BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021760
(308 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/301 (72%), Positives = 242/301 (80%), Gaps = 19/301 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAE+SFVV+ML+K+KVS+ GAST SAAP +QAQ SS+PPTS QP+T Q AP VA
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQ--APVVA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +PE PAPA AP+ +SS SD+YGQAASNLVAG+NLE T+QQIL
Sbjct: 119 LPEVIPE-------PAPAVAPS---------ISSDSDIYGQAASNLVAGNNLEVTIQQIL 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q
Sbjct: 163 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA- 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q P +SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS QFQALR MVQANPQIL
Sbjct: 222 PQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSPQFQALRAMVQANPQIL 281
Query: 301 Q 301
Q
Sbjct: 282 Q 282
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/301 (71%), Positives = 236/301 (78%), Gaps = 20/301 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEI+VKPED V DVK NIE QG+DVYPASQQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTNFEIDVKPEDTVEDVKNNIEIAQGADVYPASQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+K KVS SG ST S+AP +QAQ S+ PP++TQP+TT+Q PA T
Sbjct: 61 ENKVAENSFIVIMLSKRKVSPSGGSTASSAPPSQAQPASTLPPSATQPSTTAQAPAVTAE 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQS ES P PVSS +D+YGQAASNLVAGSNLEATVQQIL
Sbjct: 121 LPQSAAES-----------------TPVVNPVSSETDIYGQAASNLVAGSNLEATVQQIL 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDRETV RALRAA+NNPERAVEYLYSGIPEQ V P+ RA + GQA P A
Sbjct: 164 DMGGGSWDRETVARALRAAFNNPERAVEYLYSGIPEQPEVQPLPRAPSSGQAAIPSA--T 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+PAAP + G NANPLDLFPQGLP +GS AGTLDFLRNSQQFQALR MVQANPQIL
Sbjct: 222 AQEPAAPT-SGGANANPLDLFPQGLPTIGSTTSAGTLDFLRNSQQFQALRAMVQANPQIL 280
Query: 301 Q 301
Q
Sbjct: 281 Q 281
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 219/331 (66%), Positives = 248/331 (74%), Gaps = 47/331 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA---- 116
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 117 ------------------------PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 227
Query: 213 GIPEQTAVPPVAR--ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 270
GIPEQ VPPVAR ASA GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G
Sbjct: 228 GIPEQAEVPPVARPPASA-GQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGG 283
Query: 271 NAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
N GAGTLDFLRNSQQFQALR MVQANPQ+LQ
Sbjct: 284 NPGAGTLDFLRNSQQFQALRAMVQANPQVLQ 314
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/301 (67%), Positives = 234/301 (77%), Gaps = 24/301 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAE+SFVV+ML+K+KVS+ GAST SAAP +QAQ SS+PPTS QP+T Q AP VA
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQ--APVVA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +PE PAPA AP+ +SS SD+YGQAASNLVAG+NLE T+QQIL
Sbjct: 119 LPEVIPE-------PAPAVAPS---------ISSDSDIYGQAASNLVAGNNLEVTIQQIL 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q
Sbjct: 163 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA- 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q P +SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS Q + + NP ++
Sbjct: 222 PQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSPQ-----ELGKQNPHLM 276
Query: 301 Q 301
+
Sbjct: 277 R 277
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 219/328 (66%), Positives = 244/328 (74%), Gaps = 43/328 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVK ED V+DVKKNIETVQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKLEDSVADVKKNIETVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA---- 116
ENKVAENSF+VVML KSK +S+GAS+ SA S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVVMLNKSKPASTGASSASAG----TSQAKSTPPSTSQPSISPQTPASVAA 116
Query: 117 ----------------------PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSS 154
TV P +PE P PA P+ PAP AP S
Sbjct: 117 PVAPAPTRAPPPAPTPAPVAATETVTTP--IPE-------PVPATIPSSTPAPDSAPAGS 167
Query: 155 VSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+RALRAA+NNPERAVEYLY+GI
Sbjct: 168 QGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYTGI 227
Query: 215 PEQTAVPPVARASAG-GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
PEQ VPPVARA A GQ NP AQT QQPAA AP SGPNANPLDLFPQGLPN+G N G
Sbjct: 228 PEQAEVPPVARAPASFGQPANPSAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGNPG 284
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQILQ 301
AGTLDFLRNSQQFQALR MVQANPQ+LQ
Sbjct: 285 AGTLDFLRNSQQFQALRAMVQANPQVLQ 312
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 218/331 (65%), Positives = 247/331 (74%), Gaps = 48/331 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA---- 116
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 117 ------------------------PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GQ-GDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 226
Query: 213 GIPEQTAVPPVAR--ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 270
GIPEQ VPPVAR ASA GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G
Sbjct: 227 GIPEQAEVPPVARPPASA-GQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGG 282
Query: 271 NAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
N GAGTLDFLRNSQQFQALR MVQANPQ+LQ
Sbjct: 283 NPGAGTLDFLRNSQQFQALRAMVQANPQVLQ 313
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 212/310 (68%), Positives = 231/310 (74%), Gaps = 30/310 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE+VQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST-QPTTTSQTPAPTV 119
ENKVAENSFVV+ML+K+KVSS+G S++SAA +N AQ P ST Q T TP T
Sbjct: 61 ENKVAENSFVVIMLSKNKVSSTGTSSISAALSNTAQ-----PDGSTDQARQTITTPQATA 115
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A PQS ESAP PA A + +DVY QAASNLVAGSNLE TVQQI
Sbjct: 116 ALPQSASESAPTPAPVPAAASSV-------------TDVYDQAASNLVAGSNLETTVQQI 162
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--------PPVARASAGGQ 231
LDMGGGSWDR+TV+RALRAAYNNPERAV+YLYSGIPEQT + P A A Q
Sbjct: 163 LDMGGGSWDRDTVVRALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQ 222
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
A NP AQ +Q P+SGPNANPLDLFPQGL N GSNAGAG LDFLRNS QFQALR
Sbjct: 223 AINPAAQDASQ---LAVPSSGPNANPLDLFPQGLTNAGSNAGAGNLDFLRNSPQFQALRA 279
Query: 292 MVQANPQILQ 301
MVQANPQILQ
Sbjct: 280 MVQANPQILQ 289
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/304 (68%), Positives = 233/304 (76%), Gaps = 22/304 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEIEVKPED V+DVKKNIE+VQG+DVYPA+QQML++QGKVLKD TTL+
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+SF VVML+KSKVSS G ST AAPA+QA SS P TQP+ TSQ P P A
Sbjct: 61 ENKVSESSFFVVMLSKSKVSSGGPSTAPAAPASQAPPASSLPSNVTQPSITSQAPVPAAA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQS ES+P A +++YGQAASNLVAGSNLEAT+Q+IL
Sbjct: 121 LPQSAAESSPAVVTSALLD----------------TNMYGQAASNLVAGSNLEATIQEIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG---GQAGNPPA 237
DMGGG W+RETV+RALRAA+NNPERA++YLYSGIPEQ VPPVA+ G G A NPPA
Sbjct: 165 DMGGGDWNRETVVRALRAAFNNPERAIDYLYSGIPEQAEVPPVAQVVQGPASGNAVNPPA 224
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
A QP AP SGPNANPLDLFPQG + GSNAG G LDFLRNSQQFQALR MVQANP
Sbjct: 225 L--APQPVV-APNSGPNANPLDLFPQGHHSTGSNAGTGNLDFLRNSQQFQALRAMVQANP 281
Query: 298 QILQ 301
QILQ
Sbjct: 282 QILQ 285
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/308 (68%), Positives = 238/308 (77%), Gaps = 31/308 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS-DVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MKVFVKTLKGT+FEIEVKPED V +VKKNIE VQG+DVYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVVVEVKKNIENVQGADVYPAAQQMLIYQGKVLKDDTTL 60
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ----TTSSAPPT--STQPTTTSQ 113
+E+KVAENSF+VVML+KSKVSS G ST +AAP N + T ++APPT S QPT+
Sbjct: 61 DESKVAENSFIVVMLSKSKVSSGGPSTATAAPPNVSSGGPSTATAAPPTLVSAQPTS--- 117
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE 173
S+P + P++ + A PA A + A D+YGQAASNLVAGSNLE
Sbjct: 118 ----------SLPSNVTQPSSTSQAAVPAAAFSDA--------DMYGQAASNLVAGSNLE 159
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
AT+QQILDMGGGSW+RETV+RALRAA+NNPERAVEYLYSGIPEQ VPPVA+ A G A
Sbjct: 160 ATIQQILDMGGGSWNRETVVRALRAAFNNPERAVEYLYSGIPEQAEVPPVAQGPASGVAV 219
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
NPPAQ Q A P+ GPNANPLDLFPQGLP+ GSNAGAG LDFLRNSQQFQALR MV
Sbjct: 220 NPPAQAQQ---PAAPPSGGPNANPLDLFPQGLPSTGSNAGAGNLDFLRNSQQFQALRAMV 276
Query: 294 QANPQILQ 301
QANPQILQ
Sbjct: 277 QANPQILQ 284
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 216/301 (71%), Positives = 240/301 (79%), Gaps = 17/301 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLIHQ KVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQVKVLKDPTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVS+SG S AP+N S QP T++ P TVA
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSN-----------SAQPATSTGQPTQTVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + AP +APAPAPAPAPAPAPAPA + ++DVYGQAASNLVAGS LE TVQQIL
Sbjct: 110 PQATAASVAPAQSAPAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQIL 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A S GQA NPP Q
Sbjct: 170 DMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPVS--GQAVNPP--VQ 225
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A PA P+ GPNANPLDLFPQGLPN+GSN GAG LDFL NS QFQALR MVQANPQIL
Sbjct: 226 ASPPA--VPSGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQALRAMVQANPQIL 283
Query: 301 Q 301
Q
Sbjct: 284 Q 284
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 199/303 (65%), Positives = 228/303 (75%), Gaps = 5/303 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+KSK +S ST S A + +A TS+ P ++ P + AP A
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPAST--PPVSVAPQAPAPA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 119 ATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 178
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 179 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQ 298
Q QPAA ++GPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQANPQ
Sbjct: 239 QTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQ 297
Query: 299 ILQ 301
ILQ
Sbjct: 298 ILQ 300
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 206/311 (66%), Positives = 232/311 (74%), Gaps = 25/311 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEI+VKPED V+DVK NIE VQGSDVYPASQQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQ-------AQTTSSAPPTSTQPTTTSQ 113
ENKVAENSFVVVML+K+K SS G++ +A + S++ P T +T +
Sbjct: 61 ENKVAENSFVVVMLSKNKNSSEGSTASTAPAPAPAPAPTPIVKAPSASAPPPTTTSTLTA 120
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDV--YGQAASNLVAGSN 171
AP VA P A + V+ VS+ YGQAASNLVAG+N
Sbjct: 121 PQAPVVA------------LPPPATVPAPAPAATPASTVTVVSETDAYGQAASNLVAGNN 168
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 231
E +QQILDMGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPVARA A GQ
Sbjct: 169 FEEAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARAPASGQ 228
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALR 290
A NPPAQ+ QQP PAP+SGPNANPLDLFPQG+PN+GSN AGAGTLDFLRNSQQFQALR
Sbjct: 229 AANPPAQS--QQP-VPAPSSGPNANPLDLFPQGIPNVGSNPAGAGTLDFLRNSQQFQALR 285
Query: 291 TMVQANPQILQ 301
MVQANPQILQ
Sbjct: 286 AMVQANPQILQ 296
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 217/305 (71%), Positives = 237/305 (77%), Gaps = 10/305 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAE+SF+V+ML+K+K SS ST S AP+ SA PTST +T Q PA T A
Sbjct: 61 ENKVAESSFIVIMLSKTKSSSGEGSTTSTAPS----AKPSATPTSTSVSTAPQAPASTGA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQAASNLVAGSNLEATVQQ 178
V PA APAPAPAP + SSV SD+YGQAASNLVAGSNLE T+QQ
Sbjct: 117 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSG-SSVPESDIYGQAASNLVAGSNLEGTIQQ 175
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
ILDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIPEQ PPV A Q NPPA
Sbjct: 176 ILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEAPPVTGVPASAQPSNPPAD 235
Query: 239 T-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQAN 296
T QA QPA+ P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQAN
Sbjct: 236 TPQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQAN 294
Query: 297 PQILQ 301
PQILQ
Sbjct: 295 PQILQ 299
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 216/301 (71%), Positives = 240/301 (79%), Gaps = 19/301 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLI GKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIPPGKVLKDPTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVS+SG S AP+N S QP T++ P TVA
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSN-----------SAQPATSTGQPTQTVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + ++ PA APAPAPAPAPAPAPA + ++DVYGQAASNLVAGS LE TVQQIL
Sbjct: 110 PQATA--ASVAPAQSAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A AS GQA NPP Q
Sbjct: 168 DMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPAS--GQAVNPP--VQ 223
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A QPA P+ GPNANPLDLFPQGLPN+GSN GAG LDFL NS QFQALR MVQANPQIL
Sbjct: 224 ASQPA--VPSGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQALRAMVQANPQIL 281
Query: 301 Q 301
Q
Sbjct: 282 Q 282
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 201/307 (65%), Positives = 229/307 (74%), Gaps = 7/307 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTS----SAPPTSTQPTTTSQTPA 116
ENKV EN+F+V+ML+KSK S ST S AP+ +A TS S PP S P ++ PA
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVPASTPPASVVPQASAPAPA 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P A ++P S P + + SD+YGQAASNLVAGSNLE T+
Sbjct: 121 PAPAATGALPASVTAPISSPSPAPAPTPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VA+ A Q NPP
Sbjct: 181 QQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQVPASAQPTNPP 240
Query: 237 AQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQ 294
A Q QP AP ++GPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQ
Sbjct: 241 ADAPQTAQP-APVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQ 299
Query: 295 ANPQILQ 301
ANPQILQ
Sbjct: 300 ANPQILQ 306
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 206/304 (67%), Positives = 232/304 (76%), Gaps = 26/304 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIETVQG+DVYP++QQMLIHQGKVL+D TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQGADVYPSAQQMLIHQGKVLRDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPT 118
ENKVAE SF+V+ML+KS +S + +A+ P QA AP STQP+T+ QTPAP
Sbjct: 61 ENKVAEKSFIVIMLSKSSKPASSSGASTASAAPTTQA---PPAPLASTQPSTSPQTPAPV 117
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A A V+ +D+YGQAASNLVAGSNLEAT+QQ
Sbjct: 118 -----------------AMPQAAPETAPAPAPAVTQ-TDIYGQAASNLVAGSNLEATIQQ 159
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA-SAGGQAGNPPA 237
ILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPVA+A ++GGQ N
Sbjct: 160 ILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAQAPASGGQPTN--P 217
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
QA Q A APTSGPNANPLDLFPQGLPN+GSN GAGTLDFLRNSQQFQALR MVQANP
Sbjct: 218 PAQAGQQPAAAPTSGPNANPLDLFPQGLPNVGSNTGAGTLDFLRNSQQFQALRAMVQANP 277
Query: 298 QILQ 301
QILQ
Sbjct: 278 QILQ 281
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 362 bits (930), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 211/302 (69%), Positives = 232/302 (76%), Gaps = 12/302 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+K+K SS ST S AP+ +A SA PTST + Q PA T A
Sbjct: 61 ENKVAENSFIVIMLSKTKSSSGEGSTTSTAPSVKA----SATPTSTSVSAAPQAPASTGA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P V A P +A APAP + + P SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 117 TPTPVTAPAAPASAAAPAPISSGSAVPE-------SDIYGQAASNLVAGSNLEGTIQQIL 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PPV R A Q NPPA
Sbjct: 170 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTREPASAQPANPPAAAP 229
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQI 299
A P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQANPQI
Sbjct: 230 QAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQI 289
Query: 300 LQ 301
LQ
Sbjct: 290 LQ 291
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 208/305 (68%), Positives = 226/305 (74%), Gaps = 28/305 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAE+SF+V+ML+K SA PTST +T Q PA T A
Sbjct: 61 ENKVAESSFIVIMLSKP----------------------SATPTSTSVSTAPQAPASTGA 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQAASNLVAGSNLEATVQQ 178
V PA APAPAPAP + SSV SD+YGQAASNLVAGSNLE T+QQ
Sbjct: 99 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSG-SSVPESDIYGQAASNLVAGSNLEGTIQQ 157
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
ILDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIPEQ PV A Q NPPA
Sbjct: 158 ILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEALPVTGVPASAQPSNPPAD 217
Query: 239 T-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQAN 296
T QA QPA+ P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQAN
Sbjct: 218 TPQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQAN 276
Query: 297 PQILQ 301
PQILQ
Sbjct: 277 PQILQ 281
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 202/314 (64%), Positives = 232/314 (73%), Gaps = 45/314 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA---- 116
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 117 ------------------------PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 227
Query: 213 GIPEQTAVPPVAR-ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
GIPEQ VPPVAR ++ GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 228 GIPEQAEVPPVARPPASAGQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGN 284
Query: 272 AGAGTLDFLRNSQQ 285
GAGTLDFLRNSQQ
Sbjct: 285 PGAGTLDFLRNSQQ 298
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 353 bits (905), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 193/302 (63%), Positives = 222/302 (73%), Gaps = 6/302 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+KSK +S ST S A + +A TS+ P ++ P + AP A
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPAST--PPVSVAPQAPAPA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 119 ATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 178
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 179 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q QPAA ++GPNANPLDLFPQ + AGAG+LDFLRNSQQFQALR MVQANPQI
Sbjct: 239 QTAQPAA-VTSAGPNANPLDLFPQ--VAISGAAGAGSLDFLRNSQQFQALRAMVQANPQI 295
Query: 300 LQ 301
LQ
Sbjct: 296 LQ 297
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 192/303 (63%), Positives = 215/303 (70%), Gaps = 26/303 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+K+ STV A S PP S P + +
Sbjct: 61 ENKVAENTFIVIMLSKT-------STVPA----------STPPVSVAPQAPAPAATGALP 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 104 A------SVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 158 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 217
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQ 298
Q QPAA ++GPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQANPQ
Sbjct: 218 QTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQ 276
Query: 299 ILQ 301
ILQ
Sbjct: 277 ILQ 279
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 209/320 (65%), Positives = 242/320 (75%), Gaps = 22/320 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQA-QTTSSAPPTSTQPTTTSQTPAPT 118
ENKVAENSF+V+MLTK+K S +ST AAP +A Q+T+ AP + P +T++ P PT
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAAT--PVSTTEVPLPT 118
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV---------------SDVYGQAA 163
APP SV S+PP +P P P PAPAPAP P P + +DVY QAA
Sbjct: 119 SAPPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAA 178
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
SNLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIPEQ PP
Sbjct: 179 SNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPP- 237
Query: 224 ARASAGGQAGN-PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLR 281
AR + QA N Q QPA+ ++GPNANPLDLFPQGLPN+GS A G+G+LDFLR
Sbjct: 238 ARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLR 297
Query: 282 NSQQFQALRTMVQANPQILQ 301
NS QFQALR MV+ANPQILQ
Sbjct: 298 NSPQFQALRAMVRANPQILQ 317
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 209/320 (65%), Positives = 242/320 (75%), Gaps = 22/320 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQA-QTTSSAPPTSTQPTTTSQTPAPT 118
ENKVAENSF+V+MLTK+K S +ST AAP +A Q+T+ AP + P +T++ P PT
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAAT--PVSTTEVPLPT 118
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV---------------SDVYGQAA 163
APP SV S+PP +P P P PAPAPAP P P + +DVY QAA
Sbjct: 119 SAPPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAA 178
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
SNLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIPEQ PP
Sbjct: 179 SNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPP- 237
Query: 224 ARASAGGQAGN-PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLR 281
AR + QA N Q QPA+ ++GPNANPLDLFPQGLPN+GS A G+G+LDFLR
Sbjct: 238 ARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLR 297
Query: 282 NSQQFQALRTMVQANPQILQ 301
NS QFQALR MV+ANPQILQ
Sbjct: 298 NSPQFQALRAMVRANPQILQ 317
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 195/302 (64%), Positives = 222/302 (73%), Gaps = 26/302 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 300 LQ 301
LQ
Sbjct: 276 LQ 277
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 195/302 (64%), Positives = 222/302 (73%), Gaps = 26/302 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 300 LQ 301
LQ
Sbjct: 276 LQ 277
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 195/302 (64%), Positives = 222/302 (73%), Gaps = 26/302 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 300 LQ 301
LQ
Sbjct: 276 LQ 277
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 194/302 (64%), Positives = 221/302 (73%), Gaps = 26/302 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNS QFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSHQFQALRAMVQANPQI 275
Query: 300 LQ 301
LQ
Sbjct: 276 LQ 277
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 201/304 (66%), Positives = 218/304 (71%), Gaps = 30/304 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+ F+IEVKP D V+DVKKNIET QG+ VYPA QQMLI+QGKVLKD TTL
Sbjct: 1 MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+K SS ST SAAP P T PT
Sbjct: 61 ENKVAENSFVVIMLSKAKSSSGEGSTTSAAP---------TPKVITLPT----------- 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
SVP S P APAPAPAP + + S VYGQAASNLVAG+NLE VQQIL
Sbjct: 101 ---SVP-SPAPAPAPAPAPAPRSGFCSSSSSGFFKSGVYGQAASNLVAGNNLEGAVQQIL 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ PPVA+ QA PA
Sbjct: 157 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVAQVPVSEQA---PAAQP 213
Query: 241 AQQPAAP--APTSGPNANPLDLFPQGLPNMGSNAG-AGTLDFLRNSQQFQALRTMVQANP 297
QQPA P P GPNANPLDLFPQGLPN+GS A AGTLDFLRNSQQFQALR MVQANP
Sbjct: 214 RQQPAQPTTVPAGGPNANPLDLFPQGLPNIGSGAAEAGTLDFLRNSQQFQALRAMVQANP 273
Query: 298 QILQ 301
QILQ
Sbjct: 274 QILQ 277
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 213/324 (65%), Positives = 237/324 (73%), Gaps = 39/324 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT F++EVKPED ++DVKK+IET QG+DVYPA QQMLI+QGKVLKD TT++
Sbjct: 1 MKIFVKTLKGTTFDVEVKPEDTIADVKKSIETTQGADVYPAGQQMLIYQGKVLKDNTTID 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP-TV 119
ENKVAENSFVV+MLTK+K S+ ST S A +T+ AP QT P T+
Sbjct: 61 ENKVAENSFVVIMLTKNKSSTGEGSTASTA------STTKAP----------QTIIPATI 104
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----------------SDVYGQA 162
APP VP SA P APAP PA APAPA APAP + DVYGQA
Sbjct: 105 APPAPVPTSALPAPAPAPTPAAAPAPAAAPAPAPTPAAAPAPAPAPSAIAAQQGDVYGQA 164
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 222
ASNLVAG+NLE +QQILDMGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPP
Sbjct: 165 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPP 224
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-----GSNAGAGTL 277
VA S GQA N PAQ Q A P+ GPNANPLDLFPQGLPNM G+ AGAGTL
Sbjct: 225 VAPVSLSGQAANQPAQPQQPAQPAAVPSGGPNANPLDLFPQGLPNMGSGGAGAGAGAGTL 284
Query: 278 DFLRNSQQFQALRTMVQANPQILQ 301
DFLRNSQQFQALR MVQANPQILQ
Sbjct: 285 DFLRNSQQFQALRAMVQANPQILQ 308
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 323 bits (828), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 191/302 (63%), Positives = 219/302 (72%), Gaps = 23/302 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF+I+V +D V+DVKK IE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN VAE+SFVV+ML+K+KVSSSGAST +AA ++ P S+ P T+S PT A
Sbjct: 61 ENNVAEDSFVVIMLSKNKVSSSGASTAAAA---PPNPVTAPQPASSVPPTSSTPEPPTSA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q S P P A VS VYGQAASNL+AGSN++ TVQQIL
Sbjct: 118 VGQGASNSEQSPVITPPTAA--------------VSSVYGQAASNLIAGSNVDPTVQQIL 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ VP VAR+ + GQA NP
Sbjct: 164 EMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSV--- 220
Query: 241 AQQPAAPA-PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+P PA PT GPN NPL+LFPQG+PNMG+ AG LDFLRN+QQFQALR MVQANPQI
Sbjct: 221 --RPPQPAVPTGGPNTNPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQI 278
Query: 300 LQ 301
LQ
Sbjct: 279 LQ 280
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 171/308 (55%), Positives = 211/308 (68%), Gaps = 23/308 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI+ +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIDAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+N++ EN F+VVMLTK+K SS+ ++ +++ + T +S P +A
Sbjct: 61 DNQITENGFLVVMLTKTKTSSAAGASSTSSASTIQHTQTSTP----------------LA 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPA-PAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + E+A P + PA APA + AP V + +D YG+AAS LVAGSNLE T+QQ+
Sbjct: 105 PASNPVEAASPVVSQPPAVAPATSVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVAR-----ASAGGQAG 233
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR + A GQ
Sbjct: 165 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNSGAAGQGT 224
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
N ++ A P+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+ QFQALRTMV
Sbjct: 225 NDVVAAESDLAQATVPSGGPNAAPLNLFPQGLPNLGATAGGGALDFLRNNPQFQALRTMV 284
Query: 294 QANPQILQ 301
QANPQILQ
Sbjct: 285 QANPQILQ 292
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 184/302 (60%), Positives = 213/302 (70%), Gaps = 16/302 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK++VKTLKG+ FEI+V P+D V+DVK++IET QG+ VYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKIYVKTLKGSQFEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLL 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN VAENSF+V+ML+KSK S ST S A A +A T SAPP+ PAP V
Sbjct: 61 ENNVAENSFIVIMLSKSKSPSGEGSTTSTAAAPKAPQT-SAPPS---------VPAPAV- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P ++ P A V S ++VY AAS LVAGSNLE +QQIL
Sbjct: 110 ---SQPPASTLPVPAPSPAPAPATAPIPSAAVGSEANVYDSAASLLVAGSNLEGAIQQIL 166
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+WDR+TVIR +RAA+NNPERAVEYLYSGIPEQ PPVA + GQA NP Q
Sbjct: 167 DMGGGTWDRDTVIRIVRAAFNNPERAVEYLYSGIPEQAEAPPVAPSPPSGQAANPLDQPP 226
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQI 299
A APA PNANPLDLFPQGLP+MGSN AGAG LDFLR +QQFQALR MVQ+NPQI
Sbjct: 227 AAAQPAPASAG-PNANPLDLFPQGLPDMGSNAAGAGNLDFLRTNQQFQALRAMVQSNPQI 285
Query: 300 LQ 301
LQ
Sbjct: 286 LQ 287
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 183/304 (60%), Positives = 216/304 (71%), Gaps = 21/304 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
ENKV ENSF+V+ML + K SSS A S AP+NQ APPT T P SQ P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQ------APPTQTVPAAPASQAP---V 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP +VP + +AP P +PAPA A VSS +D YGQA SNLVAGSNLEAT+Q I
Sbjct: 112 APATTVPVTV---SAPTPTATASPAPAVA---VSSEADNYGQATSNLVAGSNLEATIQSI 165
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +
Sbjct: 166 LEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQAS 222
Query: 240 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA QPAAP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQANP
Sbjct: 223 QATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANP 282
Query: 298 QILQ 301
QILQ
Sbjct: 283 QILQ 286
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 183/304 (60%), Positives = 216/304 (71%), Gaps = 21/304 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
ENKV ENSF+V+ML + K SSS A S AP+NQ APPT T P SQ P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQ------APPTQTVPAAPASQAP---V 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP +VP + +AP P +PAPA A VSS +D YGQA SNLVAGSNLEAT+Q I
Sbjct: 112 APATTVPVTV---SAPTPTATASPAPAVA---VSSEADNYGQATSNLVAGSNLEATIQSI 165
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +
Sbjct: 166 LEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQAS 222
Query: 240 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA QPAAP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQANP
Sbjct: 223 QATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANP 282
Query: 298 QILQ 301
QILQ
Sbjct: 283 QILQ 286
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 195/301 (64%), Positives = 223/301 (74%), Gaps = 25/301 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL GT+FEIEVKP D VSDVKK IETV+G++ YPA +QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGTNFEIEVKPADTVSDVKKAIETVKGAE-YPAVKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+KVSSSGAST S+ P++TQ A TVA
Sbjct: 60 ENNVVENSFIVIMLSKTKVSSSGAST-----------ASAPAPSATQ--------AQTVA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ SAP + P P A A APA A +DVYGQAASNLVAG+ LE+TVQQIL
Sbjct: 101 TPQV---SAPTVSVPEPTSGTATAAAPAAAAAVQ-TDVYGQAASNLVAGTTLESTVQQIL 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A + G+ Q Q
Sbjct: 157 DMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPSTGEQ-PANPQAQ 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
QQ A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQ+FQALR MVQANPQIL
Sbjct: 216 PQQAAPVAATGGPNANPLNLFPQGMPAADAAAGAGNLDFLRNSQKFQALRAMVQANPQIL 275
Query: 301 Q 301
Q
Sbjct: 276 Q 276
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/301 (55%), Positives = 205/301 (68%), Gaps = 27/301 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF ++V P+D V+ VKKNIET QG+DVYPA+QQMLIHQGKVL D TTLE
Sbjct: 1 MKINVKTLKGTHFVLQVNPQDTVAVVKKNIETAQGADVYPAAQQMLIHQGKVLNDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+FVV+ML+K+KV SSGAS+ AP+N TQP ++ + T
Sbjct: 61 ENKVVENNFVVIMLSKNKV-SSGASS---APSN----------LGTQPQSSLPPTSSTSQ 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP S + +P P P +V +Y AASNL+AGSNLE T+QQIL
Sbjct: 107 PPASAVGQGESNSEQSPVITP---------PTIAVPSIYDHAASNLMAGSNLETTIQQIL 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV AL AA+NNPERA+EYLYSGIPE+ VP R+ GQA N + Q
Sbjct: 158 EMGGGNWDRDTVTGALHAAFNNPERAIEYLYSGIPERADVPAAVRSLITGQAEN--SSIQ 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ QPA PT GPN NPL+LFPQGLPNM + G LD LRN ++FQALR ++ NPQIL
Sbjct: 216 STQPA--VPTGGPNTNPLNLFPQGLPNMSAIDNRGDLDSLRNREEFQALRETMRENPQIL 273
Query: 301 Q 301
Q
Sbjct: 274 Q 274
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 177/308 (57%), Positives = 208/308 (67%), Gaps = 23/308 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIE +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIEAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS-GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+N + EN F+VVMLTKSK SS+ GAS+ S A ++ QPT TS PAP
Sbjct: 61 DNTITENGFLVVMLTKSKTSSAVGASSTSTA-------------STVQPTQTSTPPAPAS 107
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P V ++P + A AP V + +D YG+AAS LVAGSNLE T+QQ+
Sbjct: 108 NP---VEVASPVVSQLPAVAPAASVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARA-----SAGGQAG 233
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR+ A Q
Sbjct: 165 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNPGATDQGT 224
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
N ++ A AP+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+ QFQALRTMV
Sbjct: 225 NNVIAGESDSAEATAPSGGPNAAPLNLFPQGLPNLGAAAGGGALDFLRNNPQFQALRTMV 284
Query: 294 QANPQILQ 301
QANPQILQ
Sbjct: 285 QANPQILQ 292
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 178/304 (58%), Positives = 212/304 (69%), Gaps = 18/304 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG VLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGTVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
E+KV EN+F+V+ML ++K SSS A S P+NQ APPT T P SQ P
Sbjct: 61 ESKVLENNFLVIMLRQNKGSSSAAPAKSKEPSNQ------APPTQTVPANPPSQAPVVPA 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P +AP P +PA A A VS+ ++ YGQAASNLVAG NLEAT+Q I
Sbjct: 115 PPAAAAPAPIVPISAPTPTATASPASAVA---VSTEAETYGQAASNLVAGGNLEATIQSI 171
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++ P
Sbjct: 172 LEMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQ------PADPV 225
Query: 240 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA Q PA +SGPNA+PLDLFPQ LPN +N AG G LD LRN+ QF++L ++VQANP
Sbjct: 226 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANP 285
Query: 298 QILQ 301
QILQ
Sbjct: 286 QILQ 289
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 177/301 (58%), Positives = 200/301 (66%), Gaps = 26/301 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPAKV--TANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SAP A A A A D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSAPAATATASAAPAVAVSTEA--------DSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 218
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQIL
Sbjct: 219 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 274
Query: 301 Q 301
Q
Sbjct: 275 Q 275
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 177/301 (58%), Positives = 200/301 (66%), Gaps = 26/301 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPA--KVTANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SAP A A A A D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSAPAATATASAAPAVAVSTEA--------DSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 218
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQIL
Sbjct: 219 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 274
Query: 301 Q 301
Q
Sbjct: 275 Q 275
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 177/312 (56%), Positives = 210/312 (67%), Gaps = 23/312 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQAL
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQAL 288
Query: 290 RTMVQANPQILQ 301
+VQANPQILQ
Sbjct: 289 LQLVQANPQILQ 300
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 177/312 (56%), Positives = 210/312 (67%), Gaps = 23/312 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQAL
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQAL 288
Query: 290 RTMVQANPQILQ 301
+VQANPQILQ
Sbjct: 289 LQLVQANPQILQ 300
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 190/315 (60%), Positives = 221/315 (70%), Gaps = 21/315 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIEGAQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-TTSSAPPTSTQPTT-TSQTPAPT 118
N VAENSF+V+ML+K+K S SG ST S AP QAQ T A T + P T ++TP T
Sbjct: 61 GNNVAENSFLVIMLSKAKASPSGPSTASKAPTIQAQPATPVAAATPSGPATPVARTPPST 120
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P S E APP A P PA + PA A S +DVY QAASNLV+G +LE TVQ
Sbjct: 121 A--PVSASELAPPSAQP-PAGSDIPA---AAVTASGDADVYSQAASNLVSGGSLEQTVQH 174
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG-QAGNPPA 237
ILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE PPVARA A QA NP A
Sbjct: 175 ILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAPVQQATNPQA 234
Query: 238 QTQAQ-----QPAAPAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQF 286
+QA QP+ A ++GPNANPL+LFPQG+P GSN AGAG LD LR QF
Sbjct: 235 LSQAAPVPPVQPSGVA-SAGPNANPLNLFPQGVPTGGSNPGAGVGAGAGALDALRALPQF 293
Query: 287 QALRTMVQANPQILQ 301
QAL +VQANPQILQ
Sbjct: 294 QALLALVQANPQILQ 308
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/302 (53%), Positives = 194/302 (64%), Gaps = 41/302 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A+ SS P S PTT S +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAA-------------SSVQPASNPPTTVSTS------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 102 ------NSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 300 LQ 301
LQ
Sbjct: 261 LQ 262
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/302 (53%), Positives = 194/302 (64%), Gaps = 41/302 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A+ SS P S PTT S +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAA-------------SSVQPASNPPTTVSTS------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 102 ------NSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 300 LQ 301
LQ
Sbjct: 261 LQ 262
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/302 (53%), Positives = 196/302 (64%), Gaps = 41/302 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTV- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S+ S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 99 ---SMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 300 LQ 301
LQ
Sbjct: 261 LQ 262
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 171/301 (56%), Positives = 201/301 (66%), Gaps = 15/301 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEIEV P KV D+KK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIEVDPTSKVVDLKKLIENTQGQNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K K S+S AS + P Q +AP QTP
Sbjct: 61 ENKVLENNFIVIMLSK-KGSTSAASGTAKEPTKQPMVDRAAPVAPAMQLPAEQTPV---- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SAP P PA A A S+ +D YGQAAS+LVAGSNLE TVQ IL
Sbjct: 116 ----TPVSAP---VPTALAVAPPAATAAAAAASTQADPYGQAASSLVAGSNLEGTVQSIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+ ALRAA+NNPERAVEYLY+G+PEQ A P A GQ G+P Q
Sbjct: 169 EMGGGAWDRDTVVHALRAAFNNPERAVEYLYTGVPEQEAPAPAQEPPALGQQGDPVQAPQ 228
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+QQ A +SGPNANPLDLFPQ LPN +NA G LD LRN+ QF+ L ++VQANPQIL
Sbjct: 229 SQQAVA---SSGPNANPLDLFPQVLPNASANAAGGNLDVLRNNSQFRGLLSLVQANPQIL 285
Query: 301 Q 301
Q
Sbjct: 286 Q 286
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 171/301 (56%), Positives = 196/301 (65%), Gaps = 30/301 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPA--KVTANQAPSTQTVPAT---------- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PPQ+ P A A A A + D YGQA SNLVAGSNLE T++ IL
Sbjct: 103 PPQTSAAPDAPAPIAPAATATASAAPAVAVSTEA--DSYGQATSNLVAGSNLEGTIKSIL 160
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 161 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 214
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQIL
Sbjct: 215 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 270
Query: 301 Q 301
Q
Sbjct: 271 Q 271
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 188/330 (56%), Positives = 217/330 (65%), Gaps = 51/330 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K+K SSSGAST S AP +Q+Q TP +VA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPA---------------TPVASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA---------------PAPAPVSSVSDVYGQAASN 165
PPP AP P PAP A A SS +DVY QAASN
Sbjct: 106 -------RTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASN 158
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVA 224
LV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE P PVA
Sbjct: 159 LVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVA 218
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPT-----SGPNANPLDLFPQGLPNMGSN-------- 271
RA A Q GNP +QAQ P SGPNANPL+LFPQG+P+ GSN
Sbjct: 219 RAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAG 278
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
AGAG LD LR QFQAL +VQANPQILQ
Sbjct: 279 AGAGALDALRQLPQFQALLALVQANPQILQ 308
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 188/330 (56%), Positives = 217/330 (65%), Gaps = 51/330 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K+K SSSGAST S AP +Q+Q TP +VA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPA---------------TPVASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA---------------PAPAPVSSVSDVYGQAASN 165
PPP AP P PAP A A SS +DVY QAASN
Sbjct: 106 -------RTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASN 158
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVA 224
LV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE P PVA
Sbjct: 159 LVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVA 218
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPT-----SGPNANPLDLFPQGLPNMGSN-------- 271
RA A Q GNP +QAQ P SGPNANPL+LFPQG+P+ GSN
Sbjct: 219 RAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAG 278
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
AGAG LD LR QFQAL +VQANPQILQ
Sbjct: 279 AGAGALDALRQLPQFQALLALVQANPQILQ 308
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 179/301 (59%), Positives = 200/301 (66%), Gaps = 22/301 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGKVL D TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGKVLSDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + APPT T P QT A A
Sbjct: 61 ENQVTENNFLVIMLRQNKGSSS------AAPA--KTTANQAPPTQTVPVVPPQTSAAPAA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SA A A A A D YGQAASNLVAGSNLE T+Q IL
Sbjct: 113 PAPIVPVSALAATATASAAPAVAVSTEA--------DSYGQAASNLVAGSNLEGTIQSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP Q
Sbjct: 165 EMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQ 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQIL
Sbjct: 222 AAQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQIL 278
Query: 301 Q 301
Q
Sbjct: 279 Q 279
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 173/318 (54%), Positives = 202/318 (63%), Gaps = 35/318 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S A Q+ T + P QP +S TPA V
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVS---------AGQSSTQPAQNPPVAQPVLSS-TPAAQVT 110
Query: 121 P---PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS---------DVYGQAASNLVA 168
P P + +P PA AP AP AP+ AP +S S D YGQAASNLVA
Sbjct: 111 PSPTPAAQVTPSPTPAPQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVA 170
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARAS 227
G+NLE TVQQ++DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R
Sbjct: 171 GNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFG 230
