 0.00016 38.7 19.3 101 113-231 587-691 (793)
102 cd00216 PQQ_DH Dehydrogenases 93.9 5.4 0.00012 37.1 17.6 113 64-193 61-191 (488)
103 cd00216 PQQ_DH Dehydrogenases 93.8 5.7 0.00012 36.9 18.4 164 81-264 255-455 (488)
104 COG1520 FOG: WD40-like repeat 93.6 5 0.00011 35.7 19.2 150 63-236 67-225 (370)
105 KOG0316 Conserved WD40 repeat- 93.5 3.4 7.4E-05 33.9 12.3 147 65-233 113-260 (307)
106 PF02191 OLF: Olfactomedin-lik 93.4 4.1 8.9E-05 34.1 15.1 159 55-230 69-247 (250)
107 PTZ00421 coronin; Provisional 93.3 7 0.00015 36.4 21.4 148 64-233 87-248 (493)
108 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.2 4.2 9E-05 38.2 14.7 113 64-193 69-197 (527)
109 PRK11028 6-phosphogluconolacto 93.1 5.5 0.00012 34.7 18.6 145 66-231 3-157 (330)
110 PF14870 PSII_BNR: Photosynthe 93.0 5.5 0.00012 34.4 19.3 176 64-267 27-207 (302)
111 TIGR03074 PQQ_membr_DH membran 92.7 11 0.00024 37.1 17.2 114 63-193 193-352 (764)
112 PTZ00421 coronin; Provisional 92.6 8.8 0.00019 35.8 18.4 114 113-237 179-297 (493)
113 TIGR02658 TTQ_MADH_Hv methylam 92.5 7.2 0.00016 34.5 15.7 118 114-236 13-142 (352)
114 PRK00178 tolB translocation pr 92.4 8.4 0.00018 35.0 21.1 103 130-238 222-327 (430)
115 KOG0266 WD40 repeat-containing 92.4 8.9 0.00019 35.3 15.5 108 113-233 257-367 (456)
116 PF08268 FBA_3: F-box associat 92.3 1.6 3.5E-05 32.3 8.8 81 207-288 2-86 (129)
117 PF12217 End_beta_propel: Cata 91.9 6.6 0.00014 32.8 14.3 156 105-265 76-257 (367)
118 PLN00033 photosystem II stabil 91.9 9.4 0.0002 34.5 19.4 156 91-266 165-347 (398)
119 PRK04792 tolB translocation pr 91.8 10 0.00022 34.8 22.4 103 130-238 241-346 (448)
120 PF14870 PSII_BNR: Photosynthe 91.7 8 0.00017 33.4 18.2 174 64-266 114-295 (302)
121 KOG0291 WD40-repeat-containing 91.7 13 0.00028 35.8 21.4 166 81-268 329-500 (893)
122 PRK05137 tolB translocation pr 91.6 11 0.00023 34.5 22.5 102 131-238 226-330 (435)
123 PF09910 DUF2139: Uncharacteri 91.6 4.6 0.0001 34.4 11.2 136 144-291 26-192 (339)
124 PLN00181 protein SPA1-RELATED; 91.6 16 0.00034 36.4 19.0 104 113-232 629-740 (793)
125 smart00284 OLF Olfactomedin-li 91.2 8 0.00017 32.4 15.4 161 53-230 72-252 (255)
126 PTZ00420 coronin; Provisional 91.0 14 0.00031 35.0 19.2 102 114-231 138-249 (568)
127 KOG0281 Beta-TrCP (transducin 90.9 6.6 0.00014 34.1 11.7 107 108-232 324-430 (499)
128 PRK04922 tolB translocation pr 90.8 13 0.00027 34.0 20.5 103 130-238 227-332 (433)
129 KOG0649 WD40 repeat protein [G 90.8 8.5 0.00018 31.9 12.5 117 142-269 100-229 (325)
130 PF06433 Me-amine-dh_H: Methyl 90.8 3.7 7.9E-05 35.9 10.2 72 162-235 249-325 (342)
131 PLN00033 photosystem II stabil 90.6 13 0.00028 33.6 19.0 133 113-265 249-389 (398)
132 KOG3545 Olfactomedin and relat 90.4 9.1 0.0002 31.7 13.0 154 133-308 12-184 (249)
133 cd00094 HX Hemopexin-like repe 90.4 8 0.00017 30.9 13.5 99 64-190 62-178 (194)
134 KOG0281 Beta-TrCP (transducin 89.8 5.1 0.00011 34.8 10.1 131 112-268 245-380 (499)
135 PF08268 FBA_3: F-box associat 89.7 6.6 0.00014 29.0 11.3 82 111-195 3-88 (129)
136 KOG0289 mRNA splicing factor [ 89.5 15 0.00033 32.9 15.6 118 56-196 350-471 (506)
137 TIGR02800 propeller_TolB tol-p 89.1 17 0.00036 32.8 22.1 146 131-290 214-362 (417)
138 KOG0291 WD40-repeat-containing 89.0 23 0.00049 34.2 20.9 144 105-270 308-459 (893)
139 PRK02889 tolB translocation pr 88.8 18 0.0004 32.9 19.3 145 82-238 220-368 (427)
140 PRK01742 tolB translocation pr 88.6 19 0.00041 32.8 17.9 160 82-265 228-390 (429)
141 KOG2321 WD40 repeat protein [G 88.3 7.3 0.00016 36.2 10.5 107 64-190 145-261 (703)
142 KOG0278 Serine/threonine kinas 88.1 14 0.00031 30.7 12.7 123 130-268 164-289 (334)
143 KOG0266 WD40 repeat-containing 88.0 22 0.00047 32.8 15.2 147 64-232 257-411 (456)
144 KOG0296 Angio-associated migra 87.0 20 0.00044 31.4 16.4 150 55-233 67-223 (399)
145 KOG4378 Nuclear protein COP1 [ 86.8 20 0.00043 32.8 12.2 90 132-231 188-281 (673)
146 KOG0318 WD40 repeat stress pro 86.5 27 0.00058 32.2 14.3 131 113-268 454-594 (603)
147 PLN03215 ascorbic acid mannose 86.2 11 0.00023 33.6 10.3 104 180-291 183-303 (373)
148 KOG0286 G-protein beta subunit 86.1 20 0.00044 30.5 18.3 177 64-265 108-292 (343)
149 PF06433 Me-amine-dh_H: Methyl 86.1 13 0.00028 32.5 10.6 206 64-285 47-280 (342)
150 KOG1332 Vesicle coat complex C 85.9 19 0.00041 29.9 12.0 103 115-239 176-296 (299)
151 PRK11028 6-phosphogluconolacto 85.9 23 0.00049 30.8 21.1 153 64-237 46-214 (330)
152 PF02239 Cytochrom_D1: Cytochr 85.9 25 0.00055 31.4 13.1 134 81-232 15-160 (369)
153 KOG3881 Uncharacterized conser 85.1 21 0.00045 31.6 11.2 146 64-233 160-323 (412)
154 PTZ00420 coronin; Provisional 84.2 39 0.00085 32.1 19.6 152 66-239 139-302 (568)
155 KOG0315 G-protein beta subunit 84.1 23 0.00051 29.5 15.1 109 113-237 51-161 (311)
156 COG4447 Uncharacterized protei 83.2 28 0.0006 29.6 11.6 197 62-295 52-256 (339)
157 KOG0315 G-protein beta subunit 83.1 26 0.00056 29.2 17.2 146 64-232 51-199 (311)
158 KOG0647 mRNA export protein (c 82.8 30 0.00064 29.7 13.2 123 82-220 94-219 (347)
159 PF09910 DUF2139: Uncharacteri 82.6 30 0.00065 29.7 18.9 138 81-231 77-231 (339)
160 KOG0305 Anaphase promoting com 82.5 41 0.00089 31.1 15.7 144 104-269 217-367 (484)
161 KOG1898 Splicing factor 3b, su 82.4 60 0.0013 32.9 14.8 117 131-259 912-1031(1205)
162 COG2706 3-carboxymuconate cycl 82.4 33 0.00072 30.0 22.6 162 64-239 51-232 (346)
163 KOG1036 Mitotic spindle checkp 82.2 31 0.00068 29.5 13.6 131 83-230 76-209 (323)
164 PRK03629 tolB translocation pr 81.6 42 0.00091 30.6 22.8 102 131-238 223-327 (429)
165 PLN03215 ascorbic acid mannose 80.0 44 0.00095 29.8 14.1 133 91-237 189-353 (373)
166 KOG2048 WD40 repeat protein [G 79.4 59 0.0013 31.0 14.4 162 53-238 382-559 (691)
167 KOG2321 WD40 repeat protein [G 78.8 30 0.00065 32.4 10.3 104 114-233 146-261 (703)
168 KOG3545 Olfactomedin and relat 78.3 38 0.00083 28.2 12.7 172 84-287 12-207 (249)
169 PF14781 BBS2_N: Ciliary BBSom 78.1 21 0.00045 26.7 7.7 62 163-237 64-134 (136)
170 KOG0265 U5 snRNP-specific prot 77.1 46 0.001 28.5 10.5 98 113-232 58-165 (338)
171 PF02239 Cytochrom_D1: Cytochr 76.9 55 0.0012 29.3 15.5 203 64-289 48-262 (369)
172 PRK04043 tolB translocation pr 76.4 61 0.0013 29.5 18.0 147 81-237 256-407 (419)
173 KOG0263 Transcription initiati 76.4 36 0.00077 32.8 10.4 62 162-231 588-650 (707)
174 KOG0279 G protein beta subunit 76.3 47 0.001 28.2 13.6 147 62-233 72-225 (315)
175 KOG0293 WD40 repeat-containing 76.0 59 0.0013 29.2 12.0 104 113-237 323-430 (519)
176 KOG1332 Vesicle coat complex C 76.0 38 0.00083 28.2 9.2 102 66-196 176-296 (299)
177 COG0823 TolB Periplasmic compo 75.8 64 0.0014 29.5 13.4 105 129-239 260-368 (425)
178 COG3823 Glutamine cyclotransfe 73.0 50 0.0011 26.9 15.7 180 64-265 55-248 (262)
179 KOG0296 Angio-associated migra 71.9 70 0.0015 28.2 14.7 114 107-239 68-188 (399)
180 PF02897 Peptidase_S9_N: Proly 71.8 77 0.0017 28.6 18.4 192 81-289 201-411 (414)
181 PF07433 DUF1513: Protein of u 71.7 67 0.0014 27.8 20.5 110 52-171 4-120 (305)
182 PF02897 Peptidase_S9_N: Proly 70.5 82 0.0018 28.4 19.4 191 63-265 133-344 (414)
183 COG1520 FOG: WD40-like repeat 70.2 79 0.0017 28.1 20.4 135 110-265 65-205 (370)
184 PRK02889 tolB translocation pr 69.9 88 0.0019 28.5 21.3 147 81-238 175-324 (427)
185 COG3386 Gluconolactonase [Carb 69.3 76 0.0017 27.6 13.1 137 81-230 46-193 (307)
186 PF13088 BNR_2: BNR repeat-lik 69.2 67 0.0015 26.9 14.4 195 63-262 57-275 (275)
187 PF07433 DUF1513: Protein of u 68.4 79 0.0017 27.4 10.4 107 151-266 3-119 (305)
188 PF07734 FBA_1: F-box associat 67.3 56 0.0012 25.2 8.8 82 207-289 2-90 (164)
189 KOG0639 Transducin-like enhanc 66.8 52 0.0011 30.4 8.8 111 56-189 468-583 (705)
190 KOG0278 Serine/threonine kinas 66.7 77 0.0017 26.6 11.2 85 133-228 207-295 (334)
191 KOG2111 Uncharacterized conser 66.5 87 0.0019 27.1 14.3 148 64-234 58-216 (346)
192 KOG0265 U5 snRNP-specific prot 65.7 88 0.0019 26.9 11.6 61 64-144 58-125 (338)
193 KOG0646 WD40 repeat protein [G 65.6 87 0.0019 28.5 9.9 140 105-268 83-239 (476)
194 TIGR03074 PQQ_membr_DH membran 65.4 1.5E+02 0.0033 29.5 16.3 114 107-236 188-352 (764)
195 PF11768 DUF3312: Protein of u 65.2 89 0.0019 29.3 10.2 109 114-231 219-330 (545)
196 PF14583 Pectate_lyase22: Olig 64.6 1.1E+02 0.0023 27.5 10.7 174 81-265 167-369 (386)
197 KOG0299 U3 snoRNP-associated p 64.3 1.1E+02 0.0025 27.8 11.2 132 111-266 211-346 (479)
198 COG3386 Gluconolactonase [Carb 63.0 1E+02 0.0022 26.8 17.4 173 84-270 87-280 (307)
199 KOG1523 Actin-related protein 62.3 1.1E+02 0.0023 26.7 10.1 96 81-191 31-135 (361)
200 KOG0640 mRNA cleavage stimulat 62.0 79 0.0017 27.4 8.6 137 81-233 237-386 (430)
201 KOG4649 PQQ (pyrrolo-quinoline 62.0 98 0.0021 26.2 13.7 91 130-233 32-126 (354)
202 PF13570 PQQ_3: PQQ-like domai 61.7 15 0.00033 20.6 3.3 23 207-231 18-40 (40)
203 KOG0274 Cdc4 and related F-box 61.3 1.5E+02 0.0033 28.1 16.6 135 109-266 336-472 (537)
204 PF12937 F-box-like: F-box-lik 60.9 6.8 0.00015 23.0 1.7 22 27-48 1-22 (47)
205 KOG0263 Transcription initiati 60.8 65 0.0014 31.1 8.7 57 208-269 586-642 (707)
206 KOG0282 mRNA splicing factor [ 60.3 46 0.00099 30.4 7.3 102 113-232 226-332 (503)
207 COG4447 Uncharacterized protei 59.8 1.1E+02 0.0024 26.1 9.7 153 94-266 34-190 (339)
208 KOG0313 Microtubule binding pr 59.7 1.3E+02 0.0028 26.8 10.1 63 113-188 311-377 (423)
209 KOG0279 G protein beta subunit 59.5 1.1E+02 0.0024 26.0 16.5 180 64-268 27-214 (315)
210 PF03088 Str_synth: Strictosid 57.7 23 0.0005 24.4 4.1 53 177-230 35-87 (89)
211 KOG0318 WD40 repeat stress pro 57.4 1.7E+02 0.0036 27.4 12.4 111 57-188 447-561 (603)
212 KOG0272 U4/U6 small nuclear ri 56.9 1.5E+02 0.0033 26.8 10.2 66 160-233 312-378 (459)
213 KOG0282 mRNA splicing factor [ 56.4 29 0.00062 31.6 5.4 115 161-289 225-348 (503)
214 KOG2048 WD40 repeat protein [G 55.6 2E+02 0.0043 27.7 14.1 112 113-238 393-513 (691)
215 KOG0294 WD40 repeat-containing 54.4 1.5E+02 0.0032 25.8 15.2 171 64-266 52-227 (362)
216 COG4946 Uncharacterized protei 53.7 1.9E+02 0.004 26.8 18.6 140 82-238 287-439 (668)
217 PF11768 DUF3312: Protein of u 53.2 2E+02 0.0043 27.2 10.3 109 65-190 219-332 (545)
218 PF08950 DUF1861: Protein of u 52.3 1.2E+02 0.0025 25.9 8.0 60 159-219 33-95 (298)
219 KOG1523 Actin-related protein 51.9 1.6E+02 0.0035 25.6 10.8 98 130-234 31-136 (361)
220 COG2706 3-carboxymuconate cycl 51.6 1.7E+02 0.0037 25.8 19.8 174 113-299 51-244 (346)
221 PF13088 BNR_2: BNR repeat-lik 50.7 1.5E+02 0.0032 24.8 9.4 99 63-167 168-275 (275)
222 KOG0308 Conserved WD40 repeat- 50.5 1.4E+02 0.0031 28.5 9.0 95 131-233 95-204 (735)
223 COG0823 TolB Periplasmic compo 50.4 2E+02 0.0044 26.3 13.6 107 81-196 261-368 (425)
224 COG4946 Uncharacterized protei 50.4 2.1E+02 0.0046 26.5 17.5 151 64-238 235-398 (668)
225 KOG0647 mRNA export protein (c 50.4 1.7E+02 0.0036 25.3 12.4 69 163-243 85-156 (347)
226 KOG0308 Conserved WD40 repeat- 50.3 2.4E+02 0.0052 27.1 13.5 67 62-142 127-204 (735)
227 PRK01742 tolB translocation pr 50.1 2E+02 0.0044 26.2 16.6 118 82-219 272-391 (429)
228 KOG1446 Histone H3 (Lys4) meth 49.5 1.7E+02 0.0037 25.2 16.0 155 131-296 36-200 (311)
229 KOG1897 Damage-specific DNA bi 48.2 3.2E+02 0.0069 27.9 11.9 151 65-229 787-943 (1096)
230 KOG0306 WD40-repeat-containing 46.9 1.4E+02 0.0031 29.2 8.6 95 108-219 378-474 (888)
231 KOG0286 G-protein beta subunit 45.7 2E+02 0.0043 24.8 17.1 132 84-234 79-221 (343)
232 KOG1896 mRNA cleavage and poly 45.5 3.8E+02 0.0083 28.1 11.8 121 104-229 966-1123(1366)
233 KOG4378 Nuclear protein COP1 [ 43.4 1.8E+02 0.0039 27.0 8.3 70 105-189 212-282 (673)
234 KOG0639 Transducin-like enhanc 42.8 2.9E+02 0.0062 25.8 11.5 104 113-231 476-582 (705)
235 PF15525 DUF4652: Domain of un 42.5 1.8E+02 0.0038 23.3 10.7 84 78-161 84-170 (200)
236 KOG0274 Cdc4 and related F-box 41.9 3.1E+02 0.0068 26.0 13.1 145 64-234 340-486 (537)
237 KOG0640 mRNA cleavage stimulat 41.8 2.4E+02 0.0051 24.6 9.1 95 131-233 238-338 (430)
238 KOG0772 Uncharacterized conser 40.5 2.2E+02 0.0047 26.7 8.4 99 152-265 316-428 (641)
239 KOG1445 Tumor-specific antigen 39.9 1.4E+02 0.0029 28.8 7.2 57 131-190 742-801 (1012)
240 KOG0306 WD40-repeat-containing 39.1 2.2E+02 0.0048 28.0 8.5 98 158-268 379-476 (888)
241 KOG0305 Anaphase promoting com 38.9 3.3E+02 0.0072 25.4 15.5 137 113-267 312-452 (484)
242 KOG1517 Guanine nucleotide bin 38.9 4.7E+02 0.01 27.2 11.3 93 162-264 1122-1227(1387)
243 KOG2106 Uncharacterized conser 38.8 3.3E+02 0.0072 25.4 19.2 207 56-302 204-419 (626)
244 COG3391 Uncharacterized conser 38.4 2.9E+02 0.0064 24.7 17.5 140 112-267 84-228 (381)
245 COG3391 Uncharacterized conser 37.9 3E+02 0.0065 24.6 18.2 153 58-233 79-242 (381)
246 KOG0271 Notchless-like WD40 re 37.4 3.1E+02 0.0067 24.7 15.3 129 83-231 138-277 (480)
247 KOG1897 Damage-specific DNA bi 37.4 4.7E+02 0.01 26.8 16.0 167 81-265 749-931 (1096)
248 KOG0272 U4/U6 small nuclear ri 37.1 3.2E+02 0.007 24.8 13.7 95 162-268 272-367 (459)
249 smart00564 PQQ beta-propeller 36.3 66 0.0014 16.6 4.1 24 208-233 4-27 (33)
250 PF08662 eIF2A: Eukaryotic tra 35.4 2.3E+02 0.0049 22.5 11.6 92 64-170 71-162 (194)
251 TIGR03032 conserved hypothetic 35.3 2.5E+02 0.0055 24.6 7.7 75 131-219 185-260 (335)
252 KOG0295 WD40 repeat-containing 34.5 3.4E+02 0.0073 24.2 17.4 92 164-269 305-398 (406)
253 KOG4499 Ca2+-binding protein R 34.4 2.7E+02 0.0059 23.3 7.4 30 205-235 217-246 (310)
254 KOG4547 WD40 repeat-containing 33.6 4.2E+02 0.009 25.0 10.1 90 131-234 80-176 (541)
255 KOG1963 WD40 repeat protein [G 33.1 2.5E+02 0.0054 27.8 8.0 96 130-231 431-539 (792)
256 KOG1538 Uncharacterized conser 33.0 1.3E+02 0.0028 29.1 5.9 50 162-220 24-74 (1081)
257 COG4880 Secreted protein conta 32.4 4E+02 0.0087 24.5 13.5 187 70-289 395-597 (603)
258 TIGR03032 conserved hypothetic 32.3 3.5E+02 0.0076 23.7 14.4 76 178-265 184-259 (335)
259 PF14583 Pectate_lyase22: Olig 30.9 4E+02 0.0087 24.0 9.5 87 82-172 216-303 (386)
260 PRK02888 nitrous-oxide reducta 30.2 5.2E+02 0.011 25.1 11.6 40 222-265 296-340 (635)
261 PRK10115 protease 2; Provision 30.0 5.5E+02 0.012 25.3 18.6 217 64-293 182-405 (686)
262 PF08662 eIF2A: Eukaryotic tra 29.1 2.9E+02 0.0064 21.9 13.1 64 113-188 71-134 (194)
263 PF00646 F-box: F-box domain; 28.4 13 0.00028 21.7 -0.8 23 27-49 3-25 (48)
264 smart00256 FBOX A Receptor for 28.1 41 0.00089 18.4 1.4 20 30-49 1-20 (41)
265 KOG1445 Tumor-specific antigen 26.9 1.9E+02 0.0042 27.8 6.0 53 221-276 741-794 (1012)
266 KOG1963 WD40 repeat protein [G 25.3 4E+02 0.0086 26.5 7.9 97 81-189 431-540 (792)
267 KOG1645 RING-finger-containing 25.1 2.5E+02 0.0054 25.4 6.1 103 179-287 216-322 (463)
268 KOG2111 Uncharacterized conser 24.4 4.8E+02 0.01 22.8 10.5 56 114-170 59-120 (346)
269 KOG0285 Pleiotropic regulator 23.4 3.1E+02 0.0068 24.4 6.3 66 162-234 162-227 (460)
270 PF15525 DUF4652: Domain of un 23.4 3.9E+02 0.0085 21.4 9.5 65 175-239 84-157 (200)
271 KOG1428 Inhibitor of type V ad 23.3 3E+02 0.0066 29.8 6.9 46 162-217 497-542 (3738)
272 PF13859 BNR_3: BNR repeat-lik 23.3 5E+02 0.011 22.6 11.7 175 64-238 8-213 (310)
273 KOG0771 Prolactin regulatory e 23.2 5.6E+02 0.012 23.1 10.1 85 179-266 207-301 (398)
274 PF05262 Borrelia_P83: Borreli 23.2 6.3E+02 0.014 23.7 8.8 88 76-168 369-456 (489)
275 PF14298 DUF4374: Domain of un 22.9 6E+02 0.013 23.4 13.5 61 129-191 365-428 (435)
276 PHA02579 7 baseplate wedge sub 21.6 8.2E+02 0.018 24.5 15.3 60 208-268 370-450 (1030)
277 KOG0292 Vesicle coat complex C 21.3 8.9E+02 0.019 24.8 14.3 137 66-239 219-357 (1202)
278 KOG1538 Uncharacterized conser 21.1 3.8E+02 0.0083 26.1 6.8 49 113-172 24-74 (1081)
279 KOG0285 Pleiotropic regulator 20.8 6.1E+02 0.013 22.7 17.9 159 83-266 216-379 (460)
280 KOG1446 Histone H3 (Lys4) meth 20.8 5.6E+02 0.012 22.2 14.8 98 82-192 36-135 (311)
281 PF00614 PLDc: Phospholipase D 20.5 90 0.0019 16.2 1.6 15 252-266 8-22 (28)
282 PF14781 BBS2_N: Ciliary BBSom 20.5 3.8E+02 0.0082 20.2 12.0 65 210-288 63-133 (136)
283 KOG0322 G-protein beta subunit 20.2 3.8E+02 0.0082 22.9 5.9 95 69-186 221-322 (323)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.8e-43 Score=322.26 Aligned_cols=238 Identities=28% Similarity=0.434 Sum_probs=207.5
Q ss_pred cCCCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCC
Q 021759 51 VCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETM 130 (308)
Q Consensus 51 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 130 (308)
.+|..++++++ +++||++||.+. +...++.+++||+.+++|..+++|+.+|..+++++++|.||++||.+ +...+
T Consensus 321 ~~r~~~~~~~~--~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~d--g~~~l 395 (571)
T KOG4441|consen 321 SPRCRVGVAVL--NGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFD--GEKSL 395 (571)
T ss_pred cccccccEEEE--CCEEEEEccccC-CCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccc--ccccc
Confidence 34555666666 999999999963 55778999999999999999999999999999999999999999998 88899
Q ss_pred CeEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEEC
Q 021759 131 TAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLE 210 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 210 (308)
+++|+|||.+++|+.+++|+.+|.++++++++++||++||.++.....+++++|||.+++|+.++++..++....+++++
T Consensus 396 ~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~ 475 (571)
T KOG4441|consen 396 NSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN 475 (571)
T ss_pred ccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEEC
Confidence 99999999999999999999999999999999999999999876658899999999999999999844444444558999
Q ss_pred CEEEEEeecC----CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceE-eEEEeeeecCCCceee
Q 021759 211 GKLFVISEHG----DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNV-AIGRVYEEQNGGISAE 285 (308)
Q Consensus 211 ~~ly~~gg~~----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~-~~~~~~~~~~~~~~~~ 285 (308)
++||++||++ ..++++|||++++|+.+..|+.+ |...+++..+++||++||.+.. ...+++. ||+++++
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~----rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~--ydp~~d~ 549 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP----RSAVGVVVLGGKLYAVGGFDGNNNLNTVEC--YDPETDT 549 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCCCCceeEcccCccc----cccccEEEECCEEEEEecccCccccceeEE--cCCCCCc
Confidence 9999999986 34589999999999999988888 9999999999999999995443 4455655 9999999
Q ss_pred eEEecCCCcccccc
Q 021759 286 WKVMTAPRAFKDLA 299 (308)
Q Consensus 286 W~~~~~p~~~~~~~ 299 (308)
|+.+..|....+..
T Consensus 550 W~~~~~~~~~~~~~ 563 (571)
T KOG4441|consen 550 WTEVTEPESGRGGA 563 (571)
T ss_pred eeeCCCccccccCc
Confidence 99887754444433
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=311.15 Aligned_cols=223 Identities=15% Similarity=0.302 Sum_probs=189.6
Q ss_pred CceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEE
Q 021759 55 AFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVE 134 (308)
Q Consensus 55 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 134 (308)
.++++++ +++||++||.... ...++++++|||.+++|.++++|+.+|..+++++++++||++||.+ +...+++++
T Consensus 296 ~~~~a~l--~~~IYviGG~~~~-~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~--~~~~~~sve 370 (557)
T PHA02713 296 NYASAIV--DNEIIIAGGYNFN-NPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQN--GTNVERTIE 370 (557)
T ss_pred ceEEEEE--CCEEEEEcCCCCC-CCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcC--CCCCCceEE
Confidence 4555555 9999999998422 2457889999999999999999999999999999999999999986 555678999
Q ss_pred EEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCC-----------------CcCCeEEEEeCCCCceeecccC
Q 021759 135 CYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPF-----------------MFSPRGGVYDINKDTWNLMSDG 197 (308)
Q Consensus 135 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~~yd~~~~~W~~~~~~ 197 (308)
+|||.+++|+.+++||.+|..+++++++++||++||.+... ...+++++|||++++|+.+++
T Consensus 371 ~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~- 449 (557)
T PHA02713 371 CYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN- 449 (557)
T ss_pred EEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC-
Confidence 99999999999999999999999999999999999986321 125789999999999999987
Q ss_pred ccCccc-eeEEEECCEEEEEeecC-----CcceEEEeCCC-CceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEe
Q 021759 198 MKEGWT-GISIVLEGKLFVISEHG-----DCPMKQYNPDD-DTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVA 270 (308)
Q Consensus 198 ~~~~~~-~~~~~~~~~ly~~gg~~-----~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~ 270 (308)
++.++. ..+++++++||++||.+ ...+++|||++ ++|+.++.|+.+ |..+++++++|+||++||....
T Consensus 450 m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~----r~~~~~~~~~~~iyv~Gg~~~~- 524 (557)
T PHA02713 450 FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR----LSALHTILHDNTIMMLHCYESY- 524 (557)
T ss_pred CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc----cccceeEEECCEEEEEeeecce-
Confidence 544444 44588999999999974 13578999999 899999998888 8999999999999999996542
Q ss_pred EEEeeeecCCCceeeeEEecC
Q 021759 271 IGRVYEEQNGGISAEWKVMTA 291 (308)
Q Consensus 271 ~~~~~~~~~~~~~~~W~~~~~ 291 (308)
..+ ++||+.+++|+.+..
T Consensus 525 -~~~--e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 525 -MLQ--DTFNVYTYEWNHICH 542 (557)
T ss_pred -eeh--hhcCcccccccchhh
Confidence 233 569999999997755
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.8e-39 Score=297.33 Aligned_cols=230 Identities=26% Similarity=0.475 Sum_probs=198.4
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCce
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW 143 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 143 (308)
.+.||++||..+. ....+.+..||+.+++|..+++||.+|..+++++++++||++||.+. +...++++++||+.+++|
T Consensus 284 ~~~l~~vGG~~~~-~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQ-GQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCC-CcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccC-CCcccceEEEecCCCCce
Confidence 6889999999642 36788999999999999999999999999999999999999999973 567789999999999999
Q ss_pred eeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCcccee-EEEECCEEEEEeecC--
Q 021759 144 TTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI-SIVLEGKLFVISEHG-- 220 (308)
Q Consensus 144 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~ly~~gg~~-- 220 (308)
+.+++|+.+|..+++++++|+||++||.++ ....+++++|||.+++|+.+++++. ++.++ +++++++||++||.+
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEecccc-ccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCC
Confidence 999999999999999999999999999984 5556799999999999999998444 55555 489999999999976
Q ss_pred ---CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCce-EeEEEeeeecCCCceeeeEEec---CCC
Q 021759 221 ---DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLN-VAIGRVYEEQNGGISAEWKVMT---APR 293 (308)
Q Consensus 221 ---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~-~~~~~~~~~~~~~~~~~W~~~~---~p~ 293 (308)
..++++|||.+++|+.+++|+.+ |.++++++++++||++||.+. ....+++ +||+++++|+.++ .++
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~----R~~~g~a~~~~~iYvvGG~~~~~~~~~VE--~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTR----RSGFGVAVLNGKIYVVGGFDGTSALSSVE--RYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccc----cccceEEEECCEEEEECCccCCCccceEE--EEcCCCCceeEcccCcccc
Confidence 36899999999999999999999 999999999999999999665 1233344 4999999999774 355
Q ss_pred ccccccccee
Q 021759 294 AFKDLAPSSC 303 (308)
Q Consensus 294 ~~~~~~~~~~ 303 (308)
...+++..+.
T Consensus 514 s~~g~~~~~~ 523 (571)
T KOG4441|consen 514 SAVGVVVLGG 523 (571)
T ss_pred ccccEEEECC
Confidence 5555554443
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6.4e-38 Score=275.10 Aligned_cols=231 Identities=19% Similarity=0.232 Sum_probs=181.1
Q ss_pred CCCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCC-CCC---cceEEEEeCCEEEEEcCCCCCCC
Q 021759 52 CPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPML-TPR---SFFASGNVNGKIMAVGGTGANIN 127 (308)
Q Consensus 52 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r---~~~~~~~~~~~iyv~GG~~~~~~ 127 (308)
+|..++++++ +++|||+||.........+++++||+.+++|.++++++ .+| ..|++++++++||++||.+ ..
T Consensus 22 pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~--~~ 97 (341)
T PLN02153 22 PRCSHGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRD--EK 97 (341)
T ss_pred CCCcceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCC--CC
Confidence 3445555555 89999999985433345689999999999999988764 344 3788999999999999986 55
Q ss_pred CCCCeEEEEeCCCCceeeCcCC-----cCcccceeEEEECCEEEEEecccCCC-----CcCCeEEEEeCCCCceeecccC
Q 021759 128 ETMTAVECYDPESDTWTTAAKL-----RMGLARYDSAVMGSKMYVTEGWTWPF-----MFSPRGGVYDINKDTWNLMSDG 197 (308)
Q Consensus 128 ~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~ 197 (308)
..++++++||+.+++|+.++++ |.+|..|++++++++|||+||.+... ...+++++||+.+++|+.++.+
T Consensus 98 ~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~ 177 (341)
T PLN02153 98 REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDP 177 (341)
T ss_pred CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCC
Confidence 5678999999999999999877 78999999999999999999986422 1346899999999999998763
Q ss_pred --ccCcccee-EEEECCEEEEEeecC------------CcceEEEeCCCCceEEecC---CCCCCccccCCeEEEEeCCE
Q 021759 198 --MKEGWTGI-SIVLEGKLFVISEHG------------DCPMKQYNPDDDTWRYVGG---DKFPCEVMHRPFAVNGVEGK 259 (308)
Q Consensus 198 --~~~~~~~~-~~~~~~~ly~~gg~~------------~~~~~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~~~~ 259 (308)
.+.++.++ +++++++||++||.. .+++++||+++++|+.+.. +|.+ |..+++++++++
T Consensus 178 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~----r~~~~~~~~~~~ 253 (341)
T PLN02153 178 GENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA----RSVFAHAVVGKY 253 (341)
T ss_pred CCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC----cceeeeEEECCE
Confidence 22444444 477899999998853 2579999999999999875 3444 888899999999
Q ss_pred EEEEcCCceEe------EEEe--eeecCCCceeeeEEec
Q 021759 260 IYVVSSGLNVA------IGRV--YEEQNGGISAEWKVMT 290 (308)
Q Consensus 260 l~v~gG~~~~~------~~~~--~~~~~~~~~~~W~~~~ 290 (308)
|||+||..... .... ..++||+++++|+.+.
T Consensus 254 iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 254 IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred EEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 99999963211 1111 2266999999999773
No 5
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.4e-38 Score=292.90 Aligned_cols=230 Identities=20% Similarity=0.358 Sum_probs=193.7
Q ss_pred CceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEE
Q 021759 55 AFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVE 134 (308)
Q Consensus 55 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 134 (308)
.++++++ +++||++||..... ...+++++||+.+++|.++++|+.+|..|++++++++||++||.+ .....++++
T Consensus 287 ~~~~~~~--~~~lyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~--~~~~~~~v~ 361 (534)
T PHA03098 287 CFGSVVL--NNVIYFIGGMNKNN-LSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIY--NSISLNTVE 361 (534)
T ss_pred cceEEEE--CCEEEEECCCcCCC-CeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCC--CCEecceEE
Confidence 3455555 99999999986433 456789999999999999999999999999999999999999987 566788999
Q ss_pred EEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccce-eEEEECCEE
Q 021759 135 CYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTG-ISIVLEGKL 213 (308)
Q Consensus 135 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~-~~~~~~~~l 213 (308)
+||+.+++|+.++++|.+|..+++++++++||++||........+++++||+.+++|+.+++ ++.++.+ .++..+++|
T Consensus 362 ~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~i 440 (534)
T PHA03098 362 SWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDGKI 440 (534)
T ss_pred EEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC-CCccccCceEEEECCEE
Confidence 99999999999999999999999999999999999976545557899999999999999987 4444444 447889999
Q ss_pred EEEeecC-------CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEe-EEEeeeecCCCceee
Q 021759 214 FVISEHG-------DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVA-IGRVYEEQNGGISAE 285 (308)
Q Consensus 214 y~~gg~~-------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~-~~~~~~~~~~~~~~~ 285 (308)
|++||.. ...+++||+++++|+.++.++.+ |..++++..+++||++||..... ...+ +.||+++++
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~v--~~yd~~~~~ 514 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP----RINASLCIFNNKIYVVGGDKYEYYINEI--EVYDDKTNT 514 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc----cccceEEEECCEEEEEcCCcCCccccee--EEEeCCCCE
Confidence 9999974 13499999999999999988877 78888888999999999975432 2233 559999999
Q ss_pred eEEecCCCccc
Q 021759 286 WKVMTAPRAFK 296 (308)
Q Consensus 286 W~~~~~p~~~~ 296 (308)
|+.++.++.+-
T Consensus 515 W~~~~~~p~~~ 525 (534)
T PHA03098 515 WTLFCKFPKVI 525 (534)
T ss_pred EEecCCCcccc
Confidence 99887655543
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=282.70 Aligned_cols=205 Identities=19% Similarity=0.318 Sum_probs=176.7
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCce
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW 143 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 143 (308)
++.||++||... ....+.+++|||.+++|..+++|+.+|..+++++++++||++||.+ . .+.+++|||.+++|
T Consensus 271 ~~~lyviGG~~~--~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~--~---~~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMN--NEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLP--N---PTSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCC--CCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcC--C---CCceEEEECCCCeE
Confidence 899999999843 3467889999999999999999999999999999999999999985 2 25689999999999
Q ss_pred eeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccce-eEEEECCEEEEEeecCCc
Q 021759 144 TTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTG-ISIVLEGKLFVISEHGDC 222 (308)
Q Consensus 144 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~-~~~~~~~~ly~~gg~~~~ 222 (308)
+.+++||.+|..+++++++++||++||.+.. .+.+++|||.+++|+.+++ ++.++.. .+++++++||++||
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~IYv~GG---- 415 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRLFLVGR---- 415 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEEEEECC----
Confidence 9999999999999999999999999997532 3679999999999999987 4444444 44789999999998
Q ss_pred ceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEe-EEEeeeecCCCceeeeEEe
Q 021759 223 PMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVA-IGRVYEEQNGGISAEWKVM 289 (308)
Q Consensus 223 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~-~~~~~~~~~~~~~~~W~~~ 289 (308)
.+++||+++++|+.+++|+.+ |..+++++++|+||++||..... ..++ ++||+++++|+..
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~----r~~~~~~v~~~~IYviGG~~~~~~~~~v--e~Yd~~~~~W~~~ 477 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYP----RDNPELIIVDNKLLLIGGFYRGSYIDTI--EVYNNRTYSWNIW 477 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCC----ccccEEEEECCEEEEECCcCCCcccceE--EEEECCCCeEEec
Confidence 368999999999999988888 88999999999999999965322 2233 5599999999854
No 7
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.8e-37 Score=281.88 Aligned_cols=229 Identities=15% Similarity=0.175 Sum_probs=183.4
Q ss_pred EEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceee
Q 021759 66 KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTT 145 (308)
Q Consensus 66 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~ 145 (308)
.|++.||.. . .....+++||+.+++|..+++||.+|..+++++++++||++||.+. .....+++++|||.+++|..
T Consensus 259 ~l~~~~g~~--~-~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~-~~~~~~~v~~Yd~~~n~W~~ 334 (557)
T PHA02713 259 CLVCHDTKY--N-VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNF-NNPSLNKVYKINIENKIHVE 334 (557)
T ss_pred EEEEecCcc--c-cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCC-CCCccceEEEEECCCCeEee
Confidence 355555531 1 2335689999999999999999999999999999999999999751 33457899999999999999
Q ss_pred CcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccc-eeEEEECCEEEEEeecC----
Q 021759 146 AAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWT-GISIVLEGKLFVISEHG---- 220 (308)
Q Consensus 146 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~~~ly~~gg~~---- 220 (308)
+++||.+|..+++++++++||++||.++ ....+++++|||.+++|+.+++ ++.++. ..+++++++||++||.+
T Consensus 335 ~~~m~~~R~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 335 LPPMIKNRCRFSLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDKWKMLPD-MPIALSSYGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred CCCCcchhhceeEEEECCEEEEECCcCC-CCCCceEEEEECCCCeEEECCC-CCcccccccEEEECCEEEEEeCCCcccc
Confidence 9999999999999999999999999864 3345789999999999999997 555544 44578999999999974
Q ss_pred ------------------CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeEEEeeeecCCCc
Q 021759 221 ------------------DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGI 282 (308)
Q Consensus 221 ------------------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~~~~~~ 282 (308)
...+++|||++++|+.+++|+.+ |..+++++++|+||++||...........++||++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeecCCCCcc----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence 24689999999999999988888 88899999999999999965322111112459999
Q ss_pred e-eeeEEe---cCCCcccccccceeE
Q 021759 283 S-AEWKVM---TAPRAFKDLAPSSCQ 304 (308)
Q Consensus 283 ~-~~W~~~---~~p~~~~~~~~~~~~ 304 (308)
+ ++|+.+ +.|+...+.+....+
T Consensus 489 ~~~~W~~~~~m~~~r~~~~~~~~~~~ 514 (557)
T PHA02713 489 TYNGWELITTTESRLSALHTILHDNT 514 (557)
T ss_pred CCCCeeEccccCcccccceeEEECCE
Confidence 9 899965 445665555544443
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.7e-35 Score=269.09 Aligned_cols=230 Identities=14% Similarity=0.210 Sum_probs=182.6
Q ss_pred CCCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCC---CC-CCcceEEEEeCCEEEEEcCCCCCCC
Q 021759 52 CPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPM---LT-PRSFFASGNVNGKIMAVGGTGANIN 127 (308)
Q Consensus 52 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~ 127 (308)
+|..+.++++ +++||++||.........+++++||+.+++|..++.+ |. .|..|++++++++|||+||.+ ..
T Consensus 165 pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~--~~ 240 (470)
T PLN02193 165 LRCSHGIAQV--GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRD--AS 240 (470)
T ss_pred CccccEEEEE--CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCC--CC
Confidence 3445555555 8999999998543333457899999999999987753 33 356889999999999999987 55
Q ss_pred CCCCeEEEEeCCCCceeeCcCC---cCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccC--ccCcc
Q 021759 128 ETMTAVECYDPESDTWTTAAKL---RMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDG--MKEGW 202 (308)
Q Consensus 128 ~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~--~~~~~ 202 (308)
..++++++||+.+++|++++++ |.+|..|++++.+++|||+||.+. ....+++++||+.+++|+.++.+ ++..+
T Consensus 241 ~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R 319 (470)
T PLN02193 241 RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA-TARLKTLDSYNIVDKKWFHCSTPGDSFSIR 319 (470)
T ss_pred CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC-CCCcceEEEEECCCCEEEeCCCCCCCCCCC
Confidence 6689999999999999999887 889999999999999999999864 33457899999999999988752 33334
Q ss_pred cee-EEEECCEEEEEeecC---CcceEEEeCCCCceEEecCC---CCCCccccCCeEEEEeCCEEEEEcCCceEe-----
Q 021759 203 TGI-SIVLEGKLFVISEHG---DCPMKQYNPDDDTWRYVGGD---KFPCEVMHRPFAVNGVEGKIYVVSSGLNVA----- 270 (308)
Q Consensus 203 ~~~-~~~~~~~ly~~gg~~---~~~~~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~----- 270 (308)
.++ +++++++||++||.. ..++++||+++++|+.+..+ |.+ |..++++.++++|||+||.....
T Consensus 320 ~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~----R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 395 (470)
T PLN02193 320 GGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSE----RSVFASAAVGKHIVIFGGEIAMDPLAHV 395 (470)
T ss_pred CCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCC----cceeEEEEECCEEEEECCccCCcccccc
Confidence 443 467899999999975 36899999999999999764 444 88889999999999999975311
Q ss_pred -EEEe--eeecCCCceeeeEEec
Q 021759 271 -IGRV--YEEQNGGISAEWKVMT 290 (308)
Q Consensus 271 -~~~~--~~~~~~~~~~~W~~~~ 290 (308)
.... ..+.||+++++|+.++
T Consensus 396 ~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 396 GPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred CccceeccEEEEEcCcCEEEEcc
Confidence 1111 1267999999999774
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=4.1e-35 Score=255.56 Aligned_cols=242 Identities=14% Similarity=0.176 Sum_probs=181.2
Q ss_pred ceEEEEcCCCEEEEEeccCCCC--------CCCCceeEEEe-CCCC-CccccCCCCCCCcceEEEEeCCEEEEEcCCCCC
Q 021759 56 FACTSLPRQGKLFVLGGMRSDT--------ETPMQSTIMYR-ATTN-QWQLASPMLTPRSFFASGNVNGKIMAVGGTGAN 125 (308)
Q Consensus 56 ~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~~~yd-~~~~-~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 125 (308)
..++++ ++.|||+||.+... ....+++++|+ +..+ +|..+++||.+|..+++++++++||++||.+
T Consensus 7 ~~~~~~--~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~-- 82 (323)
T TIGR03548 7 CYAGII--GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSN-- 82 (323)
T ss_pred EeeeEE--CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCC--
Confidence 344555 99999999986432 12346788886 3323 7999999999999888899999999999987
Q ss_pred CCCCCCeEEEEeCCCCce----eeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCc
Q 021759 126 INETMTAVECYDPESDTW----TTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEG 201 (308)
Q Consensus 126 ~~~~~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 201 (308)
....++++++||+.+++| +.++++|.+|..+++++++++||++||... ....+++++||+.+++|+++++.+..+
T Consensus 83 ~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~p~~~ 161 (323)
T TIGR03548 83 SSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNLETQEWFELPDFPGEP 161 (323)
T ss_pred CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC-CccCceEEEEcCCCCCeeECCCCCCCC
Confidence 556688999999999987 778999999999999999999999999753 344689999999999999998633334
Q ss_pred cceeE-EEECCEEEEEeecC---CcceEEEeCCCCceEEecCCCCC-CccccCCe-EEEEeCCEEEEEcCCceEe-----
Q 021759 202 WTGIS-IVLEGKLFVISEHG---DCPMKQYNPDDDTWRYVGGDKFP-CEVMHRPF-AVNGVEGKIYVVSSGLNVA----- 270 (308)
Q Consensus 202 ~~~~~-~~~~~~ly~~gg~~---~~~~~~yd~~~~~W~~~~~~~~~-~~~~~~~~-~~~~~~~~l~v~gG~~~~~----- 270 (308)
+..++ ++++++||++||.+ ..++++||+++++|+.++.++.. .+..+..+ +++..+++||++||.....
T Consensus 162 r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 162 RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence 44444 68999999999975 24678999999999999876421 01112233 3455689999999975321
Q ss_pred ----------------------------EEEeeeecCCCceeeeEEecC----CCcccccccceeE
Q 021759 271 ----------------------------IGRVYEEQNGGISAEWKVMTA----PRAFKDLAPSSCQ 304 (308)
Q Consensus 271 ----------------------------~~~~~~~~~~~~~~~W~~~~~----p~~~~~~~~~~~~ 304 (308)
...+ ++||+++++|+.++. +|..+.++..+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~ 305 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKI--LIYNVRTGKWKSIGNSPFFARCGAALLLTGNN 305 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceE--EEEECCCCeeeEcccccccccCchheEEECCE
Confidence 0122 569999999998752 3444444444433
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1e-34 Score=253.04 Aligned_cols=206 Identities=16% Similarity=0.205 Sum_probs=167.2
Q ss_pred CceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCc----cccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCC
Q 021759 55 AFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQW----QLASPMLTPRSFFASGNVNGKIMAVGGTGANINETM 130 (308)
Q Consensus 55 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 130 (308)
.++++++ +++||++||... ...++++++||+.+++| ..+++||.+|..|++++++++|||+||.. .....
T Consensus 65 ~~~~~~~--~~~lyviGG~~~--~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~--~~~~~ 138 (323)
T TIGR03548 65 YGASVSV--ENGIYYIGGSNS--SERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNR--NGKPS 138 (323)
T ss_pred ceEEEEE--CCEEEEEcCCCC--CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcC--CCccC
Confidence 3444444 999999999853 34578999999999987 78899999999999999999999999985 44557
Q ss_pred CeEEEEeCCCCceeeCcCCcC-cccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccC----ccCcccee
Q 021759 131 TAVECYDPESDTWTTAAKLRM-GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDG----MKEGWTGI 205 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~----~~~~~~~~ 205 (308)
+++++||+.+++|+.++++|. +|..+++++++++|||+||.+.. ...++++||+++++|+.++++ .+......
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~ 216 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGA 216 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccce
Confidence 899999999999999998874 78888888999999999998632 235689999999999998762 12222222
Q ss_pred -E-EEECCEEEEEeecCC------------------------------------cceEEEeCCCCceEEecCCC-CCCcc
Q 021759 206 -S-IVLEGKLFVISEHGD------------------------------------CPMKQYNPDDDTWRYVGGDK-FPCEV 246 (308)
Q Consensus 206 -~-~~~~~~ly~~gg~~~------------------------------------~~~~~yd~~~~~W~~~~~~~-~~~~~ 246 (308)
+ +..+++||++||.+. +++++||+++++|+.++.++ .+
T Consensus 217 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~--- 293 (323)
T TIGR03548 217 ASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFA--- 293 (323)
T ss_pred eEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccc---
Confidence 2 345799999999751 46999999999999998765 34
Q ss_pred ccCCeEEEEeCCEEEEEcCCceEeEE
Q 021759 247 MHRPFAVNGVEGKIYVVSSGLNVAIG 272 (308)
Q Consensus 247 ~~~~~~~~~~~~~l~v~gG~~~~~~~ 272 (308)
|..++++.++++||++||......+
T Consensus 294 -r~~~~~~~~~~~iyv~GG~~~pg~r 318 (323)
T TIGR03548 294 -RCGAALLLTGNNIFSINGELKPGVR 318 (323)
T ss_pred -cCchheEEECCEEEEEeccccCCcC
Confidence 8888899999999999997655443
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.2e-34 Score=253.49 Aligned_cols=220 Identities=18% Similarity=0.244 Sum_probs=165.5
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeC--CCCCccccCCCC-CCCcceEEEEeCCEEEEEcCCCCCC----CCCCCeEEEE
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRA--TTNQWQLASPML-TPRSFFASGNVNGKIMAVGGTGANI----NETMTAVECY 136 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~--~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~~y 136 (308)
+++|||+||.. .+++++||+ .+++|.++++|| .+|..+++++++++|||+||.+... ...++++++|
T Consensus 17 ~~~vyv~GG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Y 90 (346)
T TIGR03547 17 GDKVYVGLGSA------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRY 90 (346)
T ss_pred CCEEEEEcccc------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEE
Confidence 99999999973 256899996 678999999999 5899999999999999999985211 1246889999
Q ss_pred eCCCCceeeCc-CCcCcccceeEE-EECCEEEEEecccCCC---------------------------------CcCCeE
Q 021759 137 DPESDTWTTAA-KLRMGLARYDSA-VMGSKMYVTEGWTWPF---------------------------------MFSPRG 181 (308)
Q Consensus 137 d~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~---------------------------------~~~~~~ 181 (308)
|+.+++|+.++ ++|.+|.+++++ +++++||++||.+... ...+++
T Consensus 91 d~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (346)
T TIGR03547 91 DPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV 170 (346)
T ss_pred ECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence 99999999997 566777777766 6899999999975310 013689
Q ss_pred EEEeCCCCceeecccCccCcccee-EEEECCEEEEEeecC-----CcceEEEe--CCCCceEEecCCCCCCcc---ccCC
Q 021759 182 GVYDINKDTWNLMSDGMKEGWTGI-SIVLEGKLFVISEHG-----DCPMKQYN--PDDDTWRYVGGDKFPCEV---MHRP 250 (308)
Q Consensus 182 ~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~ly~~gg~~-----~~~~~~yd--~~~~~W~~~~~~~~~~~~---~~~~ 250 (308)
++|||.+++|+.+++++..++..+ ++.++++||++||.. ...++.|| +++++|+.++.|+.++.. .+..
T Consensus 171 ~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~ 250 (346)
T TIGR03547 171 LSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAG 250 (346)
T ss_pred EEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccE
Confidence 999999999999987433344444 478899999999974 12355555 577899999988776311 1234
Q ss_pred eEEEEeCCEEEEEcCCceEe---------------EEE-eeeecCCCceeeeEEe
Q 021759 251 FAVNGVEGKIYVVSSGLNVA---------------IGR-VYEEQNGGISAEWKVM 289 (308)
Q Consensus 251 ~~~~~~~~~l~v~gG~~~~~---------------~~~-~~~~~~~~~~~~W~~~ 289 (308)
+.+++++++||++||..... ... ...++||++.++|+.+
T Consensus 251 ~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 251 AFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred EeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence 55678999999999964211 000 1225699999999865
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.1e-33 Score=247.29 Aligned_cols=209 Identities=19% Similarity=0.238 Sum_probs=161.7
Q ss_pred CCCceEEEEcCCCEEEEEeccCCCC----CCCCceeEEEeCCCCCccccC-CCCCCCcceEEE-EeCCEEEEEcCCCCCC
Q 021759 53 PQAFACTSLPRQGKLFVLGGMRSDT----ETPMQSTIMYRATTNQWQLAS-PMLTPRSFFASG-NVNGKIMAVGGTGANI 126 (308)
Q Consensus 53 ~~~~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~ 126 (308)
|..++++++ +++|||+||..... ...++++++||+.+++|++++ .+|.+|..++++ +++++||++||.+...
T Consensus 54 R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~ 131 (346)
T TIGR03547 54 RNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNI 131 (346)
T ss_pred cccceEEEE--CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHH
Confidence 334555555 99999999985322 124788999999999999997 456777777776 6899999999985110
Q ss_pred --C------------------------------CCCCeEEEEeCCCCceeeCcCCcC-cccceeEEEECCEEEEEecccC
Q 021759 127 --N------------------------------ETMTAVECYDPESDTWTTAAKLRM-GLARYDSAVMGSKMYVTEGWTW 173 (308)
Q Consensus 127 --~------------------------------~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~ 173 (308)
. ..++++++|||.+++|+.+++||. +|..+++++++++|||+||...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~ 211 (346)
T TIGR03547 132 FDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIK 211 (346)
T ss_pred HHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeC
Confidence 0 024789999999999999999996 6888889999999999999864
Q ss_pred CCCcCCeEEEEe--CCCCceeecccCccCcc-------cee-EEEECCEEEEEeecCC---------------------c
Q 021759 174 PFMFSPRGGVYD--INKDTWNLMSDGMKEGW-------TGI-SIVLEGKLFVISEHGD---------------------C 222 (308)
Q Consensus 174 ~~~~~~~~~~yd--~~~~~W~~~~~~~~~~~-------~~~-~~~~~~~ly~~gg~~~---------------------~ 222 (308)
.......+++|| +.+++|+.+++ ++.++ .++ +++++++||++||... .
T Consensus 212 ~~~~~~~~~~y~~~~~~~~W~~~~~-m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (346)
T TIGR03547 212 PGLRTAEVKQYLFTGGKLEWNKLPP-LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAW 290 (346)
T ss_pred CCccchheEEEEecCCCceeeecCC-CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCcee
Confidence 333344566665 57779999987 33322 222 4678999999999641 2
Q ss_pred ceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCce
Q 021759 223 PMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLN 268 (308)
Q Consensus 223 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~ 268 (308)
.+++||+++++|+.+..|+.+ +..++++.++++|||+||...
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~----~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQG----LAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCC----ceeeEEEEcCCEEEEEeccCC
Confidence 578999999999999988877 777788889999999999754
No 13
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.2e-32 Score=241.80 Aligned_cols=209 Identities=13% Similarity=0.253 Sum_probs=159.9
Q ss_pred eEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCC-----CCCCcceEEEEeCCEEEEEcCCCCCC----C
Q 021759 57 ACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPM-----LTPRSFFASGNVNGKIMAVGGTGANI----N 127 (308)
Q Consensus 57 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~----~ 127 (308)
+++++..+++||++||... ...++++++||+.+++|+++++| |.+|..|++++.+++|||+||.+..+ .
T Consensus 78 ~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDE--KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred ceEEEEECCEEEEECCCCC--CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCC
Confidence 3333334999999999853 34578999999999999999877 78999999999999999999986211 1
Q ss_pred CCCCeEEEEeCCCCceeeCcCCc---CcccceeEEEECCEEEEEecccCC-------CCcCCeEEEEeCCCCceeeccc-
Q 021759 128 ETMTAVECYDPESDTWTTAAKLR---MGLARYDSAVMGSKMYVTEGWTWP-------FMFSPRGGVYDINKDTWNLMSD- 196 (308)
Q Consensus 128 ~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~~~~yd~~~~~W~~~~~- 196 (308)
..++++++||+.+++|+.++++. .+|.++++++++++||++||.... ....+++++||+.+++|++++.
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 24578999999999999998654 789999999999999999986421 1225789999999999999874
Q ss_pred -CccCcccee-EEEECCEEEEEeecC-------------CcceEEEeCCCCceEEecCC---CCCCccccCCeEE-EEe-
Q 021759 197 -GMKEGWTGI-SIVLEGKLFVISEHG-------------DCPMKQYNPDDDTWRYVGGD---KFPCEVMHRPFAV-NGV- 256 (308)
Q Consensus 197 -~~~~~~~~~-~~~~~~~ly~~gg~~-------------~~~~~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~-~~~- 256 (308)
.+|.++..+ +++++++||++||.. .+++++||+++++|+.+... ++|+. +..++. ++.
T Consensus 236 g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~--~~~~~~~~v~~ 313 (341)
T PLN02153 236 GAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRG--WTAYTTATVYG 313 (341)
T ss_pred CCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCc--cccccccccCC
Confidence 234444444 478899999999962 24799999999999998742 34421 332333 333
Q ss_pred CCEEEEEcCCceE
Q 021759 257 EGKIYVVSSGLNV 269 (308)
Q Consensus 257 ~~~l~v~gG~~~~ 269 (308)
+++|||+||....
T Consensus 314 ~~~~~~~gG~~~~ 326 (341)
T PLN02153 314 KNGLLMHGGKLPT 326 (341)
T ss_pred cceEEEEcCcCCC
Confidence 4589999997553
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=9e-33 Score=245.17 Aligned_cols=206 Identities=20% Similarity=0.276 Sum_probs=159.5
Q ss_pred ceEEEEcCCCEEEEEeccCCCC----CCCCceeEEEeCCCCCccccCC-CCCCCcceEEEE-eCCEEEEEcCCCCCC---
Q 021759 56 FACTSLPRQGKLFVLGGMRSDT----ETPMQSTIMYRATTNQWQLASP-MLTPRSFFASGN-VNGKIMAVGGTGANI--- 126 (308)
Q Consensus 56 ~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~--- 126 (308)
+.++++ +++|||+||..... ...++++++||+.+++|+++++ +|.++..|++++ .+++||++||.+...
T Consensus 78 ~~~v~~--~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~ 155 (376)
T PRK14131 78 AVAAFI--DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDG 155 (376)
T ss_pred ceEEEE--CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHH
Confidence 334444 99999999985411 1346889999999999999986 467777788777 799999999975100
Q ss_pred -----------------------------CCCCCeEEEEeCCCCceeeCcCCcC-cccceeEEEECCEEEEEecccCCCC
Q 021759 127 -----------------------------NETMTAVECYDPESDTWTTAAKLRM-GLARYDSAVMGSKMYVTEGWTWPFM 176 (308)
Q Consensus 127 -----------------------------~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~ 176 (308)
....+++++||+.+++|+.++++|. +|..+++++++++|||+||....+.
T Consensus 156 ~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~ 235 (376)
T PRK14131 156 YFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL 235 (376)
T ss_pred HHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc
Confidence 0124789999999999999999996 6888888899999999999764443
Q ss_pred cCCeEE--EEeCCCCceeecccCccCcc--------cee-EEEECCEEEEEeecCC---------------------cce
Q 021759 177 FSPRGG--VYDINKDTWNLMSDGMKEGW--------TGI-SIVLEGKLFVISEHGD---------------------CPM 224 (308)
Q Consensus 177 ~~~~~~--~yd~~~~~W~~~~~~~~~~~--------~~~-~~~~~~~ly~~gg~~~---------------------~~~ 224 (308)
....++ .||+++++|+.+++ ++.++ .+. +++++++||++||.+. ..+
T Consensus 236 ~~~~~~~~~~~~~~~~W~~~~~-~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (376)
T PRK14131 236 RTDAVKQGKFTGNNLKWQKLPD-LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSD 314 (376)
T ss_pred CChhheEEEecCCCcceeecCC-CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeeh
Confidence 444444 45778999999886 33332 122 3678999999999641 136
Q ss_pred EEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCce
Q 021759 225 KQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLN 268 (308)
Q Consensus 225 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~ 268 (308)
++||+++++|+.+..|+.+ |..++++.++++|||+||..+
T Consensus 315 e~yd~~~~~W~~~~~lp~~----r~~~~av~~~~~iyv~GG~~~ 354 (376)
T PRK14131 315 EIYALVNGKWQKVGELPQG----LAYGVSVSWNNGVLLIGGETA 354 (376)
T ss_pred heEEecCCcccccCcCCCC----ccceEEEEeCCEEEEEcCCCC
Confidence 7899999999999988888 788888999999999999654
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.1e-32 Score=244.65 Aligned_cols=235 Identities=16% Similarity=0.240 Sum_probs=170.3
Q ss_pred ceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCC--CCCccccCCCC-CCCcceEEEEeCCEEEEEcCCCCCC----CC
Q 021759 56 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRAT--TNQWQLASPML-TPRSFFASGNVNGKIMAVGGTGANI----NE 128 (308)
Q Consensus 56 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~----~~ 128 (308)
..++++ +++|||+||... +.+++||+. +++|..++++| .+|..+++++++++|||+||.+... ..
T Consensus 32 ~~~~~~--~~~iyv~gG~~~------~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~ 103 (376)
T PRK14131 32 GTGAID--NNTVYVGLGSAG------TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQ 103 (376)
T ss_pred CeEEEE--CCEEEEEeCCCC------CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCcee
Confidence 334444 999999999731 358899986 47899999997 5899999999999999999986201 12
Q ss_pred CCCeEEEEeCCCCceeeCcC-CcCcccceeEEE-ECCEEEEEecccCCC-------------------------------
Q 021759 129 TMTAVECYDPESDTWTTAAK-LRMGLARYDSAV-MGSKMYVTEGWTWPF------------------------------- 175 (308)
Q Consensus 129 ~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~------------------------------- 175 (308)
.++++++||+.+++|+.+++ .|.++.++++++ .+++||++||.....
T Consensus 104 ~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~ 183 (376)
T PRK14131 104 VFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE 183 (376)
T ss_pred EcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence 46889999999999999985 467777777776 899999999975310
Q ss_pred --CcCCeEEEEeCCCCceeecccCccCcccee-EEEECCEEEEEeecC-----Ccce--EEEeCCCCceEEecCCCCCCc
Q 021759 176 --MFSPRGGVYDINKDTWNLMSDGMKEGWTGI-SIVLEGKLFVISEHG-----DCPM--KQYNPDDDTWRYVGGDKFPCE 245 (308)
Q Consensus 176 --~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~ly~~gg~~-----~~~~--~~yd~~~~~W~~~~~~~~~~~ 245 (308)
...+++++||+.+++|+.+.+++..++.++ ++.++++||++||.. ...+ ..||+++++|+.+..|+.++.
T Consensus 184 ~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~ 263 (376)
T PRK14131 184 DYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG 263 (376)
T ss_pred hcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc
Confidence 124789999999999999886333345444 467899999999963 1233 356789999999998876621
Q ss_pred cc----cCCeEEEEeCCEEEEEcCCceEe---------------EEEee-eecCCCceeeeEEe---cCCCccccc
Q 021759 246 VM----HRPFAVNGVEGKIYVVSSGLNVA---------------IGRVY-EEQNGGISAEWKVM---TAPRAFKDL 298 (308)
Q Consensus 246 ~~----~~~~~~~~~~~~l~v~gG~~~~~---------------~~~~~-~~~~~~~~~~W~~~---~~p~~~~~~ 298 (308)
.. +..+.+++.+++|||+||..... ...+. .++||++.++|+.+ +.|+.+...
T Consensus 264 ~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~a 339 (376)
T PRK14131 264 GSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVS 339 (376)
T ss_pred CCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEE
Confidence 00 12233577899999999964311 01111 25699999999865 445555433
No 16
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=221.98 Aligned_cols=231 Identities=15% Similarity=0.237 Sum_probs=185.6
Q ss_pred EEEcCCCEEEEEeccCCCCC---CCCceeEEEeCCCCCccccCC-------------CCCCCcceEEEEeCCEEEEEcCC
Q 021759 59 TSLPRQGKLFVLGGMRSDTE---TPMQSTIMYRATTNQWQLASP-------------MLTPRSFFASGNVNGKIMAVGGT 122 (308)
Q Consensus 59 ~~~~~~~~iyv~GG~~~~~~---~~~~~~~~yd~~~~~W~~~~~-------------~~~~r~~~~~~~~~~~iyv~GG~ 122 (308)
+++.++.+||.|||+-...+ ...-++.++|..+-+|.++++ .|..|++|+++.+++++|+.||.