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNS 283
+G Q + PAP SG PN PL++FPQ + G G+L+FLRN+
Sbjct: 231 SG--------QATETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNN 282
Query: 284 QQFQALRTMVQANPQILQ 301
QFQALRTMV NPQILQ
Sbjct: 283 PQFQALRTMVHTNPQILQ 300
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 175/323 (54%), Positives = 200/323 (61%), Gaps = 43/323 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG HF+IEV+P D V +VKK IE VQG+ YP+ QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+VVML+K+K +++G S+ AP S P Q A
Sbjct: 61 ENKVTENTFLVVMLSKTKATTAGTSSTQQAP-------PSVSPAPAQNPVAPVPAAAAAQ 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P +A P A A DVYGQAASNLVAG+NLE +QQIL
Sbjct: 114 LSSLAPATATPTAGAGTTQTDA--------------DVYGQAASNLVAGNNLEHVIQQIL 159
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-PPVAR-----ASAGGQAGN 234
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE V PPVAR A
Sbjct: 160 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEVAPPVARPTPSVGQAANPTAP 219
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN----------------MGSNAGAGTLD 278
PA A A+ +GPNA PLDLFPQGLPN G+ AGAG LD
Sbjct: 220 APAAAAAAAAASATAQAGPNAAPLDLFPQGLPNLGAGAGAGAGAGLGAGAGAGAGAGALD 279
Query: 279 FLRNSQQFQALRTMVQANPQILQ 301
FLRN+ QFQALRTMVQANPQILQ
Sbjct: 280 FLRNNPQFQALRTMVQANPQILQ 302
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 167/304 (54%), Positives = 199/304 (65%), Gaps = 39/304 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA A +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAAQ----------TDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 264
Query: 298 QILQ 301
QILQ
Sbjct: 265 QILQ 268
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 173/311 (55%), Positives = 206/311 (66%), Gaps = 23/311 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K SS+ ++++ PT + AP
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSA-------------ASSTAKEPTKQPSVDRAIPTAPATQ 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + P AP P A APA A S+ +D YGQAASNLVAGSNLE TVQ IL
Sbjct: 108 PPAPPAPVSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS---AGGQAGNPPA 237
+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PEQ P +A A QA PA
Sbjct: 168 EMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPA 227
Query: 238 QTQAQQPA-AP------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q P+ AP P+SGPNANPLDLFPQ LPN +NAG G LD LRN+ QF+ L
Sbjct: 228 AVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLL 287
Query: 291 TMVQANPQILQ 301
++VQANPQILQ
Sbjct: 288 SLVQANPQILQ 298
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 173/311 (55%), Positives = 206/311 (66%), Gaps = 23/311 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K SS+ ++++ PT + AP
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSA-------------ASSTAKEPTKQPSVDRAIPTAPATQ 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + P AP P A APA A S+ +D YGQAASNLVAGSNLE TVQ IL
Sbjct: 108 PPAPPAPVSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS---AGGQAGNPPA 237
+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PEQ P +A A QA PA
Sbjct: 168 EMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPA 227
Query: 238 QTQAQQPA-AP------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q P+ AP P+SGPNANPLDLFPQ LPN +NAG G LD LRN+ QF+ L
Sbjct: 228 AVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLL 287
Query: 291 TMVQANPQILQ 301
++VQANPQILQ
Sbjct: 288 SLVQANPQILQ 298
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 174/312 (55%), Positives = 206/312 (66%), Gaps = 23/312 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTTTAAKAPATLAQPAAPVPPAASVARTPTQAPVAT 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A AP A A A + +DVY QAASNLV+G++LE T+QQIL
Sbjct: 121 ------------AETAPPSAQPQAAPAATVAATDDADVYSQAASNLVSGNSLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQAL
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVIPGAGSGALDALRQLPQFQAL 288
Query: 290 RTMVQANPQILQ 301
+VQANPQILQ
Sbjct: 289 LQLVQANPQILQ 300
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 277 bits (708), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 158/301 (52%), Positives = 188/301 (62%), Gaps = 54/301 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK T+ SA +S QP + PA TV+
Sbjct: 61 ENKVSEDGFLVVMLSKSK------------------TSGSAAASSVQPASN---PATTVS 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P S PP A D YG AASNLVAGSNLE T+QQI+
Sbjct: 100 MSNSTPPSDPPVQTHVSA------------------DTYGLAASNLVAGSNLEQTIQQIM 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 142 DMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV--- 198
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQIL
Sbjct: 199 -----------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQIL 246
Query: 301 Q 301
Q
Sbjct: 247 Q 247
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 161/310 (51%), Positives = 195/310 (62%), Gaps = 54/310 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV+E+ F+VVML+KSKV + +A + QT S+ P T P +TS V
Sbjct: 61 DNKVSEDGFLVVMLSKSKV-------LGSAGTSSTQTASNPPITVPTPDSTS------VV 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
QS +A P AP + +D YGQAASNLVAGSNLE T+QQ++
Sbjct: 108 QTQSANNNASPAVL---------------APTNVTTDTYGQAASNLVAGSNLEQTIQQLI 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE A
Sbjct: 153 DMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAE----------------VAVPA 196
Query: 241 AQQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
AQ P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+ QFQALRT
Sbjct: 197 AQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNPQFQALRT 255
Query: 292 MVQANPQILQ 301
MVQ+NPQILQ
Sbjct: 256 MVQSNPQILQ 265
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 170/318 (53%), Positives = 202/318 (63%), Gaps = 43/318 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPA-------------PAPAPAPAPAPAPVSSV-SDVYGQAASNL 166
P S +S+P PA+P PA A P VS +D YGQAAS L
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTL 166
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PV 223
V+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P
Sbjct: 167 VSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPE 226
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
A+ + G A P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 227 AQIAGSGAA-----------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 274
Query: 284 QQFQALRTMVQANPQILQ 301
QFQ LRTMV +NPQILQ
Sbjct: 275 DQFQQLRTMVHSNPQILQ 292
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/304 (54%), Positives = 198/304 (65%), Gaps = 39/304 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA A +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAAQ----------TDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q + LRTMV +NP
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQLEQLRTMVHSNP 264
Query: 298 QILQ 301
QILQ
Sbjct: 265 QILQ 268
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 166/303 (54%), Positives = 180/303 (59%), Gaps = 73/303 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDS-------------------------------------- 22
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
VV + K+ S GA PA + + T T TP P
Sbjct: 23 ----------VVDVKKNIESVQGADVY---PAAKQMLIHQGKVLKDETTETVTTPIPE-- 67
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA + PAP APV S DVYGQAASNL AGSNLE+T+QQIL
Sbjct: 68 --------------PVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQIL 113
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR--ASAGGQAGNPPAQ 238
DMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ VPPVAR ASA GQ NPPAQ
Sbjct: 114 DMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASA-GQPANPPAQ 172
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
T QQPAA AP SGPNANPLDLFPQGLPN+G N GAGTLDFLRNSQQFQALR MVQANPQ
Sbjct: 173 T--QQPAA-APASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQFQALRAMVQANPQ 229
Query: 299 ILQ 301
+LQ
Sbjct: 230 VLQ 232
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 161/304 (52%), Positives = 194/304 (63%), Gaps = 45/304 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 258
Query: 298 QILQ 301
QILQ
Sbjct: 259 QILQ 262
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 161/304 (52%), Positives = 194/304 (63%), Gaps = 45/304 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTNPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 258
Query: 298 QILQ 301
QILQ
Sbjct: 259 QILQ 262
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/304 (52%), Positives = 193/304 (63%), Gaps = 45/304 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q + LRTMV +NP
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQLEQLRTMVHSNP 258
Query: 298 QILQ 301
QILQ
Sbjct: 259 QILQ 262
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 162/303 (53%), Positives = 193/303 (63%), Gaps = 43/303 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG + YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKNNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVS-SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKV E F+VVML+KSK + S+G S+V A A TTSS P + P+TT P
Sbjct: 61 ENKVTEEGFLVVMLSKSKTAGSAGQSSVQPASA----TTSSTKPET--PSTTQSIAVP-- 112
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
++P A PA + +D YGQAAS LV+GS+LE VQQI
Sbjct: 113 --------ASPITAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQI 149
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ-AGNPPAQ 238
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE VA A G Q AG+ A
Sbjct: 150 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPE---TAEVAVAVPGAQMAGSGAA- 205
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NPQ
Sbjct: 206 -----PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQ 259
Query: 299 ILQ 301
ILQ
Sbjct: 260 ILQ 262
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/304 (50%), Positives = 191/304 (62%), Gaps = 33/304 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK +++G S+ T +S + + +
Sbjct: 61 DNKVTEDGFLVVMLSKSKTAAAGTSSTQPVSTPPTTTPTSNSTPDAPAPDAQAPASKSAS 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ +A SD YGQAASNLVAGS+LE T+QQI+
Sbjct: 121 ASDTATANAQ-------------------------SDTYGQAASNLVAGSSLEQTIQQIM 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVAR A + +T
Sbjct: 156 DVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPA-----DQGIET 210
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG--AGTLDFLRNSQQFQALRTMVQANP 297
A A GPN++PL++FP+ L G +AG G+LDFLRN+QQFQALR+MVQANP
Sbjct: 211 GAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGLVLGSLDFLRNNQQFQALRSMVQANP 270
Query: 298 QILQ 301
QILQ
Sbjct: 271 QILQ 274
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 180/312 (57%), Positives = 215/312 (68%), Gaps = 26/312 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP TS T PT A
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRT-------PTQA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E+APP A APA A S +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 114 PV-ATAETAPPSAQTQAAPAATAAA-------SDDADVYSQAASNLVSGNNLEQTIQQIL 165
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE PPVARA A GQ N A +
Sbjct: 166 DMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAAGQQTNQQAPSP 225
Query: 241 AQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ A + A ++ PNANPL+LFPQG+P+ G+N AG+G LD LR QFQAL
Sbjct: 226 AQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQAL 285
Query: 290 RTMVQANPQILQ 301
+VQANPQILQ
Sbjct: 286 LQLVQANPQILQ 297
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 193/305 (63%), Gaps = 43/305 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+NKV+E+ F+VVML+K K + S+G S+ A S PPT TV
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQFA---------SNPPT-------------TV 98
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P S P P A A A + ++ YGQAASNLVAGSNLE T+QQ+
Sbjct: 99 STPNSTP-------LVQPQSANNNASATDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQL 151
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
+DMGGGSWDR+TV ALRAAYNNPERAV+YLYSGIP + AVP A P +
Sbjct: 152 MDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPA---------ASYPIS 202
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
QT A+ G PN++PL++FPQ + G+ A G+LDFLRN+ QFQALR+MVQ+N
Sbjct: 203 QTTETGGASVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNPQFQALRSMVQSN 261
Query: 297 PQILQ 301
PQILQ
Sbjct: 262 PQILQ 266
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 186/306 (60%), Gaps = 54/306 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK T+ SA +STQP
Sbjct: 61 ENKVSEEGFLVVMLSKSK------------------TSVSAGQSSTQPAQN--------- 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP A P + PA P S +D YGQAASNLVAG+NLE TVQQ++
Sbjct: 94 ---------PPVAQPVLSSTPAAQVTP-----SVQTDTYGQAASNLVAGNNLEQTVQQLM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R +G Q
Sbjct: 140 DMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSG--------QA 191
Query: 240 QAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ PAP SG PN PL++FPQ + G G+L+FLRN+ QFQALRTMV
Sbjct: 192 TETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHT 251
Query: 296 NPQILQ 301
NPQILQ
Sbjct: 252 NPQILQ 257
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/305 (50%), Positives = 189/305 (61%), Gaps = 57/305 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+NKV+E+ F+VVML+K K + S+G S+ A N PPT TV
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQACCFN--------PPT-------------TV 99
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P S P P ++ YGQAASNLVAGSNLE T+QQ+
Sbjct: 100 STPNSTPLVQP----------------------HVTTNTYGQAASNLVAGSNLEQTIQQL 137
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
+DMGGGSWDR+TV ALRAAYNNPERAV+YLYSGIP + AVP A P +
Sbjct: 138 MDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPA---------ASYPIS 188
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
QT A+ G PN++PL++FPQ + G+ A G+LDFLRN+ QFQALR+MVQ+N
Sbjct: 189 QTTETGGASVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNPQFQALRSMVQSN 247
Query: 297 PQILQ 301
PQILQ
Sbjct: 248 PQILQ 252
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 179/312 (57%), Positives = 214/312 (68%), Gaps = 26/312 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP TS T PT A
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRT-------PTQA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E+APP A APA A S +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 114 PV-ATAETAPPSAQTQAAPAATAAA-------SDDADVYSQAASNLVSGNNLEQTIQQIL 165
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE PPVA A A GQ N A +
Sbjct: 166 DMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENVEAPPVAGAPAAGQQTNQQAPSP 225
Query: 241 AQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ A + A ++ PNANPL+LFPQG+P+ G+N AG+G LD LR QFQAL
Sbjct: 226 AQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQAL 285
Query: 290 RTMVQANPQILQ 301
+VQANPQILQ
Sbjct: 286 LQLVQANPQILQ 297
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 163/292 (55%), Positives = 195/292 (66%), Gaps = 23/292 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLR 281
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALR 280
>gi|168057528|ref|XP_001780766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667784|gb|EDQ54405.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 396
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 168/306 (54%), Positives = 193/306 (63%), Gaps = 18/306 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++ V ++ VS VK+ IE +QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLHVAEDELVSSVKRKIEELQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKVAEN F+VVMLTK ++ S T +S T
Sbjct: 61 DNKVAENGFLVVMLTKVRLHES-------------NTGTSRWRTRVVAPAAPAPAPAPAP 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P A P APA A A APA A D YGQAASNLVAGS LE+TVQQI+
Sbjct: 108 ASTSTPAPAAPAPAPAAVAATPGAGAPAVALCRGTGDGYGQAASNLVAGSALESTVQQIM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE VP PVAR G A A
Sbjct: 168 DMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEAAEVPAPVARGPPAGGAPVAAAPA 227
Query: 240 QAQQPAAPAPTS---GPNANPLDLFPQGLP-NMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
A A + GPNA PLDLFPQG+P G AG G LDFLRN+ QFQALRTMVQA
Sbjct: 228 GPGAAGAAAVAANPQGPNAAPLDLFPQGMPGAGGGGAGLGALDFLRNNPQFQALRTMVQA 287
Query: 296 NPQILQ 301
NPQILQ
Sbjct: 288 NPQILQ 293
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/301 (49%), Positives = 186/301 (61%), Gaps = 36/301 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK +S SA P+ ++ T+T +++ AP+
Sbjct: 61 ENKVTEEGFLVVMLSKSKTAS------SAGPS-----STQPTSTTTSTISSTTLAAPSTT 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 110 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 155 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS---------- 204
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQIL
Sbjct: 205 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 264
Query: 301 Q 301
Q
Sbjct: 265 Q 265
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 154/301 (51%), Positives = 184/301 (61%), Gaps = 40/301 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK T SSA P+S QPT+T+ +
Sbjct: 61 ENKVTEEGFLVVMLSKSK------------------TPSSAGPSSIQPTSTTTSTISPTP 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+AP A PA P PA SD YGQAAS LV+GS++E VQQI+
Sbjct: 103 L------AAPSIAVPASNSTPVQEQLPAQ------SDTYGQAASTLVSGSSVEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE A+P + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVAIPATNLSGVGSGA-------- 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ AP + GPN++PLDLFPQ + GTL+FLR + QFQ LR+MV +NPQIL
Sbjct: 203 --ELTAPPASGGPNSSPLDLFPQEAVSDAGGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 260
Query: 301 Q 301
Q
Sbjct: 261 Q 261
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 166/303 (54%), Positives = 195/303 (64%), Gaps = 41/303 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+EN F+VVMLTKSK +AAP T+S A P+ST
Sbjct: 61 ENKVSENGFLVVMLTKSK---------TAAP-----TSSGATPSST-------------- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P AAPA PAPAP ++ SDVYGQAASNLVAG+ LE T+QQ++
Sbjct: 93 ----------PQAAPATVTTTPSPAPPAPAPTAT-SDVYGQAASNLVAGTGLEQTIQQLV 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR++ RALRAAYNNPERAVEYLYSGIP+ PPVARA A +
Sbjct: 142 DMGGGSWDRDSCARALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPSA 201
Query: 241 AQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
A PAP T GPNA PLDLFPQ G G LDFLRN+ QFQALRTMVQ NPQ
Sbjct: 202 APTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNPQ 261
Query: 299 ILQ 301
+LQ
Sbjct: 262 LLQ 264
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 160/311 (51%), Positives = 195/311 (62%), Gaps = 48/311 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HF+IEV+P D V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENK+ E+ F+VVML+KSK AP + +++ T T +
Sbjct: 61 ENKITEDGFLVVMLSKSK-----------APGSTGSSSTQTTTIVPTTTPTPNS------ 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S+PE+ PA PA + A + P ++ D YGQAASNLV+G+NLE T+Q+I+
Sbjct: 104 --TSIPEA---PAQPAASRNVAISDVPT---ANAQIDTYGQAASNLVSGNNLEQTIQEIM 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-PPVAR------ASAGGQAG 233
DMGGGSWDRETV RALRAAYNNPERAV+YLYSGIPE V PVAR AGG
Sbjct: 156 DMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEVAAPVARPPTGQPIDAGG--- 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALR 290
AP + GPN++PL++FPQ G G+L+FLRN+ QFQALR
Sbjct: 213 ----------ATAPPVSGGPNSSPLNMFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALR 262
Query: 291 TMVQANPQILQ 301
+MVQANPQILQ
Sbjct: 263 SMVQANPQILQ 273
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 165/306 (53%), Positives = 195/306 (63%), Gaps = 43/306 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S + S TS+ P T +TPA
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSL--------------TSSTPLTRQETPADASR 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AAP P AP P P P + S+ YGQAASNL++GSNL+ T+ Q++
Sbjct: 107 ------------AAPQPLVAPTRTPQPERPPAEAPSNAYGQAASNLLSGSNLDTTINQLM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGN--PP 236
+MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP AGGQ N P
Sbjct: 155 EMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVP------AGGQGANTTEP 208
Query: 237 AQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ T+ A SG PNA+PL+LFPQG N G AG GTL+FLR++QQFQALR MV
Sbjct: 209 SSTRE------ASLSGIPNASPLNLFPQGDANDGGGAGGGTLEFLRHNQQFQALREMVHT 262
Query: 296 NPQILQ 301
NPQILQ
Sbjct: 263 NPQILQ 268
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 165/306 (53%), Positives = 195/306 (63%), Gaps = 43/306 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S + S TS+ P T +TPA
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSL--------------TSSTPLTRQETPADASR 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AAP P AP P P P + S+ YGQAASNL++GSNL+ T+ Q++
Sbjct: 107 ------------AAPQPLVAPTRTPQPERPPAEAPSNAYGQAASNLLSGSNLDTTINQLM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGN--PP 236
+MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP AGGQ N P
Sbjct: 155 EMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVP------AGGQGANTTEP 208
Query: 237 AQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ T+ A SG PNA+PL+LFPQG N G AG GTL+FLR++QQFQALR MV
Sbjct: 209 SSTRE------ASLSGIPNASPLNLFPQGDANDGDGAGGGTLEFLRHNQQFQALREMVHT 262
Query: 296 NPQILQ 301
NPQILQ
Sbjct: 263 NPQILQ 268
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/304 (51%), Positives = 186/304 (61%), Gaps = 50/304 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V P D + VKKNIE QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK ++G T+S P T
Sbjct: 61 DNKVTEDGFLVVMLSKSKTGTAG--------------------------TSSTQPVSTPP 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P P A A A SD YGQAASNLVAGSNLE T+QQI+
Sbjct: 95 TTTPTSISTPAPDAQAFAQ----------------SDTYGQAASNLVAGSNLEQTLQQIM 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVAR A + +T
Sbjct: 139 DMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPA-----DQATET 193
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLP--NMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
A A PN++PL++FP+ + G+ G G+LDFLRN+QQFQALR+MVQANP
Sbjct: 194 GAAPAAPAPAFGAPNSSPLNMFPETISGGGGGAGGGLGSLDFLRNNQQFQALRSMVQANP 253
Query: 298 QILQ 301
QILQ
Sbjct: 254 QILQ 257
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 158/304 (51%), Positives = 197/304 (64%), Gaps = 25/304 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQ-TPAPTV 119
ENKV+EN F+VVMLTKS+ SSG + S++ ++ + + S++ + + S+ +
Sbjct: 61 ENKVSENGFLVVMLTKSR--SSGIARCSSSSSSSSSSPSTSSSSGSGCYAVSKFSLLHLF 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S+ PPAA SDVYGQAASNLVAG+ LE T+QQ+
Sbjct: 119 WCSLSLVFLRRPPAA--------------------TSDVYGQAASNLVAGTGLEQTIQQL 158
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGGSWDR++ +RALRAAYNNPERAVEYLYSGIP+ PPVARA A T
Sbjct: 159 VDMGGGSWDRDSCVRALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPT 218
Query: 240 QAQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
A PAP T GPNA PLDLFPQ G G LDFLRN+ QFQALRTMVQ NP
Sbjct: 219 AAPTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNP 278
Query: 298 QILQ 301
Q+LQ
Sbjct: 279 QLLQ 282
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 153/305 (50%), Positives = 188/305 (61%), Gaps = 31/305 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI +P D V +KKNIE +QG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-- 118
E+K++E+ F+VVML KSK SS + PA Q+ + + P + AP
Sbjct: 61 ESKISEDGFLVVMLGKSKTMSS-----TGTPAAQSSSAPAPTPAPAVAPAPAPAAAPASA 115
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
V P +VPE+ P +PA AP SD YG+AASN+VAGSNLE T+Q
Sbjct: 116 VIPNTTVPEA---PLSPAFAP----------------SDTYGEAASNVVAGSNLEQTIQH 156
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPP 236
I+DMGGG WD V RALRAAYNNPERAV+YLYSGIPE + AVP AGN
Sbjct: 157 IMDMGGGMWDTNMVSRALRAAYNNPERAVDYLYSGIPEMAEAAVPVSHFQGDQINAGNNA 216
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
AAP PN+ PL++FPQ + + AG G+L+FLRN+ QFQ LR+MVQ N
Sbjct: 217 ISDNGVAGAAPG---APNSLPLNMFPQETLSGVTGAGLGSLEFLRNNPQFQTLRSMVQRN 273
Query: 297 PQILQ 301
PQILQ
Sbjct: 274 PQILQ 278
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 256 bits (655), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 159/307 (51%), Positives = 194/307 (63%), Gaps = 15/307 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
ENKV E+ F+VVML+KSK +S A + S T + AP + P +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
+A P P AP A AP A S ++D YGQAASN+V+ ++LE T+
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNP 235
QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHF--------- 231
Query: 236 PAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
PA + A AP SG PN++PL++FPQ + + G G+L+FLRN+ QFQALR MVQ
Sbjct: 232 PADQETGGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALRAMVQ 291
Query: 295 ANPQILQ 301
ANPQILQ
Sbjct: 292 ANPQILQ 298
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/301 (48%), Positives = 185/301 (61%), Gaps = 38/301 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLP--TIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK +SS A P+ ++ T+T +++ AP+
Sbjct: 59 ENKVTEEGFLVVMLSKSKTASS------AGPS-----STQPTSTTTSTISSTTLAAPSTT 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 108 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 153 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS---------- 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQIL
Sbjct: 203 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 262
Query: 301 Q 301
Q
Sbjct: 263 Q 263
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/302 (50%), Positives = 187/302 (61%), Gaps = 46/302 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK T+ SA +S QP + PA TV
Sbjct: 61 ENKVSEDGFLVVMLSKSK------------------TSGSAAASSVQPASN---PATTV- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S+ S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 99 ---SMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN+ Q + + NP +
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQ-----ELGKQNPGL 255
Query: 300 LQ 301
L+
Sbjct: 256 LR 257
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 158/304 (51%), Positives = 193/304 (63%), Gaps = 44/304 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA A +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAAQ----------TDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q + + NP
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQ-----ELGKQNP 259
Query: 298 QILQ 301
Q+L+
Sbjct: 260 QLLR 263
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 155/306 (50%), Positives = 192/306 (62%), Gaps = 12/306 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
ENKV E+ F+VVML+KSK +S A + S T + AP + P +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
+A P P AP A AP A S ++D YGQAASN+V+ ++LE T+
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNP 235
QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA A
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPA------- 233
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+T + A + PN++PL++FPQ + + G G+L+FLRN+ QFQALR MVQA
Sbjct: 234 DQETGSGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALRAMVQA 293
Query: 296 NPQILQ 301
NPQILQ
Sbjct: 294 NPQILQ 299
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 127/149 (85%), Positives = 135/149 (90%), Gaps = 3/149 (2%)
Query: 154 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
S +DVYGQAASNLVAGSNLEA +QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSG
Sbjct: 187 SETDVYGQAASNLVAGSNLEAIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSG 246
Query: 214 IPEQTAVPPVAR-ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
IPEQ VPPV R ++GGQ NPPAQ+Q QQPA APTSGPNANPLDLFPQGLPN+GSN
Sbjct: 247 IPEQAEVPPVTRPPASGGQPTNPPAQSQ-QQPAV-APTSGPNANPLDLFPQGLPNVGSNT 304
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQILQ 301
GAGTLDFLRNSQQFQALR MVQANPQILQ
Sbjct: 305 GAGTLDFLRNSQQFQALRAMVQANPQILQ 333
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 177/321 (55%), Positives = 214/321 (66%), Gaps = 31/321 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K K SSSGAS+ S AP +Q+Q P T P + P P +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQ-----PAT---PVAAATPPVPVAS 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-----DVYGQAASNLVAGSNLEAT 175
+S P A P AA PAP A A + P ++V+ DVY QAASNLV+G LE T
Sbjct: 113 AARSPPSQA-PVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQT 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGN 234
VQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA N
Sbjct: 172 VQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQN 231
Query: 235 PPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLPN------MGSNAGAGTLDFL 280
A +QAQ AAP P ++GPNANPL+LFPQG+P+ G AGAG LD L
Sbjct: 232 LQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDAL 289
Query: 281 RNSQQFQALRTMVQANPQILQ 301
R QFQAL +VQANPQILQ
Sbjct: 290 RQLPQFQALLALVQANPQILQ 310
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 161/304 (52%), Positives = 190/304 (62%), Gaps = 43/304 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQG---------- 50
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
+K SSS A S P+NQ APPT T P SQ P
Sbjct: 51 ---------------TNKGSSSAAPAKSKEPSNQ------APPTQTVPANPPSQAPVVPA 89
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P +AP P +PA A A VS+ ++ YGQAASNLVAG NLEAT+Q I
Sbjct: 90 PPAAAAPAPIVPISAPTPTATASPASAVA---VSTEAETYGQAASNLVAGGNLEATIQSI 146
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++ P
Sbjct: 147 LEMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQ------PADPV 200
Query: 240 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA Q PA +SGPNA+PLDLFPQ LPN +N AG G LD LRN+ QF++L ++VQANP
Sbjct: 201 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANP 260
Query: 298 QILQ 301
QILQ
Sbjct: 261 QILQ 264
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 177/321 (55%), Positives = 214/321 (66%), Gaps = 31/321 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K K SSSGAS+ S AP +Q+Q P T P + P P +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQ-----PAT---PVAAATPPVPVAS 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-----DVYGQAASNLVAGSNLEAT 175
+S P A P AA PAP A A + P ++V+ DVY QAASNLV+G LE T
Sbjct: 113 AARSPPSQA-PVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQT 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGN 234
VQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA N
Sbjct: 172 VQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQN 231
Query: 235 PPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLPN------MGSNAGAGTLDFL 280
A +QAQ AAP P ++GPNANPL+LFPQG+P+ G AGAG LD L
Sbjct: 232 LQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDAL 289
Query: 281 RNSQQFQALRTMVQANPQILQ 301
R QFQAL +VQANPQILQ
Sbjct: 290 RQLPQFQALLALVQANPQILQ 310
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 161/305 (52%), Positives = 191/305 (62%), Gaps = 41/305 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S + +S+QP S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSSGT------------------SSSQP---SNTPAARQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + Y AAS+L++GSN++ + Q+
Sbjct: 100 PPLDAPQQAPQPPVAPTTTSQPEGLPAQAP------PNTYDNAASSLLSGSNVDTMINQL 153
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 154 MEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPVTAEVAVP------IGGQGAN--- 204
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
T + P A SG PN PL+LFPQG N G AG G LDFLRN+QQFQA+R MV N
Sbjct: 205 -TTDRAPTGEAGLSGIPNTAPLNLFPQGGSNAGGGAGGGPLDFLRNNQQFQAVREMVHTN 263
Query: 297 PQILQ 301
PQILQ
Sbjct: 264 PQILQ 268
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 159/308 (51%), Positives = 190/308 (61%), Gaps = 57/308 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK S S ++ + +A T +++ TPA V
Sbjct: 61 DNKVTEDGFLVVMLSKSKTSGSSGTSSTQ---------PAAATPPTTAPSSNSTPAVEVQ 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + +D YG+AASNLVAG NLE T+QQI+
Sbjct: 112 PP-------------------------------TQTDTYGEAASNLVAGDNLEQTIQQIM 140
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAG--GQAGNPPA 237
DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA AG + G PA
Sbjct: 141 DMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVAHLPAGQATETGAAPA 200
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
AP SG PN++PL++FPQ GS G G+LDFLRN+ QFQ LR+MV
Sbjct: 201 ----------APLSGVPNSSPLNMFPQEALSAAGGGSAGGLGSLDFLRNNAQFQTLRSMV 250
Query: 294 QANPQILQ 301
QANPQILQ
Sbjct: 251 QANPQILQ 258
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 186/305 (60%), Gaps = 42/305 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
T + P A SG PN PLDLFPQG N G AG G LDFLRN+ QFQA+R MV N
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQGASNAGGGAGGGPLDFLRNNPQFQAVREMVHTN 262
Query: 297 PQILQ 301
PQILQ
Sbjct: 263 PQILQ 267
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 167/285 (58%), Gaps = 49/285 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK T SSA P+STQ AP+
Sbjct: 61 ENKVTEEGFLVVMLSKSK------------------TASSAGPSSTQ------LAAPSTT 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 97 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 142 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVG----------S 191
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 285
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + Q
Sbjct: 192 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQ 236
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/306 (50%), Positives = 182/306 (59%), Gaps = 43/306 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQFQALRTMVQA 295
T + P A SG PN PLDLFPQ + G LDFLRN+ QFQA+R MV
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQQGASNAGGGAGGGPLDFLRNNPQFQAVREMVHT 262
Query: 296 NPQILQ 301
NPQILQ
Sbjct: 263 NPQILQ 268
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 162/303 (53%), Positives = 191/303 (63%), Gaps = 38/303 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++EV P D V +VK+ IE QG + +P SQQ+LIHQGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNHFDLEVSPADTVLNVKRQIEDSQGKESFPCSQQLLIHQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+EN FVVVMLTK+K + +GAS PP+S+ T
Sbjct: 61 ENKVSENGFVVVMLTKAK-TGAGAS----------------PPSSSGTT----------- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q+ A P+P P + + YGQAASNLVAG+ LE TVQQI+
Sbjct: 93 --QAPAPVAAATPPAPARSPATPSPPTPATPAPAPASTYGQAASNLVAGNVLETTVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ--AGNPPAQ 238
DMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIPE + PV GG+ A
Sbjct: 151 DMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPESAEMRPV-----GGRSPAVAGVPA 205
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
PA AP GPNA PLDLFPQG+P M GAG LDFLRN+ Q +LRTMVQANPQ
Sbjct: 206 ATPAAPAQAAPAGGPNAAPLDLFPQGMPGMAGGGGAGALDFLRNNPQ-ASLRTMVQANPQ 264
Query: 299 ILQ 301
ILQ
Sbjct: 265 ILQ 267
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 155/313 (49%), Positives = 185/313 (59%), Gaps = 58/313 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GK+LKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQQNDTIMAVKKNIEEIQGKDNYPWGQQLLIHTGKILKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVS----------SSGASTVSAAPANQAQTTSSAPPTSTQPTT 110
EN+V+E+ +VVML+KSK S SS T A P Q Q S+ P PTT
Sbjct: 61 ENQVSEDGSLVVMLSKSKASVSSGASSAQPSSIPVTRQAPPDAQIQAAESSVP----PTT 116
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
TSQ P PA P+++V V AS+L++GS
Sbjct: 117 TSQPERP-----------------------------PAETPLNTVDHV----ASDLLSGS 143
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASA 228
NL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YLYSGIP + AVP
Sbjct: 144 NLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPVTAEVAVP------V 197
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
G Q N T A P + PN PL+LFPQG N G AG G+LDFLRN+QQFQA
Sbjct: 198 GPQGAN---STDAAPPGVTGLSGIPNTAPLNLFPQGASNAGGAAGGGSLDFLRNNQQFQA 254
Query: 289 LRTMVQANPQILQ 301
LR MV NPQILQ
Sbjct: 255 LREMVHTNPQILQ 267
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 154/306 (50%), Positives = 189/306 (61%), Gaps = 45/306 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQHNDTIMAVKKNIEEIQGKDSYPWGQQLLIHNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V E F+VVML+KSK ++S+ +S QP++T P +
Sbjct: 61 ENQVGEAGFLVVMLSKSK------------------ASASSGGSSAQPSST-----PVTS 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
V + P P PA P+S+V D+ AAS+L++GSNL+ + QI+
Sbjct: 98 QAPPVAQPQAPQPQVPSTTTSQPERPPAETPLSTV-DI---AASDLLSGSNLDTMINQIM 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQ 238
+MGGGSWDR+ V RALRAAYNNPERA++YLYSGIP + AVP V GQ N A
Sbjct: 154 EMGGGSWDRDKVQRALRAAYNNPERAIDYLYSGIPVTAEVAVPVV------GQGANTTA- 206
Query: 239 TQAQQPAAPAPT--SG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
AAP T SG PN PLDLFPQG + G AG G+LDFLRN+QQFQALR MV
Sbjct: 207 ------AAPGETGLSGIPNTAPLDLFPQGASHAGGAAGGGSLDFLRNNQQFQALREMVHT 260
Query: 296 NPQILQ 301
NPQILQ
Sbjct: 261 NPQILQ 266
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 162/301 (53%), Positives = 179/301 (59%), Gaps = 47/301 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGK
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGK--------- 51
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ G+S SAAPA T + APPT T P QT A A
Sbjct: 52 --------------------NKGSS--SAAPA--KTTANQAPPTQTVPVVPPQTSAAPAA 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SA A A A A D YGQAASNLVAGSNLE T+Q IL
Sbjct: 88 PAPIVPVSALAATATASAAPAVAVSTEA--------DSYGQAASNLVAGSNLEGTIQSIL 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP Q
Sbjct: 140 EMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQ 196
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQIL
Sbjct: 197 AAQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQIL 253
Query: 301 Q 301
Q
Sbjct: 254 Q 254
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/317 (44%), Positives = 179/317 (56%), Gaps = 54/317 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK S G++ ++ + S P ++ P T +
Sbjct: 61 ENKVTEEGFLVVMLSKSK--SGGSAGQASVQCVRLLLFHSLFPLPHLRLSSIYNPVFTCS 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++ +D YGQAAS LV+GS+LE VQQI+
Sbjct: 119 C------------------------FTYSCSRTTGTDTYGQAASTLVSGSSLEQMVQQIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 155 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 209
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT------ 291
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q L
Sbjct: 210 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQVAILTISAFSLN 262
Query: 292 ---MVQA----NPQILQ 301
M+Q NPQ+L+
Sbjct: 263 CEPMLQELGKQNPQLLR 279
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 145/285 (50%), Positives = 176/285 (61%), Gaps = 40/285 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL ENK+ E+ F+VVML+KSK
Sbjct: 35 VLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSK---- 90
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
AP + +++ T T + S+PE+ PA PA + A
Sbjct: 91 -------APGSTGSSSTQTTTIVPTTTPTPNS--------TSIPEA---PAQPAASRNVA 132
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
+ P ++ D YGQAASNLV+G+NLE T+Q+I+DMGGGSWDRETV RALRAAYNN
Sbjct: 133 ISDVPT---ANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNN 189
Query: 203 PERAVEYLYSGIPEQTAV-PPVARASAGGQAGNPPAQTQAQQPAAPAP--TSGPNANPLD 259
PERAV+YLYSGIPE V PVAR PP A AP + GPN++PL+
Sbjct: 190 PERAVDYLYSGIPETAEVAAPVAR---------PPTGQPIDAGGATAPPVSGGPNSSPLN 240
Query: 260 LFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
+FPQ G G+L+FLRN+ QFQALR+MVQANPQILQ
Sbjct: 241 MFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALRSMVQANPQILQ 285
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 123/147 (83%), Gaps = 6/147 (4%)
Query: 158 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
VYGQAAS+LVAGSNLE VQQILDMGGG+WDR+TV+RALRAAYNNPERA+EYLYSGIPEQ
Sbjct: 91 VYGQAASSLVAGSNLEVAVQQILDMGGGTWDRDTVVRALRAAYNNPERAIEYLYSGIPEQ 150
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQP--AAPAPTSGPNANPLDLFPQGLPNMGSNA-GA 274
PPVA GGQA P AQ Q Q P A P+ GPNANPLDLFPQGLPN+GS A GA
Sbjct: 151 AEAPPVAHMPLGGQA--PAAQPQ-QHPTQTAAVPSGGPNANPLDLFPQGLPNVGSGAGGA 207
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQ 301
GTLDFLRNSQQFQALR MVQANPQILQ
Sbjct: 208 GTLDFLRNSQQFQALRAMVQANPQILQ 234
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 94/174 (54%), Gaps = 23/174 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTLKG+ F+IEVKPED V+DVKK IET QG VYPA QQMLIHQ KVLKD TTL+
Sbjct: 1 MRIFVKTLKGSTFDIEVKPEDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQA---------------QTTSSAPPTS 105
ENK+ ENSFVV+ML+K + +S S S QA Q T
Sbjct: 61 ENKIVENSFVVIMLSKVRFASLVLSFESYYVYGQAASSLVAGSNLEVAVQQILDMGGGTW 120
Query: 106 TQPTTTSQTPAPTVAPPQS-------VPESAP-PPAAPAPAPAPAPAPAPAPAP 151
+ T A P ++ +PE A PP A P APA P P
Sbjct: 121 DRDTVVRALRAAYNNPERAIEYLYSGIPEQAEAPPVAHMPLGGQAPAAQPQQHP 174
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/232 (59%), Positives = 154/232 (66%), Gaps = 29/232 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI+V D V DVKKNIE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST-QPTTTSQTPAPTV 119
EN+VAENSF+V+ML+K+KVSSSGAS SAAP +S PP ST QP A TV
Sbjct: 61 ENQVAENSFIVIMLSKNKVSSSGASAASAAPPAVQPASSLPPPLSTPQPL------ASTV 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+S P P P SNL+AGS LE T+QQI
Sbjct: 115 GQGESNPAQGPVVTPPTTV----------------------VPESNLIAGSTLEPTIQQI 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 231
L+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ P VA ++ GQ
Sbjct: 153 LEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQAEAPAVAASTNVGQ 204
>gi|413926352|gb|AFW66284.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 296
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/267 (49%), Positives = 159/267 (59%), Gaps = 42/267 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQ 263
T + P A SG PN PLDLFPQ
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQ 229
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/212 (59%), Positives = 145/212 (68%), Gaps = 16/212 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SS SAAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSS------SAAPAK--VTANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SAP A A A A D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSAPAATATASAAPAVAVSTEA--------DSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYS
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYS 196
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 106/128 (82%), Gaps = 4/128 (3%)
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
+QQILDMGGGSWDR+TV+RALRAA+NNPERAV+YLYSGIPEQ PPV + A Q GN
Sbjct: 1 MIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPVTQMPASAQPGN 60
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMV 293
PPA A A P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MV
Sbjct: 61 PPA---AAPQLANVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQFQALRAMV 117
Query: 294 QANPQILQ 301
QANPQILQ
Sbjct: 118 QANPQILQ 125
>gi|194698296|gb|ACF83232.1| unknown [Zea mays]
gi|413926353|gb|AFW66285.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 185
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/213 (51%), Positives = 133/213 (62%), Gaps = 29/213 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
++MGGGSWD++ V RALRAAYNNPERAVEYLYS
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYS 185
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/149 (63%), Positives = 113/149 (75%), Gaps = 8/149 (5%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
SD YGQAASNLVAGS+LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 105 SDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIP 164
Query: 216 EQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG- 273
E V PVAR A + +T A A GPN++PL++FP+ L G +AG
Sbjct: 165 ETAEVAVPVARFPA-----DQGIETGAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGL 219
Query: 274 -AGTLDFLRNSQQFQALRTMVQANPQILQ 301
G+LDFLRN+QQFQALR+MVQANPQILQ
Sbjct: 220 VLGSLDFLRNNQQFQALRSMVQANPQILQ 248
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKV E+ F+VVML+K
Sbjct: 61 DNKVTEDGFLVVMLSK 76
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 112/156 (71%), Gaps = 5/156 (3%)
Query: 151 PVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210
P+S ++D YGQAASN+V+ ++LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YL
Sbjct: 157 PLSVLADTYGQAASNIVSANHLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDYL 216
Query: 211 YSGIPEQTAVP-PVARASAGGQAGNPPAQT----QAQQPAAPAPTSGPNANPLDLFPQGL 265
YSGIPE V PVA A + G + T + A + PN++PL++FPQ
Sbjct: 217 YSGIPEAAEVAVPVAHFPADQETGGINSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQET 276
Query: 266 PNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
+ + G G+L+FLRN+ QFQALR MVQANPQILQ
Sbjct: 277 LSGAAAGGLGSLEFLRNNHQFQALRAMVQANPQILQ 312
>gi|217069976|gb|ACJ83348.1| unknown [Medicago truncatula]
Length = 159
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 114/174 (65%), Positives = 125/174 (71%), Gaps = 20/174 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D +S VKKNIETVQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+KSK +S ST S AP + AP TS PT+T
Sbjct: 61 ENKVAENSFIVIMLSKSKPASGKGSTTSNAPP------AKAPQTSAAPTST--------- 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAG 169
PP SV AP A PA AP+PAPAPAP+SS SDVYGQAASNLVAG
Sbjct: 106 PPVSVSPQAPAATAAPPASVAAPSPAPAPAPISSATATEGSDVYGQAASNLVAG 159
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 106/150 (70%), Gaps = 13/150 (8%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D YGQAASNLVAGS+LE T+QQI+D+GGGSWDR+TV RALRAAYNNP+RAV+YLYS IP
Sbjct: 46 TDTYGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTVSRALRAAYNNPKRAVDYLYSRIP 105
Query: 216 E--QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG--PNANPLDLFPQGLPNMGSN 271
E + AVP A P +QT G PN++PL++ PQ +P G+
Sbjct: 106 EAAEIAVPA---------APYPISQTTETGGVTAGAVWGPVPNSSPLNMSPQVIPVSGAG 156
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
AG G+L+ + Q+FQALR+MVQ+NPQILQ
Sbjct: 157 AGIGSLELYKKCQEFQALRSMVQSNPQILQ 186
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 169/323 (52%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P S P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASSTPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|255636258|gb|ACU18469.1| unknown [Glycine max]
Length = 160
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/102 (72%), Positives = 87/102 (85%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
ENKV EN+F+V+ML+KSK S ST S AP+ +A TS+ P
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVP 102
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 172/328 (52%), Gaps = 57/328 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ T S T Q + P P
Sbjct: 61 EYKIEEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQ----APIPVPA 116
Query: 119 VAPPQSVPESAPPPAAPA---PAPAPA-----PAPAPAPAPV-------------SSVSD 157
+AP S P S PP +A A PAPA A PA PA PV SS S+
Sbjct: 117 LAPT-STPASIPPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSN 175
Query: 158 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-- 215
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD 232
Query: 216 -EQTAV--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
E AV PP A ++ Q+ A +SG G P
Sbjct: 233 RESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP------ 275
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQIL 300
L+FLRN QFQ +R ++Q NP +L
Sbjct: 276 ----LEFLRNQPQFQQMRQIIQQNPSLL 299
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 168/323 (52%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 168/323 (52%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 168/323 (52%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 166/323 (51%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ T S T Q APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 171/322 (53%), Gaps = 46/322 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K ++ A + +N A TT+ + T+T T S TPAP +A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQ-SNSATTTAVSSSTATAVTQAS-TPAPALA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPA-------PAPAPAPAPVSSV-------------SDVYG 160
P S P S P + + PAPA PA P PV++ S+++
Sbjct: 119 PT-STPASIAPASTTSSEPAPASATKQEKPAEKPVETPVATSPTSTDSTSGDSSRSNLFE 177
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 220
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 178 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP----- 229
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LD 278
G+ +Q + P A A T P ++ + + +G L+
Sbjct: 230 ------------GDRESQAVVEPPQA-AGTGAPQSSAVAAGAATTTATTTTTSSGGHPLE 276
Query: 279 FLRNSQQFQALRTMVQANPQIL 300
FLRN QFQ +R ++Q NP +L
Sbjct: 277 FLRNQPQFQQMRQIIQQNPSLL 298
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 166/322 (51%), Gaps = 45/322 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA------------STVSAAPANQAQTTSSAPPTSTQP 108
E K+ E +FVVVM+TK K ++ +TVS++PA A + P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTAVPATTQPSSTPSPTTVSSSPAVAAAQAPAPTPALAPT 120
Query: 109 TT-TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPAP--VSSVSDVYGQA 162
+T S TPA T A + P A P PA PA P +PAPA + SS S+++ A
Sbjct: 121 STPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 218
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
V P PP P +PA + + +G L+
Sbjct: 238 VVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLE 277
Query: 279 FLRNSQQFQALRTMVQANPQIL 300
FLRN QFQ +R ++Q NP +L
Sbjct: 278 FLRNQPQFQQMRQIIQQNPSLL 299
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 168/323 (52%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 168/323 (52%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 168/323 (52%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 168/323 (52%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 167/323 (51%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A P PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPTEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 167/323 (51%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+R VEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRGVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 113/319 (35%), Positives = 161/319 (50%), Gaps = 47/319 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKV------------SSSGASTVSAAPANQAQTTSSAPPTSTQP 108
E K+ E +FVVVM+TK K S++G S +AAP ++ P + P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAATAATTATQQTNSTTGVSVTTAAP---TPVSAPTPAAAPVP 117
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD-----VYGQAA 163
TPAP +S P S P PA PA AP + S+ D ++ A
Sbjct: 118 APDPTTPAPAAVACESEPVSTPKEEKPAEKPADAPTAVSLSSNESTTGDTSRSNLFEDAI 177
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVP 221
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 178 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAE 234
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
P AS G +Q+ AA T +P ++ G L+FLR
Sbjct: 235 PTQAASTG--------TSQSSAVAAAVAT--------------IPTTATSLGGHPLEFLR 272
Query: 282 NSQQFQALRTMVQANPQIL 300
N QFQ +R ++Q NP +L
Sbjct: 273 NQPQFQQMRQIIQQNPSLL 291
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 163/319 (51%), Gaps = 40/319 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTT------- 111
E K+ E +FVVVM+TK K ++ A+T + PA +SS P Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPT 120
Query: 112 ----SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQ 161
S TPAPT A + P SA P PA PA P A +P SS S+++
Sbjct: 121 PSPASVTPAPTTASSEPAPASATQPEKPAEKPAETPV-ATSPTATDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------ 230
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
G+ +Q P A + + P++ +N G L+FLR
Sbjct: 231 -----------GDRDSQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLR 279
Query: 282 NSQQFQALRTMVQANPQIL 300
N QFQ +R ++Q NP +L
Sbjct: 280 NQPQFQQMRQIIQQNPSLL 298
>gi|168046898|ref|XP_001775909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672741|gb|EDQ59274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 112/212 (52%), Gaps = 43/212 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG +F+++V P + V +VKK IE QG ++P +QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNYFDLDVTPLETVINVKKRIEDSQGEQLFPCAQQLLIYQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV EN F VVML+K+ ++ + N + Q +
Sbjct: 61 DNKVLENEFFVVMLSKT------SNILKQGLCNLSMRAFFCVKYLNQHS----------- 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A S +V NLVAG NLE+ Q+IL
Sbjct: 104 -----------------------GIGKGTAHFQSSRNV---CCFNLVAGINLESKAQEIL 137
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
D+GGGSWD +TV+ ALRAA NN ERA+EYL S
Sbjct: 138 DIGGGSWDFDTVVHALRAASNNVERALEYLSS 169
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 163/322 (50%), Gaps = 45/322 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA-------------STVSAAPANQAQTTSSAPPTSTQ 107
E K+ E +FVVVM+TK K +S + S+ A AQ + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPAP--VSSVSDVYGQA 162
T S TPA T A + P A P PA PA P +PAPA + SS S+++ A
Sbjct: 121 STPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 218
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
V P PP P +PA + + +G L+
Sbjct: 238 VVDP------------PPQAVSTGTPQSPAVAAAAATTT--------ATTTTTSGGHPLE 277
Query: 279 FLRNSQQFQALRTMVQANPQIL 300
FLRN QFQ +R ++Q NP +L
Sbjct: 278 FLRNQPQFQQMRQIIQQNPSLL 299
>gi|164665688|gb|ABY66298.1| RAD23-like protein [Brassica napus]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 149/307 (48%), Gaps = 83/307 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVK LKG FEI+V PED V DVKKNIETV G YPA++Q+LIH+GKVLKD TTL
Sbjct: 1 MKIFVKNLKGARFEIQVSPEDSVGDVKKNIETVMGVTAYPAAEQVLIHKGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N V+E S V+ + K K +S+G ST APA+ +A P ST
Sbjct: 61 ANNVSEKS--VIGVIKKKPASTGTST---APASLTALVHAAHPYST-------------- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AA P PA AASN S E+ +QQIL
Sbjct: 102 ------------AAETPVTPTEPA---------------WDAASNGNYESISESNIQQIL 134
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+M G+W RE V AL AY++ +A+EY+Y GIP ++ + + Q
Sbjct: 135 EMVRGAWSREAVAYALCLAYDDLNKALEYIYFGIPVKS-------------EDHYTTEEQ 181
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q+PA DL +LD LR++ +F+ LR +VQ++P +L
Sbjct: 182 TQEPAEA-----------DL-------------EWSLDSLRHTPEFEHLRPLVQSDPSLL 217
Query: 301 QQWALIV 307
+ L++
Sbjct: 218 MDFLLML 224
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 163/329 (49%), Gaps = 59/329 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPAP--VSSV 155
T S PA T A + P A P PA PA P +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+G L+FLRN QFQ +R ++Q NP +L
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLL 299
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 163/329 (49%), Gaps = 59/329 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPAP--VSSV 155
T S PA T A + P A P PA PA P +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+G L+FLRN QFQ +R ++Q NP +L
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLL 299
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 163/329 (49%), Gaps = 59/329 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPAP--VSSV 155
T S PA T A + P A P PA PA P +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+G L+FLRN QFQ +R ++Q NP +L
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLL 299
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 166/323 (51%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQLTFWIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P S + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASVTASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLL 299
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 163/329 (49%), Gaps = 59/329 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPAP--VSSV 155
T S PA T A + P A P PA PA P +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+G L+FLRN QFQ +R ++Q NP +L
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLL 299
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 163/329 (49%), Gaps = 59/329 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPAP--VSSV 155
T S PA T A + P A P PA PA P +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+G L+FLRN QFQ +R ++Q NP +L
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLL 299
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 164/322 (50%), Gaps = 44/322 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQ------------TTSSAPPTSTQ 107
E K+ E +FVVVM+TK K VS+ + +A +N + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPAAAAAQQSNPVTTTPVTSSTATTVAQAPTPAPAPA 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQ 161
T S TPA T P+ P SA PA PA P A +P P SS S+++
Sbjct: 121 STPVSVTPASTTTSPEPAPASATKQEKPAEKPAETPV-ATSPTPTDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------ 230
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPL---DLFPQGLPNMGSNAGAGTLD 278
G+ +Q P A A T P ++ + +++G L+
Sbjct: 231 -----------GDRESQAVVDPPQA-AGTGTPQSSAVAAAAATTTATTTTTTSSGGHPLE 278
Query: 279 FLRNSQQFQALRTMVQANPQIL 300
FLRN QFQ +R ++Q NP +L
Sbjct: 279 FLRNQPQFQQMRQIIQQNPSLL 300
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 162/320 (50%), Gaps = 44/320 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +T + A Q+ ++ +S+ T Q PAP V
Sbjct: 61 EYKIDEKNFVVVMVTKPK----AVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVL 116
Query: 121 PPQSVPESAPPPAAPAPAPAPA-------PAPAPAPAPV-------------SSVSDVYG 160
P P S P A + PAP PA PA PV SS S+++
Sbjct: 117 APTPSPASVTPAPATSSEPAPTSVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE 176
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 220
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 177 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP----- 228
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 280
G+ +Q P A + + P++ ++ G L+FL
Sbjct: 229 ------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFL 276
Query: 281 RNSQQFQALRTMVQANPQIL 300
RN QFQ +R ++Q NP +L
Sbjct: 277 RNQPQFQQMRQIIQQNPSLL 296
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 167/331 (50%), Gaps = 63/331 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT-----------------SSAPP 103
E K+ E +FVVVM+TK K + + APA Q++ +S P
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSSPVSTTTVSSSTATAVAQASTPA 114
Query: 104 TSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA---PAPAPV-------- 152
+ PT+ TPAP +AP + S P PA+ A PA PA PA +P
Sbjct: 115 PALAPTS---TPAP-IAPAVTTASSEPVPASAAQQEKPAEKPAETPPASSPTSTDNTSGD 170
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 171 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 227
Query: 213 GIP---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 269
GIP E AV +A++ G A T+ +P
Sbjct: 228 GIPGDRESQAVVDPPQAASTGAPQASAVAAAGATTTAATTTTSSGGHP------------ 275
Query: 270 SNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
L+FLRN QFQ +R ++Q NP +L
Sbjct: 276 -------LEFLRNQPQFQQMRQIIQQNPSLL 299
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 158/328 (48%), Gaps = 58/328 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT----------- 109
E K+ E +FVVVM+TK K + + APA Q+ S+A T + T
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPA 114
Query: 110 --------TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----S 156
S TPAPT A + P SA PA P P + S+ S
Sbjct: 115 PASAPTPTPVSVTPAPTTASSEPAPASAAKQEKPAERPVETPVATTPTSTDSTSGDSSRS 174
Query: 157 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 215
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 216 ---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
Q V P AS G + A +SG G P
Sbjct: 232 DRESQAVVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP------ 274
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQIL 300
L+FLRN QFQ +R ++Q NP +L
Sbjct: 275 ----LEFLRNQPQFQQMRQIIQQNPSLL 298
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 152/303 (50%), Gaps = 35/303 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ G +L DV L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGKDNFPVSGLKLIYAGVILNDVKPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E +++ +FVVVM TK K + + AA ++APP +T S+ P
Sbjct: 61 EYNISDKNFVVVMATKPKTAPAATQPSPAASG----PCTAAPPAPGACSTVSEVPTQQTT 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E P AAPA P + P A ++ +A SNLV G + E+ V +I+
Sbjct: 117 KEDNAEEKPPSTAAPASTPEGGGSEVPTNA------NLIDEAVSNLVTGPSYESMVNEIM 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG +DRE V+ ALRA++NNP+RAVEYL +GIP GQA A+
Sbjct: 171 LMG---YDREQVVVALRASFNNPDRAVEYLLTGIP----------GRDQGQAAGTTAEAT 217
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT---LDFLRNSQQFQALRTMVQANP 297
+ A AP G A P G GS+ GA L FLRN QFQ +R ++Q N
Sbjct: 218 SAGVAPAAPLGGLRA------PTG---TGSSTGAERVNPLSFLRNQPQFQQMRQLIQQNA 268
Query: 298 QIL 300
+L
Sbjct: 269 SLL 271
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/120 (65%), Positives = 86/120 (71%), Gaps = 10/120 (8%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P QA
Sbjct: 1 MGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQA 54
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQILQ
Sbjct: 55 VQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQILQ 110
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 161/323 (49%), Gaps = 48/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKV--------------SSSGASTVSAAPANQAQTTSSAPPTST 106
E K+ E +FVVVM+TK K +++ + S APA AQ + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPTTTQQSNPATTTTISSSTAPA-VAQVPTPTPALAP 119
Query: 107 QPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQ 161
PT S TPA T +S P SA PA PA P + S+ S+++
Sbjct: 120 TPTPASVTPASTTVSSESAPASATKQENPAEKPAETPVATSPTSTDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQ 217
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V P A+ G + A +SG G P L
Sbjct: 237 AVVDPPPAATTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------L 275
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 276 EFLRNQPQFQQMRQIIQQNPSLL 298
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 162/325 (49%), Gaps = 53/325 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-------------------TTSSA 101
E K+ E +FVVVM+TK K V+ APA Q + A
Sbjct: 61 EYKIDEKNFVVVMVTKPKA-------VTPAPATTQQSSPATTTTVSSSTAPAVAQAPTPA 113
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSV 155
P + P+ S TPAPT A + P SA P PA PA P A +P SS
Sbjct: 114 PALAPTPSPASITPAPTTASSEPAPASATQPEKPAEKPAETPV-ATSPTATDSTSGDSSR 172
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 173 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 229
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
G+ +Q P A + + P++ ++ G
Sbjct: 230 -----------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPGGH 272
Query: 276 TLDFLRNSQQFQALRTMVQANPQIL 300
L+FLRN QFQ +R ++Q NP +L
Sbjct: 273 PLEFLRNQPQFQQMRQIIQQNPSLL 297
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 159/309 (51%), Gaps = 29/309 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IEV P + V K+ IE +G D YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQTFKIEVDPSETVKVFKERIEEKKGKD-YPAHCQKLIYAGKILSDDSKMS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPT---STQPTTTSQTPAP 117
E ++ E FVV+M+TK K S A+ V+ P + S+ P+ TQP +Q PA
Sbjct: 60 EYEIDEKKFVVIMVTKPK-QSVDATAVTPGPGATSTVASAGTPSPAAGTQPAAEAQKPAE 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
T P +S PA +PA + A P P ++ + AAS LV G E VQ
Sbjct: 119 T---PSGTSKS------PAQSPAHSAATTPTSRPAAAETAGLAMAASALVMGDEYERMVQ 169
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-- 235
QI++MG ++R V RALRA++NNP+RAVEYL +GIP P A S G +
Sbjct: 170 QIMEMG---YERPQVERALRASFNNPDRAVEYLLTGIPPSQQDP--AEESHGATEESEEA 224
Query: 236 ----PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
P+ T P + T+G PL+ L G N L FLR QFQ +R
Sbjct: 225 PRSVPSDTAMSSPQSQHGTTGGGGGPLEA---ALAAEGGNP-EDPLAFLRFQPQFQQMRQ 280
Query: 292 MVQANPQIL 300
++Q NPQ+L
Sbjct: 281 VIQQNPQLL 289
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 166/300 (55%), Gaps = 32/300 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G +++ + Q LI+ GK+L D + L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVRTLKERIEQEKGKEIFSVAGQKLIYAGKILSDDSPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K + + + +AAPA +++AP + ++TS PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKKAPTASQPSTAAPA----PSTTAPAAQSDSSSTSDKPA---- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
QS + P + P+ A + + + +++ +A SNLV GS+ +A V +++
Sbjct: 113 -EQSSTDDKPEESQPSTTEASSTSVGRS----GDAANLISEAVSNLVTGSSYDAMVNEMM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP+RA+EYL +GIP + ++G A PPA
Sbjct: 168 LMG---YEREQVVAALRASFNNPDRAMEYLLTGIPSRN-----QGNASGRDAVAPPA--- 216
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ PA PA + AN + P+ G G L FLRN QFQ +R ++Q N +L
Sbjct: 217 SGTPAVPAGNASAPAN-----TRSSPSAG---GGNPLSFLRNQPQFQVMRQLIQQNAALL 268
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 118/303 (38%), Positives = 162/303 (53%), Gaps = 30/303 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+KV KT++G FE+E+ DK+ +VK+ IE VQG+D +PA+ Q++I+QGKVLKD TTLE
Sbjct: 4 VKVTFKTVQGNKFELELDSSDKIENVKQKIEGVQGAD-FPAANQVIIYQGKVLKDDTTLE 62
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN K++ V A +A + P + T + A A
Sbjct: 63 EN---------------KITHENFVVVMIQRARKAASPKKEEPAAPTTTAPAPAEAAPTA 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP P AA A A APA A ++S ++L+ G+ LE+T+ I+
Sbjct: 108 PAAEVPAQQPRAAAVPAAAAAAPAAGAAAGDLNS---------NSLLMGTQLESTIAGIV 158
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DRE V+RA+RAA+NNP+RAVEYL +GIP P A ++ A
Sbjct: 159 EMG---FDREEVVRAMRAAFNNPDRAVEYLMTGIPNNVEAPAPAPGASPAAGAVSAAPAA 215
Query: 241 AQQPAAPAPTSGPNANPLDLF--PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
P SGPNA PLD+F G+ AG LDFLR++ QF ALR +VQ+NP
Sbjct: 216 GTPATGGGPASGPNAQPLDMFAPQAPAGAGGAGGAAGPLDFLRSNPQFIALRQIVQSNPM 275
Query: 299 ILQ 301
ILQ
Sbjct: 276 ILQ 278
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 158/321 (49%), Gaps = 65/321 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K ++P+ QA T A P++ QP +T+ T P V+
Sbjct: 61 EYKIDEEKFVVVMITKPK----------SSPSVQAAATQPATPSTPQPASTTPT-VPPVS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-------------------APAPAPVSSVSDVYGQ 161
P + E+ P + A P A SS+ DV
Sbjct: 110 SPTATTETVPTNTSNELNTAEKPTEKSDEISTSTSTSPSASTIRTSGGAQGSSLFDV--- 166
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAV 220
A S LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP E+T
Sbjct: 167 ATSALVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERT-- 221
Query: 221 PPVARASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
R+S Q A T + QPAAPAPTS N L+F
Sbjct: 222 ----RSSVNNPQQTTGTAWTGSAQPAAPAPTSRENP---------------------LEF 256
Query: 280 LRNSQQFQALRTMVQANPQIL 300
LRN QF +R ++Q NP +L
Sbjct: 257 LRNQPQFHQMRQILQQNPSLL 277
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 163/316 (51%), Gaps = 55/316 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K ++P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPK----------SSPSVQAAATQPATPSTPQPASTTPTVPPASS 110
Query: 121 P---PQSVP-------ESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASN 165
P ++VP +A P + + + + +P+ + + + S ++ A S
Sbjct: 111 PTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSA 170
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR
Sbjct: 171 LVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----AR 222
Query: 226 ASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 223 SSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP 261
Query: 285 QFQALRTMVQANPQIL 300
QF +R ++Q NP +L
Sbjct: 262 QFHQMRQILQQNPSLL 277
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 162/316 (51%), Gaps = 55/316 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPTVPPASS 110
Query: 121 P---PQSVP-------ESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASN 165
P ++VP +A P + + + + +P+ + + + S ++ A S
Sbjct: 111 PTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSA 170
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR
Sbjct: 171 LVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----AR 222
Query: 226 ASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 223 SSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP 261
Query: 285 QFQALRTMVQANPQIL 300
QF +R ++Q NP +L
Sbjct: 262 QFHQMRQILQQNPSLL 277
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 162/316 (51%), Gaps = 55/316 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPTVPPASS 110
Query: 121 P---PQSVP-------ESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASN 165
P ++VP +A P + + + + +P+ + + + S ++ A S
Sbjct: 111 PTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSGLFDVATSA 170
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR
Sbjct: 171 LVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----AR 222
Query: 226 ASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 223 SSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP 261
Query: 285 QFQALRTMVQANPQIL 300
QF +R ++Q NP +L
Sbjct: 262 QFHQMRQILQQNPSLL 277
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 164/319 (51%), Gaps = 40/319 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K ++ A+T + PA +S+ P Q T+ APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVSSV-------------SDVYGQA 162
P P S + PAPA A PA PA PV++ S+++ A
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 222
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------- 230
Query: 223 VARASAGGQAGNPPA-QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
+ PPA T A Q + A + A+ P G P L+FLR
Sbjct: 231 -GDRESQAVVDTPPAVSTGAPQSSVAAAAATTTASTTTASPGGHP----------LEFLR 279
Query: 282 NSQQFQALRTMVQANPQIL 300
N QFQ +R ++Q NP +L
Sbjct: 280 NQPQFQQMRQIIQQNPSLL 298
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/324 (34%), Positives = 169/324 (52%), Gaps = 46/324 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++ A + + + TTS+ ++ + TP+P +A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAATSAPSPATTQQSIPATTSTVSSSTAASVAQAPTPSPALA 120
Query: 121 PPQS---------------VPESAPPPAAPAPAPAPAP---APAPAPAPV--SSVSDVYG 160
P + +P SAP PA P AP +P + + + SS S+++
Sbjct: 121 PTPTPTSVTPTPAAAVCEPIPTSAPKEEKPAEKPVEAPIGVSPTSSDSTLGDSSRSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----E 216
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDREN 237
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
Q+ V P AS G + A A A T+ +P
Sbjct: 238 QSVVDPPQAASTGAAQSSAVAAAAATTTATTTTTTTSGGHP------------------- 278
Query: 277 LDFLRNSQQFQALRTMVQANPQIL 300
L+FLRN QFQ +R ++Q NP +L
Sbjct: 279 LEFLRNQPQFQQMRQIIQQNPSLL 302
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 87/120 (72%), Gaps = 6/120 (5%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP QA
Sbjct: 1 MGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQA 57
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQILQ
Sbjct: 58 AQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQILQ 114
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 101/153 (66%), Gaps = 15/153 (9%)
Query: 151 PVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210
P+++V V AS+L++GSNL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YL
Sbjct: 97 PLNTVDHV----ASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYL 152
Query: 211 YSGIP--EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 268
YSGIP + AVP V + + T A P + PN PL LFPQ N
Sbjct: 153 YSGIPVTAEVAVPVVPQGA---------NSTDATPPGVTGLSGIPNTAPLSLFPQWASNA 203
Query: 269 GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
G AG G+LDFLRN+QQFQALR MV NPQILQ
Sbjct: 204 GGAAGGGSLDFLRNNQQFQALREMVHTNPQILQ 236
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 157/301 (52%), Gaps = 45/301 (14%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +
Sbjct: 101 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 160
Query: 82 S---GASTVSAAPANQAQTTSSA--------PPTSTQPTTT--SQTPAPTVAPPQSVPES 128
+ + S PA A ++S+A P ++ PT+T S TPA T + P S
Sbjct: 161 TPVPATTQQSNTPATTAVSSSTATVVAQAPTPTPASAPTSTPASTTPASTTVSSEPAPAS 220
Query: 129 APPPAAPAPAPAPAP---APAPAPAP--VSSVSDVYGQAASNLVAGSNLEATVQQILDMG 183
A P PA PA +P +PAPA + SS S+++ A S LV G + E V +I+ MG
Sbjct: 221 AAQPEKPAEKPAQSPVVTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 280
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP Q V P PP
Sbjct: 281 ---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------------PPQAV 325
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
P +PA + S+AG L+FLRN QFQ +R ++Q NP +
Sbjct: 326 STGTPQSPAVAAAAATT--------TATTTSSAGGHPLEFLRNQPQFQQMRQIIQQNPSL 377
Query: 300 L 300
L
Sbjct: 378 L 378
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 160/322 (49%), Gaps = 46/322 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA-------------STVSAAPANQAQTTSSAPPTSTQ 107
E K+ E +FVVVM+TK K ++ A + S+ AQ + AP +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPT 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQA 162
PT S TPA T A + P SA PA PA P + S+ S+++ A
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 218
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
V P AS G + A +SG G P L+
Sbjct: 238 VVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------LE 276
Query: 279 FLRNSQQFQALRTMVQANPQIL 300
FLRN QFQ +R ++Q NP +L
Sbjct: 277 FLRNQPQFQQMRQIIQQNPSLL 298
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 154/334 (46%), Gaps = 66/334 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G+D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK--------------------------------VSSSGASTVS 88
E K+ E +FVVVM+TK K ++ A
Sbjct: 61 EYKIDEKNFVVVMVTKPKGAACPSAPSPAVSQPVSAAAPAPASPPLTYTPIARQNAPIPL 120
Query: 89 AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE--SAPPPAAPAPAPAPAPAPA 146
P ++ A PTS TTT AP + PE + PP +P+ P
Sbjct: 121 PVPLPLPTVSAPAAPTSELSTTT--------APKEEKPEEKTVSPPETESPSSTECSLPT 172
Query: 147 PAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 206
+ P ++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RA
Sbjct: 173 DSSRP-----SLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRA 224
Query: 207 VEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP 266
VEYL GIP + + GQA P + + P P P + A
Sbjct: 225 VEYLLMGIP----------SDSEGQAVAEPPEALSSTPTEPLPVAAGAAA------TTTV 268
Query: 267 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ G LDFL+N QFQ +R ++Q NP +L
Sbjct: 269 PSTPSTGGNPLDFLQNQPQFQQMRQIIQQNPSLL 302
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 152/310 (49%), Gaps = 43/310 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPA---------NQAQTTSSAPPTSTQPTTT 111
E K+ E FVVVM+TK K SS + PA ++ PT+T T
Sbjct: 61 EYKIDEEKFVVVMITKPK-SSPSVQAAATQPATPSTPQPATTTPTVPPASSPTATTETVP 119
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSN 171
+ T + +S + + +P+ + A SS+ DV A S LV G
Sbjct: 120 TNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDV---ATSALVTGQQ 176
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG- 230
E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR+S
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----ARSSVNNP 228
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q A T + QPAAPAPTS N L+FLRN QF +R
Sbjct: 229 QQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQPQFHQMR 267
Query: 291 TMVQANPQIL 300
++Q NP +L
Sbjct: 268 QILQQNPSLL 277
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 162/327 (49%), Gaps = 58/327 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I+V D V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQIFKIDV---DLVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA--------------------STVSAAPANQAQTTSS 100
E K+ E +FVVVM+TK K ++ A + V+ AP +
Sbjct: 58 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSSPASTTTVSSSSATAVAQAPTPAPALAPT 117
Query: 101 APPTSTQP--TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDV 158
+ P S P TT S PAP A Q P P A P A +PA + SS S++
Sbjct: 118 SAPASIAPAVTTVSSEPAPASAAQQEKPSEKP---AETPV-ASSPASTDNTSGDSSRSNL 173
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--- 215
+ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 FEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDR 230
Query: 216 EQTAV--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
E AV PP A ++ Q+ A A +SG G P
Sbjct: 231 ESQAVVDPPQAASTGAPQSSAVAAAAATTTAATTTTSSG-----------GHP------- 272
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQIL 300
L+FLRN QFQ +R ++Q NP +L
Sbjct: 273 ---LEFLRNQPQFQQMRQIIQQNPSLL 296
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 160/323 (49%), Gaps = 53/323 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K + G+ EVK +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MSLKKKKVSGSVCRREVKA------LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 54
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 55 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 114
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 115 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 174
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 175 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 231
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 232 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 270
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FLRN QFQ +R ++Q NP +L
Sbjct: 271 EFLRNQPQFQQMRQIIQQNPSLL 293
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 155/316 (49%), Gaps = 44/316 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDETALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++G + P+N T S T PAP A
Sbjct: 61 EYKIDEKNFVVVMVTKPK-AAAGVT----QPSNATSTVGSTTAAPTAVAAPIPVPAPVPA 115
Query: 121 PPQSVPESAPPPAAPAPAPAP----------------APAPAPAPAPVSSVSDVYGQAAS 164
P P PAP P +P+ + +S S+++ A S
Sbjct: 116 PVPPPPAPDAVACEPAPVSTPKEEKPEEKPPEAPAAVSPSSIDSTTGDTSRSNLFEDAIS 175
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 176 ALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP--------- 223
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
QA P Q P T ++ + +P S+ G L+FLRN
Sbjct: 224 ---GDNQAVADPPQ--------PPSTGASQSSAVAAAVATIPTTTSSLGGHPLEFLRNQP 272
Query: 285 QFQALRTMVQANPQIL 300
QFQ +R ++Q NP +L
Sbjct: 273 QFQQMRQIIQQNPSLL 288
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 152/301 (50%), Gaps = 47/301 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 300 L 300
L
Sbjct: 278 L 278
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 152/301 (50%), Gaps = 47/301 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 300 L 300
L
Sbjct: 278 L 278
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 160/323 (49%), Gaps = 77/323 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P++ V +K+ IE +G + +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPDETVRVLKEKIEAEKGKEAFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K T S AP + + + A PT+ +PT +S A TV+P
Sbjct: 65 KIDEKNFVVVMVTKNK-------TGSGAPVS---SPTDAAPTA-EPTPSSGPTAATVSPL 113
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQ---AASNLVAGSNLEATVQ 177
Q+ P S P P + +P + V SV S G+ AAS LV GS E +
Sbjct: 114 QASPSSEEKP------PEESVTVSPLESTVGSVPSSGSMGREDDAASTLVTGSEYETMLT 167
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP G + A
Sbjct: 168 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP--------------GSSEPERA 210
Query: 238 QTQAQQPA-APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--- 293
Q QP PAP G L+FLR+ QFQ +R ++
Sbjct: 211 PIQESQPQDQPAP----------------------EGENPLEFLRDQPQFQNMRQVIQQN 248
Query: 294 ------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 249 PALLPALLQQLGQENPQLLQQIS 271
>gi|242079575|ref|XP_002444556.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
gi|241940906|gb|EES14051.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
Length = 184
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 117/198 (59%), Gaps = 25/198 (12%)
Query: 77 SKVSSSGASTVSAA--PANQAQTTS--SAP--PTSTQPTTTSQTPAPTVAPPQSVPESAP 130
+K SSSGAST +AA PA Q +AP P ++ T +Q P T
Sbjct: 1 AKASSSGASTATAAKVPATPGQVCGHPAAPVVPATSVARTPTQAPVAT------------ 48
Query: 131 PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRE 190
A AP A A A S +DVY QAASNLV+G+NLE +QQILDMGGG+W+R+
Sbjct: 49 --AETAPPSAQPQAAPAATLAASGDADVYSQAASNLVSGNNLEQIIQQILDMGGGTWERD 106
Query: 191 TVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PPAQTQAQQPAA 246
TV+RALRAAYNNPERA++YLYSGIP PPVA A AGGQ N PAQ P
Sbjct: 107 TVVRALRAAYNNPERAIDYLYSGIPVNVETPPVAGAPAGGQQTNQQAPSPAQPAVASPVQ 166
Query: 247 PAPTSG-PNANPLDLFPQ 263
P+ S P+ANPL LFPQ
Sbjct: 167 PSAASARPDANPLILFPQ 184
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 150/301 (49%), Gaps = 47/301 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ T S T Q APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 300 L 300
L
Sbjct: 278 L 278
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 152/301 (50%), Gaps = 47/301 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 237
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 238 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 276
Query: 300 L 300
L
Sbjct: 277 L 277
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 148/297 (49%), Gaps = 40/297 (13%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 60
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTT-----------SQTPAPTVAPPQSVPESA 129
A+T + PA +SS P Q S TPAPT A + P SA
Sbjct: 61 PAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPTPSPASVTPAPTTASSEPAPASA 120
Query: 130 PPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQAASNLVAGSNLEATVQQILDMG 183
P PA PA P A +P SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TQPEKPAEKPAETPV-ATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 179
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 243
++RE VI ALRA++NNP+RAVEYL GIP G+ +Q
Sbjct: 180 ---YEREQVIAALRASFNNPDRAVEYLLMGIP-----------------GDRDSQAVVDT 219
Query: 244 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
P A + + P++ +N G L+FLRN QFQ +R ++Q NP +L
Sbjct: 220 PPAVSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLRNQPQFQQMRQIIQQNPSLL 276
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 160/331 (48%), Gaps = 50/331 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDIALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP----- 115
E K+ E +FVVVM+TK K GAS S+AP+ +SA + + TP
Sbjct: 61 EYKIDEKNFVVVMVTKPK----GAS-CSSAPSPATSQPASAASPAPASPPLTYTPIARQN 115
Query: 116 APTVAP-PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS------------------ 156
AP P P S+P + P PAAP P+ AP +VS
Sbjct: 116 APIPLPVPFSLP-TVPTPAAPTSEPSTTTAPEEEKPEEKTVSPPETVSPSSTECSLPTDS 174
Query: 157 ---DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 175 SRPSIFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 231
Query: 214 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
IP + QA P + + P P + P PL + +
Sbjct: 232 IP----------SDREDQAVAEPPEALSSTPTLTPPLTQPLTQPLPAAAGAAATTTTPST 281
Query: 274 AGT----LDFLRNSQQFQALRTMVQANPQIL 300
T LDFL+N QFQ +R ++Q NP +L
Sbjct: 282 PSTGGNPLDFLQNQPQFQQMRQIIQQNPSLL 312
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 157/324 (48%), Gaps = 76/324 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFLPAPTSGM- 111
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-- 293
++QPA A AG L+FLR+ QFQ +R ++
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 294 -------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 251 NPALLPALLQQLGQENPQLLQQIS 274
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 158/328 (48%), Gaps = 76/328 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-- 293
++QPA A AG L+FLR+ QFQ +R ++
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 294 -------------QANPQILQQWALIVP 308
Q NPQ+LQ AL P
Sbjct: 251 NPALLPALLQQLGQENPQLLQLKALGFP 278
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 162/354 (45%), Gaps = 79/354 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-------------------------------VSDVKKN 29
M+V +KTL+ F+I++ PE+ V +K+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETHVQQKFSTLSEAPTLCPAPLFGLGTPTNSIIVKALKEK 60
Query: 30 IETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGA----- 84
IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++ A
Sbjct: 61 IESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAPATTQ 120
Query: 85 ---------STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAP 135
+ S APA AQT + P + PT S TPA T A + P SA P
Sbjct: 121 QSNSATTTTVSSSTAPAV-AQTPTPTPALAPTPTPASITPASTTASSEPAPASATKQENP 179
Query: 136 APAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRE 190
A PA P + S+ S+++ A S LV G + E V +I+ MG ++RE
Sbjct: 180 AEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YERE 236
Query: 191 TVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAA 246
VI ALRA++NNP+RAVEYL GIP Q V P AS G + A
Sbjct: 237 QVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSSVAAAAATTTATT 296
Query: 247 PAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+SG G P L+FLRN QFQ +R ++Q NP +L
Sbjct: 297 TTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSLL 329
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 145/304 (47%), Gaps = 46/304 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV E+ FVVVM VS T A A + S P T+PTT ++P V
Sbjct: 60 DYKVTESGFVVVM----SVSKPSKDTTKEASA----SVQSNPTGETKPTTDKKSP---VT 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S P + + P AP SS + G S+LV G N E V++++
Sbjct: 109 EANEAPSSKPDANSQSNLPTVTTAP-------SSATSTLGFGESSLVTGENFERVVKELM 161
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R VI+A+RA +NNP+RA EYL SG IP V ++
Sbjct: 162 SMG---FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREES 208
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
++ P P T P G ++GS L L QFQ +R +VQANP++
Sbjct: 209 ESVSPEGPGDTDTP----------GSESLGSEDPIAALASL---PQFQQMRALVQANPEL 255
Query: 300 LQQW 303
L Q
Sbjct: 256 LPQL 259
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 163/308 (52%), Gaps = 39/308 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S+ A S++ ++ + TT+SA +
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSA------------- 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS----DVYGQAASNLVAGSNLEATV 176
V ES P+ PAPA PVSS S +++ +A S LV G + E V
Sbjct: 108 --APVSESPSEEEKKPSEEKPSSDPAPATTPVSSGSLPNANIFEEATSALVTGQSYENMV 165
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP + V A +G+ P
Sbjct: 166 TEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTP 222
Query: 237 AQTQAQQPAAPAPTSGPN----ANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
A A PA S P+ A P S +GA L+FLRN QF +R +
Sbjct: 223 ASAPA--PAISTGLSSPSSTAPAQP-----------SSASGANPLEFLRNQPQFLQMRQI 269
Query: 293 VQANPQIL 300
+Q NP +L
Sbjct: 270 IQQNPSLL 277
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 130/400 (32%), Positives = 181/400 (45%), Gaps = 103/400 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F IE+ PE V +K+ IE +G D +P+ Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFRIEIDPELTVKALKEKIEEHRGKDAFPSVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSS---------------------------SG---------A 84
E K+ E +FVVVM+TK K +S SG
Sbjct: 62 EYKIDEKNFVVVMVTKPKPTSPAEAATHSVPTPAATPVPPPAAAPAPASGPKQVPSTPTH 121
Query: 85 STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAP------- 137
+T +A PA+Q+ S APP+ + TT + A S ESAP + AP
Sbjct: 122 TTSAAVPASQSVPPSEAPPSVQENTTVASVGATAKPTLDSHSESAPASGSTAPVASSTAP 181
Query: 138 -----APAPAPAPAPAPA-------------------PV----SSVSDVYG---QAASNL 166
APA P+ +P PA PV SS+ D G +AAS L
Sbjct: 182 EAVEEAPALVPSDSPTPAAQTEEELREDPENEPSDTAPVQSSASSLVDELGLLEEAASIL 241
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V G E V +I+ +G ++RE V+ ALRA+YNNP+RAVEYL GIP + + +
Sbjct: 242 VTGPEYENLVSEIMSIG---YEREQVVAALRASYNNPDRAVEYLLMGIPARASDLHNPQP 298
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS---NAGAGT------L 277
S NP + + P P N +++F QG P GS AG G+ L
Sbjct: 299 SRHSTPANPSTPSTEEPPQQPPAPPSSVINDVEVF-QG-PVSGSQPVTAGGGSGSIGNPL 356
Query: 278 DFLRNSQQFQALRTMVQA---------------NPQILQQ 302
+FLRN QFQ +R ++Q NPQ+LQQ
Sbjct: 357 EFLRNQPQFQQMRQIIQQNPALLPALLQQLGRDNPQLLQQ 396
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 158/324 (48%), Gaps = 77/324 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ APA +P V S + AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-- 293
++QPA + AG L+FLR+ QFQ +R ++
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 294 -------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 250 NPALLPALLQQLGQENPQLLQQIS 273
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 149/304 (49%), Gaps = 60/304 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K A SSAPP ++ PT ++ A + A P
Sbjct: 65 RIDEKNFVVVMVTKAK----------------AGQGSSAPPEAS-PTAAPESSATSPAAP 107
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
S PP +P+ AP +P VS G AAS LV GS E +
Sbjct: 108 ASGMSHPPPATREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
++QPA + AG L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
Query: 297 PQIL 300
P +L
Sbjct: 251 PALL 254
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 151/301 (50%), Gaps = 47/301 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P S + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPTSTPASITPASVTASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 300 L 300
L
Sbjct: 278 L 278
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 153/321 (47%), Gaps = 62/321 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA A AG L+FLR+ QFQ +R ++
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 294 ------QANPQILQQWALIVP 308
Q NPQ+LQ AL P
Sbjct: 258 LLQQLGQENPQLLQLKALGFP 278
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 146/306 (47%), Gaps = 58/306 (18%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 1 VRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 56
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPT-------------------TTSQTPAPTVAPPQ 123
+ + APA Q+ S+A T + T S TPAPT A +
Sbjct: 57 --AVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPTPTPVSVTPAPTTASSE 114
Query: 124 SVPESAPPPAAPAPAP-----APAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P SA PA P A PA + + SS S+++ A S LV G + E V +
Sbjct: 115 PAPASAAKQEKPAEGPVETPVATTPASTDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 174
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGN 234
I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 175 IMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSS 231
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
A +SG G P L+FLRN QFQ +R ++Q
Sbjct: 232 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQ 270
Query: 295 ANPQIL 300
NP +L
Sbjct: 271 QNPSLL 276
>gi|164665690|gb|ABY66299.1| DNA repair protein RAD23 [Brassica napus]
Length = 327
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 136/297 (45%), Gaps = 95/297 (31%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG FEI+V ED V+DVKKNIETV G A++QMLIH+GKVL+D TT+E
Sbjct: 1 MKIFVKTLKGDRFEIQVNLEDSVADVKKNIETVMG---VTAAEQMLIHKGKVLEDETTME 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N+V+E S + VM K + + S+ S P QA A P+ST T
Sbjct: 58 ANEVSEKSIIAVMKRKHASTVTSTSSASLKPQVQA-----AHPSSTASNMTY-------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+S+ ES +QQIL
Sbjct: 105 --ESISESG----------------------------------------------IQQIL 116
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+M G+W RE V AL A N+ ++AVEYLY G+PEQ+ P +T+
Sbjct: 117 EMVSGTWSREAVAYALYFASNDLDKAVEYLYFGLPEQSE---------------DPHKTE 161
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q P + +A +LD LRN+ +F+ +R +VQ++P
Sbjct: 162 GTQEHTQEPEASQDA----------------IQEWSLDALRNTPEFEYVRPLVQSDP 202
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 157/324 (48%), Gaps = 76/324 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-- 293
++QPA A AG L+FLR+ QFQ +R ++
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 294 -------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 251 NPALLPALLQQLGQENPQLLQQIS 274
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 157/324 (48%), Gaps = 76/324 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 10 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 70 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 116
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 117 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 172 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 218
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-- 293
++QPA A AG L+FLR+ QFQ +R ++
Sbjct: 219 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 255
Query: 294 -------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 256 NPALLPALLQQLGQENPQLLQQIS 279
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 153/321 (47%), Gaps = 62/321 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSQPSPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA A AG L+FLR+ QFQ +R ++
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 294 ------QANPQILQQWALIVP 308
Q NPQ+LQ AL P
Sbjct: 258 LLQQLGQENPQLLQLKALGFP 278
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 154/331 (46%), Gaps = 49/331 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VK+L G +F I+V+P D V VK+ I+ QG +PA Q LI+ GK+L D +
Sbjct: 1 MKLLVKSLAGGNFHIDVEPSDSVGSVKQKIQASQG---HPAENQKLIYSGKILADEKNMG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
E ++ E F+VVM++K K + +A ++ + A +T + S TPA P
Sbjct: 58 EYEIKEKDFLVVMVSKPKAKKVESDKPVSADSSAQAAPAPASAAATGESALSATPAKPKA 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + S P AA A + PAP+ P ++ + ++G+ LE V I
Sbjct: 118 ESPATPAASTPAEAAGASSSNLPSTPAPSNGPTNASGSTGSLQTGSFLSGAELETAVSSI 177
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP----------------- 222
++MG + +E V RA+R ++NNP+RAVEYL +G+P++TA P
Sbjct: 178 IEMG---FSKEDVQRAMRMSFNNPDRAVEYLMNGLPDETAAAPSRTTGVPATPATPSPAP 234
Query: 223 ------------VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 270
RA GQ+GN Q A Q SG N +GL
Sbjct: 235 VTSMQETPTGAGAGRAPNAGQSGNLFEQAAAMQ-------SGTNRA-----SEGLLGEED 282
Query: 271 NAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
G LD L N Q LRT+++ NP LQ
Sbjct: 283 AQGRQILD-LGNPQVLSQLRTLLEQNPAALQ 312
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 155/328 (47%), Gaps = 76/328 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK----AVQGTSAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 112 -----SHPPPAAGEDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-- 293
++QPA A AG L+FLR+ QFQ +R ++
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 294 -------------QANPQILQQWALIVP 308
Q NPQ+LQ AL P
Sbjct: 251 NPALLPALLQQLGQENPQLLQLKALGFP 278
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 152/317 (47%), Gaps = 62/317 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA A AG L+FLR+ QFQ +R ++
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 294 ------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 258 LLQQLGQENPQLLQQIS 274
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 147/298 (49%), Gaps = 44/298 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 57
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+T + A Q+ ++ +S+ T Q PAP V P P S P A + PAP
Sbjct: 58 AVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTPSPASVTPAPATSSEPAPT 117
Query: 143 -------PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDM 182
PA PA PV SS S+++ A S LV G + E V +I+ M
Sbjct: 118 SVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 177
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE VI ALRA++NNP+RAVEYL GIP G+ +Q
Sbjct: 178 G---YEREQVIAALRASFNNPDRAVEYLLMGIP-----------------GDRESQAVVD 217
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
P A + + P++ ++ G L+FLRN QFQ +R ++Q NP +L
Sbjct: 218 TPPAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFLRNQPQFQQMRQIIQQNPSLL 275
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 157/324 (48%), Gaps = 77/324 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 82 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 128
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 129 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 183
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 184 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 230
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-- 293
++QPA + AG L+FLR+ QFQ +R ++
Sbjct: 231 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 266
Query: 294 -------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 267 NPALLPALLQQLGQENPQLLQQIS 290
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 157/324 (48%), Gaps = 77/324 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-- 293
++QPA + AG L+FLR+ QFQ +R ++
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 294 -------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 250 NPALLPALLQQLGQENPQLLQQIS 273
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 157/324 (48%), Gaps = 77/324 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGRGEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-- 293
++QPA + AG L+FLR+ QFQ +R ++
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 294 -------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 250 NPALLPALLQQLGQENPQLLQQIS 273
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 154/324 (47%), Gaps = 76/324 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK----AVQGTSAPP--------EASPTAAPESSTSFPPAPTSGM- 111
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 112 -----SHPPPAAGEDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-- 293
++QPA A AG L+FLR+ QFQ +R ++
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 294 -------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 251 NPALLPALLQQLGQENPQLLQQIS 274
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 152/317 (47%), Gaps = 63/317 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA + AG L+FLR+ QFQ +R ++
Sbjct: 221 QPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 294 ------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 257 LLQQLGQENPQLLQQIS 273
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 154/332 (46%), Gaps = 93/332 (28%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK K +G T+ APP + PT AP
Sbjct: 65 RIDEKNFVVVMVTKGK---AGQGTL-------------APPEIS----------PTAAPE 98
Query: 123 QSVP---ESAPPPAAPAPAPAPAPAPAPAPAPVSS------------VSDVYGQAASNLV 167
S P SAP + P+PA +P+ AP +S S AAS LV
Sbjct: 99 PSAPFQLTSAPGMSHPSPATRDDKSPSEESAPTASPESVSGSVPSSGSSGREEDAASTLV 158
Query: 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 227
GS E + +I+ MG +DRE V+ ALRA+YNNP RAVEYL +GIP S
Sbjct: 159 TGSEYETMLTEIMSMG---YDRERVVAALRASYNNPHRAVEYLLTGIP----------GS 205
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
+ G+ ++QPA + AG L+FLR+ QFQ
Sbjct: 206 PEPEHGSIQESQASEQPA------------------------TEAGENPLEFLRDQPQFQ 241
Query: 288 ALRTMV---------------QANPQILQQWA 304
++R ++ Q NPQ+LQQ +
Sbjct: 242 SMRQVIQQNPALLPALLQQLGQENPQLLQQIS 273
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 157/328 (47%), Gaps = 87/328 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKT+ G E+E +P + ++D+K IE S P ++ +IH G+VL+D +
Sbjct: 1 MKVIVKTMAGLQTEMEFEPTNTLADLKTKIEGQMSSLGGPVNK--IIHMGRVLEDGKPIS 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS-APPTSTQPTTTSQTPAPTV 119
E VA+ + V+M++K K PA + Q +S AP + +P+T + P
Sbjct: 59 EYGVADGNTFVIMVSKKK------------PAQEPQPSSEPAPSAAPKPSTPATEAPPAA 106
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
Q + PAP PA + AP+ AP S+ S Y +AS L+ G +LEATV QI
Sbjct: 107 PAVQP--------SQPAPPSTPAQS-APSTAPASTTS--YDASASALLTGESLEATVMQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----------------------- 216
++MG ++RE V++ALRAA+NNP+RAVEYL +GIPE
Sbjct: 156 MEMG---FEREQVMKALRAAFNNPDRAVEYLMTGIPEGADTAAPPQGGGQGGGQGAGGSG 212
Query: 217 ---QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
++ P +S Q+Q QQ + T GP
Sbjct: 213 SGGGVSIDPEVLSS---------LQSQMQQHSESGGTGGP-------------------- 243
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQILQ 301
LDFLR+ QF LR ++QA PQ LQ
Sbjct: 244 ---LDFLRSDPQFAMLRGIIQARPQFLQ 268
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 152/321 (47%), Gaps = 62/321 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K + A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA A AG L+FLR+ QFQ +R ++
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 294 ------QANPQILQQWALIVP 308
Q NPQ+LQ AL P
Sbjct: 258 LLQQLGQENPQLLQLKALGFP 278
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 149/300 (49%), Gaps = 34/300 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSCQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K S++ S P Q + S + T + P+ A
Sbjct: 61 DYKIDEKNFVVVMVSKAKPSTAATPPASEPPKPPLQDSGSTSTAAPAATVPATASTPSSA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + P P+ A PA S S A+S LV G+ EA + +I+
Sbjct: 121 PTATPAAAPVPSEEAKEEPSAAITEPQQPASSSDGSQGLD-ASSALVTGAEYEAMLTEII 179
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP RAVEYL +GIP S+ Q NPP Q
Sbjct: 180 SMG---YERERVVAALRASFNNPHRAVEYLLTGIP-----------SSPVQESNPPVQA- 224
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AP PT P + P G L FLRN QF +R +Q NP +L
Sbjct: 225 ----PAPLPTESPASPP--------------EGENPLAFLRNQPQFLHMRQAIQQNPNLL 266
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 145/294 (49%), Gaps = 48/294 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
QPA + AG L+FLR+ QFQ +R ++Q N
Sbjct: 221 QPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 151/301 (50%), Gaps = 47/301 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
A PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TKQKKAAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 237
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 238 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 276
Query: 300 L 300
L
Sbjct: 277 L 277
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 157/325 (48%), Gaps = 48/325 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDGEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK--VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP- 117
E K+ E +FVVVM+TK K SS + ++ PA+ A ++PP + P P P
Sbjct: 61 EYKIDEKNFVVVMVTKPKGAACSSTPTPAASQPASAAAPAPASPPLTYTPIARQNAPIPL 120
Query: 118 ---------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV-SSV 155
T AP + PE +P +P+ P SS
Sbjct: 121 PVPFSIPAVPAPAAPTSEPSTTTAPKEEKPEE----KTDSPQETVSPSSTECSLPTDSSR 176
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 177 PSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 233
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
+ GQA P QT + P P P + A + G
Sbjct: 234 ----------SDREGQAVAEPPQTLSSTPTQPLPAAAGAAA------TTTTPSTPSTGGN 277
Query: 276 TLDFLRNSQQFQALRTMVQANPQIL 300
LDFL+N QFQ +R ++Q NP +L
Sbjct: 278 PLDFLQNQPQFQQMRQIIQQNPSLL 302
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 151/317 (47%), Gaps = 62/317 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K + A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA A AG L+FLR+ QFQ +R ++
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 294 ------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 258 LLQQLGQENPQLLQQIS 274
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 153/319 (47%), Gaps = 65/319 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++PE+ V +K+ IE +G D +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPEETVRVLKEKIEAEKGKDSFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K + SGA AP T++S P S+ T T A + P
Sbjct: 65 KIDEKNFVVVMVTKNK-AGSGA----PAPLPSEATSTSEPAPSSGQTQLPTTAAASPPPA 119
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
E PP +P + + P+ D AAS LV GS E + +I+ M
Sbjct: 120 APSGEEKPPEEPVTVSPQESIVSSIPPSGSMGRED---DAASTLVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GI
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGI---------------------------- 205
Query: 243 QPAAPAPTSGP--NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV------- 293
P +P P GP + P + Q +P G L+FLR+ QFQ +R ++
Sbjct: 206 -PGSPEPERGPIQESQPQE---QPVPE-----GENPLEFLRDQPQFQNMRQVIQQNPALL 256
Query: 294 --------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 257 PALLQQLGQENPQLLQQIS 275
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 157/318 (49%), Gaps = 64/318 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-P 121
++ E +FVVVM+TK+K +S G S A +S+A P S+ TT+ PA ++ P
Sbjct: 82 RIDEKNFVVVMVTKAK-NSPGTSVPPEA-------SSTAAPESS--TTSPSAPASGMSHP 131
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILD 181
P ++ E P P +P P+ SS + AAS LV GS E + +I+
Sbjct: 132 PPTIREDKSPSEESVPTTSPESVSGSVPSSGSSGRE--EDAASTLVTGSEYETMLTEIMS 189
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 190 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 236
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-------- 293
+QPA A AG L+FLR+ QFQ +R ++
Sbjct: 237 EQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 273
Query: 294 -------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 274 ALLQQLGQENPQLLQQIS 291
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 155/313 (49%), Gaps = 52/313 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSS-----SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
E K+ E +FVVVM+ K KV+ SGA+T + + ++A S P
Sbjct: 61 EYKIDEKNFVVVMVAKPKVAPAAAQPSGATTTTTSSTTVPTVPAAALSGSDNP------- 113
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P PE P P+ APA P + +++V +++ +A S LV G + E
Sbjct: 114 -----PEGGKPEDKPAEERPSNTSAPASTPTSSSGLLANV-NMFEEATSALVTGQSYENM 167
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARASAGGQ 231
V +++ MG ++RE V+ +LRA++NNP+RAVEYL +GIP + PV GG
Sbjct: 168 VTEMMLMG---YEREQVVASLRASFNNPDRAVEYLLTGIPAGEEGHASADPVVPPVGGG- 223
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----LDFLRNSQQFQ 287
PA +G P + GS A A T L FL N QF
Sbjct: 224 --------------TPALNTGSMTTP--------ASTGSLASAATGANPLGFLVNQPQFL 261
Query: 288 ALRTMVQANPQIL 300
+R ++Q NP +L
Sbjct: 262 QMRQIIQQNPSLL 274
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 151/317 (47%), Gaps = 63/317 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSQPSPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA + G L+FLR+ QFQ +R ++
Sbjct: 221 QPA------------------------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 294 ------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 257 LLQQLGQENPQLLQQIS 273
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 155/303 (51%), Gaps = 51/303 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T + APT P P SA A+P PAPA
Sbjct: 62 PAPATTQQSAPASTTAVTSSTVTTVAQAPTPAPALAPTSTPSSVTPASA--TASPEPAPA 119
Query: 141 PA-----PAPAPAPAPVSSV-------------SDVYGQAASNLVAGSNLEATVQQILDM 182
A PA PA PV+S S+++ A S LV G + E V +I+ M
Sbjct: 120 SATKQEKPAEKPAETPVASSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 179
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPA 237
G ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 G---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRENQAVVDPPQAASTGAPQSSAVAA 236
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+SG G P L+FLRN QFQ +R ++Q NP
Sbjct: 237 AAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNP 275
Query: 298 QIL 300
+L
Sbjct: 276 SLL 278
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 155/325 (47%), Gaps = 79/325 (24%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K A ++AP A PT+ T+T+ PAP
Sbjct: 65 RIDEKNFVVVMVTKAK-----AGQGTSAPL-------EASPTAASETSTTFLPAPASGM- 111
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ P +P V S + AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP G+P
Sbjct: 167 LTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP-----------------GSP 206
Query: 236 -PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV- 293
P + Q+ S + P + AG L+FLR+ QFQ +R ++
Sbjct: 207 EPEHSSVQE-------SQVSEQP-----------ATEAGENPLEFLRDQPQFQNMRQVIQ 248
Query: 294 --------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 249 QNPALLPALLQQLGQENPQLLQQIS 273
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 155/317 (48%), Gaps = 34/317 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ + V +K+ IE +G D +P + Q LI+ GK+L D T L
Sbjct: 1 MQITLKTLQQQTFKIDIDCGETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALN 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-- 118
E K+ E +FVVVM+TK K +++ + T + + T +S P + + PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPSPTTAQQSNDTTTTVTSTTPAAVPKLVPTPVPAQVSV 120
Query: 119 ------VAPPQSVPESAPPPAAPAPAPAPAPAPA-PAPAPVS--------SVSDVYGQAA 163
+ ESAP A PA P PA +P S S S+++ A
Sbjct: 121 SAPTASTPAAAAACESAPVSATVEEKPADKPVETPPATSPTSTESSIGDISRSNLFEDAT 180
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD------ 231
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
R S G +PP Q + A S A S+ G L+FLRN
Sbjct: 232 -RESQG--MADPP-----QAASTAASPSSAVAAAAAATTTTTTTTTSSTGGHPLEFLRNQ 283
Query: 284 QQFQALRTMVQANPQIL 300
QFQ +R ++Q NP +L
Sbjct: 284 PQFQQMRQIIQQNPSLL 300
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 153/320 (47%), Gaps = 69/320 (21%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-- 120
++ E +FVVVM+TK+K +S G S S A PT+T ++TS AP
Sbjct: 65 RIDEKNFVVVMVTKAK-TSPGTS-----------VPSEASPTATPESSTSFPSAPASGMS 112
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP + E P AP +P P+ S + AAS LV GS E + +I
Sbjct: 113 HPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGRE--EDAASTLVTGSEYETMLTEI 170
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 171 MSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQ 217
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV------ 293
++QP+ + AG L+FLR+ QFQ +R ++
Sbjct: 218 VSEQPS------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPAL 253
Query: 294 ---------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 254 LPALLQQLGQENPQLLQQIS 273
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 153/304 (50%), Gaps = 50/304 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 94 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAT 153
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQ--TPAPTVAPPQSVPESAPPPAAPAPAPA 140
ST S A Q+ ++ +S+ + +Q TP+P +AP + P PAA A P
Sbjct: 154 --STPSPATTQQSNPATTTTVSSSSAASVAQAPTPSPALAPTPTPTSVTPTPAAAACEPI 211
Query: 141 PA-------PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA P APV SS S+++ A S LV G + E V +I+
Sbjct: 212 PTSTPKEEKPAEKPVEAPVGISPTSSDSTLGDSSRSNLFEDATSALVTGQSYENMVTEIM 271
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPP 236
MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 272 SMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAAQSSAV 328
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
A A A T+ +P L+FLRN QFQ +R ++Q N
Sbjct: 329 AAAAATTTATTTTTTTSGGHP-------------------LEFLRNQPQFQQMRQIIQQN 369
Query: 297 PQIL 300
P +L
Sbjct: 370 PSLL 373
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 160/320 (50%), Gaps = 59/320 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K +++ + +VS AP Q + S T+T+
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAAAASPSVSEAPKPPVQDSGS--------TSTAAPTTNPTP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG-QAASNLVAGSNLEATVQQI 179
P P + P P+ A + A A P P SS G A+S LV G+ EA + +I
Sbjct: 113 APAPAPAAVPIPSGEAKEESSAVATEPQ-QPASSSGGSQGLDASSTLVTGAEYEAMLTEI 171
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG ++RE V+ ALRA++NNP RAVEYL +GIP PV Q NPPAQ
Sbjct: 172 MSMG---YERERVVAALRASFNNPHRAVEYLLTGIPS----SPV-------QESNPPAQ- 216
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ----- 294
APTSG P +P G L FLR QF +R +Q
Sbjct: 217 --------APTSGTTEAP------SVPE-----GENPLAFLRTQPQFLHMRQAIQQNPAL 257
Query: 295 ----------ANPQILQQWA 304
NPQ+LQQ +
Sbjct: 258 LPALLQQLGRENPQLLQQIS 277
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 150/317 (47%), Gaps = 63/317 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA + G L+FLR+ QFQ +R ++
Sbjct: 221 QPA------------------------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 294 ------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 257 LLQQLGQENPQLLQQIS 273
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 155/318 (48%), Gaps = 64/318 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +SSG S A + A +S++ P + + S TP PTV
Sbjct: 65 RIDEKNFVVVMVTKAK-NSSGTSVPPEASSTAAPESSTSFPLAP-ASGMSHTP-PTVRED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P A+P P+ + AAS LV GS E + +I+ M
Sbjct: 122 RSPSEESVPTASPESVSGSVPSSGSSGRE--------EDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-------- 293
Q+ TS P AG L+FLR+ QFQ +R ++
Sbjct: 214 QESQVSEQTS---TEP--------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 256
Query: 294 -------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 257 ALLQQLGQENPQLLQQIS 274
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 153/311 (49%), Gaps = 64/311 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV ++ FVVVM + SK + G+++ AP N P +PTT + P V
Sbjct: 60 DYKVTDSGFVVVM-SVSKPAKEGSAS---APGN--------PAGEGRPTTDKKIPDVDVT 107
Query: 121 P-PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P S P++ P+ P + G S+LV G N E VQ++
Sbjct: 108 ESPSSKPDANSQPSLPTVTTTQSTTTN-----------TLGFGESSLVTGENFERVVQEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG +++ VIRA+RA +NNP+RA EYL SG IP V + P+Q
Sbjct: 157 VSMG---FEKPLVIRAMRAGFNNPDRAFEYLSSGNIPNIDIV-------------DQPSQ 200
Query: 239 TQAQQ---PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD---FLRNSQQFQALRTM 292
+ + P AP P GS + AG+ D L + QFQ +R +
Sbjct: 201 REGSESVSPEAPGDADTP---------------GSES-AGSEDPIAALASLPQFQQMRAL 244
Query: 293 VQANPQILQQW 303
VQANP++L Q
Sbjct: 245 VQANPELLPQL 255
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 140/318 (44%), Gaps = 65/318 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D T + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGQDAFPVAGQKLIYAGKILNDDTPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K + APA++ ++ A P T P
Sbjct: 65 KIDEKNFVVVMVTKTKSGLGTSVPPETAPASEPSVSAPAASIVAMPLT-----------P 113
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S E P A P P P P S AAS LV GS E + +I+ M
Sbjct: 114 SSPKEER--PTADNPTSLPPPETVTGSVPSSGSIGREDDAASTLVTGSEYETMLTEIMSM 171
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G +++E V+ ALRA++NNP RAVEYL GI
Sbjct: 172 G---YEQEQVVAALRASFNNPHRAVEYLLMGI---------------------------- 200
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
P +P P GP Q G L+FLR+ QFQ +R ++
Sbjct: 201 -PGSPEPEGGPIQE-----SQSNEQAAVEGGENPLEFLRDQPQFQNMRQVIQQNPALLPA 254
Query: 294 ------QANPQILQQWAL 305
Q NP +LQQ +L
Sbjct: 255 LLQQLGQENPHLLQQISL 272
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 137/300 (45%), Gaps = 63/300 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAEHQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + A+ + T + +TTS P P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTA---------AEEDHTNTETKEESSTTSSVPEPSSN 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV ++ P + A + A A GQA S L+ G N V I+
Sbjct: 109 P--SVQGASNPVSTAQEQSAASTATECAG----------GQAESALLMGENYNTMVNNIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLVTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQF------------------------QDHGQHPLAFLRMQPQFQQMREVIQQNPQLL 237
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 141/301 (46%), Gaps = 59/301 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV E+ FVVVM VS T A A + S P T+PTT ++P
Sbjct: 60 DYKVTESGFVVVM----SVSKPSKDTTKEASA----SVQSNPTGETKPTTDKKSPV---- 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A AP+ AP SS + G S+LV G N E V++++
Sbjct: 108 ----------TEANEAPSITTAP---------SSATSTLGFGESSLVTGENFERVVKELM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R VI+A+RA +NNP+RA EYL SG IP V ++
Sbjct: 149 SMG---FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREES 195
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
++ P P T P G ++GS L L QFQ +R +VQANP++
Sbjct: 196 ESVSPEGPGDTDTP----------GSESLGSEDPIAALASL---PQFQQMRALVQANPEL 242
Query: 300 L 300
L
Sbjct: 243 L 243
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 162/308 (52%), Gaps = 41/308 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S+ A S++ ++ + TT+SA +
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSA------------- 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS----DVYGQAASNLVAGSNLEATV 176
V ES P+ PAPA PVSS S +++ +A S L G + E V
Sbjct: 108 --APVSESPSEEEKKPSEEKPSSDPAPATTPVSSGSLPNANIFEEATSAL--GQSYENMV 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP + V A +G+ P
Sbjct: 164 TEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTP 220
Query: 237 AQTQAQQPAAPAPTSGPN----ANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
A A PA S P+ A P S +GA L+FLRN QF +R +
Sbjct: 221 ASAPA--PAISTGLSSPSSTAPAQP-----------SSASGANPLEFLRNQPQFLQMRQI 267
Query: 293 VQANPQIL 300
+Q NP +L
Sbjct: 268 IQQNPSLL 275
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 150/300 (50%), Gaps = 46/300 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQ-PTT----------TSQTPAPTVAPPQSVPESA 129
A+T + PA +S+ P Q PT+ S TPA T A + P SA
Sbjct: 62 PAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPTPTPASITPASTTASSEPAPASA 121
Query: 130 PPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA P + S+ S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGGQAGNPPA-QTQ 240
++RE VI ALRA++NNP+RAVEYL GIP E AV PPA T
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV-----------VDTPPAVSTG 227
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A Q + A + A+ P G P L+FLRN QFQ +R ++Q NP +L
Sbjct: 228 APQSSVAAAAATTTASTTTASPGGHP----------LEFLRNQPQFQQMRQIIQQNPSLL 277
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 153/321 (47%), Gaps = 59/321 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P + P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFP---SAPASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E +AP +P P+ DV AA + V GS E + +I+ M
Sbjct: 122 KSPSEE----SAPTTSPESVSGSVPSSGSSGREEDV-AFAAPSTVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 223
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QP+ A AG L+FLR+ QFQ +R ++
Sbjct: 224 QPSTEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 260
Query: 294 ------QANPQILQQWALIVP 308
Q NPQ+LQ AL P
Sbjct: 261 LLQQLGQENPQLLQLKALGFP 281
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 155/324 (47%), Gaps = 44/324 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVGGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++ A + + + TT+ + T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPAPSPTTTQQSNDTTTTVSSSTIAAAAPKPAPVTAPAP 120
Query: 121 PPQSVPESAPP-PAAPAPAPAPAPAPAP---APAPVS----------------SVSDVYG 160
S P + PP PAA PAP +P A P+ S S+++
Sbjct: 121 ALVSTPVADPPTPAAVTCEPAPVSSPVEEKVAEKPIETPAATSTSTDSTTGDLSRSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----E 216
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 237
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
Q P AS G A A T+ S+ G
Sbjct: 238 QGMTDPPQAASTGASPSAVAAAAAAAVTTTTTTTT-----------------TSSTGGHP 280
Query: 277 LDFLRNSQQFQALRTMVQANPQIL 300
L+FLRN QFQ +R ++Q NP +L
Sbjct: 281 LEFLRNQPQFQQMRQIIQQNPSLL 304
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 142/296 (47%), Gaps = 48/296 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 1 VKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK-AAA 59
Query: 83 GASTVS----------------AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVP 126
GA+ S AP A P P + AP AP
Sbjct: 60 GATQQSDATSAVSSTTAAAVTVTAPVPTAAPVPDPVPPPPAPDEVACESAPVTAP----E 115
Query: 127 ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGS 186
E P P P A +P+ + +S S+++ A S LV G + E V +I+ MG
Sbjct: 116 EEKPAEKTPEPPAAISPSSTESTTGDTSRSNLFEDAISALVTGQSYENMVTEIISMG--- 172
Query: 187 WDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQTQAQQP 244
++RE VI ALRA++NNP+RAVEYL GIP Q P AS G +Q+
Sbjct: 173 YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAEPSQAASTGA--------SQSSTV 224
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A T +P S+ G L+FLRN QFQ +R ++Q NP +L
Sbjct: 225 ATSVAT--------------IPMTTSSLGGHPLEFLRNQPQFQQMRQIIQQNPSLL 266
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/323 (31%), Positives = 151/323 (46%), Gaps = 74/323 (22%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++ ++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMELDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S S P A PT+ ++TS +PAP
Sbjct: 65 RIDEKNFVVVMVTKAKTSPG----TSVPP--------EASPTAAPESSTSFSPAPASGMS 112
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
S PP A +P+ P +P VS G AAS LV GS E +
Sbjct: 113 HS-----PPTAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--- 293
++QPA A AG L+FLR+ QFQ +R ++
Sbjct: 215 ESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQN 251
Query: 294 ------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 252 PALLPALLQQLGQENPQLLQQIS 274
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 142/307 (46%), Gaps = 57/307 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQL-------------FE 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+PP + Q A PA +AG L FLR QFQ +R ++
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQVI 250
Query: 294 QANPQIL 300
Q NPQ+L
Sbjct: 251 QQNPQLL 257
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 142/307 (46%), Gaps = 57/307 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQL-------------FE 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+PP + Q A PA +AG L FLR QFQ +R ++
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQVI 250
Query: 294 QANPQIL 300
Q NPQ+L
Sbjct: 251 QQNPQLL 257
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 142/307 (46%), Gaps = 57/307 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQL-------------FE 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+PP + Q A PA +AG L FLR QFQ +R ++
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQVI 250
Query: 294 QANPQIL 300
Q NPQ+L
Sbjct: 251 QQNPQLL 257
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 148/312 (47%), Gaps = 72/312 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P + V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 VTLKTLQQQTFKIRMEPGETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K A PA +S PP + P + A T+ P
Sbjct: 65 KIDEKNFVVVMVTKAK----------AGPA------TSVPPEPSAPAS-----ANTLEPS 103
Query: 123 QSVPESAPPPAAPAPAPAP--------------APAPAPAPAPVSSVSDVYGQAASNLVA 168
P + A P P PAP P P P S S AAS LV
Sbjct: 104 TPTPPAPTIVAMPLPPPAPNEEKKATEESAAGTLPEARPGSLPSSGSSGQEDDAASTLVT 163
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL GIP S
Sbjct: 164 GSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLMGIP----------GSP 210
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
++G P Q ++Q P PAP G N L+FLR+ QFQ
Sbjct: 211 EPESG--PVQ-ESQAPEQPAPEGGENP---------------------LEFLRDQPQFQN 246
Query: 289 LRTMVQANPQIL 300
+R ++Q NP +L
Sbjct: 247 MRQVIQQNPSLL 258
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 151/332 (45%), Gaps = 92/332 (27%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G ST+ APP + PT AP
Sbjct: 65 RIDEKNFVVVMVTKAK---AGQSTL-------------APPEVS----------PTAAPE 98
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG------------QAASNLV 167
S P P + P PA +P+ A +S V G AAS LV
Sbjct: 99 PSTPFQLSPASGMSHPPPATREDKSPSQESATTTSPESVLGSVPSSGSSGREEDAASTLV 158
Query: 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 227
GS E + +I+ MG ++RE VI ALRA+YNNP RAVEYL +GIP
Sbjct: 159 TGSEYETMLMEIMSMG---YERERVIAALRASYNNPHRAVEYLLTGIP------------ 203
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
GNP + + Q + + A AG L+FLR+ QFQ
Sbjct: 204 -----GNPEPEHGSIQESQVSEQPATEA----------------AGENPLEFLRDQPQFQ 242
Query: 288 ALRTMV---------------QANPQILQQWA 304
+R ++ Q NPQ+LQQ +
Sbjct: 243 NMRQVIQQNPALLPALLQQLGQENPQLLQQIS 274
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 150/303 (49%), Gaps = 55/303 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ E V +K+ IE +G D +P + Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM++K+K S G S + P+ +SS+ +S P +
Sbjct: 61 EYKIDEKNFVVVMVSKTK--SPGTSAAPSEPSRSMAASSSSSSSSPPPPPPPAPAPAAIP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---AASNLVAGSNLEATVQ 177
P PPA +PA +P +DV G+ A+S LV G +A +
Sbjct: 119 FTDECPRD-DPPATVSPASSPDGG-----------TDVVGEGEDASSTLVTGQEYDAMLT 166
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
I+ MG ++R+ V+ AL+A+YNNP RAVEYL +GIP VP Q NP
Sbjct: 167 NIMSMG---YERDKVVAALKASYNNPHRAVEYLLNGIP---TVPV--------QETNPAP 212
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
AQ P PT G N L+FLR+ QFQ++R ++Q NP
Sbjct: 213 ---AQLPTDTQPTEGENP---------------------LEFLRSQPQFQSMRQVIQQNP 248
Query: 298 QIL 300
+L
Sbjct: 249 SLL 251
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 152/317 (47%), Gaps = 60/317 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P + P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFP---SAPASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E +AP +P P+ DV AA + V GS E + +I+ M
Sbjct: 122 KSPSEE----SAPTTSPESVSGSVPSSGSSGREEDV-AFAAPSTVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 223
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QP+ + AG L+FLR+ QFQ +R ++
Sbjct: 224 QPS------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPA 259
Query: 294 ------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 260 LLQQLGQENPQLLQQIS 276
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 141/308 (45%), Gaps = 82/308 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSS---SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
E + E F+VVM+TK K + + + + N+ ++TSSA +TQP++ P
Sbjct: 58 EYNIDEKKFIVVMVTKPKAGATPKTSEEQRAESTDNKEESTSSA---TTQPSSN-----P 109
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
TV Q ++A + P PA GQA S L+ G + V
Sbjct: 110 TV---QETLQAASNVQEQSAVPTPAA----------------GQAESALLMGEDYNTMVN 150
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-----AVPPVARASAGGQA 232
I+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP A+ Q+
Sbjct: 151 NIMDMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQS 207
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
+P L FLR QFQ +R +
Sbjct: 208 QDP-----------------------------------------LAFLRMQPQFQQMRQV 226
Query: 293 VQANPQIL 300
+Q NPQ+L
Sbjct: 227 IQQNPQLL 234
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 153/306 (50%), Gaps = 57/306 (18%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q + TP P +AP S P S P +A A +
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQ----APTPVPALAPT-STPASITPASATASSEP 116
Query: 141 --------PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQI 179
PA PA PV SS S+++ A S LV G + E V +I
Sbjct: 117 ASASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEI 176
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGN 234
+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+
Sbjct: 177 MSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSA 233
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
A +SG G P L+FLRN QFQ +R ++Q
Sbjct: 234 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQ 272
Query: 295 ANPQIL 300
NP +L
Sbjct: 273 QNPSLL 278
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 145/343 (42%), Gaps = 119/343 (34%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K T APP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-----------------------------------TPAPP 89
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG---------------------- 160
++ P +AP P+ P P PAPA + P S+ D
Sbjct: 90 EASPTAAPEPSTPFP---PAPASGMSHPPPSNREDKSSSEESATTTSPESISGSVPSSGS 146