T Consensus 18 AavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGR 97 (392)
T KOG4693|consen 18 AAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGR 97 (392)
T ss_pred eeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCc
Confidence 33334999999999843221 123468999999999998875 35679999999999999999999
Q ss_pred CCCCCCCCCeEEEEeCCCCceeeC---cCCcCcccceeEEEECCEEEEEecccCC-CCcCCeEEEEeCCCCceeecccC-
Q 021759 123 GANINETMTAVECYDPESDTWTTA---AKLRMGLARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWNLMSDG- 197 (308)
Q Consensus 123 ~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~~~~W~~~~~~- 197 (308)
+ +.....+.++.|||+++.|.+. ..+|.+|.+|++++.++.+||+||+..+ ..++++++++|..|.+|+.+...
T Consensus 98 N-D~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg 176 (392)
T KOG4693|consen 98 N-DDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKG 176 (392)
T ss_pred c-CcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccC
Confidence 7 2466788999999999999864 4688999999999999999999999753 45678999999999999998652
Q ss_pred ccCc--cceeEEEECCEEEEEeecC-------------CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEE
Q 021759 198 MKEG--WTGISIVLEGKLFVISEHG-------------DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYV 262 (308)
Q Consensus 198 ~~~~--~~~~~~~~~~~ly~~gg~~-------------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v 262 (308)
.|++ -...+.++++.+|||||+. .+.+..+|+.|+.|++-.+.+.. +..|+.+++.+++++||+
T Consensus 177 ~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~-P~GRRSHS~fvYng~~Y~ 255 (392)
T KOG4693|consen 177 DPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK-PGGRRSHSTFVYNGKMYM 255 (392)
T ss_pred CCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC-CCcccccceEEEcceEEE
Confidence 2222 2334468899999999986 35799999999999987653322 334999999999999999
Q ss_pred EcCCceEeEEEeee-ecCCCceeeeEEecC
Q 021759 263 VSSGLNVAIGRVYE-EQNGGISAEWKVMTA 291 (308)
Q Consensus 263 ~gG~~~~~~~~~~~-~~~~~~~~~W~~~~~ 291 (308)
|||....-..+..+ +++||.+..|++|.+
T Consensus 256 FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 256 FGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred ecccchhhhhhhcceeecccccchheeeec
Confidence 99976665556666 789999999999855
No 17
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=221.20 Aligned_cols=215 Identities=17% Similarity=0.214 Sum_probs=178.7
Q ss_pred cCCCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccC---CCCCCCcceEEEEeCCEEEEEcCCCCCCC
Q 021759 51 VCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLAS---PMLTPRSFFASGNVNGKIMAVGGTGANIN 127 (308)
Q Consensus 51 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 127 (308)
.+..++|++++..++++|+.||++.+ +..-+.++.|||++++|.+.. .+|.+|.+|+++++++..|+|||+....+
T Consensus 75 VPyqRYGHtvV~y~d~~yvWGGRND~-egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~ 153 (392)
T KOG4693|consen 75 VPYQRYGHTVVEYQDKAYVWGGRNDD-EGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQ 153 (392)
T ss_pred cchhhcCceEEEEcceEEEEcCccCc-ccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHH
Confidence 45667888888889999999999643 356788999999999998754 47999999999999999999999964456
Q ss_pred CCCCeEEEEeCCCCceeeCc---CCcCcccceeEEEECCEEEEEecccCC--------CCcCCeEEEEeCCCCceeeccc
Q 021759 128 ETMTAVECYDPESDTWTTAA---KLRMGLARYDSAVMGSKMYVTEGWTWP--------FMFSPRGGVYDINKDTWNLMSD 196 (308)
Q Consensus 128 ~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~~~~W~~~~~ 196 (308)
..+++++.+|..|.+|+.+. ..|.=|..|+++++++.+||+||..+. ..+.+.+..+|..|+.|...+.
T Consensus 154 ~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~ 233 (392)
T KOG4693|consen 154 RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE 233 (392)
T ss_pred hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence 67899999999999999984 456668999999999999999998642 3456789999999999988765
Q ss_pred --CccCccceeE-EEECCEEEEEeecC------CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCc
Q 021759 197 --GMKEGWTGIS-IVLEGKLFVISEHG------DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGL 267 (308)
Q Consensus 197 --~~~~~~~~~~-~~~~~~ly~~gg~~------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~ 267 (308)
..|.++.+++ .++|+++|+|||++ .++++.|||.+..|..+..-... +..|+..++++.++++|+|||..
T Consensus 234 ~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~-P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 234 NTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKY-PSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred CCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCC-CCcccceeEEEECCEEEEecCCC
Confidence 3455555554 78999999999997 57899999999999988753222 33488899999999999999953
No 18
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5e-31 Score=239.77 Aligned_cols=221 Identities=18% Similarity=0.218 Sum_probs=169.5
Q ss_pred CCCEEEEEeccCCCCCCCCceeEEE--eCCC----CCccccCC---CCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeE
Q 021759 63 RQGKLFVLGGMRSDTETPMQSTIMY--RATT----NQWQLASP---MLTPRSFFASGNVNGKIMAVGGTGANINETMTAV 133 (308)
Q Consensus 63 ~~~~iyv~GG~~~~~~~~~~~~~~y--d~~~----~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 133 (308)
.+++|+.|+|+.. ..++.+-+| ++.+ ++|.++.+ +|.+|..|++++++++||++||.........+++
T Consensus 119 ~~~~ivgf~G~~~---~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v 195 (470)
T PLN02193 119 QGGKIVGFHGRST---DVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHL 195 (470)
T ss_pred cCCeEEEEeccCC---CcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcE
Confidence 4889999999853 235555444 7655 79998876 5889999999999999999999852222345789
Q ss_pred EEEeCCCCceeeCcC---CcC-cccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccC--ccCccceeE-
Q 021759 134 ECYDPESDTWTTAAK---LRM-GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDG--MKEGWTGIS- 206 (308)
Q Consensus 134 ~~yd~~t~~W~~~~~---~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~- 206 (308)
++||+.+++|+.+++ +|. .|..+++++++++|||+||.+.. ...+++++||+.+++|+.++++ .+.++..++
T Consensus 196 ~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~ 274 (470)
T PLN02193 196 YVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSM 274 (470)
T ss_pred EEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEE
Confidence 999999999998764 343 35678889999999999998743 4567999999999999998763 144454444
Q ss_pred EEECCEEEEEeecC----CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeEEEeeeecCCCc
Q 021759 207 IVLEGKLFVISEHG----DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGI 282 (308)
Q Consensus 207 ~~~~~~ly~~gg~~----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~~~~~~ 282 (308)
++.+++||++||.. ..++++||+.+++|+.++..... +..|..+++++++++||++||.......++ ++||++
T Consensus 275 ~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~R~~~~~~~~~gkiyviGG~~g~~~~dv--~~yD~~ 351 (470)
T PLN02193 275 AADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDS-FSIRGGAGLEVVQGKVWVVYGFNGCEVDDV--HYYDPV 351 (470)
T ss_pred EEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCC-CCCCCCcEEEEECCcEEEEECCCCCccCce--EEEECC
Confidence 67899999999975 35789999999999988752111 223788889999999999999654322233 569999
Q ss_pred eeeeEEec
Q 021759 283 SAEWKVMT 290 (308)
Q Consensus 283 ~~~W~~~~ 290 (308)
+++|+.++
T Consensus 352 t~~W~~~~ 359 (470)
T PLN02193 352 QDKWTQVE 359 (470)
T ss_pred CCEEEEec
Confidence 99999873
No 19
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=4.8e-30 Score=238.42 Aligned_cols=215 Identities=14% Similarity=0.172 Sum_probs=170.8
Q ss_pred CEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCcee
Q 021759 65 GKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWT 144 (308)
Q Consensus 65 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~ 144 (308)
..+++.||.. .....+..|++..++|..+++++. +..+++++++++||++||.+. .....+++++||+.+++|.
T Consensus 251 ~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 251 SIIYIHITMS----IFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNK-NNLSVNSVVSYDTKTKSWN 324 (534)
T ss_pred cceEeecccc----hhhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcC-CCCeeccEEEEeCCCCeee
Confidence 3455555542 123456679999999999887663 445788899999999999862 3345678999999999999
Q ss_pred eCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCcccee-EEEECCEEEEEeecC---
Q 021759 145 TAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI-SIVLEGKLFVISEHG--- 220 (308)
Q Consensus 145 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~ly~~gg~~--- 220 (308)
.+++++.+|..+++++++++||++||... ....+++++||+.+++|+.+++ ++.++..+ ++.++++||++||..
T Consensus 325 ~~~~~~~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~~~~~~iYv~GG~~~~~ 402 (534)
T PHA03098 325 KVPELIYPRKNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESKWREEPP-LIFPRYNPCVVNVNNLIYVIGGISKND 402 (534)
T ss_pred ECCCCCcccccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCCC-cCcCCccceEEEECCEEEEECCcCCCC
Confidence 99999999999999999999999999873 4456789999999999999887 44444444 478899999999964
Q ss_pred --CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeE-EEee-eecCCCceeeeEEecC
Q 021759 221 --DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAI-GRVY-EEQNGGISAEWKVMTA 291 (308)
Q Consensus 221 --~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~-~~~~-~~~~~~~~~~W~~~~~ 291 (308)
...+++||+.+++|+.++.++.+ +..++++..+++||++||...... .... .++||+++++|+.++.
T Consensus 403 ~~~~~v~~yd~~t~~W~~~~~~p~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 473 (534)
T PHA03098 403 ELLKTVECFSLNTNKWSKGSPLPIS----HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS 473 (534)
T ss_pred cccceEEEEeCCCCeeeecCCCCcc----ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC
Confidence 25799999999999999988777 888889999999999999643221 0111 2569999999998753
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=4e-30 Score=234.46 Aligned_cols=167 Identities=20% Similarity=0.312 Sum_probs=142.5
Q ss_pred CCCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCC
Q 021759 52 CPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMT 131 (308)
Q Consensus 52 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 131 (308)
+|..++++++ +++||++||... .+.+++|||.+++|..+++||.+|..+++++++++||++||.+ .. .+
T Consensus 308 ~r~~~~~v~~--~~~iYviGG~~~-----~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~--~~--~~ 376 (480)
T PHA02790 308 PRLYASGVPA--NNKLYVVGGLPN-----PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHS--ET--DT 376 (480)
T ss_pred hhhcceEEEE--CCEEEEECCcCC-----CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcC--CC--Cc
Confidence 3444555555 999999999842 2568999999999999999999999999999999999999985 22 36
Q ss_pred eEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECC
Q 021759 132 AVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEG 211 (308)
Q Consensus 132 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 211 (308)
.+++|||.+++|+.+++|+.+|..+++++++++||++||. +++|||++++|+.+++++.++....+++++|
T Consensus 377 ~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~---------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~ 447 (480)
T PHA02790 377 TTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN---------AEFYCESSNTWTLIDDPIYPRDNPELIIVDN 447 (480)
T ss_pred cEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc---------eEEecCCCCcEeEcCCCCCCccccEEEEECC
Confidence 7999999999999999999999999999999999999983 6889999999999987433444455588999
Q ss_pred EEEEEeecC----CcceEEEeCCCCceEEec
Q 021759 212 KLFVISEHG----DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 212 ~ly~~gg~~----~~~~~~yd~~~~~W~~~~ 238 (308)
+||++||.+ ...+++||+++++|+...
T Consensus 448 ~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 448 KLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred EEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 999999975 357999999999998764
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=215.32 Aligned_cols=224 Identities=16% Similarity=0.222 Sum_probs=182.3
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCC---CCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASP---MLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPES 140 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t 140 (308)
++++||+||........-.++|++|..+..|..... .|.+|.+|+++.++++||+|||.+. ....+++++.||+.|
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~-~~~~~~~l~~~d~~t 148 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK-KYRNLNELHSLDLST 148 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC-CCCChhheEeccCCC
Confidence 999999999965432222269999999999987653 5789999999999999999999973 344588999999999
Q ss_pred CceeeCc---CCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc--CccCccceeE-EEECCEEE
Q 021759 141 DTWTTAA---KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD--GMKEGWTGIS-IVLEGKLF 214 (308)
Q Consensus 141 ~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~-~~~~~~ly 214 (308)
++|+.+. ..|.+|.+|++++++++|||+||.+......+++++||+.+.+|.++.. +.|.++.+++ ++.+++++
T Consensus 149 ~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~ 228 (482)
T KOG0379|consen 149 RTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLL 228 (482)
T ss_pred CcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEE
Confidence 9999874 5688999999999999999999998766688999999999999998764 4455555555 78899999
Q ss_pred EEeecC-----CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceE---eEEEeeeecCCCceeee
Q 021759 215 VISEHG-----DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNV---AIGRVYEEQNGGISAEW 286 (308)
Q Consensus 215 ~~gg~~-----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~---~~~~~~~~~~~~~~~~W 286 (308)
++||.+ .++++.+|+.+.+|..+...... +..|..|..+..+++++++||.... ..... +.+|.+...|
T Consensus 229 v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~-p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~--~~l~~~~~~w 305 (482)
T KOG0379|consen 229 VFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDL-PSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDL--YGLDLETLVW 305 (482)
T ss_pred EEeccccCCceecceEeeecccceeeeccccCCC-CCCcceeeeEEECCEEEEEcCCccccccccccc--ccccccccce
Confidence 999876 46899999999999966542221 2339999999999999999997764 23333 5599999999
Q ss_pred EEecC
Q 021759 287 KVMTA 291 (308)
Q Consensus 287 ~~~~~ 291 (308)
..+..
T Consensus 306 ~~~~~ 310 (482)
T KOG0379|consen 306 SKVES 310 (482)
T ss_pred eeeec
Confidence 97643
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=188.28 Aligned_cols=238 Identities=13% Similarity=0.168 Sum_probs=183.2
Q ss_pred cCCCCceEEEEcCCCEEEEEeccCCCC--CCCCceeEEEeCCCCCccccC--CCCCCCcceEEEEe-CCEEEEEcCCCCC
Q 021759 51 VCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQSTIMYRATTNQWQLAS--PMLTPRSFFASGNV-NGKIMAVGGTGAN 125 (308)
Q Consensus 51 ~~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~-~~~iyv~GG~~~~ 125 (308)
++|..+...+-+-.+.|++|||..-++ ....+++|.||..+++|+.+. ..|.||..|.++++ .+.+|+|||.-..
T Consensus 65 spRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS 144 (521)
T KOG1230|consen 65 SPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS 144 (521)
T ss_pred CCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC
Confidence 444455555555567999999985444 235689999999999998875 46899999999888 4899999997321
Q ss_pred C--CC--CCCeEEEEeCCCCceeeC--cCCcCcccceeEEEECCEEEEEecccC---CCCcCCeEEEEeCCCCceeeccc
Q 021759 126 I--NE--TMTAVECYDPESDTWTTA--AKLRMGLARYDSAVMGSKMYVTEGWTW---PFMFSPRGGVYDINKDTWNLMSD 196 (308)
Q Consensus 126 ~--~~--~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~yd~~~~~W~~~~~ 196 (308)
. .+ ...++|+||..+++|+.+ +.-|.+|.+|-+++...+|++|||... +..+.+++++||+.+-+|+++.+
T Consensus 145 Pnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 145 PNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred cchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 2 22 368999999999999987 457899999999999999999999853 45678999999999999999876
Q ss_pred C--ccCccceeE-EEE-CCEEEEEeecC-------------CcceEEEeCCC-----CceEEecCCCCCCccccCCeEEE
Q 021759 197 G--MKEGWTGIS-IVL-EGKLFVISEHG-------------DCPMKQYNPDD-----DTWRYVGGDKFPCEVMHRPFAVN 254 (308)
Q Consensus 197 ~--~~~~~~~~~-~~~-~~~ly~~gg~~-------------~~~~~~yd~~~-----~~W~~~~~~~~~~~~~~~~~~~~ 254 (308)
. -|.++++++ .+. +|.||+.||+. ..+++.++++. -+|+++.+...+ +..|.+++++
T Consensus 225 sga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~k-PspRsgfsv~ 303 (521)
T KOG1230|consen 225 SGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVK-PSPRSGFSVA 303 (521)
T ss_pred CCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCC-CCCCCceeEE
Confidence 3 256676665 334 89999999986 35789999988 579999875444 4449999985
Q ss_pred E-eCCEEEEEcCCceEe--EEEeee------ecCCCceeeeEEe
Q 021759 255 G-VEGKIYVVSSGLNVA--IGRVYE------EQNGGISAEWKVM 289 (308)
Q Consensus 255 ~-~~~~l~v~gG~~~~~--~~~~~~------~~~~~~~~~W~~~ 289 (308)
+ -+++-|+|||..+.. .-++.. +.||..+++|...
T Consensus 304 va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 304 VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 5 577999999975521 111111 5699999999854
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.91 E-value=6.2e-23 Score=186.52 Aligned_cols=201 Identities=21% Similarity=0.242 Sum_probs=158.7
Q ss_pred CCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCC--eEEEEeCCCCceeeC---cCCcCcccceeEEEECCEEEEEeccc
Q 021759 98 SPMLTPRSFFASGNVNGKIMAVGGTGANINETMT--AVECYDPESDTWTTA---AKLRMGLARYDSAVMGSKMYVTEGWT 172 (308)
Q Consensus 98 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~--~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~ 172 (308)
...|.+|..|+++.+++++||+||.. ...... +++++|..+..|... ...|.+|.+|.+++.+++||++||.+
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~--~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYG--SGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCC--CCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 34688999999999999999999986 333333 599999999999875 36778999999999999999999998
Q ss_pred CCCCcCCeEEEEeCCCCceeeccc--CccCcccee-EEEECCEEEEEeecC-----CcceEEEeCCCCceEEecCCCCCC
Q 021759 173 WPFMFSPRGGVYDINKDTWNLMSD--GMKEGWTGI-SIVLEGKLFVISEHG-----DCPMKQYNPDDDTWRYVGGDKFPC 244 (308)
Q Consensus 173 ~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~-~~~~~~~ly~~gg~~-----~~~~~~yd~~~~~W~~~~~~~~~~ 244 (308)
......++++.||+.+.+|..+.. .+|..+.++ +++.+++|||+||.+ .+++++||+++.+|.++......
T Consensus 133 ~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~- 211 (482)
T KOG0379|consen 133 KKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEA- 211 (482)
T ss_pred CCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCC-
Confidence 655667899999999999998765 334455554 478899999999986 46899999999999998763332
Q ss_pred ccccCCeEEEEeCCEEEEEcCCceEeEEEeeeecCCCceeeeEEe------cCCCcccccccc
Q 021759 245 EVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVM------TAPRAFKDLAPS 301 (308)
Q Consensus 245 ~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~~~------~~p~~~~~~~~~ 301 (308)
+..|.+|++++++++++++||+......-.-.+.+|...-+|..+ +.||..+..+..
T Consensus 212 P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~ 274 (482)
T KOG0379|consen 212 PSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS 274 (482)
T ss_pred CCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEE
Confidence 334999999999999999999873322222226799999999854 445665555433
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=1.4e-22 Score=174.82 Aligned_cols=231 Identities=13% Similarity=0.182 Sum_probs=173.4
Q ss_pred cCCCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCcccc---CCCCCCCcceEEEEeCCEEEEEcCCCCCCC
Q 021759 51 VCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLA---SPMLTPRSFFASGNVNGKIMAVGGTGANIN 127 (308)
Q Consensus 51 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 127 (308)
.+|.+||+-++.+..-|.+|||-+ +...+++.+||..+|+|..- .+.|.+...|.++-.+.+||+|||.- +-+
T Consensus 29 vPrpRHGHRAVaikELiviFGGGN---EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMv-EYG 104 (830)
T KOG4152|consen 29 VPRPRHGHRAVAIKELIVIFGGGN---EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMV-EYG 104 (830)
T ss_pred CCCccccchheeeeeeEEEecCCc---ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEe-eec
Confidence 466677776666688999999874 25678899999999999754 35777888888889999999999985 256
Q ss_pred CCCCeEEEEeCCCCceeeCc-------CCcCcccceeEEEECCEEEEEecccCC--------CCcCCeEEEEeCCCC---
Q 021759 128 ETMTAVECYDPESDTWTTAA-------KLRMGLARYDSAVMGSKMYVTEGWTWP--------FMFSPRGGVYDINKD--- 189 (308)
Q Consensus 128 ~~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~~~--- 189 (308)
++.++++-......+|+++. ++|-||-+|+...+++|-|+|||...+ ..+++++++++++-+
T Consensus 105 kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgv 184 (830)
T KOG4152|consen 105 KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGV 184 (830)
T ss_pred cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCce
Confidence 67787766666666787773 456799999999999999999998532 245789999988744
Q ss_pred -ceeeccc--CccCccceeE-EEE------CCEEEEEeecC---CcceEEEeCCCCceEEecC---CCCCCccccCCeEE
Q 021759 190 -TWNLMSD--GMKEGWTGIS-IVL------EGKLFVISEHG---DCPMKQYNPDDDTWRYVGG---DKFPCEVMHRPFAV 253 (308)
Q Consensus 190 -~W~~~~~--~~~~~~~~~~-~~~------~~~ly~~gg~~---~~~~~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~ 253 (308)
.|..... ..+.++.++. +.+ ..++|++||.. ..++|.+|+++.+|++..- .|+| |.-|++
T Consensus 185 v~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlP----RSLHsa 260 (830)
T KOG4152|consen 185 VAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLP----RSLHSA 260 (830)
T ss_pred EEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCC----cccccc
Confidence 4876533 3445555554 333 34699999987 5689999999999997643 4677 999999
Q ss_pred EEeCCEEEEEcCCceEeEEEeee-------------ecCCCceeeeEEe
Q 021759 254 NGVEGKIYVVSSGLNVAIGRVYE-------------EQNGGISAEWKVM 289 (308)
Q Consensus 254 ~~~~~~l~v~gG~~~~~~~~~~~-------------~~~~~~~~~W~~~ 289 (308)
..+++++||+||..-........ -+.+.+..+|+.|
T Consensus 261 ~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 261 TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL 309 (830)
T ss_pred eeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence 99999999999964432222111 3477778999855
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=164.86 Aligned_cols=185 Identities=12% Similarity=0.134 Sum_probs=146.3
Q ss_pred CCCCceEEEEcCCCEEEEEeccCCCC----CCCCceeEEEeCCCCCccccCC--CCCCCcceEEEEeCCEEEEEcCCCCC
Q 021759 52 CPQAFACTSLPRQGKLFVLGGMRSDT----ETPMQSTIMYRATTNQWQLASP--MLTPRSFFASGNVNGKIMAVGGTGAN 125 (308)
Q Consensus 52 ~~~~~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~~yd~~~~~W~~~~~--~~~~r~~~~~~~~~~~iyv~GG~~~~ 125 (308)
+|..+.++++. .+.+|++||..... .....++|.||..+++|.++.. -|.+|.+|.+++...+|++|||....
T Consensus 121 pRsshq~va~~-s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~ 199 (521)
T KOG1230|consen 121 PRSSHQAVAVP-SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS 199 (521)
T ss_pred CCccceeEEec-cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC
Confidence 34444444444 67999999985322 2346889999999999998875 68999999999999999999998422
Q ss_pred CC--CCCCeEEEEeCCCCceeeCcC---CcCcccceeEEEE-CCEEEEEecccC--------CCCcCCeEEEEeCCC---
Q 021759 126 IN--ETMTAVECYDPESDTWTTAAK---LRMGLARYDSAVM-GSKMYVTEGWTW--------PFMFSPRGGVYDINK--- 188 (308)
Q Consensus 126 ~~--~~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~--------~~~~~~~~~~yd~~~--- 188 (308)
.. .+.|++++||+.|-+|.++.+ -|.||++++..+. ++.|||.||+.. .+..+++++.++|..
T Consensus 200 nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~ 279 (521)
T KOG1230|consen 200 NRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGRE 279 (521)
T ss_pred CCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCC
Confidence 22 258999999999999999853 4889999999888 999999999853 355678999999998
Q ss_pred --Cceeeccc--CccCccceeE--EEECCEEEEEeecC-------------CcceEEEeCCCCceEEe
Q 021759 189 --DTWNLMSD--GMKEGWTGIS--IVLEGKLFVISEHG-------------DCPMKQYNPDDDTWRYV 237 (308)
Q Consensus 189 --~~W~~~~~--~~~~~~~~~~--~~~~~~ly~~gg~~-------------~~~~~~yd~~~~~W~~~ 237 (308)
-.|+.+.+ ..|.++.+.+ +.-+++-|.|||.. .++++.||++.++|...
T Consensus 280 dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 280 DKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred cceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 46888876 3455555544 44577999999975 47899999999999864
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=1.2e-20 Score=163.14 Aligned_cols=205 Identities=17% Similarity=0.203 Sum_probs=155.2
Q ss_pred ceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCC-------CCCCCcceEEEEeCCEEEEEcCCCCCCC-
Q 021759 56 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASP-------MLTPRSFFASGNVNGKIMAVGGTGANIN- 127 (308)
Q Consensus 56 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-------~~~~r~~~~~~~~~~~iyv~GG~~~~~~- 127 (308)
||.... +.+||+|||+..-+ ...+++|.+....=.|+++.+ +|.||.+|+...++++.|+|||...+.+
T Consensus 85 ~Gfvcd--GtrilvFGGMvEYG-kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD 161 (830)
T KOG4152|consen 85 FGFVCD--GTRILVFGGMVEYG-KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED 161 (830)
T ss_pred cceEec--CceEEEEccEeeec-cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence 444444 89999999997655 556666554444345677643 5789999999999999999999742121
Q ss_pred ------CCCCeEEEEeCCCC----ceeeC---cCCcCcccceeEEEE------CCEEEEEecccCCCCcCCeEEEEeCCC
Q 021759 128 ------ETMTAVECYDPESD----TWTTA---AKLRMGLARYDSAVM------GSKMYVTEGWTWPFMFSPRGGVYDINK 188 (308)
Q Consensus 128 ------~~~~~~~~yd~~t~----~W~~~---~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~yd~~~ 188 (308)
.+++++++.+.+-+ .|... ..+|.+|..|.++++ ..|+||+||.+ +.++.++|.+|+.+
T Consensus 162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~--G~RLgDLW~Ldl~T 239 (830)
T KOG4152|consen 162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS--GCRLGDLWTLDLDT 239 (830)
T ss_pred cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc--cccccceeEEecce
Confidence 25789999888744 57653 578999999999988 35799999997 66778999999999
Q ss_pred Cceeeccc----CccCccceeEEEECCEEEEEeecC------------------CcceEEEeCCCCceEEecC-----CC
Q 021759 189 DTWNLMSD----GMKEGWTGISIVLEGKLFVISEHG------------------DCPMKQYNPDDDTWRYVGG-----DK 241 (308)
Q Consensus 189 ~~W~~~~~----~~~~~~~~~~~~~~~~ly~~gg~~------------------~~~~~~yd~~~~~W~~~~~-----~~ 241 (308)
.+|.+..- ++++..+ .+..+++|+|+|||.- ..++-++|+++..|+.+-- -.
T Consensus 240 l~W~kp~~~G~~PlPRSLH-sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~t 318 (830)
T KOG4152|consen 240 LTWNKPSLSGVAPLPRSLH-SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNT 318 (830)
T ss_pred eecccccccCCCCCCcccc-cceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccc
Confidence 99987643 3333333 3368999999999974 2467899999999987532 12
Q ss_pred CCCccccCCeEEEEeCCEEEEEcCCce
Q 021759 242 FPCEVMHRPFAVNGVEGKIYVVSSGLN 268 (308)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~l~v~gG~~~ 268 (308)
.| ..|.+|+++.++.+|||-.|++.
T Consensus 319 iP--R~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 319 IP--RARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred cc--cccccceeEEeccEEEEEeccch
Confidence 33 33999999999999999999765
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.80 E-value=4.7e-18 Score=141.58 Aligned_cols=244 Identities=18% Similarity=0.202 Sum_probs=171.7
Q ss_pred CCCCCCCCchHHHHHhhhcCCccccccc-------------------------cCCCCceEEEEcCCCEEEEEeccCCCC
Q 021759 23 TQPLIPGLPDEIGELCLLHVPYPYQALA-------------------------VCPQAFACTSLPRQGKLFVLGGMRSDT 77 (308)
Q Consensus 23 ~~~~~~~lp~~~~~~~l~~~p~~~~~~~-------------------------~~~~~~~~~~~~~~~~iyv~GG~~~~~ 77 (308)
....+|.||..+..-.-+.+--..|.-+ +-..+.+++....+++||++||.....
T Consensus 26 ~a~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~ 105 (381)
T COG3055 26 YAGQLPDLPVGFKNGAGALIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSV 105 (381)
T ss_pred hhccCCCCCccccccccceecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCC
Confidence 3567778887777655444443333322 112222333333399999999985433
Q ss_pred C---CCCceeEEEeCCCCCccccCC-CCCCCcceEEEEeCC-EEEEEcCCCCC---------------------------
Q 021759 78 E---TPMQSTIMYRATTNQWQLASP-MLTPRSFFASGNVNG-KIMAVGGTGAN--------------------------- 125 (308)
Q Consensus 78 ~---~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~-~iyv~GG~~~~--------------------------- 125 (308)
. ...+++++|||.+|+|+++.. .|.....++++.+++ +||++||.+..
T Consensus 106 ~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf 185 (381)
T COG3055 106 SSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYF 185 (381)
T ss_pred CCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHh
Confidence 2 346889999999999999886 466667888888876 99999996410
Q ss_pred -----CCCCCCeEEEEeCCCCceeeCcCCcC-cccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCC--ceeecccC
Q 021759 126 -----INETMTAVECYDPESDTWTTAAKLRM-GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD--TWNLMSDG 197 (308)
Q Consensus 126 -----~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~ 197 (308)
.......+..|+|.++.|+.+...|. ++.+.+.+.-++++.++-|.-.++.++..+.+++...+ +|..+...
T Consensus 186 ~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~l 265 (381)
T COG3055 186 DKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDL 265 (381)
T ss_pred CCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCC
Confidence 01134568899999999999987766 56665555568889999998877888888888887644 69988652
Q ss_pred ccCcc---ceeE----EEECCEEEEEeecC-----------------------CcceEEEeCCCCceEEecCCCCCCccc
Q 021759 198 MKEGW---TGIS----IVLEGKLFVISEHG-----------------------DCPMKQYNPDDDTWRYVGGDKFPCEVM 247 (308)
Q Consensus 198 ~~~~~---~~~~----~~~~~~ly~~gg~~-----------------------~~~~~~yd~~~~~W~~~~~~~~~~~~~ 247 (308)
+.+.. .+.+ -..++.+.+.||-. ..+|+.+| .++|+.+..+|.+
T Consensus 266 p~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~---- 339 (381)
T COG3055 266 PAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQG---- 339 (381)
T ss_pred CCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCC----
Confidence 22211 1111 24578888888764 34677777 8999999988887
Q ss_pred cCCeEEEEeCCEEEEEcCCceEeEE
Q 021759 248 HRPFAVNGVEGKIYVVSSGLNVAIG 272 (308)
Q Consensus 248 ~~~~~~~~~~~~l~v~gG~~~~~~~ 272 (308)
......+..+++||++||.......
T Consensus 340 l~YG~s~~~nn~vl~IGGE~~~Gka 364 (381)
T COG3055 340 LAYGVSLSYNNKVLLIGGETSGGKA 364 (381)
T ss_pred ccceEEEecCCcEEEEccccCCCee
Confidence 6677778899999999998775433
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.65 E-value=3.4e-15 Score=124.63 Aligned_cols=186 Identities=19% Similarity=0.291 Sum_probs=146.0
Q ss_pred cccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCC--CceeeCcCCcC-cccceeEEEECCEEEEEecc
Q 021759 95 QLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPES--DTWTTAAKLRM-GLARYDSAVMGSKMYVTEGW 171 (308)
Q Consensus 95 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~ 171 (308)
..+|++|.+...-+.+.+++.+||-=|.. -.+.+..|+.. ..|++++..|- +|....+++++++||++||.
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~------G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~ 101 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSA------GTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGY 101 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccC------CccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecc
Confidence 45678888888778888899999976643 13456666654 48999988775 78888899999999999998
Q ss_pred cCC----CCcCCeEEEEeCCCCceeecccCccCccceeE-EEECC-EEEEEeecC-------------------------
Q 021759 172 TWP----FMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEG-KLFVISEHG------------------------- 220 (308)
Q Consensus 172 ~~~----~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~-~ly~~gg~~------------------------- 220 (308)
... ....+++++|||++++|+.+....|....++. +.+++ +||++||.+
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 642 23468999999999999999876666666655 56666 899999986
Q ss_pred -------------CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeEEEeeee--cCCCceee
Q 021759 221 -------------DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEE--QNGGISAE 285 (308)
Q Consensus 221 -------------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~--~~~~~~~~ 285 (308)
...+..|||.+++|+.+...|.- .+.+++++.-+++|.+|-|.-....++.+.. .+.....+
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~---~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~ 258 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFY---GNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLK 258 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcCccc---CccCcceeecCCeEEEEcceecCCccccceeEEEeccCcee
Confidence 24689999999999999866654 2677777888999999999988888877774 35556679
Q ss_pred eEEe
Q 021759 286 WKVM 289 (308)
Q Consensus 286 W~~~ 289 (308)
|..+
T Consensus 259 w~~l 262 (381)
T COG3055 259 WLKL 262 (381)
T ss_pred eeec
Confidence 9977
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.44 E-value=3.3e-13 Score=83.50 Aligned_cols=50 Identities=32% Similarity=0.481 Sum_probs=45.7
Q ss_pred CCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcc
Q 021759 103 PRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGL 153 (308)
Q Consensus 103 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 153 (308)
||..|++++++++|||+||... ....++++++||+.+++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~-~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDN-SGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCC-CCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6899999999999999999972 2678999999999999999999999987
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-12 Score=113.69 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=122.4
Q ss_pred CCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCC---CCCCCcceEEEEeCC--EEEEEcCCCC---
Q 021759 53 PQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASP---MLTPRSFFASGNVNG--KIMAVGGTGA--- 124 (308)
Q Consensus 53 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~--~iyv~GG~~~--- 124 (308)
|..|.+....-+++||+.||+ ++...+.++|.|+...+.|..+.. .|..|.+|.++.... ++|++|-+-.
T Consensus 261 RgGHQMV~~~~~~CiYLYGGW--dG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~ 338 (723)
T KOG2437|consen 261 RGGHQMVIDVQTECVYLYGGW--DGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSV 338 (723)
T ss_pred cCcceEEEeCCCcEEEEecCc--ccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccc
Confidence 445555555445699999999 445678999999999999987753 789999999998755 9999998731
Q ss_pred -CCCCCCCeEEEEeCCCCceeeCc------CCcCcccceeEEEECCE--EEEEecccCC--CCcCCeEEEEeCCCCceee
Q 021759 125 -NINETMTAVECYDPESDTWTTAA------KLRMGLARYDSAVMGSK--MYVTEGWTWP--FMFSPRGGVYDINKDTWNL 193 (308)
Q Consensus 125 -~~~~~~~~~~~yd~~t~~W~~~~------~~~~~r~~~~~~~~~~~--iyv~GG~~~~--~~~~~~~~~yd~~~~~W~~ 193 (308)
.......++|.||..++.|..++ .-|.....|.+++.+.+ |||+||...+ ......++.||.+...|..
T Consensus 339 r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~ 418 (723)
T KOG2437|consen 339 RNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL 418 (723)
T ss_pred ccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHH
Confidence 11224578999999999999874 23556678888888777 9999998542 2345689999999999987
Q ss_pred cccC---------ccCccceeE---EEECCEEEEEeecC
Q 021759 194 MSDG---------MKEGWTGIS---IVLEGKLFVISEHG 220 (308)
Q Consensus 194 ~~~~---------~~~~~~~~~---~~~~~~ly~~gg~~ 220 (308)
+... ....+-+++ +.-++++|++||..
T Consensus 419 l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 419 LREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 6531 112222333 34478899999975
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.25 E-value=1.9e-11 Score=75.57 Aligned_cols=49 Identities=29% Similarity=0.544 Sum_probs=41.6
Q ss_pred CCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCC
Q 021759 53 PQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR 104 (308)
Q Consensus 53 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 104 (308)
|..++++++ +++|||+||.... ...++++++||+++++|+++++||.+|
T Consensus 2 R~~~s~v~~--~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVV--GGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEE--CCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 445566665 9999999999654 477899999999999999999999987
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.21 E-value=6.9e-12 Score=109.10 Aligned_cols=176 Identities=14% Similarity=0.139 Sum_probs=127.4
Q ss_pred CCCccccCC----------CCCCCcceEEEEeC--CEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCc---CCcCcccc
Q 021759 91 TNQWQLASP----------MLTPRSFFASGNVN--GKIMAVGGTGANINETMTAVECYDPESDTWTTAA---KLRMGLAR 155 (308)
Q Consensus 91 ~~~W~~~~~----------~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~ 155 (308)
+.+|.++++ -|..|.+|-++... ++||+.||.+ +-+.+.+.|.|+...+.|+.+. ..|-.|..
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd--G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD--GTQDLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc--cchhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 446877654 25678899999875 4999999998 8888999999999999999873 47888999
Q ss_pred eeEEEEC--CEEEEEecccCC-----CCcCCeEEEEeCCCCceeecccCcc------CccceeEEEECCE--EEEEeecC
Q 021759 156 YDSAVMG--SKMYVTEGWTWP-----FMFSPRGGVYDINKDTWNLMSDGMK------EGWTGISIVLEGK--LFVISEHG 220 (308)
Q Consensus 156 ~~~~~~~--~~iyv~GG~~~~-----~~~~~~~~~yd~~~~~W~~~~~~~~------~~~~~~~~~~~~~--ly~~gg~~ 220 (308)
|-++... .|+|++|-+-+. .....++|+||..++.|.-+..... .-.-+..++...+ |||+||..
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 9988764 599999987431 2334689999999999998864111 1112234566666 99999975
Q ss_pred -------CcceEEEeCCCCceEEecCCC------CCCccccCCeEE--EEeCCEEEEEcCCce
Q 021759 221 -------DCPMKQYNPDDDTWRYVGGDK------FPCEVMHRPFAV--NGVEGKIYVVSSGLN 268 (308)
Q Consensus 221 -------~~~~~~yd~~~~~W~~~~~~~------~~~~~~~~~~~~--~~~~~~l~v~gG~~~ 268 (308)
...+++||.....|..+..-- ......|.++.+ ...+.++|++||...
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 346899999999998765410 000122555555 344678999999544
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.19 E-value=1.6e-11 Score=74.95 Aligned_cols=47 Identities=38% Similarity=0.629 Sum_probs=42.1
Q ss_pred CCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCc
Q 021759 103 PRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLR 150 (308)
Q Consensus 103 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 150 (308)
||.+|++++++++||++||.+. .....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999972 3678999999999999999999886
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.17 E-value=6.2e-11 Score=72.78 Aligned_cols=49 Identities=27% Similarity=0.481 Sum_probs=43.8
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEe
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV 112 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 112 (308)
+++|||+||....+...++++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 5789999999744567899999999999999999999999999999864
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.11 E-value=2.2e-10 Score=70.31 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=43.7
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 161 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 161 (308)
+++|||+||.+......++++++||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 5799999999744567789999999999999999999999999999863
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.10 E-value=3.5e-10 Score=69.39 Aligned_cols=48 Identities=27% Similarity=0.443 Sum_probs=42.0
Q ss_pred CCcceEEEEeCCEEEEEcCC-CCCCCCCCCeEEEEeCCCCceeeCcCCc
Q 021759 103 PRSFFASGNVNGKIMAVGGT-GANINETMTAVECYDPESDTWTTAAKLR 150 (308)
Q Consensus 103 ~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 150 (308)
+|..|++++++++|||+||. ........+++++||+.+++|+++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999999999999999 2125667899999999999999998775
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.06 E-value=3e-10 Score=69.16 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=41.2
Q ss_pred cccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc
Q 021759 152 GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD 196 (308)
Q Consensus 152 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~ 196 (308)
||.++++++++++||++||.+......+++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 588999999999999999999767888999999999999999886
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.01 E-value=3e-10 Score=69.85 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=31.2
Q ss_pred CCcceEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCc
Q 021759 103 PRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLR 150 (308)
Q Consensus 103 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 150 (308)
||.+|+++.+ +++|||+||.+. ....++++++||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~-~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS-SGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCC-CCcccCCEEEEECCCCEEEECCCCC
Confidence 6899999998 599999999972 2358999999999999999998877
No 39
>smart00612 Kelch Kelch domain.
Probab=98.99 E-value=9.8e-10 Score=66.81 Aligned_cols=47 Identities=32% Similarity=0.548 Sum_probs=42.0
Q ss_pred EEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEECC
Q 021759 115 KIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGS 163 (308)
Q Consensus 115 ~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 163 (308)
+||++||.+ .....+++++||+.+++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFD--GGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCC--CCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 589999986 45668999999999999999999999999999988764
No 40
>smart00612 Kelch Kelch domain.
Probab=98.91 E-value=2.5e-09 Score=65.00 Aligned_cols=47 Identities=34% Similarity=0.617 Sum_probs=41.2
Q ss_pred EEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCC
Q 021759 66 KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNG 114 (308)
Q Consensus 66 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 114 (308)
+||++||... ...++++++||+.+++|.++++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG--GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC--CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4899999853 3568899999999999999999999999999988764
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.88 E-value=6.6e-09 Score=63.70 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=39.9
Q ss_pred cccceeEEEECCEEEEEecc--cCCCCcCCeEEEEeCCCCceeeccc
Q 021759 152 GLARYDSAVMGSKMYVTEGW--TWPFMFSPRGGVYDINKDTWNLMSD 196 (308)
Q Consensus 152 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~~~~W~~~~~ 196 (308)
+|..|++++++++|||+||. .......+++++||+++++|+.++.
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 58899999999999999999 3356677899999999999999875
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.84 E-value=4.9e-09 Score=64.35 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=31.0
Q ss_pred cccceeEEEE-CCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc
Q 021759 152 GLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD 196 (308)
Q Consensus 152 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~ 196 (308)
||.+|+++.. +++||++||.+......+++++||+++++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 6889999988 59999999998776788999999999999999965
No 43
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.82 E-value=7.6e-07 Score=73.29 Aligned_cols=146 Identities=14% Similarity=0.236 Sum_probs=96.6
Q ss_pred eEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCC----CceeeCc-CCcCcccceeE
Q 021759 84 TIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPES----DTWTTAA-KLRMGLARYDS 158 (308)
Q Consensus 84 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~~~r~~~~~ 158 (308)
...||+.+++++.+......-+...+..-+|++++.||.. . ....+..|+|.+ ..|.+.+ .|..+|-+.++
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~--~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDN--D--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCC--c--cccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 4569999999998874333322222233489999999985 2 345677888876 5798875 58999999998
Q ss_pred EEE-CCEEEEEecccCCCCcCCeEEEEeCCCC-----ceeeccc---CccCccceeE-EEECCEEEEEeecCCcceEEEe
Q 021759 159 AVM-GSKMYVTEGWTWPFMFSPRGGVYDINKD-----TWNLMSD---GMKEGWTGIS-IVLEGKLFVISEHGDCPMKQYN 228 (308)
Q Consensus 159 ~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~-----~W~~~~~---~~~~~~~~~~-~~~~~~ly~~gg~~~~~~~~yd 228 (308)
..+ ||+++|+||... ...+.+.+... .|..+.. ..+..++-.. +.-+|+||+++.. ...+||
T Consensus 124 ~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---~s~i~d 195 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---GSIIYD 195 (243)
T ss_pred eECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---CcEEEe
Confidence 886 899999999762 23343433221 1222221 1222233233 4569999999964 678999
Q ss_pred CCCCce-EEecCCC
Q 021759 229 PDDDTW-RYVGGDK 241 (308)
Q Consensus 229 ~~~~~W-~~~~~~~ 241 (308)
+.++++ +.++.+|
T Consensus 196 ~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 196 YKTNTVVRTLPDLP 209 (243)
T ss_pred CCCCeEEeeCCCCC
Confidence 999987 6777544
No 44
>PLN02772 guanylate kinase
Probab=98.74 E-value=9.5e-08 Score=83.38 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=68.2
Q ss_pred CCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeC---cCCcCcccceeEEEE-CCEEEEEecccCCCCc
Q 021759 102 TPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTA---AKLRMGLARYDSAVM-GSKMYVTEGWTWPFMF 177 (308)
Q Consensus 102 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 177 (308)
.++.+++++.+++++||+||.+. .....+.+++||+.|++|..- ...|.+|.+|+++++ +++|+|+++-.. .
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d-~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~---~ 98 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHE-GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA---P 98 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCC-CccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC---C
Confidence 58889999999999999999872 333678999999999999864 578999999999988 789999976432 2
Q ss_pred CCeEEEEeCCCC
Q 021759 178 SPRGGVYDINKD 189 (308)
Q Consensus 178 ~~~~~~yd~~~~ 189 (308)
.+++|.+...|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 367777766654
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.64 E-value=9.3e-08 Score=56.34 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=35.9
Q ss_pred CCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC
Q 021759 100 MLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD 141 (308)
Q Consensus 100 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 141 (308)
+|.+|..|+++.++++|||+||.+...+...+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 478999999999999999999997324667899999998763
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.58 E-value=5.9e-06 Score=68.09 Aligned_cols=149 Identities=9% Similarity=0.130 Sum_probs=89.7
Q ss_pred CeEEEEeCCCCceeeCcCCcCccccee-EEEECCEEEEEecccCCCCcCCeEEEEeCCC----Cceeeccc-CccCccce
Q 021759 131 TAVECYDPESDTWTTAAKLRMGLARYD-SAVMGSKMYVTEGWTWPFMFSPRGGVYDINK----DTWNLMSD-GMKEGWTG 204 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~~~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~----~~W~~~~~-~~~~~~~~ 204 (308)
.....||+.+++++.+... .-....+ +..-+|++++.||... -...+..|++.+ ..|.+... +...+|+.
T Consensus 46 a~s~~yD~~tn~~rpl~v~-td~FCSgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQ-TDTFCSGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred EEEEEEecCCCcEEeccCC-CCCcccCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 4467899999999876532 2222222 2234899999999753 235678888865 57988765 34455555
Q ss_pred eE-EEECCEEEEEeecCCcceEEEeCCCC-----ceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeEEEeeeec
Q 021759 205 IS-IVLEGKLFVISEHGDCPMKQYNPDDD-----TWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQ 278 (308)
Q Consensus 205 ~~-~~~~~~ly~~gg~~~~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~~ 278 (308)
.. ..-||+++|+||......+.+..... .|..+.......+.....+..+.-+|+||+++.... ..
T Consensus 122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--------~i 193 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--------II 193 (243)
T ss_pred cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--------EE
Confidence 55 34599999999986333343333221 122222211111122555667788999999998432 33
Q ss_pred CCCceeee-EEecC
Q 021759 279 NGGISAEW-KVMTA 291 (308)
Q Consensus 279 ~~~~~~~W-~~~~~ 291 (308)
||...+++ +.+|.
T Consensus 194 ~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 194 YDYKTNTVVRTLPD 207 (243)
T ss_pred EeCCCCeEEeeCCC
Confidence 77777766 45543
No 47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.53 E-value=4.4e-05 Score=63.28 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=105.9
Q ss_pred ceeEEEeCCCCCccccCCCCCCCc---c-eEEEEeCC-----EEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCc
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRS---F-FASGNVNG-----KIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG 152 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~---~-~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 152 (308)
..++++||.|++|..+|..+.++. . .....++. ||..+.... .+.....+++|+..+++|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~--~~~~~~~~~Vys~~~~~Wr~~~~~~~~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS--GNRNQSEHQVYTLGSNSWRTIECSPPH 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec--CCCCCccEEEEEeCCCCccccccCCCC
Confidence 468999999999999986544211 1 11112222 455554331 122346789999999999998643221
Q ss_pred -ccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceee-cccCccCc--c-ceeEEEECCEEEEEeecC---Ccce
Q 021759 153 -LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNL-MSDGMKEG--W-TGISIVLEGKLFVISEHG---DCPM 224 (308)
Q Consensus 153 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~--~-~~~~~~~~~~ly~~gg~~---~~~~ 224 (308)
......+.++|.||-+...... .....+..||..+++|.+ ++.|.... . ....+.++|+|.++.... .-++
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~I 170 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDL 170 (230)
T ss_pred ccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEE
Confidence 1122266789999988753311 111279999999999995 65422211 1 122367789998876532 2356
Q ss_pred EEEe-CCCCceEEecCCCCC-CccccC--CeEEEEeCCEEEEEcCC
Q 021759 225 KQYN-PDDDTWRYVGGDKFP-CEVMHR--PFAVNGVEGKIYVVSSG 266 (308)
Q Consensus 225 ~~yd-~~~~~W~~~~~~~~~-~~~~~~--~~~~~~~~~~l~v~gG~ 266 (308)
|+.+ ....+|+++-.++.+ ...... ....+..+++|++....
T Consensus 171 Wvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~ 216 (230)
T TIGR01640 171 WVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED 216 (230)
T ss_pred EEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC
Confidence 6665 345679976443321 001111 12335667888887763
No 48
>PF13854 Kelch_5: Kelch motif
Probab=98.48 E-value=4.2e-07 Score=53.54 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=35.7
Q ss_pred CcCcccceeEEEECCEEEEEecccC-CCCcCCeEEEEeCCC
Q 021759 149 LRMGLARYDSAVMGSKMYVTEGWTW-PFMFSPRGGVYDINK 188 (308)
Q Consensus 149 ~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~~ 188 (308)
+|.+|..|++++++++||++||... .....+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999984 677789999999876
No 49
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.41 E-value=5e-05 Score=62.99 Aligned_cols=155 Identities=8% Similarity=0.083 Sum_probs=91.9
Q ss_pred CeEEEEeCCCCceeeCcCCcCccc---c-eeEEEEC-----CEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccC-
Q 021759 131 TAVECYDPESDTWTTAAKLRMGLA---R-YDSAVMG-----SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKE- 200 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~~~~~~~r~---~-~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 200 (308)
..+.++||.|++|..+|+.+.++. . ..+..++ -||..+...... .....+++|+..+++|+.+....+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccCCCCc
Confidence 468999999999999986544211 1 1122222 256555443211 1335789999999999988742211
Q ss_pred ccceeEEEECCEEEEEeecC---C-cceEEEeCCCCceEE-ecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeEEEee
Q 021759 201 GWTGISIVLEGKLFVISEHG---D-CPMKQYNPDDDTWRY-VGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVY 275 (308)
Q Consensus 201 ~~~~~~~~~~~~ly~~gg~~---~-~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~ 275 (308)
......+.++|.||-+.... . ..+..||+++.+|+. ++ +|...........++..+|+|.++........-+++
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IW 171 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLW 171 (230)
T ss_pred cccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCCcEEEE
Confidence 11112578899999886432 1 269999999999995 53 222211112245677889999988753222223444
Q ss_pred eecCCCceeeeEE
Q 021759 276 EEQNGGISAEWKV 288 (308)
Q Consensus 276 ~~~~~~~~~~W~~ 288 (308)
... |.+..+|++
T Consensus 172 vl~-d~~~~~W~k 183 (230)
T TIGR01640 172 VLN-DAGKQEWSK 183 (230)
T ss_pred EEC-CCCCCceeE
Confidence 432 233346985
No 50
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=98.38 E-value=5e-05 Score=66.66 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=82.7
Q ss_pred eCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcC----CeEEEE--e
Q 021759 112 VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFS----PRGGVY--D 185 (308)
Q Consensus 112 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~~~~y--d 185 (308)
.+++|+.++.. ....+||+.+..-...|.++.+.....++.++++||++.......... ..++++ +
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 58999998654 338899999998888888888777777788899999998764321110 044555 4
Q ss_pred C--------CCCceeecccCccCcc-------ceeEEEE-CCEEEE-EeecCCcceEEEeCCCCceEEecCCCCC
Q 021759 186 I--------NKDTWNLMSDGMKEGW-------TGISIVL-EGKLFV-ISEHGDCPMKQYNPDDDTWRYVGGDKFP 243 (308)
Q Consensus 186 ~--------~~~~W~~~~~~~~~~~-------~~~~~~~-~~~ly~-~gg~~~~~~~~yd~~~~~W~~~~~~~~~ 243 (308)
+ ....|+.+++++.... ...-+++ +..|+| +.+. ....+.||+++.+|+.++...+|
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-~~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-RWGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC-ceEEEEEEcCCcceeeccceecC
Confidence 2 2336888876332221 1122556 566887 3332 12589999999999999986555
No 51
>PLN02772 guanylate kinase
Probab=98.28 E-value=6.1e-06 Score=72.27 Aligned_cols=83 Identities=22% Similarity=0.190 Sum_probs=61.9
Q ss_pred cCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc--CccCccceeE-EEE-CCEEEEEeecC--Ccc
Q 021759 150 RMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD--GMKEGWTGIS-IVL-EGKLFVISEHG--DCP 223 (308)
Q Consensus 150 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~-~~~-~~~ly~~gg~~--~~~ 223 (308)
..++..++++++++++||+||.++.....+.+++||+.+++|..... ..|.++.+++ +.+ +++|+|+++.. ..+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~ 101 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDS 101 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccc
Confidence 34788899999999999999987644467899999999999987653 4555555554 444 78999997543 456
Q ss_pred eEEEeCCCC
Q 021759 224 MKQYNPDDD 232 (308)
Q Consensus 224 ~~~yd~~~~ 232 (308)
+|.+...|.
T Consensus 102 ~w~l~~~t~ 110 (398)
T PLN02772 102 IWFLEVDTP 110 (398)
T ss_pred eEEEEcCCH
Confidence 776666553
No 52
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.27 E-value=0.0001 Score=60.68 Aligned_cols=117 Identities=17% Similarity=0.095 Sum_probs=78.0
Q ss_pred EEEEeccCCCCCCCCceeEEEeCCCCC--------c---cccCCCCCCCcceEEEEe--C--CEEEEEcCCCC--CC---
Q 021759 67 LFVLGGMRSDTETPMQSTIMYRATTNQ--------W---QLASPMLTPRSFFASGNV--N--GKIMAVGGTGA--NI--- 126 (308)
Q Consensus 67 iyv~GG~~~~~~~~~~~~~~yd~~~~~--------W---~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~--~~--- 126 (308)
.++-||+++++ ...+.+|+....+.. . ..+...|.+|++|++.++ . .-+.+|||+.. .+
T Consensus 41 YlIHGGrTPNN-ElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 41 YLIHGGRTPNN-ELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred EEecCCcCCCc-ccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 45558888766 667778876554432 1 124568999999998776 2 34778899741 01
Q ss_pred -------CCCCCeEEEEeCCCCcee--eCcCCcCcccceeEEEECCEEEEEecccCC-CCcCCeEEEE
Q 021759 127 -------NETMTAVECYDPESDTWT--TAAKLRMGLARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVY 184 (308)
Q Consensus 127 -------~~~~~~~~~yd~~t~~W~--~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~y 184 (308)
-+....++.+|++-+..+ .++.+..+...|.+.+-++.||++||..-. ..+...+++.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rl 187 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRL 187 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEE
Confidence 124567888888777554 356677788889999999999999998532 2233344444
No 53
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.03 E-value=0.0012 Score=54.72 Aligned_cols=104 Identities=12% Similarity=0.141 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCCCCCCeEEEEeCCCCc--------e---eeCcCCcCcccceeEEEE--C--CEEEEEecccC--C----
Q 021759 116 IMAVGGTGANINETMTAVECYDPESDT--------W---TTAAKLRMGLARYDSAVM--G--SKMYVTEGWTW--P---- 174 (308)
Q Consensus 116 iyv~GG~~~~~~~~~~~~~~yd~~t~~--------W---~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~--~---- 174 (308)
-++-||..+ +++-..++++....+.. . ..+.+.|.+|++|++-++ . ....+|||+.- .
T Consensus 41 YlIHGGrTP-NNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 41 YLIHGGRTP-NNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred EEecCCcCC-CcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 344588873 55566777776664432 1 124689999999998665 2 34778899741 0
Q ss_pred -------CCcCCeEEEEeCCCCceeeccc-CccCccceeE-EEECCEEEEEeecC
Q 021759 175 -------FMFSPRGGVYDINKDTWNLMSD-GMKEGWTGIS-IVLEGKLFVISEHG 220 (308)
Q Consensus 175 -------~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~-~~~~~~ly~~gg~~ 220 (308)
......++..|++-+..+.-.- .+..+.+.+. .+-++.+|++||+.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 1223567888888887754332 2445555554 56789999999985
No 54
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.97 E-value=0.0034 Score=55.24 Aligned_cols=120 Identities=19% Similarity=0.276 Sum_probs=82.0
Q ss_pred CCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCC---CCeEEEE--e
Q 021759 63 RQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINET---MTAVECY--D 137 (308)
Q Consensus 63 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~---~~~~~~y--d 137 (308)
.+++|+.++.. ..+.+||..+..-...|.|+.+.....++.++++||++.......... ...+|.+ +
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 48999999543 347899999998888888888777777788899999998764111110 0144444 4
Q ss_pred C--------CCCceeeCcCCcCcccc-------eeEEEE-CCEEEE-EecccCCCCcCCeEEEEeCCCCceeeccc
Q 021759 138 P--------ESDTWTTAAKLRMGLAR-------YDSAVM-GSKMYV-TEGWTWPFMFSPRGGVYDINKDTWNLMSD 196 (308)
Q Consensus 138 ~--------~t~~W~~~~~~~~~r~~-------~~~~~~-~~~iyv-~GG~~~~~~~~~~~~~yd~~~~~W~~~~~ 196 (308)
+ ....|+.+|+.|..+.. .+-+++ +..|+| +.+.. ...+.||+.+.+|+....
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccc
Confidence 2 23367888877765432 233455 677888 43321 358999999999999866
No 55
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.64 E-value=0.0054 Score=52.02 Aligned_cols=167 Identities=17% Similarity=0.275 Sum_probs=95.3
Q ss_pred EEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE-ECCEEEEEecccCCCCcCCeEEEEeCCCCceeecc
Q 021759 117 MAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV-MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMS 195 (308)
Q Consensus 117 yv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~ 195 (308)
||-|-....+.-....+-.||+.+.+|.....--.... ..+.. -++++|+.|-..........+..||..+.+|+.+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 44444442233357889999999999998754422211 12222 37788887765544434568999999999998887
Q ss_pred cCc---cCccceeEEE---ECCEEEEEeecC--CcceEEEeCCCCceEEecCCCCCCccccCCeEE------------EE
Q 021759 196 DGM---KEGWTGISIV---LEGKLFVISEHG--DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAV------------NG 255 (308)
Q Consensus 196 ~~~---~~~~~~~~~~---~~~~ly~~gg~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~------------~~ 255 (308)
... .++....... -..++++.|... ...+..| +..+|+.+..-.+.....-....+ ..
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~ 158 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLF 158 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccccccCCCCEEEEEEEEecccccccccccc
Confidence 622 1121111122 134577766533 3356666 467999887611111111111112 22
Q ss_pred eCCEEEEEcCCce-EeEEEeeeecCCCceeeeEE
Q 021759 256 VEGKIYVVSSGLN-VAIGRVYEEQNGGISAEWKV 288 (308)
Q Consensus 256 ~~~~l~v~gG~~~-~~~~~~~~~~~~~~~~~W~~ 288 (308)
.+++++++-|... ...+.+....||- ..|..
T Consensus 159 ~~~~~Llv~G~l~~~~~G~~saalydG--~~w~P 190 (281)
T PF12768_consen 159 DSDQVLLVTGSLNLPDFGNASAALYDG--TSWTP 190 (281)
T ss_pred CCCcEEEEEeeEecCCCCcEEEEEECC--CEEEE
Confidence 4677888888644 3445555567887 57874
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.56 E-value=0.057 Score=48.62 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=89.6
Q ss_pred eeEEEeCCCCC--ccccCCCCC--CCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC--ceeeCcCCcCc----
Q 021759 83 STIMYRATTNQ--WQLASPMLT--PRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD--TWTTAAKLRMG---- 152 (308)
Q Consensus 83 ~~~~yd~~~~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~---- 152 (308)
.++.+|+.+++ |+.-...+. .+...+-+..++.+|+..+. ..+..+|+.++ .|+.--..+..
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~--------g~v~a~d~~~G~~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN--------GRVSAVLMEQGQLIWQQRISQPTGATEI 242 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC--------CEEEEEEccCChhhheeccccCCCccch
Confidence 47888888774 765433221 12223334456777664432 34777888776 47642111111
Q ss_pred -c---cceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc--eeecccCccCccceeEEEECCEEEEEeecCCcceEE
Q 021759 153 -L---ARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQ 226 (308)
Q Consensus 153 -r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~ 226 (308)
+ ...+.++.++.+|+.+.. ..+.++|+.+++ |+.--. . ....+..+++||+... ...+++
T Consensus 243 ~~~~~~~~sP~v~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~-~----~~~~~~~~~~vy~~~~--~g~l~a 308 (394)
T PRK11138 243 DRLVDVDTTPVVVGGVVYALAYN-------GNLVALDLRSGQIVWKREYG-S----VNDFAVDGGRIYLVDQ--NDRVYA 308 (394)
T ss_pred hcccccCCCcEEECCEEEEEEcC-------CeEEEEECCCCCEEEeecCC-C----ccCcEEECCEEEEEcC--CCeEEE
Confidence 1 112345668999986532 478999998774 865321 1 1123567899999775 448999
Q ss_pred EeCCCCc--eEEecCCCCCCccccCCeEEEEeCCEEEEEcC
Q 021759 227 YNPDDDT--WRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSS 265 (308)
Q Consensus 227 yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG 265 (308)
+|+++++ |+.-. ... +...+.+..+++||+...
T Consensus 309 ld~~tG~~~W~~~~--~~~----~~~~sp~v~~g~l~v~~~ 343 (394)
T PRK11138 309 LDTRGGVELWSQSD--LLH----RLLTAPVLYNGYLVVGDS 343 (394)
T ss_pred EECCCCcEEEcccc--cCC----CcccCCEEECCEEEEEeC
Confidence 9998764 76421 111 223344567899988654
No 57
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.55 E-value=0.033 Score=46.52 Aligned_cols=199 Identities=17% Similarity=0.162 Sum_probs=107.8
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEe--CCEEEEEcCCCCCCCCCCCeEEEEeCCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESD 141 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 141 (308)
++.||+.- ..-..++++|+.+++-..+... . ..+++.. ++++|+..... ..++|+.++
T Consensus 11 ~g~l~~~D-------~~~~~i~~~~~~~~~~~~~~~~-~---~~G~~~~~~~g~l~v~~~~~---------~~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVD-------IPGGRIYRVDPDTGEVEVIDLP-G---PNGMAFDRPDGRLYVADSGG---------IAVVDPDTG 70 (246)
T ss_dssp TTEEEEEE-------TTTTEEEEEETTTTEEEEEESS-S---EEEEEEECTTSEEEEEETTC---------EEEEETTTT
T ss_pred CCEEEEEE-------cCCCEEEEEECCCCeEEEEecC-C---CceEEEEccCCEEEEEEcCc---------eEEEecCCC
Confidence 68888883 2346799999998865543322 2 2333333 78999887654 567799999
Q ss_pred ceeeCcCCc-----CcccceeEEEECCEEEEEecccCCCCcC--CeEEEEeCCCCceeecccCccCccceeEEEECCE-E
Q 021759 142 TWTTAAKLR-----MGLARYDSAVMGSKMYVTEGWTWPFMFS--PRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-L 213 (308)
Q Consensus 142 ~W~~~~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l 213 (308)
+++.+...+ ..+.+-.++.-+|++|+-.-........ ..++++++. ++.+.+... .....+.+..-+++ |
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchhe
Confidence 998875543 2233333444578888864322111111 579999998 666555431 22223334444565 6
Q ss_pred EEEeecCCcceEEEeCCCCc--eEEecCC-CCCCccccCCeEEEE-eCCEEEEEcCCceEeEEEeeeecCCCceeeeEEe
Q 021759 214 FVISEHGDCPMKQYNPDDDT--WRYVGGD-KFPCEVMHRPFAVNG-VEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVM 289 (308)
Q Consensus 214 y~~gg~~~~~~~~yd~~~~~--W~~~~~~-~~~~~~~~~~~~~~~-~~~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~~~ 289 (308)
|+..- ....+++||+.... +...... ..+.. ....-++++ -+|.||+..-. .+.+ .++|++...-..+
T Consensus 149 yv~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~~~----~~~I--~~~~p~G~~~~~i 220 (246)
T PF08450_consen 149 YVADS-FNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVADWG----GGRI--VVFDPDGKLLREI 220 (246)
T ss_dssp EEEET-TTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEEET----TTEE--EEEETTSCEEEEE
T ss_pred eeccc-ccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEEcC----CCEE--EEECCCccEEEEE
Confidence 66543 36679999986433 4322211 12200 011234444 37889987311 1122 2366665555666
Q ss_pred cCC
Q 021759 290 TAP 292 (308)
Q Consensus 290 ~~p 292 (308)
+.|
T Consensus 221 ~~p 223 (246)
T PF08450_consen 221 ELP 223 (246)
T ss_dssp E-S
T ss_pred cCC
Confidence 666
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.45 E-value=0.052 Score=48.84 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=90.6
Q ss_pred eeEEEeCCCC--CccccCCCCCC-----C---cceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC--ceeeCcCCc
Q 021759 83 STIMYRATTN--QWQLASPMLTP-----R---SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD--TWTTAAKLR 150 (308)
Q Consensus 83 ~~~~yd~~~~--~W~~~~~~~~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~ 150 (308)
.++.+|+.++ .|+.-...+.. | ...+-+..++.+|+.+.. ..++.+|+.++ .|+.- ..
T Consensus 216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~--------g~l~ald~~tG~~~W~~~--~~ 285 (394)
T PRK11138 216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN--------GNLVALDLRSGQIVWKRE--YG 285 (394)
T ss_pred EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC--------CeEEEEECCCCCEEEeec--CC
Confidence 4778888877 47642111110 1 123445568999986532 35889999887 48652 11
Q ss_pred CcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc--eeecccCccCccceeEEEECCEEEEEeecCCcceEEEe
Q 021759 151 MGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYN 228 (308)
Q Consensus 151 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd 228 (308)
.. ...+..+++||+.... ..++++|+.+++ |+.-. .........+..++.||+... ...++++|
T Consensus 286 ~~---~~~~~~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v~~g~l~v~~~--~G~l~~ld 351 (394)
T PRK11138 286 SV---NDFAVDGGRIYLVDQN-------DRVYALDTRGGVELWSQSD--LLHRLLTAPVLYNGYLVVGDS--EGYLHWIN 351 (394)
T ss_pred Cc---cCcEEECCEEEEEcCC-------CeEEEEECCCCcEEEcccc--cCCCcccCCEEECCEEEEEeC--CCEEEEEE
Confidence 11 1245678999997542 479999998764 86422 111112223567999988654 34789999
Q ss_pred CCCCc--eEEecCCCCCCccccCCeEEEEeCCEEEEEcC
Q 021759 229 PDDDT--WRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSS 265 (308)
Q Consensus 229 ~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG 265 (308)
+++++ |+.-- ... ......+..+++||+..-
T Consensus 352 ~~tG~~~~~~~~--~~~----~~~s~P~~~~~~l~v~t~ 384 (394)
T PRK11138 352 REDGRFVAQQKV--DSS----GFLSEPVVADDKLLIQAR 384 (394)
T ss_pred CCCCCEEEEEEc--CCC----cceeCCEEECCEEEEEeC
Confidence 98876 54311 111 223344667888888754
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.43 E-value=0.06 Score=48.08 Aligned_cols=153 Identities=18% Similarity=0.130 Sum_probs=88.4
Q ss_pred eeEEEeCCCC--CccccCCCCCC-----C---cceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC--ceeeCcCCc
Q 021759 83 STIMYRATTN--QWQLASPMLTP-----R---SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD--TWTTAAKLR 150 (308)
Q Consensus 83 ~~~~yd~~~~--~W~~~~~~~~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~ 150 (308)
.++.+|+.++ .|+.-...+.. | ...+.+..++.||+.... ..++.||+.++ .|+.- ..
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~--------g~l~a~d~~tG~~~W~~~--~~ 270 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ--------GRVAALDLRSGRVLWKRD--AS 270 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC--------CEEEEEECCCCcEEEeec--cC
Confidence 5788998877 47542211111 1 122334558888886432 35889999876 47542 11
Q ss_pred CcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc--eeecccCccCccceeEEEECCEEEEEeecCCcceEEEe
Q 021759 151 MGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYN 228 (308)
Q Consensus 151 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd 228 (308)
.....++.+++||+.... ..++++|..+++ |+.-. +........+..+++||+... ...++++|
T Consensus 271 ---~~~~p~~~~~~vyv~~~~-------G~l~~~d~~tG~~~W~~~~--~~~~~~ssp~i~g~~l~~~~~--~G~l~~~d 336 (377)
T TIGR03300 271 ---SYQGPAVDDNRLYVTDAD-------GVVVALDRRSGSELWKNDE--LKYRQLTAPAVVGGYLVVGDF--EGYLHWLS 336 (377)
T ss_pred ---CccCceEeCCEEEEECCC-------CeEEEEECCCCcEEEcccc--ccCCccccCEEECCEEEEEeC--CCEEEEEE
Confidence 122344568999986432 479999998764 76522 111112222456888887543 44799999
Q ss_pred CCCCc--eEEecCCCCCCccccCCeEEEEeCCEEEEEcC
Q 021759 229 PDDDT--WRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSS 265 (308)
Q Consensus 229 ~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG 265 (308)
+++++ |+. +.+.. ......+..+++||+.+.
T Consensus 337 ~~tG~~~~~~----~~~~~--~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 337 REDGSFVARL----KTDGS--GIASPPVVVGDGLLVQTR 369 (377)
T ss_pred CCCCCEEEEE----EcCCC--ccccCCEEECCEEEEEeC
Confidence 98765 432 12200 223444777888887665
No 60
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.36 E-value=0.03 Score=46.54 Aligned_cols=190 Identities=16% Similarity=0.228 Sum_probs=109.4
Q ss_pred eEEEeCCCCCccccCCCCCCCcceEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCc-CCcCcccceeEEEE
Q 021759 84 TIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAA-KLRMGLARYDSAVM 161 (308)
Q Consensus 84 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~ 161 (308)
+=.+||.+++-...+ ++..-+-|.+++- ++..++.-+. ..+-++|+++.+-++.+ +...+-.+.-..++
T Consensus 85 iGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Witd~~--------~aI~R~dpkt~evt~f~lp~~~a~~nlet~vf 155 (353)
T COG4257 85 IGHLDPATGEVETYP-LGSGASPHGIVVGPDGSAWITDTG--------LAIGRLDPKTLEVTRFPLPLEHADANLETAVF 155 (353)
T ss_pred ceecCCCCCceEEEe-cCCCCCCceEEECCCCCeeEecCc--------ceeEEecCcccceEEeecccccCCCcccceee
Confidence 455788888776665 4444444555554 5667765332 26889999888766653 22233344445566
Q ss_pred C--CEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeec--------------------
Q 021759 162 G--SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEH-------------------- 219 (308)
Q Consensus 162 ~--~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~-------------------- 219 (308)
| +.++..|-.. ---++||.++.-+..+.+.....++.++.-++.+|...-.
T Consensus 156 D~~G~lWFt~q~G-------~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P 228 (353)
T COG4257 156 DPWGNLWFTGQIG-------AYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQP 228 (353)
T ss_pred CCCccEEEeeccc-------cceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCC
Confidence 4 5677665422 1115566665554444433344444445555555544110
Q ss_pred -----------------------CCcceEEEeCCCCceEEecCCCCCCccccCCeEE-EEeCCEEEEEcCCceEeEEEee
Q 021759 220 -----------------------GDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAV-NGVEGKIYVVSSGLNVAIGRVY 275 (308)
Q Consensus 220 -----------------------~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~v~gG~~~~~~~~~~ 275 (308)
....+.+||+.+.+|.+-+ +|... -+...+ +--.|++++--= ..+.+
T Consensus 229 ~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eyp---LPgs~-arpys~rVD~~grVW~sea----~agai- 299 (353)
T COG4257 229 NALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP---LPGSK-ARPYSMRVDRHGRVWLSEA----DAGAI- 299 (353)
T ss_pred CcccccccccccCccCcEEEeccCCceeeEeCcccccceeee---CCCCC-CCcceeeeccCCcEEeecc----ccCce-
Confidence 0346889999999998763 55222 333444 333466665332 22233
Q ss_pred eecCCCceeeeEEecCCCcccccc
Q 021759 276 EEQNGGISAEWKVMTAPRAFKDLA 299 (308)
Q Consensus 276 ~~~~~~~~~~W~~~~~p~~~~~~~ 299 (308)
.++|+++.+-++++.|++..+..
T Consensus 300 -~rfdpeta~ftv~p~pr~n~gn~ 322 (353)
T COG4257 300 -GRFDPETARFTVLPIPRPNSGNI 322 (353)
T ss_pred -eecCcccceEEEecCCCCCCCce
Confidence 34999999999999988877643
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.34 E-value=0.065 Score=44.21 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=92.9
Q ss_pred eeEEEeCCCC--CccccCCCCCCCcceE--EEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCc--eeeCcCCcCcccce
Q 021759 83 STIMYRATTN--QWQLASPMLTPRSFFA--SGNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMGLARY 156 (308)
Q Consensus 83 ~~~~yd~~~~--~W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~ 156 (308)
.+.++|+.++ .|+.-. ........ .+..++++|+..+. ..++.+|+.+++ |+.-. +.+ ...
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~~--------~~l~~~d~~tG~~~W~~~~--~~~-~~~ 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASGD--------GNLYALDAKTGKVLWRFDL--PGP-ISG 70 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEETT--------SEEEEEETTTSEEEEEEEC--SSC-GGS
T ss_pred EEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcCC--------CEEEEEECCCCCEEEEeec--ccc-ccc
Confidence 4677787766 476522 11222223 34478999988432 569999998874 65432 222 122
Q ss_pred eEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc--eee-cccCccC-ccceeE-EEECCEEEEEeecCCcceEEEeCCC
Q 021759 157 DSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNL-MSDGMKE-GWTGIS-IVLEGKLFVISEHGDCPMKQYNPDD 231 (308)
Q Consensus 157 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~-~~~~~~~-~~~~~~-~~~~~~ly~~gg~~~~~~~~yd~~~ 231 (308)
.....+++||+...- ..+..+|..+++ |+. ....... ...... ...++.+|+... ...+..+|+++
T Consensus 71 ~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~l~~~d~~t 141 (238)
T PF13360_consen 71 APVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--SGKLVALDPKT 141 (238)
T ss_dssp GEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--CSEEEEEETTT
T ss_pred eeeecccccccccce-------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec--cCcEEEEecCC
Confidence 247789999987632 379999987764 983 4321111 122222 344666766553 45899999998
Q ss_pred Cc--eEEecCCCCCCcc----ccCCeEEEEeCCEEEEEcCCce
Q 021759 232 DT--WRYVGGDKFPCEV----MHRPFAVNGVEGKIYVVSSGLN 268 (308)
Q Consensus 232 ~~--W~~~~~~~~~~~~----~~~~~~~~~~~~~l~v~gG~~~ 268 (308)
++ |+.-...+..... ......++..++.||+..+...
T Consensus 142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 184 (238)
T PF13360_consen 142 GKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR 184 (238)
T ss_dssp TEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS
T ss_pred CcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe
Confidence 75 7664332111000 0112344555788999887543
No 62
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.21 E-value=0.073 Score=45.24 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=73.0
Q ss_pred EEEEEeccCCCCCCCCceeEEEeCCCCCccccCCC-CCCCcceEEEE-eC-CEEEEEcCCCCCCCCCCCeEEEEeCCCCc
Q 021759 66 KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPM-LTPRSFFASGN-VN-GKIMAVGGTGANINETMTAVECYDPESDT 142 (308)
Q Consensus 66 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 142 (308)
.+|+.++.. ..+.+||+.+++-...-.. ..++ .+.. -+ ..+|+.++.+ ..+.+||..+.+
T Consensus 2 ~~~~s~~~d-------~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~-------~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKD-------NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS-------DTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCC-------CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC-------CeEEEEECCCCc
Confidence 467776542 3678889877653222111 1121 2222 23 4567776543 568899998876
Q ss_pred eee-CcCCcCcccceeEEE-EC-CEEEEEecccCCCCcCCeEEEEeCCCCce-eecccCccCccceeEEEECCEEEEEee
Q 021759 143 WTT-AAKLRMGLARYDSAV-MG-SKMYVTEGWTWPFMFSPRGGVYDINKDTW-NLMSDGMKEGWTGISIVLEGKLFVISE 218 (308)
Q Consensus 143 W~~-~~~~~~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~ly~~gg 218 (308)
... ++....+ ...+. -+ +.+|+.++.+ ..+.+||+.+..- ..+.. ..........-++++++++.
T Consensus 65 ~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 65 VIGTLPSGPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred EEEeccCCCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEe
Confidence 543 2211111 12222 23 4566665432 4789999987542 12211 11112222334677777765
Q ss_pred cCCcceEEEeCCCCce
Q 021759 219 HGDCPMKQYNPDDDTW 234 (308)
Q Consensus 219 ~~~~~~~~yd~~~~~W 234 (308)
.....+..||.++.+-
T Consensus 134 ~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 134 ETTNMAHFIDTKTYEI 149 (300)
T ss_pred cCCCeEEEEeCCCCeE
Confidence 4334567788876553
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.13 E-value=0.11 Score=42.82 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=97.2
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCC--ccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQ--WQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD 141 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 141 (308)
++.+|+..+ ...++++|..+++ |+.-.+ .+-... ....+++||+.... +.++.+|..++
T Consensus 36 ~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~~--~~~~~~-~~~~~~~v~v~~~~--------~~l~~~d~~tG 96 (238)
T PF13360_consen 36 GGRVYVASG--------DGNLYALDAKTGKVLWRFDLP--GPISGA-PVVDGGRVYVGTSD--------GSLYALDAKTG 96 (238)
T ss_dssp TTEEEEEET--------TSEEEEEETTTSEEEEEEECS--SCGGSG-EEEETTEEEEEETT--------SEEEEEETTTS
T ss_pred CCEEEEEcC--------CCEEEEEECCCCCEEEEeecc--ccccce-eeecccccccccce--------eeeEecccCCc
Confidence 888888832 3468999998884 654432 221111 46778999888632 36999998877
Q ss_pred --cee-eCcCCcC--cccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc--eeecccCccCc--------cceeE
Q 021759 142 --TWT-TAAKLRM--GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEG--------WTGIS 206 (308)
Q Consensus 142 --~W~-~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~--------~~~~~ 206 (308)
.|+ .....+. ........+.++.+|+.... ..+.++|+++++ |+.-....+.. ..+..
T Consensus 97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-------GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-------SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEE
T ss_pred ceeeeeccccccccccccccCceEecCEEEEEecc-------CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccce
Confidence 587 3332222 22333444557777776531 589999999875 76533311111 11222
Q ss_pred EEECCEEEEEeecCCcceEEEeCCCCc--eEEecCCCCCCccccCCeEEEEeCCEEEEEc
Q 021759 207 IVLEGKLFVISEHGDCPMKQYNPDDDT--WRYVGGDKFPCEVMHRPFAVNGVEGKIYVVS 264 (308)
Q Consensus 207 ~~~~~~ly~~gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~g 264 (308)
+..++.+|+..+.. .+..+|.++++ |+.. . . .........++.||+..
T Consensus 170 ~~~~~~v~~~~~~g--~~~~~d~~tg~~~w~~~-~---~----~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 170 VISDGRVYVSSGDG--RVVAVDLATGEKLWSKP-I---S----GIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp ECCTTEEEEECCTS--SEEEEETTTTEEEEEEC-S---S-----ECECEECCCTEEEEEE
T ss_pred EEECCEEEEEcCCC--eEEEEECCCCCEEEEec-C---C----CccCCceeeCCEEEEEe
Confidence 34468888887643 46777999987 8432 1 1 11122456677787777
No 64
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.08 E-value=0.011 Score=50.19 Aligned_cols=108 Identities=17% Similarity=0.353 Sum_probs=65.1
Q ss_pred cCCeEEEEeCCCCceeecccCccCccceeEEE-ECCEEEEEeecC-----CcceEEEeCCCCceEEecC-C--CCCCccc
Q 021759 177 FSPRGGVYDINKDTWNLMSDGMKEGWTGISIV-LEGKLFVISEHG-----DCPMKQYNPDDDTWRYVGG-D--KFPCEVM 247 (308)
Q Consensus 177 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~-----~~~~~~yd~~~~~W~~~~~-~--~~~~~~~ 247 (308)
....+..||+.+.+|..+... ..+....... -+++||+.|-.. ...+..||.++.+|+.+.. . .+|.+
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp-- 90 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP-- 90 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc--
Confidence 467899999999999988763 2222222233 378888877543 4568999999999998876 2 23311
Q ss_pred cCCeEEEEeC-CEEEEEcCCceEeEEEeeeecCCCceeeeEEecCC
Q 021759 248 HRPFAVNGVE-GKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTAP 292 (308)
Q Consensus 248 ~~~~~~~~~~-~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~~~~~p 292 (308)
.....+...| +++++.|.. .. +..+-..||. .+|..+..+
T Consensus 91 v~a~~~~~~d~~~~~~aG~~-~~--g~~~l~~~dG--s~W~~i~~~ 131 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRS-AN--GSTFLMKYDG--SSWSSIGSD 131 (281)
T ss_pred EEEEEeeccCCceEEEecee-cC--CCceEEEEcC--CceEecccc
Confidence 1112222223 456666654 22 2223334655 688877653
No 65
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.95 E-value=0.095 Score=43.76 Aligned_cols=181 Identities=11% Similarity=0.065 Sum_probs=109.3
Q ss_pred CCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCc
Q 021759 63 RQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDT 142 (308)
Q Consensus 63 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 142 (308)
.++.+|..-|..+ .+.+.+||+.+++-.+..++|..-.+=.++.++++||.+==. ....++||+.+
T Consensus 54 ~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-------~~~~f~yd~~t-- 119 (264)
T PF05096_consen 54 DDGTLYESTGLYG-----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-------EGTGFVYDPNT-- 119 (264)
T ss_dssp ETTEEEEEECSTT-----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-------SSEEEEEETTT--
T ss_pred CCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-------CCeEEEEcccc--
Confidence 3789999888732 567899999999876666677766677889999999998322 36689999975
Q ss_pred eeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCcee-ecccC---ccCccceeEEEECCEEEEEee
Q 021759 143 WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN-LMSDG---MKEGWTGISIVLEGKLFVISE 218 (308)
Q Consensus 143 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~---~~~~~~~~~~~~~~~ly~~gg 218 (308)
.+.+...+.+..+.+.+.-+..+++--|. +.++.+||++-+=. .+... .+-..-.---.++|.||.==
T Consensus 120 l~~~~~~~y~~EGWGLt~dg~~Li~SDGS-------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANV- 191 (264)
T PF05096_consen 120 LKKIGTFPYPGEGWGLTSDGKRLIMSDGS-------SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANV- 191 (264)
T ss_dssp TEEEEEEE-SSS--EEEECSSCEEEE-SS-------SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEE-
T ss_pred ceEEEEEecCCcceEEEcCCCEEEEECCc-------cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEe-
Confidence 56666666667888888777888887774 58999999864321 12211 11111111235688887632
Q ss_pred cCCcceEEEeCCCCc---eEEecCCCC----CCc---cccCCeEEEE--eCCEEEEEcC
Q 021759 219 HGDCPMKQYNPDDDT---WRYVGGDKF----PCE---VMHRPFAVNG--VEGKIYVVSS 265 (308)
Q Consensus 219 ~~~~~~~~yd~~~~~---W~~~~~~~~----~~~---~~~~~~~~~~--~~~~l~v~gG 265 (308)
...+.|.+.||++++ |-.+..+.. ... ..-.--+++. ..+++||-|=
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 337789999999987 444433211 000 0122335555 4677888775
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.90 E-value=0.11 Score=43.31 Aligned_cols=165 Identities=16% Similarity=0.212 Sum_probs=89.1
Q ss_pred CceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCC---CCcce--EEEEeCCEEEEEcCCCCCCCCC
Q 021759 55 AFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLT---PRSFF--ASGNVNGKIMAVGGTGANINET 129 (308)
Q Consensus 55 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~r~~~--~~~~~~~~iyv~GG~~~~~~~~ 129 (308)
..++++...++.+|+.... ...++|+.+++++.+...+. +.... .++.-+|+||+-.-... ....
T Consensus 42 ~~G~~~~~~~g~l~v~~~~---------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~-~~~~ 111 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSG---------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGG-GASG 111 (246)
T ss_dssp EEEEEEECTTSEEEEEETT---------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCB-CTTC
T ss_pred CceEEEEccCCEEEEEEcC---------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCC-cccc
Confidence 3455555347888888533 24667999999888776531 22333 33333788888643220 1111
Q ss_pred C--CeEEEEeCCCCceeeCcCCcCcccceeEEEECC-EEEEEecccCCCCcCCeEEEEeCCCCc--eeeccc--CccCc-
Q 021759 130 M--TAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSD--GMKEG- 201 (308)
Q Consensus 130 ~--~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~--~~~~~- 201 (308)
. ..++++++. ++.+.+... ....+--+...++ .+|+.--. ...+++|++.... +..... ..+..
T Consensus 112 ~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (246)
T PF08450_consen 112 IDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADSF------NGRIWRFDLDADGGELSNRRVFIDFPGGP 183 (246)
T ss_dssp GGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEETT------TTEEEEEEEETTTCCEEEEEEEEE-SSSS
T ss_pred ccccceEEECCC-CeEEEEecC-cccccceEECCcchheeecccc------cceeEEEeccccccceeeeeeEEEcCCCC
Confidence 2 679999998 655544321 1122222233355 57775433 2579999986433 332211 11111
Q ss_pred --cceeEEEECCEEEEEeecCCcceEEEeCCCCceEEec
Q 021759 202 --WTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 202 --~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~ 238 (308)
.-+.++-.++.||+..-. ...|.+||++...-..+.
T Consensus 184 g~pDG~~vD~~G~l~va~~~-~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWG-GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEET-TTEEEEEETTSCEEEEEE
T ss_pred cCCCcceEcCCCCEEEEEcC-CCEEEEECCCccEEEEEc
Confidence 222333347899997532 669999999955555553
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.82 E-value=0.18 Score=44.73 Aligned_cols=146 Identities=10% Similarity=0.076 Sum_probs=86.1
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCc---ceEEEEeCCE-EEEEcCCCCCCCCCCCeEEEEeCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRS---FFASGNVNGK-IMAVGGTGANINETMTAVECYDPE 139 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~---~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~ 139 (308)
...+.+.+|.+ ..-.+|..|-+.|. .+.++...+. ...... +|. ..+++|.. .=++.||..
T Consensus 224 ~~plllvaG~d-----~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rr-------ky~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLD-----GTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRR-------KYLYSYDLE 288 (514)
T ss_pred CCceEEEecCC-----CcEEEEEecCccCh--hheeeeeccCccceeeecC-CCceEEEecccc-------eEEEEeecc
Confidence 45688888883 24467778888776 4444433222 222222 444 77777764 568999999
Q ss_pred CCceeeCcCCcC-c-cccee-EEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEEC-CEEEE
Q 021759 140 SDTWTTAAKLRM-G-LARYD-SAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLE-GKLFV 215 (308)
Q Consensus 140 t~~W~~~~~~~~-~-r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~ly~ 215 (308)
+.+-+++.++-. + +...- .+..++.+.++.|.. ..|..+...|+.|----. +...-...+...+ ..|++
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEE
Confidence 998888765422 1 12111 234456666666655 467777777777732110 2222222223334 44888
Q ss_pred EeecCCcceEEEeCCCCc
Q 021759 216 ISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 216 ~gg~~~~~~~~yd~~~~~ 233 (308)
.||.+ .|+++|+..++
T Consensus 362 ~~~~G--eV~v~nl~~~~ 377 (514)
T KOG2055|consen 362 SGGTG--EVYVWNLRQNS 377 (514)
T ss_pred EcCCc--eEEEEecCCcc
Confidence 88865 99999999885
No 68
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.76 E-value=0.38 Score=42.94 Aligned_cols=142 Identities=14% Similarity=0.174 Sum_probs=81.4
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCC--CccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTN--QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD 141 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 141 (308)
++.+|+.+.. ..+++||+.++ .|+.--.- +...+.+..++.+|+.. .+ ..++.+|+.++
T Consensus 65 ~~~v~v~~~~--------g~v~a~d~~tG~~~W~~~~~~---~~~~~p~v~~~~v~v~~-~~-------g~l~ald~~tG 125 (377)
T TIGR03300 65 GGKVYAADAD--------GTVVALDAETGKRLWRVDLDE---RLSGGVGADGGLVFVGT-EK-------GEVIALDAEDG 125 (377)
T ss_pred CCEEEEECCC--------CeEEEEEccCCcEeeeecCCC---CcccceEEcCCEEEEEc-CC-------CEEEEEECCCC
Confidence 8888877432 35899998877 48643221 11223344577777643 32 46899998776
Q ss_pred --ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc--eeecccCccC--ccceeEEEECCEEEE
Q 021759 142 --TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKE--GWTGISIVLEGKLFV 215 (308)
Q Consensus 142 --~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--~~~~~~~~~~~~ly~ 215 (308)
.|+.-. +.. .....+..++++|+..+. ..+..+|+++++ |+.-...... ......+..++.+|+
T Consensus 126 ~~~W~~~~--~~~-~~~~p~v~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~ 195 (377)
T TIGR03300 126 KELWRAKL--SSE-VLSPPLVANGLVVVRTND-------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV 195 (377)
T ss_pred cEeeeecc--Cce-eecCCEEECCEEEEECCC-------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE
Confidence 476432 111 112234467888775431 468999998764 8653321111 111222456776654
Q ss_pred EeecCCcceEEEeCCCC--ceEE
Q 021759 216 ISEHGDCPMKQYNPDDD--TWRY 236 (308)
Q Consensus 216 ~gg~~~~~~~~yd~~~~--~W~~ 236 (308)
+.. ...+..+|++++ .|+.
T Consensus 196 -~~~-~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 196 -GFA-GGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred -ECC-CCEEEEEEccCCCEeeee
Confidence 332 457999999876 4764
No 69
>PRK13684 Ycf48-like protein; Provisional
Probab=96.46 E-value=0.55 Score=41.25 Aligned_cols=160 Identities=8% Similarity=0.087 Sum_probs=81.7
Q ss_pred eEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEE-EeCCCCceeeCcCCcCcccceeEEE-E
Q 021759 84 TIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVEC-YDPESDTWTTAAKLRMGLARYDSAV-M 161 (308)
Q Consensus 84 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~-yd~~t~~W~~~~~~~~~r~~~~~~~-~ 161 (308)
+++=+-.-.+|+.+.... .-..+.+....+..|++.|.. ..++. .|....+|+.+.. +..+.-.+++. -
T Consensus 154 i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~-------G~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~ 224 (334)
T PRK13684 154 IYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSR-------GNFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQP 224 (334)
T ss_pred EEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCC-------ceEEEEcCCCCCeEEEeeC-CCcccceeeeEcC
Confidence 344444456899877533 223344444444444443332 11222 2344457988753 33333333333 4
Q ss_pred CCEEEEEecccCCCCcCCeEEEEe--CCCCceeecccCccCc-cceeE--EEECCEEEEEeecCCcceEEEeCCCCceEE
Q 021759 162 GSKMYVTEGWTWPFMFSPRGGVYD--INKDTWNLMSDGMKEG-WTGIS--IVLEGKLFVISEHGDCPMKQYNPDDDTWRY 236 (308)
Q Consensus 162 ~~~iyv~GG~~~~~~~~~~~~~yd--~~~~~W~~~~~~~~~~-~~~~~--~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~ 236 (308)
+++++++|.. ...++. -.-.+|+.+..+.... ..-.. +.-++.+|++|... .+..-.....+|+.
T Consensus 225 ~g~~~~vg~~--------G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G--~v~~S~d~G~tW~~ 294 (334)
T PRK13684 225 DGNLWMLARG--------GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG--TLLVSKDGGKTWEK 294 (334)
T ss_pred CCCEEEEecC--------CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC--eEEEeCCCCCCCeE
Confidence 6788888652 223342 2234799765421211 11122 22367788887642 44444445579998
Q ss_pred ecC-CCCCCccccCCeEEEE-eCCEEEEEcCC
Q 021759 237 VGG-DKFPCEVMHRPFAVNG-VEGKIYVVSSG 266 (308)
Q Consensus 237 ~~~-~~~~~~~~~~~~~~~~-~~~~l~v~gG~ 266 (308)
+.. -..+ .....++. .++++|++|..
T Consensus 295 ~~~~~~~~----~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 295 DPVGEEVP----SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred CCcCCCCC----cceEEEEEeCCCceEEECCC
Confidence 753 2233 33445544 47788888864
No 70
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.40 E-value=0.28 Score=41.06 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=107.8
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeC-----CCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRA-----TTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDP 138 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~-----~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~ 138 (308)
+++||++.+..++ .++.|.- ..++..+.-.||.+-.+.+.++.+|.+|---. ..+.+.+||.
T Consensus 30 ~~~iy~~~~~~~~------~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-------~s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGN------TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-------NSRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCC------EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-------CCceEEEEEC
Confidence 5688988776321 4555532 23333444446666667777888888887533 3588999999
Q ss_pred CCCcee---eCcCCcC------cccc---eeEEEECCEEEEEecccCCCCcCCeEEEEeCCCC----ceeecccCccCcc
Q 021759 139 ESDTWT---TAAKLRM------GLAR---YDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD----TWNLMSDGMKEGW 202 (308)
Q Consensus 139 ~t~~W~---~~~~~~~------~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~~~ 202 (308)
.+++-. .++.... .... .-.++-++-|+|+-....... .-.+-..||.+- +|.. ..+.+.
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T---~~~k~~ 172 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNT---SYPKRS 172 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEe---ccCchh
Confidence 998544 3432111 1111 223444566777755432221 124566777654 4542 245555
Q ss_pred ceeEEEECCEEEEEeecC---CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEe---CCEEEEEcCC
Q 021759 203 TGISIVLEGKLFVISEHG---DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGV---EGKIYVVSSG 266 (308)
Q Consensus 203 ~~~~~~~~~~ly~~gg~~---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~v~gG~ 266 (308)
.+.+..+=|.||++.... ..-.++||+.+++=..+. ++++. .....+.+.+ +.+||+.--+
T Consensus 173 ~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~-i~f~~--~~~~~~~l~YNP~dk~LY~wd~G 239 (250)
T PF02191_consen 173 AGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVS-IPFPN--PYGNISMLSYNPRDKKLYAWDNG 239 (250)
T ss_pred hcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceecee-eeecc--ccCceEeeeECCCCCeEEEEECC
Confidence 566677789999998765 234589999988765443 34441 1333444444 7789988754
No 71
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.36 E-value=0.16 Score=44.25 Aligned_cols=121 Identities=10% Similarity=0.106 Sum_probs=75.8
Q ss_pred CeEEEEeCCCC-----ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc-eeecccCccCccce
Q 021759 131 TAVECYDPESD-----TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT-WNLMSDGMKEGWTG 204 (308)
Q Consensus 131 ~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~ 204 (308)
..+.+|+.... +++.+......-.-.+.+.+++++.+.-| +.+.+|+...+. +..... .......
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~-~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAF-YDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEE-E-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhhe-ecceEEE
Confidence 67899999884 55655544444445566677999777666 588999988887 776665 3222233
Q ss_pred e-EEEECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEe-CCEEEEEcC
Q 021759 205 I-SIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGV-EGKIYVVSS 265 (308)
Q Consensus 205 ~-~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~gG 265 (308)
. ....++.|++-.-...-.+..|+.+..+...++.-..+ +...++..+ ++. .++++
T Consensus 133 ~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~----~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 133 TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP----RWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-----BEEEEEEEE-SSS-EEEEE
T ss_pred EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC----ccEEEEEEecCCc-EEEEE
Confidence 3 35678877765554455667888877778887753444 444555555 665 44444
No 72
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.22 E-value=1.7 Score=44.39 Aligned_cols=142 Identities=11% Similarity=0.184 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCC----------cC--cccce-eEEE-EC-CEEEEEecccCCCCc
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL----------RM--GLARY-DSAV-MG-SKMYVTEGWTWPFMF 177 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~----------~~--~r~~~-~~~~-~~-~~iyv~GG~~~~~~~ 177 (308)
++.+||....+ +.+++||+.++.......- .. ..... ..++ -+ +.|||....+
T Consensus 694 ~g~LyVad~~~-------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n----- 761 (1057)
T PLN02919 694 NEKVYIAMAGQ-------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES----- 761 (1057)
T ss_pred CCeEEEEECCC-------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----
Confidence 67899876543 6688899877654332110 00 00111 1222 23 4599986644
Q ss_pred CCeEEEEeCCCCceeeccc--C-----c--------------cCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEE
Q 021759 178 SPRGGVYDINKDTWNLMSD--G-----M--------------KEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRY 236 (308)
Q Consensus 178 ~~~~~~yd~~~~~W~~~~~--~-----~--------------~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~ 236 (308)
+.+.+||+.++....+.. + . .....+.++.-++.||+.... ...|.+||++++..+.
T Consensus 762 -~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 762 -SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-NHKIKKLDPATKRVTT 839 (1057)
T ss_pred -CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-CCEEEEEECCCCeEEE
Confidence 689999988765322110 0 0 001122234456789998754 6789999999988876
Q ss_pred ecCCCCCC--------ccccCCeEEEE-eCCEEEEEcCCce
Q 021759 237 VGGDKFPC--------EVMHRPFAVNG-VEGKIYVVSSGLN 268 (308)
Q Consensus 237 ~~~~~~~~--------~~~~~~~~~~~-~~~~l~v~gG~~~ 268 (308)
+.....+. .......+++. -+|+|||.....+
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 65432110 01123345544 4788999876544
No 73
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.20 E-value=0.91 Score=41.00 Aligned_cols=146 Identities=11% Similarity=-0.055 Sum_probs=78.9
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 161 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 161 (308)
..++++|..+++-..+..........+...-+.+|++....+ ....++.+|..++..+.+.......... ....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~ 287 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSP 287 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC-----CCccEEEEECCCCCEEECCCCCCCCCCE-EECC
Confidence 468889988876655554332222222211234566554332 2357899999888777664332211111 1122
Q ss_pred CC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecC--CcceEEEeCCCCceEEec
Q 021759 162 GS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHG--DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 162 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~--~~~~~~yd~~~~~W~~~~ 238 (308)
++ +|++.....+ ...++++|..+..++.+.. ...........-+++.+++.... ...++.+|+.+..++.+.
T Consensus 288 dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 288 DGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 44 4555433221 2479999998888776643 11111122233466655554432 347999999987777665
No 74
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.08 E-value=0.49 Score=39.64 Aligned_cols=115 Identities=9% Similarity=0.070 Sum_probs=68.5
Q ss_pred EEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCc-ccce--eEEEECCEEEEEecccCCCCcCCeEEEEe
Q 021759 109 SGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG-LARY--DSAVMGSKMYVTEGWTWPFMFSPRGGVYD 185 (308)
Q Consensus 109 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 185 (308)
++.-++.+|+..=. -+-+-+.||.+..=+.++. |.+ .... .-+--.+++++-- .....+++||
T Consensus 195 ~atpdGsvwyasla-------gnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~witt------wg~g~l~rfd 260 (353)
T COG4257 195 CATPDGSVWYASLA-------GNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITT------WGTGSLHRFD 260 (353)
T ss_pred EECCCCcEEEEecc-------ccceEEcccccCCcceecC-CCcccccccccccCccCcEEEec------cCCceeeEeC
Confidence 33448888876222 2446778888775444432 222 1111 1122357777751 1225899999
Q ss_pred CCCCceeecccCccCccceeE-EEECCEEEEEeecCCcceEEEeCCCCceEEec
Q 021759 186 INKDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEHGDCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 186 ~~~~~W~~~~~~~~~~~~~~~-~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~ 238 (308)
|++..|.+.+-+-...+-... +--.+++++..- +.+.+.+||+++.+.+.+.
T Consensus 261 Ps~~sW~eypLPgs~arpys~rVD~~grVW~sea-~agai~rfdpeta~ftv~p 313 (353)
T COG4257 261 PSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA-DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cccccceeeeCCCCCCCcceeeeccCCcEEeecc-ccCceeecCcccceEEEec
Confidence 999999987642222222222 334566776432 2668999999999999885
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.07 E-value=1.2 Score=41.01 Aligned_cols=147 Identities=9% Similarity=-0.002 Sum_probs=79.9
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 161 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 161 (308)
..++++|..+++-+.+...+..........-+.+|++....+ ...+++.+|..+++.+.+...... .......-
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~wSp 315 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIATKALTRITRHRAI-DTEPSWHP 315 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC-----CCeEEEEEECCCCCeEECccCCCC-ccceEECC
Confidence 468889988876655554432212222222244566554332 236799999999888776542211 11112223
Q ss_pred CC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCE-EEEEeecC-CcceEEEeCCCCceEEec
Q 021759 162 GS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEHG-DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 162 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-ly~~gg~~-~~~~~~yd~~~~~W~~~~ 238 (308)
++ +|++..... + ...++.+|+.++.++.+..... ........-+++ |++..... ...++.+|+++++.+.+.
T Consensus 316 DG~~I~f~s~~~--g--~~~Iy~~dl~~g~~~~Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 316 DGKSLIFTSERG--G--KPQIYRVNLASGKVSRLTFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred CCCEEEEEECCC--C--CceEEEEECCCCCEEEEecCCC-CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 44 455443222 1 2579999999888877642111 111223334555 44433221 347889999999887765
Q ss_pred C
Q 021759 239 G 239 (308)
Q Consensus 239 ~ 239 (308)
.
T Consensus 391 ~ 391 (448)
T PRK04792 391 S 391 (448)
T ss_pred C
Confidence 3
No 76
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=0.25 Score=43.94 Aligned_cols=144 Identities=14% Similarity=0.210 Sum_probs=83.0
Q ss_pred CCE-EEEEeccCCCCCCCCceeEEEeCCCCCccccCCCC--CCCc-ceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCC
Q 021759 64 QGK-LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPML--TPRS-FFASGNVNGKIMAVGGTGANINETMTAVECYDPE 139 (308)
Q Consensus 64 ~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~--~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~ 139 (308)
++. ..+++|+. .=++.||..+.+-.++.++- ..+. ..--+..++.++++-|.. .-+......
T Consensus 268 ~G~~~i~~s~rr-------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-------G~I~lLhak 333 (514)
T KOG2055|consen 268 NGHSVIFTSGRR-------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-------GHIHLLHAK 333 (514)
T ss_pred CCceEEEecccc-------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-------ceEEeehhh
Confidence 444 55555552 23688999999888887653 1222 223344566677777765 457777778
Q ss_pred CCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCc-cceeE--EEECCEEEEE
Q 021759 140 SDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEG-WTGIS--IVLEGKLFVI 216 (308)
Q Consensus 140 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~--~~~~~~ly~~ 216 (308)
|++|...-.++-.....+....+.+|++.||. ..+++||+.++.....- ..++ -++.+ ...++.++.+
T Consensus 334 T~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~~~~~rf--~D~G~v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 334 TKELITSFKIEGVVSDFTFSSDSKELLASGGT-------GEVYVWNLRQNSCLHRF--VDDGSVHGTSLCISLNGSYLAT 404 (514)
T ss_pred hhhhhheeeeccEEeeEEEecCCcEEEEEcCC-------ceEEEEecCCcceEEEE--eecCccceeeeeecCCCceEEe
Confidence 88775332233222333333334567777775 38999999988533221 1222 23333 2467776665
Q ss_pred eecCCcceEEEeCCC
Q 021759 217 SEHGDCPMKQYNPDD 231 (308)
Q Consensus 217 gg~~~~~~~~yd~~~ 231 (308)
|- +..-|-+||.++
T Consensus 405 GS-~~GiVNIYd~~s 418 (514)
T KOG2055|consen 405 GS-DSGIVNIYDGNS 418 (514)
T ss_pred cc-CcceEEEeccch
Confidence 54 455677888543
No 77
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.94 E-value=0.76 Score=37.88 Aligned_cols=143 Identities=13% Similarity=0.199 Sum_probs=68.5
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcce-EEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFF-ASGNV-NGKIMAVGGTGANINETMTAVECYDPESD 141 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 141 (308)
++.++++|+. ...+.+||..+++-.. ......... .+... +++.+++++.+ ..+.+||..++
T Consensus 20 ~~~~l~~~~~-------~g~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~~~~~~ 83 (289)
T cd00200 20 DGKLLATGSG-------DGTIKVWDLETGELLR--TLKGHTGPVRDVAASADGTYLASGSSD-------KTIRLWDLETG 83 (289)
T ss_pred CCCEEEEeec-------CcEEEEEEeeCCCcEE--EEecCCcceeEEEECCCCCEEEEEcCC-------CeEEEEEcCcc
Confidence 4566666654 2356777777654111 111111111 22222 44566666654 56888998775
Q ss_pred ceeeCcCCcCcccce-eEEEE-CCEEEEEecccCCCCcCCeEEEEeCCCCcee-ecccCccCccceeEEEE-CCEEEEEe
Q 021759 142 TWTTAAKLRMGLARY-DSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDTWN-LMSDGMKEGWTGISIVL-EGKLFVIS 217 (308)
Q Consensus 142 ~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~-~~~ly~~g 217 (308)
+.... +....... ..... ++++++.++.+ ..+.+||+.+..-. .+.. .. ......... ++++++.+
T Consensus 84 ~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 84 ECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGKCLTTLRG-HT-DWVNSVAFSPDGTFVASS 153 (289)
T ss_pred cceEE--EeccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcEEEEEecc-CC-CcEEEEEEcCcCCEEEEE
Confidence 32211 11111111 12222 34676666634 57899998754422 2221 11 111112222 34555554
Q ss_pred ecCCcceEEEeCCCCc
Q 021759 218 EHGDCPMKQYNPDDDT 233 (308)
Q Consensus 218 g~~~~~~~~yd~~~~~ 233 (308)
. ....+..||..+.+
T Consensus 154 ~-~~~~i~i~d~~~~~ 168 (289)
T cd00200 154 S-QDGTIKLWDLRTGK 168 (289)
T ss_pred c-CCCcEEEEEccccc
Confidence 4 35588999987543
No 78
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.93 E-value=1.3 Score=40.38 Aligned_cols=146 Identities=10% Similarity=0.004 Sum_probs=78.4
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 161 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 161 (308)
..++++|..+++-+.+...+..-.......-+.+|++....+ ...+++++|..+++.+.+...+..-... ...-
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~sp 296 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLASRQLSRVTNHPAIDTEP-FWGK 296 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC-----CCceEEEEECCCCCeEEcccCCCCcCCe-EECC
Confidence 468888988877666654332111111111234555443222 1267999999999887765432211111 1222
Q ss_pred CC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccce-eEEEECCE-EEEEeecC-CcceEEEeCCCCceEEe
Q 021759 162 GS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTG-ISIVLEGK-LFVISEHG-DCPMKQYNPDDDTWRYV 237 (308)
Q Consensus 162 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~-~~~~~~~~-ly~~gg~~-~~~~~~yd~~~~~W~~~ 237 (308)
++ +|+...... ....++.+|..++.++.+... ..... ....-+++ |+...... ...++.+|+.+++.+.+
T Consensus 297 Dg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 297 DGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCCEEEEEECCC----CCceEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence 44 565543222 124789999988887766421 11111 12233444 44443221 34689999999988877
Q ss_pred cC
Q 021759 238 GG 239 (308)
Q Consensus 238 ~~ 239 (308)
..
T Consensus 371 t~ 372 (430)
T PRK00178 371 TD 372 (430)
T ss_pred cC
Confidence 64
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.92 E-value=0.26 Score=44.01 Aligned_cols=145 Identities=10% Similarity=0.113 Sum_probs=76.6
Q ss_pred CCCEEEEEeccCCCCCCCCceeEEEeCCCCC-ccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC
Q 021759 63 RQGKLFVLGGMRSDTETPMQSTIMYRATTNQ-WQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD 141 (308)
Q Consensus 63 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 141 (308)
.|++++..|+.. ..+.+||.++.. -+.+.....|-+.--....++.+++.|+-+ ..+..+|..+.
T Consensus 78 ~DG~LlaaGD~s-------G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd-------~v~k~~d~s~a 143 (487)
T KOG0310|consen 78 SDGRLLAAGDES-------GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD-------KVVKYWDLSTA 143 (487)
T ss_pred cCCeEEEccCCc-------CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC-------ceEEEEEcCCc
Confidence 489999999773 357889955421 122222222322233345688999998865 34455555554
Q ss_pred cee-eCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCC-ceee-cccCccCccceeEEEECCEEEEEee
Q 021759 142 TWT-TAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD-TWNL-MSDGMKEGWTGISIVLEGKLFVISE 218 (308)
Q Consensus 142 ~W~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~-~~~~~~~~~~~~~~~~~~~ly~~gg 218 (308)
.-+ .+..-.-..........++.|++-||++ ..+-.||+.+. .|.. +. ...+-....+.-.+.+.+..|
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD------g~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYD------GKVRLWDTRSLTSRVVELN--HGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCC------ceEEEEEeccCCceeEEec--CCCceeeEEEcCCCCEEEEcC
Confidence 421 1111111111222233467899999998 47889999887 4432 22 122222222233434444433
Q ss_pred cCCcceEEEeCCC
Q 021759 219 HGDCPMKQYNPDD 231 (308)
Q Consensus 219 ~~~~~~~~yd~~~ 231 (308)
++.+.++|+.+
T Consensus 216 --Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 216 --GNSVKVWDLTT 226 (487)
T ss_pred --CCeEEEEEecC
Confidence 33666777653
No 80
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.89 E-value=0.6 Score=41.21 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=86.9
Q ss_pred eEEEeCCCCCccccCCCCCCCcceEEEE--eCCEEEEEcCCCCCCCCCCCeEEEEeC--CCCceeeCcCCcCcccceeEE
Q 021759 84 TIMYRATTNQWQLASPMLTPRSFFASGN--VNGKIMAVGGTGANINETMTAVECYDP--ESDTWTTAAKLRMGLARYDSA 159 (308)
Q Consensus 84 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~r~~~~~~ 159 (308)
++.||..++++..+......-.-.-++. -++.||+..... .....+..|+. .+.+.+.+...+......+..
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS----STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred EEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc----cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 4567778999887765322211112222 367888885542 12344555544 446777776655433333333
Q ss_pred EE---CCEEEEEecccCCCCcCCeEEEEeCCCC-ceeeccc--------C---ccCccceeEEEE--CCE-EEEEeecCC
Q 021759 160 VM---GSKMYVTEGWTWPFMFSPRGGVYDINKD-TWNLMSD--------G---MKEGWTGISIVL--EGK-LFVISEHGD 221 (308)
Q Consensus 160 ~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~~~--------~---~~~~~~~~~~~~--~~~-ly~~gg~~~ 221 (308)
.+ +..+|+..-.. ..+.+|++..+ +-..... + .....+.+.+.. +++ +|+.. ...
T Consensus 93 ~~~~~g~~l~vany~~------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-lG~ 165 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGG------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-LGA 165 (345)
T ss_dssp EECTTSSEEEEEETTT------TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-TTT
T ss_pred EEecCCCEEEEEEccC------CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-cCC
Confidence 33 44566653322 57888887764 2222210 1 112233444433 444 66554 336
Q ss_pred cceEEEeCCCCc--eEEecCCCCCCccccCCeEEEEeC-CEEEEEcCCc
Q 021759 222 CPMKQYNPDDDT--WRYVGGDKFPCEVMHRPFAVNGVE-GKIYVVSSGL 267 (308)
Q Consensus 222 ~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~gG~~ 267 (308)
+.|+.|+.+... .+......++... .-.|.+..-+ ..+|++....
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~e~s 213 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVNELS 213 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEETTT
T ss_pred CEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEEEecCCC
Confidence 688888887665 6654433333111 1123334434 4688887643
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.81 E-value=0.76 Score=41.16 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=75.9
Q ss_pred EEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC-ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeC
Q 021759 108 ASGNVNGKIMAVGGTGANINETMTAVECYDPESD-TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 186 (308)
Q Consensus 108 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 186 (308)
++...+++|++-||++ ..+-.||..+. +|..--+--.|.....+..-+..|...|| +.+-++|+
T Consensus 160 ~~~~~~~hivvtGsYD-------g~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG--------n~vkVWDl 224 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYD-------GKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG--------NSVKVWDL 224 (487)
T ss_pred ccccCCCeEEEecCCC-------ceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC--------CeEEEEEe
Confidence 3444578899999998 56888998887 44332121222222111122355666677 67889998
Q ss_pred CCCceeecccCcc-CccceeEE--EECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEE
Q 021759 187 NKDTWNLMSDGMK-EGWTGISI--VLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVV 263 (308)
Q Consensus 187 ~~~~W~~~~~~~~-~~~~~~~~--~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 263 (308)
.++.= .+.. +. ..-.-.+. .-++.-++.||. ...+.+|| +..|..+-.+..|.+ .-...+..|++-.++
T Consensus 225 ~~G~q-ll~~-~~~H~KtVTcL~l~s~~~rLlS~sL-D~~VKVfd--~t~~Kvv~s~~~~~p---vLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 225 TTGGQ-LLTS-MFNHNKTVTCLRLASDSTRLLSGSL-DRHVKVFD--TTNYKVVHSWKYPGP---VLSIAVSPDDQTVVI 296 (487)
T ss_pred cCCce-ehhh-hhcccceEEEEEeecCCceEeeccc-ccceEEEE--ccceEEEEeeecccc---eeeEEecCCCceEEE
Confidence 75431 1211 22 11111221 224454555655 55799999 456767766666621 112224457788888
Q ss_pred cCCce
Q 021759 264 SSGLN 268 (308)
Q Consensus 264 gG~~~ 268 (308)
|..+.
T Consensus 297 GmsnG 301 (487)
T KOG0310|consen 297 GMSNG 301 (487)
T ss_pred ecccc
Confidence 87544
No 82
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.70 E-value=0.44 Score=41.52 Aligned_cols=150 Identities=15% Similarity=0.238 Sum_probs=87.5
Q ss_pred CEEEEEeccCCCC--CCCC-ceeEEEeCCCC-----CccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEE
Q 021759 65 GKLFVLGGMRSDT--ETPM-QSTIMYRATTN-----QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECY 136 (308)
Q Consensus 65 ~~iyv~GG~~~~~--~~~~-~~~~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y 136 (308)
...+++|-....+ .... ..++.|+.... +++.+.....+-.-.+++.+++++.+.-|. .+.+|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~---------~l~v~ 112 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGN---------KLYVY 112 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETT---------EEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecC---------EEEEE
Confidence 4566666432221 1123 66888988885 556665555555567888889997777664 38888
Q ss_pred eCCCCc-eeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEE-CCEEE
Q 021759 137 DPESDT-WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL-EGKLF 214 (308)
Q Consensus 137 d~~t~~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~ly 214 (308)
+...++ +...+.+..+-.-....++++.|++-.-.. .-.+..|+.+..+-..+.......+..++..+ ++..+
T Consensus 113 ~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~-----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 113 DLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK-----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp EEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS-----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEE
T ss_pred EccCcccchhhheecceEEEEEEeccccEEEEEEccc-----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEE
Confidence 888887 887776666656666777889887753332 13456678766667766653334444444455 66544
Q ss_pred EEeecCCcc--eEEEeC
Q 021759 215 VISEHGDCP--MKQYNP 229 (308)
Q Consensus 215 ~~gg~~~~~--~~~yd~ 229 (308)
+++-. ... +..|++
T Consensus 188 i~~D~-~gnl~~l~~~~ 203 (321)
T PF03178_consen 188 IVGDK-DGNLFVLRYNP 203 (321)
T ss_dssp EEEET-TSEEEEEEE-S
T ss_pred EEEcC-CCeEEEEEECC
Confidence 44433 333 445554
No 83
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.59 E-value=1.2 Score=37.64 Aligned_cols=146 Identities=12% Similarity=-0.031 Sum_probs=73.1
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccc-cCCCCCCCcceEEEEe--CCEEEEEcCCCCCCCCCCCeEEEEeCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQL-ASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPES 140 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t 140 (308)
+..+|+.++. ...+.+||..+++... ++....+ ..++.. ++.+|+.++.+ ..+.+||+.+
T Consensus 42 g~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~-------~~l~~~d~~~ 104 (300)
T TIGR03866 42 GKLLYVCASD-------SDTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANEDD-------NLVTVIDIET 104 (300)
T ss_pred CCEEEEEECC-------CCeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCCC-------CeEEEEECCC
Confidence 3457777643 2357889998876533 2221111 122222 34566665443 4688999987
Q ss_pred CceeeCcCCcCcccceeEE-EECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeec
Q 021759 141 DTWTTAAKLRMGLARYDSA-VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEH 219 (308)
Q Consensus 141 ~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 219 (308)
.+-. ..++.......++ .-++++++++.... ..+..||..+..-..... ............+++.+++++.
T Consensus 105 ~~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 105 RKVL--AEIPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred CeEE--eEeeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC
Confidence 6422 1122111112222 23677766655321 346677877654322111 1111122223446665545543
Q ss_pred CCcceEEEeCCCCce
Q 021759 220 GDCPMKQYNPDDDTW 234 (308)
Q Consensus 220 ~~~~~~~yd~~~~~W 234 (308)
....+..||+++.+.
T Consensus 177 ~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 177 IGGTVSVIDVATRKV 191 (300)
T ss_pred CCCEEEEEEcCccee
Confidence 355799999987654
No 84
>smart00284 OLF Olfactomedin-like domains.
Probab=95.56 E-value=1.2 Score=37.26 Aligned_cols=185 Identities=13% Similarity=0.084 Sum_probs=102.3
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeC----CCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRA----TTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPE 139 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~ 139 (308)
++++|++.+.. ...+.++.|.- ..+++.+.-.+|.+-.+...++.+|.+|.--.. .+.+.+||..
T Consensus 34 ~~~~wv~~~~~----~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~-------s~~iiKydL~ 102 (255)
T smart00284 34 KSLYWYMPLNT----RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN-------SHDICRFDLT 102 (255)
T ss_pred CceEEEEcccc----CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC-------CccEEEEECC
Confidence 36788875541 11234555532 233343333466666778888999999985332 4779999999
Q ss_pred CCceeeCcCCcCc----cc-----c---eeEEEECCEEEEEecccCCCCcCCeEEEEeCCCC----ceeecccCccCccc
Q 021759 140 SDTWTTAAKLRMG----LA-----R---YDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD----TWNLMSDGMKEGWT 203 (308)
Q Consensus 140 t~~W~~~~~~~~~----r~-----~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~~~~ 203 (308)
+++-.....+|.+ +. + .-.++-++-++|+=......+ .-.+-..||.+- +|.. ..+.+..
T Consensus 103 t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-~ivvSkLnp~tL~ve~tW~T---~~~k~sa 178 (255)
T smart00284 103 TETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-KIVISKLNPATLTIENTWIT---TYNKRSA 178 (255)
T ss_pred CCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC-CEEEEeeCcccceEEEEEEc---CCCcccc
Confidence 9865433334332 11 1 123444566766633221111 123456777765 4543 2344444
Q ss_pred eeEEEECCEEEEEeecC---CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEe---CCEEEEEcCC
Q 021759 204 GISIVLEGKLFVISEHG---DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGV---EGKIYVVSSG 266 (308)
Q Consensus 204 ~~~~~~~~~ly~~gg~~---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~v~gG~ 266 (308)
+-++.+=|.||++.... ..-.++||+.+++=..+ .++++. .....+++.+ |.+||+.--+
T Consensus 179 ~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~-~i~f~n--~y~~~s~l~YNP~d~~LY~wdng 244 (255)
T smart00284 179 SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHL-DIPFEN--MYEYISMLDYNPNDRKLYAWNNG 244 (255)
T ss_pred cccEEEeeEEEEEccCCCCCcEEEEEEECCCCcccee-eeeecc--ccccceeceeCCCCCeEEEEeCC
Confidence 45566678999997422 23478999998763332 234541 1333334433 6788887643
No 85
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.48 E-value=1.2 Score=36.74 Aligned_cols=144 Identities=8% Similarity=0.081 Sum_probs=66.0
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCC-cceEEEEeC-CEEEEEcCCCCCCCCCCCeEEEEeCCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR-SFFASGNVN-GKIMAVGGTGANINETMTAVECYDPESD 141 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 141 (308)
++.+++.++. ...+..||..+.+-.. .+.... .-.++.... +++++.|..+ ..+.+||..+.
T Consensus 104 ~~~~~~~~~~-------~~~i~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~ 167 (289)
T cd00200 104 DGRILSSSSR-------DKTIKVWDVETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQD-------GTIKLWDLRTG 167 (289)
T ss_pred CCCEEEEecC-------CCeEEEEECCCcEEEE--EeccCCCcEEEEEEcCcCCEEEEEcCC-------CcEEEEEcccc
Confidence 3456666553 2357788887543211 111111 112222222 4555554433 45888998754
Q ss_pred ceeeCcCCcCcc-cceeEEE-ECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEE-CCEEEEEee
Q 021759 142 TWTTAAKLRMGL-ARYDSAV-MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL-EGKLFVISE 218 (308)
Q Consensus 142 ~W~~~~~~~~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~ly~~gg 218 (308)
+-.. .+.... .-..+.. -+++.+++++.+ ..+.+||..+......-..... .....+.. ++.+++.++
T Consensus 168 ~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 168 KCVA--TLTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLSTGKCLGTLRGHEN-GVNSVAFSPDGYLLASGS 238 (289)
T ss_pred ccce--eEecCccccceEEECCCcCEEEEecCC------CcEEEEECCCCceecchhhcCC-ceEEEEEcCCCcEEEEEc
Confidence 3211 111111 1111222 244455555543 5789999876443222110111 11112222 355655554
Q ss_pred cCCcceEEEeCCCCc
Q 021759 219 HGDCPMKQYNPDDDT 233 (308)
Q Consensus 219 ~~~~~~~~yd~~~~~ 233 (308)
....+..||..+.+
T Consensus 239 -~~~~i~i~~~~~~~ 252 (289)
T cd00200 239 -EDGTIRVWDLRTGE 252 (289)
T ss_pred -CCCcEEEEEcCCce
Confidence 25589999987643
No 86
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.36 E-value=1.1 Score=35.86 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=76.7
Q ss_pred ceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCc--cccC----CCCCCCcceEEEEeC-CEEEEEcCCCCCCCC
Q 021759 56 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQW--QLAS----PMLTPRSFFASGNVN-GKIMAVGGTGANINE 128 (308)
Q Consensus 56 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~----~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~ 128 (308)
+-+++.. .+++|++-|. .+|+++...... +.+. .+|. ....+....+ +++|+|-|..
T Consensus 9 iDA~~~~-~g~~y~FkG~---------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg~~----- 72 (194)
T cd00094 9 FDAVTTL-RGELYFFKGR---------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKGDK----- 72 (194)
T ss_pred CCeEEEe-CCEEEEEeCC---------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECCCE-----
Confidence 3344443 5899999654 467777652111 1111 1221 2233333333 8999997753
Q ss_pred CCCeEEEEeCCCCce---eeCcCCcCc---ccceeEEEE--CCEEEEEecccCCCCcCCeEEEEeCCCCceeec-cc---
Q 021759 129 TMTAVECYDPESDTW---TTAAKLRMG---LARYDSAVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLM-SD--- 196 (308)
Q Consensus 129 ~~~~~~~yd~~t~~W---~~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~--- 196 (308)
.++||..+..+ +.+.....+ ..--++... ++++|++-| +..++||...++...- +.
T Consensus 73 ----yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i~ 140 (194)
T cd00094 73 ----YWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLIE 140 (194)
T ss_pred ----EEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcchh
Confidence 77777654221 111111111 111122233 689999988 5788998765543211 00
Q ss_pred ----CccCccceeEEEE-CCEEEEEeecCCcceEEEeCCCCc
Q 021759 197 ----GMKEGWTGISIVL-EGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 197 ----~~~~~~~~~~~~~-~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
..+... .++... ++++|++-|. ..++||..+++
T Consensus 141 ~~w~g~p~~i-daa~~~~~~~~yfF~g~---~y~~~d~~~~~ 178 (194)
T cd00094 141 TDFPGVPDKV-DAAFRWLDGYYYFFKGD---QYWRFDPRSKE 178 (194)
T ss_pred hcCCCcCCCc-ceeEEeCCCcEEEEECC---EEEEEeCccce
Confidence 011111 122223 4889999865 89999998776
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.22 E-value=1.3 Score=39.36 Aligned_cols=120 Identities=15% Similarity=0.172 Sum_probs=67.8
Q ss_pred ceEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE--CCEEEEEecccCCCCcCCeEE
Q 021759 106 FFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM--GSKMYVTEGWTWPFMFSPRGG 182 (308)
Q Consensus 106 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 182 (308)
.++++.+ +|.|+..|-.+ ..+-+||..+.+ .++..|..-.--.+..+ +|+-.+.+--+ ..+.
T Consensus 350 ~ts~~fHpDgLifgtgt~d-------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add------~~V~ 414 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD------GSVK 414 (506)
T ss_pred eEEeeEcCCceEEeccCCC-------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC------CeEE
Confidence 3344444 56666655544 557788888775 55555542222223333 34444443332 3589
Q ss_pred EEeCCCCc-eeecccCccCccceeEEEE--CCEEEEEeecCCcceEEEeCCCCceEEecCCCCC
Q 021759 183 VYDINKDT-WNLMSDGMKEGWTGISIVL--EGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFP 243 (308)
Q Consensus 183 ~yd~~~~~-W~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~ 243 (308)
+||++... ...+. .+......+..+ -|+.++++|. .-.++.|+..+.+|+.+.....-
T Consensus 415 lwDLRKl~n~kt~~--l~~~~~v~s~~fD~SGt~L~~~g~-~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 415 LWDLRKLKNFKTIQ--LDEKKEVNSLSFDQSGTYLGIAGS-DLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred EEEehhhcccceee--ccccccceeEEEcCCCCeEEeecc-eeEEEEEecccccceeeehhhhc
Confidence 99987654 22222 233322223333 4677777765 55788888999999999864443
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.10 E-value=2.5 Score=43.25 Aligned_cols=155 Identities=10% Similarity=0.088 Sum_probs=85.2
Q ss_pred EEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCC----------CC---CCCcceEEEEe--CCEEEEEcCC
Q 021759 58 CTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASP----------ML---TPRSFFASGNV--NGKIMAVGGT 122 (308)
Q Consensus 58 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~----------~~---~~r~~~~~~~~--~~~iyv~GG~ 122 (308)
.++...++.|||.... ...+++||+.++....+.. .. .-..-..++.. ++.||+....
T Consensus 688 Va~dp~~g~LyVad~~-------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~ 760 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAG-------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE 760 (1057)
T ss_pred EEEecCCCeEEEEECC-------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC
Confidence 3333336778887422 3457888887664432210 00 00111223332 3469988655
Q ss_pred CCCCCCCCCeEEEEeCCCCceeeCc---C-CcC--------------cc-cce-eEE-EECCEEEEEecccCCCCcCCeE
Q 021759 123 GANINETMTAVECYDPESDTWTTAA---K-LRM--------------GL-ARY-DSA-VMGSKMYVTEGWTWPFMFSPRG 181 (308)
Q Consensus 123 ~~~~~~~~~~~~~yd~~t~~W~~~~---~-~~~--------------~r-~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~ 181 (308)
+ +.+.+||+.++..+.+. + .+. .. ... +++ .-++.|||....+ ..+
T Consensus 761 n-------~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------~rI 827 (1057)
T PLN02919 761 S-------SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------HKI 827 (1057)
T ss_pred C-------CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------CEE
Confidence 3 67999998876532211 0 000 00 011 222 2367899986654 689
Q ss_pred EEEeCCCCceeecccCc----------c---CccceeEEEECCEEEEEeecCCcceEEEeCCCCc
Q 021759 182 GVYDINKDTWNLMSDGM----------K---EGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 182 ~~yd~~~~~W~~~~~~~----------~---~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
.+||+.++....+...- . ....+.++.-+++|||.... .+.|.++|+++.+
T Consensus 828 rviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~-Nn~Irvid~~~~~ 891 (1057)
T PLN02919 828 KKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN-NSLIRYLDLNKGE 891 (1057)
T ss_pred EEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC-CCEEEEEECCCCc
Confidence 99999888766543210 0 01122234447889998754 6689999998875
No 89
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.95 E-value=1.9 Score=36.18 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=68.1
Q ss_pred eCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCce
Q 021759 112 VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTW 191 (308)
Q Consensus 112 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 191 (308)
.++.+|.--|.- ..+.+..||+.|++-....++|..-.+-+.+.++++||.+-=.+ ...++||+.+-
T Consensus 54 ~~g~LyESTG~y-----G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~------~~~f~yd~~tl-- 120 (264)
T PF05096_consen 54 DDGTLYESTGLY-----GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE------GTGFVYDPNTL-- 120 (264)
T ss_dssp ETTEEEEEECST-----TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS------SEEEEEETTTT--
T ss_pred CCCEEEEeCCCC-----CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC------CeEEEEccccc--
Confidence 478888876653 24788999999998766667777777778899999999985433 68999999763
Q ss_pred eeccc-Cc-cCccceeEEEECCEEEEEeecCCcceEEEeCCCCc
Q 021759 192 NLMSD-GM-KEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 192 ~~~~~-~~-~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
+.+.. .. ..+| +. +.-+..|++-.| ...++..||++-+
T Consensus 121 ~~~~~~~y~~EGW-GL-t~dg~~Li~SDG--S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 121 KKIGTFPYPGEGW-GL-TSDGKRLIMSDG--SSRLYFLDPETFK 160 (264)
T ss_dssp EEEEEEE-SSS---EE-EECSSCEEEE-S--SSEEEEE-TTT-S
T ss_pred eEEEEEecCCcce-EE-EcCCCEEEEECC--ccceEEECCcccc
Confidence 33332 11 2222 22 344556777777 4599999998643
No 90
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.88 E-value=1.1 Score=42.00 Aligned_cols=115 Identities=19% Similarity=0.304 Sum_probs=68.5
Q ss_pred eEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC--ceeeCcCCcCc--------ccceeEEEECCEEEEEecccCCCC
Q 021759 107 FASGNVNGKIMAVGGTGANINETMTAVECYDPESD--TWTTAAKLRMG--------LARYDSAVMGSKMYVTEGWTWPFM 176 (308)
Q Consensus 107 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~ 176 (308)
.+-++.++.||+.... ..++.+|..|. .|+.-...+.. ....+.++.+++||+... +
T Consensus 63 stPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d---- 129 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D---- 129 (527)
T ss_pred cCCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C----
Confidence 3445669999986543 35889998876 58754332211 112234567889887432 2
Q ss_pred cCCeEEEEeCCCCc--eeecccCccCc--cceeEEEECCEEEEEeecC----CcceEEEeCCCCc--eEE
Q 021759 177 FSPRGGVYDINKDT--WNLMSDGMKEG--WTGISIVLEGKLFVISEHG----DCPMKQYNPDDDT--WRY 236 (308)
Q Consensus 177 ~~~~~~~yd~~~~~--W~~~~~~~~~~--~~~~~~~~~~~ly~~gg~~----~~~~~~yd~~~~~--W~~ 236 (308)
..+.++|.++++ |+.-....... ..+.-++.+++||+-.... ...+..||.++++ |+.