Query: 161 -----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 147 SGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 203
Query: 216 EQTAVPPVARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 274
G+P P Q+ AP + AG
Sbjct: 204 -----------------GSPEPEHGSVQESQAPE------------------QPATEAGE 228
Query: 275 GTLDFLRNSQQFQALRTMV---------------QANPQILQQ 302
L+FLR+ QFQ +R ++ Q NPQ+LQQ
Sbjct: 229 NPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQ 271
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 86/129 (66%), Gaps = 26/129 (20%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE V A A
Sbjct: 1 MGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEV----------------AVPAA 44
Query: 242 QQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
Q P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+ QFQALRTM
Sbjct: 45 QYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNPQFQALRTM 103
Query: 293 VQANPQILQ 301
VQ+NPQILQ
Sbjct: 104 VQSNPQILQ 112
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 151/327 (46%), Gaps = 82/327 (25%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-- 120
++ E +FVVVM+TK+K A P A +S PT+ ++TS PAP
Sbjct: 65 RIDEKNFVVVMVTKAK----------AGPGTSAPPETS--PTAAPESSTSFPPAPASGMS 112
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP + E P P +P P+ SS + AAS LV GS E + +I
Sbjct: 113 HPPPTAKEDKSPSEESVPTMSPESVSGSVPSSGSSGRE--EDAASTLVTGSEYETMLTEI 170
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQ 238
+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 171 MSMG---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEH 210
Query: 239 TQAQ------QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
+ Q QPA A G L+FLR+ QFQ +R +
Sbjct: 211 SSVQESQVSEQPATEA-----------------------VGDNPLEFLRDQPQFQNMRQV 247
Query: 293 V---------------QANPQILQQWA 304
+ Q NPQ+LQQ +
Sbjct: 248 IQQNPALLPALLQQLGQENPQLLQQIS 274
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 123/220 (55%), Gaps = 28/220 (12%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEAT 175
S PPPAA P+ AP +P V S + AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 148/317 (46%), Gaps = 62/317 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + G S AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-AGQGIS----APPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +A+
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQRAE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA A AG L+FLR+ QFQ +R ++
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 294 ------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 258 LLQQLGQENPQLLQQIS 274
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 146/310 (47%), Gaps = 37/310 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F++E+ P D V K+ IE +G + YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQSFKVEIDPSDTVKVFKEKIEVEKGKE-YPAQYQKLIYAGKILNDDSKMS 59
Query: 61 ENKVAENSFVVVMLTKSKVS--SSG---ASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
E + E FVV+M+TK K SSG AS V AAP + T + A S T + P
Sbjct: 60 EYDIEEKKFVVIMVTKPKCGTPSSGEGAASPVVAAPVDVPGTPAPAGAASGNAGAT-KGP 118
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
+S + PP A A AP + S A S LV G + +
Sbjct: 119 EAAGETTRSPTTAQPPSVPAQQTTPAPAAAAAAPTATTESSGGIALAESALVMGEDYQRM 178
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY-----SGIPEQTAVPPVARASAGG 230
V QI++MG +D+ V RALRA++NNP+RAVEYL G E PP A S G
Sbjct: 179 VSQIMEMG---YDKPQVERALRASFNNPDRAVEYLLTGGNEGGNTEGGGAPPAAAQSPGR 235
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
+A PP A P T G +GS L FLR QFQ +R
Sbjct: 236 EAAAPPG-------ALPLSTEG---------------LGSGGAEDPLAFLRFQPQFQQMR 273
Query: 291 TMVQANPQIL 300
++Q NPQ+L
Sbjct: 274 QVIQQNPQLL 283
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 136/305 (44%), Gaps = 75/305 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G PA QQ LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKQKIETQKG---LPAEQQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K S++ ++ ++ +T ST + +P PTV
Sbjct: 58 EYNIDEKKFIVVMVTKPKTSATPKTS------DEQRTEGDNKEESTSSSVAQPSPNPTV- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q +A A PA GQA S L+ G + V+ I+
Sbjct: 111 --QDTSRAASTVQEQIAAAVPAAG--------------CGQAESALLMGEDYNTMVKNIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-----AVPPVARASAGGQAGNP 235
DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP A+ Q+ +P
Sbjct: 155 DMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQSQDP 211
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
L FLR QFQ +R ++Q
Sbjct: 212 -----------------------------------------LAFLRMQPQFQQMRQVIQQ 230
Query: 296 NPQIL 300
NPQ+L
Sbjct: 231 NPQLL 235
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 166/333 (49%), Gaps = 57/333 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAS----TVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E +FVVVM+TK K ++S + VS P +Q TT APP ++ T+ PA
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQP-TTPVAPPNASIVPETTPDPA 120
Query: 117 PTVAPPQSV-----PESAPP-----------PAAPAPAPA--------PAPAPAPAPAPV 152
P V P SV P +APP P + PAPA A A + A +
Sbjct: 121 P-VEPAASVEPIDPPVTAPPAASEDTVETTEPVSATPAPAVEEEIQGQEEQAIAQSEASL 179
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+ + AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL +
Sbjct: 180 TDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLT 236
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN-----ANPLDLFPQGLPN 267
GIP ++ PP Q+ P P S P G +
Sbjct: 237 GIPAESEQPP-------------------QEVVRPTPVSNPTPPAPQRAQPPPAAAGAES 277
Query: 268 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
G+ A A L+FLR+ QFQ +R ++Q NP +L
Sbjct: 278 GGAQASANPLEFLRHQPQFQQMRQIIQQNPSLL 310
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 145/300 (48%), Gaps = 46/300 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 83 GA-------------STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESA 129
A + S+ AQ + AP + PT S TPA T A + P SA
Sbjct: 62 PAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPAPTPASITPASTTASSEPAPASA 121
Query: 130 PPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA AP + S+ S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQTQ 240
++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G + A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSSVAAAAA 238
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+SG G P L+FLRN QFQ +R ++Q NP +L
Sbjct: 239 TTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSLL 277
>gi|218190702|gb|EEC73129.1| hypothetical protein OsI_07141 [Oryza sativa Indica Group]
Length = 242
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 74/97 (76%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YGQAASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 158 ADIYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 217
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
EQ A ASA QA + PA QA PTSG
Sbjct: 218 EQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 154/314 (49%), Gaps = 36/314 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE++ +KV +K+ I +G D Y A Q LI+ GK+L D +
Sbjct: 1 MIITLKTLQQQTFKIEIEESEKVLALKERIAQEKGGD-YAADNQKLIYAGKILDDKQCIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E++FVV+M+TK+K + + A PA Q + A + + + TP T
Sbjct: 60 EYKIQESNFVVIMVTKAKPKAPEKAP-EAKPAEQPTPSQPAATPAAASSEPAATPTET-- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPA---PAPAPAPVSSVSDVYGQ--------AASNLVAG 169
P + P +PAPA A + +PA V+ + A S LV G
Sbjct: 117 -----PAAVDQPMSPAPAAATTESMETSSPATEVVTEATPADAPPAAVQPESAESTLVTG 171
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
+ E TVQ+++ MG + R+ V+RALRA++NNP+RAVEYL SGIP++ A
Sbjct: 172 ESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPDEPVPEAPVAAPPA 228
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
P A Q AP + S AG L FLR++ QF+ +
Sbjct: 229 AGQQPPAAGGQPPAAPPAAPATPGTP-------------ASTAGEDPLHFLRSTPQFETM 275
Query: 290 RTMVQANPQILQQW 303
R +VQ+NP +L +
Sbjct: 276 RRLVQSNPGLLSNF 289
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 154/309 (49%), Gaps = 27/309 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F++E++P V D+K +E V+G D +PA+ Q LI+ G++L D +
Sbjct: 1 MLITLKTLQQQTFKVEIEPTKTVKDLKAKVEEVRGKDGFPAAGQKLIYAGRILADDKLIS 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ ++E +FVVVM+TK K + STV + PA +AP +QP +
Sbjct: 61 DYNMSEENFVVVMVTKPKAAPKTESTVESKPA-------TAP---SQPAEKPKEEKKEET 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + + P +A A A A ++S A S L+ G+ E V +++
Sbjct: 111 KEEKIDDKPPTESASASTETAAGTTTTASTSLASTLS---AAESTLLTGAAYENVVAELM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V+RALRAA+NNP+RAV+YL SGIPE + + + PA +
Sbjct: 168 NMG---YERDPVVRALRAAFNNPDRAVDYLLSGIPE-SVLAEAEAPAPAAAEQPEPAAAR 223
Query: 241 AQQPAAPAPTSGPNANPLDLFPQ---------GLPNMGSNAGAGTLDFLRNSQQFQALRT 291
+ PA PA T G P G +G + L FLR QFQ +R
Sbjct: 224 TESPATPA-TGGSTTTIAATTPATTPATTAASGTSPLGGQSEEDPLAFLREQPQFQQMRQ 282
Query: 292 MVQANPQIL 300
++Q NP +L
Sbjct: 283 IIQQNPSLL 291
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 137/300 (45%), Gaps = 68/300 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I++ V +K+ IE +G D YPA Q LI+ GK+L D T L
Sbjct: 1 MIITLKNLQQQTFTIDIDVNVTVKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E F+VVM+TK K+ PA A ++ S P T QT T
Sbjct: 60 EYKIDEKKFIVVMVTKPKL----------PPATHAGSSDSTPTPGTGDGGEKQTSDTTSN 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA V+S + +GQA S L+ G +++ I+
Sbjct: 110 EP------------------------PASENVNSGAS-FGQAESALLMGDEYNQSLRNIM 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG + +E V RALRA++NNP+RAVEYL +GIP + V + GG+
Sbjct: 145 DMG---YPKEQVERALRASFNNPDRAVEYLLNGIP--SDVDDTESSDVGGEE-------N 192
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
P P T G +P L FLR+ QFQ +R ++QANPQ+L
Sbjct: 193 TLNPLTP-DTCGNEEDP-------------------LAFLRSQPQFQQMRQVIQANPQLL 232
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 151/323 (46%), Gaps = 74/323 (22%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P PA ++ P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFP----------LAPASGMSHP 114
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
P PA +P+ P +P VS G AAS LV GS E +
Sbjct: 115 -------PSPAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEITSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--- 293
++QP PT NP L+FLR+ QFQ +R ++
Sbjct: 215 ESQVSEQP----PTEAAGENP-------------------LEFLRDQPQFQNMRQVIQQN 251
Query: 294 ------------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 252 PALLPALLQQLGQENPQLLQQIS 274
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 146/344 (42%), Gaps = 116/344 (33%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K T APP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-----------------------------------TPAPP 89
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG---------------------- 160
++ P +AP P+ P P PAPA + P S+ D
Sbjct: 90 EASPTAAPEPSTPFP---PAPASGMSHPPPSNREDKSSSEESATTTSPESISGSVPSSGS 146
Query: 161 -----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 147 SGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 203
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
S + G+ +QPA A AG
Sbjct: 204 ----------GSPEPEHGSVQESQAPEQPATEA-----------------------AGEN 230
Query: 276 TLDFLRNSQQFQALRTMV---------------QANPQILQQWA 304
L+FLR+ QFQ +R ++ Q NPQ+LQQ +
Sbjct: 231 PLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQIS 274
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 133/300 (44%), Gaps = 63/300 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 133/300 (44%), Gaps = 63/300 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 133/300 (44%), Gaps = 63/300 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 133/300 (44%), Gaps = 63/300 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 146/318 (45%), Gaps = 65/318 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 82 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 133
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 134 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 190
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 191 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 230
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-------- 293
Q+ AP + + AG L+FLR+ QFQ +R ++
Sbjct: 231 QESQAPEQPA------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 272
Query: 294 -------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 273 ALLQQLGQENPQLLQQIS 290
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 146/318 (45%), Gaps = 65/318 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV-------- 293
Q+ AP + + AG L+FLR+ QFQ +R ++
Sbjct: 214 QESQAPEQPA------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 255
Query: 294 -------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 256 ALLQQLGQENPQLLQQIS 273
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 145/317 (45%), Gaps = 62/317 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K A AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA A AG L+FLR+ QFQ +R ++
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 294 ------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 258 LLQQLGQENPQLLQQIS 274
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 156/325 (48%), Gaps = 57/325 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ KTL+G F++E +D V++VK+ + VQG + S + LI GKVL + L
Sbjct: 1 MKLRFKTLQGKEFDLETSLDDTVAEVKRKVAAVQGFEQDALSCR-LIFSGKVLSNENEKL 59
Query: 60 EENKVAENSFVVVM-LTKSKVSSSG-ASTVSAAPANQAQTTSSAPPTSTQ-PTTTSQTPA 116
++ V E+SF+VVM K+ + G +S+ + A +A+TT TS S T A
Sbjct: 60 QDLNVKEDSFLVVMPPKKTYQKTMGQSSSKTDAQGKEAETTRQKETTSESVQEKQSSTTA 119
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
T+ A + P +S+ V GS E TV
Sbjct: 120 VTINNNDRDETKATSSSQPTSG-----------------------TSSDFVIGSQYETTV 156
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASAG 229
+ +++MG ++ + V RALRAA++NP+RAVEYL++GIPE QT++P G
Sbjct: 157 KNLMEMG---FEEQQVKRALRAAFHNPDRAVEYLFNGIPENLERELGQTSLPERTSPQVG 213
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPN----ANPLDLF-PQ--------GLPNMGSNAGAGT 276
TQ + + +S N + P ++F PQ G + GS G+
Sbjct: 214 ---HTDRTATQENRTGSSGVSSIGNQATDSQPFNMFEPQRSQTAQQGGTESTGS---TGS 267
Query: 277 LDFLRNSQQFQALRTMVQANPQILQ 301
LDFL QF +R ++QANP+ILQ
Sbjct: 268 LDFLTRIPQFNVMRRLIQANPRILQ 292
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 138/295 (46%), Gaps = 50/295 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K A AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
Q+ AP + AG L+FLR+ QFQ +R ++Q N
Sbjct: 214 QESQAPE------------------QPATEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 126/216 (58%), Gaps = 30/216 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+IE + D V+D+K+ I+ QG V Q LI+ GKVL D ++E
Sbjct: 1 MKITVKTLQQKVFQIEAEGTDTVADLKQKIQETQGHGV---DSQKLIYSGKVLPDSKSIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K +++ +A ++ S+APP + P S PAP
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAA-----TAGASSSTPAASTAPPAAAAPAAESSIPAPV-- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVS-SVSDVYGQAASNLVAGSNLEATVQQI 179
AP AAP P AP PA A APV+ S+ D + + G L+ TVQ +
Sbjct: 111 --------APSTAAPQPPNAPILTPAQA-APVAPSLGDGF-------LTGEALQGTVQNM 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++MG ++RE V+RALRA++NNPERAVEYL++GIP
Sbjct: 155 IEMG---FEREQVMRALRASFNNPERAVEYLFNGIP 187
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 116/214 (54%), Gaps = 28/214 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV ++ FVVVM + SK + G+++ AP N P +PTT + P V
Sbjct: 60 DYKVTDSGFVVVM-SVSKPAKEGSAS---APGN--------PAGEGRPTTDKKIPDVDVT 107
Query: 121 P-PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P S P++ P+ P + G S+LV G N E VQ++
Sbjct: 108 ESPSSKPDANSQPSLPTVTTTQSTTTN-----------TLGFGESSLVTGENFERVVQEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
+ MG +++ VIRA+RA +NNP+RA EYL SG
Sbjct: 157 VSMG---FEKPLVIRAMRAGFNNPDRAFEYLSSG 187
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 145/317 (45%), Gaps = 62/317 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA A AG L+FLR+ QFQ +R ++
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 294 ------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 258 LLQQLGQENPQLLQQIS 274
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 145/317 (45%), Gaps = 62/317 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA A AG L+FLR+ QFQ +R ++
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 294 ------QANPQILQQWA 304
Q NPQ+LQQ +
Sbjct: 258 LLQQLGQENPQLLQQIS 274
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 130/300 (43%), Gaps = 84/300 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D + A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK KVS S Q TS++ P + + +T A
Sbjct: 60 SYNIDEKKFIVIMVTKPKVSES-------------QPTSTSIPEAGESASTDSGDAK--- 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P++ PP P A P N + + LEAT+Q I+
Sbjct: 104 -----PKTVPPEEVVKPTTAETERVTETP---------------NTTSDAELEATIQSIM 143
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG +DR V +ALRA++NN ERAVEYL +GIPE+
Sbjct: 144 DMG---YDRPQVEQALRASFNNRERAVEYLITGIPEELL--------------------- 179
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+Q A + P L FLR+ QFQ +R ++Q NP +L
Sbjct: 180 HEQEAEESSDEDP-----------------------LAFLRDQPQFQQMRAVIQQNPNLL 216
>gi|356551713|ref|XP_003544218.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 254
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 19/140 (13%)
Query: 152 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
V+ ++ YG ASN V GSNLE T+QQI+DMGGGSWDR+TV ALRAA NNPE V+YLY
Sbjct: 62 VNVTTNTYGLTASNXVVGSNLEKTIQQIMDMGGGSWDRDTVSHALRAAXNNPEHVVDYLY 121
Query: 212 SGIPEQTAV------PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL 265
SGIPE + P+ + + G A A A N++PL++FP+ +
Sbjct: 122 SGIPEVVEIFMSIGPYPINQTTKIGGA------------TARAVFGVHNSSPLNMFPKEI 169
Query: 266 PNMGSNAGAGTLDFLRNSQQ 285
G AG G LDF RN+ Q
Sbjct: 170 I-CGVGAGIGLLDFHRNNLQ 188
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 395
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 154/302 (50%), Gaps = 31/302 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G + + + Q LI+ GK+L D T L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVKTLKERIEQEKGKESFSVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K ++ + SA+ + + SSA + + VA
Sbjct: 61 EYKIDEKNFVVVMVTKPKTAAPSPKSSSASSSAPSSAPSSAAAAAAPTPPSVADKPAEVA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E A P P P PA + + +D+ +A S LV GS+ + V +++
Sbjct: 121 PADKLEEKESSTAEPPPPPPPARSSESS-------TDLLSEAVSTLVTGSSYDTMVNEMM 173
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP-AQT 239
MG ++RE V+ ALRA+YNNP+RAVEYL SGIP Q + S G P +++
Sbjct: 174 LMG---YEREQVVAALRASYNNPDRAVEYLLSGIPGQD------QGSRTGPDSTPAVSES 224
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQFQALRTMVQANPQ 298
A A + ++P +AG G L FLRN QF +R ++Q N
Sbjct: 225 PAAPAGGTAAPTSTESSP-------------SAGGGNPLGFLRNQPQFHVMRQLIQQNAA 271
Query: 299 IL 300
+L
Sbjct: 272 LL 273
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 138/297 (46%), Gaps = 62/297 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 60
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
++ A+P ++++S PP PT+ P P +S E + AP +
Sbjct: 61 TSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAAREDKSPSEES--------APTTS 109
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 110 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 166
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA A
Sbjct: 167 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPATEA-------------- 202
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMV---------------QANPQILQQWA 304
AG L+FLR+ QFQ +R ++ Q NPQ+LQQ +
Sbjct: 203 ---------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQIS 250
>gi|217071960|gb|ACJ84340.1| unknown [Medicago truncatula]
Length = 110
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKV-SSSGASTVSAAP 91
+NKV+E+ F+VVML+KSKV S+G S+ A
Sbjct: 61 DNKVSEDGFLVVMLSKSKVLGSAGTSSTQACC 92
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 132/300 (44%), Gaps = 63/300 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +T + + SS QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P + A A V GQA L+ G + V I+
Sbjct: 112 ------QGASSPGNIIQEQSEASTTAGC---------VGGQAEXALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 77/302 (25%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K +
Sbjct: 148 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK---A 204
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA-----PAP 137
G T SA P A PT+ ++TS PAPT S PPPAA P+
Sbjct: 205 GQGT-SAPP--------EASPTAAPESSTSFLPAPTSG------MSHPPPAAREDKSPSE 249
Query: 138 APAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEATVQQILDMGGGSWDRETVIRA 195
AP +P V S + AAS LV GS E + +I+ MG ++RE V+ A
Sbjct: 250 ESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAA 306
Query: 196 LRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA 255
LRA+YNNP RAVEYL +GIP S + G+ ++QPA
Sbjct: 307 LRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA---------- 346
Query: 256 NPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV---------------QANPQIL 300
+ AG L+FLR+ QFQ +R ++ Q NPQ+L
Sbjct: 347 --------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL 392
Query: 301 QQ 302
QQ
Sbjct: 393 QQ 394
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 132/300 (44%), Gaps = 63/300 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IE +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIEIQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +T + + SS QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASSPGNIIQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AQ+ + G L FLR QFQ +R ++Q NPQ+L
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 169/331 (51%), Gaps = 53/331 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAS----TVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E +FVVVM+TK K ++S + VS P +Q TT APP ++ T+ PA
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQP-TTPVAPPNASIVPETTPDPA 120
Query: 117 PTVAPPQSV-----PESAPPPAAPAPAPAPAPAPAPAPAPV-----------------SS 154
P V P SV P +APP A+ P A PAPV +S
Sbjct: 121 P-VEPAASVEPIDPPITAPPAASEDTVETTEPVSA-TPAPVVEEEIQGQEEQAIAQSEAS 178
Query: 155 VSD---VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
++D + AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 179 LTDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLL 235
Query: 212 SGIPEQTAVPP--VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 269
+GIP ++ PP V R + P Q PAA SG G
Sbjct: 236 TGIPAESEQPPQEVVRPTPSSNPTPPAPQRAQPPPAAAGAESG----------------G 279
Query: 270 SNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ A A L+FLR+ QFQ +R ++Q NP +L
Sbjct: 280 AQASANPLEFLRHQPQFQQMRQIIQQNPSLL 310
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 149/304 (49%), Gaps = 34/304 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ ++E V +K+ IE+ G + YPASQQ LI+ G +L D T+E
Sbjct: 1 MWITIKNLQQQTIKLEFDESQTVQKLKEKIESELGKE-YPASQQKLIYAGCILDDDKTIE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVM+ K+ V+++ A A +T ++ T + T + + T A
Sbjct: 60 SYKVDEKKFIVVMVKKATVAAAAAPEKEEA----GKTITNESTTEKKKEDTPASKSTTTA 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + PA A A A A S ++ QA +NLV G N VQ I+
Sbjct: 116 SSTSSPSKSSSEQSQQPAAAQETASGGAAASQSQIA----QAEANLVMGENYNTMVQNIM 171
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA----VPPVARASAGGQAGNPP 236
+MG +DR++V+RAL A++NNPERAVEYL +GIPE P +GG GN
Sbjct: 172 EMG---YDRDSVVRALNASFNNPERAVEYLITGIPEMALQDRPAPVGGNEQSGGGGGNIG 228
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
A A + SG N D P L FLR QFQ +R ++Q N
Sbjct: 229 AALDRSSNLASSGESGGN----DESP--------------LAFLRRQAQFQQMRNVIQQN 270
Query: 297 PQIL 300
P++L
Sbjct: 271 PEML 274
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 147/314 (46%), Gaps = 73/314 (23%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 227 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 282
Query: 83 GASTVSAAPANQAQTT--------------------------SSAPPTSTQP--TTTSQT 114
+ + APA Q+ ++ PTS P TT S
Sbjct: 283 --AVTTPAPATPQQSNPATTAAVSSSTAAAVAQAPAPAPALAPTSTPTSITPASTTASSE 340
Query: 115 PAPTVAPPQSVPESAP---PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSN 171
PAP A Q P P P AA +P + + SS S+++ A S LV G +
Sbjct: 341 PAPASATQQEKPTEKPTETPVAA-------SPTSTDSTSGDSSRSNLFEDATSALVTGQS 393
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARA 226
E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A +
Sbjct: 394 YENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAAS 450
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
+ Q+ A +SG G P L+FLRN QF
Sbjct: 451 TGTPQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQF 489
Query: 287 QALRTMVQANPQIL 300
Q +R ++Q NP +L
Sbjct: 490 QQMRQIIQQNPSLL 503
>gi|47496878|dbj|BAD19842.1| RAD23 protein-like [Oryza sativa Japonica Group]
Length = 110
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 26 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 85
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
Q A ASA QA + PA QA PTSG
Sbjct: 86 GQ------AEASAVVQALSVPAAVQA------FPTSG 110
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 77/302 (25%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K +
Sbjct: 126 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK---A 182
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA-----PAP 137
G T SA P A PT+ ++TS PAPT S PPPAA P+
Sbjct: 183 GQGT-SAPP--------EASPTAAPESSTSFPPAPTSG------MSHPPPAAREDKSPSE 227
Query: 138 APAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEATVQQILDMGGGSWDRETVIRA 195
AP +P V S + AAS LV GS E + +I+ MG ++RE V+ A
Sbjct: 228 ESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAA 284
Query: 196 LRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA 255
LRA+YNNP RAVEYL +GIP S + G+ ++QPA
Sbjct: 285 LRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA---------- 324
Query: 256 NPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV---------------QANPQIL 300
+ AG L+FLR+ QFQ +R ++ Q NPQ+L
Sbjct: 325 --------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL 370
Query: 301 QQ 302
QQ
Sbjct: 371 QQ 372
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 138/297 (46%), Gaps = 62/297 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 60
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ A+P ++++S PP P + P PT +S E + P +
Sbjct: 61 TSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTAREDKSPSEES--------VPTTS 109
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 110 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 166
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA T G NP
Sbjct: 167 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----TEGAGENP----- 207
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMV---------------QANPQILQQWA 304
L+FLR+ QFQ +R ++ Q NPQ+LQQ +
Sbjct: 208 --------------LEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQIS 250
>gi|297721185|ref|NP_001172955.1| Os02g0465112 [Oryza sativa Japonica Group]
gi|255670888|dbj|BAH91684.1| Os02g0465112, partial [Oryza sativa Japonica Group]
Length = 92
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 74/100 (74%), Gaps = 12/100 (12%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S+ +D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+
Sbjct: 5 STEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYT 64
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
G+P Q A ASA QA + PA QA PTSG
Sbjct: 65 GLPGQ------AEASAVVQALSVPAAVQA------FPTSG 92
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 156/310 (50%), Gaps = 26/310 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E++FVVVM++K K + + + + +T S + QP++++ P T A
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATPQPSSSATAPTTTSA 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + A + +S S + QA S LV G++ E TV ++
Sbjct: 120 PSGTTGTES----------TDGGAGGGQTSSTASSSSEFDQALSTLVTGTDYERTVNDMV 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQ----A 232
MG + R V+RAL+A+YNNP RA+EYL P E+ A P + AGGQ
Sbjct: 170 GMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQPRGSGAGGQQVPLT 226
Query: 233 GNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ-GLPNMGSNAGAGTLDFLRNSQQFQALR 290
+PP Q+PA + S P+A P PQ GL G + + L L QFQALR
Sbjct: 227 SSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNVLQGLSQLPQFQALR 284
Query: 291 TMVQANPQIL 300
VQ NP +L
Sbjct: 285 AAVQQNPGLL 294
>gi|222622818|gb|EEE56950.1| hypothetical protein OsJ_06656 [Oryza sativa Japonica Group]
Length = 242
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 158 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 217
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
Q A ASA QA + PA QA PTSG
Sbjct: 218 GQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 133/302 (44%), Gaps = 66/302 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +G +T + TS +VA
Sbjct: 58 EYNIDEKKFIVVMVTKLK-TGNGHTTTEEEHTTNTDNKEESSTTS------------SVA 104
Query: 121 PPQSVP--ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P S P + A P + A A V GQA S L+ G + V
Sbjct: 105 QPSSNPTVQGASNPTNTVQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNN 155
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q
Sbjct: 156 IVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQ 200
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
+AQ+ + G L FLR QFQ +R ++Q NPQ
Sbjct: 201 LEAQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQ 236
Query: 299 IL 300
+L
Sbjct: 237 LL 238
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 151/335 (45%), Gaps = 63/335 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ K LK F IE D +S VK I+T +G + S LI+ GK+L+D T+
Sbjct: 5 VKLTFKDLKNERFTIEAGTADTISTVKARIQTEKG---WEPSTVKLIYSGKILQDAQTVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K+K T A ++ + S P S+ P T P A
Sbjct: 62 SYNIDEKGFIVCMVSKAK-------TAPKASSSSSAAAPSTPVKSSTPVQTPSAPIANAA 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP A P P PAP A P A + S+L GS E+ + Q+
Sbjct: 115 SSSTVP--AAVPETPTPAPQVAATSQPTTAAFND--------PSSLAMGSARESAILQMT 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
+MG + R V A+RAA+NNP+RAVEYL +GIPE Q PP + A PP Q
Sbjct: 165 EMG---FPRPDVEAAMRAAFNNPDRAVEYLMTGIPEHLQREAPPAQSSRA------PPTQ 215
Query: 239 TQAQ-----------QPAAPAPTSGPNANPLDLFP---------QGLPNMGSNAGA---- 274
QPAA A + P++LF +G P G A
Sbjct: 216 PTTGATAAPAATTESQPAAAAAAAADVDEPVNLFEAAAAQRSGSRGTPAGGRGGAAVNPL 275
Query: 275 --------GTLDFLRNSQQFQALRTMVQANPQILQ 301
LDFLRN+ QFQ LR ++Q +PQ+L+
Sbjct: 276 AALAGGGGANLDFLRNNPQFQQLRQVIQEHPQMLE 310
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 149/309 (48%), Gaps = 42/309 (13%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M++ K L+ F + +V P+ V +VK+ I+ QG Y +Q LI+ G++L D T+
Sbjct: 1 MQLTFKNLQQQKFVVPDVDPKTTVLEVKQKIKEQQG---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
EE + E F+V M VS APA++ +T + +TT TP T
Sbjct: 58 EEYDIKEKDFIVCM-------------VSRAPASKVKTEQKTE--EKKQSTTESTPLNT- 101
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
++ P PAP P A A + + + G S+LV G+ A + +
Sbjct: 102 --------TSTSPKTPAPESVPEQTQPAAVAAAPTAAPIVGD--SSLVLGAQRNAVIDNM 151
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V A+RAA+NNP+RAVEYL +GIPE +A A
Sbjct: 152 VEMG---YERSQVELAMRAAFNNPDRAVEYLLNGIPESVRQAQEQEQAAAAAAATAATNA 208
Query: 240 QAQQ-PAAPAPTSGPNANPLDLFP------QGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
A AAPA ++ P A P +LF QG G+ +G L FLR QFQ LR +
Sbjct: 209 TAASGNAAPANSTQP-AAPGNLFEQAAAHAQGEEESGA-SGEDPLGFLRELPQFQQLRQI 266
Query: 293 VQANPQILQ 301
VQ NPQ+L+
Sbjct: 267 VQQNPQMLE 275
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 143/308 (46%), Gaps = 83/308 (26%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE +G D +P S Q LI+ GK+L D + + K+ E +FVVVM+TK+K
Sbjct: 62 QVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNFVVVMVTKAK--- 118
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
A ++AP ++ ++ A + +P+T + VA P PP AP+ P
Sbjct: 119 --AGLATSAP---SEPSAPAAANTLEPSTPTPPAPAIVAMPL-------PPPAPSEEQKP 166
Query: 142 APAPAPAPAPVSSVSDVY--------GQAASNLVAGSNLEATVQQILDMGGGSWDRETVI 193
A PA P + + AAS LV GS E + +I+ MG ++RE V+
Sbjct: 167 AEEPAAGTPPEAGSGSLPSSGSSGQEDDAASTLVTGSEYETMLTEIMSMG---YERERVV 223
Query: 194 RALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT----QAQQPAAPAP 249
ALRA+YNNP RAVEYL +GIP G+P ++ ++Q P PAP
Sbjct: 224 AALRASYNNPHRAVEYLLTGIP-----------------GSPEPESGPVQESQAPEQPAP 266
Query: 250 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV---------------Q 294
G N L+FLR+ QFQ +R ++ Q
Sbjct: 267 EGGEN---------------------PLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQ 305
Query: 295 ANPQILQQ 302
NPQ+LQQ
Sbjct: 306 ENPQLLQQ 313
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 421
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 129/226 (57%), Gaps = 16/226 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K +++ ++ AP AQ + S TST ++ APT A
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAATTSAPAPEAPKPPAQDSGS---TSTAAPPSNPPAAPTPA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE A + A A P SS + A+S LV G+ EA + +I+
Sbjct: 118 AVPIPPEEAKQEQS-------AEATEPQQPASSSGGNQGLDASSALVTGAEYEAMLTEIM 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---QTAVPPV 223
MG ++RE V+ ALRA++NNP RAVEYL +GIP Q + PPV
Sbjct: 171 SMG---YERERVVAALRASFNNPHRAVEYLLTGIPSSPVQESNPPV 213
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 129/285 (45%), Gaps = 69/285 (24%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 55 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTS-- 112
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP---TVAPPQSVPESAPPPAAPAPAP 139
P+S P TS T AP T PP + PP AP
Sbjct: 113 --------------------PSSAVPPETSPTAAPESSTTFPPAPASGMSHPPPAPREDK 152
Query: 140 APAPAPAPAPAPVSSVSDVYG--------QAASNLVAGSNLEATVQQILDMGGGSWDRET 191
+P+ PA +P S V AAS LV GS E + +I+ MG ++RE
Sbjct: 153 SPSEESIPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERER 209
Query: 192 VIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTS 251
V+ ALRA+YNNP RAVEYL +GIP S + G+ ++QP A
Sbjct: 210 VVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPTTEA--- 256
Query: 252 GPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
AG L+FLR+ QFQ +R ++Q N
Sbjct: 257 --------------------AGENPLEFLRDQPQFQNMRQVIQQN 281
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 136/297 (45%), Gaps = 63/297 (21%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 38 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 97
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ A+P ++++S PP P + P PT +S E + P +
Sbjct: 98 TSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTAREDKSPSEES--------VPTTS 146
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 147 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 203
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA
Sbjct: 204 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----------------- 236
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMV---------------QANPQILQQWA 304
+ G L+FLR+ QFQ +R ++ Q NPQ+LQQ +
Sbjct: 237 -------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQIS 286
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 108/207 (52%), Gaps = 22/207 (10%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IET +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 42 VKALKEKIETEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKATAT 101
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ + TTS+ + T + TP+P +AP P P P PA
Sbjct: 102 PMPSPVVGQQSNPATTSTVSSSKASAVTPAPTPSPVLAPVTPTPAGEPAPTVAPKEEKPA 161
Query: 143 PAPAPAPAPVS-------------------SVSDVYGQAASNLVAGSNLEATVQQILDMG 183
P AP +S S S+++ A S LV G + E V +I+ MG
Sbjct: 162 EKPVEAPVALSPSSSDSLTGDASGDASGDASRSNLFEDATSALVTGQSYENMVTEIMSMG 221
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYL 210
++RE VI ALRA++NNP+RAVEYL
Sbjct: 222 ---YEREQVIAALRASFNNPDRAVEYL 245
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 133/300 (44%), Gaps = 81/300 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM VS GA + P T SS P + SQ
Sbjct: 61 EYKIDERNFVVVM-----VSKVGAGNQTHRP-----TVSSRPLAFCSSSDGSQGL----- 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A+S LV G+ EA + +I+
Sbjct: 106 ----------------------------------------DASSALVTGAEYEAMLTEII 125
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP RAVEYL +GIP PV ++ PA
Sbjct: 126 SMG---YERERVVAALRASFNNPHRAVEYLLTGIPS----SPVQESNP---PAQAPAPLP 175
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ PA+PA P A P G L FLRN QF +R +Q NP +L
Sbjct: 176 TESPASPAEGCFP-ACP---------------GENPLAFLRNQPQFLHMRQAIQQNPNLL 219
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 138/298 (46%), Gaps = 62/298 (20%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE +G D +P + Q LI+ GK+L D ++E + E +FVVVM+TK+K
Sbjct: 36 EVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILNDDVPIKEYHIDEKNFVVVMVTKAKAGQ 95
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
S + +P ++++ PP PT+ P PP S + +P + A A
Sbjct: 96 STPAPPEVSPTAAPESSTPFPPA---PTSGMSHP-----PPASREDKSP---SEESATAT 144
Query: 142 APAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 201
+P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YN
Sbjct: 145 SPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 201
Query: 202 NPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 261
NP RAVEYL +GIP S + G+ +QPA A
Sbjct: 202 NPHRAVEYLLTGIP----------GSPEPEHGSVQESQVPEQPAVEA------------- 238
Query: 262 PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV---------------QANPQILQQWA 304
AG L+FLR+ QFQ +R ++ Q NPQ+LQQ +
Sbjct: 239 ----------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQIS 286
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 137/300 (45%), Gaps = 71/300 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F IE +P D V+ VK I+ Q +PA QQ LIH GK+LKD T L
Sbjct: 1 MKLTVKTLQGNAFSIEAEPTDTVAVVKTKIQETQE---FPAIQQKLIHAGKILKDDTALS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + EN F+VVM++K+K S + TS+ P T+T T T P P+ +
Sbjct: 58 EYNIKENDFIVVMVSKAKGS---------------RPTSALPSTATAQTPTVPPPVPSTS 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S S P + + P A + S+ +AA+ V Q+
Sbjct: 103 AVSSSETSTPLSVSSSTRPTTEGTMASGSSGTSTTPSSTAEAAN-----------VGQLC 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG + E V L+AA+ NP+RAVEYL +GIPE NP +
Sbjct: 152 DMG---FPEEQVRSCLQAAFGNPDRAVEYLMNGIPENLV--------------NPTS--- 191
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
AA APT+G AG+L+ LRN QF + R +V+ NP L
Sbjct: 192 ----AAAAPTTG------------------GPSAGSLEQLRNHPQFASFREVVRTNPAAL 229
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 154/329 (46%), Gaps = 62/329 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAP---ANQAQTT------SSAPPTSTQPTTTSQ 113
++ E +FVV V + + AP +QA+T+ S A PT+T ++TS
Sbjct: 65 RIDEKNFVV-------VMVTKVGVLMPAPFFWVSQAKTSPGTSVPSEASPTATPESSTSF 117
Query: 114 TPAPTVA---PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
AP PP + E P AP +P P+ S + AAS LV GS
Sbjct: 118 PSAPASGMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGRE--EDAASTLVTGS 175
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 230
E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL + E P GG
Sbjct: 176 EYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTVRKELLQEP-------GG 225
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LDFLRNSQQFQA 288
+ P + + + P +PA G+ G G L+FLR+ QFQ
Sbjct: 226 ERWGGPGRAERRPPVSPARAEYAG--------------GAAVGTGENPLEFLRDQPQFQN 271
Query: 289 LRTMV---------------QANPQILQQ 302
+R ++ Q NPQ+LQQ
Sbjct: 272 MRQVIQQNPALLPALLQQLGQENPQLLQQ 300
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 151/327 (46%), Gaps = 49/327 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P ++++K I+ QG + Q +I GK+L D +
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSITIANLKLQIKESQG---FEPELQKIIFSGKILSDEKLIS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA--PT 118
+ +V E F V+ML K K A TV A T+++A P+ST + TPA P
Sbjct: 58 DIEVKEKDFFVIMLMKPKT----APTVPAP-----STSAAAVPSSTSAPVQTSTPAAPPA 108
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
+ P + PES P A + PA AP G + GS L+ T+ +
Sbjct: 109 TSTPSANPESTPATTTEPQAAVDSSTPAVAP----------GTQDPGFLTGSGLQTTIDE 158
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-QTAVPPVARASAGGQAGNPPA 237
I++ G + RE V++A+RAA+NNP+RAVEYL +GIP A+PP A AG
Sbjct: 159 IVN--GMGFPREEVVKAMRAAFNNPDRAVEYLMTGIPAGLDALPPSAAPRAGAPTPATAT 216
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG---------------------AGT 276
A PAP + P +LF ++ +
Sbjct: 217 APTPGANAVPAPVA-PTTASRNLFEAAAQHVAQQRQPAAAATPAAAPAGAAGATANTSRV 275
Query: 277 LDFLRNSQQFQALRTMVQANPQILQQW 303
L+ LRN+ Q LR +VQ NPQ+LQ +
Sbjct: 276 LESLRNNPQMVQLRQLVQTNPQLLQPF 302
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 153/311 (49%), Gaps = 39/311 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK FEI+ +P + V VK+ I ++G +V Q LI+ GK+LKD T+E
Sbjct: 1 MKLTFKDLKQEKFEIDAEPSETVGQVKERICQLKGWEV---PQLKLIYSGKILKDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+V M++K K SSS SAAP S P+T S+ A T A
Sbjct: 58 SYKVEEKGFIVYMVSKPKTSSS-----SAAP-------------SQGPSTPSRAAASTPA 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + PA AP P+PA A S+ +D S L+ G E V Q+
Sbjct: 100 APPAPAPATSAPAQAAPPATPSPAATGASQSGSAFND-----PSALMTGRENENAVAQME 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ + RA+RAA+ NP+RAVEYL SGIP+ + A A
Sbjct: 155 SMG---FARDDINRAMRAAFFNPDRAVEYLLSGIPDNIQQEQQQQQQQQQAAAAAAASPT 211
Query: 241 AQQPAAPAP-TSGPNANPLDLFP----QGLPNMGSNAGAG-----TLDFLRNSQQFQALR 290
Q P+ + T+ P++LF G + G +G LDFLR++ FQ LR
Sbjct: 212 PQAPSGESGLTTAGGDEPVNLFEAAAQAGTQDTGRAGRSGGEALPNLDFLRHNPHFQQLR 271
Query: 291 TMVQANPQILQ 301
+VQ NPQ+L+
Sbjct: 272 QLVQQNPQMLE 282
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 109/215 (50%), Gaps = 37/215 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D Y A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQLSFQIEIDPEETVKALKLKIEVEKGKD-YAADYQRLIYAGKILLDDNKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK K S + AS+ S A + S+ S +T +TP P
Sbjct: 60 TYNIDEKKFIVIMVTKPKPSETQASSTSTPEAGEC-AASTVVGDSKDKSTAEETPQP--- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + PE PAAP + A + E+TVQ I+
Sbjct: 116 PTAAEPERTAEPAAPV-----------------------------ISAELDFESTVQSIM 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
DMG ++R+ V +ALRA+++N ERAVEYL +GIP
Sbjct: 147 DMG---YNRQQVEQALRASFSNRERAVEYLITGIP 178
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats.
Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 59/315 (18%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ K LK F I+ V P + VK+ I+ VQG D+ Q LI+ GK+L D T+
Sbjct: 1040 MKLTFKDLKQQKFTIDNVDPRCTILQVKEMIQEVQGHDL---KHQKLIYSGKILLDSNTV 1096
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E F+V M+ K K Q P+ ++
Sbjct: 1097 ESYDIKEKDFIVCMVQKPK----------------------------------QVPSASI 1122
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+V + P A AP + P + VSS S+ + S LV G + ++ +
Sbjct: 1123 VAESTVSTNQSDPKASAPETSLPSVPGTS---VSSSSETFNDPNS-LVVGLLCDTAIKNM 1178
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V A+RAA+NNP+RAVEYL +GIPE + + ++S+ Q
Sbjct: 1179 MEMG---YERTQVENAMRAAFNNPDRAVEYLLTGIPEHLSRELLQQSSSSQQVSRAQQIV 1235
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQ-------------GLPNMGSNAGAGTLDFLRNSQQF 286
Q+ + P T + N +L Q G MGSN A +L FLRN+ QF
Sbjct: 1236 QSTPTSTPTSTPSRSENLFELAAQVSQQGRERLNTSSGNSLMGSN-NAESLAFLRNNPQF 1294
Query: 287 QALRTMVQANPQILQ 301
LR +VQ PQ+L+
Sbjct: 1295 LMLRRLVQTQPQMLE 1309
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 132/300 (44%), Gaps = 84/300 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ P++ V +K IE +G D Y A Q LI+ GK+L D L
Sbjct: 1 MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKD-YAADNQRLIYAGKILLDDNKLH 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK K S NQ +++SAP +T S V
Sbjct: 60 TYNIDEKKFIVIMVTKPKTSD-----------NQQASSTSAPEAGESASTESGDGKSKVV 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P P PA P A P PV+S + E+TVQ I+
Sbjct: 109 EEK-----------PKPQPAAEPERASEP-PVTS-------------NEPDFESTVQSIM 143
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++R+ V +ALRA++NN ERAVEYL +GIPE+ A SA
Sbjct: 144 DMG---YNRQQVEQALRASFNNRERAVEYLITGIPEELLQEQEAEESA------------ 188
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ +P L FLR+ QFQ +R ++Q NP +L
Sbjct: 189 -------------DEDP-------------------LGFLRDQPQFQQMRAVIQQNPNLL 216
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421 SS1]
Length = 396
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 119/216 (55%), Gaps = 22/216 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ + D V D+K+ I+ QG + Q LI+ GKVL D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVGDLKRKIQETQG---HALESQKLIYSGKVLPDSKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTV-SAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
++ E F+V+M++K K + S A V S AP A ++AP Q T+++ AP
Sbjct: 58 SCEIKEKDFLVLMVSKPKPAPSNAPPVTSGAPVAAAPPAAAAPAPVPQATSSATALAPAP 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A PQ PA AP AP PA + + G L++TV +
Sbjct: 118 AAPQPPNAPILTPAQAAPIEGAAPVPA---------------GDGSFLTGEALQSTVNNM 162
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++MG ++RE V+RALRA++NNPERAVEYL++GIP
Sbjct: 163 IEMG---FEREQVMRALRASFNNPERAVEYLFNGIP 195
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 136/302 (45%), Gaps = 38/302 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE + E V ++KK I V+GS+ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFEAEKTVFELKKKIFDVRGSE-YIVEKQKLIYAGVILVDDHTIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SS+ S + A Q + + P ++ T+ S T +
Sbjct: 60 SYNVDEKKFIVVMLTRDTASSTCQSRIKEADNAQNRLCLNTQPLPSEITSNSDTFCGSTN 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A + +VS + +A SNL+ G TVQ ++
Sbjct: 120 QPIIIS-----------ATNETKQRNDLVGELENVS-LQSRAESNLLMGDEYTQTVQSLI 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPVARASAGGQAGNPPAQT 239
+MG + RE V RA+ A++NNPERAVEYL +G+P E + V S NP
Sbjct: 168 EMG---YPREQVERAMSASFNNPERAVEYLINGLPAEDENIFHVDEEST-----NPSLVQ 219
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q + T + D F +FLR+ QF +R+++ NP +
Sbjct: 220 SGPQNISALSTGHSTGSSSDPF----------------EFLRSQPQFLQMRSLIYQNPHL 263
Query: 300 LQ 301
L
Sbjct: 264 LH 265
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 144/328 (43%), Gaps = 49/328 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V D+KK I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFSIDFDPEKTVLDLKKTIFNERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKS-KVSSSGAST-----VSAAPANQAQTTSSAP------------ 102
KV E F+VVMLT+ V+ SG+ T V++A Q T++ P
Sbjct: 60 SYKVDEKKFIVVMLTRDISVTGSGSITNTTDAVASAQRKTQQETTAQPKAAAAESKAEAK 119
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ- 161
PTS T +S+ E P + A A A A S D+ G+
Sbjct: 120 PTSKSNAVAEGTTKTNKTTNESIVE---PASTAAVAGAARATDVDVTASDYSSIDLVGEL 176
Query: 162 --------AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +G
Sbjct: 177 ANASLQTRAESNLLMGEEYNRTVASMIEMG---YARDQVERAMSASFNNPERAVEYLITG 233
Query: 214 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
IP++ ++ Q Q S ++ +++
Sbjct: 234 IPQEESLFNAGHDDEDVARAGSLLQQQVGGGGDGGSAS---------------DLQTDSS 278
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQILQ 301
A +FLR+ QF +R+++ NP +L
Sbjct: 279 ADPFEFLRSQPQFLQMRSLIYQNPHLLH 306
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 149/315 (47%), Gaps = 42/315 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ VKTL+ F+++V D + VK+ I+ QG + +QQ LI GK+L D +E
Sbjct: 4 LQITVKTLQQKQFKLDVDSSDTILSVKEKIQESQG---HAVAQQKLIFSGKILVDDKKVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+VVM+ K+K + + +S +++ + ++ + P T P A T
Sbjct: 61 DYNITEKDFLVVMVAKAKATPASSSAAASSASTPKESATQEKPAETAPKPAETAAAATTP 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P S PP + PA PA S LV GS LE+ V+ ++
Sbjct: 121 SNIASPASEPPASTPAAPTETTTTATPAD------------TFSQLVTGSQLESVVENMM 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R RALRA++NNP+RAVEYL++GIPE + +A Q Q +
Sbjct: 169 SMG---FERAQCERALRASFNNPDRAVEYLFNGIPEHI----LNEMNAAQQ------QPE 215
Query: 241 AQQPAAPAPTSGPNANP----LDLF----------PQGLPNMGSNAGAGTLDFLRNSQQF 286
QQ + PNAN ++LF Q + +L RN+ F
Sbjct: 216 VQQDTNTQSPTTPNANDANASMNLFAAAQQHAQQQQQQQQQEQNQNLNASLANFRNTPHF 275
Query: 287 QALRTMVQANPQILQ 301
Q +R +VQ NP +LQ
Sbjct: 276 QQIRQLVQTNPALLQ 290
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 147/309 (47%), Gaps = 46/309 (14%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M + K L+ F I +V + K+S++K+ I+T Q Y +Q LI+ G++L D T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E F+V M+++ K S+S + ++ N + P + P+ TV
Sbjct: 58 GEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASV---------PEKKVEAPSSTV 108
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A S ++ A AP+ A + AP+ A+ L G+ V+ +
Sbjct: 109 AESTSTTQTVA-----AAAPSNPDTTATSEAPID---------ANTLAVGAQRNVAVENM 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V RA+RAA+NNP+RAVEYL +GIPE + +
Sbjct: 155 VEMG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDI-------LNRQREESAAALAA 204
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-------AGAGTLDFLRNSQQFQALRTM 292
Q QQ A APTS P +LF Q + N G L FLR+ QFQ LR +
Sbjct: 205 QQQQSEALAPTS--TGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQI 262
Query: 293 VQANPQILQ 301
VQ NPQ+L+
Sbjct: 263 VQQNPQMLE 271
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 150/305 (49%), Gaps = 47/305 (15%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP-----------TTTSQTPAP-TVA 120
++ + + +++ A + A A Q+ ++A + P T+T TPAP +
Sbjct: 73 LVARPEAATTAAPATATATAGQSHPATAASAGAGAPARGPALPAAPATSTRATPAPASST 132
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
SVP ++ A P P P+P P A A SS + QAA L+ E V +I+
Sbjct: 133 CAMSVPATS-TRATPRLPPCPSPTPDDAIAGPSSRAQPSEQAARALLTRPASEQMVAEIV 191
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-----PPVARASAGGQAGNP 235
MG ++RE V+ ALRA++NNP RAVEYL G+P A PP A +S G++
Sbjct: 192 SMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASAAEVEPPQAGSSGAGRS--- 245
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ +A + AA TSG +PLD+ LRN +F+ LR ++Q
Sbjct: 246 -SAVEADEGAA---TSGSGGHPLDV-------------------LRNLPEFEELRRIIQH 282
Query: 296 NPQIL 300
P +L
Sbjct: 283 FPSLL 287
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 145/325 (44%), Gaps = 53/325 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++K+ I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKRQIFNERGAE-YFVEKQKLIYAGVILTDDRTIN 59
Query: 61 ENKVAENSFVVVMLTKS-------KVSSSGASTVSAAPAN-QAQTTS-----------SA 101
KV E F+VVMLT+ +++ VS+ A QA+ T+ S
Sbjct: 60 SYKVDEKKFIVVMLTRDISGTSSGSSNNTNTEAVSSQQARKQAKETTERSTQDEPLVESK 119
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG- 160
P + +++S+ A T E A +PAPA + + V ++
Sbjct: 120 PAVQVKESSSSKKGAKTNKITSEAGEEVGSTGAGSPAPASTTGSTTDYSSIDLVGELANT 179
Query: 161 ----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+A SNL+ G TV +++MG + RE V RA+ A++NNPERAVEYL +GIP+
Sbjct: 180 SLQTRAESNLLMGEEFNRTVASMVEMG---YPREQVERAMAASFNNPERAVEYLINGIPQ 236
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
+ + +A N + PA A A+P
Sbjct: 237 EENLFTPGDDEESSRASNIHQGAASDLPAESA------ADP------------------- 271
Query: 277 LDFLRNSQQFQALRTMVQANPQILQ 301
+FLR+ QF +R+++ NP +L
Sbjct: 272 FEFLRSQPQFLQMRSLIYQNPHLLH 296
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 140/303 (46%), Gaps = 47/303 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KTL+ F++E+ ++ V +K+ IE +G D YP LI+ GK+L D L+
Sbjct: 1 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E SFVV+M+ K K + + A + Q +++P STQ ++T+Q + A
Sbjct: 61 EYNIDEKSFVVIMVAKPKPAPA-AVAPAPVTTTIPQAATASP--STQASSTAQEDSKPEA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P E+ A + + A P S + +A S L G+ E V +I+
Sbjct: 118 KPD---EAKSTSTETAASATTTASTPAASTPRSYIE----EAESALATGTEYEGLVTEIM 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V+RAL+A++NNP+RAVEYL +GIP+ +P GGQ
Sbjct: 171 NMG---FERDQVVRALQASFNNPDRAVEYLTTGIPD---LPSERVGDQGGQDEGEEETAA 224
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+L+FLR QF +R MVQ NP +L
Sbjct: 225 EG-------------------------------VSSLEFLRTQPQFITMRRMVQQNPGVL 253
Query: 301 QQW 303
Q
Sbjct: 254 PQL 256
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 130/300 (43%), Gaps = 67/300 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSLQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K T + P TS + T + +
Sbjct: 58 EYNIDEKKFIVVMVTKPK-------------------TGATPKTSEEQRTEGDKKEESTS 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P S P A + A AP + ++ S L+ G + V I+
Sbjct: 99 SATTQPSSNPNVQDTTRAASNVQEQPVAAAPAAGQAE------SALLMGEDYNTMVNNIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP +
Sbjct: 153 DMG---YEREQVVQALRASFNNPDRAVEYLITGIPAQLFEDP---------PEDPPEAQE 200
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q + P L FLR QFQ +R ++Q NPQ+L
Sbjct: 201 QLQDQSQDP---------------------------LAFLRLQPQFQQMRQVIQQNPQLL 233
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 150/315 (47%), Gaps = 52/315 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA---PANQAQTTSSAPPTSTQPTTTSQTPAP 117
K+ E F+VVMLT+ +S+ AS+ S N+A+ + + T +S + +
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGS- 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---------AASNLVA 168
P ESAP + + A P SS SD+ G+ A SNL+
Sbjct: 119 --TPISGAVESAPSVSVSSTGTA-------IQRPYSS-SDLVGELANASLQTRAESNLLM 168
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP + + +A
Sbjct: 169 GEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE----SLFNA 221
Query: 229 GGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
G + N Q P AP P S P + LP S+ +FLR+ QF
Sbjct: 222 GDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEFLRSQPQF 262
Query: 287 QALRTMVQANPQILQ 301
+R+++ NP +L
Sbjct: 263 LQMRSLIYQNPHLLH 277
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 150/315 (47%), Gaps = 52/315 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA---PANQAQTTSSAPPTSTQPTTTSQTPAP 117
K+ E F+VVMLT+ +S+ AS+ S N+A+ + + T +S + +
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGS- 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---------AASNLVA 168
P ESAP + + A P SS SD+ G+ A SNL+
Sbjct: 119 --TPISGAVESAPSVSVSSTGTA-------IQRPYSS-SDLVGELANASLQTRAESNLLM 168
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP + + +A
Sbjct: 169 GEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE----SLFNA 221
Query: 229 GGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
G + N Q P AP P S P + LP S+ +FLR+ QF
Sbjct: 222 GDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEFLRSQPQF 262
Query: 287 QALRTMVQANPQILQ 301
+R+++ NP +L
Sbjct: 263 LQMRSLIYQNPHLLH 277
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 141/301 (46%), Gaps = 36/301 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SSS + +S +N+ TS+ + P + T +
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNRNQLSVKESNK--LTSTDDSKQSMPC---EEANHTNS 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E + P + A A + S +A SNL+ G TV ++
Sbjct: 114 PSSTNTEDSVLSRETRPLSSDELIGELAQASLQS------RAESNLLMGDEYNQTVLSMV 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 168 EMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNESTNP----- 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ P+ P P S +A + + + +FLR+ QF +R+++ NP +L
Sbjct: 216 SLIPSGPQPASATSA-----------ERSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLL 264
Query: 301 Q 301
Sbjct: 265 H 265
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 141/301 (46%), Gaps = 36/301 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SSS + +S +N+ TS+ + P + T +
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNRNQLSVKESNK--LTSTDDSKQSMPC---EEANHTNS 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E + P + A A + S +A SNL+ G TV ++
Sbjct: 114 PSSTNTEDSVLSRETRPLSSDELIGELAQASLQS------RAESNLLMGDEYNQTVLSMV 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 168 EMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNESTNP----- 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ P+ P P S +A + + + +FLR+ QF +R+++ NP +L
Sbjct: 216 SLIPSGPQPASATSA-----------ERSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLL 264
Query: 301 Q 301
Sbjct: 265 H 265
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 88/142 (61%), Gaps = 12/142 (8%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+ + +V G LEATV I+ MG ++RE V++ALRAA+NNP+RAVEYL +GIPEQ P
Sbjct: 5 SGAGMVMGPELEATVANIMTMG---FEREQVLKALRAAFNNPDRAVEYLLTGIPEQAEAP 61
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAG-AGTLDF 279
A + PA A Q ++ L+LFP+G+P+M G AG G LDF
Sbjct: 62 RPAAQAQ-------PAAAAAPQAPQADVSAALGGGALNLFPEGIPDMSGDGAGDDGMLDF 114
Query: 280 LRNSQQFQALRTMVQANPQILQ 301
LR + QFQA+R MVQ NPQILQ
Sbjct: 115 LRENPQFQAIRAMVQGNPQILQ 136
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 135/305 (44%), Gaps = 44/305 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +GS+ Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGSE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ S + NQ S TST + S
Sbjct: 60 SYNVDEKKFIVVMLTRDS---------SYSNRNQLSVKESDKLTSTDDSRHS-------M 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAP--VSSVS--DVYGQAASNLVAGSNLEATV 176
P + S P + P P+ + ++ + +A SNL+ G TV
Sbjct: 104 PCEEANHSNSPSCRNTDDSVLSRETRPLPSDELIGELAQASLQSRAESNLLMGDEYNQTV 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+++MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 164 LSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGTF----YNGLNESTNPS 216
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
Q A+ T P +++ + +FLR+ QF +R+++ N
Sbjct: 217 LIPSGPQTASATSTERP----------------ADSNSDPFEFLRSQPQFLQMRSLIYQN 260
Query: 297 PQILQ 301
P +L
Sbjct: 261 PHLLH 265
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 367
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 26/260 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KT + F+I++ PE+ V +K+ IE+ +G D +P Q LI+ G++LKD T L+
Sbjct: 1 MQVTLKTPQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVEDQKLIYAGEILKDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E V+ SK ++ VS++P A T ++ P S + TS PA
Sbjct: 61 EYNIEEKDSVL-----SKPATD--FLVSSSPGTPASTPAAVTPASRR---TSSEPA---- 106
Query: 121 PPQSVPESAPPPAAPAPAP-APAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PE PP A AP A P A +S S++ A L G + + V +I
Sbjct: 107 -----PEQEQPPEELADAPVATGPTSTGWTAGDASASNMLAGATGALTPGQSYQDMVSEI 161
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG +++ VI ALRA++N+P RAVEYL +GIP VA G PP+
Sbjct: 162 MSMG---YEQAQVIAALRASFNDPHRAVEYLLTGIPGDRGSDTVADLPRAASMGAPPSPA 218
Query: 240 QAQQPAAPAPTSGPNANPLD 259
A + A S P PL+
Sbjct: 219 SA---TSTAMASSPEGTPLE 235
>gi|356498318|ref|XP_003518000.1| PREDICTED: uncharacterized protein LOC100787330 [Glycine max]
Length = 159
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++ F TLKGTHF ++V P D V+DVK NIE QG DVYP +Q+MLIHQGKVLKD TTLE
Sbjct: 45 LRGFEVTLKGTHFVVQVNPRDTVADVK-NIEIAQGVDVYPGAQRMLIHQGKVLKDATTLE 103
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E++ VV+ML+K
Sbjct: 104 ENKVVEDNSVVIMLSK 119
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 87/140 (62%), Gaps = 20/140 (14%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S LV+G+ LEA V QI+ MG ++RE V+ A+RAA+NNP+RAVEYL +GIPE +
Sbjct: 129 SGLVSGAELEAAVTQIMTMG---FEREQVMNAMRAAFNNPDRAVEYLLTGIPETS----- 180
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAGAG-TLDFLR 281
QA A A P A A G N L+LFP+G+P+M G +G G LDFLR
Sbjct: 181 -------QAPPAAAAPAADAPDASAALGG---NALNLFPEGIPDMAGDRSGDGQMLDFLR 230
Query: 282 NSQQFQALRTMVQANPQILQ 301
++ QFQA+R MVQ P ILQ
Sbjct: 231 DNPQFQAIRAMVQGQPHILQ 250
>gi|167998815|ref|XP_001752113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696508|gb|EDQ82846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V ++ VS VK+ IE QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLQVAEDELVSSVKRKIEGSQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKVAEN F+VVMLTK
Sbjct: 61 DNKVAENGFLVVMLTK 76
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 137/286 (47%), Gaps = 72/286 (25%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+VSDVKK IE +G++ + AS Q LIH GKV++D TL++ KV + F+VVM
Sbjct: 136 QVSDVKKKIEAEKGNE-FSASSQTLIHSGKVMEDEKTLKQYKVTDKGFIVVMAV------ 188
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT-PAPTVAPPQ--SVPESAPPPAAPAPA 138
+ P+ + + P + +P + Q+ PA TVA Q +VP S P AA
Sbjct: 189 -------SKPSKEPTASVEKLPEAAKPVQSEQSIPANTVASVQETTVPRSDVPAAA---- 237
Query: 139 PAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRA 198
P S+ + S LV G+ E + +I+ MG ++R VIRA+RA
Sbjct: 238 -----------GPESATGE------SALVTGAEYERAISEIVGMG---FERSMVIRAMRA 277
Query: 199 AYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAG-NPPAQTQAQQPAAPAPTSGPNAN 256
++NNP+RAVEYL SG IP V AGG+ + P + A+ +P+S +
Sbjct: 278 SFNNPDRAVEYLLSGNIPNAV----VREQPAGGRERVDTPGD---EHSASESPSSEDPIS 330
Query: 257 PLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQQ 302
L PQ FQ +R +VQANP++L Q
Sbjct: 331 ALASLPQ----------------------FQQMRALVQANPELLPQ 354
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 142/305 (46%), Gaps = 42/305 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++KK I +G++ P Q+ LI+ G +L D +
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKKKIFEERGAEYLPEKQK-LIYAGVILVDDRKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVMLT+ SS +ST ++ A+ +P+ P PT
Sbjct: 60 SYKVDEKKFIVVMLTRDAAPSSASSTTASTSEKVAE----------KPSEKKTNPEPTPT 109
Query: 121 PPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P SAP PA+ A + A +P +P + +D +A S+L+ G T
Sbjct: 110 APSPAAVSAPVPASVASSGASGTTSDSPNTETTVSPTAPSTD-QTRAESSLLMGEEYNRT 168
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
V +++MG + RE V RA+ A++NNPERAVEYL +GIP +
Sbjct: 169 VSSMVEMG---YPREQVERAMAASFNNPERAVEYLINGIPAE------------------ 207
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ Q P S PN D P+ S A +FLR+ QF +R+++
Sbjct: 208 --EDQLFNDTDPTSQSNPNPRVADASSINAPSGRSTADP--FEFLRSQPQFLQMRSLIYQ 263
Query: 296 NPQIL 300
NPQ+L
Sbjct: 264 NPQLL 268
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 135/307 (43%), Gaps = 48/307 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T++
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVD 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS---QTPAP 117
V + F+VVMLT+ SS+ NQ S ST + S +
Sbjct: 60 SYNVDDKKFIVVMLTRDSSSSN---------PNQLSVKESDKLISTDDSKDSMPGEEANH 110
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
+ +P E + P+ P A A + S +A SNL+ G TV
Sbjct: 111 SNSPCTKNTEESVLPSETTPLSTDNLIGDLAQASLQS------RAESNLLMGEEYNQTVL 164
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+++MG + RE V RA+ A+YNNPERAVEYL +GIPE+ + ++ NP
Sbjct: 165 SMVEMG---YPREEVERAMAASYNNPERAVEYLINGIPEEEGTID----NGVNESTNPSV 217
Query: 238 QTQAQQPAAPAPTSGP---NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
Q + + P N++P +FLR QF +R+++
Sbjct: 218 IASGPQTVSASSVERPAESNSDP-------------------FEFLRRQPQFLQMRSLIY 258
Query: 295 ANPQILQ 301
NP +L
Sbjct: 259 QNPHLLH 265
>gi|357504019|ref|XP_003622298.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497313|gb|AES78516.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 416
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 290 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 349
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 350 DNEVSEDGFLVVMLSKIWISN 370
>gi|357504017|ref|XP_003622297.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497312|gb|AES78515.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 697
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 571 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 630
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 631 DNEVSEDGFLVVMLSKIWISN 651
>gi|357504021|ref|XP_003622299.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497314|gb|AES78517.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 398
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 272 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 331
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 332 DNEVSEDGFLVVMLSKIWISN 352
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 135/301 (44%), Gaps = 80/301 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+ L +F I ++P V D+K+ IE +G D Y Q LI++GK+LKD L
Sbjct: 1 MKITVRNLYQKNFIIHIEPSKTVKDLKQQIEAEKGKD-YRWDYQRLIYRGKILKDEAPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQA-QTTSSAPPTSTQPTTTSQTPAPTV 119
E + E+ F+V+M++K SG + V+ + N A Q +++ + P
Sbjct: 60 EYNIDEDKFIVIMVSK---PDSGTTEVANSGDNSATQPSATPAAAPAPAAPAAPAPVAPA 116
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ S ESA L+ G E VQ I
Sbjct: 117 SNLSSEAESA------------------------------------LLMGEEYENMVQNI 140
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMG + R+ V +ALRA+YNNP+RAVEYL +GIP A G+
Sbjct: 141 VDMG---YPRDQVEQALRASYNNPDRAVEYLINGIP------------AMGE-------- 177
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q AAP+ + G+ S+A + L FLR+ QFQ ++ +VQ NPQ+
Sbjct: 178 --DQEAAPSMS-------------GIDERQSDA-SDPLAFLRSQPQFQQMKQVVQQNPQL 221
Query: 300 L 300
L
Sbjct: 222 L 222
>gi|124359456|gb|ABN05900.1| Ubiquitin [Medicago truncatula]
Length = 674
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 548 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 607
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 608 DNEVSEDGFLVVMLSKIWISN 628
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 141/307 (45%), Gaps = 68/307 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K L+ F++E+ + V +K+ ++ +GS+ Y A Q LI+ GK+L D T +
Sbjct: 1 MLITFKNLQQHTFKLEIDSDQTVRQLKEKLQAEKGSE-YLAENQKLIYAGKILSDDTKIS 59
Query: 61 ENKVAENSFVVVMLTKS---KVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + FVVVM++K+ ++S +T SAA A T S P ST P
Sbjct: 60 DCNIDSKKFVVVMVSKATGAVTATSATNTASAASATSVSDTKSTPSVST----------P 109
Query: 118 TV-APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
+ A S+P + P P+P A P ++ASN E T+
Sbjct: 110 MIPADNSSIPIAQPRVVEQLPSPVETRASEP-------------ESASN----DETERTI 152
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA---RASAGGQAG 233
Q I+DMG ++R V ALRA++NNP+RAVEYL +GIP++ P R+ +G
Sbjct: 153 QNIMDMG---YERPQVEEALRASFNNPDRAVEYLLTGIPQELLTDPTISPNRSVLSEDSG 209
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+ +Q P + P L FLRN FQ +RT+V
Sbjct: 210 DLSGSSQ-------VPATDP-----------------------LAFLRNQPTFQQMRTVV 239
Query: 294 QANPQIL 300
Q NP++L
Sbjct: 240 QQNPELL 246
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 150/323 (46%), Gaps = 47/323 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ + + P + Q LI+ G++L D L+
Sbjct: 1 MQVTLKTLQPQSFKIDIDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALK 60
Query: 61 ENKVAENSFVV--VMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E FVV VM+TK K S+ A+T +APA+ TSS T Q T A
Sbjct: 61 EYKIDEKIFVVVMVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVLALA 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYG 160
T P P S + PAPA A A PA PV SS S+++
Sbjct: 121 TTFTPAFITPVSVTVSSEPAPASATKQKKAAEKPAETPVATRLTSTDCTLXDSSWSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQ 217
A S LV G E V +I MG ++ E VI A RA++ N +RAVE L GIP Q
Sbjct: 181 DATSALVTGQPYENMVTEITPMG---YEXEQVIAAPRASFKNLDRAVECLVMGIPGVKXQ 237
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V P AS G + A A A +SG + L
Sbjct: 238 VVVDPHQAASTGVPQSSTLAAVAATTTATTTTSSGXHP---------------------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQIL 300
+FL N QFQ +R ++Q N +L
Sbjct: 277 EFLWNQPQFQQMRQIIQQNTSLL 299
>gi|327493261|gb|AEA86337.1| putative DNA repair protein [Solanum nigrum]
Length = 166
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 212 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
SGIPE VPPVA + QAGN PAQ Q AP P GPNA+PL+LFPQGLP++GSN
Sbjct: 1 SGIPEAAEVPPVAGSPPSVQAGNQPAQPQPAAQPAPIPAGGPNADPLNLFPQGLPSVGSN 60
Query: 272 -AGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
AGA TLDFLRNSQQFQALR MVQANPQILQ
Sbjct: 61 TAGANTLDFLRNSQQFQALRAMVQANPQILQ 91
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 302
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 113/214 (52%), Gaps = 21/214 (9%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +
Sbjct: 3 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 62
Query: 82 SGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAP 139
+ A T + PA TSS P Q + AP P P S + PAPA
Sbjct: 63 TPAPTTTQQSNPATTTTVTSSTAPAVAQAPAPTPALAPASTPASITPVSTTVSSEPAPAS 122
Query: 140 A---PAPAPAPAPAPVSSV-------------SDVYGQAASNLVAGSNLEATVQQILDMG 183
A PA PA PV++ S+++ A S LV G + E V +I+ MG
Sbjct: 123 ATKQEKPAEKPADTPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 182
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
++RE VI ALRA++NNP+RAVEYL I +
Sbjct: 183 ---YEREQVIAALRASFNNPDRAVEYLLMQISQH 213
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 129/298 (43%), Gaps = 67/298 (22%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ V+ G F IE+ V D+K+ IE +G +PA Q LI+ GK+L D L E
Sbjct: 18 LIVEDYAGQTFTIEIDSSQTVKDLKEKIEMQKG---FPAEHQKLIYAGKILADEQPLTEY 74
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E F+VVM+TK K +GA+ P T+ + A
Sbjct: 75 NIDEKKFIVVMVTKPK---AGAT----------------------PKTSEEQRAEGDKKE 109
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S + P++ A + ++ + GQA S L+ G + V I+DM
Sbjct: 110 ESTSSATTQPSSNLNIQDTTRAASNVQEQPAAAAPAAGQAESALLMGEDYNTMVNNIMDM 169
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP +
Sbjct: 170 G---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDP---------PEDPPEAQEQL 217
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q + P L FLR QFQ +R ++Q NPQ+L
Sbjct: 218 QDQSQDP---------------------------LAFLRLQPQFQQMRQVIQQNPQLL 248
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 132/308 (42%), Gaps = 88/308 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVV+M+ + K V A PA S+ P++ Q +Q T
Sbjct: 61 EVMIDPSKFVVIMIARKK-------PVGATPAE-----STPQPSNLQIPAAAQV---TTV 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV +++ PAAP + P E T Q I+
Sbjct: 106 TPASVTDNS--PAAPQNSDGLTPEQ---------------------------EETAQAIV 136
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG Q
Sbjct: 137 AMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH------QES 179
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN---- 296
A+ QGL LDFLR QF+ LR +VQ+N
Sbjct: 180 AEHEEGER-------------GQGL----------GLDFLRQLPQFEQLRELVQSNPALL 216
Query: 297 PQILQQWA 304
PQI+QQ A
Sbjct: 217 PQIIQQIA 224
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 138/309 (44%), Gaps = 56/309 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ +D V K+ + + + DV SQ ++ GKVL D +L
Sbjct: 1 MQITFKDFKKQKLTIDVEVDDTVLKTKETVASQKSCDV---SQLKFVYSGKVLADDQSLG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K V A PPT+ +S++
Sbjct: 58 SYKIKEGDSIIYMISKAK-----KPVVPVAE----------PPTAATTGDSSES------ 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+A P AP P+ A APVS +A S GS EAT+Q I+
Sbjct: 97 -------AASEPVAPTPS-------ATTVAPVSE------EAGSAFAQGSEREATIQNIM 136
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
+MG +DR+ V +ALRAA+NNP RAVEYL +GIPE Q V P A A+
Sbjct: 137 EMG---YDRDQVEQALRAAFNNPHRAVEYLLTGIPESLQQPVEPPTAVEEDVDATPVAAE 193
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----LDFLRNSQQFQALRTMVQ 294
T TS N N LF ++AG G + L ++ Q Q LR +Q
Sbjct: 194 TTQDDKDHDHDTSDRNVN---LFEAAAAANNASAGEGDASDPVGELDDAAQLQLLREAIQ 250
Query: 295 ANPQILQQW 303
NP+++ +
Sbjct: 251 TNPELIHEL 259
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 140/309 (45%), Gaps = 71/309 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F +E +P + VSDVK+ I +G + ASQQ LI+ GK+L+D TLE
Sbjct: 1 MKLTFKDLKQQKFVLEAEPTELVSDVKEKIFKEKG---WEASQQKLIYSGKILQDANTLE 57
Query: 61 ENKVAENSFVVVMLT--KSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M+T K+ ++S A + PA + T + P ++TS T
Sbjct: 58 SYHIEEKGFIVCMITKPKAAPAASSAPKAPSTPAPASAATPAPPAAPAHSSSTSNTAV-- 115
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
PA P+PA A PAP P+ + L G+ A + +
Sbjct: 116 -------------PATPSPAGASIPAPQATPS----------NETTGLAMGAERSAQIAE 152
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPP 236
+ MG ++R + A+RAA+ N ERA+EYL +GIPE+ P A A QA +PP
Sbjct: 153 MESMG---FERSQIEAAMRAAFYNSERAIEYLLNGIPERLLQEQQPTPAAPAAVQASSPP 209
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--------------------- 275
A +G +P+DLF Q N G+ GA
Sbjct: 210 A-------------AGGEDDPVDLF-QAAANAGNRGGAARGRPGVDPLGGAGAGAAAGGL 255
Query: 276 -TLDFLRNS 283
LDFLRN+
Sbjct: 256 GNLDFLRNN 264
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 130/302 (43%), Gaps = 79/302 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI + V+DVK IE + A LIH GKVLKD ++
Sbjct: 1 MKLLVKTLKGEKFEIHAEESQTVADVKGIIEATKSE--LSAGTLKLIHSGKVLKDEDSIA 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ EN F+VVM+TK+K P + +P T TP P
Sbjct: 59 SAGIKENDFLVVMVTKAK-----------------------KPVAAKPAATP-TPVPAAT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PP AA A PAP A PA + DV +A +NL + EA V+
Sbjct: 95 P-------GPPVAAAASIETPAPTAAATPAAPTRADDVSAEAVANLTSMGFPEAEVK--- 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
LRAA+ NP+ AVE+L +GIPE VA A+A A N A T
Sbjct: 145 -------------HCLRAAHGNPDIAVEFLTNGIPE-----GVAEAAA---AMNTSAVTS 183
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ + SG PL LRN QF LR +VQ+NPQ+L
Sbjct: 184 PSASSESSSGSG---QPLQA-------------------LRNHPQFNDLRRLVQSNPQML 221
Query: 301 QQ 302
QQ
Sbjct: 222 QQ 223
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 113/218 (51%), Gaps = 27/218 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++ +P D V D+K I Q +P QQ +I+ GK+L D T+E
Sbjct: 1 MKLTFKTLQQKQFTLDAEPSDTVLDLKHRISQDQD---FPVEQQKIIYSGKILSDTQTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT-TTSQTPAPTV 119
K+ E F+VVM++K K AAPA A T+ +A P +P +TS + P+
Sbjct: 58 ACKIKEKDFLVVMVSKPK----------AAPA--ATTSKTATPEPAKPVASTSSSAVPSE 105
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P A A A ++ + +G S G+ L+ V+ +
Sbjct: 106 P-------AVVPAPAEPVAAPAPVPAATEQPAAAAAAPAWGD-QSAFFTGAALQGAVENM 157
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
++MG ++R V+RAL+AAYNNP+RAVEYL SGIP+
Sbjct: 158 MEMG---FERAQVMRALKAAYNNPDRAVEYLMSGIPDH 192
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 116/238 (48%), Gaps = 33/238 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ D VS K+ + + D P SQ L++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQTIPIDVELNDSVSSAKEKL--AKEKDCTP-SQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E + ++ M++K+K + + A S A A + S+ T +P ++ PTV
Sbjct: 58 ECKLKEGASIIFMISKAKETPTPAPVSSTPAAEAAASASTGDSTKVEPAGST----PTV- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PAAP A AP S S GS E T+Q I+
Sbjct: 113 -----------PAAPTSGAATNIEGESAPTETSE---------STFALGSERETTIQNIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPP 236
+MG ++R V ALRAA+NNP RAVEYL SGIPE P PVA A+ G +G P
Sbjct: 153 EMG---YERPQVEAALRAAFNNPHRAVEYLISGIPESLQRPSAPVASAATGSGSGAAP 207
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 108/216 (50%), Gaps = 26/216 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K K IEV+ D VS K + Q D +SQ L++ GKVL+D TLE
Sbjct: 1 MKIIFKDFKKQTIPIEVELTDTVSSAKDKL--AQEKDCV-SSQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E + ++ M++K+K T + P SS P +T+ T ++ T T
Sbjct: 58 ECKLKEGASIIFMISKAK------ETPTPVPG------SSVP--ATEATASASTGDSTKV 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + P APAPA A A A SS + S GS E T+Q I+
Sbjct: 104 EP-----AGSTPTAPAPASETATNAEGATASTSSTGPAE-TSESTFALGSERETTIQNIM 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+MG ++R V ALRAA+NNP RAVEYL SGIPE
Sbjct: 158 EMG---YERPQVEAALRAAFNNPHRAVEYLISGIPE 190
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 112/216 (51%), Gaps = 25/216 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + +SDVK+ I +G +V SQQ LI+ GK+L+D T+E
Sbjct: 45 MKLTFKDLKQQKFVIEAEPSELISDVKEKITKEKGWEV---SQQKLIYSGKILQDANTVE 101
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M+TK K +++ AS S AP P+T + A +
Sbjct: 102 SYKIEEKGFIVCMITKPKPAAATASVASKAP----------------PSTPAAPVAASTP 145
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P A PA PA A A +SS G A S L G++ A + Q+
Sbjct: 146 APPPAPAQASAPAQAVPATPSPAGSGAAAAAISSTP---GGATSGLSMGTDRAAQIAQME 202
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+MG ++R + A+RAA+ N ERA+EYL +GIPE
Sbjct: 203 NMG---FERTQIDAAMRAAFYNSERAIEYLINGIPE 235
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 39/247 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G + +P + Q LI+ GK+L D
Sbjct: 1 MQITLKTLQQQTFKIDIDSEETVKALKEKIELEKGKEAFPVAGQKLIYAGKILND----- 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ A + LT + ++ A + PA T S P T+T P +T +P
Sbjct: 56 DTATAAPAPASPPLTYTPIARQNAPVLPTVPAPAVPT--SEPTTTTAPKEEEKTDSP--- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE+ P + P+ + P+ ++ A S LV G + E V +I+
Sbjct: 111 -----PETMSPSSTECSVPSDSSRPS-----------LFVDATSALVTGQSYENMVTEIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE VI ALRA++NNP+RAVEYL GIP GQA P QT
Sbjct: 155 SMG---YEREQVIAALRASFNNPDRAVEYLLVGIP----------GDREGQAVADPPQTL 201
Query: 241 AQQPAAP 247
A P P
Sbjct: 202 ASTPTQP 208
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 139/323 (43%), Gaps = 57/323 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K IE++P + V K+ + V+G +V Q ++ GKVL+D T+E
Sbjct: 1 MQVIFKDFKKEKIPIELEPTETVLQAKEKLAQVKGVEV---KQLKFVYSGKVLQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K ++ PT P ++ TPAP
Sbjct: 58 STKIKADDQVIFMISK---------------------VAAKKPT---PAASTPTPAPAAQ 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P Q +SAP + PAPAP+ A P P AS GS E + I
Sbjct: 94 PTQPTAQSAPVQPSTRTVPAPAPSSQSAQPTPSQQPEQAGDFDASTFATGSAREKAIANI 153
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI-------------PEQTAVPPVARA 226
++MG ++R V +ALRAA+NNP+RAVEYL +GI TAV
Sbjct: 154 MEMG---YERPQVEQALRAAFNNPDRAVEYLLTGIPEQFQQQAQQSQPQPPTAVEESGEQ 210
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPT-SGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ- 284
+ G G A QP+AP+ T A DLF G N G+G+ +
Sbjct: 211 TEGSNTG-----ATATQPSAPSGTEEHSTAESGDLFAAAAAAAGGNPGSGSSPGASHRTG 265
Query: 285 ------QFQALRTMVQANPQILQ 301
+R +V+ NP++L+
Sbjct: 266 GAPSGGGLDQIREIVRTNPEMLE 288
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 27/216 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P D ++ VK+ + +G D ASQQ LI+ GKVL D T+E
Sbjct: 1 MKLSFRDLKQQKFTIEAEPTDTIAQVKEKVAAEKGWD---ASQQKLIYSGKVLADANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M++K K ++S S A + T ++
Sbjct: 58 SYKIEEKGFIVCMISKPKAAASKPKEPSTPAATSSSTPAAPAAPPASAPAA--------- 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P+ P PA + AP+ +D S + G+ E+T++++
Sbjct: 109 -------PSEQPSTPTPAQSATAAPSTDTTGAGGFND-----PSAFLMGNRNESTIREME 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG G R + RALRAAY NP+RA+EYL SGIPE
Sbjct: 157 SMGFG---RPEIERALRAAYFNPDRAIEYLLSGIPE 189
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 95/190 (50%), Gaps = 39/190 (20%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAS 85
+K+ IE +G D YPA Q LI+ GK+L D T L E K+ E F+VVM+TK K+
Sbjct: 4 LKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLSEYKIDEKKFIVVMVTKPKL------ 56
Query: 86 TVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAP 145
PA A ++ S P T QT T P
Sbjct: 57 ----PPATHAGSSDSTPTPGTGDGGEKQTSDTTSNEP----------------------- 89
Query: 146 APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPER 205
PA V+S + +GQA S L+ G +++ I+DMG + +E V RALRA++NNP+R
Sbjct: 90 -PASENVNSGAS-FGQAESALLMGDEYNQSLRNIMDMG---YPKEQVERALRASFNNPDR 144
Query: 206 AVEYLYSGIP 215
AVEYL +GIP
Sbjct: 145 AVEYLLNGIP 154
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 35/219 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K + S ++ S+ A + + S
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPSASAASSSQTPAAAPSAPAPVTPS--------------- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPA-PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP A A + PA P+PA + ++ +D S L+ G+ + + Q+
Sbjct: 103 --------APSRANAAASETPATPSPAGGASSGATFND-----PSALLMGNQGQEAITQM 149
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
L MG + R + RA+RAAY NP+RA+EYL +GIPE++
Sbjct: 150 LAMG---FSRGDIDRAMRAAYFNPDRAIEYLLNGIPEES 185
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 138/302 (45%), Gaps = 41/302 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
V E F+VVMLT+ SSS + + +++ +T + + + + S +P T
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNPNQLGVKESDKLTSTDNLKDSMPREESNHSNSPPVTR 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+S+ S P + A A + S +A SNL+ G TV +
Sbjct: 119 NSEESILLSETTPISTDNLIGEL-----AQASLQS------RAESNLLMGDEYNQTVLSM 167
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 168 VEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGTID----NDVNESTNPNGPQ 220
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+ P S N++P +FLR+ QF +R+++ NP +
Sbjct: 221 TGSASSVERP-SESNSDP-------------------FEFLRSQPQFLQMRSLIYQNPHL 260
Query: 300 LQ 301
L
Sbjct: 261 LH 262
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 133/300 (44%), Gaps = 56/300 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+T++ T EIEV+ V +K+ IE AS+Q LI G++L D T++
Sbjct: 1 MKIKVRTVQNTEHEIEVEDNFTVLQIKQLIEAKNSQ--MTASRQKLIFAGRILGDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+++K GA ++ +Q + ++ T P TT+
Sbjct: 59 DIGIKEGERLVVLVSK------GAIQQKSSEISQTKNIGNSTSAQTTPVTTN-------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + Y +AS L+ G+ LE T+ I+
Sbjct: 105 --------------------------TGVIPNNCDQNTYESSASALITGTELETTINNIV 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R VI A+RAA+NNP+RAVEYL SGIP P GQ +
Sbjct: 139 NMG---FERNQVIAAMRAAFNNPDRAVEYLTSGIP-----LPGIIIQGQGQGQGQSEVSL 190
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+Q P + N + N + G LD LR + FQ LR +VQ +P+IL
Sbjct: 191 SQAATTPINPEMSDINQIS------TNASGDTVTGALDSLRTNPIFQQLRMVVQQDPRIL 244
>gi|240256296|ref|NP_197113.4| uncharacterized protein [Arabidopsis thaliana]
gi|332004862|gb|AED92245.1| uncharacterized protein [Arabidopsis thaliana]
Length = 171