T Consensus 130 --g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 130 --ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred --CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 479999998875 86533212211 1122256788887743211 3478999998875 763
No 91
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=94.85 E-value=1.9 Score=35.76 Aligned_cols=156 Identities=12% Similarity=0.128 Sum_probs=76.3
Q ss_pred eEEEEcCCCEEEEEeccCCCCCCCCceeEEEe---CCCCCccc--cCCCCC-------CCcceEEEEeCCEEEEEcCCCC
Q 021759 57 ACTSLPRQGKLFVLGGMRSDTETPMQSTIMYR---ATTNQWQL--ASPMLT-------PRSFFASGNVNGKIMAVGGTGA 124 (308)
Q Consensus 57 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd---~~~~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~~ 124 (308)
.+.++ .++||.+=-...-....+...+.|| ...+.|+. ++..+. .-.-|+.+.+++.-|.+|=.+
T Consensus 79 SMGv~--~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHn- 155 (367)
T PF12217_consen 79 SMGVV--GNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHN- 155 (367)
T ss_dssp -EEEE--TTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-
T ss_pred eeeee--cceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEecc-
Confidence 34445 8899988533212223345556666 34567853 444333 335788999988888887654
Q ss_pred CCCCCCCeEEEEeCCCCce--------eeCc-CCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecc
Q 021759 125 NINETMTAVECYDPESDTW--------TTAA-KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMS 195 (308)
Q Consensus 125 ~~~~~~~~~~~yd~~t~~W--------~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~ 195 (308)
++-..+.+-.+-. ++.| +.++ .........++-.+++++|+.-.-.........+.+-+.....|+.+.
T Consensus 156 -GD~sPRe~G~~yf-s~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr 233 (367)
T PF12217_consen 156 -GDVSPRELGFLYF-SDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR 233 (367)
T ss_dssp --SSSS-EEEEEEE-TTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE
T ss_pred -CCCCcceeeEEEe-cccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc
Confidence 3333444432221 1222 1222 111122334444579999998533222334457777777777899887
Q ss_pred cCccCccce---eEEEECCEEEEEeec
Q 021759 196 DGMKEGWTG---ISIVLEGKLFVISEH 219 (308)
Q Consensus 196 ~~~~~~~~~---~~~~~~~~ly~~gg~ 219 (308)
-+ ..-+. ..+..++.||+||-.
T Consensus 234 fp--~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 234 FP--NNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp -T--T---SS---EEEETTEEEEEEE-
T ss_pred cc--ccccccCCCceeeCCEEEEEecc
Confidence 42 22222 236789999999864
No 92
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.80 E-value=3.1 Score=37.94 Aligned_cols=146 Identities=10% Similarity=-0.009 Sum_probs=77.4
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 161 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 161 (308)
..++++|..+++-+.+...+..........-+.+|++....+ ...+++++|+.+++.+.+...... .......-
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~~g~~~~lt~~~~~-~~~~~~sp 301 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLGSRQLTRLTNHFGI-DTEPTWAP 301 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC-----CCceEEEEECCCCCeEECccCCCC-ccceEECC
Confidence 468888988877666655432211111112244565543332 135799999998876665432211 11112223
Q ss_pred CCE-EEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCE-EEEEeecC-CcceEEEeCCCCceEEec
Q 021759 162 GSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEHG-DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 162 ~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-ly~~gg~~-~~~~~~yd~~~~~W~~~~ 238 (308)
+++ |++..... + ...++.+|..++..+.+.. ...........-+++ |++..+.. ...++++|+.+++.+.+.
T Consensus 302 DG~~l~f~sd~~--g--~~~iy~~dl~~g~~~~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 302 DGKSIYFTSDRG--G--RPQIYRVAASGGSAERLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred CCCEEEEEECCC--C--CceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC
Confidence 454 54443221 1 2478999988887766642 111111222333554 44443322 347999999998887665
No 93
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=94.76 E-value=2 Score=35.42 Aligned_cols=148 Identities=13% Similarity=0.123 Sum_probs=84.4
Q ss_pred CccccCCCC-----CCCcceEEEE-eCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE--CCE
Q 021759 93 QWQLASPML-----TPRSFFASGN-VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM--GSK 164 (308)
Q Consensus 93 ~W~~~~~~~-----~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~ 164 (308)
-|+..++|. .|-.+..... -.+.|+..||- ..+++.|.++++.++.-. ...-+-|+++.- .+.
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD--------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD--------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC--------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcc
Confidence 477666653 2333333322 46888888875 458899999998765421 111123333321 334
Q ss_pred EEEEecccCCCCcCCeEEEEeCCCCceeecc-c-----CccCccce--eEEEECCEEEEEeecCCcceEEEeCCCCceEE
Q 021759 165 MYVTEGWTWPFMFSPRGGVYDINKDTWNLMS-D-----GMKEGWTG--ISIVLEGKLFVISEHGDCPMKQYNPDDDTWRY 236 (308)
Q Consensus 165 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~-----~~~~~~~~--~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~ 236 (308)
|+ -|+.+ .++-++|.+|.+-..+- + .+.+.+.. .+...+..-.++|| ...+-.|++.+.+-+.
T Consensus 171 il-sG~ED------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg--Gp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 171 IL-SGAED------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG--GPKLSLWHLRSSESTC 241 (325)
T ss_pred ee-ecCCC------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC--CCceeEEeccCCCceE
Confidence 43 35554 47889999988765442 2 11211222 33445555566666 4478888888877666
Q ss_pred ecCCCCCCccccCCeEEEEeCCEEEEEc
Q 021759 237 VGGDKFPCEVMHRPFAVNGVEGKIYVVS 264 (308)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~l~v~g 264 (308)
+- |+| ...+-+..+++.+++.|
T Consensus 242 vf--pip----a~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 242 VF--PIP----ARVHLVDFVDDCVLIGG 263 (325)
T ss_pred EE--ecc----cceeEeeeecceEEEec
Confidence 64 555 44455566667666666
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.53 E-value=2.6 Score=35.77 Aligned_cols=131 Identities=13% Similarity=0.207 Sum_probs=70.7
Q ss_pred eeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEEC
Q 021759 83 STIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMG 162 (308)
Q Consensus 83 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 162 (308)
.+..||...+.-... +.....-..++..+..=.+.||.+ ..+-+||..+.+=..+..-..+.....- ...
T Consensus 36 slrlYdv~~~~l~~~--~~~~~plL~c~F~d~~~~~~G~~d-------g~vr~~Dln~~~~~~igth~~~i~ci~~-~~~ 105 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK--FKHGAPLLDCAFADESTIVTGGLD-------GQVRRYDLNTGNEDQIGTHDEGIRCIEY-SYE 105 (323)
T ss_pred cEEEEeccchhhhhh--eecCCceeeeeccCCceEEEeccC-------ceEEEEEecCCcceeeccCCCceEEEEe-ecc
Confidence 467788877622111 111111223334454455677776 6688999988765544432222211111 123
Q ss_pred CEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCc
Q 021759 163 SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 163 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
...+|.||++ ..+..+|+.... ........-.-.+....+..+++|.. ...+.+||+.+..
T Consensus 106 ~~~vIsgsWD------~~ik~wD~R~~~---~~~~~d~~kkVy~~~v~g~~LvVg~~-~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 106 VGCVISGSWD------KTIKFWDPRNKV---VVGTFDQGKKVYCMDVSGNRLVVGTS-DRKVLIYDLRNLD 166 (323)
T ss_pred CCeEEEcccC------ccEEEEeccccc---cccccccCceEEEEeccCCEEEEeec-CceEEEEEccccc
Confidence 4456779988 689999998621 11112222222233445555666665 6689999987654
No 95
>PRK13684 Ycf48-like protein; Provisional
Probab=94.52 E-value=3.1 Score=36.58 Aligned_cols=174 Identities=10% Similarity=0.152 Sum_probs=84.1
Q ss_pred CCCccccCC-CCCCCc-ceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCC-cCcccceeEEEE-CCEEE
Q 021759 91 TNQWQLASP-MLTPRS-FFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL-RMGLARYDSAVM-GSKMY 166 (308)
Q Consensus 91 ~~~W~~~~~-~~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~r~~~~~~~~-~~~iy 166 (308)
-.+|++... ++.... ...+...++..|+.|... .+++=+-.-.+|+++... ..+......... ++.+|
T Consensus 75 G~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~g--------~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~ 146 (334)
T PRK13684 75 GETWEERSLDLPEENFRLISISFKGDEGWIVGQPS--------LLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAE 146 (334)
T ss_pred CCCceECccCCcccccceeeeEEcCCcEEEeCCCc--------eEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcce
Confidence 348987653 332222 223333355677765432 233322223489987522 122222223333 45566
Q ss_pred EEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEE-eCCCCceEEecCCCCCCc
Q 021759 167 VTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQY-NPDDDTWRYVGGDKFPCE 245 (308)
Q Consensus 167 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~y-d~~~~~W~~~~~~~~~~~ 245 (308)
++|.. ..+++-+-.-.+|+.+..............-++.++++|.. ..++.- |....+|+.+.. +..
T Consensus 147 ~~g~~-------G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~--G~i~~s~~~gg~tW~~~~~-~~~-- 214 (334)
T PRK13684 147 MATNV-------GAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR--GNFYSTWEPGQTAWTPHQR-NSS-- 214 (334)
T ss_pred eeecc-------ceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCC--ceEEEEcCCCCCeEEEeeC-CCc--
Confidence 66543 24565555567899887533222222222234555555543 234433 445568998853 222
Q ss_pred cccCCeEEE-EeCCEEEEEcCCceEeEEEeeeecCCCceeeeEEecCC
Q 021759 246 VMHRPFAVN-GVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTAP 292 (308)
Q Consensus 246 ~~~~~~~~~-~~~~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~~~~~p 292 (308)
..-.+++ ..+++++++|........ -+.....|+.+..|
T Consensus 215 --~~l~~i~~~~~g~~~~vg~~G~~~~~------s~d~G~sW~~~~~~ 254 (334)
T PRK13684 215 --RRLQSMGFQPDGNLWMLARGGQIRFN------DPDDLESWSKPIIP 254 (334)
T ss_pred --ccceeeeEcCCCCEEEEecCCEEEEc------cCCCCCccccccCC
Confidence 3334443 357888888764321110 12333577765554
No 96
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.33 E-value=3.5 Score=36.39 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=82.7
Q ss_pred eEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCC--ccccCCC--C---CCCcceEEEE-eCCEEEEEcCCCCCCCC
Q 021759 57 ACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQ--WQLASPM--L---TPRSFFASGN-VNGKIMAVGGTGANINE 128 (308)
Q Consensus 57 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~--~---~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 128 (308)
.+.....++.+|+.- .-.+.+++|+...++ ..+.... + .|| |.+.. -+..+||+.-.+
T Consensus 148 ~v~~~pdg~~v~v~d-------lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e~s----- 213 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPD-------LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNELS----- 213 (345)
T ss_dssp EEEE-TTSSEEEEEE-------TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEETTT-----
T ss_pred eEEECCCCCEEEEEe-------cCCCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecCCC-----
Confidence 333334345777763 224578888876655 5443222 2 233 22222 246899987654
Q ss_pred CCCeEEEEeCC--CCceeeC---cCCcCccc---cee-EEEE--CCEEEEEecccCCCCcCCeEEEEeC--CCCceeecc
Q 021759 129 TMTAVECYDPE--SDTWTTA---AKLRMGLA---RYD-SAVM--GSKMYVTEGWTWPFMFSPRGGVYDI--NKDTWNLMS 195 (308)
Q Consensus 129 ~~~~~~~yd~~--t~~W~~~---~~~~~~r~---~~~-~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~--~~~~W~~~~ 195 (308)
+.+.+|+.. +.+++.+ +.+|.... ..+ .... +..+|+.... .+.|.+|+. .+++.+.+.
T Consensus 214 --~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 214 --NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp --TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEE
T ss_pred --CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEE
Confidence 556666655 5555543 44443221 222 2222 3468886543 267888886 445555544
Q ss_pred cCccCcc--ceeEEEECCEEEEEeecCCcceEEE--eCCCCceEEecC
Q 021759 196 DGMKEGW--TGISIVLEGKLFVISEHGDCPMKQY--NPDDDTWRYVGG 239 (308)
Q Consensus 196 ~~~~~~~--~~~~~~~~~~ly~~gg~~~~~~~~y--d~~~~~W~~~~~ 239 (308)
...-.+. ....+.-+++.+++.....+.+.+| |.+++.++.+..
T Consensus 286 ~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 286 TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 3111111 1222233666555566556667666 567888887763
No 97
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.31 E-value=2 Score=35.18 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=86.2
Q ss_pred eeEEEeCCCCCccccCCCCCCCcceEEEEeC--CEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 83 STIMYRATTNQWQLASPMLTPRSFFASGNVN--GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 83 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
.++.+|.++++-.+- ...+-..-.++.++ ..+.+-|+.+ .++..+|.+++.-+.+.-+...+.+-....
T Consensus 82 ~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD-------~s~r~wDCRS~s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD-------SSVRLWDCRSRSFEPIQILDEAKDGVSSID 152 (307)
T ss_pred eEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc-------ceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence 578899998853211 11111223344443 4677777776 778999999998888877788888888888
Q ss_pred ECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCc
Q 021759 161 MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 161 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
+.+..++.|..+ .++-.||...++-.. .-+..+-.+.+..-++...++|-. ...+...|.++++
T Consensus 153 v~~heIvaGS~D------GtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l-~stlrLlDk~tGk 216 (307)
T KOG0316|consen 153 VAEHEIVAGSVD------GTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSL-DSTLRLLDKETGK 216 (307)
T ss_pred ecccEEEeeccC------CcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeec-cceeeecccchhH
Confidence 888888887776 478889987765321 113333333344456666666654 3466777777765
No 98
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.31 E-value=4.1 Score=37.17 Aligned_cols=167 Identities=10% Similarity=-0.017 Sum_probs=83.9
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 161 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 161 (308)
..++++|..+++-+.+...+..-.......-+.+|++....+ ...+++++|..+++.+.+........ .....-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~tg~~~~lt~~~~~~~-~~~wSP 296 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLASGQIRQVTDGRSNNT-EPTWFP 296 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECCCCCEEEccCCCCCcC-ceEECC
Confidence 457778887776555554332211111111234565543322 12469999999888776644322111 111222
Q ss_pred CCE-EEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecC--CcceEEEeCCCCceEEec
Q 021759 162 GSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHG--DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 162 ~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~--~~~~~~yd~~~~~W~~~~ 238 (308)
+++ |+...... + ...++.+|+.+..-+.+.. ...........-+++.+++.... ...++.+|+++++++.+.
T Consensus 297 DG~~I~f~s~~~--g--~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 297 DSQNLAYTSDQA--G--RPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred CCCEEEEEeCCC--C--CceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 554 44333221 1 2478888988776555532 11111122233456544443322 346889999999988776
Q ss_pred CCCCCCccccCCeEEEEeCCEEEEEcC
Q 021759 239 GDKFPCEVMHRPFAVNGVEGKIYVVSS 265 (308)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~v~gG 265 (308)
... . .......-|++.+++.+
T Consensus 372 ~~~-~-----~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 372 DTF-L-----DETPSIAPNGTMVIYSS 392 (429)
T ss_pred CCC-C-----CCCceECCCCCEEEEEE
Confidence 321 1 11222345666555544
No 99
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.16 E-value=4.4 Score=36.98 Aligned_cols=146 Identities=14% Similarity=0.035 Sum_probs=77.4
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 161 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 161 (308)
..++++|..+++.+.+...+..........-+.+|++....+ ...+++++|..+++.+.+...+.. .......-
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~Lt~~~~~-~~~~~~sp 299 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG-----GNTDIYTMDLRSGTTTRLTDSPAI-DTSPSYSP 299 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC-----CCceEEEEECCCCceEEccCCCCc-cCceeEcC
Confidence 578999998888777665443222222222244555443332 236789999988877766543321 11112223
Q ss_pred CCE-EEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecC--CcceEEEeCCCCceEEec
Q 021759 162 GSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHG--DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 162 ~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~--~~~~~~yd~~~~~W~~~~ 238 (308)
+++ |+...... + ...++++|..+...+.+.. ...........-+++..++.... ...++.+|++++..+.+.
T Consensus 300 DG~~i~f~s~~~--g--~~~Iy~~d~~g~~~~~lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 300 DGSQIVFESDRS--G--SPQLYVMNADGSNPRRISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT 374 (435)
T ss_pred CCCEEEEEECCC--C--CCeEEEEECCCCCeEEeec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 444 54432221 1 2578999988776666543 11111122233455533332221 357889998777665553
No 100
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.99 E-value=4.7 Score=36.68 Aligned_cols=144 Identities=10% Similarity=0.004 Sum_probs=81.9
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcceEEEEeC-CEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFFASGNVN-GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
.++|++|..+++=+.+...+.. .......-+ .+|.+.-..+ ...+++.+|..+++++++...+.. .......
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~S 285 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNTKTLTQITNYPGI-DVNGNFV 285 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccC-----CCcEEEEEECCCCcEEEcccCCCc-cCccEEC
Confidence 4789999988765665542211 111112224 4565554332 246899999999988887654431 1111222
Q ss_pred EC-CEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecC--------CcceEEEeCCC
Q 021759 161 MG-SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHG--------DCPMKQYNPDD 231 (308)
Q Consensus 161 ~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~--------~~~~~~yd~~~ 231 (308)
-| .+|+...... ....++++|..++..+++... . .. .....-+++..++-... ...++.+|+++
T Consensus 286 PDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~-g-~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~ 358 (419)
T PRK04043 286 EDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFH-G-KN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS 358 (419)
T ss_pred CCCCEEEEEECCC----CCceEEEEECCCCCeEeCccC-C-Cc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence 24 4677664432 125899999998888666431 1 11 12334455533332221 14789999999
Q ss_pred CceEEecC
Q 021759 232 DTWRYVGG 239 (308)
Q Consensus 232 ~~W~~~~~ 239 (308)
+.++.+..
T Consensus 359 g~~~~LT~ 366 (419)
T PRK04043 359 DYIRRLTA 366 (419)
T ss_pred CCeEECCC
Confidence 99988864
No 101
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.97 E-value=7.2 Score=38.73 Aligned_cols=101 Identities=10% Similarity=0.087 Sum_probs=54.6
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE--ECCEEEEEecccCCCCcCCeEEEEeCCCCc
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV--MGSKMYVTEGWTWPFMFSPRGGVYDINKDT 190 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 190 (308)
++.+++.||.+ ..+.+||..+..-. ..+.....-..+.. .++..++.|+.+ ..+.+||+.+..
T Consensus 587 ~~~~L~Sgs~D-------g~v~iWd~~~~~~~--~~~~~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~ 651 (793)
T PLN00181 587 DPTLLASGSDD-------GSVKLWSINQGVSI--GTIKTKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPK 651 (793)
T ss_pred CCCEEEEEcCC-------CEEEEEECCCCcEE--EEEecCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCC
Confidence 56778888876 56888898765321 11111111111111 257788888765 589999987542
Q ss_pred --eeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCC
Q 021759 191 --WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDD 231 (308)
Q Consensus 191 --W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~ 231 (308)
...+.. ...........++..++.++. ...+..||+..
T Consensus 652 ~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~-D~~ikiWd~~~ 691 (793)
T PLN00181 652 LPLCTMIG--HSKTVSYVRFVDSSTLVSSST-DNTLKLWDLSM 691 (793)
T ss_pred ccceEecC--CCCCEEEEEEeCCCEEEEEEC-CCEEEEEeCCC
Confidence 111111 111111222346666666665 45788898864
No 102
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.91 E-value=5.4 Score=37.09 Aligned_cols=113 Identities=11% Similarity=0.154 Sum_probs=62.7
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCC--CccccCCCC----CCC-cceEEEEeC-CEEEEEcCCCCCCCCCCCeEEE
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTN--QWQLASPML----TPR-SFFASGNVN-GKIMAVGGTGANINETMTAVEC 135 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~----~~r-~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~ 135 (308)
++.||+.... ..++.+|..++ .|+.-...+ .+. ....++..+ ++||+... + ..++.
T Consensus 61 ~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~-------g~v~A 124 (488)
T cd00216 61 DGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-D-------GRLVA 124 (488)
T ss_pred CCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-C-------CeEEE
Confidence 8899987432 46899999877 586533221 111 111233446 78886432 2 46889
Q ss_pred EeCCCC--ceeeCcCCcC-cc--cceeEEEECCEEEEEecccCCC---CcCCeEEEEeCCCCc--eee
Q 021759 136 YDPESD--TWTTAAKLRM-GL--ARYDSAVMGSKMYVTEGWTWPF---MFSPRGGVYDINKDT--WNL 193 (308)
Q Consensus 136 yd~~t~--~W~~~~~~~~-~r--~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~~~~--W~~ 193 (308)
+|..|. .|+.-...+. .. ...+.++.++.+|+ |...... .....++.||..+++ |+.
T Consensus 125 lD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 125 LDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred EECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 999876 5765432211 00 12233455677665 4322111 123578999998764 864
No 103
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.78 E-value=5.7 Score=36.93 Aligned_cols=164 Identities=13% Similarity=0.114 Sum_probs=83.1
Q ss_pred CceeEEEeCCCC--CccccCCCC-C--CCcc--eEEE---EeCCE---EEEEcCCCCCCCCCCCeEEEEeCCCCc--eee
Q 021759 81 MQSTIMYRATTN--QWQLASPML-T--PRSF--FASG---NVNGK---IMAVGGTGANINETMTAVECYDPESDT--WTT 145 (308)
Q Consensus 81 ~~~~~~yd~~~~--~W~~~~~~~-~--~r~~--~~~~---~~~~~---iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~ 145 (308)
.+.++.+|..++ .|+.-...+ . -+.. ..+. .+++. +.++|..+ ..++.+|..+.+ |+.
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~-------G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN-------GFFYVLDRTTGKLISAR 327 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC-------ceEEEEECCCCcEeeEe
Confidence 457999999988 586422111 0 0111 1111 12332 34444443 458899998884 754
Q ss_pred CcCCcCcccceeEEEECCEEEEEecccC-----------CCCcCCeEEEEeCCCCc--eeecccCcc------C-cccee
Q 021759 146 AAKLRMGLARYDSAVMGSKMYVTEGWTW-----------PFMFSPRGGVYDINKDT--WNLMSDGMK------E-GWTGI 205 (308)
Q Consensus 146 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~-----------~~~~~~~~~~yd~~~~~--W~~~~~~~~------~-~~~~~ 205 (308)
-.. ....+.-.+.+|+-..... .......+..+|..+.+ |+.-..... . ...+.
T Consensus 328 ~~~------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~ 401 (488)
T cd00216 328 PEV------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGS 401 (488)
T ss_pred Eee------ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcc
Confidence 211 0011112266776432110 01123578899988764 875432110 1 11222
Q ss_pred EEEECCEEEEEeecCCcceEEEeCCCCc--eEEecCCCCCCccccCCeEEEEeCCEEEEEc
Q 021759 206 SIVLEGKLFVISEHGDCPMKQYNPDDDT--WRYVGGDKFPCEVMHRPFAVNGVEGKIYVVS 264 (308)
Q Consensus 206 ~~~~~~~ly~~gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~g 264 (308)
.+..++.||+.. . ...++++|.++++ |+.- ++-+ ......+...++++||.-
T Consensus 402 ~~~~g~~v~~g~-~-dG~l~ald~~tG~~lW~~~--~~~~---~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 402 LATAGNLVFAGA-A-DGYFRAFDATTGKELWKFR--TPSG---IQATPMTYEVNGKQYVGV 455 (488)
T ss_pred eEecCCeEEEEC-C-CCeEEEEECCCCceeeEEE--CCCC---ceEcCEEEEeCCEEEEEE
Confidence 345566666643 3 5589999998875 7642 1222 122233345699999764
No 104
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.61 E-value=5 Score=35.72 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=84.2
Q ss_pred CCCEEEEEeccCCCCCCCCceeEEEeCCCCC--ccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCC
Q 021759 63 RQGKLFVLGGMRSDTETPMQSTIMYRATTNQ--WQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPES 140 (308)
Q Consensus 63 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t 140 (308)
.++++|+... + ..++.+|+.+++ |.....-...........-+|+||+- ..+ + .+++||..+
T Consensus 67 ~dg~v~~~~~---~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~--g-----~~y~ld~~~ 130 (370)
T COG1520 67 GDGTVYVGTR---D-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWD--G-----KLYALDAST 130 (370)
T ss_pred eCCeEEEecC---C-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-ccc--c-----eEEEEECCC
Confidence 3888888711 1 168999999986 86544320011111112227887654 332 2 789999965
Q ss_pred C--ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCC--ceeecccC-ccCccceeEEEECCEEEE
Q 021759 141 D--TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD--TWNLMSDG-MKEGWTGISIVLEGKLFV 215 (308)
Q Consensus 141 ~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~-~~~~~~~~~~~~~~~ly~ 215 (308)
. .|+.-.... ++.....++.++.+|+... ...++++|..+. .|+.-... ......+..+..++.+|+
T Consensus 131 G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~-------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~ 202 (370)
T COG1520 131 GTLVWSRNVGGS-PYYASPPVVGDGTVYVGTD-------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYV 202 (370)
T ss_pred CcEEEEEecCCC-eEEecCcEEcCcEEEEecC-------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEE
Confidence 5 686543322 3333345556788887531 147888888765 48743321 222222222356777777
Q ss_pred EeecCCcceEEEeCCCC--ceEE
Q 021759 216 ISEHGDCPMKQYNPDDD--TWRY 236 (308)
Q Consensus 216 ~gg~~~~~~~~yd~~~~--~W~~ 236 (308)
-.......++.+|++++ .|+.
T Consensus 203 ~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 203 GSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred ecCCCcceEEEEEccCCcEeeee
Confidence 53200226899999776 4774
No 105
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.49 E-value=3.4 Score=33.90 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=90.2
Q ss_pred CEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCcee
Q 021759 65 GKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWT 144 (308)
Q Consensus 65 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~ 144 (308)
..+.+.|++ -..+..+|..+++.+++.-+...+..-..+.+.+..+|.|..+ ..+..||.+.++-.
T Consensus 113 sSVv~Sgsf-------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~D-------GtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 113 SSVVASGSF-------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVD-------GTVRTYDIRKGTLS 178 (307)
T ss_pred ceEEEeccc-------cceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccC-------CcEEEEEeecceee
Confidence 345666655 2457889999999988888888888888888888888888776 45788998877532
Q ss_pred eCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceee-cccCccCccceeEEEECCEEEEEeecCCcc
Q 021759 145 TAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNL-MSDGMKEGWTGISIVLEGKLFVISEHGDCP 223 (308)
Q Consensus 145 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~ 223 (308)
. .-+..| .......-++.-.++|-.+ ..+..+|-++++--. ........+.--++..+..--+++|.....
T Consensus 179 s-Dy~g~p-it~vs~s~d~nc~La~~l~------stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~ 250 (307)
T KOG0316|consen 179 S-DYFGHP-ITSVSFSKDGNCSLASSLD------STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK 250 (307)
T ss_pred h-hhcCCc-ceeEEecCCCCEEEEeecc------ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCce
Confidence 1 112222 1222223355555556554 467777777765311 111111111122344444456677766678
Q ss_pred eEEEeCCCCc
Q 021759 224 MKQYNPDDDT 233 (308)
Q Consensus 224 ~~~yd~~~~~ 233 (308)
++.||+...+
T Consensus 251 Vy~wdLvd~~ 260 (307)
T KOG0316|consen 251 VYFWDLVDET 260 (307)
T ss_pred EEEEEeccce
Confidence 8999987665
No 106
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.43 E-value=4.1 Score=34.15 Aligned_cols=159 Identities=15% Similarity=0.103 Sum_probs=91.3
Q ss_pred CceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCC---ccccCCCC---------CCCcceEEEEeCCEEEEEcCC
Q 021759 55 AFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQ---WQLASPML---------TPRSFFASGNVNGKIMAVGGT 122 (308)
Q Consensus 55 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~~---------~~r~~~~~~~~~~~iyv~GG~ 122 (308)
+.|...++.++.+|.-- ...+.+.+||..+++ +..++... .+-...-+++-++-|+|+=..
T Consensus 69 ~~GtG~vVYngslYY~~-------~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat 141 (250)
T PF02191_consen 69 WQGTGHVVYNGSLYYNK-------YNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYAT 141 (250)
T ss_pred eccCCeEEECCcEEEEe-------cCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEec
Confidence 34444344477777662 346789999999985 44454321 111234455567778888555
Q ss_pred CCCCCCCCCeEEEEeCCCC----ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCc
Q 021759 123 GANINETMTAVECYDPESD----TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGM 198 (308)
Q Consensus 123 ~~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 198 (308)
. .+...-.+-..||.+- +|.. ..+.+..+ .+.++=|.+|++...+... ..-.+.||+.+++=..+.-+.
T Consensus 142 ~--~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~-naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i~f 214 (250)
T PF02191_consen 142 E--DNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAG-NAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSIPF 214 (250)
T ss_pred C--CCCCcEEEEeeCcccCceEEEEEe--ccCchhhc-ceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceeeee
Confidence 3 2222234556677653 5653 23333232 3555668899987765322 345688999988765554434
Q ss_pred cCccceeE-EEE---CCEEEEEeecCCcceEEEeCC
Q 021759 199 KEGWTGIS-IVL---EGKLFVISEHGDCPMKQYNPD 230 (308)
Q Consensus 199 ~~~~~~~~-~~~---~~~ly~~gg~~~~~~~~yd~~ 230 (308)
+.+....+ +.. +.+||+... ..+..|++.
T Consensus 215 ~~~~~~~~~l~YNP~dk~LY~wd~---G~~v~Y~v~ 247 (250)
T PF02191_consen 215 PNPYGNISMLSYNPRDKKLYAWDN---GYQVTYDVR 247 (250)
T ss_pred ccccCceEeeeECCCCCeEEEEEC---CeEEEEEEE
Confidence 44433333 333 688999873 366777654
No 107
>PTZ00421 coronin; Provisional
Probab=93.28 E-value=7 Score=36.40 Aligned_cols=148 Identities=6% Similarity=-0.005 Sum_probs=72.8
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCc-----cccCCCCCCCcceEEEEe---CCEEEEEcCCCCCCCCCCCeEEE
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQW-----QLASPMLTPRSFFASGNV---NGKIMAVGGTGANINETMTAVEC 135 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-----~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~ 135 (308)
++.+++.|+.+ ..+.+||..++.. ..+..+......-..+.+ ++.+++.||.+ ..+.+
T Consensus 87 d~~~LaSgS~D-------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-------gtVrI 152 (493)
T PTZ00421 87 DPQKLFTASED-------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-------MVVNV 152 (493)
T ss_pred CCCEEEEEeCC-------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC-------CEEEE
Confidence 45666777652 2456677655422 111122222222222333 34677788776 66889
Q ss_pred EeCCCCceee-CcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCce-eecccCccCccceeEE-EECCE
Q 021759 136 YDPESDTWTT-AAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTW-NLMSDGMKEGWTGISI-VLEGK 212 (308)
Q Consensus 136 yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~-~~~~~ 212 (308)
||..+++-.. +...... ........++.+++.|+.+ ..+.+||+.++.- ..+.. ........++ ..++.
T Consensus 153 WDl~tg~~~~~l~~h~~~-V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSDQ-ITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRKD 224 (493)
T ss_pred EECCCCeEEEEEcCCCCc-eEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEEEec-CCCCcceEEEEcCCCC
Confidence 9998764321 1111111 1111122377888888876 5789999987652 12211 1111111122 22333
Q ss_pred EEEEeecC---CcceEEEeCCCCc
Q 021759 213 LFVISEHG---DCPMKQYNPDDDT 233 (308)
Q Consensus 213 ly~~gg~~---~~~~~~yd~~~~~ 233 (308)
.++..|.+ ...+..||+.+..
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCC
Confidence 33433432 4579999987543
No 108
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.24 E-value=4.2 Score=38.24 Aligned_cols=113 Identities=14% Similarity=0.224 Sum_probs=65.8
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCC--CccccCCCCCC--------CcceEEEEeCCEEEEEcCCCCCCCCCCCeE
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTN--QWQLASPMLTP--------RSFFASGNVNGKIMAVGGTGANINETMTAV 133 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 133 (308)
++.||+... ...++.+|..++ .|+.-...+.. ......+..+++||+.. .+ ..+
T Consensus 69 ~g~vyv~s~--------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~d-------g~l 132 (527)
T TIGR03075 69 DGVMYVTTS--------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-LD-------ARL 132 (527)
T ss_pred CCEEEEECC--------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-CC-------CEE
Confidence 889998743 235899999887 58654322211 11223455688888643 22 458
Q ss_pred EEEeCCCC--ceeeC-cCCcCc-ccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc--eee
Q 021759 134 ECYDPESD--TWTTA-AKLRMG-LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNL 193 (308)
Q Consensus 134 ~~yd~~t~--~W~~~-~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~ 193 (308)
..+|..|. .|+.- ...... ....+.++.+++||+-.... +......+..||.++++ |+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEec
Confidence 99999887 47643 222211 12223456788888753211 12233578999998875 764
No 109
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.09 E-value=5.5 Score=34.67 Aligned_cols=145 Identities=12% Similarity=0.022 Sum_probs=70.2
Q ss_pred EEEEEeccCCCCCCCCceeEEEeCCC-CCccccCCCCCCCcceEEEEe-C-CEEEEEcCCCCCCCCCCCeEEEEeCC-CC
Q 021759 66 KLFVLGGMRSDTETPMQSTIMYRATT-NQWQLASPMLTPRSFFASGNV-N-GKIMAVGGTGANINETMTAVECYDPE-SD 141 (308)
Q Consensus 66 ~iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~-t~ 141 (308)
++|+..+. ...+..||..+ ++++.+...+.....+.++.. + ..+|+.+.. ...+..|+.. ++
T Consensus 3 ~~y~~~~~-------~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~-------~~~i~~~~~~~~g 68 (330)
T PRK11028 3 IVYIASPE-------SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP-------EFRVLSYRIADDG 68 (330)
T ss_pred EEEEEcCC-------CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC-------CCcEEEEEECCCC
Confidence 57777543 23467777754 466665555433222223222 4 456664432 2556677775 45
Q ss_pred ceeeCcCCcCccc-ceeEEEECC-EEEEEecccCCCCcCCeEEEEeCCCCc-e-eecccC-ccCccceeEEEECCE-EEE
Q 021759 142 TWTTAAKLRMGLA-RYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDT-W-NLMSDG-MKEGWTGISIVLEGK-LFV 215 (308)
Q Consensus 142 ~W~~~~~~~~~r~-~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~-W-~~~~~~-~~~~~~~~~~~~~~~-ly~ 215 (308)
+++.+...+.+.. .+.+..-++ .+|+..-.+ +.+.+||..++. . +.+... .....++..+.-+++ +|+
T Consensus 69 ~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 69 ALTFAAESPLPGSPTHISTDHQGRFLFSASYNA------NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred ceEEeeeecCCCCceEEEECCCCCEEEEEEcCC------CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE
Confidence 6665543333211 222222345 466653222 578888876432 1 112110 111112222223454 555
Q ss_pred EeecCCcceEEEeCCC
Q 021759 216 ISEHGDCPMKQYNPDD 231 (308)
Q Consensus 216 ~gg~~~~~~~~yd~~~ 231 (308)
.. ...+.+.+||+++
T Consensus 143 ~~-~~~~~v~v~d~~~ 157 (330)
T PRK11028 143 PC-LKEDRIRLFTLSD 157 (330)
T ss_pred ee-CCCCEEEEEEECC
Confidence 44 4467899999876
No 110
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.98 E-value=5.5 Score=34.39 Aligned_cols=176 Identities=11% Similarity=0.160 Sum_probs=78.3
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCC-CCCC-Ccce-EEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASP-MLTP-RSFF-ASGNVNGKIMAVGGTGANINETMTAVECYDPES 140 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~-r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t 140 (308)
+++-|++|-. ..+++=+-.-.+|+.... ...+ ...+ ++...++..|++|... -+..-.-.-
T Consensus 27 ~~~G~~VG~~--------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g--------~ll~T~DgG 90 (302)
T PF14870_consen 27 PNHGWAVGAY--------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG--------LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEETT--------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT--------EEEEESSTT
T ss_pred CCEEEEEecC--------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc--------eEEEecCCC
Confidence 5677888643 112222222347987763 2222 2333 3444578899987542 233333344
Q ss_pred CceeeCc-CCcCcccceeEEE-ECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEee
Q 021759 141 DTWTTAA-KLRMGLARYDSAV-MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISE 218 (308)
Q Consensus 141 ~~W~~~~-~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg 218 (308)
.+|++++ +.+.+-..+.... -++.+++++.. ..+++=.-.-.+|+.+..............-++++++++.
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC
Confidence 5899985 2233333344433 46677776653 2555555556689987652332222222234667666664
Q ss_pred cCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCc
Q 021759 219 HGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGL 267 (308)
Q Consensus 219 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~ 267 (308)
. ..-+...|+-...|+...-. .. .|.......-++.|+++.-+.
T Consensus 164 ~-G~~~~s~~~G~~~w~~~~r~-~~---~riq~~gf~~~~~lw~~~~Gg 207 (302)
T PF14870_consen 164 R-GNFYSSWDPGQTTWQPHNRN-SS---RRIQSMGFSPDGNLWMLARGG 207 (302)
T ss_dssp T-SSEEEEE-TT-SS-EEEE---SS---S-EEEEEE-TTS-EEEEETTT
T ss_pred c-ccEEEEecCCCccceEEccC-cc---ceehhceecCCCCEEEEeCCc
Confidence 3 44556778888899988631 12 133333345677887776443
No 111
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.65 E-value=11 Score=37.08 Aligned_cols=114 Identities=16% Similarity=0.281 Sum_probs=59.9
Q ss_pred CCCEEEEEeccCCCCCCCCceeEEEeCCCC--CccccCCCCCC--------Cc--ceE-------------EEEeCCEEE
Q 021759 63 RQGKLFVLGGMRSDTETPMQSTIMYRATTN--QWQLASPMLTP--------RS--FFA-------------SGNVNGKIM 117 (308)
Q Consensus 63 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~--------r~--~~~-------------~~~~~~~iy 117 (308)
+++.||+.. ..+.++.+|..++ .|+.-+..+.. |- ++. .+..+++||
T Consensus 193 vgg~lYv~t--------~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~ 264 (764)
T TIGR03074 193 VGDTLYLCT--------PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRII 264 (764)
T ss_pred ECCEEEEEC--------CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEE
Confidence 399999983 2456888898877 48654433211 10 000 112244665
Q ss_pred EEcCCCCCCCCCCCeEEEEeCCCCc--eee-----------CcCCcCcc--cceeEEEECCEEEEEecccCC----CCcC
Q 021759 118 AVGGTGANINETMTAVECYDPESDT--WTT-----------AAKLRMGL--ARYDSAVMGSKMYVTEGWTWP----FMFS 178 (308)
Q Consensus 118 v~GG~~~~~~~~~~~~~~yd~~t~~--W~~-----------~~~~~~~r--~~~~~~~~~~~iyv~GG~~~~----~~~~ 178 (308)
+ +..+ ..+..+|..|++ |.. +.+.+... ...+-++.+++||+ |+...+ ....
T Consensus 265 ~-~T~D-------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~ 335 (764)
T TIGR03074 265 L-PTSD-------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPS 335 (764)
T ss_pred E-ecCC-------CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCC
Confidence 4 3222 346667776663 431 12222111 22334567888777 543211 1234
Q ss_pred CeEEEEeCCCCc--eee
Q 021759 179 PRGGVYDINKDT--WNL 193 (308)
Q Consensus 179 ~~~~~yd~~~~~--W~~ 193 (308)
..+..||.+|++ |+.
T Consensus 336 G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAW 352 (764)
T ss_pred cEEEEEECCCCcEeeEE
Confidence 578999999885 764
No 112
>PTZ00421 coronin; Provisional
Probab=92.61 E-value=8.8 Score=35.76 Aligned_cols=114 Identities=10% Similarity=0.135 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceee-CcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCce
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTT-AAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTW 191 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 191 (308)
++.+++.|+.+ ..+.+||+.+++-.. +......+........++..++..|.+. .....+.+||+.+..-
T Consensus 179 dG~lLatgs~D-------g~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~--s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 179 DGSLLCTTSKD-------KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSK--SQQRQIMLWDTRKMAS 249 (493)
T ss_pred CCCEEEEecCC-------CEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCC--CCCCeEEEEeCCCCCC
Confidence 67788888876 668899998765221 1111111111111122333334444321 1125789999875431
Q ss_pred --eecccCccCccceeEEE--ECCEEEEEeecCCcceEEEeCCCCceEEe
Q 021759 192 --NLMSDGMKEGWTGISIV--LEGKLFVISEHGDCPMKQYNPDDDTWRYV 237 (308)
Q Consensus 192 --~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~~~~~~yd~~~~~W~~~ 237 (308)
.... ........... .++.++++||.....+..||..+++....
T Consensus 250 p~~~~~--~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 250 PYSTVD--LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred ceeEec--cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 1111 11111111122 25666666665456799999988876543
No 113
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=92.48 E-value=7.2 Score=34.48 Aligned_cols=118 Identities=10% Similarity=-0.099 Sum_probs=67.2
Q ss_pred CEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE-CCEEEEEeccc---CCCCcCCeEEEEeCCCC
Q 021759 114 GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM-GSKMYVTEGWT---WPFMFSPRGGVYDINKD 189 (308)
Q Consensus 114 ~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~---~~~~~~~~~~~yd~~~~ 189 (308)
.++||.-... ... .+.+.++|..+.+- +...+.+..-+....- +..||+...+- ..+...+.+.+||+++.
T Consensus 13 ~~v~V~d~~~--~~~-~~~v~ViD~~~~~v--~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 13 RRVYVLDPGH--FAA-TTQVYTIDGEAGRV--LGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CEEEEECCcc--ccc-CceEEEEECCCCEE--EEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 4577775542 111 27899999887543 3333333322223333 45699886631 12344589999999998
Q ss_pred cee-ecccCccCc------cceeEEEECCE-EEEEeecCCcceEEEeCCCCceEE
Q 021759 190 TWN-LMSDGMKEG------WTGISIVLEGK-LFVISEHGDCPMKQYNPDDDTWRY 236 (308)
Q Consensus 190 ~W~-~~~~~~~~~------~~~~~~~~~~~-ly~~gg~~~~~~~~yd~~~~~W~~ 236 (308)
+-. +++.+..++ .......-+|+ ||+..-.....+-++|+++++-..
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 753 344321111 11222344666 666654336789999999887543
No 114
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.42 E-value=8.4 Score=35.05 Aligned_cols=103 Identities=11% Similarity=-0.008 Sum_probs=58.2
Q ss_pred CCeEEEEeCCCCceeeCcCCcCcccceeEEEECC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEE
Q 021759 130 MTAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIV 208 (308)
Q Consensus 130 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~ 208 (308)
...++++|+.+++-+.+...+... ......-++ +|++....+ + ...++++|+.++..+.+... ..........
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~-~~~~~SpDG~~la~~~~~~--g--~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~~s 295 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLN-GAPAWSPDGSKLAFVLSKD--G--NPEIYVMDLASRQLSRVTNH-PAIDTEPFWG 295 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCc-CCeEECCCCCEEEEEEccC--C--CceEEEEECCCCCeEEcccC-CCCcCCeEEC
Confidence 357999999988877765433211 111222244 455432221 1 15799999999888776531 1111112223
Q ss_pred ECCE-EEEEeecC-CcceEEEeCCCCceEEec
Q 021759 209 LEGK-LFVISEHG-DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 209 ~~~~-ly~~gg~~-~~~~~~yd~~~~~W~~~~ 238 (308)
-+++ |++..... ...++.+|..+++++.+.
T Consensus 296 pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 296 KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 3544 55543222 347999999998888774
No 115
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.40 E-value=8.9 Score=35.34 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCcee
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN 192 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 192 (308)
.+++++.|+.+ ..+.++|+.+.+-.+.-..-.......+..-++.+++.+..+ ..+.+||..++.-.
T Consensus 257 ~g~~i~Sgs~D-------~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 257 DGNLLVSGSDD-------GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGSKL 323 (456)
T ss_pred CCCEEEEecCC-------CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCcee
Confidence 45888888887 678999998865433211111222222333477888877665 58999999887732
Q ss_pred ---ecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCc
Q 021759 193 ---LMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 193 ---~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
.+...........+....+..|++.+.....+..||+....
T Consensus 324 ~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 324 CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 22221111122233343455555555545578888887654
No 116
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.30 E-value=1.6 Score=32.32 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=53.6
Q ss_pred EEECCEEEEEeec---CCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeEEEeeeec-CCCc
Q 021759 207 IVLEGKLFVISEH---GDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQ-NGGI 282 (308)
Q Consensus 207 ~~~~~~ly~~gg~---~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~~-~~~~ 282 (308)
+++||.||-..-. ....+..||+++.+|+.+.....+ ........++.++|+|-++.-........+.-|. -|.+
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~-~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDP-YSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeee-ccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 4678998877654 256899999999999988642011 2236667788999999988754332222233332 3666
Q ss_pred eeeeEE
Q 021759 283 SAEWKV 288 (308)
Q Consensus 283 ~~~W~~ 288 (308)
+.+|.+
T Consensus 81 k~~Wsk 86 (129)
T PF08268_consen 81 KQEWSK 86 (129)
T ss_pred cceEEE
Confidence 789984
No 117
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=91.91 E-value=6.6 Score=32.76 Aligned_cols=156 Identities=14% Similarity=0.241 Sum_probs=78.4
Q ss_pred cceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeC---CCCceee--CcCCcC-------cccceeEEEECCEEEEEeccc
Q 021759 105 SFFASGNVNGKIMAVGGTGANINETMTAVECYDP---ESDTWTT--AAKLRM-------GLARYDSAVMGSKMYVTEGWT 172 (308)
Q Consensus 105 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~---~t~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~ 172 (308)
++.++.++++++|++=-...-....+...+.|+- ..+.|+. ++..+. ...-|+.+.+++.-|.+|-.+
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHn 155 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHN 155 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE
T ss_pred eeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEecc
Confidence 4667888999999874321011223344455542 4567865 444443 234566778888888998877
Q ss_pred CCCCcCCeEEEEeCCCCcee--------ecccCccCccceeE-EEECCEEEEEeecC-----CcceEEEeCCCCceEEec
Q 021759 173 WPFMFSPRGGVYDINKDTWN--------LMSDGMKEGWTGIS-IVLEGKLFVISEHG-----DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 173 ~~~~~~~~~~~yd~~~~~W~--------~~~~~~~~~~~~~~-~~~~~~ly~~gg~~-----~~~~~~yd~~~~~W~~~~ 238 (308)
++.....--..|-+ +.|. .++....+..+..| -.++|+||+.--.. ...+.+-+.....|..+.
T Consensus 156 GD~sPRe~G~~yfs--~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr 233 (367)
T PF12217_consen 156 GDVSPRELGFLYFS--DAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR 233 (367)
T ss_dssp -SSSS-EEEEEEET--TTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE
T ss_pred CCCCcceeeEEEec--ccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc
Confidence 65544333333322 2232 22222233333344 36799999885322 345777778888899885
Q ss_pred CCCCCCccccCCeEEEEeCCEEEEEcC
Q 021759 239 GDKFPCEVMHRPFAVNGVEGKIYVVSS 265 (308)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~v~gG 265 (308)
+|-..-....-.+.+++.||++|-
T Consensus 234 ---fp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 234 ---FPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp ----TT---SS---EEEETTEEEEEEE
T ss_pred ---ccccccccCCCceeeCCEEEEEec
Confidence 331111333445788999999984
No 118
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.88 E-value=9.4 Score=34.46 Aligned_cols=156 Identities=8% Similarity=0.045 Sum_probs=77.5
Q ss_pred CCCccccCCCC-CCCcceEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcC------CcCcc---------
Q 021759 91 TNQWQLASPML-TPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAK------LRMGL--------- 153 (308)
Q Consensus 91 ~~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~------~~~~r--------- 153 (308)
-.+|++++..+ .+-....+... ++.++++|... .+++-+-.-.+|+.+.. +....
T Consensus 165 G~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G--------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~ 236 (398)
T PLN00033 165 GETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEG--------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASY 236 (398)
T ss_pred CCCceECccccCCCCCceEEEEECCCceEEEeccc--------eEEEECCCCCCceEcccccccccccccccccccccce
Confidence 35898876432 12222334444 45688887543 24444444558987621 11110
Q ss_pred ---cceeEEE-ECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeC
Q 021759 154 ---ARYDSAV-MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNP 229 (308)
Q Consensus 154 ---~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~ 229 (308)
....+.. -+++++++|-.. +-+...|.....|+.+..+............++.+++++.. ..+..-+.
T Consensus 237 y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~--G~l~~S~d 308 (398)
T PLN00033 237 YTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG--GGLYVSKG 308 (398)
T ss_pred eccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC--ceEEEecC
Confidence 1111222 355666665432 22223444444599887645454444445668889988753 24555444
Q ss_pred CCCce-----EEecCCCCCCccccCCeEEEE-eCCEEEEEcCC
Q 021759 230 DDDTW-----RYVGGDKFPCEVMHRPFAVNG-VEGKIYVVSSG 266 (308)
Q Consensus 230 ~~~~W-----~~~~~~~~~~~~~~~~~~~~~-~~~~l~v~gG~ 266 (308)
....| .++. .+ .....-..+.. -++.+++.|..
T Consensus 309 ~G~~~~~~~f~~~~---~~-~~~~~l~~v~~~~d~~~~a~G~~ 347 (398)
T PLN00033 309 TGLTEEDFDFEEAD---IK-SRGFGILDVGYRSKKEAWAAGGS 347 (398)
T ss_pred CCCcccccceeecc---cC-CCCcceEEEEEcCCCcEEEEECC
Confidence 44444 4433 22 00011233333 36788888864
No 119
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.80 E-value=10 Score=34.80 Aligned_cols=103 Identities=15% Similarity=-0.006 Sum_probs=58.7
Q ss_pred CCeEEEEeCCCCceeeCcCCcCcccceeEEEECC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEE
Q 021759 130 MTAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIV 208 (308)
Q Consensus 130 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~ 208 (308)
...++++|+.+++-+.+...+..... ....-++ +|++....+ + ...++++|..++..+.+.... .........
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~-~~wSPDG~~La~~~~~~--g--~~~Iy~~dl~tg~~~~lt~~~-~~~~~p~wS 314 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGA-PRFSPDGKKLALVLSKD--G--QPEIYVVDIATKALTRITRHR-AIDTEPSWH 314 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCC-eeECCCCCEEEEEEeCC--C--CeEEEEEECCCCCeEECccCC-CCccceEEC
Confidence 36799999988876666544322111 1222344 465543322 1 257999999998887765411 111112233
Q ss_pred ECCE-EEEEeecC-CcceEEEeCCCCceEEec
Q 021759 209 LEGK-LFVISEHG-DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 209 ~~~~-ly~~gg~~-~~~~~~yd~~~~~W~~~~ 238 (308)
-+++ |++..... ...++.+|+++++++.+.
T Consensus 315 pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 315 PDGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 3555 44433221 457999999999988874
No 120
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.74 E-value=8 Score=33.40 Aligned_cols=174 Identities=14% Similarity=0.213 Sum_probs=81.9
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCCCc
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDT 142 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 142 (308)
++.++++|.. ..+++=.-.-.+|+.+..-.. -....+... ++++++++... +-....|+....
T Consensus 114 ~~~~~l~~~~--------G~iy~T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~~~ 177 (302)
T PF14870_consen 114 DGSAELAGDR--------GAIYRTTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVSSRG-------NFYSSWDPGQTT 177 (302)
T ss_dssp TTEEEEEETT----------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS-------SEEEEE-TT-SS
T ss_pred CCcEEEEcCC--------CcEEEeCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEECcc-------cEEEEecCCCcc
Confidence 5566666532 234444444558987764222 222233333 67766676553 334567888888
Q ss_pred eeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEe--CCCCceeecccCccCccceeE-EEE--CCEEEEEe
Q 021759 143 WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYD--INKDTWNLMSDGMKEGWTGIS-IVL--EGKLFVIS 217 (308)
Q Consensus 143 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd--~~~~~W~~~~~~~~~~~~~~~-~~~--~~~ly~~g 217 (308)
|+........|-......-++.++++. .. ..+..=+ ....+|.+...+......+.. +.. ++.+++.|
T Consensus 178 w~~~~r~~~~riq~~gf~~~~~lw~~~-~G------g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~g 250 (302)
T PF14870_consen 178 WQPHNRNSSRRIQSMGFSPDGNLWMLA-RG------GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVG 250 (302)
T ss_dssp -EEEE--SSS-EEEEEE-TTS-EEEEE-TT------TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEE
T ss_pred ceEEccCccceehhceecCCCCEEEEe-CC------cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEe
Confidence 987765544444444445577887764 21 1333333 234578774433433433322 333 57899999
Q ss_pred ecCCcceEEEeCCCCceEEecC-CCCCCccccCCeEE-EEeCCEEEEEcCC
Q 021759 218 EHGDCPMKQYNPDDDTWRYVGG-DKFPCEVMHRPFAV-NGVEGKIYVVSSG 266 (308)
Q Consensus 218 g~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~-~~~~~~l~v~gG~ 266 (308)
|.. .+++=+-.-++|++... .+.| .....+ ..-+++-|++|..
T Consensus 251 g~G--~l~~S~DgGktW~~~~~~~~~~----~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 251 GSG--TLLVSTDGGKTWQKDRVGENVP----SNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp STT---EEEESSTTSS-EE-GGGTTSS----S---EEEEEETTEEEEE-ST
T ss_pred CCc--cEEEeCCCCccceECccccCCC----CceEEEEEcCCCceEEECCC
Confidence 853 66666667789999864 3344 333444 4456799999974
No 121
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.69 E-value=13 Score=35.76 Aligned_cols=166 Identities=9% Similarity=0.132 Sum_probs=94.2
Q ss_pred CceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 81 MQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 81 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
+..+.+|+..+++..--.+-...|.....-.-+|++.+.|+.+ .++-+||..+.... -.....-.+++++.
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD-------gKVKvWn~~SgfC~--vTFteHts~Vt~v~ 399 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED-------GKVKVWNTQSGFCF--VTFTEHTSGVTAVQ 399 (893)
T ss_pred cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC-------CcEEEEeccCceEE--EEeccCCCceEEEE
Confidence 4456667766655433333233343333334488999999987 66888898776321 12223334444433
Q ss_pred E--CCEEEEEecccCCCCcCCeEEEEeCCCCc-eeecccCccCccceeEEEEC--CEEEEEeecCCcceEEEeCCCCceE
Q 021759 161 M--GSKMYVTEGWTWPFMFSPRGGVYDINKDT-WNLMSDGMKEGWTGISIVLE--GKLFVISEHGDCPMKQYNPDDDTWR 235 (308)
Q Consensus 161 ~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~--~~ly~~gg~~~~~~~~yd~~~~~W~ 235 (308)
+ .++..+-...+ .++-.||...-. ++... .|.+....+++.| |.|.+.|..+...+.+++.+|++--
T Consensus 400 f~~~g~~llssSLD------GtVRAwDlkRYrNfRTft--~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 400 FTARGNVLLSSSLD------GTVRAWDLKRYRNFRTFT--SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred EEecCCEEEEeecC------CeEEeeeecccceeeeec--CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 2 45555554544 367777776532 33333 3444445555666 9999999988788999999999865
Q ss_pred Ee-cCCCCCCccccCCeEEEEeCCEEEEEcCCce
Q 021759 236 YV-GGDKFPCEVMHRPFAVNGVEGKIYVVSSGLN 268 (308)
Q Consensus 236 ~~-~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~ 268 (308)
.+ .+..-| .. .-+....+.+++-|.+++
T Consensus 472 DiLsGHEgP----Vs-~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 472 DILSGHEGP----VS-GLSFSPDGSLLASGSWDK 500 (893)
T ss_pred ehhcCCCCc----ce-eeEEccccCeEEeccccc
Confidence 43 322223 11 112344555655555443
No 122
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.63 E-value=11 Score=34.54 Aligned_cols=102 Identities=15% Similarity=0.023 Sum_probs=57.1
Q ss_pred CeEEEEeCCCCceeeCcCCcCcccceeEEEECC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEE
Q 021759 131 TAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL 209 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 209 (308)
..++++|+.+++.+.+...+..... ....-++ +|++....+ + ..+++++|+.++....+.... .........-
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~-~~~SPDG~~la~~~~~~--g--~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~sp 299 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFA-PRFSPDGRKVVMSLSQG--G--NTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSP 299 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccC-cEECCCCCEEEEEEecC--C--CceEEEEECCCCceEEccCCC-CccCceeEcC
Confidence 6799999999887776544432221 1222355 454443322 1 257999999888766664311 1111122334
Q ss_pred CCE-EEEEeec-CCcceEEEeCCCCceEEec
Q 021759 210 EGK-LFVISEH-GDCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 210 ~~~-ly~~gg~-~~~~~~~yd~~~~~W~~~~ 238 (308)
+++ |+..... ....++.+|.++.+.+.+.
T Consensus 300 DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 300 DGSQIVFESDRSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence 555 4333211 1347999999888777765
No 123
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.63 E-value=4.6 Score=34.37 Aligned_cols=136 Identities=14% Similarity=0.153 Sum_probs=80.6
Q ss_pred eeCcCCcCcc--cceeEEEECCEEEEEecccC---------C-------CCcCCeEEEEeCCCCc----eeecccCccCc
Q 021759 144 TTAAKLRMGL--ARYDSAVMGSKMYVTEGWTW---------P-------FMFSPRGGVYDINKDT----WNLMSDGMKEG 201 (308)
Q Consensus 144 ~~~~~~~~~r--~~~~~~~~~~~iyv~GG~~~---------~-------~~~~~~~~~yd~~~~~----W~~~~~~~~~~ 201 (308)
+.+.+.|..- ...++..+++.||. ||+-. + ...-+.++.||.++++ |++--. -+..
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih-~~~~ 103 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIH-DKTK 103 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccC-Cccc
Confidence 4555555422 33455567888875 88731 0 0113578999998886 544332 3455
Q ss_pred cceeE--EE---ECCEEEEEee--cCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeEEEe
Q 021759 202 WTGIS--IV---LEGKLFVISE--HGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRV 274 (308)
Q Consensus 202 ~~~~~--~~---~~~~ly~~gg--~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~ 274 (308)
|.+-. .. ++++||+.-+ +..-.++..|.+++.=+.+...|.+ -+....|...|-+ .+...+..
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~-------KG~~~~D~a~F~i---~~~~~g~~ 173 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSL-------KGTLVHDYACFGI---NNFHKGVS 173 (339)
T ss_pred cccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCc-------CceEeeeeEEEec---cccccCCc
Confidence 55543 22 3788888754 3345688889999888877654444 3455556566544 22222222
Q ss_pred eeecCCCceeee--EEecC
Q 021759 275 YEEQNGGISAEW--KVMTA 291 (308)
Q Consensus 275 ~~~~~~~~~~~W--~~~~~ 291 (308)
...++|....+| +.++.
T Consensus 174 ~i~~~Dli~~~~~~e~f~~ 192 (339)
T PF09910_consen 174 GIHCLDLISGKWVIESFDV 192 (339)
T ss_pred eEEEEEccCCeEEEEeccc
Confidence 236699999999 55544
No 124
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.58 E-value=16 Score=36.40 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCc--eeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCC-
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD- 189 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~- 189 (308)
++..++.|+.+ ..+.+||..+.. ...+.. ....-..+...++..++.|+.+ ..+.+||....
T Consensus 629 ~g~~latgs~d-------g~I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~D------~~ikiWd~~~~~ 693 (793)
T PLN00181 629 SGRSLAFGSAD-------HKVYYYDLRNPKLPLCTMIG--HSKTVSYVRFVDSSTLVSSSTD------NTLKLWDLSMSI 693 (793)
T ss_pred CCCEEEEEeCC-------CeEEEEECCCCCccceEecC--CCCCEEEEEEeCCCEEEEEECC------CEEEEEeCCCCc
Confidence 46778888775 578999987642 111111 1111112223366666777765 47888887643
Q ss_pred ---ceeecccCc--cCccceeEEEECCEEEEEeecCCcceEEEeCCCC
Q 021759 190 ---TWNLMSDGM--KEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDD 232 (308)
Q Consensus 190 ---~W~~~~~~~--~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~ 232 (308)
.|..+.... .......+...++.+++.|+. ...+.+|+....
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-D~~v~iw~~~~~ 740 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-TNEVFVYHKAFP 740 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-CCEEEEEECCCC
Confidence 232222100 011111223346677777765 567888887644
No 125
>smart00284 OLF Olfactomedin-like domains.
Probab=91.24 E-value=8 Score=32.42 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=88.3
Q ss_pred CCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCC----C--------cceEEEEeCCEEEEEc
Q 021759 53 PQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTP----R--------SFFASGNVNGKIMAVG 120 (308)
Q Consensus 53 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r--------~~~~~~~~~~~iyv~G 120 (308)
..+.|...++.++.+|.-- .....+.+||..+++-.....+|.+ + ...-+++-++-|+|+=
T Consensus 72 ~~~~GtG~VVYngslYY~~-------~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIY 144 (255)
T smart00284 72 HAGQGTGVVVYNGSLYFNK-------FNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIY 144 (255)
T ss_pred CccccccEEEECceEEEEe-------cCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEE
Confidence 3455555555588888863 2346799999999865433333322 1 1234455566777773
Q ss_pred CCCCCCCCCCCeEEEEeCCCC----ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc
Q 021759 121 GTGANINETMTAVECYDPESD----TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD 196 (308)
Q Consensus 121 G~~~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~ 196 (308)
... .+...-.+-+.||.+- +|.. ..+.+..+ .+.++=|.+|++-... .....-.+.||+.+++=..+..
T Consensus 145 at~--~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~-naFmvCGvLY~~~s~~--~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 145 ATE--QNAGKIVISKLNPATLTIENTWIT--TYNKRSAS-NAFMICGILYVTRSLG--SKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred ecc--CCCCCEEEEeeCcccceEEEEEEc--CCCccccc-ccEEEeeEEEEEccCC--CCCcEEEEEEECCCCccceeee
Confidence 321 1112233456777654 5654 23333223 3445557899985422 2223457889999876443333
Q ss_pred CccCccceeE-EEE---CCEEEEEeecCCcceEEEeCC
Q 021759 197 GMKEGWTGIS-IVL---EGKLFVISEHGDCPMKQYNPD 230 (308)
Q Consensus 197 ~~~~~~~~~~-~~~---~~~ly~~gg~~~~~~~~yd~~ 230 (308)
+++.+....+ +-. +.+||+.. ...+..||+.
T Consensus 218 ~f~n~y~~~s~l~YNP~d~~LY~wd---ng~~l~Y~v~ 252 (255)
T smart00284 218 PFENMYEYISMLDYNPNDRKLYAWN---NGHLVHYDIA 252 (255)
T ss_pred eeccccccceeceeCCCCCeEEEEe---CCeEEEEEEE
Confidence 3444433333 322 78899986 3367777754
No 126
>PTZ00420 coronin; Provisional
Probab=91.03 E-value=14 Score=34.98 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=53.5
Q ss_pred CEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEE-EECCEEEEEecccCCCCcCCeEEEEeCCCCcee
Q 021759 114 GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA-VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN 192 (308)
Q Consensus 114 ~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 192 (308)
..+++.||.+ ..+.+||+.+.+=.. .+.....-.++. ..++.+++.++.+ ..+.+||+.+..=.
T Consensus 138 ~~iLaSgS~D-------gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 138 YYIMCSSGFD-------SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEIA 202 (568)
T ss_pred CeEEEEEeCC-------CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecC------CEEEEEECCCCcEE
Confidence 3455667765 568889998764211 111111111222 2378888877755 57999999876421
Q ss_pred -ecccCccCccceeEEE-----ECCEEEEEeecCC---cceEEEeCCC
Q 021759 193 -LMSDGMKEGWTGISIV-----LEGKLFVISEHGD---CPMKQYNPDD 231 (308)
Q Consensus 193 -~~~~~~~~~~~~~~~~-----~~~~ly~~gg~~~---~~~~~yd~~~ 231 (308)
.+.. .........+. .++..++.+|.+. ..+..||+.+
T Consensus 203 ~tl~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 203 SSFHI-HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEec-ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 1111 11111111111 2455566656542 3699999875
No 127
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=90.92 E-value=6.6 Score=34.10 Aligned_cols=107 Identities=9% Similarity=0.071 Sum_probs=66.3
Q ss_pred EEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCC
Q 021759 108 ASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDIN 187 (308)
Q Consensus 108 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 187 (308)
.++-++++..|-...+ +.+-+++..|.+..+ .+...+.+-++.-+.+++.|.|..+ +++-.||.+
T Consensus 324 NvVdfd~kyIVsASgD-------RTikvW~~st~efvR--tl~gHkRGIAClQYr~rlvVSGSSD------ntIRlwdi~ 388 (499)
T KOG0281|consen 324 NVVDFDDKYIVSASGD-------RTIKVWSTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSD------NTIRLWDIE 388 (499)
T ss_pred eeeccccceEEEecCC-------ceEEEEeccceeeeh--hhhcccccceehhccCeEEEecCCC------ceEEEEecc
Confidence 3444567744333222 557777777665443 3555566777778899999887765 789999998
Q ss_pred CCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCC
Q 021759 188 KDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDD 232 (308)
Q Consensus 188 ~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~ 232 (308)
.+..-.+-. ...----++-+|++-.+-|++ ..++.++|+.+.
T Consensus 389 ~G~cLRvLe--GHEeLvRciRFd~krIVSGaY-DGkikvWdl~aa 430 (499)
T KOG0281|consen 389 CGACLRVLE--GHEELVRCIRFDNKRIVSGAY-DGKIKVWDLQAA 430 (499)
T ss_pred ccHHHHHHh--chHHhhhheeecCceeeeccc-cceEEEEecccc
Confidence 886533211 000001146778887788887 456777776543
No 128
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.83 E-value=13 Score=34.00 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=57.4
Q ss_pred CCeEEEEeCCCCceeeCcCCcCcccceeEEEECC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEE
Q 021759 130 MTAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIV 208 (308)
Q Consensus 130 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~ 208 (308)
...++++|..+++-+.+...+.. .......-++ +|++....++ ..+++++|+.++..+.+... ..........
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~s 300 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH-FGIDTEPTWA 300 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC-ccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC-CCCccceEEC
Confidence 46789999988877766544321 1111222344 5654432221 25799999998876655431 1111122233
Q ss_pred ECCE-EEEEeecC-CcceEEEeCCCCceEEec
Q 021759 209 LEGK-LFVISEHG-DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 209 ~~~~-ly~~gg~~-~~~~~~yd~~~~~W~~~~ 238 (308)
-+++ |+...... ...++.+|..+++.+.+.
T Consensus 301 pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 301 PDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 4555 44333222 346899999888887764
No 129
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=90.76 E-value=8.5 Score=31.86 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=67.1
Q ss_pred ceeeCcCCcC-----cccceeEE-EECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEE---CCE
Q 021759 142 TWTTAAKLRM-----GLARYDSA-VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL---EGK 212 (308)
Q Consensus 142 ~W~~~~~~~~-----~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~ 212 (308)
.|+...|+.. |-.+.-.. ...+.|+..||- ..++..|+++++.+..-- ...-+-++++. +++
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~r--GHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYR--GHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEc--CCcceeeeeeecccCcc
Confidence 5777666544 22222222 246889998874 478999999998765421 11122233332 344
Q ss_pred EEEEeecCCcceEEEeCCCCceEEecCC----CCCCccccCCeEEEEeCCEEEEEcCCceE
Q 021759 213 LFVISEHGDCPMKQYNPDDDTWRYVGGD----KFPCEVMHRPFAVNGVEGKIYVVSSGLNV 269 (308)
Q Consensus 213 ly~~gg~~~~~~~~yd~~~~~W~~~~~~----~~~~~~~~~~~~~~~~~~~l~v~gG~~~~ 269 (308)
|+. |+. ...+.++|.++.+-..+-+. ..-++.-..+.++...+...++-||+-+.
T Consensus 171 ils-G~E-DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~l 229 (325)
T KOG0649|consen 171 ILS-GAE-DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKL 229 (325)
T ss_pred eee-cCC-CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCce
Confidence 443 443 56899999999987665431 11112223344666677777777776554
No 130
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.76 E-value=3.7 Score=35.85 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=40.9
Q ss_pred CCEEEEEec---ccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCE--EEEEeecCCcceEEEeCCCCceE
Q 021759 162 GSKMYVTEG---WTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK--LFVISEHGDCPMKQYNPDDDTWR 235 (308)
Q Consensus 162 ~~~iyv~GG---~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~--ly~~gg~~~~~~~~yd~~~~~W~ 235 (308)
.+++||+-- ....+.....+|+||+++.+-...-+ +...-.+..+..+.+ ||.+.+. ...+.+||..+++-.
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~-~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAG-DGTLDVYDAATGKLV 325 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETT-TTEEEEEETTT--EE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCC-CCeEEEEeCcCCcEE
Confidence 578998732 11234456799999999987432221 222222344555666 5544332 457999999998754
No 131
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.59 E-value=13 Score=33.62 Aligned_cols=133 Identities=12% Similarity=0.152 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc--
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT-- 190 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-- 190 (308)
++.++++|-.. +-+...|.....|+.+......+........++.++++|... .+..-+....+
T Consensus 249 dG~~~~vg~~G-------~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d~G~~~~ 314 (398)
T PLN00033 249 DGDYVAVSSRG-------NFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG-------GLYVSKGTGLTEE 314 (398)
T ss_pred CCCEEEEECCc-------cEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc-------eEEEecCCCCccc
Confidence 55666666543 222233443344888754333332222334578888876532 33333333333
Q ss_pred ---eeecccCccC-ccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEecC-CCCCCccccCCeEEE-EeCCEEEEEc
Q 021759 191 ---WNLMSDGMKE-GWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGG-DKFPCEVMHRPFAVN-GVEGKIYVVS 264 (308)
Q Consensus 191 ---W~~~~~~~~~-~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~-~~~~~l~v~g 264 (308)
|.+++..... ........-++.++++|... .+..-...-.+|+.... -+.+ ..-+.+. ..+++.|++|
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G--~v~~s~D~G~tW~~~~~~~~~~----~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG--ILLRSTDGGKSWKRDKGADNIA----ANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEECCC--cEEEeCCCCcceeEccccCCCC----cceeEEEEcCCCceEEEe
Confidence 4444321111 11112233467899988743 56666667789999762 2333 2233554 3458999998
Q ss_pred C
Q 021759 265 S 265 (308)
Q Consensus 265 G 265 (308)
-
T Consensus 389 ~ 389 (398)
T PLN00033 389 N 389 (398)
T ss_pred C
Confidence 5
No 132
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=90.43 E-value=9.1 Score=31.71 Aligned_cols=154 Identities=14% Similarity=0.202 Sum_probs=79.2
Q ss_pred EEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCC----ceeecccCccCccceeE-E
Q 021759 133 VECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD----TWNLMSDGMKEGWTGIS-I 207 (308)
Q Consensus 133 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~~~~~~~-~ 207 (308)
+.......+.|.+-+ +|. ++++|+..+.. ...+..|...++ .|...- ..|..+.+.. +
T Consensus 12 ~~~~~~~~GsWmrDp-l~~----------~~r~~~~~~~~-----~~~l~E~~~~~~~~~~~~~~~~-~lp~~~~gTg~V 74 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRDP-LPA----------DDRIYVMNYFD-----GLMLTEYTNLEDFKRGRKAEKY-RLPYSWDGTGHV 74 (249)
T ss_pred EEeeccccceeecCC-Ccc----------cCceEEecccc-----CceEEEeccHHHhhccCcceEE-eCCCCccccceE
Confidence 344455556775532 221 78899984443 245666655322 232222 2556666655 7
Q ss_pred EECCEEEEEeecCCcceEEEeCCCC---ceEEecCCCCCCcccc--CC---eEEEEeCCEEEEE-cCCceEeEEEeeeec
Q 021759 208 VLEGKLFVISEHGDCPMKQYNPDDD---TWRYVGGDKFPCEVMH--RP---FAVNGVEGKIYVV-SSGLNVAIGRVYEEQ 278 (308)
Q Consensus 208 ~~~~~ly~~gg~~~~~~~~yd~~~~---~W~~~~~~~~~~~~~~--~~---~~~~~~~~~l~v~-gG~~~~~~~~~~~~~ 278 (308)
+++|.+|.-... ...+.+||+++. .|+.++.+........ .+ .-+++..+-|+++ -...+.....+.+
T Consensus 75 VynGs~yynk~~-t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~sk-- 151 (249)
T KOG3545|consen 75 VYNGSLYYNKAG-TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSK-- 151 (249)
T ss_pred EEcceEEeeccC-CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeec--
Confidence 889998887644 668999999884 3555554332211001 11 1123333334444 3333333333344
Q ss_pred CCCc----eeeeE-EecCCCcccccccceeEEeeC
Q 021759 279 NGGI----SAEWK-VMTAPRAFKDLAPSSCQVVYA 308 (308)
Q Consensus 279 ~~~~----~~~W~-~~~~p~~~~~~~~~~~~~~~~ 308 (308)
.|++ ..+|. .++.+....+| ..|.++||
T Consensus 152 Ldp~tl~~e~tW~T~~~k~~~~~aF--~iCGvLY~ 184 (249)
T KOG3545|consen 152 LDPETLEVERTWNTTLPKRSAGNAF--MICGVLYV 184 (249)
T ss_pred cCHHHhheeeeeccccCCCCcCceE--EEeeeeEE
Confidence 5553 34674 34444444444 46777775
No 133
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=90.36 E-value=8 Score=30.94 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=57.0
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCcc---ccCC--CCC--CCcceEEEEe-CCEEEEEcCCCCCCCCCCCeEEE
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQ---LASP--MLT--PRSFFASGNV-NGKIMAVGGTGANINETMTAVEC 135 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~~--~~~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 135 (308)
++++|++-|. ..|+||..+..+. .+.. ++. .....+...- ++++|++.|.. .++
T Consensus 62 ~~~~yfFkg~---------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~---------y~r 123 (194)
T cd00094 62 TGKIYFFKGD---------KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDK---------YWR 123 (194)
T ss_pred CCEEEEECCC---------EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCE---------EEE
Confidence 3889999543 4788887642221 1111 111 2223343333 68999998854 788
Q ss_pred EeCCCCceeeC---------cCCcCcccceeEEEE-CCEEEEEecccCCCCcCCeEEEEeCCCCc
Q 021759 136 YDPESDTWTTA---------AKLRMGLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDT 190 (308)
Q Consensus 136 yd~~t~~W~~~---------~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 190 (308)
||..+++.... +.+|.. --++... ++++|.+-| +..++||..+++
T Consensus 124 y~~~~~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g--------~~y~~~d~~~~~ 178 (194)
T cd00094 124 YDEKTQKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKG--------DQYWRFDPRSKE 178 (194)
T ss_pred EeCCCccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEEC--------CEEEEEeCccce
Confidence 88765543211 112211 1223333 489999988 589999988765
No 134
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=89.81 E-value=5.1 Score=34.75 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=73.9
Q ss_pred eCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeE----EEECCEEEEEecccCCCCcCCeEEEEeCC
Q 021759 112 VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDS----AVMGSKMYVTEGWTWPFMFSPRGGVYDIN 187 (308)
Q Consensus 112 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 187 (308)
+++++.+-|..+ +.+.++|..+++- +. ....|+- ..+.+.+.|....+ .++-++|..
T Consensus 245 yd~rviisGSSD-------sTvrvWDv~tge~-----l~-tlihHceaVLhlrf~ng~mvtcSkD------rsiaVWdm~ 305 (499)
T KOG0281|consen 245 YDERVIVSGSSD-------STVRVWDVNTGEP-----LN-TLIHHCEAVLHLRFSNGYMVTCSKD------RSIAVWDMA 305 (499)
T ss_pred ccceEEEecCCC-------ceEEEEeccCCch-----hh-HHhhhcceeEEEEEeCCEEEEecCC------ceeEEEecc
Confidence 478877777665 6688888877642 11 1122222 23344444544433 467777654
Q ss_pred CCceeecccCccCcccee-EEEECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCC
Q 021759 188 KDTWNLMSDGMKEGWTGI-SIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 266 (308)
Q Consensus 188 ~~~W~~~~~~~~~~~~~~-~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~ 266 (308)
.-+=..+.--+...+... .+-+++| |++...+...+..++..|..+.+. +.-- .++-++..+.|+++|-|..
T Consensus 306 sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRt--l~gH----kRGIAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 306 SPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRT--LNGH----KRGIACLQYRDRLVVSGSS 378 (499)
T ss_pred CchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehh--hhcc----cccceehhccCeEEEecCC
Confidence 432000000011112222 2556777 555544467899999988887543 2223 6677888999999998876
Q ss_pred ce
Q 021759 267 LN 268 (308)
Q Consensus 267 ~~ 268 (308)
++
T Consensus 379 Dn 380 (499)
T KOG0281|consen 379 DN 380 (499)
T ss_pred Cc
Confidence 55
No 135
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=89.67 E-value=6.6 Score=28.98 Aligned_cols=82 Identities=11% Similarity=-0.003 Sum_probs=53.5
Q ss_pred EeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCC---cCcccceeEEEECCEEEEEecccCCCCcCCeEEEEe-C
Q 021759 111 NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL---RMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYD-I 186 (308)
Q Consensus 111 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd-~ 186 (308)
-++|-+|-+.-. .......+..||..+.+|+.+..+ .........+.++|++-++.-........-++++++ .
T Consensus 3 cinGvly~~a~~---~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 3 CINGVLYWLAWS---EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EECcEEEeEEEE---CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 357777766554 233467899999999999887532 334456667888999888755432221224677774 4
Q ss_pred CCCceeecc
Q 021759 187 NKDTWNLMS 195 (308)
Q Consensus 187 ~~~~W~~~~ 195 (308)
....|.+..
T Consensus 80 ~k~~Wsk~~ 88 (129)
T PF08268_consen 80 EKQEWSKKH 88 (129)
T ss_pred ccceEEEEE
Confidence 466898654
No 136
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=89.48 E-value=15 Score=32.90 Aligned_cols=118 Identities=7% Similarity=0.082 Sum_probs=65.7
Q ss_pred ceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEe-CCEEEEEcCCCCCCCCCCCeEE
Q 021759 56 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVE 134 (308)
Q Consensus 56 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 134 (308)
+.++.+..|+.||..|-. -..+-+||..+.. .++..|..-.--....+ ++.-|++=+.+ -..+.
T Consensus 350 ~ts~~fHpDgLifgtgt~-------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad------d~~V~ 414 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP-------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD------DGSVK 414 (506)
T ss_pred eEEeeEcCCceEEeccCC-------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec------CCeEE
Confidence 444444446666666533 3456778888766 55555543333334444 44455554443 13388
Q ss_pred EEeCCCCceeeCcCCcCccc-ceeEEEEC--CEEEEEecccCCCCcCCeEEEEeCCCCceeeccc
Q 021759 135 CYDPESDTWTTAAKLRMGLA-RYDSAVMG--SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD 196 (308)
Q Consensus 135 ~yd~~t~~W~~~~~~~~~r~-~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~ 196 (308)
++|.+..+ .....+.+-. ......+| |+..+++|.+ -.++.|+-.+..|+.+..
T Consensus 415 lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~------l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 415 LWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD------LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecce------eEEEEEecccccceeeeh
Confidence 88987653 2222222211 22333443 6667777743 467777888999999875
No 137
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=89.10 E-value=17 Score=32.78 Aligned_cols=146 Identities=13% Similarity=0.005 Sum_probs=73.5
Q ss_pred CeEEEEeCCCCceeeCcCCcCcccceeEEEECC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEE
Q 021759 131 TAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL 209 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 209 (308)
..++++|+.+++-+.+...+..... ....-++ +|++..... ....++.+|+.++..+.+... ...........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~s~ 287 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNG-PGIDTEPSWSP 287 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCC-CCCCCCEEECC
Confidence 6799999988866655443322222 1222354 465543322 125799999988876666431 11111112223
Q ss_pred CCE-EEEEeecC-CcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeEEEeeeecCCCceeeeE
Q 021759 210 EGK-LFVISEHG-DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWK 287 (308)
Q Consensus 210 ~~~-ly~~gg~~-~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~ 287 (308)
+++ |++..... ...++.+|..+.+++.+.... . .........+++.+++..... ....+.. +|.....++
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~-~----~~~~~~~spdg~~i~~~~~~~-~~~~i~~--~d~~~~~~~ 359 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG-G----YNASPSWSPDGDLIAFVHREG-GGFNIAV--MDLDGGGER 359 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-C----CccCeEECCCCCEEEEEEccC-CceEEEE--EeCCCCCeE
Confidence 554 54443322 347999999988887765211 1 111122334555555543322 1223333 555555555
Q ss_pred Eec
Q 021759 288 VMT 290 (308)
Q Consensus 288 ~~~ 290 (308)
.+.
T Consensus 360 ~l~ 362 (417)
T TIGR02800 360 VLT 362 (417)
T ss_pred Ecc
Confidence 554
No 138
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.02 E-value=23 Score=34.24 Aligned_cols=144 Identities=11% Similarity=0.151 Sum_probs=80.8
Q ss_pred cceEEEEeC--CEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEE
Q 021759 105 SFFASGNVN--GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGG 182 (308)
Q Consensus 105 ~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 182 (308)
..-..++++ |.=..+|+.. +..+.+|+-+++....-..-...+....+..-||.+.+.|+.+ ..+-
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~k------lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD------gKVK 375 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSK------LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED------GKVK 375 (893)
T ss_pred ceeeEEEecccCCEEEEcCCc------cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC------CcEE
Confidence 334444554 6666777653 5678888766555433222222333333344588888888876 5788
Q ss_pred EEeCCCCceeecccCccCccceeE---EEECCEEEEEeecCCcceEEEeCCCCc-eEEecCCCCCCccccCCeEEEEeC-
Q 021759 183 VYDINKDTWNLMSDGMKEGWTGIS---IVLEGKLFVISEHGDCPMKQYNPDDDT-WRYVGGDKFPCEVMHRPFAVNGVE- 257 (308)
Q Consensus 183 ~yd~~~~~W~~~~~~~~~~~~~~~---~~~~~~ly~~gg~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~- 257 (308)
+||..+...... .....++++ +...++..+.... ...+.++|+..-. .+... .|- +..++.+.+|
T Consensus 376 vWn~~SgfC~vT---FteHts~Vt~v~f~~~g~~llssSL-DGtVRAwDlkRYrNfRTft-~P~-----p~QfscvavD~ 445 (893)
T KOG0291|consen 376 VWNTQSGFCFVT---FTEHTSGVTAVQFTARGNVLLSSSL-DGTVRAWDLKRYRNFRTFT-SPE-----PIQFSCVAVDP 445 (893)
T ss_pred EEeccCceEEEE---eccCCCceEEEEEEecCCEEEEeec-CCeEEeeeecccceeeeec-CCC-----ceeeeEEEEcC
Confidence 898877654322 122222222 3345554444332 3478888886543 33332 123 3456666666
Q ss_pred -CEEEEEcCCceEe
Q 021759 258 -GKIYVVSSGLNVA 270 (308)
Q Consensus 258 -~~l~v~gG~~~~~ 270 (308)
|.|++.|+.++..
T Consensus 446 sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 446 SGELVCAGAQDSFE 459 (893)
T ss_pred CCCEEEeeccceEE
Confidence 9999999866643
No 139
>PRK02889 tolB translocation protein TolB; Provisional
Probab=88.85 E-value=18 Score=32.92 Aligned_cols=145 Identities=9% Similarity=0.008 Sum_probs=72.8
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcceEEEEeC-CEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFFASGNVN-GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
..++++|..+++=..+...+.... .....-+ .+|++....+ ...+++.+|..++..+.+..-. .........
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wS 292 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRD-----GNSQIYTVNADGSGLRRLTQSS-GIDTEPFFS 292 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccC-----CCceEEEEECCCCCcEECCCCC-CCCcCeEEc
Confidence 458888888775444443332111 1111124 4555443332 2367899998877666654322 111112223
Q ss_pred ECCE-EEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEE-eecC-CcceEEEeCCCCceEEe
Q 021759 161 MGSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVI-SEHG-DCPMKQYNPDDDTWRYV 237 (308)
Q Consensus 161 ~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~-gg~~-~~~~~~yd~~~~~W~~~ 237 (308)
-+++ |+...... + ...++.+|..++..+.+... ..........-+++..++ .... ...++.+|+.+++.+.+
T Consensus 293 pDG~~l~f~s~~~--g--~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 293 PDGRSIYFTSDRG--G--APQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL 367 (427)
T ss_pred CCCCEEEEEecCC--C--CcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence 3554 54433221 1 24788888877766655421 111112223345553333 3221 24689999998887766
Q ss_pred c
Q 021759 238 G 238 (308)
Q Consensus 238 ~ 238 (308)
.
T Consensus 368 t 368 (427)
T PRK02889 368 T 368 (427)
T ss_pred c
Confidence 4
No 140
>PRK01742 tolB translocation protein TolB; Provisional
Probab=88.56 E-value=19 Score=32.81 Aligned_cols=160 Identities=11% Similarity=0.058 Sum_probs=77.5
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcceEEEE-eCCE-EEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFFASGN-VNGK-IMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA 159 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 159 (308)
..++++|..+++-+.+...+... ..... -+++ |++....+ ...+++.+|..+++.+.+..-... ......
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~--~~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~w 299 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHN--GAPAFSPDGSRLAFASSKD-----GVLNIYVMGANGGTPSQLTSGAGN-NTEPSW 299 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCcc--CceeECCCCCEEEEEEecC-----CcEEEEEEECCCCCeEeeccCCCC-cCCEEE
Confidence 35788888776655554433211 12222 2554 44433222 124688889888776665432211 111122
Q ss_pred EECCE-EEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEec
Q 021759 160 VMGSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 160 ~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~ 238 (308)
.-+++ |+......+ ...++.+|..+..-+.+.. . . ......-+++..++.+. ..+..+|+.+++++.+.
T Consensus 300 SpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~-~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 300 SPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R-G-YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred CCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C-C-CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEec
Confidence 23554 554433221 1367777765543333321 1 1 11223335554444332 46888999999887764
Q ss_pred CCCCCCccccCCeEEEEeCCEEEEEcC
Q 021759 239 GDKFPCEVMHRPFAVNGVEGKIYVVSS 265 (308)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~v~gG 265 (308)
.. .. .......-+++.++++.
T Consensus 370 ~~-~~-----~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 370 ST-FL-----DESPSISPNGIMIIYSS 390 (429)
T ss_pred CC-CC-----CCCceECCCCCEEEEEE
Confidence 21 11 11222445666666654
No 141
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=88.26 E-value=7.3 Score=36.18 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=61.7
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCce
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW 143 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 143 (308)
...||+.|- -+++|++|...++|..-=....+-..+..+.--..++++||.+ ..++.+||.+..-
T Consensus 145 scDly~~gs--------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~-------g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 145 SCDLYLVGS--------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED-------GVVEFWDPRDKSR 209 (703)
T ss_pred CccEEEeec--------CcceEEEEccccccccccccccccceeeeecCccceEEecccC-------ceEEEecchhhhh
Confidence 556888763 2479999999999965332222222222222245688888876 6799999988743
Q ss_pred eeC-------cCCcCcccc--eeEEEE-CCEEEEEecccCCCCcCCeEEEEeCCCCc
Q 021759 144 TTA-------AKLRMGLAR--YDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDT 190 (308)
Q Consensus 144 ~~~-------~~~~~~r~~--~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 190 (308)
... ...|..-.. .++..+ ++-|-+.-|.. ...+++||+.+.+
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-----TGSVLIYDLRASK 261 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeecc-----CCcEEEEEcccCC
Confidence 221 122222122 233334 33555544433 2578999998764
No 142
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=88.09 E-value=14 Score=30.73 Aligned_cols=123 Identities=13% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCeEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEe-cccCCCCcCCeEEEEeCCCCceeeccc-CccCccceeEE
Q 021759 130 MTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTE-GWTWPFMFSPRGGVYDINKDTWNLMSD-GMKEGWTGISI 207 (308)
Q Consensus 130 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~ 207 (308)
...+..+|..|++-...-..+.+.... =+..+|+|..+. | ..+--+|+.+ ...+.. .+|..-.+++.
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSl-Evs~dG~ilTia~g--------ssV~Fwdaks--f~~lKs~k~P~nV~SASL 232 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSL-EVSQDGRILTIAYG--------SSVKFWDAKS--FGLLKSYKMPCNVESASL 232 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcce-eeccCCCEEEEecC--------ceeEEecccc--ccceeeccCccccccccc
Confidence 366888898888643322233332221 123466666652 3 3566666654 223322 24444333334
Q ss_pred EECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEE-EEeCCEEEEEcCCce
Q 021759 208 VLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAV-NGVEGKIYVVSSGLN 268 (308)
Q Consensus 208 ~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~v~gG~~~ 268 (308)
.-+..+||.||. ...++.||..|+. ++...... ...--+++ ..-+|.+|..|..+.
T Consensus 233 ~P~k~~fVaGge-d~~~~kfDy~Tge--Ei~~~nkg--h~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 233 HPKKEFFVAGGE-DFKVYKFDYNTGE--EIGSYNKG--HFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred cCCCceEEecCc-ceEEEEEeccCCc--eeeecccC--CCCceEEEEECCCCceeeccCCCc
Confidence 446679999987 4568888988876 22211111 00122344 456999999997543
No 143
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.96 E-value=22 Score=32.78 Aligned_cols=147 Identities=11% Similarity=0.065 Sum_probs=73.2
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCce
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW 143 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 143 (308)
.+.+++.|+.+ ..+.++|..+.+-.+.-.............-++.+++.+.++ ..+.+||..+..-
T Consensus 257 ~g~~i~Sgs~D-------~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d-------~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 257 DGNLLVSGSDD-------GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD-------GTIRVWDLETGSK 322 (456)
T ss_pred CCCEEEEecCC-------CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC-------ccEEEEECCCCce
Confidence 44667776652 246777887744322221112222222233367788887665 6688999988763
Q ss_pred e---eCcCCcCcccceeEEE--ECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCc-cce-eEE-EECCEEEE
Q 021759 144 T---TAAKLRMGLARYDSAV--MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEG-WTG-ISI-VLEGKLFV 215 (308)
Q Consensus 144 ~---~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~-~~~-~~~~~ly~ 215 (308)
. .+.....+. -...+. -+++.++.+..+ +.+-.||+....-...-...... +.. ..+ ..++++.+
T Consensus 323 ~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d------~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 323 LCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLD------RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred eeeecccCCCCCC-ceeEEEECCCCcEEEEecCC------CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence 2 233333332 122222 244444444433 46777777755322111101111 111 112 33555555
Q ss_pred EeecCCcceEEEeCCCC
Q 021759 216 ISEHGDCPMKQYNPDDD 232 (308)
Q Consensus 216 ~gg~~~~~~~~yd~~~~ 232 (308)
.|.. ...+..||+.+.
T Consensus 396 sg~~-d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 396 SGSE-DGSVYVWDSSSG 411 (456)
T ss_pred EEeC-CceEEEEeCCcc
Confidence 5544 678999999873
No 144
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=87.00 E-value=20 Score=31.38 Aligned_cols=150 Identities=15% Similarity=0.252 Sum_probs=85.4
Q ss_pred CceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEE--eCCEEEEEcCCCCCCCCCCCe
Q 021759 55 AFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGN--VNGKIMAVGGTGANINETMTA 132 (308)
Q Consensus 55 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 132 (308)
-|.++.-+ ++.+.+.||.+ +..+.++..++.| +..++...-.-+.+. +++.+++.|+.+ ..
T Consensus 67 vFavsl~P-~~~l~aTGGgD-------D~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdms-------G~ 129 (399)
T KOG0296|consen 67 VFAVSLHP-NNNLVATGGGD-------DLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMS-------GK 129 (399)
T ss_pred eEEEEeCC-CCceEEecCCC-------ceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCC-------cc
Confidence 35555555 78889999873 2457888888773 333444444444444 478888888886 55
Q ss_pred EEEEeCCCC--ceeeCcCCcCccccee-EEEE-CCEEEEEecccCCCCcCCeEEEEeCCCCceee-cccCccCccceeEE
Q 021759 133 VECYDPESD--TWTTAAKLRMGLARYD-SAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNL-MSDGMKEGWTGISI 207 (308)
Q Consensus 133 ~~~yd~~t~--~W~~~~~~~~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~ 207 (308)
+.++...++ +|.....+. ... +..+ ...|+++|-.+ ..+|+|..-...-.+ ++. ...+-...-+
T Consensus 130 v~v~~~stg~~~~~~~~e~~----dieWl~WHp~a~illAG~~D------GsvWmw~ip~~~~~kv~~G-h~~~ct~G~f 198 (399)
T KOG0296|consen 130 VLVFKVSTGGEQWKLDQEVE----DIEWLKWHPRAHILLAGSTD------GSVWMWQIPSQALCKVMSG-HNSPCTCGEF 198 (399)
T ss_pred EEEEEcccCceEEEeecccC----ceEEEEecccccEEEeecCC------CcEEEEECCCcceeeEecC-CCCCcccccc
Confidence 777777766 454431111 000 0111 34677777655 478888876653222 221 1111111113
Q ss_pred EECCEEEEEeecCCcceEEEeCCCCc
Q 021759 208 VLEGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 208 ~~~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
.-+||..+.|- ....+.+||+.+.+
T Consensus 199 ~pdGKr~~tgy-~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 199 IPDGKRILTGY-DDGTIIVWNPKTGQ 223 (399)
T ss_pred cCCCceEEEEe-cCceEEEEecCCCc
Confidence 44677666553 36689999998875
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=86.81 E-value=20 Score=32.85 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=49.2
Q ss_pred eEEEEeCCCC----ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEE
Q 021759 132 AVECYDPESD----TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISI 207 (308)
Q Consensus 132 ~~~~yd~~t~----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 207 (308)
.+..||.... .|.+.... |-.+-+.+..+..|+|-=|++ ..+..||.....=+..-. ...+....+.
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsA--P~~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~~l~-y~~Plstvaf 258 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSA--PCRGICFSPSNEALLVSVGYD------KKINIYDIRSQASTDRLT-YSHPLSTVAF 258 (673)
T ss_pred eEEEEeccCCCcccchhhhccC--CcCcceecCCccceEEEeccc------ceEEEeecccccccceee-ecCCcceeee
Confidence 3556666443 23333222 223334445588899988887 689999988654322111 2223333333
Q ss_pred EECCEEEEEeecCCcceEEEeCCC
Q 021759 208 VLEGKLFVISEHGDCPMKQYNPDD 231 (308)
Q Consensus 208 ~~~~~ly~~gg~~~~~~~~yd~~~ 231 (308)
.-+|.++++| .....++.||...
T Consensus 259 ~~~G~~L~aG-~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 259 SECGTYLCAG-NSKGELIAYDMRS 281 (673)
T ss_pred cCCceEEEee-cCCceEEEEeccc
Confidence 3345555544 4466888888754
No 146
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=86.48 E-value=27 Score=32.24 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=76.1
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE--CCEEEEEecccCCCCcCCeEEEEeCCCCc
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDT 190 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 190 (308)
++.-.++||.+ ..+++|.+...+-.+...+...|...+.+.+ +++.++.|-.. ..+..||.+++.
T Consensus 454 ~~~~vaVGG~D-------gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~------rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 454 DGSEVAVGGQD-------GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS------RKVVLYDVASRE 520 (603)
T ss_pred CCCEEEEeccc-------ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC------CcEEEEEcccCc
Confidence 67777888876 4588998877655444444445555555554 66666665443 688899987764
Q ss_pred eeecccCccCccceeE-------EEECCEEEEEeecCCcceEEEeCCCCce-EEecCCCCCCccccCCeEEEEeCCEEEE
Q 021759 191 WNLMSDGMKEGWTGIS-------IVLEGKLFVISEHGDCPMKQYNPDDDTW-RYVGGDKFPCEVMHRPFAVNGVEGKIYV 262 (308)
Q Consensus 191 W~~~~~~~~~~~~~~~-------~~~~~~ly~~gg~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~l~v 262 (308)
- ...+|..+. -.-+++++..|.. ...+.+|+.+.-.= ..+.. -.+ ..-..+..+++.=++
T Consensus 521 ~------~~~~w~FHtakI~~~aWsP~n~~vATGSl-Dt~Viiysv~kP~~~i~ikn-AH~----~gVn~v~wlde~tvv 588 (603)
T KOG0318|consen 521 V------KTNRWAFHTAKINCVAWSPNNKLVATGSL-DTNVIIYSVKKPAKHIIIKN-AHL----GGVNSVAWLDESTVV 588 (603)
T ss_pred e------ecceeeeeeeeEEEEEeCCCceEEEeccc-cceEEEEEccChhhheEecc-ccc----cCceeEEEecCceEE
Confidence 3 111222221 2337888888876 56788888764322 22221 111 223455667776666
Q ss_pred EcCCce
Q 021759 263 VSSGLN 268 (308)
Q Consensus 263 ~gG~~~ 268 (308)
-.|.+.
T Consensus 589 SsG~Da 594 (603)
T KOG0318|consen 589 SSGQDA 594 (603)
T ss_pred eccCcc
Confidence 666433
No 147
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=86.15 E-value=11 Score=33.61 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=59.9
Q ss_pred eEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEecCC----CCCCccccCCeEEEE
Q 021759 180 RGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGD----KFPCEVMHRPFAVNG 255 (308)
Q Consensus 180 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~----~~~~~~~~~~~~~~~ 255 (308)
.+..+. .+.|+.+.. ......-.+.++|++|++.- ...++++|.+- +=+++... ... .......-++.
T Consensus 183 ~l~~w~--~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~--~G~l~~i~~~l-~i~~v~~~i~~~~~~-g~~~~~~yLVE 254 (373)
T PLN03215 183 KINYWD--GNVLKALKQ--MGYHFSDIIVHKGQTYALDS--IGIVYWINSDL-EFSRFGTSLDENITD-GCWTGDRRFVE 254 (373)
T ss_pred cEeeec--CCeeeEccC--CCceeeEEEEECCEEEEEcC--CCeEEEEecCC-ceeeecceecccccC-CcccCceeEEE
Confidence 343444 478999863 44445556899999999964 34788887432 11222210 000 00012234667
Q ss_pred eCCEEEEEcCCceE-------------eEEEeeeecCCCceeeeEEecC
Q 021759 256 VEGKIYVVSSGLNV-------------AIGRVYEEQNGGISAEWKVMTA 291 (308)
Q Consensus 256 ~~~~l~v~gG~~~~-------------~~~~~~~~~~~~~~~~W~~~~~ 291 (308)
..|+|+++...... ....+..++.|.+..+|.++..
T Consensus 255 s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~s 303 (373)
T PLN03215 255 CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKT 303 (373)
T ss_pred ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecc
Confidence 78899998874221 1123333557888899998754
No 148
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=86.10 E-value=20 Score=30.50 Aligned_cols=177 Identities=11% Similarity=0.184 Sum_probs=86.3
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCcc---ccC-CCCCCCcceEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQ---LAS-PMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDP 138 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~-~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~ 138 (308)
.+.....||. -+.+-+|+..+..=. ++. .++....+.+++.+ ++.-++.|.-+ ..+-.+|+
T Consensus 108 Sg~~VAcGGL-------dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD-------~TCalWDi 173 (343)
T KOG0286|consen 108 SGNFVACGGL-------DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD-------MTCALWDI 173 (343)
T ss_pred CCCeEEecCc-------CceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC-------ceEEEEEc
Confidence 4444555554 234666776643211 222 24455556666665 43333343332 44667788
Q ss_pred CCCceeeC-cCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEe
Q 021759 139 ESDTWTTA-AKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVIS 217 (308)
Q Consensus 139 ~t~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~g 217 (308)
++.+-... ..-.--.........+.+.||-||.+ .....+|.....-.+.=.-....-......-+|.-++.|
T Consensus 174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD------~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD------KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG 247 (343)
T ss_pred ccceEEEEecCCcccEEEEecCCCCCCeEEecccc------cceeeeeccCcceeEeecccccccceEEEccCCCeeeec
Confidence 87753321 10000000111111278899999987 467788887764432211011111122233355556655
Q ss_pred ecCCcceEEEeCCCCceEEecCCCCCCccccCC--eEEEEeCCEEEEEcC
Q 021759 218 EHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRP--FAVNGVEGKIYVVSS 265 (308)
Q Consensus 218 g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~gG 265 (308)
. +......||+...+= +...... ..-.+ .......|+|++.|.
T Consensus 248 S-DD~tcRlyDlRaD~~--~a~ys~~--~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 248 S-DDATCRLYDLRADQE--LAVYSHD--SIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred C-CCceeEEEeecCCcE--EeeeccC--cccCCceeEEEcccccEEEeee
Confidence 4 356788899887652 2211111 01122 223556899988885
No 149
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=86.06 E-value=13 Score=32.51 Aligned_cols=206 Identities=12% Similarity=0.036 Sum_probs=94.0
Q ss_pred CCEEEEEeccC--CCCCCCCceeEEEeCCCCCcc---ccCCC---C--CCCcceEEEEeCCEEEEEcCCCCCCCCCCCeE
Q 021759 64 QGKLFVLGGMR--SDTETPMQSTIMYRATTNQWQ---LASPM---L--TPRSFFASGNVNGKIMAVGGTGANINETMTAV 133 (308)
Q Consensus 64 ~~~iyv~GG~~--~~~~~~~~~~~~yd~~~~~W~---~~~~~---~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 133 (308)
+..+|+..=+- .......+-+.+||..+.+-. .+|.- . ..+...++..-+..+||. +-.+..++
T Consensus 47 gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~------N~TPa~SV 120 (342)
T PF06433_consen 47 GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ------NFTPATSV 120 (342)
T ss_dssp SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE------EESSSEEE
T ss_pred CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEE------ccCCCCeE
Confidence 55677654211 011134566888999987432 23321 1 111223333335567776 44467889
Q ss_pred EEEeCCCCceeeCcC-------CcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCcc-cee
Q 021759 134 ECYDPESDTWTTAAK-------LRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGW-TGI 205 (308)
Q Consensus 134 ~~yd~~t~~W~~~~~-------~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~-~~~ 205 (308)
-+.|...++....-+ .|.+-.++.+.+-||++..+.=-............||+..+-.-.-+. ..... ...
T Consensus 121 tVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~-~~~~~~~~~ 199 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPA-YSRDGGRLY 199 (342)
T ss_dssp EEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--E-EETTTTEEE
T ss_pred EEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccc-eECCCCeEE
Confidence 999999987643211 233334455555577766653221111122334567666553221111 00111 111
Q ss_pred EEEECCEEEEEeecCC--cceEEEeCCC-----CceEEecCCCCCCccccCCeEEEEeCCEEEEEc---CCceEeEEEee
Q 021759 206 SIVLEGKLFVISEHGD--CPMKQYNPDD-----DTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVS---SGLNVAIGRVY 275 (308)
Q Consensus 206 ~~~~~~~ly~~gg~~~--~~~~~yd~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~g---G~~~~~~~~~~ 275 (308)
...++|++|-+.-... .-...+..-+ ..|+.-+ ....+.-.-.++||++= +..++.....+
T Consensus 200 F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG---------~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 200 FVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG---------WQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp EEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S---------SS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred EEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc---------eeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 2456788887543221 1112222211 2454422 22233334578888763 22233444444
Q ss_pred eecCCCceee
Q 021759 276 EEQNGGISAE 285 (308)
Q Consensus 276 ~~~~~~~~~~ 285 (308)
.|.||..+.+
T Consensus 271 VWv~D~~t~k 280 (342)
T PF06433_consen 271 VWVYDLKTHK 280 (342)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCe
Confidence 5668877554
No 150
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.95 E-value=19 Score=29.94 Aligned_cols=103 Identities=17% Similarity=0.310 Sum_probs=57.7
Q ss_pred EEEEEcCCCCCCCCCCCeEEEEeCCCCceeeC----------------cCCcCcccceeEEEECCEEEEEecccCCCCcC
Q 021759 115 KIMAVGGTGANINETMTAVECYDPESDTWTTA----------------AKLRMGLARYDSAVMGSKMYVTEGWTWPFMFS 178 (308)
Q Consensus 115 ~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~----------------~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 178 (308)
+-++-||++ .+-.++.||- ++|..- |....++...+.+..|+++++.-
T Consensus 176 krlvSgGcD-----n~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt--------- 239 (299)
T KOG1332|consen 176 KRLVSGGCD-----NLVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT--------- 239 (299)
T ss_pred ceeeccCCc-----cceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE---------
Confidence 457888887 2445555554 355332 22334566666666677766642
Q ss_pred CeEEEEeCCCCceeeccc-CccCccceeEEEECCEEEEEeecCCcceEEEeCCC-CceEEecC
Q 021759 179 PRGGVYDINKDTWNLMSD-GMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDD-DTWRYVGG 239 (308)
Q Consensus 179 ~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~-~~W~~~~~ 239 (308)
-+.+.+.|+...- +.+......+-.+-+.++.++|- .+++..|-... ++|..+..
T Consensus 240 -----~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 240 -----KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -----ecCccCcccccccccCCcceEEEEEeccccEEEEecC-CcEEEEEEeCCCCcEEEccc
Confidence 1233456754321 24444444555555666655543 55777777665 49998864
No 151
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=85.89 E-value=23 Score=30.82 Aligned_cols=153 Identities=10% Similarity=0.048 Sum_probs=70.0
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCC-CCCccccCCCCCCCcceEEEEe-CC-EEEEEcCCCCCCCCCCCeEEEEeCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRAT-TNQWQLASPMLTPRSFFASGNV-NG-KIMAVGGTGANINETMTAVECYDPES 140 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~t 140 (308)
+..||+.+.. ...+..|+.. .++++.+...+.+..-+.++.. ++ .+|+..-. .+.+.+||..+
T Consensus 46 ~~~lyv~~~~-------~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~-------~~~v~v~~~~~ 111 (330)
T PRK11028 46 KRHLYVGVRP-------EFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN-------ANCVSVSPLDK 111 (330)
T ss_pred CCEEEEEECC-------CCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC-------CCeEEEEEECC
Confidence 3456775432 2345666664 4566555443332222223322 34 56665322 25677887754
Q ss_pred Cc-e-eeCcCCcCcccceeEEEE-C-CEEEEEecccCCCCcCCeEEEEeCCCC-ceeec-----ccCccCccceeEEEEC
Q 021759 141 DT-W-TTAAKLRMGLARYDSAVM-G-SKMYVTEGWTWPFMFSPRGGVYDINKD-TWNLM-----SDGMKEGWTGISIVLE 210 (308)
Q Consensus 141 ~~-W-~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~-----~~~~~~~~~~~~~~~~ 210 (308)
+. . +.+...+....-|.++.. + ..+|+..-.. +.+.+||..++ ..... ..+......+....-+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~------~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE------DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC------CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCC
Confidence 31 1 122222222222333333 4 4566654322 68999998763 22211 0011111112222234
Q ss_pred C-EEEEEeecCCcceEEEeCC--CCceEEe
Q 021759 211 G-KLFVISEHGDCPMKQYNPD--DDTWRYV 237 (308)
Q Consensus 211 ~-~ly~~gg~~~~~~~~yd~~--~~~W~~~ 237 (308)
+ .+|+.... .+.+.+||.+ +++.+.+
T Consensus 186 g~~lyv~~~~-~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 186 QQYAYCVNEL-NSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCEEEEEecC-CCEEEEEEEeCCCCCEEEE
Confidence 3 46776542 5677777775 4565444
No 152
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=85.89 E-value=25 Score=31.38 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=72.3
Q ss_pred CceeEEEeCCCCC-ccccCCCCCCCcceEEEEe---CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccce
Q 021759 81 MQSTIMYRATTNQ-WQLASPMLTPRSFFASGNV---NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARY 156 (308)
Q Consensus 81 ~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~ 156 (308)
.+.+.+.|..+++ -.+++.. ...|....+ +..+|+.+. + ..+.++|+.+++ .+...+......
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~r-d-------g~vsviD~~~~~--~v~~i~~G~~~~ 81 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANR-D-------GTVSVIDLATGK--VVATIKVGGNPR 81 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEET-T-------SEEEEEETTSSS--EEEEEE-SSEEE
T ss_pred CCEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcC-C-------CeEEEEECCccc--EEEEEecCCCcc
Confidence 4578889988764 2333332 222544433 456888853 3 468999998886 444445554444
Q ss_pred eEEE-ECCEEEEEecccCCCCcCCeEEEEeCCCCce-eecccC-c----cCccceeE-EEECCEEEEEeecCCcceEEEe
Q 021759 157 DSAV-MGSKMYVTEGWTWPFMFSPRGGVYDINKDTW-NLMSDG-M----KEGWTGIS-IVLEGKLFVISEHGDCPMKQYN 228 (308)
Q Consensus 157 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~-~----~~~~~~~~-~~~~~~ly~~gg~~~~~~~~yd 228 (308)
..+. .+|+..+++.+.. +.+.++|.++.+= +.++.. . +..+.... ....+..|++.-.+...++..|
T Consensus 82 ~i~~s~DG~~~~v~n~~~-----~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEP-----GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEE--TTTEEEEEEEET-----TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred eEEEcCCCCEEEEEecCC-----CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 4443 4666555554432 6899999888653 223220 1 12222222 3346666777766667899998
Q ss_pred CCCC
Q 021759 229 PDDD 232 (308)
Q Consensus 229 ~~~~ 232 (308)
....
T Consensus 157 y~d~ 160 (369)
T PF02239_consen 157 YSDP 160 (369)
T ss_dssp TTTS
T ss_pred eccc
Confidence 7654
No 153
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.06 E-value=21 Score=31.59 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=74.9
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCC--CccccC--C----CCCCCcceEEEEeCC---EEEEEcCCCCCCCCCCCe
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTN--QWQLAS--P----MLTPRSFFASGNVNG---KIMAVGGTGANINETMTA 132 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~--~----~~~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~~ 132 (308)
...|+.+||. ...+.+.+||.+.. .|+--. . |..|-+.-.+..+.+ .-++.+- ....
T Consensus 160 ~p~Iva~GGk-----e~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-------~~hq 227 (412)
T KOG3881|consen 160 DPYIVATGGK-----ENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-------RYHQ 227 (412)
T ss_pred CCceEecCch-----hcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-------ccee
Confidence 3467777887 33455666666554 464322 1 223434334444433 2233222 2467
Q ss_pred EEEEeCCCCceeeCcC---CcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccce---eE
Q 021759 133 VECYDPESDTWTTAAK---LRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTG---IS 206 (308)
Q Consensus 133 ~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~---~~ 206 (308)
+-.||++.+. +.+.. +-.+....+...-++.||+ |-. ...+..||..++.---.. ..+..+ ..
T Consensus 228 vR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~-gn~------~g~l~~FD~r~~kl~g~~---~kg~tGsirsi 296 (412)
T KOG3881|consen 228 VRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYT-GNT------KGQLAKFDLRGGKLLGCG---LKGITGSIRSI 296 (412)
T ss_pred EEEecCcccC-cceeEeccccCcceeeeecCCCcEEEE-ecc------cchhheecccCceeeccc---cCCccCCcceE
Confidence 8899998653 33322 2223333333333555665 322 257888998887532111 111111 12
Q ss_pred EEECC-EEEEEeecCCcceEEEeCCCCc
Q 021759 207 IVLEG-KLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 207 ~~~~~-~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
.++.+ ++...+|. ...+.+||.++++
T Consensus 297 h~hp~~~~las~GL-DRyvRIhD~ktrk 323 (412)
T KOG3881|consen 297 HCHPTHPVLASCGL-DRYVRIHDIKTRK 323 (412)
T ss_pred EEcCCCceEEeecc-ceeEEEeecccch
Confidence 33444 57777776 5678999998854
No 154
>PTZ00420 coronin; Provisional
Probab=84.17 E-value=39 Score=32.13 Aligned_cols=152 Identities=11% Similarity=0.176 Sum_probs=73.5
Q ss_pred EEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEE-eCCEEEEEcCCCCCCCCCCCeEEEEeCCCCcee
Q 021759 66 KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGN-VNGKIMAVGGTGANINETMTAVECYDPESDTWT 144 (308)
Q Consensus 66 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~ 144 (308)
.+++.||.+ ..+.+||..+++= +..+..+..-.++.. .++.+++.++.+ ..+.+||+.+++-.
T Consensus 139 ~iLaSgS~D-------gtIrIWDl~tg~~--~~~i~~~~~V~SlswspdG~lLat~s~D-------~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 139 YIMCSSGFD-------SFVNIWDIENEKR--AFQINMPKKLSSLKWNIKGNLLSGTCVG-------KHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEEeCC-------CeEEEEECCCCcE--EEEEecCCcEEEEEECCCCCEEEEEecC-------CEEEEEECCCCcEE
Confidence 455556552 2467788876541 111111111122222 267888777765 56899999876422
Q ss_pred eCcCCcC--cccceeEEE-----ECCEEEEEecccCCCCcCCeEEEEeCCC-CceeecccCccCccceeEEEE---CCEE
Q 021759 145 TAAKLRM--GLARYDSAV-----MGSKMYVTEGWTWPFMFSPRGGVYDINK-DTWNLMSDGMKEGWTGISIVL---EGKL 213 (308)
Q Consensus 145 ~~~~~~~--~r~~~~~~~-----~~~~iyv~GG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~~~~---~~~l 213 (308)
..+.. ......++. .++..++.+|.+. ...+.+.+||+.. ..-..... ............ ++.+
T Consensus 203 --~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~--~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 203 --SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK--NNMREMKLWDLKNTTSALVTMS-IDNASAPLIPHYDESTGLI 277 (568)
T ss_pred --EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC--CCccEEEEEECCCCCCceEEEE-ecCCccceEEeeeCCCCCE
Confidence 11111 100111111 2445555556542 2224789999874 22111000 111111111122 4778
Q ss_pred EEEeecCCcceEEEeCCCCceEEecC
Q 021759 214 FVISEHGDCPMKQYNPDDDTWRYVGG 239 (308)
Q Consensus 214 y~~gg~~~~~~~~yd~~~~~W~~~~~ 239 (308)
|+.|.. ...+..|+...+.-..+..
T Consensus 278 ~lsGkG-D~tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 278 YLIGKG-DGNCRYYQHSLGSIRKVNE 302 (568)
T ss_pred EEEEEC-CCeEEEEEccCCcEEeecc
Confidence 877743 5688999987776555543
No 155
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=84.05 E-value=23 Score=29.47 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE--ECCEEEEEecccCCCCcCCeEEEEeCCCCc
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV--MGSKMYVTEGWTWPFMFSPRGGVYDINKDT 190 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 190 (308)
+++.++.+|. ..+.+||..++.=..+...--.+.+-+++- .+|+...-||.+ ..+-++|...-.
T Consensus 51 dk~~LAaa~~--------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD------gt~kIWdlR~~~ 116 (311)
T KOG0315|consen 51 DKKDLAAAGN--------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED------GTVKIWDLRSLS 116 (311)
T ss_pred CcchhhhccC--------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC------ceEEEEeccCcc
Confidence 5556666665 458899998874221211112233434433 488988888876 477788877633
Q ss_pred eeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEe
Q 021759 191 WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYV 237 (308)
Q Consensus 191 W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~ 237 (308)
-.+.-. .. ......+..-++--++-|.....|+++|+.++..+..
T Consensus 117 ~qR~~~-~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 117 CQRNYQ-HN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred cchhcc-CC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 222111 11 1111123333333333344467899999999987654
No 156
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=83.17 E-value=28 Score=29.61 Aligned_cols=197 Identities=10% Similarity=0.067 Sum_probs=96.3
Q ss_pred cCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCC
Q 021759 62 PRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPES 140 (308)
Q Consensus 62 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t 140 (308)
...++.+++|++. .+..=|-.-++|.+.-. +..|+.+..+.+ +.+=++.|-- +.++.-+-.-
T Consensus 52 ~~g~~gwlVg~rg--------tiletdd~g~tw~qal~-~~gr~~f~sv~f~~~egw~vGe~--------sqll~T~DgG 114 (339)
T COG4447 52 ESGSHGWLVGGRG--------TILETDDGGITWAQALD-FLGRHAFHSVSFLGMEGWIVGEP--------SQLLHTTDGG 114 (339)
T ss_pred ecCcceEEEcCcc--------eEEEecCCcccchhhhc-hhhhhheeeeeeecccccccCCc--------ceEEEecCCC
Confidence 3378899999872 23444556678988764 344665555544 4444444322 3344444455
Q ss_pred CceeeCcCCcC-cccceeEEEE-CCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccC--ccceeEEEECCEEEEE
Q 021759 141 DTWTTAAKLRM-GLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKE--GWTGISIVLEGKLFVI 216 (308)
Q Consensus 141 ~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--~~~~~~~~~~~~ly~~ 216 (308)
++|.+++--.. +-.-...... +.+-+++|-+ ..++.-+-.-+.|+.+...... .......+.+|++.++
T Consensus 115 qsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~-------Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaV 187 (339)
T COG4447 115 QSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQ-------GAILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAV 187 (339)
T ss_pred cchhhchhhcCCCCCcceeEEecchhhhhhccc-------ceEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEE
Confidence 68988862211 1112223333 3344444432 1344444445679877642221 1112224567777777
Q ss_pred eecCCcceEEEeCCCCceEEecCCCCCCccccCCeEE-EEeCC--EEEEEcCCceEeEEEeeeecCCCceeeeEEecCCC
Q 021759 217 SEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAV-NGVEG--KIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTAPR 293 (308)
Q Consensus 217 gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~--~l~v~gG~~~~~~~~~~~~~~~~~~~~W~~~~~p~ 293 (308)
|-.. .-....+.-...|..-.. .+.++--++ ...++ -++..||...-. ..++..++|+.++.|.
T Consensus 188 g~rG-s~f~T~~aGqt~~~~~g~-----~s~~~letmg~adag~~g~la~g~qg~~f-------~~~~~gD~wsd~~~~~ 254 (339)
T COG4447 188 GARG-SFFSTWGAGQTVWLPHGR-----NSSRRLETMGLADAGSKGLLARGGQGDQF-------SWVCGGDEWSDQGEPV 254 (339)
T ss_pred ecCc-ceEecCCCCccEEeccCC-----CccchhcccccccCCccceEEEcccccee-------ecCCCcccccccccch
Confidence 7543 222223333333433321 111222222 33444 467777642211 1455567888776654
Q ss_pred cc
Q 021759 294 AF 295 (308)
Q Consensus 294 ~~ 295 (308)
..
T Consensus 255 ~~ 256 (339)
T COG4447 255 NL 256 (339)
T ss_pred hc
Confidence 33
No 157
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=83.14 E-value=26 Score=29.25 Aligned_cols=146 Identities=10% Similarity=0.085 Sum_probs=79.3
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEe--CCEEEEEcCCCCCCCCCCCeEEEEeCCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESD 141 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 141 (308)
+++....+|. ..+-.||..++.=..+...-.++..-+++.+ +|+-...||.+ ..+-++|.+.-
T Consensus 51 dk~~LAaa~~--------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------gt~kIWdlR~~ 115 (311)
T KOG0315|consen 51 DKKDLAAAGN--------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------GTVKIWDLRSL 115 (311)
T ss_pred CcchhhhccC--------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------ceEEEEeccCc
Confidence 5555555554 4578899988764444444445556666665 68877778876 44667777653
Q ss_pred ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc-CccCccceeEEEECCEEEEEeecC
Q 021759 142 TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD-GMKEGWTGISIVLEGKLFVISEHG 220 (308)
Q Consensus 142 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~ly~~gg~~ 220 (308)
.-++.=..+.+...-..-..+..+++ |-.+ ..|.++|+.++....... .......+.++.-+++..+.. .+
T Consensus 116 ~~qR~~~~~spVn~vvlhpnQteLis-~dqs------g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~-nn 187 (311)
T KOG0315|consen 116 SCQRNYQHNSPVNTVVLHPNQTELIS-GDQS------GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA-NN 187 (311)
T ss_pred ccchhccCCCCcceEEecCCcceEEe-ecCC------CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe-cC
Confidence 33322222222111111112455554 3322 579999999997754432 122222333344566655443 33
Q ss_pred CcceEEEeCCCC
Q 021759 221 DCPMKQYNPDDD 232 (308)
Q Consensus 221 ~~~~~~yd~~~~ 232 (308)
....++++.-+.
T Consensus 188 kG~cyvW~l~~~ 199 (311)
T KOG0315|consen 188 KGNCYVWRLLNH 199 (311)
T ss_pred CccEEEEEccCC
Confidence 557777777654
No 158
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=82.76 E-value=30 Score=29.68 Aligned_cols=123 Identities=13% Similarity=0.182 Sum_probs=68.8
Q ss_pred ceeEEEeCCCCCccccCCCCCC-CcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTP-RSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
..+-.+|..+++-..+.....| |..|-+-..+-.+++.|..+ ..+-.+|++... .+..+..|-..+++-+
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD-------KTlKfWD~R~~~--pv~t~~LPeRvYa~Dv 164 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD-------KTLKFWDTRSSN--PVATLQLPERVYAADV 164 (347)
T ss_pred CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccc-------cceeecccCCCC--eeeeeeccceeeehhc
Confidence 3567899999877776643322 33333333344567777776 456666765432 2322222222222222
Q ss_pred ECCEEEEEecccCCCCcCCeEEEEeCCCC--ceeecccCccCccceeEEEECCEEEEEeecC
Q 021759 161 MGSKMYVTEGWTWPFMFSPRGGVYDINKD--TWNLMSDGMKEGWTGISIVLEGKLFVISEHG 220 (308)
Q Consensus 161 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~ 220 (308)
... +.|++--+ +.+.+|+++.. ....+.+++.....+.++..++..|++|+..
T Consensus 165 ~~p-m~vVata~------r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 165 LYP-MAVVATAE------RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred cCc-eeEEEecC------CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 222 33333222 57889998654 3555665555555566677788888998774
No 159
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.63 E-value=30 Score=29.67 Aligned_cols=138 Identities=11% Similarity=0.019 Sum_probs=79.6
Q ss_pred CceeEEEeCCCCC----ccccCCCCCCCcceEE-E---EeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCc
Q 021759 81 MQSTIMYRATTNQ----WQLASPMLTPRSFFAS-G---NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG 152 (308)
Q Consensus 81 ~~~~~~yd~~~~~----W~~~~~~~~~r~~~~~-~---~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 152 (308)
.+.+..||...++ |++--.-+..-++-.. . .+++++|+.-+-. ...--++..|.+++.-+++..-|..
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DG----h~nLGvy~ldr~~g~~~~L~~~ps~ 152 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADG----HANLGVYSLDRRTGKAEKLSSNPSL 152 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCC----cceeeeEEEcccCCceeeccCCCCc
Confidence 4678899988775 6554332222111111 1 1367888774432 1234477888888887877665554
Q ss_pred ccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCce--eeccc-------CccCccceeEEEECCEEEEEeecCCcc
Q 021759 153 LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTW--NLMSD-------GMKEGWTGISIVLEGKLFVISEHGDCP 223 (308)
Q Consensus 153 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W--~~~~~-------~~~~~~~~~~~~~~~~ly~~gg~~~~~ 223 (308)
-.+.++|...|-+ .+ -..-.+.+++||+.+++| +..+. +...+..+.++...+++|.|=+- .
T Consensus 153 ---KG~~~~D~a~F~i--~~-~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG---G 223 (339)
T PF09910_consen 153 ---KGTLVHDYACFGI--NN-FHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG---G 223 (339)
T ss_pred ---CceEeeeeEEEec--cc-cccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec---c
Confidence 2234455555544 21 122346899999999999 44432 11223334557778888776422 5
Q ss_pred eEEEeCCC
Q 021759 224 MKQYNPDD 231 (308)
Q Consensus 224 ~~~yd~~~ 231 (308)
+.+.||..
T Consensus 224 i~vgnP~~ 231 (339)
T PF09910_consen 224 IFVGNPYN 231 (339)
T ss_pred EEEeCCCC
Confidence 78888873
No 160
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.50 E-value=41 Score=31.14 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=73.6
Q ss_pred CcceEEEEe--CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcC-cccceeEEEECCEEEEEecccCCCCcCCe
Q 021759 104 RSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRM-GLARYDSAVMGSKMYVTEGWTWPFMFSPR 180 (308)
Q Consensus 104 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 180 (308)
+...+.+.+ +|..+++|-.+ ..+++||..+++ .+..+.. .....++..-++.+...|..+ ..
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~-------g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~~~lssGsr~------~~ 281 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSD-------GTVQIWDVKEQK--KTRTLRGSHASRVGSLAWNSSVLSSGSRD------GK 281 (484)
T ss_pred CCceEEEEECCCCCEEEEeecC-------CeEEEEehhhcc--ccccccCCcCceeEEEeccCceEEEecCC------Cc
Confidence 444555554 57777777664 668999987763 3333333 222333444578888888876 46
Q ss_pred EEEEeCCCCceeecccCccCccceeE---EEECCEEEEEeecCCcceEEEeCCCCceEE-ecCCCCCCccccCCeEEEEe
Q 021759 181 GGVYDINKDTWNLMSDGMKEGWTGIS---IVLEGKLFVISEHGDCPMKQYNPDDDTWRY-VGGDKFPCEVMHRPFAVNGV 256 (308)
Q Consensus 181 ~~~yd~~~~~W~~~~~~~~~~~~~~~---~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~ 256 (308)
+..+|.....=. +.. +.......+ ...+++.+.-||- .+.+.+||.....+.. +.+ .. ......+-+-.
T Consensus 282 I~~~dvR~~~~~-~~~-~~~H~qeVCgLkws~d~~~lASGgn-DN~~~Iwd~~~~~p~~~~~~--H~--aAVKA~awcP~ 354 (484)
T KOG0305|consen 282 ILNHDVRISQHV-VST-LQGHRQEVCGLKWSPDGNQLASGGN-DNVVFIWDGLSPEPKFTFTE--HT--AAVKALAWCPW 354 (484)
T ss_pred EEEEEEecchhh-hhh-hhcccceeeeeEECCCCCeeccCCC-ccceEeccCCCccccEEEec--cc--eeeeEeeeCCC
Confidence 777776543210 000 111111111 2335666665654 6788999883333211 110 11 00111111234
Q ss_pred CCEEEEEcCCceE
Q 021759 257 EGKIYVVSSGLNV 269 (308)
Q Consensus 257 ~~~l~v~gG~~~~ 269 (308)
...|+..||+...
T Consensus 355 q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 355 QSGLLATGGGSAD 367 (484)
T ss_pred ccCceEEcCCCcc
Confidence 6678888887653
No 161
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.41 E-value=60 Score=32.92 Aligned_cols=117 Identities=11% Similarity=0.064 Sum_probs=72.4
Q ss_pred CeEEEEeCCCC--ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc-CccCccceeEE
Q 021759 131 TAVECYDPESD--TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD-GMKEGWTGISI 207 (308)
Q Consensus 131 ~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~ 207 (308)
..++.|+...+ +-+.+..-..+-.-++.+.+++++++--| +.+.+||...++--.... ...+.+.....
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG--------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iq 983 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVG--------RFLRLYDLGKKKLLRKCELKFIPNRISSIQ 983 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecc--------cEEEEeeCChHHHHhhhhhccCceEEEEEe
Confidence 34677776543 33444443444444556667786665444 689999998776432221 12223333345
Q ss_pred EECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCE
Q 021759 208 VLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGK 259 (308)
Q Consensus 208 ~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (308)
....+|++-.-+..-.+++|+++.|+......-+.| |.-.++...|..