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
NKV + S + +++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 29/222 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTLK F+IE+ E+ V +K+ I +G+D +P + Q LI+ GK+L D +L+
Sbjct: 1 MLITIKTLKQNIFKIEIDEEEPVKVLKEKIAKEKGNDNFPVAGQKLIYAGKILDDSKSLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ + F+V M+TK K S + +A T++ QPT P VA
Sbjct: 61 EYKIEDGKFIVAMVTKPK--SVSPPAPTPPEPTEAAVTTTTSTQEEQPTN-----QPAVA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + +PA A + +P VS QA S LV G V I+
Sbjct: 114 ------------STTSSSPAEEQASSASPLNVS-------QAESTLVTGEAYNELVTSIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 222
MG ++RE V+ AL A++ NP+RAVEYL SG PP
Sbjct: 155 AMG---FERERVVAALNASFCNPDRAVEYLMSGTTNVGTAPP 193
>gi|9755819|emb|CAC01850.1| putative protein [Arabidopsis thaliana]
Length = 142
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
NKV + S + +++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 24/216 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ + D V+D+KK I+ QG + Q LI+ GK+L D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQDNQG---HTIESQKLIYSGKILPDSKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K V+ PA A T++S TS+ + PAP
Sbjct: 58 SCEIKEKDFLVLMVSKPK-------NVTNLPA--ASTSTSIAATSSPAPVPAPAPAPQPV 108
Query: 121 PPQSVPESAPPPAAPAPAP---APAPA-PAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
SAP PA P PA A P AP + +D +++ + G L++T+
Sbjct: 109 SEPPSVPSAPSPAPQPPNAPILTPAQAQPIAAPTTEQAFND-----SNSFLTGEALQSTI 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
Q +++MG ++R+ V+RALRA++NNP+RAVEYL++
Sbjct: 164 QNMMEMG---FERDQVMRALRASFNNPDRAVEYLFN 196
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 137/303 (45%), Gaps = 68/303 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K + S + ++ ++ P ++ T+ QT +
Sbjct: 59 DVGIKEGERLVVLLSKGASQKAAESQQNKQNNTSNESNTNTDPAASATTSNIQTQSGNSD 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P AS L+ G+ LE T+ I+
Sbjct: 119 PS------------------------------------IDSRASALLTGTELEETITNIV 142
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P
Sbjct: 143 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IP------------------- 176
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGL---PNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+ P AP PT+ N GL + S G L+ LR + FQ LR++VQ +P
Sbjct: 177 -ENPVAPNPTNITPVNSNASLNAGLTPSEELSSEQLPGNLESLRTNPLFQQLRSVVQQDP 235
Query: 298 QIL 300
+IL
Sbjct: 236 RIL 238
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 139/324 (42%), Gaps = 57/324 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V E F VVML K K A TV A P S + A
Sbjct: 58 QIGVKEKDFFVVMLIKPKT----APTVPA-------------PASVPSGAGAAASTSATA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + + A + APA A A A P S D + GSNL+ T+ +I
Sbjct: 101 PTPAAAQPATATPSSTTAPASTDADNASAATPASGTQD------PGFLVGSNLQKTIDEI 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPV-------------- 223
++ G + RE V +A+RAA+NNP+RAVEYL +GIP PPV
Sbjct: 155 VN--GMGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAPPVTLPTNAPSTVNPSA 212
Query: 224 ------ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
A +AG + A Q P + P A P Q +P + L
Sbjct: 213 TTPSAAAAPAAGSRNLFEAAAEHVAQQRQPGEAALPTAEPAQAGAQSIPT------SRAL 266
Query: 278 DFLRNSQQFQALRTMVQANPQILQ 301
+ LRN+ Q LR +VQ NP +LQ
Sbjct: 267 EALRNNPQMIQLRQLVQQNPNLLQ 290
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 139/324 (42%), Gaps = 57/324 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V E F VVML K K A TV A P S + A
Sbjct: 58 QIGVKEKDFFVVMLIKPKT----APTVPA-------------PASVPSGAGAAASTSATA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + + A + APA A A A P S D + GSNL+ T+ +I
Sbjct: 101 PTPAAAQPATATPSSTTAPASTDADNASAATPASGTQD------PGFLVGSNLQKTIDEI 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PV-------------- 223
++ G + RE V +A+RAA+NNP+RAVEYL +GIP P PV
Sbjct: 155 VN--GMGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAAPVTLPTNAPSTVNPSA 212
Query: 224 ------ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
A +AG + A Q P + P A P Q +P + L
Sbjct: 213 TTPSAAAAPAAGSRNLFEAAAEHVAQQRQPGEAALPTAEPAQAGAQSIPT------SRAL 266
Query: 278 DFLRNSQQFQALRTMVQANPQILQ 301
+ LRN+ Q LR +VQ NP +LQ
Sbjct: 267 EALRNNPQMIQLRQLVQQNPNLLQ 290
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 46/317 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKS---------KVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT 110
+ + + EN +VVM+TK+ +S+ ++ ++ + Q SSA ++
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
++++ P + S ++ PA PA A +P+ AP +S + A S L G
Sbjct: 119 SAKSETPGGSGNASG--NSGGPANPAHASSPSSAPDATSEGLSRAA-----AESALFTGP 171
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 230
LE T+ ++ MG + R A+RAA+NNP+RAVEYL +G+ PP A GG
Sbjct: 172 QLEETLTHLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGM------PPEVSAMLGG 222
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
+ A+TQ P + D P G LR+ F +R
Sbjct: 223 DS----AETQEAHGDVPPEEGDAEGDEDDENPLGA--------------LRHHPAFNQIR 264
Query: 291 TMVQANPQILQQWALIV 307
MVQANP +L Q ++
Sbjct: 265 QMVQANPAMLPQVLQLI 281
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 147/310 (47%), Gaps = 32/310 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + EN +VVM+TK+ + +S+ +A+ A + + S T + T
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 120 APPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSVSDVYGQAA-SNLVAGSNLEATVQ 177
+ P + + + PA PA A +P+ AP ++ + AA S L G LE T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPAHASSPSSAPDATSEGLSRAAAESALFTGPQLEETLT 178
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
++ MG + R A+RAA+NNP+RAVEYL +G+ PP A GG + A
Sbjct: 179 HLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGM------PPEVSAMLGGDS----A 225
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+TQ P + D P G LR+ F +R MVQANP
Sbjct: 226 ETQEAHGDVPPEEGDAEGDEDDENPLGA--------------LRHHPAFNQIRQMVQANP 271
Query: 298 QILQQWALIV 307
+L Q ++
Sbjct: 272 AMLPQVLQLI 281
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 124/310 (40%), Gaps = 94/310 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 23 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 82
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVVVM+ + K P A
Sbjct: 83 EVMIDPSKFVVVMIARKK--------------------------------------PIGA 104
Query: 121 PPQSVPE--SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P +S P+ + PA AP P+ + D+ + E T Q
Sbjct: 105 PVESTPQPSNLQIPAGAQVTTAPVSVADSGPSTPQNPDDLTPEQ----------EETAQA 154
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG Q
Sbjct: 155 IVAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH------Q 197
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN-- 296
A+ G A LDFLR QF+ LR +VQ+N
Sbjct: 198 ESAEHEE-----------------------GERAQGLGLDFLRQLPQFEQLRELVQSNPA 234
Query: 297 --PQILQQWA 304
PQI+QQ A
Sbjct: 235 ILPQIIQQIA 244
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+++ +P + V+D+KK IE G +P + Q LI+ G+VL D T+E
Sbjct: 1 MKITVKTLQQKTFQLDAEPSETVADLKKKIEEGHG---HPVATQKLIYSGQVLGDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V ++ + + + A A T+++ + PA ++
Sbjct: 58 SCNIKEKGFLV-LMVAKPKAEPKPAAAATPAAAAAATSAAPSNPPAAAPAAAPAPATSIP 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA A AP P S + + A V G++L+ VQ ++
Sbjct: 117 AAAPPQPPNAPILTPAQA-------APVSTPAQSARAINDENA--FVTGADLQTAVQNMM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+MG ++RE +RALRA+YNNPERAVEYL++GIP
Sbjct: 168 EMG---FEREQAMRALRASYNNPERAVEYLFNGIP 199
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 136/319 (42%), Gaps = 96/319 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPED-----------KVSDVKKNIETVQGSDVYPASQQMLIHQ 49
M + KT+ FEIE+ P K+ +VK I +G YP Q LI+
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTVYFWSNVVLPKIGEVKAKIAEEKGEVEYPIECQKLIYN 60
Query: 50 GKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT 109
GKVL D T+EE + + FVV+M+ + K V A PA S+ P++ Q
Sbjct: 61 GKVLDDAQTVEEVMIDPSKFVVIMIARKK-------PVGATPAE-----STPQPSNLQIP 108
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+Q T P SV +++ PAAP S +SD G
Sbjct: 109 AAAQV---TTVTPASVTDNS--PAAPQN---------------SGISD--GLTPEQ---- 142
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
E T Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + G
Sbjct: 143 ---EETAQAIVAMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------G 188
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
G Q A+ QGL LDFLR QF+ L
Sbjct: 189 GH------QESAEHEEGER-------------GQGL----------GLDFLRQLPQFEQL 219
Query: 290 RTMVQAN----PQILQQWA 304
R +VQ+N PQI+QQ A
Sbjct: 220 RELVQSNPALLPQIIQQIA 238
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 142/302 (47%), Gaps = 66/302 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 22 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 79
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K GAS +A Q +S +
Sbjct: 80 DVGIKEGERLVVLLSK------GASQKAAESQQNKQNNTSNESNT--------------- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P A+ + A + P+ S AS L+ G+ LE T+ I+
Sbjct: 119 -------NTDPAASATTSNIQAQSGNSDPSIDSR--------ASALLTGTELEKTITNIV 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPPAQ 238
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P PVA P
Sbjct: 164 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IPENPVA-----------PNH 205
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
T + A + + DL + LP G L+ LR + FQ LR++VQ +P+
Sbjct: 206 TNITPVNSNASLNAGLTSSEDLSSEQLP--------GNLESLRTNPLFQQLRSVVQQDPR 257
Query: 299 IL 300
IL
Sbjct: 258 IL 259
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 145/329 (44%), Gaps = 70/329 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ +F++EV+ KV +VK+ I +G Y + Q LIH GK+L D +T+E
Sbjct: 1 MKLTFKTLQQDNFQVEVEQTAKVIEVKEAILAAKG---YTVASQKLIHSGKILNDASTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K++E F+VVM++K K ++ A V+ AP A + P + T S P
Sbjct: 58 ELKISEKDFIVVMVSKPKPVAAPAPVVAPAPVTPAVPVTPTVPVAPTATPASAVP----- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV P A VY A SNL +
Sbjct: 113 PADSVDTPVNPETLTTTTALATGA-------------VYENAVSNL-------------M 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ-AGNPPAQT 239
+MG + R+ V A+R A+NNP+RA EYL +GIP+ VAR A + T
Sbjct: 147 EMG---FPRDQVTHAMRTAFNNPDRAAEYLMTGIPD-----SVAREFASTAPVLSDTTTT 198
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNM--------GSNA-GAG---TLDFLRNSQQFQ 287
+ A P + ++LF S+A GAG TL FLRNS QFQ
Sbjct: 199 PSSTAAPATPAAPAATQHINLFEAAAAQAAQSRSGAAASHAPGAGDASTLSFLRNSPQFQ 258
Query: 288 ALRTMV---------------QANPQILQ 301
LR +V Q NP++LQ
Sbjct: 259 QLRQLVHSQPQLLQPLLQQIGQTNPELLQ 287
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 142/302 (47%), Gaps = 66/302 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K GAS +A Q +S +
Sbjct: 59 DVGIKEGERLVVLLSK------GASQKAAESQQNKQNNTSNESNT--------------- 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P A+ + A + P+ S AS L+ G+ LE T+ I+
Sbjct: 98 -------NTDPAASATTSNIQAQSGNSDPSIDSR--------ASALLTGTELEKTITNIV 142
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPPAQ 238
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P PVA P
Sbjct: 143 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IPENPVA-----------PNH 184
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
T + A + + DL + LP G L+ LR + FQ LR++VQ +P+
Sbjct: 185 TNITPVNSNASLNAGLTSSEDLSSEQLP--------GNLESLRTNPLFQQLRSVVQQDPR 236
Query: 299 IL 300
IL
Sbjct: 237 IL 238
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 135/320 (42%), Gaps = 51/320 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I+ PE V ++K I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFAIDFDPEKTVLELKNQIFYERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSS-----------------GAST-VSAAPANQAQTTSSAP 102
KV E F+VVML++ +S G++T + P Q SSA
Sbjct: 60 SYKVDEKKFIVVMLSRDISGTSSNTNADGQRKQPNEQMEGSTTGIDKKPVLQNANASSAE 119
Query: 103 PTSTQPTTTS-QTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
S + S ++ A P PA + +++ S + +
Sbjct: 120 KGIINNNNRSNDVLGVEIERSGSSSQTQISTAPEVPIPATDYSSIDLVGELANAS-LQSR 178
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP
Sbjct: 179 AESNLLMGEEFNRTVASMVEMG---YPRDQVERAMAASFNNPERAVEYLINGIP------ 229
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
Q + P PN GLP + + A +FLR
Sbjct: 230 ------------------QDENLFNPGDEEEPNRVETSHRQGGLP---AESAADPFEFLR 268
Query: 282 NSQQFQALRTMVQANPQILQ 301
+ QF +R+++ NP +L
Sbjct: 269 SQPQFLQMRSLIYQNPHLLH 288
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 33/218 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I + +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIASEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K + S ++ S+ A + + S
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPSASAASSSQTPAAAPSAPAPTTPSAPTR----------- 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A PA+ PA P+PA + ++ +D S L+ G+ + + Q+L
Sbjct: 107 --------ASAPASETPA---TPSPAGGASSGATFND-----PSALLMGNQGQEAITQML 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
MG + R + RA+RAAY NP+RA+EYL +GIPE++
Sbjct: 151 AMG---FSRGDIDRAMRAAYFNPDRAIEYLLNGIPEES 185
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 33/218 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I + +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIASEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K + + ++ T + P+
Sbjct: 58 SYNIEEKGFIVCMVSKP-------------------KAAPSASAASSSQTPAAAPSAPAP 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P A PA+ PA P+PA + ++ +D S L+ G+ + + Q+L
Sbjct: 99 TTPSAPTRANAPASETPA---TPSPAGGASSGATFND-----PSALLMGNQGQEAITQML 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
MG + R + RA+RAAY NP+RA+EYL +GIPE++
Sbjct: 151 AMG---FSRGDIDRAMRAAYFNPDRAIEYLLNGIPEES 185
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 99/228 (43%), Gaps = 45/228 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD----V 56
MKV V+TL+ EI V ED + DVKK IE P +Q LI G +LKD V
Sbjct: 1 MKVKVRTLQNNEEEISVDNEDTILDVKKKIEVAFPE--MPCDKQKLIFSGNILKDESKAV 58
Query: 57 TTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L+EN + V+VM K SS T + ++SSA ++ T
Sbjct: 59 DVLKENDI-----VIVMACKKIFSSKNNQT-------KESSSSSANVLKSKEKT------ 100
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P PA AP A S A S LV G L+ T+
Sbjct: 101 ------------------PLPANDDQKNAAPTAAEEGGQSKNLNNAESALVTGEKLKETI 142
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
I MG ++RE V +A+ A+NNP RA++YL +G P++ V ++
Sbjct: 143 DNICAMG---FEREAVRKAMMVAFNNPNRAIDYLTNGFPDENEVNEIS 187
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 137/306 (44%), Gaps = 48/306 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVK-KNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M V ++ K + ++V+P D V +K KN E G D Y Q +I+ GK+L + T++
Sbjct: 1 MLVKLRDTKRQQWTVDVEPSDTVETLKTKNAE---GKD-YGVGDQKMIYSGKILANTTSI 56
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E++F++ M++K KV ++ A+ +AAP A + P T+ P
Sbjct: 57 ESLNLKEDAFIICMISKPKVKAAAAAPAAAAPVAAAPAAAEPAVAPVTPATSRSVATP-- 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP + P A A S+ D+ ++ A + + + +
Sbjct: 115 --------GAPTNSGNVVGNTETPTTGGADA--STTGDIGAESGPAASATAAVTTAINNM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMG + R+ V A+RAAYNNPERAVEYL +GIP+
Sbjct: 165 VDMG---YPRDQVEAAMRAAYNNPERAVEYLLTGIPDHVI-------------------- 201
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG----TLDFLRNSQQFQALRTMVQA 295
++ P S + DLF + + G A LDFLR++ QF +R MVQ
Sbjct: 202 -GEEADDDVPESNTDT---DLFAEAVAQQGQGASVAPNTSALDFLRDNPQFIEMRRMVQQ 257
Query: 296 NPQILQ 301
P +L+
Sbjct: 258 QPHLLE 263
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis subvermispora
B]
Length = 363
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 115/215 (53%), Gaps = 19/215 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F I+ + D V+D+K+ I QG + Q +I+ GK+L D T+E
Sbjct: 1 MKLTVKTLQQKVFHIDAEGSDTVADIKQKISESQG---HAVESQKIIYSGKILPDTKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K +++ A++ S + + P T P+ P
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAAPAASSSTSTTTATPAPAVPSPAPTAPSPAPAATTPAAV 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP A P AP PA ++ D+ S+ V G L+ ++Q ++
Sbjct: 118 --------QPPNAPLLAPAPATPVAAPQPAQERALGDL-----SSFVTGDALQQSIQNMI 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+MG ++R+ V+RALRA++NNP+RAVEYL++GIP
Sbjct: 165 EMG---FERDQVMRALRASFNNPDRAVEYLFNGIP 196
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 140/334 (41%), Gaps = 73/334 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKDVTT 58
MK+ +KTL FEIE+ K + ++ ++G A L+ H+G+VL+D T
Sbjct: 1 MKIHLKTLTAQKFEIEISDPSKTTILQCKKLAIEGQPQLGAETDFLVFVHKGQVLEDEKT 60
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ E ++ E+ FVVVM K+K + + + APAN T++ P T
Sbjct: 61 VSEAEITEDGFVVVMSKKTKKPAEKTTAAAPAPANPPATSAPDVAAPVAPAAAVAMAPQT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A PVSS V G + LE +++
Sbjct: 121 TA----------------------------EVPVSSPGLVVG---------AELEKAIEE 143
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG + R+ + ALRAA+NNP+RAVEYL +GIPE V A +A A
Sbjct: 144 LQAMG---FPRDQCVAALRAAFNNPDRAVEYLLNGIPEGMMVSAPAANAAAAAPPPAAAP 200
Query: 239 TQAQQPAAPAPTS-------------------GPNANPLDLFPQGLP-NM---------- 268
A T+ + PL+LFPQG+P N+
Sbjct: 201 GADAAAANAVRTAEGATASAPGVGAGGAPPAAADGSAPLNLFPQGIPANLAAAGAGGAEE 260
Query: 269 -GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
TL FLR++ QFQA+R MVQ NP ILQ
Sbjct: 261 EAQEGEVNTLAFLRDNPQFQAIRAMVQGNPSILQ 294
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 108/216 (50%), Gaps = 30/216 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +SSG T+S AP TP+ V
Sbjct: 58 SYNIEEKGFIVCMVSKPKATSSG-------------TSSQAP----------STPSRAVT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P + P AA P+ P+PA A S S L++G+ EA V Q+
Sbjct: 95 STPAAPPAPAPSAASTTPAVPS-TPSPAAAGTSQAQGSAFNDPSALLSGTQSEAVVAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R V RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 154 AMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPE 186
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 104/216 (48%), Gaps = 46/216 (21%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
+V +KTL+ F++ V+ D ++ +K+ IE QG + + Q LI GK+L D T+E
Sbjct: 3 EVTIKTLQQKVFKVVVEDSDTIATLKQKIEADQG---FAVNTQKLIFSGKILADDRTIES 59
Query: 62 NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAP 121
++ E F+VVM++K K QP T + A P
Sbjct: 60 LQIKEKDFLVVMVSKPK---------------------------PQPATPKKDEAKVEQP 92
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILD 181
Q +S P P PA + P+ Q +NL GS LE V +++
Sbjct: 93 AQ---KSEQPEQPEQPQQTQQPASSSTPS----------QPGNNLAMGSELETAVSNMVE 139
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
MG +DR V++A+RA++NNPERAVEYL +GIP+
Sbjct: 140 MG---FDRAQVMKAMRASFNNPERAVEYLMTGIPQH 172
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 28/217 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P +K+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K ++ A+ S++ A + P T + P
Sbjct: 58 SYSIEEKGFIVCMVSKPKAAAPSAAAASSSQTPAAAPPAPTPATPSAPARV--------- 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+APP PA P+PA + + ++ +D S L+ G+ + + Q+L
Sbjct: 109 -------NAPPLQTPA-TPSPAGGASSGASSGATFND-----PSALLMGNQGQEAITQML 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
MG + R + RA+RAAY NP+RA+EYL +GIP++
Sbjct: 156 AMG---FSRGDIDRAMRAAYFNPDRAIEYLLNGIPDE 189
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 137/301 (45%), Gaps = 50/301 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P D +S VK+ I +G D A+ Q LI+ GK+L+D T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPTDTISQVKEKINKEKGWD---AAAQKLIYSGKILQDDKTVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E FVV M +S P + ++++ +++ P TPA +
Sbjct: 58 DYKIEEKGFVVCM-------------ISNKPKAASSSSAAGSSSASTPVKAPSTPAQSSV 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP SAP A + + + A P P +V G+ I+
Sbjct: 105 PPTP---SAPAQAVTGSSTSTSAAVPETPTPAGAV-------------GTTFNDPEDAIV 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS----AGGQAGNPP 236
+M G ++R + RA+RAA+ NP+RAV+YL +GIPE A++S A A +
Sbjct: 149 NMMGMGFERSEIERAMRAAFFNPDRAVDYLLNGIPEHLTQERPAQSSTTRPAAQSAQSAA 208
Query: 237 AQTQAQQPAAPAPTSGPNANP--LDLFPQ---------GLPNMGSNAGA---GTLDFLRN 282
A PA SG A P ++LF G + G + GA G LDFLRN
Sbjct: 209 RPAAATAPATGGSASGEGAEPENINLFEAAAAAASQRGGAHSQGRSGGAASLGNLDFLRN 268
Query: 283 S 283
+
Sbjct: 269 N 269
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 129/308 (41%), Gaps = 79/308 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KT+ F +EV P + ++K I +G YP Q LI+ GK+L D T+E
Sbjct: 1 MKITFKTISQVTFHVEVDPSITIGELKAKIAEQEGQLEYPVDGQKLIYNGKILDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ F+VVM+ + K A+ + PA A +A ST+ T
Sbjct: 61 ELKIDAAKFIVVMVARKKAPPPAANAPESTPATPAVEEGAASVPSTEAVT---------- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+AP A + A A P E TVQ I+
Sbjct: 111 -------AAPTGTAQPAPQQASAAAPDALTP-------------------EQEETVQAIV 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ VIRALRAA+ N +RAVEYL + IP++ + GQ A+
Sbjct: 145 AMG---YPRDRVIRALRAAFFNGDRAVEYLCTEIPDEEEL--------AGQHDEGEAEES 193
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN---- 296
A + +A QG L+FLR QF+ LR +VQ+N
Sbjct: 194 AGEESA----------------QG------------LEFLRQLPQFEQLRELVQSNPAIL 225
Query: 297 PQILQQWA 304
PQI+QQ A
Sbjct: 226 PQIIQQIA 233
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like, partial
[Oryctolagus cuniculus]
Length = 365
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 148/333 (44%), Gaps = 80/333 (24%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTKSKVSSSGASTVSAAPANQAQTTS------------------SAPPTSTQ----PTT 110
++ + + +++ A + A A Q+ +AP TST+ P T
Sbjct: 73 LVARPEAATTAAPATATATATAGQSHPATAALAGAGAPARGPALPAAPATSTRAKSAPAT 132
Query: 111 TSQTPAPTVAPPQSVP------------------ESAPPPAAPAPAPAPAPAPAPAPAPV 152
+++ + + S + A PP AP+P P A A P+
Sbjct: 133 STRAKSAPASVSASSTASAQPAPAGAPASPQAAGQQAGPPGAPSPTPDDAIA---GPSSR 189
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+ S+ QAA L+ E V +I+ MG ++RE V+ ALRA++NNP RAVEYL
Sbjct: 190 AQPSE---QAARALLTRPASEQMVAEIVSMG---YEREHVLAALRASFNNPHRAVEYLLM 243
Query: 213 GIPEQTAV-----PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 267
G+P A PP A +S G++ A A A TSG +PLD+
Sbjct: 244 GLPGDRASAAEVEPPQAGSSGAGRSSAVVAD-------AGATTSGSGGHPLDV------- 289
Query: 268 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
L N+ +FQ LR ++Q P +L
Sbjct: 290 ------------LWNAPEFQLLRQILQYFPSLL 310
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 127/313 (40%), Gaps = 58/313 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV D V K+ + + + +V SQ ++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQKIPIEVDLSDTVLATKEKLASEKDCEV---SQLKFVYSGKVLQDEKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K +S + PA + TS+ +T+ T S TPA
Sbjct: 58 SFKIKEGDSIIFMISKAKKASP-----APGPAKAEEKTSTDASATTESTNASSTPAA--- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A+ A P A A G + EAT+Q I+
Sbjct: 110 ------------ASGASTNQQGSEPGSAFAQ-----------------GDDREATIQNIM 140
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
+MG ++R + ALRAA+NNP RAVEYL +GIPE Q A G N
Sbjct: 141 EMG---YERPQIEEALRAAFNNPHRAVEYLLTGIPESLQRHADQSTSAPIGESTTNTTND 197
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----------LDFLRNSQQFQA 288
+ + G N LF G T D L Q +
Sbjct: 198 HEEEHEHDHEGEEGQGEN---LFEAAAAAAAQGEGGNTTSGAGGAEAGADDLGEDNQMRL 254
Query: 289 LRTMVQANPQILQ 301
LRT +Q NP+++Q
Sbjct: 255 LRTALQTNPELIQ 267
>gi|72390575|ref|XP_845582.1| UV excision repair RAD23 protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358793|gb|AAX79246.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei]
gi|70802117|gb|AAZ12023.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328991|emb|CBH11969.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 356
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 116/247 (46%), Gaps = 44/247 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K++ G E EV P+ KV D+KK +E S+ P S + L + +VL+D T+E
Sbjct: 1 MRIILKSVLGKKREHEVSPDTKVEDIKKFLE----SEYTPQSLR-LCYNNRVLEDPMTME 55
Query: 61 ENKVAENSFVVVMLTKSKV----SSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
+ + E++ +V + K V S SG +APA P
Sbjct: 56 QLGIGEDTVIVYVGKKQSVQQLASKSGGCASPSAPAE-------------GPAKGELNEN 102
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPA-PAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P VA SVP P P+ A APA P+ PAPA + SV A
Sbjct: 103 PGVAGASSVPVDVPAPSPSAQAPATTQQPSGPAPASLRSVD----------------PAL 146
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGGQA 232
+ I+ MG DRE V ALRAAY N +RAVE+L +GIP +Q +ASA G+A
Sbjct: 147 IDSIVAMGFN--DREQVSLALRAAYMNADRAVEFLCTGIPPHVQQQLAEADLQASAMGRA 204
Query: 233 GNPPAQT 239
P A T
Sbjct: 205 AVPSAGT 211
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS 421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 133/288 (46%), Gaps = 27/288 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K ++++P + + DVK + + + SQ +I+ GKVL+D T+E
Sbjct: 2 VNVIFKDFKKEKIPLDLEPSNTILDVKSQLAQAKACE---ESQIKIIYSGKVLQDGQTVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP--TTTSQTPAPT 118
E ++ E ++ M++K K STV+ A + A P TT S + P
Sbjct: 59 ECQLKEGDQIIFMISKKK------STVTKVTEPPAAAAAQAQAPGANPEITTASNSATPG 112
Query: 119 V---APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDV-YGQAASNLVAGSNLEA 174
+ A PE P A A A A AP ++ + +++ V G+
Sbjct: 113 LIETAAASGTPEGTPQTGNDTTASASANTATDAGAPATTTAATELSPSSAGFVTGTQRNE 172
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
TV++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE + QA
Sbjct: 173 TVERIMEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPENLQQQHQQQQQQPTQA-- 227
Query: 235 PPAQTQAQQPAAPAPTSGPNAN------PLDLFPQGLPNMGSNAGAGT 276
Q A + +A A +G +A+ DLF Q G+ AG+
Sbjct: 228 -SPQNIANEGSATATATGDDAHAEEPPAEDDLFAQAAQGSGNAGSAGS 274
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 130/309 (42%), Gaps = 59/309 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K I+V+ D V K+ + + + ASQ ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPIDVELTDTVLSTKEKLAAEKDCE---ASQLKFVYSGKVLPDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K SA P+S QP +
Sbjct: 58 SLKIKEGDAIIFMISKTK--------------------KSATPSSEQPQASK-------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + + +P PA A + A A + ++ Q G E ++ I+
Sbjct: 90 PEKESSKESEDKGSPTPA---AEEESGAGASGAQAGSIFAQ-------GDERENNIRNIM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
+MG ++R V ALRAA+NNP RAVEYL +GIPE P P AS+GG P +
Sbjct: 140 EMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESLQAPQPNYSASSGG--AQPAVEA 194
Query: 240 QAQQPAAPAPTSGPNANPLDLF-------PQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
++ G N LF Q +A G D L Q + LR
Sbjct: 195 ESTHNEDEENEHGEN-----LFEAAAAAAAQEGGAGDQDAAEGAGDDLNEENQMRLLRAA 249
Query: 293 VQANPQILQ 301
+Q NP+++Q
Sbjct: 250 LQTNPELIQ 258
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 98/223 (43%), Gaps = 37/223 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ EI V +D + DVKK I P +Q LI G +LKD +
Sbjct: 1 MKIKVRTLQNNEEEINVDNDDTILDVKKKIGVAFPE--MPYDKQKLIFSGNILKDESKAM 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + EN V+VM K SS T+ T ++ + V
Sbjct: 59 D-ILKENDIVIVMACKKIFSS------------------------TKNNQTKESSSKDVI 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S PP A + AP ++S A S LV G L+ T+ I
Sbjct: 94 KSNEKASSLPPNCDQNNATSNAPEEGTENRSLNS-------AESALVTGEKLKETIDNIC 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
MG ++RETV +A+ A+NNP RA++YL +G PE++ V +
Sbjct: 147 AMG---FERETVKKAMMMAFNNPNRAIDYLTNGFPEESQVNEI 186
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 96/201 (47%), Gaps = 32/201 (15%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 50 TPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 109
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 110 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 166
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P PP P +PA + + +G L+F
Sbjct: 167 VDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLEF 206
Query: 280 LRNSQQFQALRTMVQANPQIL 300
LRN QFQ +R ++Q NP +L
Sbjct: 207 LRNQPQFQQMRQIIQQNPSLL 227
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 96/201 (47%), Gaps = 32/201 (15%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 50 TPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 109
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 110 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 166
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P PP P +PA + + +G L+F
Sbjct: 167 VDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLEF 206
Query: 280 LRNSQQFQALRTMVQANPQIL 300
LRN QFQ +R ++Q NP +L
Sbjct: 207 LRNQPQFQQMRQIIQQNPSLL 227
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 96/201 (47%), Gaps = 32/201 (15%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 40 TPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 99
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 100 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 156
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P PP P +PA + + +G L+F
Sbjct: 157 VDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLEF 196
Query: 280 LRNSQQFQALRTMVQANPQIL 300
LRN QFQ +R ++Q NP +L
Sbjct: 197 LRNQPQFQQMRQIIQQNPSLL 217
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 145/300 (48%), Gaps = 43/300 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ GK+L D L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKRLKEKIEEEKGKDHFPVSGLKLIYAGKILSDDKPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+++ +FVVVM TK K +++ +A ++APP +
Sbjct: 61 EYKISDKNFVVVMATKPKTAAAAPQPSAAG--------TTAPPALDPGPDPCRRHRLRPP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP PE+ P P P + SS +++ +A SNLV G + E+ V +I+
Sbjct: 113 PPPPRPENRCSIVFIDLTAPPPPLPPSRGSEGSSGTNLIDEAVSNLVTGPSYESMVNEIM 172
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP+RAVEYL TA P A A+ A PA T
Sbjct: 173 LMG---YEREQVVAALRASFNNPDRAVEYLL------TAAGPAAEATPASSAPAAPAGT- 222
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+PA G NP L FLRN QFQ +R ++Q N +L
Sbjct: 223 ----GSPAGAEG--VNP-------------------LSFLRNQPQFQQMRQLIQQNAALL 257
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 138/309 (44%), Gaps = 67/309 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + +++ + ASQ ++ GKVL+D T E
Sbjct: 1 MQVIFKDFKKEKIPLEVELSDSVLSAKEKLASLKECE---ASQVKFVYSGKVLQDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ EN V+ M++K K +++ + A
Sbjct: 58 NFKIKENDQVIFMISKPKKAAAAPEPAAKEQA---------------------------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+PA A AP PA PA S + AS +GS E +Q I+
Sbjct: 90 -------------SPAGAAAPVAEPAQ-PAQEGSSATPAAFDASTFASGSVRETAIQNIM 135
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R V +AL AA+NNP+RAVEYL SGIP++TA PP A Q+G P QT+
Sbjct: 136 AMG---FERPQVEQALTAAFNNPDRAVEYLLSGIPQRTAEPP-----AAAQSGEP--QTE 185
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL-DFLRNSQQFQALRTMVQANPQ- 298
QPAA + PN + L + G +A DF+ +LR ++Q P+
Sbjct: 186 -DQPAAEDTNASPNPDNLFEAAAAAGSQGQDADQQQEGDFMG------SLREILQQQPEM 238
Query: 299 ---ILQQWA 304
+LQQ A
Sbjct: 239 AEAVLQQLA 247
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 109/219 (49%), Gaps = 38/219 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P +K+ DVK I +G +P SQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKGKIAMEKG---WPPSQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPA--NQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K S+ A++ S PA A T ++ + T S+TPA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAPSASAASSSQTPAIPPSAPTPATPSAPTRANVTASETPA-- 115
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P PA A + A P S L+ G+ + + Q
Sbjct: 116 ----------TPSPAGGAGSGATFNDP------------------SALLMGNQGQEAIAQ 147
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
+ MG + R + RA+RAAY NP+RA+EYL +GIP++
Sbjct: 148 MEAMG---FSRSNIDRAMRAAYFNPDRAIEYLLNGIPDE 183
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 134/313 (42%), Gaps = 64/313 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ K K +++ V KK + + D SQ LI+ GKVL+D ++E
Sbjct: 4 ILFKDFKKQKISLDLPASSTVLHAKKQLAEQKECD---DSQIKLIYSGKVLQDSNSIEGC 60
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ + V+ M++K K STV+ T+PT + + AP VA
Sbjct: 61 GLKDGDQVIFMISKKK------STVTQV---------------TEPTESKEVAAPEVAAS 99
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
V ES A APA + PV++ +D V GS V +I++M
Sbjct: 100 APVAESTET----ATEAAPAHSTTEGQQPVTASND------PGFVVGSQRNEAVDRIMEM 149
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V RALRAA+NNP+RAVEYL GIP+ +AQ
Sbjct: 150 G---YEREEVERALRAAFNNPDRAVEYLLMGIPDHLQQQQQQPQVT----------QEAQ 196
Query: 243 QPAAP----APTSGP--NANPLDLFPQGLPNMGSN-------AGA--GTLDFLRNSQQFQ 287
+P + A T+G + N DLF Q N ++ AG+ G++ +
Sbjct: 197 EPTSGSTEVAQTAGEQGDINEDDLFAQAAQNNATDGSTGASAAGSQPGSIGL--TMEDLL 254
Query: 288 ALRTMVQANPQIL 300
ALR +V NP+ L
Sbjct: 255 ALRQIVAGNPEAL 267
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 137/306 (44%), Gaps = 68/306 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VYPASQQMLIHQGKVLKDVT 57
M++ VKTL+ F++E +P V D K IE SD VY A Q LI+QGK+L+D
Sbjct: 1 MQLTVKTLQQKAFKVEAEPSILVKDFKALIEEAGKSDHGGVYKAEAQKLIYQGKILEDEK 60
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+EE ++ E F+V+M+TK KV + + +T S TPA
Sbjct: 61 KIEEYQITEKGFIVLMVTKPKVVPKPVEPKP---------EPTPAAPAAAASTESSTPAE 111
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
+ + + + P A A AP +NL+A E+ V+
Sbjct: 112 STSSTDATTTPSQPVATEAAAPV-------------------NPHVANLMAMGFPESQVK 152
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
Q AL AA+NNPERAVEYL +GIPE+ +A+ + +A A
Sbjct: 153 Q----------------ALSAAFNNPERAVEYLMNGIPEEL----LAQMTTTPEAAAASA 192
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
T A AAP T+ S + TL+ +RN QFQ +RT+++ NP
Sbjct: 193 GTTADASAAPTVTA-----------------PSRSVGSTLEQIRNEPQFQQIRTLIRNNP 235
Query: 298 QILQQW 303
Q+L Q+
Sbjct: 236 QLLSQF 241
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 108/217 (49%), Gaps = 34/217 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D A +Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQNKFTLDVEPTDLISTVKQRISEEKGWD---AKEQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVML-TKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
K+ E FVV M+ ++ A++ SA P+ AQ ++ P P ++Q P
Sbjct: 58 SYKIEEKGFVVCMIQKPKAKPAAPAASSSAVPSTPAQPVAATPAVPAAPQASTQAAVP-- 115
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S P PAA A P+ A G + +VA N+EA
Sbjct: 116 --------STPTPAARVGAGGDGAPTDPSMA--------MGAQRAEVVA--NMEA----- 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + ALRAA+ NP+RAVEYL +GIPE
Sbjct: 153 --MG---FERSQIDAALRAAFYNPDRAVEYLLTGIPE 184
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 143/345 (41%), Gaps = 90/345 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K SSS A T S AP+ ++ +S P P ++ A
Sbjct: 58 SYNIEEKGFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPP 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S + P A P S L++GS EA + +
Sbjct: 117 ATPSPAAATQPSDAAFNDP------------------------SALLSGSQGEAVISHME 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-------------------- 220
MG + R+ + RA+RAA+ NP RA+EYL +GIPE
Sbjct: 153 SMG---FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQ 209
Query: 221 PPVARASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAG 273
PP A A GN PA T ++P AA A T GP+ GS AG
Sbjct: 210 PPAASA-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAAG 254
Query: 274 AG--TLDFLRNSQQFQA---------------LRTMVQANPQILQ 301
G LDFLRN+ FQ L+ + NPQI Q
Sbjct: 255 EGLPNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQ 299
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 100/217 (46%), Gaps = 36/217 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV+ D V K+ + + + ASQ L++ GKVL D TLE
Sbjct: 1 MQIIFKDFKKQTVPIEVELTDTVLSTKEKLGQAKSCE---ASQIKLVYSGKVLVDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT-SSAPPTSTQPTTTSQTPAPTV 119
E K+ E ++ M++K+K S+ S+ P QA T P + +QP +
Sbjct: 58 EYKIKEGVSIIFMISKAK------SSQSSTPQPQAAATPEQKPASESQPKQETSQLGNAA 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A + + A APA S GS EAT+Q I
Sbjct: 112 ATSAAAAAAPASDEAVTEAPA-----------------------STFAVGSEREATIQNI 148
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 149 MEMG---YDRPQVENALRAAFNNPHRAVEYLITGIPE 182
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 13/227 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F +EV+P +S VK+ I +G D Q LI+ GK+LKD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTYLISAVKEKISAEKGWD---PKHQKLIYSGKILKDDETVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K+ + SS NQ + P T + A
Sbjct: 58 SYNIEEKGFVVCMVNKACLFSSQLRRC----FNQTGRLTYLQPKEKPAPTAESSAAAAPP 113
Query: 121 PPQSVPESAPP--PAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
+ P ++ P PAAPA + A P P S + G+ S L G+ +
Sbjct: 114 ATPAQPVASTPAVPAAPAQSSTTQSAAPATPTPQRS-GEAGGETGSGLAMGAERAEAITN 172
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
+ MG ++R + A+RAA+NNP+RAVEYL +GIPE AR
Sbjct: 173 MEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHAR 216
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 39/221 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P + V VK+ I T +G DV P+ + LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS-QTPAPTV 119
+ E F+V M++K K TQP++ S TPA +V
Sbjct: 58 FYNIEEKGFIVCMVSKPK---------------------------TQPSSQSPSTPAKSV 90
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN----LVAGSNLEAT 175
+ P + P + P PA P+P SS + + N L+ GS E
Sbjct: 91 TSTPAPPPAPAPSTNTSTTATSGPVPA-TPSPASSGAAQSSASTFNDPSALLTGSQSEEV 149
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+ Q++ MG ++RE + RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 150 INQMMSMG---FEREQINRAMRAAFFNPDRAIEYLLNGIPE 187
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 137/308 (44%), Gaps = 68/308 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IEV DKV +K+ I +GS+ +P Q LI+ GK+L D L
Sbjct: 1 MLITLKTLQQKTFKIEVDENDKVFALKELIAKEKGSE-FPIECQRLIYSGKILDDDKALC 59
Query: 61 ENKVA-ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + +FVVVM K KV + S ++ Q S+ + QP S TP T
Sbjct: 60 EYNIDPVKNFVVVMSVKPKVVTKDGDKSSGVGSSTPQVESTVSMETVQP---SSTPLLT- 115
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S + + A + P D+ ++ + GS L++++ ++
Sbjct: 116 --------STASASETTSVSTTSTAVSSQP-------DI----GTSFLTGSALDSSINEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ +G + RE V+RAL+ ++ N +RA EYL SG VP + + P
Sbjct: 157 MSLG---FSREQVLRALQRSFQNADRAAEYLLSG-----NVPELVE--------DAPGDI 200
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNSQQFQALRTMVQAN-- 296
+ A PA + GA G L+FLR+ QF+ +R+ VQ +
Sbjct: 201 DEESEALPA----------------------DVGAEGDLNFLRDFPQFRMMRSQVQRHPD 238
Query: 297 --PQILQQ 302
PQ+LQ+
Sbjct: 239 TLPQLLQE 246
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 134/304 (44%), Gaps = 46/304 (15%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
+K L+ F +E++ V +K+ +E +G D YPA Q LI+ GK+ +D TTLE +
Sbjct: 6 LKNLQQQTFTVEIELSATVKALKEKVEKEKGGD-YPAVGQKLIYAGKIPQDDTTLESYNI 64
Query: 65 AENSFVVVMLTK-----SKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ F+V+M+TK V S + V + ++ +S +T S A
Sbjct: 65 DDKKFLVIMVTKPKAPPPPVGPSDPTIVETEETPAEEPAATTESSSQSTSTPSTESAAAA 124
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ + + + A PA AP SV G A S LV G V+ I
Sbjct: 125 GTNTTTTTTTTSSSQSSAASNTQSTPATQAAPGGSV----GSAESLLVMGEEFNRMVENI 180
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V RALRA++NNP AV+YL GIP P + +A PAQ