T Consensus 984 t~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~p----R~Vt~~~~lD~~ 1031 (1205)
T KOG1898|consen 984 TYGARIVVGDIQESVHFVRYRREDNQLIVFADDPVP----RHVTALELLDYD 1031 (1205)
T ss_pred ecceEEEEeeccceEEEEEEecCCCeEEEEeCCCcc----ceeeEEEEecCC
Confidence 667778776655556788999999999999887888 665665555443
No 162
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=82.40 E-value=33 Score=29.97 Aligned_cols=162 Identities=14% Similarity=0.169 Sum_probs=86.7
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcc--eEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSF--FASGNVNGKIMAVGGTGANINETMTAVECYDPESD 141 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 141 (308)
...+|++..... ..--..+.+|+..++.+.+...+.+-.. |.++.-+++..+..-+. ...+.+|-..++
T Consensus 51 ~~~LY~v~~~~~---~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~------~g~v~v~p~~~d 121 (346)
T COG2706 51 QRHLYVVNEPGE---EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH------SGSVSVYPLQAD 121 (346)
T ss_pred CCEEEEEEecCC---cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc------CceEEEEEcccC
Confidence 447888865421 2233457788888888777764444333 33333345544444443 456677766553
Q ss_pred --ceee------CcCCcCccc-----ceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc-CccCcc-ceeE
Q 021759 142 --TWTT------AAKLRMGLA-----RYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD-GMKEGW-TGIS 206 (308)
Q Consensus 142 --~W~~------~~~~~~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~-~~~~ 206 (308)
-|.. ...-|.+|. .++-..-++++.++-- .-.+.+..|+...+.-+.... ..+++. -.+.
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-----LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD-----LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-----cCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 1221 123344552 2222334564444321 123689999998777655443 111111 1123
Q ss_pred EEE-CCE-EEEEeecC-CcceEEEeCCCCceEEecC
Q 021759 207 IVL-EGK-LFVISEHG-DCPMKQYNPDDDTWRYVGG 239 (308)
Q Consensus 207 ~~~-~~~-ly~~gg~~-~~~~~~yd~~~~~W~~~~~ 239 (308)
++. +++ .|++...+ .-.++.||....+.+.+..
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 333 444 78887654 3467788888788887765
No 163
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=82.15 E-value=31 Score=29.52 Aligned_cols=131 Identities=12% Similarity=0.122 Sum_probs=66.7
Q ss_pred eeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEEC
Q 021759 83 STIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMG 162 (308)
Q Consensus 83 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 162 (308)
.+-+||.++..=..+...-.+-.+-.-. .....+|.||++ ..+..+|+....-. .....+..-+++.+ .
T Consensus 76 ~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~~~vIsgsWD-------~~ik~wD~R~~~~~--~~~d~~kkVy~~~v-~ 144 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEVGCVISGSWD-------KTIKFWDPRNKVVV--GTFDQGKKVYCMDV-S 144 (323)
T ss_pred eEEEEEecCCcceeeccCCCceEEEEee-ccCCeEEEcccC-------ccEEEEeccccccc--cccccCceEEEEec-c
Confidence 4778999887655555432221111111 244567889997 67889999863211 11112222333333 4
Q ss_pred CEEEEEecccCCCCcCCeEEEEeCCCCce--eecccCccCccceeEEEECCEEEEEeecC-CcceEEEeCC
Q 021759 163 SKMYVTEGWTWPFMFSPRGGVYDINKDTW--NLMSDGMKEGWTGISIVLEGKLFVISEHG-DCPMKQYNPD 230 (308)
Q Consensus 163 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~~~ly~~gg~~-~~~~~~yd~~ 230 (308)
+.+.|+|+.+ ..+..||+.+..= +.-.+.+.-.....+++-++.=|+++-.+ .-.++-+|+.
T Consensus 145 g~~LvVg~~~------r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 145 GNRLVVGTSD------RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred CCEEEEeecC------ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc
Confidence 4455666655 6899999987642 11121111112222233355566666443 2244555554
No 164
>PRK03629 tolB translocation protein TolB; Provisional
Probab=81.57 E-value=42 Score=30.62 Aligned_cols=102 Identities=13% Similarity=0.017 Sum_probs=55.4
Q ss_pred CeEEEEeCCCCceeeCcCCcCcccceeEEEECC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEE
Q 021759 131 TAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL 209 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 209 (308)
..++++|..+++-+.+...+..... ....-++ +|++..... + ...++++|..++..+.+... ..........-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~--g--~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wSP 296 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKT--G--SLNLYVMDLASGQIRQVTDG-RSNNTEPTWFP 296 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCC--C--CcEEEEEECCCCCEEEccCC-CCCcCceEECC
Confidence 5688999988876666544332111 1222355 455543321 1 13699999998877766431 11111222333
Q ss_pred CCE-EEEEeecC-CcceEEEeCCCCceEEec
Q 021759 210 EGK-LFVISEHG-DCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 210 ~~~-ly~~gg~~-~~~~~~yd~~~~~W~~~~ 238 (308)
+++ |+...... ...++.+|+++++-+.+.
T Consensus 297 DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 297 DSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 555 43333221 347888899888766664
No 165
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=79.99 E-value=44 Score=29.85 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=72.1
Q ss_pred CCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCC-----cCc--ccceeEEEECC
Q 021759 91 TNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL-----RMG--LARYDSAVMGS 163 (308)
Q Consensus 91 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~--r~~~~~~~~~~ 163 (308)
.+.|+.+.. .....--++.++|++|++.-. ..++.++..-+ -.++.+. ... ....-.+...|
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~~--------G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~G 257 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDSI--------GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCG 257 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcCC--------CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECC
Confidence 478999874 233355677889999998322 33566663221 1222211 111 12233556678
Q ss_pred EEEEEecccCCC-----------CcCC--eEEEEeCCCCceeecccCccCc-----cceeEE-------EECCEEEEEee
Q 021759 164 KMYVTEGWTWPF-----------MFSP--RGGVYDINKDTWNLMSDGMKEG-----WTGISI-------VLEGKLFVISE 218 (308)
Q Consensus 164 ~iyv~GG~~~~~-----------~~~~--~~~~yd~~~~~W~~~~~~~~~~-----~~~~~~-------~~~~~ly~~gg 218 (308)
+++++....... ..+. .++..|.+..+|.++....... ..+.++ ..+|.||....
T Consensus 258 dLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd 337 (373)
T PLN03215 258 ELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED 337 (373)
T ss_pred EEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC
Confidence 899998753211 1122 3445577788999988622111 011111 12577888763
Q ss_pred cCCcceEEEeCCCCceEEe
Q 021759 219 HGDCPMKQYNPDDDTWRYV 237 (308)
Q Consensus 219 ~~~~~~~~yd~~~~~W~~~ 237 (308)
. ...+||.+.++=+.+
T Consensus 338 ~---~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 338 T---MPKVFKLDNGNGSSI 353 (373)
T ss_pred C---cceEEECCCCCccce
Confidence 3 566888877764333
No 166
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=79.37 E-value=59 Score=30.99 Aligned_cols=162 Identities=10% Similarity=0.183 Sum_probs=89.9
Q ss_pred CCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCC-CccccCCCCCCCcceEEEE--e-CCEEEEEcCCCCCCCC
Q 021759 53 PQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTN-QWQLASPMLTPRSFFASGN--V-NGKIMAVGGTGANINE 128 (308)
Q Consensus 53 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~--~-~~~iyv~GG~~~~~~~ 128 (308)
...+.++++..++.+..+|-.. .-.++.+.+..+ +-..+..+|..+-..+... . ++++++.. .
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~~------~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-~------ 448 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTVS------RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS-K------ 448 (691)
T ss_pred ccceeeeccCCCCCEEEEeecc------ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-c------
Confidence 3445555555577777775321 123444444333 4456667777765444433 2 56777764 2
Q ss_pred CCCeEEEEeCCCCceeeCcCCcCc-----ccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccc
Q 021759 129 TMTAVECYDPESDTWTTAAKLRMG-----LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWT 203 (308)
Q Consensus 129 ~~~~~~~yd~~t~~W~~~~~~~~~-----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~ 203 (308)
...+++.++..+-+-+++.+.... .........++.|-++++. ..+++|++++.+-..+.+.++ ..
T Consensus 449 ~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~-------g~I~v~nl~~~~~~~l~~rln--~~ 519 (691)
T KOG2048|consen 449 NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR-------GQIFVYNLETLESHLLKVRLN--ID 519 (691)
T ss_pred ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc-------ceEEEEEcccceeecchhccC--cc
Confidence 246678888877777665433221 1122222347788888764 489999999987665553222 22
Q ss_pred eeEE----EECCEEEEEeecCCcceEEEeCCCC---ceEEec
Q 021759 204 GISI----VLEGKLFVISEHGDCPMKQYNPDDD---TWRYVG 238 (308)
Q Consensus 204 ~~~~----~~~~~ly~~gg~~~~~~~~yd~~~~---~W~~~~ 238 (308)
..++ ...+.|.+.-- .+.++.||.+.. +|..-.
T Consensus 520 vTa~~~~~~~~~~lvvats--~nQv~efdi~~~~l~~ws~~n 559 (691)
T KOG2048|consen 520 VTAAAFSPFVRNRLVVATS--NNQVFEFDIEARNLTRWSKNN 559 (691)
T ss_pred eeeeeccccccCcEEEEec--CCeEEEEecchhhhhhhhhcc
Confidence 2221 22455665543 568888888543 455443
No 167
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.83 E-value=30 Score=32.39 Aligned_cols=104 Identities=8% Similarity=0.066 Sum_probs=58.3
Q ss_pred CEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE--CCEEEEEecccCCCCcCCeEEEEeCCCCce
Q 021759 114 GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDTW 191 (308)
Q Consensus 114 ~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 191 (308)
-.||+.|.. ++++++|+..+.|- .|+.......-++.+ -..++++|+.+ ..++.||+.+..-
T Consensus 146 cDly~~gsg--------~evYRlNLEqGrfL--~P~~~~~~~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 146 CDLYLVGSG--------SEVYRLNLEQGRFL--NPFETDSGELNVVSINEEHGLLACGTED------GVVEFWDPRDKSR 209 (703)
T ss_pred ccEEEeecC--------cceEEEEccccccc--cccccccccceeeeecCccceEEecccC------ceEEEecchhhhh
Confidence 356665543 56999999988773 233222222222222 34588888866 5899999987752
Q ss_pred -eecccC-----cc---CccceeEEEE-CCEEEEEeecCCcceEEEeCCCCc
Q 021759 192 -NLMSDG-----MK---EGWTGISIVL-EGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 192 -~~~~~~-----~~---~~~~~~~~~~-~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
..+... .+ ......+..+ |+.|-+.=|.....+++||+.+.+
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 222110 11 1111223344 435655555556788999987655
No 168
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=78.27 E-value=38 Score=28.17 Aligned_cols=172 Identities=15% Similarity=0.131 Sum_probs=96.9
Q ss_pred eEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCC----CCceeeCcCCcCcccceeEE
Q 021759 84 TIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPE----SDTWTTAAKLRMGLARYDSA 159 (308)
Q Consensus 84 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~----t~~W~~~~~~~~~r~~~~~~ 159 (308)
+.......+.|.+=|. |. ++++|++.+.. ...+.-|... ...|...-.+|.+..+.+-+
T Consensus 12 ~~~~~~~~GsWmrDpl-~~----------~~r~~~~~~~~------~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~V 74 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRDPL-PA----------DDRIYVMNYFD------GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHV 74 (249)
T ss_pred EEeeccccceeecCCC-cc----------cCceEEecccc------CceEEEeccHHHhhccCcceEEeCCCCccccceE
Confidence 3455566677865442 11 78899995543 2334444442 23455556788888888999
Q ss_pred EECCEEEEEecccCCCCcCCeEEEEeCCCC---ceeecccC-----ccCccceeE----EEECCEEEEEeecC---Cc-c
Q 021759 160 VMGSKMYVTEGWTWPFMFSPRGGVYDINKD---TWNLMSDG-----MKEGWTGIS----IVLEGKLFVISEHG---DC-P 223 (308)
Q Consensus 160 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~-----~~~~~~~~~----~~~~~~ly~~gg~~---~~-~ 223 (308)
+++|.+|.-.+. ++.+.+||+.+. .|..++.. .+-.+.+.. ++-++-|+++=-.. .. .
T Consensus 75 VynGs~yynk~~------t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv 148 (249)
T KOG3545|consen 75 VYNGSLYYNKAG------TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIV 148 (249)
T ss_pred EEcceEEeeccC------CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEE
Confidence 999999987543 368999999884 35555541 111222222 34445566653221 22 2
Q ss_pred eEEEeCCC----CceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeEEEeeeecCCCceeeeE
Q 021759 224 MKQYNPDD----DTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWK 287 (308)
Q Consensus 224 ~~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~ 287 (308)
+-..|+.+ .+|.. .+++ +....+..+=|.||++-........ ..+.||..+++=+
T Consensus 149 ~skLdp~tl~~e~tW~T----~~~k---~~~~~aF~iCGvLY~v~S~~~~~~~--i~yaydt~~~~~~ 207 (249)
T KOG3545|consen 149 LSKLDPETLEVERTWNT----TLPK---RSAGNAFMICGVLYVVHSYNCTHTQ--ISYAYDTTTGTQE 207 (249)
T ss_pred eeccCHHHhheeeeecc----ccCC---CCcCceEEEeeeeEEEeccccCCce--EEEEEEcCCCcee
Confidence 35677754 34532 2331 3344555666788888765443333 2244777666544
No 169
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.09 E-value=21 Score=26.69 Aligned_cols=62 Identities=15% Similarity=0.416 Sum_probs=39.2
Q ss_pred CEEEEEecccCCCCcCCeEEEEeCCCCc---eeecccCccCccceeEE----EECCEEEEEeecCCcceEEEeCCCCc--
Q 021759 163 SKMYVTEGWTWPFMFSPRGGVYDINKDT---WNLMSDGMKEGWTGISI----VLEGKLFVISEHGDCPMKQYNPDDDT-- 233 (308)
Q Consensus 163 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~~~~~~~----~~~~~ly~~gg~~~~~~~~yd~~~~~-- 233 (308)
.-+.++|-. +.+.+||.+.|+ +++++. +-....+ .....+.++|| ...+.-||-+-++
T Consensus 64 ~D~LliGt~-------t~llaYDV~~N~d~Fyke~~D----Gvn~i~~g~~~~~~~~l~ivGG--ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 64 RDCLLIGTQ-------TSLLAYDVENNSDLFYKEVPD----GVNAIVIGKLGDIPSPLVIVGG--NCSIQGFDYEGNEIF 130 (136)
T ss_pred cCEEEEecc-------ceEEEEEcccCchhhhhhCcc----ceeEEEEEecCCCCCcEEEECc--eEEEEEeCCCCcEEE
Confidence 346666664 589999999875 444432 2222211 12466888898 4588999987664
Q ss_pred eEEe
Q 021759 234 WRYV 237 (308)
Q Consensus 234 W~~~ 237 (308)
|+..
T Consensus 131 WtVt 134 (136)
T PF14781_consen 131 WTVT 134 (136)
T ss_pred EEec
Confidence 7654
No 170
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=77.07 E-value=46 Score=28.51 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEe---CCCCceeeCcCCcCcccceeEEEE------CCEEEEEecccCCCCcCCeEEE
Q 021759 113 NGKIMAVGGTGANINETMTAVECYD---PESDTWTTAAKLRMGLARYDSAVM------GSKMYVTEGWTWPFMFSPRGGV 183 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd---~~t~~W~~~~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~ 183 (308)
+|..++-||.+ ..+..++ -..|.|..- +|..+++ ++...+-.|.+ .++..
T Consensus 58 ~gs~~aSgG~D-------r~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD------k~v~~ 116 (338)
T KOG0265|consen 58 DGSCFASGGSD-------RAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD------KTVRG 116 (338)
T ss_pred CCCeEeecCCc-------ceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC------ceEEE
Confidence 78888999987 4555544 445566543 5555544 44455555554 68999
Q ss_pred EeCCCCceeecccCccCccceeEE-EECCEEEEEeecCCcceEEEeCCCC
Q 021759 184 YDINKDTWNLMSDGMKEGWTGISI-VLEGKLFVISEHGDCPMKQYNPDDD 232 (308)
Q Consensus 184 yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~ly~~gg~~~~~~~~yd~~~~ 232 (308)
||.++++-..--. ........+. .--|...+..|.+...+..||..+.
T Consensus 117 wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 117 WDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred Eecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 9998886422100 0000000111 1123344555555677888887643
No 171
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=76.92 E-value=55 Score=29.26 Aligned_cols=203 Identities=13% Similarity=0.038 Sum_probs=97.8
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEE-eCCEEEEEcCCCCCCCCCCCeEEEEeCCCCc
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGN-VNGKIMAVGGTGANINETMTAVECYDPESDT 142 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 142 (308)
+.++|+.+ + + ..+-++|+.+++ .+...+.......++. -+|+..+.+.+. .+.+.++|.+|.+
T Consensus 48 gr~~yv~~-r--d-----g~vsviD~~~~~--~v~~i~~G~~~~~i~~s~DG~~~~v~n~~------~~~v~v~D~~tle 111 (369)
T PF02239_consen 48 GRYLYVAN-R--D-----GTVSVIDLATGK--VVATIKVGGNPRGIAVSPDGKYVYVANYE------PGTVSVIDAETLE 111 (369)
T ss_dssp SSEEEEEE-T--T-----SEEEEEETTSSS--EEEEEE-SSEEEEEEE--TTTEEEEEEEE------TTEEEEEETTT--
T ss_pred CCEEEEEc-C--C-----CeEEEEECCccc--EEEEEecCCCcceEEEcCCCCEEEEEecC------CCceeEecccccc
Confidence 45788885 2 1 257899999876 4444555555444443 355544444442 4678999988764
Q ss_pred eee-Cc--CC----cCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc-CccCccceeEEEECCEEE
Q 021759 143 WTT-AA--KL----RMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD-GMKEGWTGISIVLEGKLF 214 (308)
Q Consensus 143 W~~-~~--~~----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~ly 214 (308)
=.. ++ .+ +.+|...........-|++.-.+ ...+++.|.....=..... ......+.....-+++.|
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE
T ss_pred ceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEeccccccceeeecccccccccccCccccee
Confidence 322 22 12 22333333334456667665433 2578888866542111111 011122222333456766
Q ss_pred EEeecCCcceEEEeCCCCceEEecCC-CCCCccccCCeEEEEeC-CEEEEEcCCceEeEEEeee-ecCCCceeeeEEe
Q 021759 215 VISEHGDCPMKQYNPDDDTWRYVGGD-KFPCEVMHRPFAVNGVE-GKIYVVSSGLNVAIGRVYE-EQNGGISAEWKVM 289 (308)
Q Consensus 215 ~~gg~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~-~~l~v~gG~~~~~~~~~~~-~~~~~~~~~W~~~ 289 (308)
+.+-...+.+.+.|.++++-..+-.. ..| .......+...+ |.++..+|........+.. ...-.....|+.+
T Consensus 187 ~va~~~sn~i~viD~~~~k~v~~i~~g~~p--~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGKLVALIDTGKKP--HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEE-SSSB--EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred eecccccceeEEEeeccceEEEEeeccccc--cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence 66655577899999998865443211 111 112333333333 4566666543333222222 1121223568754
No 172
>PRK04043 tolB translocation protein TolB; Provisional
Probab=76.42 E-value=61 Score=29.54 Aligned_cols=147 Identities=8% Similarity=-0.102 Sum_probs=81.9
Q ss_pred CceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 81 MQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 81 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
..++|.+|..++.++++...+..-.......-+.+||...... ....++++|..+++.+++..-. .... ...
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~-----g~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~S 327 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL-----GYPNIFMKKLNSGSVEQVVFHG--KNNS-SVS 327 (419)
T ss_pred CcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC-----CCceEEEEECCCCCeEeCccCC--CcCc-eEC
Confidence 4689999999998888865443111222222245677765432 2368999999998887764321 1222 223
Q ss_pred ECCE-EEEEecccCCC--CcCCeEEEEeCCCCceeecccCccCccceeEEEECCE-EEEEeecC-CcceEEEeCCCCceE
Q 021759 161 MGSK-MYVTEGWTWPF--MFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEHG-DCPMKQYNPDDDTWR 235 (308)
Q Consensus 161 ~~~~-iyv~GG~~~~~--~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-ly~~gg~~-~~~~~~yd~~~~~W~ 235 (308)
-+++ |.......... .....++++|+.++.++.+... . ........-||+ |+...... ...+..++++.+.=.
T Consensus 328 PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~ 405 (419)
T PRK04043 328 TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-G-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSF 405 (419)
T ss_pred CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-C-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence 3554 43333322111 1225899999999988877642 1 111233445666 33332221 335788888766544
Q ss_pred Ee
Q 021759 236 YV 237 (308)
Q Consensus 236 ~~ 237 (308)
.+
T Consensus 406 ~l 407 (419)
T PRK04043 406 LF 407 (419)
T ss_pred Ee
Confidence 44
No 173
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=76.38 E-value=36 Score=32.80 Aligned_cols=62 Identities=6% Similarity=0.133 Sum_probs=37.5
Q ss_pred CCEEEEEecccCCCCcCCeEEEEeCCCCce-eecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCC
Q 021759 162 GSKMYVTEGWTWPFMFSPRGGVYDINKDTW-NLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDD 231 (308)
Q Consensus 162 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~ 231 (308)
.|+-.+.|+.+ ..+.+||+.+..- .++.. ....-.+.....+|.+++.||. .+++..||...
T Consensus 588 ~Gr~LaSg~ed------~~I~iWDl~~~~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~-DnsV~lWD~~~ 650 (707)
T KOG0263|consen 588 CGRYLASGDED------GLIKIWDLANGSLVKQLKG-HTGTIYSLSFSRDGNVLASGGA-DNSVRLWDLTK 650 (707)
T ss_pred CCceEeecccC------CcEEEEEcCCCcchhhhhc-ccCceeEEEEecCCCEEEecCC-CCeEEEEEchh
Confidence 55555556654 5789999887542 22221 1111112235679999999987 66788888753
No 174
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=76.33 E-value=47 Score=28.19 Aligned_cols=147 Identities=7% Similarity=0.126 Sum_probs=76.2
Q ss_pred cCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceE-EEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCC
Q 021759 62 PRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFA-SGNVNGKIMAVGGTGANINETMTAVECYDPES 140 (308)
Q Consensus 62 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t 140 (308)
..++...+.|+++ ..+..+|..+++=++.=- ...+.-.+ +..-+++-.|-|..+ +.+-.||...
T Consensus 72 s~dg~~alS~swD-------~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrD-------kTiklwnt~g 136 (315)
T KOG0279|consen 72 SSDGNFALSASWD-------GTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRD-------KTIKLWNTLG 136 (315)
T ss_pred ccCCceEEecccc-------ceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCc-------ceeeeeeecc
Confidence 3466777777662 235667777653211100 01111111 222356666666665 6677777766
Q ss_pred CceeeCc-CCcCcccceeEEEE--C--CEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCcccee-EEEECCEEE
Q 021759 141 DTWTTAA-KLRMGLARYDSAVM--G--SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI-SIVLEGKLF 214 (308)
Q Consensus 141 ~~W~~~~-~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~ly 214 (308)
+.=-.+. .+. |.--.++.+ . +-+++-+|++ ..+-++|+.+-+-...-. -....... .+..||.+.
T Consensus 137 ~ck~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~s~D------ktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 137 VCKYTIHEDSH--REWVSCVRFSPNESNPIIVSASWD------KTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred cEEEEEecCCC--cCcEEEEEEcCCCCCcEEEEccCC------ceEEEEccCCcchhhccc-cccccEEEEEECCCCCEE
Confidence 5322222 222 222222222 2 5577777877 588889887754322111 11112222 255699999
Q ss_pred EEeecCCcceEEEeCCCCc
Q 021759 215 VISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 215 ~~gg~~~~~~~~yd~~~~~ 233 (308)
..||. ...++.+|+...+
T Consensus 208 asGgk-dg~~~LwdL~~~k 225 (315)
T KOG0279|consen 208 ASGGK-DGEAMLWDLNEGK 225 (315)
T ss_pred ecCCC-CceEEEEEccCCc
Confidence 99987 5577788876654
No 175
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.03 E-value=59 Score=29.22 Aligned_cols=104 Identities=13% Similarity=0.212 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCC---ceeeCcCCcCcccceeEEEECCE-EEEEecccCCCCcCCeEEEEeCCC
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESD---TWTTAAKLRMGLARYDSAVMGSK-MYVTEGWTWPFMFSPRGGVYDINK 188 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~ 188 (308)
++.-+|.|+.+ ..+.++|...+ .|+-+.. |+..-.+...||+ +++++ .+ ..+..|+.++
T Consensus 323 Dg~~~V~Gs~d-------r~i~~wdlDgn~~~~W~gvr~---~~v~dlait~Dgk~vl~v~-~d------~~i~l~~~e~ 385 (519)
T KOG0293|consen 323 DGFRFVTGSPD-------RTIIMWDLDGNILGNWEGVRD---PKVHDLAITYDGKYVLLVT-VD------KKIRLYNREA 385 (519)
T ss_pred CCceeEecCCC-------CcEEEecCCcchhhccccccc---ceeEEEEEcCCCcEEEEEe-cc------cceeeechhh
Confidence 77778888876 66777777654 6875543 4444445556665 55544 33 5778888776
Q ss_pred CceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEe
Q 021759 189 DTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYV 237 (308)
Q Consensus 189 ~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~ 237 (308)
..=..+.. ..++..+.+..-++++.++.-. ...+..+|.+ .|..+
T Consensus 386 ~~dr~lis-e~~~its~~iS~d~k~~LvnL~-~qei~LWDl~--e~~lv 430 (519)
T KOG0293|consen 386 RVDRGLIS-EEQPITSFSISKDGKLALVNLQ-DQEIHLWDLE--ENKLV 430 (519)
T ss_pred hhhhcccc-ccCceeEEEEcCCCcEEEEEcc-cCeeEEeecc--hhhHH
Confidence 54332322 3333444445668888887654 5678889988 44444
No 176
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.96 E-value=38 Score=28.20 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=56.5
Q ss_pred EEEEEeccCCCCCCCCceeEEEeCCCCCcccc----------------CCCCCCCcceEEEEeCCEEEEEcCCCCCCCCC
Q 021759 66 KLFVLGGMRSDTETPMQSTIMYRATTNQWQLA----------------SPMLTPRSFFASGNVNGKIMAVGGTGANINET 129 (308)
Q Consensus 66 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~----------------~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 129 (308)
+=++.||. ..+-.+|.||-. +|..- |....++...+.+.-++++++.
T Consensus 176 krlvSgGc-----Dn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw---------- 238 (299)
T KOG1332|consen 176 KRLVSGGC-----DNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW---------- 238 (299)
T ss_pred ceeeccCC-----ccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE----------
Confidence 45788888 335566777664 56432 2233456666666666666544
Q ss_pred CCeEEEEeCCCCceeeC--cCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCC-Cceeeccc
Q 021759 130 MTAVECYDPESDTWTTA--AKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINK-DTWNLMSD 196 (308)
Q Consensus 130 ~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~-~~W~~~~~ 196 (308)
.-+.+.++|+.. .+.|.+... ..-..-+.|..++|-+ +.+.+|-+.. ++|.++..
T Consensus 239 -----t~~~e~e~wk~tll~~f~~~~w~-vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 -----TKDEEYEPWKKTLLEEFPDVVWR-VSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -----EecCccCcccccccccCCcceEE-EEEeccccEEEEecCC------cEEEEEEeCCCCcEEEccc
Confidence 334445678654 344433332 2233445555554433 5777777664 48988763
No 177
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=75.81 E-value=64 Score=29.49 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=57.3
Q ss_pred CCCeEEEEeCCCCceeeCcCCcCcccceeEEEECC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEE
Q 021759 129 TMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISI 207 (308)
Q Consensus 129 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 207 (308)
...+++.+|..+++-.++.... ....+-.-.-+| +|+..-.. .-...++++|++...=+.+..... .......
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~-gi~~~Ps~spdG~~ivf~Sdr----~G~p~I~~~~~~g~~~~riT~~~~-~~~~p~~ 333 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGF-GINTSPSWSPDGSKIVFTSDR----GGRPQIYLYDLEGSQVTRLTFSGG-GNSNPVW 333 (425)
T ss_pred CCccEEEEcCCCCcceecccCC-ccccCccCCCCCCEEEEEeCC----CCCcceEEECCCCCceeEeeccCC-CCcCccC
Confidence 4577999999887633322211 112222223344 44444222 222489999998876655543121 1212223
Q ss_pred EECCEEEEEeecC--CcceEEEeCCCCc-eEEecC
Q 021759 208 VLEGKLFVISEHG--DCPMKQYNPDDDT-WRYVGG 239 (308)
Q Consensus 208 ~~~~~ly~~gg~~--~~~~~~yd~~~~~-W~~~~~ 239 (308)
.-+++.+++-+.. ...+..+|+.++. |+.+..
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc
Confidence 4466655554421 2568999998877 888765
No 178
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.01 E-value=50 Score=26.93 Aligned_cols=180 Identities=8% Similarity=0.052 Sum_probs=103.9
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCC-cceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCc
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR-SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDT 142 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 142 (308)
+++||..-|.. -.+.+.++|..+++=..-..++.++ .+-..+.+++.+|..==.. ...+.||+.+
T Consensus 55 ~g~i~esTG~y-----g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e-------gvaf~~d~~t-- 120 (262)
T COG3823 55 DGHILESTGLY-----GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE-------GVAFKYDADT-- 120 (262)
T ss_pred CCEEEEecccc-----ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc-------ceeEEEChHH--
Confidence 78888887773 3567889999876422111222234 3567888899999883322 3357888754
Q ss_pred eeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCce-eecccC---ccCccceeEEEECCEEEEEee
Q 021759 143 WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTW-NLMSDG---MKEGWTGISIVLEGKLFVISE 218 (308)
Q Consensus 143 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~---~~~~~~~~~~~~~~~ly~~gg 218 (308)
.+++...+.+-.+.+.+.-+..++.-.|. ..+..-||++-+= ..+... .|-..-.---.++|.+|.==-
T Consensus 121 ~~~lg~~~y~GeGWgLt~d~~~LimsdGs-------atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw 193 (262)
T COG3823 121 LEELGRFSYEGEGWGLTSDDKNLIMSDGS-------ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVW 193 (262)
T ss_pred hhhhcccccCCcceeeecCCcceEeeCCc-------eEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeee
Confidence 56677777777788888877777766563 3566667765321 111110 010000011245666665322
Q ss_pred cCCcceEEEeCCCCc---eEEecCCCCCCccc----cCCeEEEEe--CCEEEEEcC
Q 021759 219 HGDCPMKQYNPDDDT---WRYVGGDKFPCEVM----HRPFAVNGV--EGKIYVVSS 265 (308)
Q Consensus 219 ~~~~~~~~yd~~~~~---W~~~~~~~~~~~~~----~~~~~~~~~--~~~l~v~gG 265 (308)
. ...+.+.||++++ |..+.++....... ..-.+++.. .+++|+-|-
T Consensus 194 ~-t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 194 Q-TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred e-ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 2 5689999999985 88887643210000 112234433 567888775
No 179
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=71.95 E-value=70 Score=28.20 Aligned_cols=114 Identities=14% Similarity=0.217 Sum_probs=65.9
Q ss_pred eEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCccc--ceeEEEECCEEEEEecccCCCCcCCeEEE
Q 021759 107 FASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLA--RYDSAVMGSKMYVTEGWTWPFMFSPRGGV 183 (308)
Q Consensus 107 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 183 (308)
+++... +..+.+.||.+ +..++++..++.|-.. ++.-.. -.....+++.+.+-|+.+ ..+.+
T Consensus 68 Favsl~P~~~l~aTGGgD-------D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdms------G~v~v 132 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGD-------DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMS------GKVLV 132 (399)
T ss_pred EEEEeCCCCceEEecCCC-------ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCC------ccEEE
Confidence 344333 67888889886 6678899888875322 222222 223345688888888876 46777
Q ss_pred EeCCCC--ceeecccCccCccceeEEEE-CCEEEEEeecCCcceEEEeCCCC-ceEEecC
Q 021759 184 YDINKD--TWNLMSDGMKEGWTGISIVL-EGKLFVISEHGDCPMKQYNPDDD-TWRYVGG 239 (308)
Q Consensus 184 yd~~~~--~W~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~~~~~yd~~~~-~W~~~~~ 239 (308)
|+-+++ .|......-.--| . .-+ .+.++++|- ....+|+|...+. .-..+.+
T Consensus 133 ~~~stg~~~~~~~~e~~dieW--l-~WHp~a~illAG~-~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEW--L-KWHPRAHILLAGS-TDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EEcccCceEEEeecccCceEE--E-EecccccEEEeec-CCCcEEEEECCCcceeeEecC
Confidence 777665 4655422000000 0 111 345566554 3678999998874 3333443
No 180
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=71.79 E-value=77 Score=28.57 Aligned_cols=192 Identities=11% Similarity=0.081 Sum_probs=94.6
Q ss_pred CceeEEEeCCCCCcc--ccCCCCCCCc-ceEE-EEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC-----ceeeCcCCcC
Q 021759 81 MQSTIMYRATTNQWQ--LASPMLTPRS-FFAS-GNVNGKIMAVGGTGANINETMTAVECYDPESD-----TWTTAAKLRM 151 (308)
Q Consensus 81 ~~~~~~yd~~~~~W~--~~~~~~~~r~-~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~ 151 (308)
-..++++...+..-. .+-.-+.... ...+ ..-+++..++.-.. ... .+.++..|.... .|+.+.+--.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~--~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS--GTS-ESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES--SSS-EEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc--ccc-CCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 456777777766543 2222222222 2222 23355544433221 121 478999999875 7777644221
Q ss_pred cccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc---ee-ecccCccCccceeEEEECCEEEEEeecC-CcceEE
Q 021759 152 GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT---WN-LMSDGMKEGWTGISIVLEGKLFVISEHG-DCPMKQ 226 (308)
Q Consensus 152 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~-~~~~~~~~~~~~~~~~~~~~ly~~gg~~-~~~~~~ 226 (308)
-....+...++++|+.... ......+..+++.... |. .+.+......-......++.|++.--.+ ...+.+
T Consensus 278 -~~~~~v~~~~~~~yi~Tn~---~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 278 -GVEYYVDHHGDRLYILTND---DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp -S-EEEEEEETTEEEEEE-T---T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred -ceEEEEEccCCEEEEeeCC---CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEE
Confidence 2222333458899998663 3334578888888664 66 4433122122233356788888775443 457899
Q ss_pred EeCC-CCceEEecCCCCCCccccCCe-EEEE---eCCEEEEEcCCceEeEEEeeeecCCCceeeeEEe
Q 021759 227 YNPD-DDTWRYVGGDKFPCEVMHRPF-AVNG---VEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVM 289 (308)
Q Consensus 227 yd~~-~~~W~~~~~~~~~~~~~~~~~-~~~~---~~~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~~~ 289 (308)
||+. +..-..+ ++| ..+. .... ..+.+++.-... .....++. ||...++-+.+
T Consensus 354 ~~~~~~~~~~~~---~~p----~~g~v~~~~~~~~~~~~~~~~ss~-~~P~~~y~--~d~~t~~~~~~ 411 (414)
T PF02897_consen 354 YDLDDGKESREI---PLP----EAGSVSGVSGDFDSDELRFSYSSF-TTPPTVYR--YDLATGELTLL 411 (414)
T ss_dssp EETT-TEEEEEE---ESS----SSSEEEEEES-TT-SEEEEEEEET-TEEEEEEE--EETTTTCEEEE
T ss_pred EECCCCcEEeee---cCC----cceEEeccCCCCCCCEEEEEEeCC-CCCCEEEE--EECCCCCEEEE
Confidence 9998 3333333 343 1121 1111 134444433211 23445555 78777776554
No 181
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.70 E-value=67 Score=27.82 Aligned_cols=110 Identities=10% Similarity=0.119 Sum_probs=63.9
Q ss_pred CCCCceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCc--ceEEEEeCC-EEEEEcCCCCCCCC
Q 021759 52 CPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRS--FFASGNVNG-KIMAVGGTGANINE 128 (308)
Q Consensus 52 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~--~~~~~~~~~-~iyv~GG~~~~~~~ 128 (308)
+-+.|+.+.-.....+.+|+-+ + =.-..+||+.+++=...-..+..|+ +|++-.-++ .+|..=. + -..
T Consensus 4 P~RgH~~a~~p~~~~avafaRR--P----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn-d--~~~ 74 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARR--P----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN-D--YET 74 (305)
T ss_pred CccccceeeCCCCCeEEEEEeC--C----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecc-c--cCC
Confidence 3455666666656788888755 2 2346889999986433223356665 666666655 4555422 1 233
Q ss_pred CCCeEEEEeCCCCceeeCcCCcC-cccceeEEEE-CC-EEEEE-ecc
Q 021759 129 TMTAVECYDPESDTWTTAAKLRM-GLARYDSAVM-GS-KMYVT-EGW 171 (308)
Q Consensus 129 ~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~-~~-~iyv~-GG~ 171 (308)
....+-+||.. +..+++...+. ...-|-+..+ |+ .+.|. ||.
T Consensus 75 g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 75 GRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred CcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 45668899998 56667665543 3334445444 44 45554 565
No 182
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=70.49 E-value=82 Score=28.38 Aligned_cols=191 Identities=8% Similarity=-0.018 Sum_probs=94.5
Q ss_pred CCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceE-EEEe-CCEEEEEcCCCCCC----CCCCCeEEEE
Q 021759 63 RQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFA-SGNV-NGKIMAVGGTGANI----NETMTAVECY 136 (308)
Q Consensus 63 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~~~-~~~iyv~GG~~~~~----~~~~~~~~~y 136 (308)
.+++.++++=-. .+ .-...+.++|..+++.. +. ...+..+. ++-. +++.++....+... ......+++.
T Consensus 133 pdg~~la~~~s~-~G-~e~~~l~v~Dl~tg~~l--~d-~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 133 PDGKRLAYSLSD-GG-SEWYTLRVFDLETGKFL--PD-GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp TTSSEEEEEEEE-TT-SSEEEEEEEETTTTEEE--EE-EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred CCCCEEEEEecC-CC-CceEEEEEEECCCCcCc--CC-cccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 355555554221 11 23456888999988432 21 11222233 3333 44555554443101 1126778888
Q ss_pred eCCCCcee--eCcCCcCccc-ceeE-EEECCEEEEEecccCCCCcCCeEEEEeCCCC-----ceeecccCccCccceeEE
Q 021759 137 DPESDTWT--TAAKLRMGLA-RYDS-AVMGSKMYVTEGWTWPFMFSPRGGVYDINKD-----TWNLMSDGMKEGWTGISI 207 (308)
Q Consensus 137 d~~t~~W~--~~~~~~~~r~-~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~ 207 (308)
+..+..-+ .+=.-+.... ...+ ..-+++..++.-... .. .+.++..|.... .|..+.. ........+.
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~-~~-~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~ 284 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG-TS-ESEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVD 284 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS-SS-EEEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEE
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc-cc-CCeEEEEeccccCCCcCCcEEEeC-CCCceEEEEE
Confidence 88877543 2211222222 2222 233555433332221 11 368999999875 6877764 2222222333
Q ss_pred EECCEEEEEeecC--CcceEEEeCCCCc---eE-EecCCCCCCccccCCeEEEEeCCEEEEEcC
Q 021759 208 VLEGKLFVISEHG--DCPMKQYNPDDDT---WR-YVGGDKFPCEVMHRPFAVNGVEGKIYVVSS 265 (308)
Q Consensus 208 ~~~~~ly~~gg~~--~~~~~~yd~~~~~---W~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG 265 (308)
..++.+|+....+ ...+..+++.... |. .+.+.... ..-..+...++.|++.--
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~----~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED----VSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS----EEEEEEEEETTEEEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc----eeEEEEEEECCEEEEEEE
Confidence 4588999887544 5688999988765 66 44321111 223344556788777653
No 183
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=70.21 E-value=79 Score=28.07 Aligned_cols=135 Identities=16% Similarity=0.275 Sum_probs=76.1
Q ss_pred EEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCc--eeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCC
Q 021759 110 GNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDIN 187 (308)
Q Consensus 110 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 187 (308)
+..+++||+. ..+ ..+..+|+.+.+ |+................-+|+||+- ..+ ..+++||..
T Consensus 65 ~~~dg~v~~~-~~~-------G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~------g~~y~ld~~ 129 (370)
T COG1520 65 ADGDGTVYVG-TRD-------GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWD------GKLYALDAS 129 (370)
T ss_pred EeeCCeEEEe-cCC-------CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-ccc------ceEEEEECC
Confidence 6668999987 111 268999999886 86543220111122223338888774 332 279999996
Q ss_pred CC--ceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCC--ceEEecCCCCCCccccCCeEEEEeCCEEEEE
Q 021759 188 KD--TWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDD--TWRYVGGDKFPCEVMHRPFAVNGVEGKIYVV 263 (308)
Q Consensus 188 ~~--~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 263 (308)
+. .|+.-.... ..+....+..++.+|+... ...++++|.++. .|+.-...+++ .+.....+..++.+|+-
T Consensus 130 ~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~--~g~~~al~~~tG~~~W~~~~~~~~~---~~~~~~~~~~~~~vy~~ 203 (370)
T COG1520 130 TGTLVWSRNVGGS-PYYASPPVVGDGTVYVGTD--DGHLYALNADTGTLKWTYETPAPLS---LSIYGSPAIASGTVYVG 203 (370)
T ss_pred CCcEEEEEecCCC-eEEecCcEEcCcEEEEecC--CCeEEEEEccCCcEEEEEecCCccc---cccccCceeecceEEEe
Confidence 44 587654321 2233334666788877642 457888888865 48743322122 02222223566777766
Q ss_pred cC
Q 021759 264 SS 265 (308)
Q Consensus 264 gG 265 (308)
.-
T Consensus 204 ~~ 205 (370)
T COG1520 204 SD 205 (370)
T ss_pred cC
Confidence 54
No 184
>PRK02889 tolB translocation protein TolB; Provisional
Probab=69.89 E-value=88 Score=28.49 Aligned_cols=147 Identities=11% Similarity=-0.015 Sum_probs=71.0
Q ss_pred CceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 81 MQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 81 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
...++.+|.....-+.+......-..... .-+++-+++.... .....++++|+.+++=+.+...+.. .......
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~w-SPDG~~la~~s~~----~~~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~S 248 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAW-SPDGTKLAYVSFE----SKKPVVYVHDLATGRRRVVANFKGS-NSAPAWS 248 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceE-cCCCCEEEEEEcc----CCCcEEEEEECCCCCEEEeecCCCC-ccceEEC
Confidence 35677777754333333322221111111 1244433333321 1235699999988865555433321 1112222
Q ss_pred ECC-EEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCE-EEEEeec-CCcceEEEeCCCCceEEe
Q 021759 161 MGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEH-GDCPMKQYNPDDDTWRYV 237 (308)
Q Consensus 161 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-ly~~gg~-~~~~~~~yd~~~~~W~~~ 237 (308)
-++ +|++....+ + ..+++.+|..++..+.+... ..........-+++ |+..... ....++.+|.++++.+.+
T Consensus 249 PDG~~la~~~~~~--g--~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 249 PDGRTLAVALSRD--G--NSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred CCCCEEEEEEccC--C--CceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 355 455443322 1 25789999887766555431 11111222334555 4443322 134788888888777766
Q ss_pred c
Q 021759 238 G 238 (308)
Q Consensus 238 ~ 238 (308)
.
T Consensus 324 t 324 (427)
T PRK02889 324 T 324 (427)
T ss_pred e
Confidence 4
No 185
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=69.32 E-value=76 Score=27.55 Aligned_cols=137 Identities=15% Similarity=0.038 Sum_probs=70.2
Q ss_pred CceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCc-eeeCc----CCcCcccc
Q 021759 81 MQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDT-WTTAA----KLRMGLAR 155 (308)
Q Consensus 81 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~----~~~~~r~~ 155 (308)
-+.+++||+.+++=+... +|.........-.++.|.++.- .+..+++.+.. |+.+. ..+.-|.+
T Consensus 46 ~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~~----------g~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 46 GGRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACEH----------GVRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CCeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEcc----------ccEEEeccCCceeEEeccccCCCCcCCCC
Confidence 356788888765433322 2222222222222455555422 24566664443 34443 23344555
Q ss_pred eeEEEECCEEEEEecc-----cCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCE-EEEEeecCCcceEEEeC
Q 021759 156 YDSAVMGSKMYVTEGW-----TWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEHGDCPMKQYNP 229 (308)
Q Consensus 156 ~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-ly~~gg~~~~~~~~yd~ 229 (308)
=..+-.+|.+|+-.-. .........++++|| .....++.........+.+..-+++ +|+..- ..+.+++|+.
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT-~~~~i~r~~~ 192 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT-PANRIHRYDL 192 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC-CCCeEEEEec
Confidence 5556667888775332 112233447999998 4555554432233334445555664 666553 2567888877
Q ss_pred C
Q 021759 230 D 230 (308)
Q Consensus 230 ~ 230 (308)
.
T Consensus 193 d 193 (307)
T COG3386 193 D 193 (307)
T ss_pred C
Confidence 5
No 186
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=69.17 E-value=67 Score=26.88 Aligned_cols=195 Identities=13% Similarity=0.133 Sum_probs=89.0
Q ss_pred CCCEEEEEe--ccCCCCCCCCceeEEEeCC-CCCccccCCCCCC--------CcceEEEEeCCEEEEEcCCCCCCCCCCC
Q 021759 63 RQGKLFVLG--GMRSDTETPMQSTIMYRAT-TNQWQLASPMLTP--------RSFFASGNVNGKIMAVGGTGANINETMT 131 (308)
Q Consensus 63 ~~~~iyv~G--G~~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 131 (308)
.+++|+++- +............+..... -.+|.....++.. -....+..-++++++. .+.. ......
T Consensus 57 ~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~-~~~~~~ 134 (275)
T PF13088_consen 57 PDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHE-SGGSFS 134 (275)
T ss_dssp TTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEE-SSCEEE
T ss_pred CCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-Eeec-cccCcc
Confidence 488888886 2222111212222344444 3489876543321 1122234447888887 2210 111123
Q ss_pred eEEEEeCC-CCceeeCcCCcCc-ccceeEEE--ECCEEEEEecccCCCCcCCeEEEEeCC-CCceeeccc-CccCcccee
Q 021759 132 AVECYDPE-SDTWTTAAKLRMG-LARYDSAV--MGSKMYVTEGWTWPFMFSPRGGVYDIN-KDTWNLMSD-GMKEGWTGI 205 (308)
Q Consensus 132 ~~~~yd~~-t~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~-~~~W~~~~~-~~~~~~~~~ 205 (308)
....|... -.+|+.....+.. .....+.+ -+++|+++-... ... .....+... -.+|+.... .++......
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~~~~ 211 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGGRTWSPPQPTNLPNPNSSI 211 (275)
T ss_dssp EEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTTSS-EEEEEEECSSCCEEE
T ss_pred eEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCCCcCCCceecccCcccCCc
Confidence 33444443 3479887666422 22222322 377888886542 111 223333333 347987543 223333333
Q ss_pred EEE--ECCEEEEEeecC--Cc--ceEEEeCCCCceEEecCCCCCCccccCCeEEEE-eCCEEEE
Q 021759 206 SIV--LEGKLFVISEHG--DC--PMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNG-VEGKIYV 262 (308)
Q Consensus 206 ~~~--~~~~ly~~gg~~--~~--~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~v 262 (308)
... -+++++++.... .. .+..-.-...+|.....+............++. -|++|+|
T Consensus 212 ~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 212 SLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred eEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 322 267888777631 22 233333446789876543222000123333444 4679986
No 187
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.41 E-value=79 Score=27.38 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=63.7
Q ss_pred CcccceeEEEE--CCEEEEEecccCCCCcCCeEEEEeCCCCcee-ecccCccCccceeEEEE-CCE-EEEEeecC---Cc
Q 021759 151 MGLARYDSAVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDTWN-LMSDGMKEGWTGISIVL-EGK-LFVISEHG---DC 222 (308)
Q Consensus 151 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~-~~~-ly~~gg~~---~~ 222 (308)
.|-..|+++.. +..+.+|+-..+ .-+.+||+.+..=. .+..+.....+++.++. +++ ||..-... ..
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRPG-----~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRPG-----TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRG 77 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCCC-----cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcE
Confidence 34456666665 467777777653 57899999988643 34433444455666544 455 55543221 34
Q ss_pred ceEEEeCCCCceEEecCCCCCCccccCCeEEEE-eCC-EEEEEcCC
Q 021759 223 PMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNG-VEG-KIYVVSSG 266 (308)
Q Consensus 223 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~-~l~v~gG~ 266 (308)
.|-+||.. ....++.+.+..+ ...|-+.. -|+ .|+|.-|+
T Consensus 78 ~IgVyd~~-~~~~ri~E~~s~G---IGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 78 VIGVYDAA-RGYRRIGEFPSHG---IGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred EEEEEECc-CCcEEEeEecCCC---cChhhEEEcCCCCEEEEEcCC
Confidence 68899998 6777777644431 33455533 355 56666665
No 188
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=67.26 E-value=56 Score=25.18 Aligned_cols=82 Identities=9% Similarity=0.107 Sum_probs=45.0
Q ss_pred EEECCEEEEEeecCCc----ceEEEeCCCCce-EEecCCCCCCccccCCeEE-EEeCCEEEEEcCCceEeEEEeeeec-C
Q 021759 207 IVLEGKLFVISEHGDC----PMKQYNPDDDTW-RYVGGDKFPCEVMHRPFAV-NGVEGKIYVVSSGLNVAIGRVYEEQ-N 279 (308)
Q Consensus 207 ~~~~~~ly~~gg~~~~----~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~-~~~~~~l~v~gG~~~~~~~~~~~~~-~ 279 (308)
+.++|.+|=+...... .+..||+.+.++ +.++ +|...........+ +..+++|-++--......-.++.+. |
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~-lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP-LPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC-CCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 5678888866544321 599999999999 5553 23221101222333 2336788777432222223444422 4
Q ss_pred CCceeeeEEe
Q 021759 280 GGISAEWKVM 289 (308)
Q Consensus 280 ~~~~~~W~~~ 289 (308)
+.....|+++
T Consensus 81 ~~~~~SWtK~ 90 (164)
T PF07734_consen 81 GYGKESWTKL 90 (164)
T ss_pred ccCcceEEEE
Confidence 4447899864
No 189
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=66.84 E-value=52 Score=30.39 Aligned_cols=111 Identities=10% Similarity=0.206 Sum_probs=59.3
Q ss_pred ceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCC-CCcceEEE-EeCCEEEEEcCCCCCCCCCCCeE
Q 021759 56 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLT-PRSFFASG-NVNGKIMAVGGTGANINETMTAV 133 (308)
Q Consensus 56 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~ 133 (308)
...+-+..+++-.++||. .+.+-++|..+-+=+.-..++. .-.+++++ ..+.++... -+. ...+
T Consensus 468 iRSckL~pdgrtLivGGe-------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFs-ccs------dGnI 533 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGE-------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS-CCS------DGNI 533 (705)
T ss_pred eeeeEecCCCceEEeccc-------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee-ecc------CCcE
Confidence 344445558888899887 3456667776655443334443 22333333 335555433 332 2347
Q ss_pred EEEeCCCCceeeCcCCcCcccceeEEEE--CC-EEEEEecccCCCCcCCeEEEEeCCCC
Q 021759 134 ECYDPESDTWTTAAKLRMGLARYDSAVM--GS-KMYVTEGWTWPFMFSPRGGVYDINKD 189 (308)
Q Consensus 134 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~yd~~~~ 189 (308)
.+||+..++- +..++--..+..+..+ +| +|+. ||.+ +++-++|+.+.
T Consensus 534 ~vwDLhnq~~--VrqfqGhtDGascIdis~dGtklWT-GGlD------ntvRcWDlreg 583 (705)
T KOG0639|consen 534 AVWDLHNQTL--VRQFQGHTDGASCIDISKDGTKLWT-GGLD------NTVRCWDLREG 583 (705)
T ss_pred EEEEccccee--eecccCCCCCceeEEecCCCceeec-CCCc------cceeehhhhhh
Confidence 8899887643 3334433344444333 34 4554 7776 56666666544
No 190
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=66.68 E-value=77 Score=26.59 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=43.3
Q ss_pred EEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccce--eE--EE
Q 021759 133 VECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTG--IS--IV 208 (308)
Q Consensus 133 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~--~~--~~ 208 (308)
+..+|+.+-.--+--.||.-....++- -+..+||.||.+ -.+++||-.|+.= +.. ...+..+ ++ ..
T Consensus 207 V~Fwdaksf~~lKs~k~P~nV~SASL~-P~k~~fVaGged------~~~~kfDy~TgeE--i~~-~nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYKMPCNVESASLH-PKKEFFVAGGED------FKVYKFDYNTGEE--IGS-YNKGHFGPVHCVRFS 276 (334)
T ss_pred eEEeccccccceeeccCcccccccccc-CCCceEEecCcc------eEEEEEeccCCce--eee-cccCCCCceEEEEEC
Confidence 555666543222222344333222221 245799999976 3678888777641 111 1111122 22 34
Q ss_pred ECCEEEEEeecCCcceEEEe
Q 021759 209 LEGKLFVISEHGDCPMKQYN 228 (308)
Q Consensus 209 ~~~~ly~~gg~~~~~~~~yd 228 (308)
-+|.+|..|..+ ..+..+.
T Consensus 277 PdGE~yAsGSED-GTirlWQ 295 (334)
T KOG0278|consen 277 PDGELYASGSED-GTIRLWQ 295 (334)
T ss_pred CCCceeeccCCC-ceEEEEE
Confidence 489999998763 3444443
No 191
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=66.52 E-value=87 Score=27.15 Aligned_cols=148 Identities=12% Similarity=0.116 Sum_probs=78.5
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCc-cccCCCC-----CCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEe
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQW-QLASPML-----TPRSFFASGNVNGKIMAVGGTGANINETMTAVECYD 137 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd 137 (308)
-+.+-++||... .+.+.+.+.++|-...+- .++.... .-|..+-+++..++|||+-=.+ .+..+..+|
T Consensus 58 ~N~laLVGGg~~-pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~-----n~k~l~~~e 131 (346)
T KOG2111|consen 58 SNYLALVGGGSR-PKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPD-----NPKLLHVIE 131 (346)
T ss_pred hceEEEecCCCC-CCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCC-----Chhheeeee
Confidence 356667776643 346788999999554432 2222111 1234566677778887762211 233344444
Q ss_pred CCCCceeeCcCCcCcccceeEEEE-CCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc-CccCccc---eeEEEECCE
Q 021759 138 PESDTWTTAAKLRMGLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD-GMKEGWT---GISIVLEGK 212 (308)
Q Consensus 138 ~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~---~~~~~~~~~ 212 (308)
...| |..-++++-. +..+.++-|.. ...+++-|+...+-. ++ ..+.... ..+...+|.
T Consensus 132 t~~N----------PkGlC~~~~~~~k~~LafPg~k-----~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt 194 (346)
T KOG2111|consen 132 TRSN----------PKGLCSLCPTSNKSLLAFPGFK-----TGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGT 194 (346)
T ss_pred cccC----------CCceEeecCCCCceEEEcCCCc-----cceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCcc
Confidence 3322 2222222222 44566666643 257888887654431 11 1111111 122344788
Q ss_pred EEEEeecCCcceEEEeCCCCce
Q 021759 213 LFVISEHGDCPMKQYNPDDDTW 234 (308)
Q Consensus 213 ly~~gg~~~~~~~~yd~~~~~W 234 (308)
+...+...+.-+.+||..+++-
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcE
Confidence 8888877677789999988863
No 192
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=65.69 E-value=88 Score=26.91 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=36.1
Q ss_pred CCEEEEEeccCCCCCCCCceeEE-EeCCCCCccccCCCCCCCcceEEEEe------CCEEEEEcCCCCCCCCCCCeEEEE
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIM-YRATTNQWQLASPMLTPRSFFASGNV------NGKIMAVGGTGANINETMTAVECY 136 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~-yd~~~~~W~~~~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~y 136 (308)
++..++.||.+. .--+|. |....|.|..- +|+.++. ++...+-.|.+ ..+..+
T Consensus 58 ~gs~~aSgG~Dr-----~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD-------k~v~~w 117 (338)
T KOG0265|consen 58 DGSCFASGGSDR-----AIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD-------KTVRGW 117 (338)
T ss_pred CCCeEeecCCcc-----eEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC-------ceEEEE
Confidence 778888888832 111233 66677777654 2333322 34455555554 678899
Q ss_pred eCCCCcee
Q 021759 137 DPESDTWT 144 (308)
Q Consensus 137 d~~t~~W~ 144 (308)
|.++++-.
T Consensus 118 D~~tG~~~ 125 (338)
T KOG0265|consen 118 DAETGKRI 125 (338)
T ss_pred ecccceee
Confidence 99888643
No 193
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=65.64 E-value=87 Score=28.51 Aligned_cols=140 Identities=13% Similarity=0.021 Sum_probs=71.1
Q ss_pred cceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeE---EEECCEEEEEecccCCCCcCCeE
Q 021759 105 SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDS---AVMGSKMYVTEGWTWPFMFSPRG 181 (308)
Q Consensus 105 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~---~~~~~~iyv~GG~~~~~~~~~~~ 181 (308)
--++++..+.--|+++|.- ..++|++...++.--.+ + .+.+.... ..-|+..++-||.+ ..+
T Consensus 83 ~v~al~s~n~G~~l~ag~i------~g~lYlWelssG~LL~v--~-~aHYQ~ITcL~fs~dgs~iiTgskD------g~V 147 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTI------SGNLYLWELSSGILLNV--L-SAHYQSITCLKFSDDGSHIITGSKD------GAV 147 (476)
T ss_pred ceeeeecCCCceEEEeecc------cCcEEEEEeccccHHHH--H-HhhccceeEEEEeCCCcEEEecCCC------ccE
Confidence 3567777777778887742 36688888877742111 1 11221111 12378888888887 356
Q ss_pred EEEeCCCCceeec---ccCccCccceeEEE----------ECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCcccc
Q 021759 182 GVYDINKDTWNLM---SDGMKEGWTGISIV----------LEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMH 248 (308)
Q Consensus 182 ~~yd~~~~~W~~~---~~~~~~~~~~~~~~----------~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~ 248 (308)
.+|++.+- -..- .+.+...++.+... .+.+||-.+- ...+.+||+..+.- +....+| +
T Consensus 148 ~vW~l~~l-v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~--D~t~k~wdlS~g~L--Llti~fp----~ 218 (476)
T KOG0646|consen 148 LVWLLTDL-VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE--DRTIKLWDLSLGVL--LLTITFP----S 218 (476)
T ss_pred EEEEEEee-cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC--CceEEEEEecccee--eEEEecC----C
Confidence 66654221 1111 11122223333211 2445555543 45788999988753 2222345 3
Q ss_pred CCeEEEE-eCCEEEEEcCCce
Q 021759 249 RPFAVNG-VEGKIYVVSSGLN 268 (308)
Q Consensus 249 ~~~~~~~-~~~~l~v~gG~~~ 268 (308)
.-.+++. ..++.+.+|+...
T Consensus 219 si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cceeEEEcccccEEEecCCcc
Confidence 3344433 3455555665433
No 194
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=65.44 E-value=1.5e+02 Score=29.50 Aligned_cols=114 Identities=12% Similarity=0.218 Sum_probs=62.6
Q ss_pred eEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC--ceeeCcCCcCcc----------cce-------------eEEEE
Q 021759 107 FASGNVNGKIMAVGGTGANINETMTAVECYDPESD--TWTTAAKLRMGL----------ARY-------------DSAVM 161 (308)
Q Consensus 107 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~r----------~~~-------------~~~~~ 161 (308)
.+-+.+++.||+.... +.++.+|..|+ .|+.-+..+... ..+ +.+++
T Consensus 188 ~TPlvvgg~lYv~t~~--------~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~ 259 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH--------NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADC 259 (764)
T ss_pred cCCEEECCEEEEECCC--------CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccccccccccc
Confidence 4556679999998543 45788888776 576544332110 000 01234
Q ss_pred CCEEEEEecccCCCCcCCeEEEEeCCCCc--eeecc-------c---CccCcc---ceeEEEECCEEEEEeecC------
Q 021759 162 GSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMS-------D---GMKEGW---TGISIVLEGKLFVISEHG------ 220 (308)
Q Consensus 162 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~-------~---~~~~~~---~~~~~~~~~~ly~~gg~~------ 220 (308)
+++||+. ..+ ..+..+|.+|++ |..-. . ..+... .+.-++.++++++ |+..
T Consensus 260 ~~rV~~~-T~D------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~ 331 (764)
T TIGR03074 260 ARRIILP-TSD------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYST 331 (764)
T ss_pred CCEEEEe-cCC------CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-Eecccccccc
Confidence 5677763 322 367778877664 54211 0 011111 1112677888776 4321
Q ss_pred ---CcceEEEeCCCCc--eEE
Q 021759 221 ---DCPMKQYNPDDDT--WRY 236 (308)
Q Consensus 221 ---~~~~~~yd~~~~~--W~~ 236 (308)
...+..||.+|++ |+-
T Consensus 332 ~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 332 DEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred cCCCcEEEEEECCCCcEeeEE
Confidence 2468999999875 764
No 195
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=65.23 E-value=89 Score=29.35 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=58.0
Q ss_pred CEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccce---eEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc
Q 021759 114 GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARY---DSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT 190 (308)
Q Consensus 114 ~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 190 (308)
..|+.+.-.-...+...-+.-+|+...++-++++-...+.... ++...+...+++|..+ .++..||..++.
T Consensus 219 ~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D------gSiiLyD~~~~~ 292 (545)
T PF11768_consen 219 YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED------GSIILYDTTRGV 292 (545)
T ss_pred cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecC------CeEEEEEcCCCe
Confidence 3455554432223344556678888887766654222222211 2222366778888887 589999987764
Q ss_pred eeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCC
Q 021759 191 WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDD 231 (308)
Q Consensus 191 W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~ 231 (308)
=+.......+ ...+.--++.++++|+. ...+.+||...
T Consensus 293 t~~~ka~~~P--~~iaWHp~gai~~V~s~-qGelQ~FD~AL 330 (545)
T PF11768_consen 293 TLLAKAEFIP--TLIAWHPDGAIFVVGSE-QGELQCFDMAL 330 (545)
T ss_pred eeeeeecccc--eEEEEcCCCcEEEEEcC-CceEEEEEeec
Confidence 2222211111 01111226777777765 45677777543
No 196
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=64.57 E-value=1.1e+02 Score=27.54 Aligned_cols=174 Identities=10% Similarity=0.023 Sum_probs=72.5
Q ss_pred CceeEEEeCCCCCccccCCCCCCCcceEEE-EeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeC-cCCcCcccceeE
Q 021759 81 MQSTIMYRATTNQWQLASPMLTPRSFFASG-NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTA-AKLRMGLARYDS 158 (308)
Q Consensus 81 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~ 158 (308)
...++..|..+++.+.+-.-..- .+|-.. ..+..+.++.-.++ ....-..+|..|........+ ..++....+|--
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~w-lgH~~fsP~dp~li~fCHEGp-w~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEf 244 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDW-LGHVQFSPTDPTLIMFCHEGP-WDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEF 244 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS--EEEEEEETTEEEEEEEEE-S--TTTSS-SEEEEETTS---EESS---TTEEEEEEE
T ss_pred CceEEEEECCCCceeEEEecCcc-ccCcccCCCCCCEEEEeccCC-cceeceEEEEEEcCCCcceeeecCCCCccccccc
Confidence 34455566666554433321110 122222 23445556633221 222335789998766554444 333334445555
Q ss_pred EEECCE-EEEEecccCCCCcCCeEEEEeCCCCceeecccCccCcccee-EEEECCEEEEEeecCC---------------
Q 021759 159 AVMGSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI-SIVLEGKLFVISEHGD--------------- 221 (308)
Q Consensus 159 ~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~ly~~gg~~~--------------- 221 (308)
-+.+|+ |+..+... +....-+..||+.+..=+.+.. ++ +..+ ....+++|++-.|.+.
T Consensus 245 w~~DG~~i~y~~~~~--~~~~~~i~~~d~~t~~~~~~~~-~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTP--GGQDFWIAGYDPDTGERRRLME-MP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp E-TTSS-EEEEEEET--TT--EEEEEE-TTT--EEEEEE-E---SEEEEEE-TTSSEEEEEE------------------
T ss_pred ccCCCCEEEEEeecC--CCCceEEEeeCCCCCCceEEEe-CC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCC
Confidence 555654 44444332 2223468889999875333322 22 2333 3566889988777541
Q ss_pred cceEEEeCCCCceEEecCC----------CCCCccccCCeEEEEeCCEEEEEcC
Q 021759 222 CPMKQYNPDDDTWRYVGGD----------KFPCEVMHRPFAVNGVEGKIYVVSS 265 (308)
Q Consensus 222 ~~~~~yd~~~~~W~~~~~~----------~~~~~~~~~~~~~~~~~~~l~v~gG 265 (308)
.-++.+++++..-..+... ... ...+-...-|++-+|+.-
T Consensus 320 p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~----~hPhp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 320 PWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV----THPHPSFSPDGKWVLFRS 369 (386)
T ss_dssp -EEEEEETTTTEEEEEEE-------BTTBSST----T----EE-TTSSEEEEEE
T ss_pred cEEEEeccccCceeeeeeccCcceeecCCCcc----CCCCCccCCCCCEEEEEC
Confidence 1345566666554433321 111 334455666777666654
No 197
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=64.26 E-value=1.1e+02 Score=27.76 Aligned_cols=132 Identities=17% Similarity=0.260 Sum_probs=69.1
Q ss_pred EeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeE-EEEC--CEEEEEecccCCCCcCCeEEEEeCC
Q 021759 111 NVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDS-AVMG--SKMYVTEGWTWPFMFSPRGGVYDIN 187 (308)
Q Consensus 111 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~-~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~ 187 (308)
.-+++.+++||.+ +.+.++|+.|.+=.. .++.-|..-.. +... ..+|.. +.+ .++-+|+.+
T Consensus 211 S~Dgkylatgg~d-------~~v~Iw~~~t~ehv~--~~~ghr~~V~~L~fr~gt~~lys~-s~D------rsvkvw~~~ 274 (479)
T KOG0299|consen 211 SSDGKYLATGGRD-------RHVQIWDCDTLEHVK--VFKGHRGAVSSLAFRKGTSELYSA-SAD------RSVKVWSID 274 (479)
T ss_pred cCCCcEEEecCCC-------ceEEEecCcccchhh--cccccccceeeeeeecCccceeee-ecC------CceEEEehh
Confidence 3489999999997 667888887754222 22323322222 2222 346663 332 466666665
Q ss_pred CCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCc-eEEecCCCCCCccccCCeEEEEeCCEEEEEcCC
Q 021759 188 KDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDT-WRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 266 (308)
Q Consensus 188 ~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~ 266 (308)
..+..+.-...+..-.+..+.-..++..+||. ..++..|+....+ -...+. . ..--+++.+++.=|+.|+.
T Consensus 275 ~~s~vetlyGHqd~v~~IdaL~reR~vtVGgr-DrT~rlwKi~eesqlifrg~---~----~sidcv~~In~~HfvsGSd 346 (479)
T KOG0299|consen 275 QLSYVETLYGHQDGVLGIDALSRERCVTVGGR-DRTVRLWKIPEESQLIFRGG---E----GSIDCVAFINDEHFVSGSD 346 (479)
T ss_pred HhHHHHHHhCCccceeeechhcccceEEeccc-cceeEEEeccccceeeeeCC---C----CCeeeEEEecccceeeccC
Confidence 54432211111111112224446778888887 4566667663322 111111 1 2233567788888888874
No 198
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=63.04 E-value=1e+02 Score=26.77 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=88.7
Q ss_pred eEEEeCCCCC-ccccCC----CCCCCcceEEEEeCCEEEEEcCC----CCCCCCCCCeEEEEeCCCCceeeCcCCcCccc
Q 021759 84 TIMYRATTNQ-WQLASP----MLTPRSFFASGNVNGKIMAVGGT----GANINETMTAVECYDPESDTWTTAAKLRMGLA 154 (308)
Q Consensus 84 ~~~yd~~~~~-W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~----~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 154 (308)
++.+++.+.. |+.+.. .+.-|.+=..+.-+|.+|+---. +.........++++||. ...+++-.-.....
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~ 165 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIP 165 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEec
Confidence 4566665443 344443 23344444555557777764322 12234455689999994 44554432222223
Q ss_pred ceeEEEECC-EEEEEecccCCCCcCCeEEEEeCCC--C------ceeecccCccCccceeEEEECCEEEEEeecCCcceE
Q 021759 155 RYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINK--D------TWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMK 225 (308)
Q Consensus 155 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~--~------~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~ 225 (308)
+--+..-++ .+|+.-- ..+.+++|+... . .+..... .+...-+.++-.++.||+........+.
T Consensus 166 NGla~SpDg~tly~aDT------~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~ 238 (307)
T COG3386 166 NGLAFSPDGKTLYVADT------PANRIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVV 238 (307)
T ss_pred CceEECCCCCEEEEEeC------CCCeEEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEE
Confidence 333333455 5777632 235778886652 1 1111111 1222334455668999975544345899
Q ss_pred EEeCCCCceEEecCCCCCCccccCCeEEEEeC---CEEEEEcCCceEe
Q 021759 226 QYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVE---GKIYVVSSGLNVA 270 (308)
Q Consensus 226 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~l~v~gG~~~~~ 270 (308)
+|+++-..-..+ .+|. .....++..+ +.|||..-..+..
T Consensus 239 ~~~pdG~l~~~i---~lP~---~~~t~~~FgG~~~~~L~iTs~~~~~~ 280 (307)
T COG3386 239 RFNPDGKLLGEI---KLPV---KRPTNPAFGGPDLNTLYITSARSGMS 280 (307)
T ss_pred EECCCCcEEEEE---ECCC---CCCccceEeCCCcCEEEEEecCCCCC
Confidence 999983333333 4441 1222333333 6799888765443
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=62.27 E-value=1.1e+02 Score=26.70 Aligned_cols=96 Identities=9% Similarity=0.189 Sum_probs=53.3
Q ss_pred CceeEEEeCCCCC-ccccCCCCCCCcceEEEEe---CCEEEEEcCCCCCCCCCCCeEEEEeC-CCCceeeCcCCcCcccc
Q 021759 81 MQSTIMYRATTNQ-WQLASPMLTPRSFFASGNV---NGKIMAVGGTGANINETMTAVECYDP-ESDTWTTAAKLRMGLAR 155 (308)
Q Consensus 81 ~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~-~t~~W~~~~~~~~~r~~ 155 (308)
..++.+|....++ |+.+..+...-..-+.+=+ .++| +-++.+ +..+++.. ..++|....-+. |.+
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~d-------rnayVw~~~~~~~WkptlvLl--RiN 100 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHD-------RNAYVWTQPSGGTWKPTLVLL--RIN 100 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCC-------CCccccccCCCCeeccceeEE--Eec
Confidence 4589999998888 9998876544333333322 2444 455554 34566666 667897654332 333
Q ss_pred eeEEEE----CCEEEEEecccCCCCcCCeEEEEeCCCCce
Q 021759 156 YDSAVM----GSKMYVTEGWTWPFMFSPRGGVYDINKDTW 191 (308)
Q Consensus 156 ~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 191 (308)
-++..+ ++..|++|+- ...-.+..|. +.+.|
T Consensus 101 rAAt~V~WsP~enkFAVgSg----ar~isVcy~E-~ENdW 135 (361)
T KOG1523|consen 101 RAATCVKWSPKENKFAVGSG----ARLISVCYYE-QENDW 135 (361)
T ss_pred cceeeEeecCcCceEEeccC----ccEEEEEEEe-cccce
Confidence 333322 4556666652 2233455554 45555
No 200
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=61.99 E-value=79 Score=27.38 Aligned_cols=137 Identities=10% Similarity=0.126 Sum_probs=68.4
Q ss_pred CceeEEEeCCCCCccccCCCCCCCcceEEE--Ee--CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccce
Q 021759 81 MQSTIMYRATTNQWQLASPMLTPRSFFASG--NV--NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARY 156 (308)
Q Consensus 81 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~ 156 (308)
.+.+..||.++-+-.--.. |...+.-+++ .+ .+++|+.|..+ ..+-++|-.+++..+ ....+..+.
T Consensus 237 Hp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkD-------G~IklwDGVS~rCv~--t~~~AH~gs 306 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKD-------GAIKLWDGVSNRCVR--TIGNAHGGS 306 (430)
T ss_pred CCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccC-------CcEEeeccccHHHHH--HHHhhcCCc
Confidence 3456778887755332222 3333323333 23 58999999987 457788877775432 232333332
Q ss_pred eE--EE--ECCEEEEEecccCCCCcCCeEEEEeCCCCceeec-cc--C-ccCccceeEEEECCEEEEE-eecCCcceEEE
Q 021759 157 DS--AV--MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLM-SD--G-MKEGWTGISIVLEGKLFVI-SEHGDCPMKQY 227 (308)
Q Consensus 157 ~~--~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~--~-~~~~~~~~~~~~~~~ly~~-gg~~~~~~~~y 227 (308)
.. ++ .++|..+-.|.+ ..+..|.+.++.--.. .. . -.+.....+++.+..=|++ -.....++..|
T Consensus 307 evcSa~Ftkn~kyiLsSG~D------S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW 380 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKD------STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW 380 (430)
T ss_pred eeeeEEEccCCeEEeecCCc------ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeec
Confidence 22 22 366766667765 4566666666543221 11 0 1111111222223333333 22225677888
Q ss_pred eCCCCc
Q 021759 228 NPDDDT 233 (308)
Q Consensus 228 d~~~~~ 233 (308)
|-.+..
T Consensus 381 daRtad 386 (430)
T KOG0640|consen 381 DARTAD 386 (430)
T ss_pred cccchh
Confidence 876654
No 201
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.98 E-value=98 Score=26.20 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=52.1
Q ss_pred CCeEEEEeCCCC--ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCC--ceeecccCccCcccee
Q 021759 130 MTAVECYDPESD--TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD--TWNLMSDGMKEGWTGI 205 (308)
Q Consensus 130 ~~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~ 205 (308)
...+...|+.++ .|+.+ -..|....+.++++. .|+|.+. ..++..+..++ -|....- ..-....
T Consensus 32 s~~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy~------g~lYfl~~~tGs~~w~f~~~--~~vk~~a 99 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCYS------GGLYFLCVKTGSQIWNFVIL--ETVKVRA 99 (354)
T ss_pred CceEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEcc------CcEEEEEecchhheeeeeeh--hhhccce
Confidence 466788899887 57654 234666667777777 5667765 35666666665 4765432 1111112
Q ss_pred EEEECCEEEEEeecCCcceEEEeCCCCc
Q 021759 206 SIVLEGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 206 ~~~~~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
.+..++.+.-.|-+ ...+++.|+.+..
T Consensus 100 ~~d~~~glIycgsh-d~~~yalD~~~~~ 126 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSH-DGNFYALDPKTYG 126 (354)
T ss_pred EEcCCCceEEEecC-CCcEEEecccccc
Confidence 23334443333444 4567788877654
No 202
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.73 E-value=15 Score=20.55 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=16.4
Q ss_pred EEECCEEEEEeecCCcceEEEeCCC
Q 021759 207 IVLEGKLFVISEHGDCPMKQYNPDD 231 (308)
Q Consensus 207 ~~~~~~ly~~gg~~~~~~~~yd~~~ 231 (308)
++.++.+|+.+. ...++++|+++
T Consensus 18 ~v~~g~vyv~~~--dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTG--DGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-T--TSEEEEEETT-
T ss_pred EEECCEEEEEcC--CCEEEEEeCCC
Confidence 566888888765 45899999874
No 203
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=61.29 E-value=1.5e+02 Score=28.10 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=72.5
Q ss_pred EEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEECC-EEEEEecccCCCCcCCeEEEEeCC
Q 021759 109 SGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDIN 187 (308)
Q Consensus 109 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~ 187 (308)
.+.+++.+.|.|..+ ..+-++|+.+.+- +..+.---..-....+++ ...+-|..+ ..+.++|+.
T Consensus 336 ~v~~~~~~lvsgs~d-------~~v~VW~~~~~~c--l~sl~gH~~~V~sl~~~~~~~~~Sgs~D------~~IkvWdl~ 400 (537)
T KOG0274|consen 336 CVQLDEPLLVSGSYD-------GTVKVWDPRTGKC--LKSLSGHTGRVYSLIVDSENRLLSGSLD------TTIKVWDLR 400 (537)
T ss_pred EEEecCCEEEEEecC-------ceEEEEEhhhcee--eeeecCCcceEEEEEecCcceEEeeeec------cceEeecCC
Confidence 344577777888776 4688888886543 222221101111224566 566666665 579999998
Q ss_pred CCceeecccCccCccce-eEEEECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCC
Q 021759 188 KDTWNLMSDGMKEGWTG-ISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 266 (308)
Q Consensus 188 ~~~W~~~~~~~~~~~~~-~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~ 266 (308)
+.. .-+.. +...... ......+++++-+.. ...+..+|.++++-...-.-+ . .....+...+...++..+.
T Consensus 401 ~~~-~c~~t-l~~h~~~v~~l~~~~~~Lvs~~a-D~~Ik~WD~~~~~~~~~~~~~-~----~~~v~~l~~~~~~il~s~~ 472 (537)
T KOG0274|consen 401 TKR-KCIHT-LQGHTSLVSSLLLRDNFLVSSSA-DGTIKLWDAEEGECLRTLEGR-H----VGGVSALALGKEEILCSSD 472 (537)
T ss_pred chh-hhhhh-hcCCcccccccccccceeEeccc-cccEEEeecccCceeeeeccC-C----cccEEEeecCcceEEEEec
Confidence 874 11111 1111111 123456777776665 557899999888866554322 1 2333334444455555553
No 204
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=60.85 E-value=6.8 Score=22.97 Aligned_cols=22 Identities=27% Similarity=0.105 Sum_probs=15.7
Q ss_pred CCCCchHHHHHhhhcCCccccc
Q 021759 27 IPGLPDEIGELCLLHVPYPYQA 48 (308)
Q Consensus 27 ~~~lp~~~~~~~l~~~p~~~~~ 48 (308)
|..||+|+...++..++.....
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~ 22 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLL 22 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHH
Confidence 4679999999999988755443
No 205
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=60.79 E-value=65 Score=31.14 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=32.7
Q ss_pred EECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceE
Q 021759 208 VLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNV 269 (308)
Q Consensus 208 ~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~ 269 (308)
..+|+.++.|+. ...|..||..+.+- +..+ -+.......-....+|.+++.||.++.
T Consensus 586 Sp~Gr~LaSg~e-d~~I~iWDl~~~~~--v~~l--~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 586 SPCGRYLASGDE-DGLIKIWDLANGSL--VKQL--KGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred cCCCceEeeccc-CCcEEEEEcCCCcc--hhhh--hcccCceeEEEEecCCCEEEecCCCCe
Confidence 335555555544 66899999988652 2211 111112222225679999999997663
No 206
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=60.31 E-value=46 Score=30.37 Aligned_cols=102 Identities=11% Similarity=0.138 Sum_probs=51.5
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcC-CcCcc-cceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAK-LRMGL-ARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT 190 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 190 (308)
.++|++-||.+ ..+++||.-... ..+.. +-+.. ...++..-++.-|+-+|++ ..+-.+|.+|+.
T Consensus 226 ~~hLlLS~gmD-------~~vklW~vy~~~-~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD------~~lKlwDtETG~ 291 (503)
T KOG0282|consen 226 KGHLLLSGGMD-------GLVKLWNVYDDR-RCLRTFKGHRKPVRDASFNNCGTSFLSASFD------RFLKLWDTETGQ 291 (503)
T ss_pred eeeEEEecCCC-------ceEEEEEEecCc-ceehhhhcchhhhhhhhccccCCeeeeeecc------eeeeeeccccce
Confidence 46788888876 456666654421 11111 11110 0111222356666767766 577888998887
Q ss_pred eeecccCccCccceeEEEE---CCEEEEEeecCCcceEEEeCCCC
Q 021759 191 WNLMSDGMKEGWTGISIVL---EGKLFVISEHGDCPMKQYNPDDD 232 (308)
Q Consensus 191 W~~~~~~~~~~~~~~~~~~---~~~ly~~gg~~~~~~~~yd~~~~ 232 (308)
-...- .....-.++.+ +.++|++||. ...|..||..++
T Consensus 292 ~~~~f---~~~~~~~cvkf~pd~~n~fl~G~s-d~ki~~wDiRs~ 332 (503)
T KOG0282|consen 292 VLSRF---HLDKVPTCVKFHPDNQNIFLVGGS-DKKIRQWDIRSG 332 (503)
T ss_pred EEEEE---ecCCCceeeecCCCCCcEEEEecC-CCcEEEEeccch
Confidence 53321 11111112211 3478888887 445555655444
No 207
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=59.84 E-value=1.1e+02 Score=26.14 Aligned_cols=153 Identities=12% Similarity=0.157 Sum_probs=79.7
Q ss_pred ccccCCCC-CCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEE-EECCEEEEEecc
Q 021759 94 WQLASPML-TPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA-VMGSKMYVTEGW 171 (308)
Q Consensus 94 W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~ 171 (308)
|..+.... .+-..-+.+.-+.+.+++|+.. .+..-|-.-++|+..-. +..|..+..+ ..+.+=+++|--
T Consensus 34 ~~~velp~~s~~l~ia~~~~g~~gwlVg~rg--------tiletdd~g~tw~qal~-~~gr~~f~sv~f~~~egw~vGe~ 104 (339)
T COG4447 34 WTDVELPTLSPTLDIAFTESGSHGWLVGGRG--------TILETDDGGITWAQALD-FLGRHAFHSVSFLGMEGWIVGEP 104 (339)
T ss_pred ceeeeccccCcccceeEeecCcceEEEcCcc--------eEEEecCCcccchhhhc-hhhhhheeeeeeecccccccCCc
Confidence 55544221 2333556666688999999984 23344555668977532 2235444443 334444444331
Q ss_pred cCCCCcCCeEEEEeCCCCceeeccc--CccCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccC
Q 021759 172 TWPFMFSPRGGVYDINKDTWNLMSD--GMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHR 249 (308)
Q Consensus 172 ~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 249 (308)
..+..-+-.-.+|.+++- .++..+....+.-+.+-|++|-.. .++.=+-.-..|+.+.+-..+ ....
T Consensus 105 -------sqll~T~DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~G--ail~T~DgGk~Wk~l~e~~v~--~~~~ 173 (339)
T COG4447 105 -------SQLLHTTDGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQG--AILKTTDGGKNWKALVEKAVG--LAVP 173 (339)
T ss_pred -------ceEEEecCCCcchhhchhhcCCCCCcceeEEecchhhhhhcccc--eEEEecCCcccHhHhcccccc--hhhh
Confidence 345555555668988764 223333333344445566666542 444444445689987652222 0122
Q ss_pred CeEEEEeCCEEEEEcCC
Q 021759 250 PFAVNGVEGKIYVVSSG 266 (308)
Q Consensus 250 ~~~~~~~~~~l~v~gG~ 266 (308)
.......||..+.+|-.
T Consensus 174 n~ia~s~dng~vaVg~r 190 (339)
T COG4447 174 NEIARSADNGYVAVGAR 190 (339)
T ss_pred hhhhhhccCCeEEEecC
Confidence 23334567777777654
No 208
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=59.66 E-value=1.3e+02 Score=26.82 Aligned_cols=63 Identities=16% Similarity=0.316 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE----ECCEEEEEecccCCCCcCCeEEEEeCCC
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV----MGSKMYVTEGWTWPFMFSPRGGVYDINK 188 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 188 (308)
..++++.|+.+ +-+-.|||+++.=..+..--....+...++ -+..+|+-|.++ +.+-.+|..+
T Consensus 311 ~~~Ll~~gssd-------r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D------~t~klWDvRS 377 (423)
T KOG0313|consen 311 LSKLLASGSSD-------RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD------NTVKLWDVRS 377 (423)
T ss_pred ccceeeecCCC-------CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC------CeEEEEEecc
Confidence 45677777765 567789998874221111111122222222 256777877766 5677777655
No 209
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=59.48 E-value=1.1e+02 Score=26.04 Aligned_cols=180 Identities=8% Similarity=0.044 Sum_probs=94.7
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCC---CC--CCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASP---ML--TPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDP 138 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~ 138 (308)
+..+|+-.-+ -..++.++.....|..-.+ +. .++..-.++..++...+-++.+ ..+.++|.
T Consensus 27 ~~~~l~sasr-------Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD-------~~lrlWDl 92 (315)
T KOG0279|consen 27 NSDILVSASR-------DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD-------GTLRLWDL 92 (315)
T ss_pred CCceEEEccc-------ceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc-------ceEEEEEe
Confidence 4456665433 2235556666555544222 11 1122223334477777777776 55777888
Q ss_pred CCCceeeCcCCcCcccceeE-EEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECC--EEEE
Q 021759 139 ESDTWTTAAKLRMGLARYDS-AVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEG--KLFV 215 (308)
Q Consensus 139 ~t~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~--~ly~ 215 (308)
.+.+=++. ...+.+.-.++ ...+++-.|-|..+ +++-.||...+.=..+.......+..+..+.-+ ..++
T Consensus 93 ~~g~~t~~-f~GH~~dVlsva~s~dn~qivSGSrD------kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 93 ATGESTRR-FVGHTKDVLSVAFSTDNRQIVSGSRD------KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred cCCcEEEE-EEecCCceEEEEecCCCceeecCCCc------ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 77532211 11112222222 23367777777766 688888877665433433232444444433333 4455
Q ss_pred EeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCce
Q 021759 216 ISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLN 268 (308)
Q Consensus 216 ~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~ 268 (308)
+.+.....+.++|+.+-+-... -.. .........+..||.+.+-||.+.
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~---~~g-h~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTT---FIG-HSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred EEccCCceEEEEccCCcchhhc---ccc-ccccEEEEEECCCCCEEecCCCCc
Confidence 4443366788999887663321 222 222333444677999999988544
No 210
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=57.69 E-value=23 Score=24.38 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=33.3
Q ss_pred cCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCC
Q 021759 177 FSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPD 230 (308)
Q Consensus 177 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~ 230 (308)
....+..|||.+++.+.+... .....+.+..-++..+++.......+.+|-++
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred CCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 345799999999998776542 22333444555777666665556677777653
No 211
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=57.39 E-value=1.7e+02 Score=27.39 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=65.7
Q ss_pred eEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEe--CCEEEEEcCCCCCCCCCCCeEE
Q 021759 57 ACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVE 134 (308)
Q Consensus 57 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 134 (308)
.+.++..++...++||.++ .+++|...-..-.+..-+...|.--+.+.+ ++..++.|-. .+.+.
T Consensus 447 s~vAv~~~~~~vaVGG~Dg-------kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-------~rkvv 512 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDG-------KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-------SRKVV 512 (603)
T ss_pred ceEEEcCCCCEEEEecccc-------eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-------CCcEE
Confidence 3344444778888888732 377887776655555555566666666666 4554444433 47788
Q ss_pred EEeCCCCceeeCcCCc--CcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCC
Q 021759 135 CYDPESDTWTTAAKLR--MGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINK 188 (308)
Q Consensus 135 ~yd~~t~~W~~~~~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 188 (308)
.||..++.- ....+. .+|-...+=.-+++++.-|+.+ ..+.+|+...
T Consensus 513 ~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD------t~Viiysv~k 561 (603)
T KOG0318|consen 513 LYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD------TNVIIYSVKK 561 (603)
T ss_pred EEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEecccc------ceEEEEEccC
Confidence 898877643 222221 1222222222377888888876 6888887653
No 212
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=56.89 E-value=1.5e+02 Score=26.76 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=41.1
Q ss_pred EECCEEEEEecccCCCCcCCeEEEEeCCCCceee-cccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCc
Q 021759 160 VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNL-MSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 160 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
-.+|.+..-||.+ ...-++|+.++.-.- +.. ....-.+....-||...+.|+. .+.+.++|+...+
T Consensus 312 ~~DGSL~~tGGlD------~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~-Dnt~kVWDLR~r~ 378 (459)
T KOG0272|consen 312 QPDGSLAATGGLD------SLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSS-DNTCKVWDLRMRS 378 (459)
T ss_pred cCCCceeeccCcc------chhheeecccCcEEEEecc-cccceeeEeECCCceEEeecCC-CCcEEEeeecccc
Confidence 3589999999987 455678887765432 221 2222223334457777777775 5677888886554
No 213
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=56.41 E-value=29 Score=31.62 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=58.8
Q ss_pred ECCEEEEEecccCCCCcCCeEEEEeCCCC-ce-eecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEec
Q 021759 161 MGSKMYVTEGWTWPFMFSPRGGVYDINKD-TW-NLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 161 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W-~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~ 238 (308)
..+++++-||.+ ..+.+||.-.+ .. +.... ...+-...+....+.-++..++ ...+..+|++|++-..--
T Consensus 225 ~~~hLlLS~gmD------~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sf-D~~lKlwDtETG~~~~~f 296 (503)
T KOG0282|consen 225 KKGHLLLSGGMD------GLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSASF-DRFLKLWDTETGQVLSRF 296 (503)
T ss_pred ceeeEEEecCCC------ceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeeec-ceeeeeeccccceEEEEE
Confidence 367788888876 45666654331 11 00000 0000001112234445555555 557889999999854321
Q ss_pred CCCCCCccccCCeEE-EEeCC-EEEEEcCCceE----eEEEeee-ecCCCceeeeEEe
Q 021759 239 GDKFPCEVMHRPFAV-NGVEG-KIYVVSSGLNV----AIGRVYE-EQNGGISAEWKVM 289 (308)
Q Consensus 239 ~~~~~~~~~~~~~~~-~~~~~-~l~v~gG~~~~----~~~~~~~-~~~~~~~~~W~~~ 289 (308)
... .....+ ...++ .+|++||.+.- ++++... ..||.....|..+
T Consensus 297 --~~~----~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i 348 (503)
T KOG0282|consen 297 --HLD----KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDI 348 (503)
T ss_pred --ecC----CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeee
Confidence 222 111222 22345 89999996542 3333222 4588888888765
No 214
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=55.61 E-value=2e+02 Score=27.70 Aligned_cols=112 Identities=9% Similarity=0.111 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCC-ceeeCcCCcCcccceeEEE---ECCEEEEEecccCCCCcCCeEEEEeCCC
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESD-TWTTAAKLRMGLARYDSAV---MGSKMYVTEGWTWPFMFSPRGGVYDINK 188 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 188 (308)
++.+.++|-.. .-.+++..+.-+ +-+.+..+|..+...+... -+++++++. ....+++.++.++
T Consensus 393 dg~~Ia~st~~------~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~~ 460 (691)
T KOG2048|consen 393 DGNLIAISTVS------RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELET 460 (691)
T ss_pred CCCEEEEeecc------ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe------cccceeEEEEecC
Confidence 55666665542 123444444333 3345667777765544433 267787775 1235788899888
Q ss_pred CceeecccCccCccce---eE-EEE-CCEEEEEeecCCcceEEEeCCCCceEEec
Q 021759 189 DTWNLMSDGMKEGWTG---IS-IVL-EGKLFVISEHGDCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 189 ~~W~~~~~~~~~~~~~---~~-~~~-~~~ly~~gg~~~~~~~~yd~~~~~W~~~~ 238 (308)
.+.+++.+..++.... .. +.- ++-|-+++. ...+.+||+++.+-..+.
T Consensus 461 ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t--~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 461 PSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST--RGQIFVYNLETLESHLLK 513 (691)
T ss_pred cchhhhhccccccCCCcceeEEEcCCCCEEEEEec--cceEEEEEcccceeecch
Confidence 8887776533332222 12 222 444666664 458999999998766554
No 215
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=54.39 E-value=1.5e+02 Score=25.84 Aligned_cols=171 Identities=14% Similarity=0.175 Sum_probs=74.4
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEE---EEEcCCCCCCCCCCCeEEEEeCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKI---MAVGGTGANINETMTAVECYDPES 140 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i---yv~GG~~~~~~~~~~~~~~yd~~t 140 (308)
++...+.||. -..+.+||..++. ++..+..+-..-++..+.... .++.|.+ -..+-+++ .
T Consensus 52 s~~~~aSGss-------DetI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~shLlS~sd------DG~i~iw~--~ 114 (362)
T KOG0294|consen 52 SGPYVASGSS-------DETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSHLLSGSD------DGHIIIWR--V 114 (362)
T ss_pred cceeEeccCC-------CCcEEEEeccchh--hhcceeccccceEEEEecCCcchhheeeecC------CCcEEEEE--c
Confidence 5554444443 1257899998764 333333332223333333222 4454443 13456666 4
Q ss_pred CceeeCcCCcC--cccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEee
Q 021759 141 DTWTTAAKLRM--GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISE 218 (308)
Q Consensus 141 ~~W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg 218 (308)
+.|..+..+.. .+..+-++=-.+||-+.-|.+ ..+-.+|+.++.=..+.. +..........-.|.-|++++
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D------~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD------QVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCC------ceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEe
Confidence 56877654432 122222222256655543332 233344444433222221 111111111222444455555
Q ss_pred cCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCC
Q 021759 219 HGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 266 (308)
Q Consensus 219 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~ 266 (308)
.+.+.+|.+++.+--.. ...| .+...+...++.-+++||.
T Consensus 188 --~~~i~i~q~d~A~v~~~--i~~~----~r~l~~~~l~~~~L~vG~d 227 (362)
T KOG0294|consen 188 --RNKIDIYQLDNASVFRE--IENP----KRILCATFLDGSELLVGGD 227 (362)
T ss_pred --ccEEEEEecccHhHhhh--hhcc----ccceeeeecCCceEEEecC
Confidence 44788887766542211 1222 2334444455555555653
No 216
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=53.73 E-value=1.9e+02 Score=26.82 Aligned_cols=140 Identities=15% Similarity=0.184 Sum_probs=73.4
Q ss_pred ceeEEEeCCCCCccccCC-CCCCCc-----------ce-EEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcC
Q 021759 82 QSTIMYRATTNQWQLASP-MLTPRS-----------FF-ASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAK 148 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~-~~~~r~-----------~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~ 148 (308)
.++|.|||.+.+-+.+.- +|..|. +. -.+..+|..+++-.. ...++.++-.+--..++.
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR--------GkaFi~~~~~~~~iqv~~ 358 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR--------GKAFIMRPWDGYSIQVGK 358 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec--------CcEEEECCCCCeeEEcCC
Confidence 468999999988766542 233221 11 122333443333222 124555543322122221
Q ss_pred CcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEe
Q 021759 149 LRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYN 228 (308)
Q Consensus 149 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd 228 (308)
. .+..+.-...+++-.++|-.++ +.+.+||..+..-+.+...+ ..-....+..+||..+++.. .-.+|.+|
T Consensus 359 ~--~~VrY~r~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e~~l-g~I~av~vs~dGK~~vvaNd-r~el~vid 429 (668)
T COG4946 359 K--GGVRYRRIQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIEKDL-GNIEAVKVSPDGKKVVVAND-RFELWVID 429 (668)
T ss_pred C--CceEEEEEccCCcceEEeccCC-----ceEEEEecCCceEEEeeCCc-cceEEEEEcCCCcEEEEEcC-ceEEEEEE
Confidence 1 1222222233455667776654 57899999988776665411 22222234557776666543 55788999
Q ss_pred CCCCceEEec
Q 021759 229 PDDDTWRYVG 238 (308)
Q Consensus 229 ~~~~~W~~~~ 238 (308)
.+++.=+.+.
T Consensus 430 idngnv~~id 439 (668)
T COG4946 430 IDNGNVRLID 439 (668)
T ss_pred ecCCCeeEec
Confidence 9888766554
No 217
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=53.20 E-value=2e+02 Score=27.16 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=60.6
Q ss_pred CEEEEEeccCCCCCCCCceeEEEeCCCCCccccCC--CCCC-CcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCC
Q 021759 65 GKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASP--MLTP-RSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD 141 (308)
Q Consensus 65 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 141 (308)
..|+.+.-..+....+.-+.-+|+...++-+++.- .|.+ ....++......-+++|-.+ .++..||..++
T Consensus 219 ~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D-------gSiiLyD~~~~ 291 (545)
T PF11768_consen 219 YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED-------GSIILYDTTRG 291 (545)
T ss_pred cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecC-------CeEEEEEcCCC
Confidence 34555543222223445566678887776655542 2222 11222223356677888776 67999999777
Q ss_pred ceeeCcCCcCcccceeEEE--ECCEEEEEecccCCCCcCCeEEEEeCCCCc
Q 021759 142 TWTTAAKLRMGLARYDSAV--MGSKMYVTEGWTWPFMFSPRGGVYDINKDT 190 (308)
Q Consensus 142 ~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 190 (308)
.=+.+ .. ..-..... .+|.|+++|+.. ..+++||..-+.
T Consensus 292 ~t~~~-ka---~~~P~~iaWHp~gai~~V~s~q------GelQ~FD~ALsp 332 (545)
T PF11768_consen 292 VTLLA-KA---EFIPTLIAWHPDGAIFVVGSEQ------GELQCFDMALSP 332 (545)
T ss_pred eeeee-ee---cccceEEEEcCCCcEEEEEcCC------ceEEEEEeecCc
Confidence 42221 11 11122222 278899998864 489999987654
No 218
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=52.27 E-value=1.2e+02 Score=25.90 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=34.6
Q ss_pred EEECCEEEEEecccCCCC-cCCeEEEEeCC-CCceeecccCccCcccee-EEEECCEEEEEeec
Q 021759 159 AVMGSKMYVTEGWTWPFM-FSPRGGVYDIN-KDTWNLMSDGMKEGWTGI-SIVLEGKLFVISEH 219 (308)
Q Consensus 159 ~~~~~~iyv~GG~~~~~~-~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~-~~~~~~~ly~~gg~ 219 (308)
...+|+.+++|-...... ..+.+..|.-. .+.|+.++..+.-...-. .+.+++.| ++||.
T Consensus 33 F~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~gel-ifGGv 95 (298)
T PF08950_consen 33 FEYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGEL-IFGGV 95 (298)
T ss_dssp EEETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEE-EEEEE
T ss_pred eeECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEE-EEeeE
Confidence 457899999988765444 45567777665 788999886332222222 35678886 45665
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=51.86 E-value=1.6e+02 Score=25.62 Aligned_cols=98 Identities=12% Similarity=0.168 Sum_probs=54.5
Q ss_pred CCeEEEEeCCCCc-eeeCcCCcCcccceeEEE---ECCEEEEEecccCCCCcCCeEEEEeC-CCCceeecccCccCccce
Q 021759 130 MTAVECYDPESDT-WTTAAKLRMGLARYDSAV---MGSKMYVTEGWTWPFMFSPRGGVYDI-NKDTWNLMSDGMKEGWTG 204 (308)
Q Consensus 130 ~~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~-~~~~W~~~~~~~~~~~~~ 204 (308)
.+++++|....+. |+....+...-..-..+- ..++|.. ++.+ +..+++.. ...+|......+...+..
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvt-cs~d------rnayVw~~~~~~~WkptlvLlRiNrAA 103 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVT-CSHD------RNAYVWTQPSGGTWKPTLVLLRINRAA 103 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeE-ccCC------CCccccccCCCCeeccceeEEEeccce
Confidence 3689999998888 988765543222111211 2345543 4544 46677777 778898776544444444
Q ss_pred eEE--EECCEEEEEeecC-CcceEEEeCCCCce
Q 021759 205 ISI--VLEGKLFVISEHG-DCPMKQYNPDDDTW 234 (308)
Q Consensus 205 ~~~--~~~~~ly~~gg~~-~~~~~~yd~~~~~W 234 (308)
.++ .-+...|++|+.. ...+..|.-+++=|
T Consensus 104 t~V~WsP~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 104 TCVKWSPKENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred eeEeecCcCceEEeccCccEEEEEEEeccccee
Confidence 443 2244445555443 33455555544444
No 220
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=51.55 E-value=1.7e+02 Score=25.75 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=88.1
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE--ECCEEEEEecccCCCCcCCeEEEEeCCCC-
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV--MGSKMYVTEGWTWPFMFSPRGGVYDINKD- 189 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~- 189 (308)
+..+|++...+ +..--..+.+|+.+++-+.+...+.+-..++-+. -+++..+..-+. ...+-+|-.+.+
T Consensus 51 ~~~LY~v~~~~---~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~-----~g~v~v~p~~~dG 122 (346)
T COG2706 51 QRHLYVVNEPG---EEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH-----SGSVSVYPLQADG 122 (346)
T ss_pred CCEEEEEEecC---CcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc-----CceEEEEEcccCC
Confidence 45688886653 2333456777777788777754443333323333 344333333332 146777766553
Q ss_pred c-eeeccc-------CccC--ccceeEE--EECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeC
Q 021759 190 T-WNLMSD-------GMKE--GWTGISI--VLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVE 257 (308)
Q Consensus 190 ~-W~~~~~-------~~~~--~~~~~~~--~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 257 (308)
. |..+.. +.++ ..+.+.+ .-++++++.--...+.+..|+.+.++.+......++ +...-.|-+..-+
T Consensus 123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn 201 (346)
T COG2706 123 SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPN 201 (346)
T ss_pred ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCC
Confidence 2 322211 1111 1122333 335655544333367899999998887766553332 1123335555556
Q ss_pred CE-EEEEcCCceEeEEEeeeecCCCceeeeEEe----cCCCcccccc
Q 021759 258 GK-IYVVSSGLNVAIGRVYEEQNGGISAEWKVM----TAPRAFKDLA 299 (308)
Q Consensus 258 ~~-l~v~gG~~~~~~~~~~~~~~~~~~~~W~~~----~~p~~~~~~~ 299 (308)
++ .|++.- -..++..+.||+...+-+.+ ..|..|.+..
T Consensus 202 ~k~aY~v~E----L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 202 GKYAYLVNE----LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred CcEEEEEec----cCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 65 666664 22334444577765555544 2355554443
No 221
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=50.66 E-value=1.5e+02 Score=24.77 Aligned_cols=99 Identities=13% Similarity=0.248 Sum_probs=51.3
Q ss_pred CCCEEEEEeccCCCCCCCCceeEEEeCCCC-CccccC--CCCCCCcceEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeC
Q 021759 63 RQGKLFVLGGMRSDTETPMQSTIMYRATTN-QWQLAS--PMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDP 138 (308)
Q Consensus 63 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~--~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~ 138 (308)
.++.|+++-... .. . ...+.+....+ +|.+.. .+|.+.....++.. +++++++.... .....-.+.+-.-
T Consensus 168 ~dG~l~~~~R~~-~~-~--~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~r~~l~l~~S~D 241 (275)
T PF13088_consen 168 PDGRLLAVFRTE-GN-D--DIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNP--DGRSNLSLYVSED 241 (275)
T ss_dssp TTSEEEEEEEEC-SS-T--EEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECS--STSEEEEEEEECT
T ss_pred CCCcEEEEEEcc-CC-C--cEEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECC--CCCCceEEEEEeC
Confidence 477888886442 11 1 33344444433 898755 35666655555554 67888887732 1111122222222
Q ss_pred CCCceeeCcCCcCcc----cceeEEEE-CCEEEE
Q 021759 139 ESDTWTTAAKLRMGL----ARYDSAVM-GSKMYV 167 (308)
Q Consensus 139 ~t~~W~~~~~~~~~r----~~~~~~~~-~~~iyv 167 (308)
...+|.....+.... .+..++.. +++|||
T Consensus 242 ~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 242 GGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp TCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 356898764443322 33444554 678886
No 222
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=50.48 E-value=1.4e+02 Score=28.55 Aligned_cols=95 Identities=14% Similarity=0.230 Sum_probs=51.6
Q ss_pred CeEEEEeCCCCc-eeeCcCCcCcccceeEEE---ECCEEEEEecccCCCCcCCeEEEEeCCCCcee------eccc-Ccc
Q 021759 131 TAVECYDPESDT-WTTAAKLRMGLARYDSAV---MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN------LMSD-GMK 199 (308)
Q Consensus 131 ~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~------~~~~-~~~ 199 (308)
..+-.+|+..+- |- +..+..-+.+-.+.+ .++.+++-||.+ ..|++||..+..=+ .+.. ...
T Consensus 95 tTVK~W~~~~~~~~c-~stir~H~DYVkcla~~ak~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFC-MSTIRTHKDYVKCLAYIAKNNELVASGGLD------RKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred ceEEEeecccCcchh-HhhhhcccchheeeeecccCceeEEecCCC------ccEEEEEccCcchhhhhhccccccccCC
Confidence 445666665543 31 223333344444433 367788889987 68899998866321 1211 011
Q ss_pred -Cccc-eeEEEEC--CEEEEEeecCCcceEEEeCCCCc
Q 021759 200 -EGWT-GISIVLE--GKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 200 -~~~~-~~~~~~~--~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
.+.. -.+.+.| +.+++-||. ...+..||+.+.+
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGgt-ek~lr~wDprt~~ 204 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGGT-EKDLRLWDPRTCK 204 (735)
T ss_pred CCCccceeeeecCCcceEEEecCc-ccceEEecccccc
Confidence 1111 1122333 336666665 7789999998765
No 223
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=50.40 E-value=2e+02 Score=26.29 Aligned_cols=107 Identities=9% Similarity=-0.082 Sum_probs=60.7
Q ss_pred CceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 81 MQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 81 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
..++|.+|...++-.++......-...+...-+.+|+..-.. .....++++|+..++=+++..-..... +-...
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr-----~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~S 334 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDR-----GGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWS 334 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCC-----CCCcceEEECCCCCceeEeeccCCCCc-CccCC
Confidence 567899999888744444433222233333445555555332 234589999999887666543222222 22333
Q ss_pred ECCEEEEEecccCCCCcCCeEEEEeCCCCc-eeeccc
Q 021759 161 MGSKMYVTEGWTWPFMFSPRGGVYDINKDT-WNLMSD 196 (308)
Q Consensus 161 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~ 196 (308)
-+++.+++-+..+ +. ..+..+|+.++. |+.+..
T Consensus 335 pdG~~i~~~~~~~-g~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 335 PDGDKIVFESSSG-GQ--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCCCEEEEEeccC-Cc--eeeEEeccCCCCcEEEccc
Confidence 4555555544321 11 578999998876 887765
No 224
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=50.38 E-value=2.1e+02 Score=26.49 Aligned_cols=151 Identities=11% Similarity=0.088 Sum_probs=76.1
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCce
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW 143 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 143 (308)
..+||.+.-..+ ...++.-|..-+.-++..... -++..-+..+|+-.||.- ..+++.|||.+..-
T Consensus 235 ~~RvYFlsD~eG-----~GnlYSvdldGkDlrrHTnFt--dYY~R~~nsDGkrIvFq~--------~GdIylydP~td~l 299 (668)
T COG4946 235 GERVYFLSDHEG-----VGNLYSVDLDGKDLRRHTNFT--DYYPRNANSDGKRIVFQN--------AGDIYLYDPETDSL 299 (668)
T ss_pred cceEEEEecccC-----ccceEEeccCCchhhhcCCch--hccccccCCCCcEEEEec--------CCcEEEeCCCcCcc
Confidence 778888864432 334565666555444444322 122222344555555522 13489999999987
Q ss_pred eeCc-CCcCccc-----------cee-EEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEEC
Q 021759 144 TTAA-KLRMGLA-----------RYD-SAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLE 210 (308)
Q Consensus 144 ~~~~-~~~~~r~-----------~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 210 (308)
+++. .+|..|. ..- -++.+|..+++-.. ..++++++..+---++..... -+... ...+
T Consensus 300 ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-------GkaFi~~~~~~~~iqv~~~~~-VrY~r-~~~~ 370 (668)
T COG4946 300 EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-------GKAFIMRPWDGYSIQVGKKGG-VRYRR-IQVD 370 (668)
T ss_pred eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-------CcEEEECCCCCeeEEcCCCCc-eEEEE-EccC
Confidence 7763 2333321 111 12233333332221 245666654333223332111 11111 2335
Q ss_pred CEEEEEeecCCcceEEEeCCCCceEEec
Q 021759 211 GKLFVISEHGDCPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 211 ~~ly~~gg~~~~~~~~yd~~~~~W~~~~ 238 (308)
++-.++|-.+...+.+||.++.+-.++.
T Consensus 371 ~e~~vigt~dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 371 PEGDVIGTNDGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred CcceEEeccCCceEEEEecCCceEEEee
Confidence 5566777666778999999998866654
No 225
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=50.38 E-value=1.7e+02 Score=25.34 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=39.2
Q ss_pred CEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCE---EEEEeecCCcceEEEeCCCCceEEecC
Q 021759 163 SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK---LFVISEHGDCPMKQYNPDDDTWRYVGG 239 (308)
Q Consensus 163 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~---ly~~gg~~~~~~~~yd~~~~~W~~~~~ 239 (308)
.++|+ |+.+ ..+..||+.++.-..+.. ..+..-.+..+++- +++.|.. ...+.-+|+.... .+..
T Consensus 85 skVf~-g~~D------k~~k~wDL~S~Q~~~v~~--Hd~pvkt~~wv~~~~~~cl~TGSW-DKTlKfWD~R~~~--pv~t 152 (347)
T KOG0647|consen 85 SKVFS-GGCD------KQAKLWDLASGQVSQVAA--HDAPVKTCHWVPGMNYQCLVTGSW-DKTLKFWDTRSSN--PVAT 152 (347)
T ss_pred ceEEe-eccC------CceEEEEccCCCeeeeee--cccceeEEEEecCCCcceeEeccc-ccceeecccCCCC--eeee
Confidence 34554 6655 578999999997766653 22222222233333 4455554 5567777876443 4444
Q ss_pred CCCC
Q 021759 240 DKFP 243 (308)
Q Consensus 240 ~~~~ 243 (308)
+.+|
T Consensus 153 ~~LP 156 (347)
T KOG0647|consen 153 LQLP 156 (347)
T ss_pred eecc
Confidence 5566
No 226
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=50.30 E-value=2.4e+02 Score=27.14 Aligned_cols=67 Identities=18% Similarity=0.384 Sum_probs=41.2
Q ss_pred cCCCEEEEEeccCCCCCCCCceeEEEeCCCCCc------ccc--CCCC-CCCcc-eEEEEe-CCEEEEEcCCCCCCCCCC
Q 021759 62 PRQGKLFVLGGMRSDTETPMQSTIMYRATTNQW------QLA--SPML-TPRSF-FASGNV-NGKIMAVGGTGANINETM 130 (308)
Q Consensus 62 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W------~~~--~~~~-~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~ 130 (308)
.-++.+++.||.+. .++.||.+++.= ..+ .+++ .++.. ++++.- .+.++|-||..
T Consensus 127 ak~~~lvaSgGLD~-------~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte------- 192 (735)
T KOG0308|consen 127 AKNNELVASGGLDR-------KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE------- 192 (735)
T ss_pred ccCceeEEecCCCc-------cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc-------
Confidence 34778889998832 467777776532 222 2234 34432 233322 35688888875
Q ss_pred CeEEEEeCCCCc
Q 021759 131 TAVECYDPESDT 142 (308)
Q Consensus 131 ~~~~~yd~~t~~ 142 (308)
.++..|||.+++
T Consensus 193 k~lr~wDprt~~ 204 (735)
T KOG0308|consen 193 KDLRLWDPRTCK 204 (735)
T ss_pred cceEEecccccc
Confidence 778999999874
No 227
>PRK01742 tolB translocation protein TolB; Provisional
Probab=50.08 E-value=2e+02 Score=26.15 Aligned_cols=118 Identities=10% Similarity=-0.006 Sum_probs=57.8
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcceEEEEeCC-EEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNG-KIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
.++|.+|..++...++..-...-..... .-++ +|+.....+ ....++.+|..+..-+.+.. .. ......
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~w-SpDG~~i~f~s~~~-----g~~~I~~~~~~~~~~~~l~~---~~-~~~~~S 341 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSW-SPDGQSILFTSDRS-----GSPQVYRMSASGGGASLVGG---RG-YSAQIS 341 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEE-CCCCCEEEEEECCC-----CCceEEEEECCCCCeEEecC---CC-CCccCC
Confidence 3588899887776655432211111111 1244 455443332 12467777776554333321 11 111222
Q ss_pred ECCE-EEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeec
Q 021759 161 MGSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEH 219 (308)
Q Consensus 161 ~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 219 (308)
-+++ |++.++ +.+..+|+.++.++.+.... ........-+++.++++..
T Consensus 342 pDG~~ia~~~~--------~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 342 ADGKTLVMING--------DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCCCEEEEEcC--------CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEc
Confidence 2444 544433 35778999988887654321 1122234456776666543
No 228
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=49.46 E-value=1.7e+02 Score=25.22 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=79.8
Q ss_pred CeEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEEC
Q 021759 131 TAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLE 210 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 210 (308)
..+..||..+.+-.+.-..+.--...+.........+.+-. ...+++..+++.+++--+.=+-....-....+.-.
T Consensus 36 Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt----k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~ 111 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST----KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK 111 (311)
T ss_pred CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC----CCCCceEEEEeecCceEEEcCCCCceEEEEEecCC
Confidence 57899999888665543332222223333444444444432 11257888888888764432212222222223334
Q ss_pred CEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCce-EeEEEeee--------ec-CC
Q 021759 211 GKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLN-VAIGRVYE--------EQ-NG 280 (308)
Q Consensus 211 ~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~-~~~~~~~~--------~~-~~ 280 (308)
+..++-+.. ...+..||+...+-.-+- .+. ....++.--.|-|+.++-+.+ ....++.. .. -+
T Consensus 112 ~d~FlS~S~-D~tvrLWDlR~~~cqg~l--~~~----~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~ 184 (311)
T KOG1446|consen 112 DDTFLSSSL-DKTVRLWDLRVKKCQGLL--NLS----GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD 184 (311)
T ss_pred CCeEEeccc-CCeEEeeEecCCCCceEE--ecC----CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC
Confidence 566676665 557889998866654432 222 222333334566776665443 12222111 11 23
Q ss_pred CceeeeEEecCCCccc
Q 021759 281 GISAEWKVMTAPRAFK 296 (308)
Q Consensus 281 ~~~~~W~~~~~p~~~~ 296 (308)
+...+|+.+.--+..+
T Consensus 185 ~~~~ew~~l~FS~dGK 200 (311)
T KOG1446|consen 185 NDEAEWTDLEFSPDGK 200 (311)
T ss_pred CCccceeeeEEcCCCC
Confidence 5567999886544444
No 229
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=48.17 E-value=3.2e+02 Score=27.90 Aligned_cols=151 Identities=16% Similarity=0.265 Sum_probs=88.7
Q ss_pred CEEEEEe-ccC-CCCC-CCCceeEEEeCCC-CCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCC
Q 021759 65 GKLFVLG-GMR-SDTE-TPMQSTIMYRATT-NQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPES 140 (308)
Q Consensus 65 ~~iyv~G-G~~-~~~~-~~~~~~~~yd~~~-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t 140 (308)
+..|++| |.. ++.. .....+.+|.... ++-+.++.+...-.-.+++.+++++.+.=| ..+..|+..+
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In---------~~vrLye~t~ 857 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGIN---------QSVRLYEWTT 857 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecC---------cEEEEEEccc
Confidence 5566666 322 2221 2234455555544 677777777777777888889999765422 4577887655
Q ss_pred C-ceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeec
Q 021759 141 D-TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEH 219 (308)
Q Consensus 141 ~-~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 219 (308)
. +-+.......+-..-..-+.++.|+|.. -...-++..|+...+...+++....+.|-..+..+++..|+.+-.
T Consensus 858 ~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD-----lm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~ 932 (1096)
T KOG1897|consen 858 ERELRIECNISNPIIALDLQVKGDEIAVGD-----LMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAEN 932 (1096)
T ss_pred cceehhhhcccCCeEEEEEEecCcEEEEee-----ccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecc
Confidence 5 2211112222222222335588888852 233357888999888898888756667777776778887775433
Q ss_pred C-CcceEEEeC
Q 021759 220 G-DCPMKQYNP 229 (308)
Q Consensus 220 ~-~~~~~~yd~ 229 (308)
. .-.+..+|.
T Consensus 933 ~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 933 SGNLFTVRKDS 943 (1096)
T ss_pred cccEEEEEecC
Confidence 2 223445553
No 230
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=46.89 E-value=1.4e+02 Score=29.15 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=50.5
Q ss_pred EEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE-CCEEEEEecccCCCCcCCeEEEEeC
Q 021759 108 ASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDI 186 (308)
Q Consensus 108 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~ 186 (308)
+++..++++.++.|.+ .++-++|..|.+-.+ .++.. +-+++..+ +++..+.|+.+ ..+++||.
T Consensus 378 sl~vS~d~~~~~Sga~-------~SikiWn~~t~kciR--Ti~~~-y~l~~~Fvpgd~~Iv~G~k~------Gel~vfdl 441 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAG-------ESIKIWNRDTLKCIR--TITCG-YILASKFVPGDRYIVLGTKN------GELQVFDL 441 (888)
T ss_pred EEEeecCceeeeecCC-------CcEEEEEccCcceeE--Eeccc-cEEEEEecCCCceEEEeccC------CceEEEEe
Confidence 4455567777776654 457777877654322 23333 33334333 56666667765 47899998
Q ss_pred CCCce-eecccCccCccceeEEEECCEEEEEeec
Q 021759 187 NKDTW-NLMSDGMKEGWTGISIVLEGKLFVISEH 219 (308)
Q Consensus 187 ~~~~W-~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 219 (308)
.+..- +.++. ........+...+++=++.|+.
T Consensus 442 aS~~l~Eti~A-HdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 442 ASASLVETIRA-HDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred ehhhhhhhhhc-cccceeeeeecCCCCceEEecC
Confidence 76542 21221 1112222223446666666665
No 231
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=45.66 E-value=2e+02 Score=24.82 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=66.7
Q ss_pred eEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcC----CcCcccceeEE
Q 021759 84 TIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAK----LRMGLARYDSA 159 (308)
Q Consensus 84 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~----~~~~r~~~~~~ 159 (308)
+.++|.-+..=.+.-+||..-...++-.-.++....||.+ +..-+|+..+..=+...+ ++.-..+.+++
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd-------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC 151 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD-------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCC 151 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC-------ceeEEEecccccccccceeeeeecCccceeEEE
Confidence 5556654322122223433322222222368888999997 778899988653232222 22222333333
Q ss_pred EE--CCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccce--eE--EE-ECCEEEEEeecCCcceEEEeCCCC
Q 021759 160 VM--GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTG--IS--IV-LEGKLFVISEHGDCPMKQYNPDDD 232 (308)
Q Consensus 160 ~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~--~~--~~-~~~~ly~~gg~~~~~~~~yd~~~~ 232 (308)
.+ |+.|..-.|- .+...+|.++..=...-. +..+ .+ .. .+.+.|+-||. ......+|....
T Consensus 152 ~f~dD~~ilT~SGD-------~TCalWDie~g~~~~~f~----GH~gDV~slsl~p~~~ntFvSg~c-D~~aklWD~R~~ 219 (343)
T KOG0286|consen 152 RFLDDNHILTGSGD-------MTCALWDIETGQQTQVFH----GHTGDVMSLSLSPSDGNTFVSGGC-DKSAKLWDVRSG 219 (343)
T ss_pred EEcCCCceEecCCC-------ceEEEEEcccceEEEEec----CCcccEEEEecCCCCCCeEEeccc-ccceeeeeccCc
Confidence 33 5566554442 467788888765321110 0000 01 11 17788888886 345566676665
Q ss_pred ce
Q 021759 233 TW 234 (308)
Q Consensus 233 ~W 234 (308)
.-
T Consensus 220 ~c 221 (343)
T KOG0286|consen 220 QC 221 (343)
T ss_pred ce
Confidence 43
No 232
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=45.52 E-value=3.8e+02 Score=28.08 Aligned_cols=121 Identities=13% Similarity=0.171 Sum_probs=62.9
Q ss_pred CcceEEEEeCCEEEEEcCCCCC------C-----CCCCCeEEEEeCCCCceeeCcCCcCcccceeEE----EE-------
Q 021759 104 RSFFASGNVNGKIMAVGGTGAN------I-----NETMTAVECYDPESDTWTTAAKLRMGLARYDSA----VM------- 161 (308)
Q Consensus 104 r~~~~~~~~~~~iyv~GG~~~~------~-----~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~----~~------- 161 (308)
+.++-.+....+++.+++.+.. . ......+...+|. +|+.++..+.+-..|..+ .+
T Consensus 966 ~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~--sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~ 1043 (1366)
T KOG1896|consen 966 KVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPE--SWEVIDKIEFQENEHVLHMKYVILDDEETTK 1043 (1366)
T ss_pred eEEEEEEeccceeeecccccccccccccccccccccccceeEEecCC--ccccccccccCccceeeEEEEEEEEeccccc
Confidence 3444444455666666665311 0 1123456677777 466666555554444432 22
Q ss_pred CCEEEEEeccc----CCCCcCCeEEEEeCCC-----------CceeecccCccCccceeEEEECCEEEEEeecCCcceEE
Q 021759 162 GSKMYVTEGWT----WPFMFSPRGGVYDINK-----------DTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQ 226 (308)
Q Consensus 162 ~~~iyv~GG~~----~~~~~~~~~~~yd~~~-----------~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~ 226 (308)
+.+=|++-|.. ++-.....+++||.-. ++-+++-.....+....+|.++|+|.+.-|. ++.+
T Consensus 1044 ~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~Gq---KI~v 1120 (1366)
T KOG1896|consen 1044 GKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQ---KIIV 1120 (1366)
T ss_pred CCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCc---EEEE
Confidence 23567776653 2334456788887532 1122222112233334446778888776654 6777
Q ss_pred EeC
Q 021759 227 YNP 229 (308)
Q Consensus 227 yd~ 229 (308)
++.
T Consensus 1121 ~~l 1123 (1366)
T KOG1896|consen 1121 RKL 1123 (1366)
T ss_pred EEe
Confidence 766
No 233
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=43.39 E-value=1.8e+02 Score=27.04 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=41.0
Q ss_pred cceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEE-CCEEEEEecccCCCCcCCeEEE
Q 021759 105 SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGV 183 (308)
Q Consensus 105 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 183 (308)
.+-+....+..|+|-=|++ ..+.+||..++.-... +.......+++.. +|.+.++|-.. ..+..
T Consensus 212 ~gicfspsne~l~vsVG~D-------kki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~L~aG~s~------G~~i~ 276 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYD-------KKINIYDIRSQASTDR--LTYSHPLSTVAFSECGTYLCAGNSK------GELIA 276 (673)
T ss_pred CcceecCCccceEEEeccc-------ceEEEeecccccccce--eeecCCcceeeecCCceEEEeecCC------ceEEE
Confidence 3445556788999988887 7899999986643322 1111111222333 45565655443 46777
Q ss_pred EeCCCC
Q 021759 184 YDINKD 189 (308)
Q Consensus 184 yd~~~~ 189 (308)
||....
T Consensus 277 YD~R~~ 282 (673)
T KOG4378|consen 277 YDMRST 282 (673)
T ss_pred EecccC
Confidence 877543
No 234
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=42.78 E-value=2.9e+02 Score=25.85 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcC-cccceeEE-EECCEEEEEecccCCCCcCCeEEEEeCCCCc
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRM-GLARYDSA-VMGSKMYVTEGWTWPFMFSPRGGVYDINKDT 190 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 190 (308)
+++-+++||.. ..+.++|..+-+=+.-..++. +...++++ ..|.++-.....+ ..|.+||++..+
T Consensus 476 dgrtLivGGea-------stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd------GnI~vwDLhnq~ 542 (705)
T KOG0639|consen 476 DGRTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD------GNIAVWDLHNQT 542 (705)
T ss_pred CCceEEecccc-------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC------CcEEEEEcccce
Confidence 88999999984 667788887655433333433 12233333 3466665544333 468899998775
Q ss_pred e-eecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCC
Q 021759 191 W-NLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDD 231 (308)
Q Consensus 191 W-~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~ 231 (308)
- ..+.. ...+-.+.-+.-+|.=+-.||- .+.+.+||+.+
T Consensus 543 ~VrqfqG-htDGascIdis~dGtklWTGGl-DntvRcWDlre 582 (705)
T KOG0639|consen 543 LVRQFQG-HTDGASCIDISKDGTKLWTGGL-DNTVRCWDLRE 582 (705)
T ss_pred eeecccC-CCCCceeEEecCCCceeecCCC-ccceeehhhhh
Confidence 3 22332 2222222112223433334665 44666666543
No 235
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=42.52 E-value=1.8e+02 Score=23.31 Aligned_cols=84 Identities=10% Similarity=-0.002 Sum_probs=47.2
Q ss_pred CCCCceeEEEeCCCCCccccCCCCCC-Ccce-EEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCccc
Q 021759 78 ETPMQSTIMYRATTNQWQLASPMLTP-RSFF-ASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLA 154 (308)
Q Consensus 78 ~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 154 (308)
+.....+|.+|...+.|..+.--+.. .... -+.-+ +..|.|+=|...+.-..-..+++|++.++.-+.+-+......
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkq 163 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKKQ 163 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccce
Confidence 35578899999999988655322221 2222 22333 455555544321122234679999999998887765544333
Q ss_pred ceeEEEE
Q 021759 155 RYDSAVM 161 (308)
Q Consensus 155 ~~~~~~~ 161 (308)
....+..
T Consensus 164 QVis~e~ 170 (200)
T PF15525_consen 164 QVISAEK 170 (200)
T ss_pred eEEEEEE
Confidence 3333333
No 236
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=41.85 E-value=3.1e+02 Score=26.02 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=74.2
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCC-EEEEEcCCCCCCCCCCCeEEEEeCCCCc
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNG-KIMAVGGTGANINETMTAVECYDPESDT 142 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 142 (308)
++.+.|.|..+ ..+-+||+.+++....-.-...|. ....+++ ..++-|+.+ ..+.++|+.+..
T Consensus 340 ~~~~lvsgs~d-------~~v~VW~~~~~~cl~sl~gH~~~V--~sl~~~~~~~~~Sgs~D-------~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 340 DEPLLVSGSYD-------GTVKVWDPRTGKCLKSLSGHTGRV--YSLIVDSENRLLSGSLD-------TTIKVWDLRTKR 403 (537)
T ss_pred cCCEEEEEecC-------ceEEEEEhhhceeeeeecCCcceE--EEEEecCcceEEeeeec-------cceEeecCCchh
Confidence 55556665441 246777877554322211111111 1123455 555555554 567888887764
Q ss_pred eeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEE-EECCEEEEEeecCC
Q 021759 143 WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISI-VLEGKLFVISEHGD 221 (308)
Q Consensus 143 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~ly~~gg~~~ 221 (308)
+.+-.+......-....+.+++++-+..+ ..+.++|..++.-...-... ...+..+ .......+..+. .
T Consensus 404 -~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD------~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~~~~il~s~~-~ 473 (537)
T KOG0274|consen 404 -KCIHTLQGHTSLVSSLLLRDNFLVSSSAD------GTIKLWDAEEGECLRTLEGR--HVGGVSALALGKEEILCSSD-D 473 (537)
T ss_pred -hhhhhhcCCcccccccccccceeEecccc------ccEEEeecccCceeeeeccC--CcccEEEeecCcceEEEEec-C
Confidence 22222222221112223467777776665 47888998887765443211 1122222 232244455544 5
Q ss_pred cceEEEeCCCCce
Q 021759 222 CPMKQYNPDDDTW 234 (308)
Q Consensus 222 ~~~~~yd~~~~~W 234 (308)
..+..||..+.+-
T Consensus 474 ~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 474 GSVKLWDLRSGTL 486 (537)
T ss_pred CeeEEEecccCch
Confidence 6788888877654
No 237
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=41.76 E-value=2.4e+02 Score=24.60 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=47.6
Q ss_pred CeEEEEeCCCCceeeCcCCcCcccceeE--EEE--CCEEEEEecccCCCCcCCeEEEEeCCCCceee-cccCccCcccee
Q 021759 131 TAVECYDPESDTWTTAAKLRMGLARYDS--AVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNL-MSDGMKEGWTGI 205 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~--~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~ 205 (308)
+.+..||..|-+- .++..|.....-+. +-+ .++||+-|..+ ..|-.||-.++.... +...........
T Consensus 238 p~~rlYdv~T~Qc-fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD------G~IklwDGVS~rCv~t~~~AH~gsevcS 310 (430)
T KOG0640|consen 238 PTLRLYDVNTYQC-FVSANPDDQHTGAITQVRYSSTGSLYVTASKD------GAIKLWDGVSNRCVRTIGNAHGGSEVCS 310 (430)
T ss_pred CceeEEeccceeE-eeecCcccccccceeEEEecCCccEEEEeccC------CcEEeeccccHHHHHHHHhhcCCceeee
Confidence 5577888876532 22333322111111 222 58999999877 367788877665432 221111111111
Q ss_pred E-EEECCEEEEEeecCCcceEEEeCCCCc
Q 021759 206 S-IVLEGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 206 ~-~~~~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
+ ..-|+|..+..|.+ ..+..|...++.
T Consensus 311 a~Ftkn~kyiLsSG~D-S~vkLWEi~t~R 338 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKD-STVKLWEISTGR 338 (430)
T ss_pred EEEccCCeEEeecCCc-ceeeeeeecCCc
Confidence 2 22366666666653 344555555554
No 238
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=40.49 E-value=2.2e+02 Score=26.67 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=54.2
Q ss_pred cccceeEEEE--CCEEEEEecccCCCCcCCeEEEEeCCCCceeecccC-------ccCccceeEEEECCEEEEEeecCCc
Q 021759 152 GLARYDSAVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDG-------MKEGWTGISIVLEGKLFVISEHGDC 222 (308)
Q Consensus 152 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-------~~~~~~~~~~~~~~~ly~~gg~~~~ 222 (308)
.|...+.|.+ +++.+..|..+ .+|+.|+. ..|..-+.. ......+..+..++++++--|. ..
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~D------GSIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-D~ 386 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLD------GSIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-DD 386 (641)
T ss_pred cccCceeeecCCCcchhhhcccC------Cceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccC-CC
Confidence 4555555555 67775544444 47888886 344433221 1112223335668887776665 45
Q ss_pred ceEEEeCCC-----CceEEecCCCCCCccccCCeEEEEeCCEEEEEcC
Q 021759 223 PMKQYNPDD-----DTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSS 265 (308)
Q Consensus 223 ~~~~yd~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG 265 (308)
.+.+||+.. +.|+-+.. +.+ ..-+++.-+++|++.|-
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t-~~~-----~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPT-PFP-----GTDCCFSPDDKLILTGT 428 (641)
T ss_pred ceeeeeccccccchhhhcCCCc-cCC-----CCccccCCCceEEEecc
Confidence 677777754 34555432 122 22345666888887775
No 239
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=39.92 E-value=1.4e+02 Score=28.77 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=37.7
Q ss_pred CeEEEEeCCCCceeeC--cCCcC-cccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCc
Q 021759 131 TAVECYDPESDTWTTA--AKLRM-GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT 190 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~--~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 190 (308)
..+.+|+|.+..= .+ .+-|. .|..-..-++++++.++-|.+... .+.+.+||-++-.
T Consensus 742 g~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S--eRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS--ERQVQMYDAQTLD 801 (1012)
T ss_pred ceEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEEEecccccc--hhhhhhhhhhhcc
Confidence 4578999987742 22 22233 344445567899999999987433 3678889887654
No 240
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=39.05 E-value=2.2e+02 Score=27.97 Aligned_cols=98 Identities=8% Similarity=0.016 Sum_probs=53.2
Q ss_pred EEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEe
Q 021759 158 SAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYV 237 (308)
Q Consensus 158 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~ 237 (308)
.++.++.+.++.|-+ .++-+++..+.+.-.. +.....-.+.++.|..|++-|.....+..||..+..--+.
T Consensus 379 l~vS~d~~~~~Sga~------~SikiWn~~t~kciRT---i~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et 449 (888)
T KOG0306|consen 379 LCVSSDSILLASGAG------ESIKIWNRDTLKCIRT---ITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVET 449 (888)
T ss_pred EEeecCceeeeecCC------CcEEEEEccCcceeEE---eccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh
Confidence 345566666665543 4778888776554221 2333444445566666666566577899999876542221
Q ss_pred cCCCCCCccccCCeEEEEeCCEEEEEcCCce
Q 021759 238 GGDKFPCEVMHRPFAVNGVEGKIYVVSSGLN 268 (308)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~ 268 (308)
..-.-. ..+.-....|++=++.||.++
T Consensus 450 i~AHdg----aIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 450 IRAHDG----AIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred hhcccc----ceeeeeecCCCCceEEecCCc
Confidence 100011 222223445677777777555
No 241
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.91 E-value=3.3e+02 Score=25.44 Aligned_cols=137 Identities=12% Similarity=0.053 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceee-CcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCce
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTT-AAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTW 191 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 191 (308)
+++.+.-||.+ +.+.+||..+..+.. +.....+....+-+.....|...||-.. -..+..+|+.+++=
T Consensus 312 d~~~lASGgnD-------N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~----D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 312 DGNQLASGGND-------NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA----DRCIKFWNTNTGAR 380 (484)
T ss_pred CCCeeccCCCc-------cceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCc----ccEEEEEEcCCCcE
Confidence 45555666665 778888873332211 1111111122222234677888877432 25677788776542
Q ss_pred eecccCccCccceeEE---EECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCc
Q 021759 192 NLMSDGMKEGWTGISI---VLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGL 267 (308)
Q Consensus 192 ~~~~~~~~~~~~~~~~---~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~ 267 (308)
... ...+-.-... -..+.|...-|+..+.+.+|+..+.+ .+.. +.....|..+-+...|++-++.|+.+
T Consensus 381 i~~---vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~--l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 381 IDS---VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAE--LLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred ecc---cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeee--ecCCcceeEEEEECCCCCEEEEeccc
Confidence 111 1111111111 12456777778777777777766532 2222 11122355555566676666666533
No 242
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.89 E-value=4.7e+02 Score=27.20 Aligned_cols=93 Identities=13% Similarity=0.222 Sum_probs=49.4
Q ss_pred CCEEEEEecccCCCCcCCeEEEEeCCCCc---------eeecccCccCccceeEE----EECCEEEEEeecCCcceEEEe
Q 021759 162 GSKMYVTEGWTWPFMFSPRGGVYDINKDT---------WNLMSDGMKEGWTGISI----VLEGKLFVISEHGDCPMKQYN 228 (308)
Q Consensus 162 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---------W~~~~~~~~~~~~~~~~----~~~~~ly~~gg~~~~~~~~yd 228 (308)
|..+.+.+-.+ ..|-+|+.-.+. |..+...++..+...++ -..|+||+.|+ ...|.++|
T Consensus 1122 D~aLlLtas~d------GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--~r~IRIWD 1193 (1387)
T KOG1517|consen 1122 DDALLLTASSD------GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--VRSIRIWD 1193 (1387)
T ss_pred chhheeeeccC------ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC--eeEEEEEe
Confidence 34455555544 245556554443 55555545555444432 23688999887 45899999
Q ss_pred CCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEc
Q 021759 229 PDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVS 264 (308)
Q Consensus 229 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~g 264 (308)
.+..+- +..+|..-.......+.-.+.+.+++.|
T Consensus 1194 a~~E~~--~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1194 AHKEQV--VADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ccccee--EeecccCCCccceeecccccCCceEEEe
Confidence 987663 3333443111111112223456677666
No 243
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=38.75 E-value=3.3e+02 Score=25.44 Aligned_cols=207 Identities=13% Similarity=0.149 Sum_probs=102.7
Q ss_pred ceEEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCc-ce--EEEEe-CCEEEEEcCCCCCCCCCCC
Q 021759 56 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRS-FF--ASGNV-NGKIMAVGGTGANINETMT 131 (308)
Q Consensus 56 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~--~~~~~-~~~iyv~GG~~~~~~~~~~ 131 (308)
+.+..-+.+..+.+.-|. ..++.+++..+...+-..+-..|. .+ +++.. ++.+ +.|-. -.
T Consensus 204 ~~a~FHPtd~nliit~Gk--------~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS-------~G 267 (626)
T KOG2106|consen 204 FLATFHPTDPNLIITCGK--------GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDS-------GG 267 (626)
T ss_pred EEEEeccCCCcEEEEeCC--------ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecC-------Cc
Confidence 444444555566666544 246778888887655544433322 22 22222 3333 34433 35
Q ss_pred eEEEEeCCCCceeeCcCCcCcccceeEEEE-CCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEE-
Q 021759 132 AVECYDPESDTWTTAAKLRMGLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL- 209 (308)
Q Consensus 132 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~- 209 (308)
.+.+|++.++.-++... ..+-.-++++.+ +|+|.- ||.+ +.+..+|-.-++-+++. .|......=++.
T Consensus 268 ~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKD------Rki~~Wd~~y~k~r~~e--lPe~~G~iRtv~e 337 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKD------RKIILWDDNYRKLRETE--LPEQFGPIRTVAE 337 (626)
T ss_pred eEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCcc------ceEEecccccccccccc--CchhcCCeeEEec
Confidence 68899998887655433 344444556665 566666 8877 67778873323332222 333322222333
Q ss_pred -CCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEE-eCCEEEEEcCCceEeEEEeeeecCCCceeeeE
Q 021759 210 -EGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNG-VEGKIYVVSSGLNVAIGRVYEEQNGGISAEWK 287 (308)
Q Consensus 210 -~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~ 287 (308)
.+.||+ |...+.+..=++++.. +.+.. ... +...+++. .+...|+..|.+.. +.- .+..+.+|+
T Consensus 338 ~~~di~v--GTtrN~iL~Gt~~~~f-~~~v~-gh~----delwgla~hps~~q~~T~gqdk~----v~l--W~~~k~~wt 403 (626)
T KOG2106|consen 338 GKGDILV--GTTRNFILQGTLENGF-TLTVQ-GHG----DELWGLATHPSKNQLLTCGQDKH----VRL--WNDHKLEWT 403 (626)
T ss_pred CCCcEEE--eeccceEEEeeecCCc-eEEEE-ecc----cceeeEEcCCChhheeeccCcce----EEE--ccCCceeEE
Confidence 233554 3434455554444332 22211 111 22233333 34555665553322 222 336667887
Q ss_pred Ee-cCCCcccccccce
Q 021759 288 VM-TAPRAFKDLAPSS 302 (308)
Q Consensus 288 ~~-~~p~~~~~~~~~~ 302 (308)
.+ ..|-.-++|.+++
T Consensus 404 ~~~~d~~~~~~fhpsg 419 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG 419 (626)
T ss_pred EEecCceeEeeccCcc
Confidence 54 5565555555555
No 244
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=38.42 E-value=2.9e+02 Score=24.70 Aligned_cols=140 Identities=18% Similarity=0.212 Sum_probs=77.3
Q ss_pred eCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE--ECCEEEEEecccCCCCcCCeEEEEeCCCC
Q 021759 112 VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV--MGSKMYVTEGWTWPFMFSPRGGVYDINKD 189 (308)
Q Consensus 112 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 189 (308)
.+.++|+..+. .+.+.++|..+++-. ...+.++.-+..++ .++++||..... ..+.+.++|..++
T Consensus 84 ~~~~vyv~~~~-------~~~v~vid~~~~~~~--~~~~vG~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t~ 150 (381)
T COG3391 84 AGNKVYVTTGD-------SNTVSVIDTATNTVL--GSIPVGLGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAATN 150 (381)
T ss_pred CCCeEEEecCC-------CCeEEEEcCccccee--eEeeeccCCceEEECCCCCEEEEEeccc----CCceEEEEeCCCC
Confidence 46789998765 377899997666432 22233322222322 356899985521 2378999999988
Q ss_pred ceeecccCccCccceeEEE-ECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEE--eCCEEEEEcCC
Q 021759 190 TWNLMSDGMKEGWTGISIV-LEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNG--VEGKIYVVSSG 266 (308)
Q Consensus 190 ~W~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~v~gG~ 266 (308)
+-....+ -.....+.++. .++++|+... ....+..+|+++..-.. ...............+++ .+.++|+.-..
T Consensus 151 ~~~~~~~-vG~~P~~~a~~p~g~~vyv~~~-~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 151 KVTATIP-VGNTPTGVAVDPDGNKVYVTNS-DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred eEEEEEe-cCCCcceEEECCCCCeEEEEec-CCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEecc
Confidence 7544321 11111333333 3555898873 36689999988775432 211100001133334433 35568888765
Q ss_pred c
Q 021759 267 L 267 (308)
Q Consensus 267 ~ 267 (308)
.
T Consensus 228 ~ 228 (381)
T COG3391 228 S 228 (381)
T ss_pred C
Confidence 4
No 245
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=37.93 E-value=3e+02 Score=24.65 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=86.0
Q ss_pred EEEEcCCCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEE--EeCCEEEEEcCCCCCCCCCCCeEEE
Q 021759 58 CTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASG--NVNGKIMAVGGTGANINETMTAVEC 135 (308)
Q Consensus 58 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~ 135 (308)
.++-..++++|+..+. .+.+.++|..+++-... .+..+.-+.++ ..++.+|+..... ..+.+.+
T Consensus 79 i~v~~~~~~vyv~~~~-------~~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~vYV~n~~~-----~~~~vsv 144 (381)
T COG3391 79 VAVNPAGNKVYVTTGD-------SNTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKYVYVANAGN-----GNNTVSV 144 (381)
T ss_pred eeeCCCCCeEEEecCC-------CCeEEEEcCcccceeeE--eeeccCCceEEECCCCCEEEEEeccc-----CCceEEE
Confidence 3443447789999644 56688888665543222 22222323333 3467999986531 3578999
Q ss_pred EeCCCCceeeCcCCcCcccceeEE--EECCEEEEEecccCCCCcCCeEEEEeCCCCceeeccc-----CccCccceeEEE
Q 021759 136 YDPESDTWTTAAKLRMGLARYDSA--VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD-----GMKEGWTGISIV 208 (308)
Q Consensus 136 yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-----~~~~~~~~~~~~ 208 (308)
+|..+++-... .+....-...+ ..++++|+.-. ..+.+..+|+++..-.. .. ..........+.
T Consensus 145 id~~t~~~~~~--~~vG~~P~~~a~~p~g~~vyv~~~------~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~ 215 (381)
T COG3391 145 IDAATNKVTAT--IPVGNTPTGVAVDPDGNKVYVTNS------DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVD 215 (381)
T ss_pred EeCCCCeEEEE--EecCCCcceEEECCCCCeEEEEec------CCCeEEEEeCCCcceec-cccccccccCCCCceEEEC
Confidence 99998864443 22211112222 23567999852 22689999988775332 11 111222222333
Q ss_pred E-CCEEEEEeecC-CcceEEEeCCCCc
Q 021759 209 L-EGKLFVISEHG-DCPMKQYNPDDDT 233 (308)
Q Consensus 209 ~-~~~ly~~gg~~-~~~~~~yd~~~~~ 233 (308)
. +.++|+.-... ...+..+|..++.
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCCce
Confidence 3 45588876542 2578888888865
No 246
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=37.41 E-value=3.1e+02 Score=24.67 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=63.1
Q ss_pred eeEEEeCCCCCccccCCCCCCCcce--EEEEe--CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeE
Q 021759 83 STIMYRATTNQWQLASPMLTPRSFF--ASGNV--NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDS 158 (308)
Q Consensus 83 ~~~~yd~~~~~W~~~~~~~~~r~~~--~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 158 (308)
.+-.+|+.+.+ |.....++.+ -++.+ +++.++-|..+ ..+-+|||++++ ....+++.-+..-.+
T Consensus 138 TvR~WD~~TeT----p~~t~KgH~~WVlcvawsPDgk~iASG~~d-------g~I~lwdpktg~-~~g~~l~gH~K~It~ 205 (480)
T KOG0271|consen 138 TVRLWDLDTET----PLFTCKGHKNWVLCVAWSPDGKKIASGSKD-------GSIRLWDPKTGQ-QIGRALRGHKKWITA 205 (480)
T ss_pred eEEeeccCCCC----cceeecCCccEEEEEEECCCcchhhccccC-------CeEEEecCCCCC-cccccccCcccceeE
Confidence 45566776533 2222333322 22233 78887777765 678999999875 122223322222222
Q ss_pred EEE-------CCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCC
Q 021759 159 AVM-------GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDD 231 (308)
Q Consensus 159 ~~~-------~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~ 231 (308)
... +.+.++-++.+ +++.++|...++-...-. .....-.++.-+|.=|+..|.....|.+|+...
T Consensus 206 Lawep~hl~p~~r~las~skD------g~vrIWd~~~~~~~~~ls--gHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 206 LAWEPLHLVPPCRRLASSSKD------GSVRIWDTKLGTCVRTLS--GHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred EeecccccCCCccceecccCC------CCEEEEEccCceEEEEec--cCccceEEEEEcCCceEEecCCCceEEEEEccc
Confidence 211 23444444433 467778776655433221 111112233445554454454455666666544
No 247
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=37.39 E-value=4.7e+02 Score=26.79 Aligned_cols=167 Identities=13% Similarity=0.109 Sum_probs=94.6
Q ss_pred CceeEEEeCCCCCccccCCCCCCCc--ceEEE--Ee--C-CEEEEEcCCC--C-CCCCCCCeEEEEeCCC-CceeeCcCC
Q 021759 81 MQSTIMYRATTNQWQLASPMLTPRS--FFASG--NV--N-GKIMAVGGTG--A-NINETMTAVECYDPES-DTWTTAAKL 149 (308)
Q Consensus 81 ~~~~~~yd~~~~~W~~~~~~~~~r~--~~~~~--~~--~-~~iyv~GG~~--~-~~~~~~~~~~~yd~~t-~~W~~~~~~ 149 (308)
+.-+-+||.++-+ .+......+. ..++. .+ + +..|++|-.- + ........+.+|.... ++-+.++.+
T Consensus 749 ~s~l~vlD~nTf~--vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~ 826 (1096)
T KOG1897|consen 749 VSFLRVLDQNTFE--VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET 826 (1096)
T ss_pred EEEEEEecCCcee--EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee
Confidence 3445567776543 3333332222 22222 22 2 5666666431 1 1223345566666655 677777766
Q ss_pred cCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCcccee--E---EEECCEEEEEeecCCcce
Q 021759 150 RMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI--S---IVLEGKLFVISEHGDCPM 224 (308)
Q Consensus 150 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~--~---~~~~~~ly~~gg~~~~~~ 224 (308)
...-.-.+.+.+++|+.+. .+ ..+..|+..+++ ++. .......+ + -+.++.|++..-...-.+
T Consensus 827 ~v~Gav~aL~~fngkllA~--In------~~vrLye~t~~~--eLr--~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 827 VVKGAVYALVEFNGKLLAG--IN------QSVRLYEWTTER--ELR--IECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeccceeehhhhCCeEEEe--cC------cEEEEEEccccc--eeh--hhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 6665666777889998663 32 578888755541 111 11111111 1 244677877665546678
Q ss_pred EEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcC
Q 021759 225 KQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSS 265 (308)
Q Consensus 225 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG 265 (308)
..|+...+....++.--.| +.-.++..+++..|+.+-
T Consensus 895 l~y~~~eg~f~evArD~~p----~Wmtaveil~~d~ylgae 931 (1096)
T KOG1897|consen 895 LQYKGDEGNFEEVARDYNP----NWMTAVEILDDDTYLGAE 931 (1096)
T ss_pred EEEeccCCceEEeehhhCc----cceeeEEEecCceEEeec
Confidence 9999999999998854444 444455667888887664
No 248
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=37.10 E-value=3.2e+02 Score=24.80 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=48.1
Q ss_pred CCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEecCCC
Q 021759 162 GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDK 241 (308)
Q Consensus 162 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~ 241 (308)
+|+...-+.++ .+.-.||..+++=-....-...+-+..++-.+|.|.+.||.+ ..-.++|+.++.-.-.
T Consensus 272 sG~~L~TasfD------~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD-~~~RvWDlRtgr~im~---- 340 (459)
T KOG0272|consen 272 SGKFLGTASFD------STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD-SLGRVWDLRTGRCIMF---- 340 (459)
T ss_pred CCceeeecccc------cchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc-chhheeecccCcEEEE----
Confidence 67766665554 344556666654211111122222333345689999999974 3446777777664322
Q ss_pred CCCccccCCeEE-EEeCCEEEEEcCCce
Q 021759 242 FPCEVMHRPFAV-NGVEGKIYVVSSGLN 268 (308)
Q Consensus 242 ~~~~~~~~~~~~-~~~~~~l~v~gG~~~ 268 (308)
+.. ....-+++ ..-+|..+.-||.++
T Consensus 341 L~g-H~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 341 LAG-HIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred ecc-cccceeeEeECCCceEEeecCCCC
Confidence 110 11222333 334666666666554
No 249
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=36.30 E-value=66 Score=16.62 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=16.0
Q ss_pred EECCEEEEEeecCCcceEEEeCCCCc
Q 021759 208 VLEGKLFVISEHGDCPMKQYNPDDDT 233 (308)
Q Consensus 208 ~~~~~ly~~gg~~~~~~~~yd~~~~~ 233 (308)
..++.+|+... ...++.+|.++++
T Consensus 4 ~~~~~v~~~~~--~g~l~a~d~~~G~ 27 (33)
T smart00564 4 LSDGTVYVGST--DGTLYALDAKTGE 27 (33)
T ss_pred EECCEEEEEcC--CCEEEEEEcccCc
Confidence 34566776543 4588999987764
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=35.44 E-value=2.3e+02 Score=22.54 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=45.3
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCce
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW 143 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 143 (308)
++++.++-|.. + ..+..||.+ ...+..++......-.-.-+|+..++||.+ + ....++.||..+ .
T Consensus 71 g~~favi~g~~-----~-~~v~lyd~~---~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~--n--~~G~l~~wd~~~--~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSM-----P-AKVTLYDVK---GKKIFSFGTQPRNTISWSPDGRFLVLAGFG--N--LNGDLEFWDVRK--K 135 (194)
T ss_pred CCEEEEEEccC-----C-cccEEEcCc---ccEeEeecCCCceEEEECCCCCEEEEEEcc--C--CCcEEEEEECCC--C
Confidence 55666664531 1 267889986 333333332212221112268888888874 1 235689999874 4
Q ss_pred eeCcCCcCcccceeEEEECCEEEEEec
Q 021759 144 TTAAKLRMGLARYDSAVMGSKMYVTEG 170 (308)
Q Consensus 144 ~~~~~~~~~r~~~~~~~~~~~iyv~GG 170 (308)
+.+.....+......-.-+|+.++...
T Consensus 136 ~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 136 KKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 444433333211111122566555443
No 251
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=35.32 E-value=2.5e+02 Score=24.57 Aligned_cols=75 Identities=9% Similarity=0.053 Sum_probs=44.6
Q ss_pred CeEEEEeCCCCceeeC-cCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEE
Q 021759 131 TAVECYDPESDTWTTA-AKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL 209 (308)
Q Consensus 131 ~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 209 (308)
+.-.+.|..+++-..- -.||+ +--.+++++|+.--.. ..+..+|+++++.+.+.. .+....+.+ ..
T Consensus 185 ~gG~vidv~s~evl~~GLsmPh-----SPRWhdgrLwvldsgt------Gev~~vD~~~G~~e~Va~-vpG~~rGL~-f~ 251 (335)
T TIGR03032 185 DGGCVIDIPSGEVVASGLSMPH-----SPRWYQGKLWLLNSGR------GELGYVDPQAGKFQPVAF-LPGFTRGLA-FA 251 (335)
T ss_pred CCeEEEEeCCCCEEEcCccCCc-----CCcEeCCeEEEEECCC------CEEEEEcCCCCcEEEEEE-CCCCCcccc-ee
Confidence 3344567777743211 12333 2335689999985433 589999999999988865 333333333 22
Q ss_pred CCEEEEEeec
Q 021759 210 EGKLFVISEH 219 (308)
Q Consensus 210 ~~~ly~~gg~ 219 (308)
|.+.++|-.
T Consensus 252 -G~llvVgmS 260 (335)
T TIGR03032 252 -GDFAFVGLS 260 (335)
T ss_pred -CCEEEEEec
Confidence 777777643
No 252
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.46 E-value=3.4e+02 Score=24.21 Aligned_cols=92 Identities=11% Similarity=0.170 Sum_probs=52.5
Q ss_pred EEEEEecccCCCCcCCeEEEEeCCCCceee-cccCccCccceeEEEE-CCEEEEEeecCCcceEEEeCCCCceEEecCCC
Q 021759 164 KMYVTEGWTWPFMFSPRGGVYDINKDTWNL-MSDGMKEGWTGISIVL-EGKLFVISEHGDCPMKQYNPDDDTWRYVGGDK 241 (308)
Q Consensus 164 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~ 241 (308)
.+...|.++ ..+-.+|..+...-. +.. ...+....+.. +|+ |++.-.+..++.+||..+.+....-. .
T Consensus 305 ~~l~s~SrD------ktIk~wdv~tg~cL~tL~g--hdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~-a 374 (406)
T KOG0295|consen 305 QVLGSGSRD------KTIKIWDVSTGMCLFTLVG--HDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTLE-A 374 (406)
T ss_pred cEEEeeccc------ceEEEEeccCCeEEEEEec--ccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeeccC-C
Confidence 344445544 577788887774311 111 12222222333 355 55555557789999999988755432 2
Q ss_pred CCCccccCCeEEEEeCCEEEEEcCCceE
Q 021759 242 FPCEVMHRPFAVNGVEGKIYVVSSGLNV 269 (308)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~l~v~gG~~~~ 269 (308)
.+ .+-..+....+..||+.|+...
T Consensus 375 h~----hfvt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 375 HE----HFVTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred Cc----ceeEEEecCCCCceEEeccccc
Confidence 22 3444556667888999886543
No 253
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.45 E-value=2.7e+02 Score=23.31 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=21.6
Q ss_pred eEEEECCEEEEEeecCCcceEEEeCCCCceE
Q 021759 205 ISIVLEGKLFVISEHGDCPMKQYNPDDDTWR 235 (308)
Q Consensus 205 ~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~ 235 (308)
.++-.+|+||+.-- +...+.++||.+++--
T Consensus 217 m~ID~eG~L~Va~~-ng~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 217 MTIDTEGNLYVATF-NGGTVQKVDPTTGKIL 246 (310)
T ss_pred ceEccCCcEEEEEe-cCcEEEEECCCCCcEE
Confidence 34444788998753 2558999999999843
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=33.58 E-value=4.2e+02 Score=25.03 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=53.0
Q ss_pred CeEEEEeCCCC--ceeeCcCCcCcccceeE-EEECCEEEEEecccCCCCcCCeEEEEeCCCCc----eeecccCccCccc
Q 021759 131 TAVECYDPESD--TWTTAAKLRMGLARYDS-AVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT----WNLMSDGMKEGWT 203 (308)
Q Consensus 131 ~~~~~yd~~t~--~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~----W~~~~~~~~~~~~ 203 (308)
.+++.|+...+ +|+........+..... ..--+.||-.|+- ..+..+++++.. |...++ ...
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad-------~~v~~~~~~~~~~~~~~~~~~~----~~~ 148 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD-------LKVVYILEKEKVIIRIWKEQKP----LVS 148 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCc-------eeEEEEecccceeeeeeccCCC----ccc
Confidence 56889998887 45544333333222221 2223567877663 356677776653 433322 223
Q ss_pred eeEEEECCEEEEEeecCCcceEEEeCCCCce
Q 021759 204 GISIVLEGKLFVISEHGDCPMKQYNPDDDTW 234 (308)
Q Consensus 204 ~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W 234 (308)
+-+..-|+++.+.+++ .+..||.++.+-
T Consensus 149 sl~is~D~~~l~~as~---~ik~~~~~~kev 176 (541)
T KOG4547|consen 149 SLCISPDGKILLTASR---QIKVLDIETKEV 176 (541)
T ss_pred eEEEcCCCCEEEeccc---eEEEEEccCceE
Confidence 3345568888888865 789999988764
No 255
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=33.07 E-value=2.5e+02 Score=27.79 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCCceeeCcC--CcCcccceeEEEEC---CEEEEEecccCCCCcCCeEEEE------eCCCCceeecccCc
Q 021759 130 MTAVECYDPESDTWTTAAK--LRMGLARYDSAVMG---SKMYVTEGWTWPFMFSPRGGVY------DINKDTWNLMSDGM 198 (308)
Q Consensus 130 ~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~y------d~~~~~W~~~~~~~ 198 (308)
.-++|.||+.+.+|..... +|..-...+++... ....+..|.++. -.+|++ .+....|.-.....
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~----~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGD----FKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCe----EEEEEEecccccCcCccceEEeeeec
Confidence 4568999999999987653 34433333333321 113343333211 367777 56666786544312
Q ss_pred cCccceeE--EEECCEEEEEeecCCcceEEEeCCC
Q 021759 199 KEGWTGIS--IVLEGKLFVISEHGDCPMKQYNPDD 231 (308)
Q Consensus 199 ~~~~~~~~--~~~~~~ly~~gg~~~~~~~~yd~~~ 231 (308)
-......+ ..-+|.+..++- .+.+-.||..+
T Consensus 507 y~k~~i~a~~fs~dGslla~s~--~~~Itiwd~~~ 539 (792)
T KOG1963|consen 507 YHKTPITALCFSQDGSLLAVSF--DDTITIWDYDT 539 (792)
T ss_pred cccCcccchhhcCCCcEEEEec--CCEEEEecCCC
Confidence 22222222 334677777765 44777777766
No 256
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=32.96 E-value=1.3e+02 Score=29.14 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=28.6
Q ss_pred CCEEEEEecccCCCCcCCeEEEEeCCCCce-eecccCccCccceeEEEECCEEEEEeecC
Q 021759 162 GSKMYVTEGWTWPFMFSPRGGVYDINKDTW-NLMSDGMKEGWTGISIVLEGKLFVISEHG 220 (308)
Q Consensus 162 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~ly~~gg~~ 220 (308)
+..+.+..| +.+.+||+..++- ..+.. ...--...+-..||+.|.-|+.+
T Consensus 24 GsqL~lAAg--------~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 24 GTQLILAAG--------SRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred CceEEEecC--------CEEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCCCc
Confidence 345666666 6899999987753 11111 11111122234588898888865
No 257
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=32.41 E-value=4e+02 Score=24.48 Aligned_cols=187 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred EeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeC-cC
Q 021759 70 LGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTA-AK 148 (308)
Q Consensus 70 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~-~~ 148 (308)
+|-+...+ .+.++++++|...+.--++.-+...-.-+++-..++..|++ +-....-+.+.|...-+=-++ ..
T Consensus 395 ~~dW~~~d-e~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiV------TfrqtDPlfviDlsNPenPkvlGe 467 (603)
T COG4880 395 LSDWTSED-EPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIV------TFRQTDPLFVIDLSNPENPKVLGE 467 (603)
T ss_pred ecccccCC-CccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEE------EEeccCceEEEEcCCCCCCceeEE
Q ss_pred CcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCC-------------ceeecccCccCccceeEEEECCE--E
Q 021759 149 LRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD-------------TWNLMSDGMKEGWTGISIVLEGK--L 213 (308)
Q Consensus 149 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-------------~W~~~~~~~~~~~~~~~~~~~~~--l 213 (308)
+..|-...-....++..++=-|....+. .+-.||.+.- .| .+..+.+++...|.+ |
T Consensus 468 LKIPGfS~YLHpigen~~lGvG~~~g~v---KiSLFdiSdl~~PkEv~~y~l~~~w------spvf~dhHAFl~d~~~~i 538 (603)
T COG4880 468 LKIPGFSEYLHPIGENRLLGVGAYQGGV---KISLFDISDLAAPKEVSNYTLSNAW------SPVFYDHHAFLYDPEAEI 538 (603)
T ss_pred EecCCchhhccccCCCcEEEeecccCCc---eEEEEeccCCCCchhhhheehhhhc------chhhhccceeecCCcccE
Q ss_pred EEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeCCEEEEEcCCceEeEEEeeeecCCCceeeeEEe
Q 021759 214 FVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVM 289 (308)
Q Consensus 214 y~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~~~ 289 (308)
+.+--+. .-++|-.+.+ -..+..-... ...-.+..+++.+|++||..-.. +|. +.|+.+
T Consensus 539 fFlPay~--~gyif~iedg-~kl~k~~e~k----~na~RA~fi~dylY~vg~~ev~~--------lde--nswe~V 597 (603)
T COG4880 539 FFLPAYL--GGYIFFIEDG-SKLRKRAERK----LNADRAFFIKDYLYLVGGNEVWK--------LDE--NSWEVV 597 (603)
T ss_pred EEecccC--ccEEEEEecC-ceeeehhhhc----ccceeeEEecceEEEeccceeEE--------ecc--chHhhh
No 258
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=32.26 E-value=3.5e+02 Score=23.74 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=46.3
Q ss_pred CCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEecCCCCCCccccCCeEEEEeC
Q 021759 178 SPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVE 257 (308)
Q Consensus 178 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 257 (308)
.+.-.+.|..+++--.-.-.++... -.++++||+..-. ...+..+|+++++.+.+.. +| .+..++...
T Consensus 184 ~~gG~vidv~s~evl~~GLsmPhSP----RWhdgrLwvldsg-tGev~~vD~~~G~~e~Va~--vp----G~~rGL~f~- 251 (335)
T TIGR03032 184 RDGGCVIDIPSGEVVASGLSMPHSP----RWYQGKLWLLNSG-RGELGYVDPQAGKFQPVAF--LP----GFTRGLAFA- 251 (335)
T ss_pred cCCeEEEEeCCCCEEEcCccCCcCC----cEeCCeEEEEECC-CCEEEEEcCCCCcEEEEEE--CC----CCCccccee-
Confidence 3455567777764221111122111 2468999999754 5689999999999999874 44 333455555
Q ss_pred CEEEEEcC
Q 021759 258 GKIYVVSS 265 (308)
Q Consensus 258 ~~l~v~gG 265 (308)
|.+.++|-
T Consensus 252 G~llvVgm 259 (335)
T TIGR03032 252 GDFAFVGL 259 (335)
T ss_pred CCEEEEEe
Confidence 66666654
No 259
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=30.85 E-value=4e+02 Score=24.03 Aligned_cols=87 Identities=10% Similarity=0.016 Sum_probs=43.2
Q ss_pred ceeEEEeCCCCCcccc-CCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 82 QSTIMYRATTNQWQLA-SPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
..+|..|........+ ..++.....|-.-..+|..+.+-+.. ......-+..||+.|..=+.+..+| ...|-...
T Consensus 216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~--~~~~~~~i~~~d~~t~~~~~~~~~p--~~~H~~ss 291 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT--PGGQDFWIAGYDPDTGERRRLMEMP--WCSHFMSS 291 (386)
T ss_dssp -SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE--TTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-
T ss_pred eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec--CCCCceEEEeeCCCCCCceEEEeCC--ceeeeEEc
Confidence 4789999765544333 33444445666555555444332222 2233456888999987544444443 56677778
Q ss_pred ECCEEEEEeccc
Q 021759 161 MGSKMYVTEGWT 172 (308)
Q Consensus 161 ~~~~iyv~GG~~ 172 (308)
.+++++|--|.+
T Consensus 292 ~Dg~L~vGDG~d 303 (386)
T PF14583_consen 292 PDGKLFVGDGGD 303 (386)
T ss_dssp TTSSEEEEEE--
T ss_pred CCCCEEEecCCC
Confidence 899999876654
No 260
>PRK02888 nitrous-oxide reductase; Validated
Probab=30.16 E-value=5.2e+02 Score=25.10 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=24.8
Q ss_pred cceEEEeCCC---CceEEecCCCCCCccccCCeEEE-EeCCE-EEEEcC
Q 021759 222 CPMKQYNPDD---DTWRYVGGDKFPCEVMHRPFAVN-GVEGK-IYVVSS 265 (308)
Q Consensus 222 ~~~~~yd~~~---~~W~~~~~~~~~~~~~~~~~~~~-~~~~~-l~v~gG 265 (308)
+.+.++|..+ ..+..+..++.+ ...+++. .-|++ +|+.|+
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVG----KsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVP----KNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECC----CCccceEECCCCCEEEEeCC
Confidence 4578888776 134555555677 7778884 45666 555554
No 261
>PRK10115 protease 2; Provisional
Probab=29.98 E-value=5.5e+02 Score=25.28 Aligned_cols=217 Identities=9% Similarity=-0.074 Sum_probs=0.0
Q ss_pred CCEEEEEeccCCCCCCCCceeEEEeCCCC--CccccCCCCCCCcceEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCC
Q 021759 64 QGKLFVLGGMRSDTETPMQSTIMYRATTN--QWQLASPMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPES 140 (308)
Q Consensus 64 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t 140 (308)
+++-+++.........+ .++|+++..++ +=..+-.-+........... +++-.++...+ .......++.-+..+
T Consensus 182 D~~~~~y~~~~~~~~~~-~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~--~~~~~~~l~~~~~~~ 258 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLP-YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS--ATTSEVLLLDAELAD 258 (686)
T ss_pred CCCEEEEEEecCCCCCC-CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC--CccccEEEEECcCCC
Q ss_pred CceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCC-CCceeecccCccCccceeEEEECCEEEEEeec
Q 021759 141 DTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDIN-KDTWNLMSDGMKEGWTGISIVLEGKLFVISEH 219 (308)
Q Consensus 141 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 219 (308)
..|..+-+.+........ ..++.+|+.--. +.....+...+.. ...|+.+-+......-......++.|++..-.
T Consensus 259 ~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~ 334 (686)
T PRK10115 259 AEPFVFLPRRKDHEYSLD-HYQHRFYLRSNR---HGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQ 334 (686)
T ss_pred CCceEEEECCCCCEEEEE-eCCCEEEEEEcC---CCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEe
Q ss_pred C-CcceEEEeCCCCceEEec-CCCCCCccccCCeEE-EEeCCEEEEEcCCceEeEEEeeeecCCCceeeeEEecCCC
Q 021759 220 G-DCPMKQYNPDDDTWRYVG-GDKFPCEVMHRPFAV-NGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTAPR 293 (308)
Q Consensus 220 ~-~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~-~~~~~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~~~~~p~ 293 (308)
. ...++.+|+.++....+. ..+.. ...... ...++..+++.-..-.....++. ||....+|+.+..+.
T Consensus 335 ~g~~~l~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~--~d~~~~~~~~l~~~~ 405 (686)
T PRK10115 335 RGLTSLRQINRKTREVIGIAFDDPAY----VTWIAYNPEPETSRLRYGYSSMTTPDTLFE--LDMDTGERRVLKQTE 405 (686)
T ss_pred CCEEEEEEEcCCCCceEEecCCCCce----EeeecccCCCCCceEEEEEecCCCCCEEEE--EECCCCcEEEEEecC
No 262
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=29.12 E-value=2.9e+02 Score=21.89 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=37.3
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCC
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINK 188 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 188 (308)
+.++.++-|.. ...+.+||.... .+..++........-.-+|+.++++|... ....+..||..+
T Consensus 71 g~~favi~g~~------~~~v~lyd~~~~---~i~~~~~~~~n~i~wsP~G~~l~~~g~~n---~~G~l~~wd~~~ 134 (194)
T PF08662_consen 71 GNEFAVIYGSM------PAKVTLYDVKGK---KIFSFGTQPRNTISWSPDGRFLVLAGFGN---LNGDLEFWDVRK 134 (194)
T ss_pred CCEEEEEEccC------CcccEEEcCccc---EeEeecCCCceEEEECCCCCEEEEEEccC---CCcEEEEEECCC
Confidence 56676665542 247889999633 33333332233323334788888888642 224689999874
No 263
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=28.39 E-value=13 Score=21.71 Aligned_cols=23 Identities=26% Similarity=0.145 Sum_probs=16.5
Q ss_pred CCCCchHHHHHhhhcCCcccccc
Q 021759 27 IPGLPDEIGELCLLHVPYPYQAL 49 (308)
Q Consensus 27 ~~~lp~~~~~~~l~~~p~~~~~~ 49 (308)
+..||+|++..|+.+++......
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~ 25 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLR 25 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHH
Confidence 45799999999999998665444
No 264
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=28.13 E-value=41 Score=18.39 Aligned_cols=20 Identities=40% Similarity=0.328 Sum_probs=15.1
Q ss_pred CchHHHHHhhhcCCcccccc
Q 021759 30 LPDEIGELCLLHVPYPYQAL 49 (308)
Q Consensus 30 lp~~~~~~~l~~~p~~~~~~ 49 (308)
||+|++..++..++......
T Consensus 1 lP~~ll~~I~~~l~~~d~~~ 20 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLR 20 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHH
Confidence 68999999998887544433
No 265
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=26.91 E-value=1.9e+02 Score=27.79 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=31.5
Q ss_pred CcceEEEeCCCCceEEecCCCCCCccccCCeEE-EEeCCEEEEEcCCceEeEEEeee
Q 021759 221 DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAV-NGVEGKIYVVSSGLNVAIGRVYE 276 (308)
Q Consensus 221 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~v~gG~~~~~~~~~~~ 276 (308)
...+.+|++.+..= .+..-+-|.. .+++.+ .+++|+++|+-|.++...+.+..
T Consensus 741 Dg~~rVy~Prs~e~-pv~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~ 794 (1012)
T KOG1445|consen 741 DGTLRVYEPRSREQ-PVYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQM 794 (1012)
T ss_pred CceEEEeCCCCCCC-ccccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhh
Confidence 34788888876652 2222122211 444444 67899999999977765554443
No 266
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=25.33 E-value=4e+02 Score=26.49 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=47.3
Q ss_pred CceeEEEeCCCCCccccCC--CCCCCcceEEEEeC---CEEEEEcCCCCCCCCCCCeEEEE------eCCCCceeeCcCC
Q 021759 81 MQSTIMYRATTNQWQLASP--MLTPRSFFASGNVN---GKIMAVGGTGANINETMTAVECY------DPESDTWTTAAKL 149 (308)
Q Consensus 81 ~~~~~~yd~~~~~W~~~~~--~~~~r~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~~y------d~~t~~W~~~~~~ 149 (308)
.-.+|.||+++.+|..... +|..-..-+.+..+ ..-.+.-|.+ ..-.+|++ .+....|+...--
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d-----g~~KiW~~~~~~n~~k~~s~W~c~~i~ 505 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD-----GDFKIWVFTDDSNIYKKSSNWTCKAIG 505 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccC-----CeEEEEEEecccccCcCccceEEeeee
Confidence 3458999999999965443 23222222222211 1022222221 12335555 4555568765322
Q ss_pred cCcccceeEEE--ECCEEEEEecccCCCCcCCeEEEEeCCCC
Q 021759 150 RMGLARYDSAV--MGSKMYVTEGWTWPFMFSPRGGVYDINKD 189 (308)
Q Consensus 150 ~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 189 (308)
........+.+ -||.+..+|-- +.+..||+.+.
T Consensus 506 sy~k~~i~a~~fs~dGslla~s~~-------~~Itiwd~~~~ 540 (792)
T KOG1963|consen 506 SYHKTPITALCFSQDGSLLAVSFD-------DTITIWDYDTK 540 (792)
T ss_pred ccccCcccchhhcCCCcEEEEecC-------CEEEEecCCCh
Confidence 22222222333 35677666542 57888888774
No 267
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.14 E-value=2.5e+02 Score=25.41 Aligned_cols=103 Identities=8% Similarity=-0.084 Sum_probs=53.5
Q ss_pred CeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCce---EEecCCCCCCccccCCeEEE-
Q 021759 179 PRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTW---RYVGGDKFPCEVMHRPFAVN- 254 (308)
Q Consensus 179 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W---~~~~~~~~~~~~~~~~~~~~- 254 (308)
+.+-++|+++..-...-. ......+.+.-.|+.=|+.+|.....|++||....+= ..++.+... .-+.++
T Consensus 216 nkiki~dlet~~~vssy~-a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~-----pv~~i~~ 289 (463)
T KOG1645|consen 216 NKIKIMDLETSCVVSSYI-AYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTIN-----PVHKIAP 289 (463)
T ss_pred ceEEEEecccceeeehee-ccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccC-----cceeecc
Confidence 566777777765544333 2222223334456677777887777899999865431 111111111 011222
Q ss_pred EeCCEEEEEcCCceEeEEEeeeecCCCceeeeE
Q 021759 255 GVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWK 287 (308)
Q Consensus 255 ~~~~~l~v~gG~~~~~~~~~~~~~~~~~~~~W~ 287 (308)
+-.++++-.||-..+..-....|.+....+.|.
T Consensus 290 ~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 290 VQPNKIFTSGGLLVFALTVLQFYEIVFSAECLP 322 (463)
T ss_pred cCccccccccceEEeeehhhhhhhhhccccCCC
Confidence 224577877875544444444455555555664
No 268
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=24.36 E-value=4.8e+02 Score=22.81 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=31.9
Q ss_pred CEEEEEcCCCCCCCCCCCeEEEEeCCCCce-eeCc---CCcC--cccceeEEEECCEEEEEec
Q 021759 114 GKIMAVGGTGANINETMTAVECYDPESDTW-TTAA---KLRM--GLARYDSAVMGSKMYVTEG 170 (308)
Q Consensus 114 ~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~---~~~~--~r~~~~~~~~~~~iyv~GG 170 (308)
+.+-++||.+ ...-..+++.++|-..+.- .++. +... -|..+-+++.+++|||+--
T Consensus 59 N~laLVGGg~-~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF 120 (346)
T KOG2111|consen 59 NYLALVGGGS-RPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTF 120 (346)
T ss_pred ceEEEecCCC-CCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEc
Confidence 3444556654 1555688999999554422 2222 1111 2355667778888888744
No 269
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=23.45 E-value=3.1e+02 Score=24.41 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=40.4
Q ss_pred CCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCce
Q 021759 162 GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTW 234 (308)
Q Consensus 162 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W 234 (308)
.+.-|+-|..+ .++-++|+.++.-...-.-... .....++.+..-|+|.......+.+||++.|+.
T Consensus 162 ~n~wf~tgs~D------rtikIwDlatg~LkltltGhi~-~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 162 GNEWFATGSAD------RTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred CceeEEecCCC------ceeEEEEcccCeEEEeecchhh-eeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 46777777765 6888999998875432110111 111124456666666554466899999998874
No 270
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=23.42 E-value=3.9e+02 Score=21.42 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=38.6
Q ss_pred CCcCCeEEEEeCCCCceeeccc-CccCccce-eEEEE-CCE-EEEEeec-C----CcceEEEeCCCCceEEecC
Q 021759 175 FMFSPRGGVYDINKDTWNLMSD-GMKEGWTG-ISIVL-EGK-LFVISEH-G----DCPMKQYNPDDDTWRYVGG 239 (308)
Q Consensus 175 ~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~-~~~~~-~~~-ly~~gg~-~----~~~~~~yd~~~~~W~~~~~ 239 (308)
.+....++++|..++.|..+.. +....... -..-+ +.. ++++|.. + +..+++|++.+++-+.+-.
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 3445789999998888765532 12111111 12223 444 4455522 1 5689999999999888764
No 271
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=23.33 E-value=3e+02 Score=29.81 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=28.9
Q ss_pred CCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEe
Q 021759 162 GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVIS 217 (308)
Q Consensus 162 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~g 217 (308)
.||||..|-.. .+-.|... +.|.+++- +++....++-+|+..+..|
T Consensus 497 sGKvYYaGn~t-------~~Gl~e~G-~nWmEL~l--~~~IVq~SVG~D~~~~~~~ 542 (3738)
T KOG1428|consen 497 SGKVYYAGNGT-------RFGLFETG-NNWMELCL--PEPIVQISVGIDTIMFRSG 542 (3738)
T ss_pred CccEEEecCcc-------EEeEEccC-CceEEecC--CCceEEEEeccchhheeec
Confidence 68999987642 45555543 78999874 4444444455666655554
No 272
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=23.30 E-value=5e+02 Score=22.61 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=76.1
Q ss_pred CCEEEEEeccCC---CCCCCCceeEEEeC-CCCCccccCCC-----CCCC---cceEEEEeCCEEEEEcCC-CCCCCCCC
Q 021759 64 QGKLFVLGGMRS---DTETPMQSTIMYRA-TTNQWQLASPM-----LTPR---SFFASGNVNGKIMAVGGT-GANINETM 130 (308)
Q Consensus 64 ~~~iyv~GG~~~---~~~~~~~~~~~yd~-~~~~W~~~~~~-----~~~r---~~~~~~~~~~~iyv~GG~-~~~~~~~~ 130 (308)
++.|+.+....- ........+..+.. ...+|+..... ...| ...+.++-+++||++-|. +.......
T Consensus 8 gGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~~~~~~ 87 (310)
T PF13859_consen 8 GGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRSAGADD 87 (310)
T ss_dssp TTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS--SSTT
T ss_pred CCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEeccccccc
Confidence 888888875431 11122233344543 34478654321 1122 356777779999998664 31112223
Q ss_pred CeEEEEeC--CCCceeeCcCCcCcccc---------eeEEEE-CCE-EEEEecccCCCCcCCeEEEEeCC-CCceeeccc
Q 021759 131 TAVECYDP--ESDTWTTAAKLRMGLAR---------YDSAVM-GSK-MYVTEGWTWPFMFSPRGGVYDIN-KDTWNLMSD 196 (308)
Q Consensus 131 ~~~~~yd~--~t~~W~~~~~~~~~r~~---------~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~-~~~W~~~~~ 196 (308)
..+..+.- ...+|.....++..-.. -..+++ |+. +|=+-+........-.+.+|... ..+|+.-..
T Consensus 88 ~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg 167 (310)
T PF13859_consen 88 WGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKG 167 (310)
T ss_dssp EEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S-
T ss_pred cceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccc
Confidence 33444432 22369776544432110 111223 333 33333333222212467778776 567987665
Q ss_pred CccCccceeE-EEE-CCEEEEEeecCC--cceEEEeCCCCceEEec
Q 021759 197 GMKEGWTGIS-IVL-EGKLFVISEHGD--CPMKQYNPDDDTWRYVG 238 (308)
Q Consensus 197 ~~~~~~~~~~-~~~-~~~ly~~gg~~~--~~~~~yd~~~~~W~~~~ 238 (308)
..+....... +.- +++|.++.-.+. +.++.=.-.-.+|++.-
T Consensus 168 ~s~~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~ 213 (310)
T PF13859_consen 168 MSPAGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGDMGTTWTEAL 213 (310)
T ss_dssp ---TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESSTTSS-EE-T
T ss_pred cCCCCcceEEEEeccCCeeEEEEecccceEEEEEEcccceehhhcc
Confidence 4444444444 455 789988865542 34555545567899843
No 273
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.22 E-value=5.6e+02 Score=23.14 Aligned_cols=85 Identities=7% Similarity=-0.042 Sum_probs=43.3
Q ss_pred CeEEEEeCCCC-ceeecccCccCccceeE--EEECC---EEEEEeecC-CcceEEEeCCCCceEEecCCCCCCccccC--
Q 021759 179 PRGGVYDINKD-TWNLMSDGMKEGWTGIS--IVLEG---KLFVISEHG-DCPMKQYNPDDDTWRYVGGDKFPCEVMHR-- 249 (308)
Q Consensus 179 ~~~~~yd~~~~-~W~~~~~~~~~~~~~~~--~~~~~---~ly~~gg~~-~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-- 249 (308)
+...+++..+. .|....+ ....+.... ...++ .++++.-.. ...+..+|....+|..+-..... ..+.
T Consensus 207 d~~~VW~~~~g~~~a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~--~~~~~s 283 (398)
T KOG0771|consen 207 DSARVWSVNTGAALARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK--IKRFKS 283 (398)
T ss_pred CceEEEEeccCchhhhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh--hhccCc
Confidence 46788888776 3554443 222222222 22334 677775443 34566677666555422211111 1122
Q ss_pred CeEE-EEeCCEEEEEcCC
Q 021759 250 PFAV-NGVEGKIYVVSSG 266 (308)
Q Consensus 250 ~~~~-~~~~~~l~v~gG~ 266 (308)
-.++ |..+|++..+|.-
T Consensus 284 iSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 284 ISSLAVSDDGKFLALGTM 301 (398)
T ss_pred ceeEEEcCCCcEEEEecc
Confidence 1233 5568999999985
No 274
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=23.18 E-value=6.3e+02 Score=23.71 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccc
Q 021759 76 DTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLAR 155 (308)
Q Consensus 76 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 155 (308)
+....++.++.+|+.++.=..-.++..-|..--. ..++.+.+++|+ .+...-.+...|+.+-.-..-+.-+..+..
T Consensus 369 d~~~~ls~LvllD~~tg~~l~~S~~~~Ir~r~~~-~~~~~~vaI~g~---~G~~~ikLvlid~~tLev~kes~~~i~~~S 444 (489)
T PF05262_consen 369 DPNHYLSELVLLDSDTGDTLKRSPVNGIRGRTFY-EREDDLVAIAGC---SGNAAIKLVLIDPETLEVKKESEDEISWQS 444 (489)
T ss_pred cCCCcceeEEEEeCCCCceecccccceeccceeE-EcCCCEEEEecc---CCchheEEEecCcccceeeeeccccccccC
Q ss_pred eeEEEECCEEEEE
Q 021759 156 YDSAVMGSKMYVT 168 (308)
Q Consensus 156 ~~~~~~~~~iyv~ 168 (308)
.+.+.++.||++
T Consensus 445 -~l~~~~~~iyaV 456 (489)
T PF05262_consen 445 -SLIVDGQMIYAV 456 (489)
T ss_pred -ceEEcCCeEEEE
No 275
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=22.90 E-value=6e+02 Score=23.38 Aligned_cols=61 Identities=16% Similarity=-0.000 Sum_probs=38.0
Q ss_pred CCCeEEEEeCCCCceeeCcCCcCc---ccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCce
Q 021759 129 TMTAVECYDPESDTWTTAAKLRMG---LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTW 191 (308)
Q Consensus 129 ~~~~~~~yd~~t~~W~~~~~~~~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 191 (308)
....+.+||..+++.+.+..+|.. ...-...+-++++|+-=-.. .....-|+.+||.+.+=
T Consensus 365 ~~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt~--~g~~~~IY~iDp~TatA 428 (435)
T PF14298_consen 365 DAKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTTE--DGSDPYIYKIDPATATA 428 (435)
T ss_pred ccceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEeec--CCCceeEEEEcCccccc
Confidence 356788999998877776666654 22223344578877753211 22124799999988753
No 276
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=21.64 E-value=8.2e+02 Score=24.47 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=34.2
Q ss_pred EECCEEEEE--eecC----------------CcceEEEeCCCCceEEecCCCCCCccccCCeE--EEE-eCCEEEEEcCC
Q 021759 208 VLEGKLFVI--SEHG----------------DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFA--VNG-VEGKIYVVSSG 266 (308)
Q Consensus 208 ~~~~~ly~~--gg~~----------------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~-~~~~l~v~gG~ 266 (308)
++++++|++ |-.. ...++++|-+..+|+++=+- ...+..+..|. -+. -+.++|+--..
T Consensus 370 ~~~gk~yaLVtGev~~~~~dpt~~~nv~~s~~~GVY~~~~dg~tw~RVfGN-teeER~~i~h~~tnmST~g~e~~iS~~n 448 (1030)
T PHA02579 370 VIDGKLYALVTGEVKTLNADPTRPENVVPSDDKGVYRLDEDGKTWTRVFGN-TEEERRRIEHGYTNMSTDGEEVFISSSN 448 (1030)
T ss_pred ccCCEEEEEEEEEEeecccCCCCccCcCCccccceEEEccCCCeEEEeeCC-CHHHhhhcccccccccCCCceeEEEecc
Confidence 568998854 4332 24689999999999998651 11111122222 233 34567776654
Q ss_pred ce
Q 021759 267 LN 268 (308)
Q Consensus 267 ~~ 268 (308)
.+
T Consensus 449 ~k 450 (1030)
T PHA02579 449 FK 450 (1030)
T ss_pred cc
Confidence 44
No 277
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.30 E-value=8.9e+02 Score=24.77 Aligned_cols=137 Identities=11% Similarity=0.095 Sum_probs=70.0
Q ss_pred EEEEEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEeCC--EEEEEcCCCCCCCCCCCeEEEEeCCCCce
Q 021759 66 KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNG--KIMAVGGTGANINETMTAVECYDPESDTW 143 (308)
Q Consensus 66 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 143 (308)
-|+|.||- ...-.+|+++. +..|.. ..+..+--.-+++.+.. .+.+-.|.+ ..+-+||....+=
T Consensus 219 pliVSG~D-----DRqVKlWrmne-tKaWEv-DtcrgH~nnVssvlfhp~q~lIlSnsED-------ksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 219 PLIVSGAD-----DRQVKLWRMNE-TKAWEV-DTCRGHYNNVSSVLFHPHQDLILSNSED-------KSIRVWDMTKRTS 284 (1202)
T ss_pred ceEEecCC-----cceeeEEEecc-ccceee-hhhhcccCCcceEEecCccceeEecCCC-------ccEEEEecccccc
Confidence 67888775 34556788875 557753 22222222334444433 555655554 5577778765432
Q ss_pred eeCcCCcCcccceeEEEECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcc
Q 021759 144 TTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCP 223 (308)
Q Consensus 144 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~ 223 (308)
...=.-...|.-.-++--...+|..|- + +.+.+|-++.. ....|+.+|.||.+-+ ..
T Consensus 285 v~tfrrendRFW~laahP~lNLfAAgH-D------sGm~VFkleRE-------------rpa~~v~~n~LfYvkd---~~ 341 (1202)
T KOG0292|consen 285 VQTFRRENDRFWILAAHPELNLFAAGH-D------SGMIVFKLERE-------------RPAYAVNGNGLFYVKD---RF 341 (1202)
T ss_pred eeeeeccCCeEEEEEecCCcceeeeec-C------CceEEEEEccc-------------CceEEEcCCEEEEEcc---ce
Confidence 111111122333333333566766544 2 35666644321 0123556666666653 37
Q ss_pred eEEEeCCCCceEEecC
Q 021759 224 MKQYNPDDDTWRYVGG 239 (308)
Q Consensus 224 ~~~yd~~~~~W~~~~~ 239 (308)
+..||..+.+=+.+..
T Consensus 342 i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 342 IRSYDLRTQKDTAVAS 357 (1202)
T ss_pred EEeeeccccccceeEe
Confidence 8888887765444443
No 278
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=21.05 E-value=3.8e+02 Score=26.14 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcc--cceeEEEECCEEEEEeccc
Q 021759 113 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGL--ARYDSAVMGSKMYVTEGWT 172 (308)
Q Consensus 113 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r--~~~~~~~~~~~iyv~GG~~ 172 (308)
+..+.+..|. .+++||+..++ .+.++.... .+..+-..+|+.|..||.+
T Consensus 24 GsqL~lAAg~---------rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 24 GTQLILAAGS---------RLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred CceEEEecCC---------EEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCc
Confidence 5667777664 38999997764 222232221 2222334588999888865
No 279
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=20.84 E-value=6.1e+02 Score=22.69 Aligned_cols=159 Identities=8% Similarity=0.025 Sum_probs=73.9
Q ss_pred eeEEEeCCCCCccccCCCCCCCc-ceEEEEe-CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEEE
Q 021759 83 STIMYRATTNQWQLASPMLTPRS-FFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 160 (308)
Q Consensus 83 ~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 160 (308)
.+-+||.+.|+..+--. .... -.++... --.+++.||.+ ..+-++|.+|..=. ..|.--+.--+.+.
T Consensus 216 ~VKCwDLe~nkvIR~Yh--GHlS~V~~L~lhPTldvl~t~grD-------st~RvWDiRtr~~V--~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYH--GHLSGVYCLDLHPTLDVLVTGGRD-------STIRVWDIRTRASV--HVLSGHTNPVASVM 284 (460)
T ss_pred eeEEEechhhhhHHHhc--cccceeEEEeccccceeEEecCCc-------ceEEEeeecccceE--EEecCCCCcceeEE
Confidence 46778888776432110 0000 0111112 24677888887 55777888776321 11221111111222
Q ss_pred ---ECCEEEEEecccCCCCcCCeEEEEeCCCCceeecccCccCccceeEEEECCEEEEEeecCCcceEEEeCCCCceEEe
Q 021759 161 ---MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYV 237 (308)
Q Consensus 161 ---~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~~~~~yd~~~~~W~~~ 237 (308)
.+..||. |..+ .++-.+|...++=. ...........+.+.+-+.+.|.....+.+..+++-.+..-
T Consensus 285 ~~~~dpqvit-~S~D------~tvrlWDl~agkt~--~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~-- 353 (460)
T KOG0285|consen 285 CQPTDPQVIT-GSHD------STVRLWDLRAGKTM--ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFL-- 353 (460)
T ss_pred eecCCCceEE-ecCC------ceEEEeeeccCcee--EeeecccceeeEEecCCchhhhhccCCccceeccCCccchh--
Confidence 2556654 4433 46666776554311 11112222233345555555554333557777776655431
Q ss_pred cCCCCCCccccCCeEEEEeCCEEEEEcCC
Q 021759 238 GGDKFPCEVMHRPFAVNGVEGKIYVVSSG 266 (308)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~v~gG~ 266 (308)
.. +. .......++....+-+|+.||.
T Consensus 354 ~n--ls-gh~~iintl~~nsD~v~~~G~d 379 (460)
T KOG0285|consen 354 QN--LS-GHNAIINTLSVNSDGVLVSGGD 379 (460)
T ss_pred hc--cc-cccceeeeeeeccCceEEEcCC
Confidence 11 11 0002233455667778888874
No 280
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=20.82 E-value=5.6e+02 Score=22.24 Aligned_cols=98 Identities=6% Similarity=-0.002 Sum_probs=52.6
Q ss_pred ceeEEEeCCCCCccccCCCCCCCcce--EEEEeCCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeCcCCcCcccceeEE
Q 021759 82 QSTIMYRATTNQWQLASPMLTPRSFF--ASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA 159 (308)
Q Consensus 82 ~~~~~yd~~~~~W~~~~~~~~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 159 (308)
+.+..||..+++-.+.-. .+.++. ..-+......+.+... .-.++...+..+|+..+.=+--..+...-.+
T Consensus 36 Dsl~LYd~~~g~~~~ti~--skkyG~~~~~Fth~~~~~i~sStk-----~d~tIryLsl~dNkylRYF~GH~~~V~sL~~ 108 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTIN--SKKYGVDLACFTHHSNTVIHSSTK-----EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSV 108 (311)
T ss_pred CeEEEEEcCCCceeeEee--cccccccEEEEecCCceEEEccCC-----CCCceEEEEeecCceEEEcCCCCceEEEEEe
Confidence 468899999886544332 333322 2222233333443331 2256777777778765431111122222222
Q ss_pred EECCEEEEEecccCCCCcCCeEEEEeCCCCcee
Q 021759 160 VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN 192 (308)
Q Consensus 160 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 192 (308)
.-.+..|+-++.+ +++..||+...+.+
T Consensus 109 sP~~d~FlS~S~D------~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 109 SPKDDTFLSSSLD------KTVRLWDLRVKKCQ 135 (311)
T ss_pred cCCCCeEEecccC------CeEEeeEecCCCCc
Confidence 3355788888876 58888998866554
No 281
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=20.53 E-value=90 Score=16.18 Aligned_cols=15 Identities=13% Similarity=0.198 Sum_probs=10.2
Q ss_pred EEEEeCCEEEEEcCC
Q 021759 252 AVNGVEGKIYVVSSG 266 (308)
Q Consensus 252 ~~~~~~~~l~v~gG~ 266 (308)
.++++|+++..+||-
T Consensus 8 K~~vvD~~~a~vGg~ 22 (28)
T PF00614_consen 8 KFVVVDDRVAFVGGA 22 (28)
T ss_dssp -EEEETTTEEEEE--
T ss_pred EEEEEcCCEEEECce
Confidence 467889998888884
No 282
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=20.49 E-value=3.8e+02 Score=20.15 Aligned_cols=65 Identities=11% Similarity=0.275 Sum_probs=36.8
Q ss_pred CCEEEEEeecCCcceEEEeCCCCc---eEEecCCCCCCccccCCeEEE---EeCCEEEEEcCCceEeEEEeeeecCCCce
Q 021759 210 EGKLFVISEHGDCPMKQYNPDDDT---WRYVGGDKFPCEVMHRPFAVN---GVEGKIYVVSSGLNVAIGRVYEEQNGGIS 283 (308)
Q Consensus 210 ~~~ly~~gg~~~~~~~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~~---~~~~~l~v~gG~~~~~~~~~~~~~~~~~~ 283 (308)
+..++++|- ...+.+||.+.|+ +++++ -. .....+. .....+.++||. ....-.+ ++.+.
T Consensus 63 ~~D~LliGt--~t~llaYDV~~N~d~Fyke~~---DG----vn~i~~g~~~~~~~~l~ivGGn---csi~Gfd--~~G~e 128 (136)
T PF14781_consen 63 GRDCLLIGT--QTSLLAYDVENNSDLFYKEVP---DG----VNAIVIGKLGDIPSPLVIVGGN---CSIQGFD--YEGNE 128 (136)
T ss_pred CcCEEEEec--cceEEEEEcccCchhhhhhCc---cc----eeEEEEEecCCCCCcEEEECce---EEEEEeC--CCCcE
Confidence 344777775 5599999999886 33332 22 1111111 235679999994 3333333 55555
Q ss_pred eeeEE
Q 021759 284 AEWKV 288 (308)
Q Consensus 284 ~~W~~ 288 (308)
.-|+.
T Consensus 129 ~fWtV 133 (136)
T PF14781_consen 129 IFWTV 133 (136)
T ss_pred EEEEe
Confidence 56764
No 283
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=20.22 E-value=3.8e+02 Score=22.87 Aligned_cols=95 Identities=15% Similarity=0.229 Sum_probs=0.0
Q ss_pred EEeccCCCCCCCCceeEEEeCCCCCccccCCCCCCCcceEEEEe--CCEEEEEcCCCCCCCCCCCeEEEEeCCCCceeeC
Q 021759 69 VLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESDTWTTA 146 (308)
Q Consensus 69 v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~ 146 (308)
+.||. ..--.+|.||-.++.-+.-......+.+-+-+.+ ++||+...|.+ ..+.+|+ |+.+
T Consensus 221 isgga-----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD-------~RiRVys-----wrtl 283 (323)
T KOG0322|consen 221 ISGGA-----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWD-------HRIRVYS-----WRTL 283 (323)
T ss_pred cCCCc-----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccC-------CcEEEEE-----eccC
Q ss_pred cCCcCcccceeEEEE-----CCEEEEEecccCCCCcCCeEEEEeC
Q 021759 147 AKLRMGLARYDSAVM-----GSKMYVTEGWTWPFMFSPRGGVYDI 186 (308)
Q Consensus 147 ~~~~~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~yd~ 186 (308)
.|+..-.+..+.+.. +-.|...++.+ ..|-.+++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD------~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKD------ARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCC------ceEEeeec
Done!