Sbjct: 181 MEMG---YERSQVERALRASFNNPYTAVQYLVDGIP-----PNLEEPAA------QPAQG 226
Query: 240 QAQQPAAPAPTSG---PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
G P+ +P L+FLR+ QF+ +R M+++N
Sbjct: 227 GDGGGEEQVVAEGEADPDEDP-------------------LNFLRSQPQFEQMRQMIRSN 267
Query: 297 PQIL 300
P +L
Sbjct: 268 PSLL 271
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 123/269 (45%), Gaps = 48/269 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P +K+ VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSEKIGQVKEKISAEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M +K K AAP+ A+ ++ A P ST + A + +
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------AAPSKPAEPSTPAKPVSTPAAPAAPQAAQSTS 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q +P PA+ A P S L G A + +
Sbjct: 108 ASQPPATPSPAPASTAATSESGNFNDP----------------SALALGEQRTAAIAGME 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGGQAGNPPA 237
MG + R+ + RA+RAA+ NP+RAVEYL +GIP +Q P A P
Sbjct: 152 AMG---FARDQIDRAMRAAFFNPDRAVEYLLNGIPASAQQEERPAAASPR--------PT 200
Query: 238 QTQAQQPAAPA----PTSGPNAN-PLDLF 261
Q QQP APA T+ P+ + P++LF
Sbjct: 201 SNQGQQPVAPATIATETAAPSGDEPVNLF 229
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 133/315 (42%), Gaps = 75/315 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
V VK LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 26 FNVAVKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 82
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K SSS A T S AP+ ++ +S P P ++ A
Sbjct: 83 SYNIEEKGFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPP 141
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S + P SD S L++GS EA + +
Sbjct: 142 ATPSPAAATQP------------------------SDAAFNDPSALLSGSQGEAVISHME 177
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-------------------- 220
MG + R+ + RA+RAA+ NP RA+EYL +GIPE
Sbjct: 178 SMG---FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQ 234
Query: 221 PPVARASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAG 273
PP A A GN PA T ++P AA A T GP+ GS AG
Sbjct: 235 PPAASA-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAAG 279
Query: 274 AG--TLDFLRNSQQF 286
G LDFLRN+ F
Sbjct: 280 EGLPNLDFLRNNPHF 294
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 109/216 (50%), Gaps = 28/216 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + +S+VK I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFVIEAEPTELISEVKDKISKEKG---WEASQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K + + +S+ + AP+ A T++ P P +S T V
Sbjct: 58 SYHIEEKGFIVCMVSKPKAAPAASSSATKAPSTPAPATAATPAPPAAPAHSSSTTNTAV- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PA P+PA A P+ P+ + L G+ A QI
Sbjct: 117 -----------PATPSPAGASVPSVQATPS----------NETTGLAMGAERSA---QIA 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+M ++R + A+RAA+ N ERA+EYL +GIPE
Sbjct: 153 EMEAMGFERSQIDLAMRAAFFNSERAIEYLLTGIPE 188
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 114/234 (48%), Gaps = 39/234 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IEV+P D +S VK+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVIEVEPTDLISAVKQKISEERGWD--PKLQK-LIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP----TTTSQTPA 116
K+ E FVV ++ K K + + A+ S+ + A + P T++S+
Sbjct: 58 SYKIEEKGFVVCVVNKPKAAPASAAAASSNAPPATPAAAPAATPAAPPAPAQTSSSEPAV 117
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P PQ E AP A P +S+ G A +A N+EA
Sbjct: 118 PATPTPQRAGE------------APGGANFNDPNMLST-----GAARDEAIA--NMEA-- 156
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---QTAVPPVARAS 227
MG ++R + A+RAAY NP+RAVEYL +GIPE Q PP ARA+
Sbjct: 157 -----MG---FERTQIDAAMRAAYFNPDRAVEYLLNGIPENLRQATQPPAARAA 202
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 123/300 (41%), Gaps = 68/300 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VK L F IE+ + V D+K+ I ++G+ +PA Q LI QG+++ D ++
Sbjct: 3 LTVNVKCLTNELFTIEIDDDCTVKDMKEKISEIKGA-AFPAVHQKLIAQGRIMADQDKVK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ FVV+M++K PA AQ A T + A V
Sbjct: 62 TYDLKSVKFVVIMVSK--------------PATGAQ--PGAASTEQPAAPAAAAEAKPVE 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ P+ A P A P+ + A S LV G + V+ I
Sbjct: 106 SPEEKPKEAGTPTATRPSTTTPSTDSSAGN------------ESTLVVGEQYKQMVESIT 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + ++ V RALRA+YNNP+RAVEYL +G P A NP A Q
Sbjct: 154 EMG---YPQDQVERALRASYNNPDRAVEYLVTGFP--------PEEEEARAAENPRAPRQ 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
P G+ G L FLRN QFQ +R ++ NP +L
Sbjct: 203 -------------------------PGAGTQ---GDLSFLRNQPQFQQMRNAIRDNPALL 234
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 102/218 (46%), Gaps = 44/218 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P DK+S VK+ I +G D P SQ+ LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKISAVKEKISAEKGWD--PKSQK-LIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS--APPTSTQPTTTSQTPAPT 118
+ E FVV M+ K K +++ A+ S+ PP Q +T
Sbjct: 58 SYNIEEKGFVVCMVNKPKPAAAPAAAAPPPATPAPPVASTPVVPPAPVQTST-------- 109
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A PPA P P + A P S L GS +
Sbjct: 110 ---------QAAPPATPTPNRS-AGTP------------------SGLAMGSE---RAEA 138
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
I +M ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 139 IANMEAMGFERTQIEAAMRAAFNNPDRAVEYLLTGIPE 176
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Ustilago hordei]
Length = 424
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 45/227 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K I+ QG +P Q +I GK+L D T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQKEQG---HPPELQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST---VSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + E F+VVM++K K A+ V +APA
Sbjct: 58 DCNIKEKDFLVVMVSKPKAPKPAAAADKPVESAPA------------------------- 92
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD---VYGQAASNLVAGSNLEA 174
E A A APA + +P+S ++ G + + + G LE+
Sbjct: 93 --------AEEANKDDATAPAANTTATQSTTTSPISDSTEGQTTTGGDSGSFLTGGPLES 144
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+ +++MG + RE V RA+RAA+NNP+RAVEYL +GIPE A P
Sbjct: 145 AMSSMMEMG---FQREQVQRAMRAAFNNPDRAVEYLMTGIPEHLANP 188
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Strongylocentrotus purpuratus]
Length = 467
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F +E++ V ++K IE QG D +PAS Q LI+ GK+L D L
Sbjct: 1 MLIVLKTLQQQTFRVEIEDSATVRNLKDEIEKTQGKD-FPASGQKLIYAGKILSDDNPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E SFVVVM+TK + A P T ++ + VA
Sbjct: 60 SYNIDEKSFVVVMVTKRLQTEEKKEE----------KKEEAKPQETAAAASASASSAPVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ ++A A PA S + + A S LV G + V +++
Sbjct: 110 MEEGTTKAAEEKKTEEKAAEPAAETKTQEESSSGLQ-AFHSAESTLVTGEEYQNMVTELM 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYL 210
+G + R+ VIRA++A+YNNP RA EYL
Sbjct: 169 SLG---FPRDKVIRAMQASYNNPNRAAEYL 195
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 31/145 (21%)
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
+ A S LV G + V +++ +G + R+ VIRA++A+YNNP RA EYL GIP+
Sbjct: 209 FHSAESTLVTGEEYQNMVTELMSLG---FPRDKVIRAMQASYNNPNRAAEYLVVGIPDPP 265
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
P G+ P + Q + + G ++P +L+
Sbjct: 266 PETP----------GDQPPSQPSLQSSQSSSQPGGESSP------------------SLE 297
Query: 279 FLRNSQQFQALRTMVQANPQILQQW 303
FL QFQ LR + ++P +L Q+
Sbjct: 298 FLDQLPQFQQLREAISSDPAMLSQF 322
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
Length = 404
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 98/215 (45%), Gaps = 28/215 (13%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ K K +E+ + + K I + + D+ Q LI+ GK+LK+ T+ +
Sbjct: 4 LIFKDFKKEKIPLELDADSTIESAKGQIASEKNCDI---DQIKLIYSGKILKNDATILNS 60
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ +N ++ M++K K + ASTV P S TT +T A P
Sbjct: 61 GLKDNDHIIFMISKKKKKTEPASTVKVTE-----------PASV--TTNVETQAE--GTP 105
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S P + P PA + A A S+ A V G+ T+Q+I++M
Sbjct: 106 NSDPSANATPEVPAATTSNAAAGDDTETTTSA-------ADPGFVVGTERNETIQRIMEM 158
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
G + RE V ALRAA+NNP+RAVEYL GIPE
Sbjct: 159 G---YQREEVEAALRAAFNNPDRAVEYLLMGIPEH 190
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 101/216 (46%), Gaps = 37/216 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V K K + ++++ + VK+ + D SQ LI GKVLKD ++E
Sbjct: 4 VTFKNFKKEKYPLDLESSQSIVAVKEALSEKLSCD---PSQIKLIFSGKVLKDGDSVESC 60
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT--SSAPPTSTQPTTTSQTPAPTVA 120
+ + V+ M++ K +++ T S+AP Q++ T S P TSTQP T
Sbjct: 61 NFKDGNEVIFMVSAKKATATKV-TESSAPKAQSEETPSESTPATSTQPETNQNETTE--- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PA + AP + D + V GS AT+++I+
Sbjct: 117 ------------------PATNSSSENTEAPNAGTDDGF-------VVGSERNATIERIM 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+MG ++R V RALRAA+NNP+RAVEYL GIPE
Sbjct: 152 EMG---YERAEVERALRAAFNNPDRAVEYLLMGIPE 184
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 30/216 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +SSG T+S AP TP+ V
Sbjct: 58 SYNIEEKGFIVCMVSKPKATSSG-------------TSSQAP----------STPSRAVT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P + P AA P+ A + + ++ L++G+ EA V Q+
Sbjct: 95 STPAAPPAPAPSAASTTPAVPSTPSPAAAGAAQAQGSAFNDPSA-LLSGTQSEAVVAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R V RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 154 AMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPE 186
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 112/242 (46%), Gaps = 31/242 (12%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 6 FKNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTVSECGL 62
Query: 65 AENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQS 124
+ VV M+++ K + + + AAP A T + P++ Q T
Sbjct: 63 KDGDQVVFMISQKKSTKTKVTEPPAAPET-ATTVPAGEPSTEQATA-------------- 107
Query: 125 VPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
SA P APA A P P S+ V + V G+ T+++I++MG
Sbjct: 108 ---SADAPTAPA-----AEELQPQEEPNSNTEQVESVSTPGFVVGTQRNETIERIMEMG- 158
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQ 243
+ RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A+Q
Sbjct: 159 --YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEQQQQAVAPTEQPPTTATTAEQ 215
Query: 244 PA 245
PA
Sbjct: 216 PA 217
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
Length = 375
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 31/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPTETVGQVKEKIAREKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K ++G + A A A ++ A S Q P+
Sbjct: 58 SYNIEEKGFIVCMVSKPK-PAAGGPSTPAKAAPPATPSAPAQAPSASTAAAPQVPS---- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA + A A ++ +D S L GS EA + Q+
Sbjct: 113 ---------------TPTPASSGATTAATGEAAAFND-----PSALAMGSQGEAVISQME 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R + RA+RAA+ NP+RAV+YL +GIPE
Sbjct: 153 AMG---FPRADIDRAMRAAFFNPDRAVDYLLNGIPE 185
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 95/221 (42%), Gaps = 57/221 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVVVM+ + K
Sbjct: 61 EVMIDPSKFVVVMIARKK------------------------------------------ 78
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEATV 176
P AP + P P+ PA A A SV+D G Q L S E T
Sbjct: 79 -----PIGAPVESTPQPSNLQIPAGAQATTAPVSVAD-SGPSTPQNPDGLT--SEQEETA 130
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+
Sbjct: 131 QAIVAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEE 168
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 25/216 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + +SDVK IE +G + A+QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPTELISDVKAKIEKEKG---WEAAQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M++K K + + A + +T++ P P VA
Sbjct: 58 SYKIEEKGFIVCMVSKPKPAPA------------AAAPKEPATPAPAASTSTPVPPPVVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P+ P+PA A A +D S L G+ V +
Sbjct: 106 SNSGT--NTGIPSTPSPAGAGVSATPAPAPAQPQFND-----PSALTIGAQRAEAVANLE 158
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R ++ A+RAA+ NP+RAVEYL +GIPE
Sbjct: 159 SMG---FERASIDAAMRAAFFNPDRAVEYLLNGIPE 191
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 18/220 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + E+ + V D+K +I + + P S Q LI+ GK+L+D TLE
Sbjct: 1 MKLTIKNINKEVYSFELDSDKTVLDLKNSI--FEKYNQIP-SWQTLIYSGKILEDKNTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K++E F+V+M+ K + +T + +++ ++ S T++QP T+ P T
Sbjct: 58 SYKISEQGFIVMMIKKPR---EAPATATTTSPSESTSSPSNSTTTSQPANTTSAPVTTPN 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + P + P + P P+ +P+ +S +D V G+ LE T++ I+
Sbjct: 115 PTPARPTTPNPTPTTSSTPGTTPSSNTSPSQNTSSTD--------FVTGTELENTIKNIV 166
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 219
DMG + RE VIRALR YNN +RAVE L SG IPE A
Sbjct: 167 DMG---FQREQVIRALRLGYNNADRAVELLLSGSIPENAA 203
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 36/220 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
+ E F+V M++K K S++ +S + PA A +T +AP + PTT+
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAPSTSAAASSQAPSTPAPVAASTPTAPAPRSNPTTSDAPAT 117
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P+ A P + P P S L+ G E +
Sbjct: 118 PSPAAPAAAPAVGGAATFNDP--------------------------SALLMGPQGEQVI 151
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
Q+ MG + R + RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 152 AQMESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE 188
>gi|401626135|gb|EJS44097.1| rad23p [Saccharomyces arboricola H-6]
Length = 401
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 139/315 (44%), Gaps = 60/315 (19%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
K K ++++P + + + K + + SQ LI+ GKVL+D T+ E +
Sbjct: 6 FKNFKKEKVPLDLEPSNTIFEAKTKLAQTASCE---ESQIKLIYSGKVLQDSKTVSECGL 62
Query: 65 AENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQS 124
+ VV M+++ + + + + AP A TT+ ST+P +TS T APT A +
Sbjct: 63 KDGDQVVFMISQKRSTKTKVTEPPIAPETAA-TTNPVRDDSTEPASTS-TDAPT-AETST 119
Query: 125 VPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAAS-NLVAGSNLEATVQQILDMG 183
E + P PA G A++ V G+ T+++I++MG
Sbjct: 120 AAEGSQPQEEQTSTTEPA-----------------GSASTPGFVVGTQRNETIERIMEMG 162
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA-- 241
+ RE V RALRAA+NNP+RAVEYL GIPE P +P Q A
Sbjct: 163 ---YPREEVERALRAAFNNPDRAVEYLLMGIPENLRQP------------DPQQQAVAAN 207
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS----------------QQ 285
+QPA A T+ A DLF Q G N +G L + ++ +
Sbjct: 208 EQPATAATTTEQPAED-DLFAQAA--QGGNTSSGALGSVGSAADAAQGGPPGSIGLTVED 264
Query: 286 FQALRTMVQANPQIL 300
+LR +V NP+ L
Sbjct: 265 LLSLRQVVSGNPEAL 279
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 118/251 (47%), Gaps = 47/251 (18%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q T APT P P SA
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASAT 60
Query: 131 PPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEA 174
+ PAPA A PA PA PV SS S+++ A S LV G + E
Sbjct: 61 ASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYEN 120
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 229
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 121 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGA 177
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q+ A +SG G P L+FLRN QFQ +
Sbjct: 178 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQM 216
Query: 290 RTMVQANPQIL 300
R ++Q NP +L
Sbjct: 217 RQIIQQNPSLL 227
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 99/221 (44%), Gaps = 40/221 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + ++DVK I +G + A +Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETIADVKAKISAEKG---WEADKQKLIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+ K K P + +
Sbjct: 58 SYNIEEKGFIVCMIQKPK-----------------------------PQPAASASKAAPS 88
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAA-----SNLVAGSNLEAT 175
P P A P+APA + AP+ P+P + G S+L G EA
Sbjct: 89 TPAREPAQASTPSAPAQSSAPSSNVPATPSPAPAAPQAAGTPQQFNNPSSLTMGPEREAA 148
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+ + MG + R + RA+RAAY NP+RAVEYL +GIPE
Sbjct: 149 IANMESMG---FPRADIDRAMRAAYFNPDRAVEYLLTGIPE 186
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 128/309 (41%), Gaps = 68/309 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPAPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ+ A A A A P S L+ G E + Q+
Sbjct: 106 NPQTTDAPATTSPAAPAAAGGATFNDP----------------SALLMGPQGEQVIAQME 149
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 150 SMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATTA 197
Query: 241 AQQPAAPAPTSGPNANPLDLFP---------------------QGLPNMGSNAGA--GTL 277
PAAPA T G ++LF QGL G G L
Sbjct: 198 PSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLATAAEGQGGSLGNL 255
Query: 278 DFLRNSQQF 286
DFLRN+ F
Sbjct: 256 DFLRNNPHF 264
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 109/217 (50%), Gaps = 34/217 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F +EV+P D +S VK+ I +G D A +Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQNKFTLEVEPTDLISTVKQRISEEKGWD---AKEQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVML-TKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
K+ E FVV M+ ++ A++ SA P+ AQ ++ P P ++Q P
Sbjct: 58 SYKIEEKGFVVCMIQKPKAKPAAPAASSSAVPSTPAQPVAATPAVPAAPQASTQAAVP-- 115
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S P PAA A A P+ A G + +VA N+EA
Sbjct: 116 --------STPTPAARAGAGGDGAPTDPSMA--------MGAQRAEVVA--NMEA----- 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + ALRAA+ NP+RAVEYL +GIP+
Sbjct: 153 --MG---FERSQIDAALRAAFYNPDRAVEYLLTGIPD 184
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 23/214 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ KTL+ F IE +P + V+D+KK I+ QG +PA Q +I GK+L D T+
Sbjct: 2 VRIQFKTLQQKQFFIEAEPTETVADLKKKIQADQG---FPAESQKIIFSGKILPDEKTVG 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E E F VVM+ K K + + A+ SAAP+ A + + + + P
Sbjct: 59 EANFKEKDFCVVMVAKPKAAPASAAATSAAPSTPAAAPAPPQTPAQPASAPASAPNAPGP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S +A PAPA A PA A++ ++GS LE ++ +++
Sbjct: 119 AAPSSAPAATEAETPAPA-------ANQPAD----------EATSFISGSALETSISEMV 161
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
MG + RE V RA+RA++NNP RAVEYL +GI
Sbjct: 162 AMG---FPREQVQRAMRASFNNPHRAVEYLMTGI 192
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 92/198 (46%), Gaps = 33/198 (16%)
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNL 166
S TPA T A + P SA PA PA AP + S+ S+++ A S L
Sbjct: 53 SITPASTTASSEPAPASATKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSAL 112
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
V G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 113 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP 169
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
AS G + A +SG G P L+FLRN
Sbjct: 170 PPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------LEFLRN 208
Query: 283 SQQFQALRTMVQANPQIL 300
QFQ +R ++Q NP +L
Sbjct: 209 QPQFQQMRQIIQQNPSLL 226
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 73/136 (53%), Gaps = 38/136 (27%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
N+V+ + ATVQQ++DMG + + V ALRAA+NNPERAVEYL +GIPEQ A P
Sbjct: 145 NVVSDEQMSATVQQLVDMG---FPEDQVRSALRAAFNNPERAVEYLMTGIPEQAAAP--- 198
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
AQT P+SG +A GS+ A +L+ LRN
Sbjct: 199 ------------AQT-------AVPSSGASA-------------GSDDVANSLEALRNHP 226
Query: 285 QFQALRTMVQANPQIL 300
QF ALR +VQ+NP L
Sbjct: 227 QFDALRQLVQSNPAAL 242
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 114/256 (44%), Gaps = 54/256 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K IE+ + +S K+ I + D ASQ LI+ GK+L+D T+
Sbjct: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD---ASQIKLIYAGKILQDPKTVS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E V+ M++K+K + T S ++ P +Q T +++T
Sbjct: 58 GCNLKEGDQVIFMISKTKKKADVKVTES----------TTEPQDESQATASAET------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+A A APA A + + G ++ V GS TV +I+
Sbjct: 102 ------------SAVANAPAEATTTGTRTGTTAVTQE-EGTTDASFVTGSQRNETVNRIM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DRE V RALRAA+NNP+RAVEYL GIPE + P+Q Q
Sbjct: 149 EMG---YDREQVERALRAAFNNPDRAVEYLLMGIPE----------------ASEPSQQQ 189
Query: 241 AQQPAAPAPTSGPNAN 256
A+ A +G NAN
Sbjct: 190 AE---AVTSEAGANAN 202
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 118/251 (47%), Gaps = 47/251 (18%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q T APT P P SA
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASAT 60
Query: 131 PPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEA 174
+ PAPA A PA PA PV SS S+++ A S LV G + E
Sbjct: 61 ASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYEN 120
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 229
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 121 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGV 177
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q+ A +SG G P L+FLRN QFQ +
Sbjct: 178 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQM 216
Query: 290 RTMVQANPQIL 300
R ++Q NP +L
Sbjct: 217 RQIIQQNPSLL 227
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 111/242 (45%), Gaps = 31/242 (12%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 6 FKNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTVSECGL 62
Query: 65 AENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQS 124
+ VV M+++ K + + + AAP A T + P++ Q T
Sbjct: 63 KDGDQVVFMISQKKSTKTKVTEPPAAPET-ATTVPAGEPSTEQATA-------------- 107
Query: 125 VPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
SA P APA A P P S+ + V G+ T+++I++MG
Sbjct: 108 ---SADAPTAPA-----AEELQPQEEPSSNTEQAESVSTPGFVVGTQRNETIERIMEMG- 158
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQ 243
+ RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A+Q
Sbjct: 159 --YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEPQQQAVAPTEQPPTTATTAEQ 215
Query: 244 PA 245
PA
Sbjct: 216 PA 217
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 140/329 (42%), Gaps = 72/329 (21%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E + E
Sbjct: 69 LKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIESYNIEEK 125
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K SSS A T S AP+ ++ +S P P ++ A S
Sbjct: 126 GFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPPATPSPAA 184
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSW 187
+ P SD S L++GS EA + + MG +
Sbjct: 185 ATQP------------------------SDAAFNDPSALLSGSQGEAVISHMESMG---F 217
Query: 188 DRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAP 247
R+ + RA+RAA+ NP RA+EYL +GIPE + + Q A A P P
Sbjct: 218 PRDDINRAMRAAFFNPTRAIEYLLNGIPEN-----IQQEQEQQQQQQQAATATAASPQPP 272
Query: 248 APTSGPNA-------NPLDLF-----------PQGLPNMGSNAGAG--TLDFLRNSQQFQ 287
A ++G NA P++LF P G GS AG G LDFLRN+ FQ
Sbjct: 273 AASAGGNAPATTGGEEPVNLFEAAAQAGTQEGPHG-ARSGSAAGEGLPNLDFLRNNPHFQ 331
Query: 288 A---------------LRTMVQANPQILQ 301
L+ + NPQI Q
Sbjct: 332 QLRQLVQQQPQMLEPILQQVAAGNPQIAQ 360
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 103/217 (47%), Gaps = 33/217 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEQRGWD---PKLQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + + ++ SA PA A SS P P TS T A
Sbjct: 58 TYKIEEKGFVVCVVNKPKPAPAPEASSSAVPATPAPAQSSTPAPPAAPAQTSGTAAAV-- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PA P P AP AP A + + +A +N+ A
Sbjct: 116 -----------PATPTPNRTAAPEAAPNDANALATGEQRAEAIANMEA------------ 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
MG ++R + A+RAA+ NP+RA+ ++ GIPE
Sbjct: 153 -MG---FERAQIDAAMRAAFYNPDRAL-TIHKGIPEH 184
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 117/215 (54%), Gaps = 20/215 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KT + F+IE+ D ++ +K I+ QG +P + Q +I+ GK+L + T++
Sbjct: 1 MKITIKTTQQKVFQIEIDTSDTIAVLKDKIQESQG---HPTAAQKIIYSGKILSNDKTID 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M++K K + + ++ S+AP + Q +S P P ++S V+
Sbjct: 58 SCGIKEKDFLVLMVSKPKPTPAATASTSSAPQD-VQMDTSPPAPPAAPPSSSTPAPVLVS 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
SV + P A PA PA APA +G S ++G L++ + +
Sbjct: 117 DTTSVTQPTTPAATPAATAPPAVAPA------------FGDM-STFLSGEALQSAITNMT 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+MG + R+ V+RA+RA+YNN +RAVEYL +GIP
Sbjct: 164 EMG---FPRDQVLRAMRASYNNADRAVEYLMTGIP 195
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 107/216 (49%), Gaps = 28/216 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V SQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---SQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +S+ A T S AP T ++ ++ P A
Sbjct: 58 TYNIEEKGFIVCMVSKPKATSAAA------------TPSQAPSTPSRAVASTPAAPPAPA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A P APA A P V S L++G+ EA V Q+
Sbjct: 106 PSAATSTPAVPATPSPAAPAQPSADTP----------VAFNDPSALLSGAQSEAVVAQME 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R + RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 156 SMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPE 188
>gi|259145863|emb|CAY79123.1| Rad23p [Saccharomyces cerevisiae EC1118]
gi|323349008|gb|EGA83243.1| Rad23p [Saccharomyces cerevisiae Lalvin QA23]
Length = 408
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 110/238 (46%), Gaps = 32/238 (13%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
P + +A A T A+QP+ A T+ A DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPSTAATTAEQPAED-DLFAQAA--QGGNASSGAL 247
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 34/217 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F++E +P D + VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFQVEAEPTDTIGSVKEKISKEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
K+ E F+V M +K K APP+ P T +++ A T
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------------------APPSKPADPATPAKSVASTP 95
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
APP + + A A+ APA + A V++ +D S L G A + +
Sbjct: 96 APPAAPAQFATSAASQAPATPSPAPASTASGDVATFND-----PSALAMGEQRAAAIANM 150
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R+ + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 151 EAMG---FPRDQIDAAMRAAFFNPDRAVEYLLNGIPE 184
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 99/217 (45%), Gaps = 41/217 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ P +++ K+ + + D SQ +I GKVL+D TLE
Sbjct: 3 ITIHFKDFKKERLPLQLSPSATIAEAKQMLARAKQCD---ESQLKMIFSGKVLQDGNTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K K A+T S P +++P+ Q+ A T
Sbjct: 60 GCKLKDGDQVIFMISKKK----------------AETRVSEPEPASEPSGGPQSEAST-- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A P A V S ++ V GS TV++I+
Sbjct: 102 ---------GLETVTTPGVSAAVDPESTGAAVGS--------GASFVTGSARSQTVERIM 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
+MG +DR V ALRAA+NNP+RAVEYL +GIPE
Sbjct: 145 EMG---YDRAQVEMALRAAFNNPDRAVEYLLTGIPEH 178
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 130/283 (45%), Gaps = 42/283 (14%)
Query: 27 KKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK-VSSSGAS 85
K+ + QG + A Q L++ GKVL+D T+ ++KV E ++ M+ K K VS
Sbjct: 17 KQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSD---- 69
Query: 86 TVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAP 145
A P + T+ A + T+ T S + A S + + + +
Sbjct: 70 ---AKPETKTSETAGAGKSETKATEASTSTAGN-------ETSTSGNSGTSNTSGVSGSG 119
Query: 146 APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPER 205
+ + A S D +G EA++Q I++MG ++R V ALRA++NNP R
Sbjct: 120 SGSGAVTSGGGD--------FASGDEREASIQNIMEMG---YERTQVEAALRASFNNPHR 168
Query: 206 AVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP--- 262
AVEYL +GIPE P ++ A+A G P A ++A A T G +LF
Sbjct: 169 AVEYLLTGIPESLQRPQISNAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAA 224
Query: 263 ----QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
QG G+ +GA + Q + LRT +Q NP+++Q
Sbjct: 225 AAAQQG--ESGAGSGAAGGADQGDDAQLRLLRTALQTNPELIQ 265
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 98/211 (46%), Gaps = 28/211 (13%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K AP+ A +S AP T ++ A + P +
Sbjct: 505 GFIVCMVSKPK----------PAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDI 554
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSW 187
+A P A A P S L+ G E V Q+ MG +
Sbjct: 555 TATPSPAAPVVAPVAGGSTTFNDP------------SALLMGPQGEQVVAQMESMG---F 599
Query: 188 DRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
R + RA+RAAY NP+RA+EYL +GIPE T
Sbjct: 600 PRSDIDRAMRAAYFNPDRAIEYLLNGIPETT 630
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 137/304 (45%), Gaps = 61/304 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K LK ++ V+P D V K+ + DV P SQ ++ GKVL+D T +
Sbjct: 1 MQVTFKDLKKQTVQVSVEPSDLVRVGKEKV--AAARDVDP-SQLKFVYSGKVLQDDKTFD 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E KV E ++ M+++ K + + V+A A++A + S P TSTQ
Sbjct: 58 EFKVKEGDSIIFMISQKKSPAPAPAPVAAPAASEAVSAPSEPETSTQ------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE+A AA A PA S SD + A +Q ++
Sbjct: 105 ----TPETASSTAANASTPA-------------SSSD-FASGQDREAA-------IQNMM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R + RALRAA+NNP RAVEYL +GIPE A +A PP Q
Sbjct: 140 EMG---YERPQIERALRAAFNNPHRAVEYLITGIPE-----------ALTRAEQPP---Q 182
Query: 241 AQ-QPAAPAPTSGPNANPLDLFPQGLPNMG--SNAGAGTLDFLRNSQQFQALRTMVQANP 297
AQ +PAA A + + + NM + A AG + LR +Q+ P
Sbjct: 183 AQEEPAAHAEAQTEHEDESNQEANVHENMFDVAEAAAGDEPVPAQEDRLALLRAAIQSEP 242
Query: 298 QILQ 301
+++Q
Sbjct: 243 ELVQ 246
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 43/219 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K +E++ + D K + +++ D+ Q LI GKVLKD T+
Sbjct: 1 MNIIFKDFKKEKIPVELESSSTILDAKNKLASIKSCDI---DQIKLIFSGKVLKDDQTVS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ +N V++M++K K A P++T+ T
Sbjct: 58 SCGLKDNDQVIMMISKKK----------------------ATPSATKVT----------E 85
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN---LVAGSNLEATVQ 177
PPQ E P P+ P+ A + +++ V GS TV+
Sbjct: 86 PPQQSEEQ--PVQEPSQEQEPSGTTAEPAPIAPAAPVAAEPESTSTPGFVTGSERNETVE 143
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+I++MG ++R+ V RALRAA+NNP+RAVEYL GIPE
Sbjct: 144 RIMEMG---YERDQVERALRAAFNNPDRAVEYLLMGIPE 179
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 379
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 128/309 (41%), Gaps = 64/309 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPTPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ A A A A P S L+ G E + Q+
Sbjct: 106 NPQPTDAPATSTPAAPAPAPAAAGGATFNDP------------SALLMGPQGEQVIAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 154 SMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATTA 201
Query: 241 AQQPAAPAPTSGPNANPLDLFP---------------------QGLPNM--GSNAGAGTL 277
PAAPA T G ++LF QGL G G L
Sbjct: 202 PSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNL 259
Query: 278 DFLRNSQQF 286
DFLRN+ F
Sbjct: 260 DFLRNNPHF 268
>gi|398407563|ref|XP_003855247.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
gi|339475131|gb|EGP90223.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
Length = 394
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 104/216 (48%), Gaps = 34/216 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K LK F I+ +P + + +K IE+ +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MRLTFKDLKQAKFTIDAEPSETIGTLKSKIESEKG---WETSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
K+ E F+V M +K K APPT +P T PAP
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------------------APPTKPAEPAT----PAPKS 91
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+VP +AP +AP+ P P+PAPA + S L G A + +
Sbjct: 92 VSTPAVP-AAPAQSAPSNTSQPPATPSPAPASAAGSEGTSWNDPSALALGEQRSAAIANM 150
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
MG + R+ + A+RAA+ NP+RAVEYL +GIP
Sbjct: 151 ESMG---FPRDQIDLAMRAAFFNPDRAVEYLLNGIP 183
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 115/255 (45%), Gaps = 53/255 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQT--TSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K + + +S+ +A T SAP TQ +TT PA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSKAAPSTPAPAPAQTPSAPQAPTQSSTTHNAPATP 117
Query: 119 VAPPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
P E P+A L G EA +
Sbjct: 118 SPAPAQASGERFNDPSA-------------------------------LTMGGEREAAIA 146
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE +A+ A+
Sbjct: 147 NMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPE-SALQEQAQ------------ 190
Query: 238 QTQAQQPAAPAPTSG 252
QTQA+ P +P P G
Sbjct: 191 QTQARAPNSPTPAGG 205
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 129/283 (45%), Gaps = 42/283 (14%)
Query: 27 KKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK-VSSSGAS 85
K+ + QG + A Q L++ GKVL+D T+ ++KV E ++ M+ K K VS
Sbjct: 17 KQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSD---- 69
Query: 86 TVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAP 145
A P + T+ A + T+ T S + A S + + + +
Sbjct: 70 ---AKPETKTSETAGAGKSETKATEASTSTAGN-------ETSTSGNSGTSNTSGVSGSG 119
Query: 146 APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPER 205
+ + A S D G EA++Q I++MG ++R V ALRA++NNP R
Sbjct: 120 SGSGAVTSGGGD--------FALGDEREASIQNIMEMG---YERTQVEAALRASFNNPHR 168
Query: 206 AVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP--- 262
AVEYL +GIPE P ++ A+A G P A ++A A T G +LF
Sbjct: 169 AVEYLLTGIPESLQRPQISNAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAA 224
Query: 263 ----QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
QG G+ +GA + Q + LRT +Q NP+++Q
Sbjct: 225 AAAQQG--ESGAGSGAAGGADQGDDAQLRLLRTALQTNPELIQ 265
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 115/255 (45%), Gaps = 53/255 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQT--TSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K + + +S+ +A T SAP TQ +TT PA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSRAAPSTPAPAPAQTPSAPQAPTQSSTTHNAPATP 117
Query: 119 VAPPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
P E P+A L G EA +
Sbjct: 118 SPAPAQASGERFNDPSA-------------------------------LTMGGEREAAIA 146
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE +A+ A+
Sbjct: 147 NMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPE-SALQEQAQ------------ 190
Query: 238 QTQAQQPAAPAPTSG 252
QTQA+ P +P P G
Sbjct: 191 QTQARAPNSPTPAGG 205
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 128/309 (41%), Gaps = 64/309 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPTPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ A A A A P S L+ G E + Q+
Sbjct: 106 NPQPTDAPATTTPAAPAPAPAAAGGATFNDP------------SALLMGPQGEQVIAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 154 SMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATTA 201
Query: 241 AQQPAAPAPTSGPNANPLDLFP---------------------QGLPNM--GSNAGAGTL 277
PAAPA T G ++LF QGL G G L
Sbjct: 202 PSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNL 259
Query: 278 DFLRNSQQF 286
DFLRN+ F
Sbjct: 260 DFLRNNPHF 268
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 48/230 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P + V VK+ I T +G DV P+ + LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS-QTPAPTV 119
+ E F+V M++K K TQP++ S TPA +V
Sbjct: 58 FYNIEEKGFIVCMVSKPK---------------------------TQPSSQSPSTPAKSV 90
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN----LVAGSNLEAT 175
+ P + P + P PA P+P SS + + N L+ GS E
Sbjct: 91 TSTPAPPPAPAPSTNTSTTATSGPVPA-TPSPASSGAAQSSASTFNDPSALLTGSQSEEV 149
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS---------GIPE 216
+ Q++ MG ++RE + RA+RAA+ NP+RA+EYL + GIPE
Sbjct: 150 INQMMSMG---FEREQINRAMRAAFFNPDRAIEYLLNLLISAFAIKGIPE 196
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 107/235 (45%), Gaps = 48/235 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------------- 47
MKV + LK F +EV+P D +S VK+ I T +G D P Q+++
Sbjct: 1 MKVTFRDLKQQKFTLEVEPTDLISAVKERISTEKGWD--PKHQKLIYSGADEQNPAPTAP 58
Query: 48 -----HQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
GK+LKD T+ + E FVV M+ K K + A+ +AAP +
Sbjct: 59 PFLTNFLGKILKDEETVASYNIEEKGFVVCMVNKPKEKPAAATPSAAAPPATPAQPAQG- 117
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPE-SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
TPA AP QS +A PA P P + A APA G
Sbjct: 118 -----------TPAAPAAPNQSSASLTANIPATPTPNRS---TDATAPA---------GG 154
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
++ L G+ A + + MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 155 DSAGLTMGTERAAAITSMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPE 206
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 25/150 (16%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S+ +++ +A SNLV G++ +A V +++ MG ++RE V+ ALRA++NNP+RAVEYL +
Sbjct: 76 STNTNLIDEAVSNLVTGASYDAMVNEMMLMG---YEREQVVAALRASFNNPDRAVEYLLT 132
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP-NMGSN 271
GIP G+ P A A P P SG ++ P+ LP N GS+
Sbjct: 133 GIP--------------GRDPGPAAGLDAVVP----PVSGVHSAPIGGI--SLPANTGSS 172
Query: 272 -AGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+G L FLR+ QF +R ++Q N +L
Sbjct: 173 PSGGNPLSFLRSQPQFHVMRQLIQQNAALL 202
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 40/233 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GKVLKDVTTL 59
MKV + LK F +EV+P D +S VK+ I +G D P Q+++ GK+LKD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTDLISAVKEKISGEKGWD--PKHQKLIYSGLGKILKDDETV 58
Query: 60 EENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
+ E FVV M+ K K ++ ++ A Q ++ A P + +T+Q+
Sbjct: 59 ASYNIEEKGFVVCMVNKPKEKPAPAAESSAAAPPATPAQPVASTPAVPAAPAQPSTTQSA 118
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
AP PQ E+ G+ S L G+
Sbjct: 119 APATPTPQRSGEAG------------------------------GETGSGLAMGAERAEA 148
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
+ + MG ++R + A+RAA+NNP+RAVEYL +GIPE AR +A
Sbjct: 149 ITNMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHARQAA 198
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 104/230 (45%), Gaps = 36/230 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE +P D +S VK+ + G D PA Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVNFKDLKQQKFTIEFEPTDLISTVKQKLSEDHGWD--PALQK-LIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV M++K K + S++ ++ T P +Q A
Sbjct: 58 SCKIEEKGFVVCMVSKPKAPKPAPAAESSSVVPATPAQAAPASTPAPPAAPAQVSNAASA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + AP + A A A A +N+EA
Sbjct: 118 APATPSPN-RTSGAPNDSSALAMGEQRAQAI------------------ANMEA------ 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARA 226
MG ++R + A+RAA+ NPERAVEYL +GIPE QTA V A
Sbjct: 153 -MG---FERSQIDAAMRAAFFNPERAVEYLLTGIPENVQQQTAAQRVGHA 198
>gi|323305178|gb|EGA58925.1| Rad23p [Saccharomyces cerevisiae FostersB]
Length = 401
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 106/238 (44%), Gaps = 42/238 (17%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGAL 237
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 110/219 (50%), Gaps = 35/219 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G D P Q+ LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTELISAVKEKISAEKGWD--PKLQK-LIYSGKILKDEETVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + + +S+ P T QP + TPA A
Sbjct: 58 SYNIEEKGFVVCMVNKPKPKPAAPAA----------ESSAPPATPAQPI--ANTPAAPAA 105
Query: 121 PPQSVPESAPPPAAPAP---APAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
P QS A PA P P A + AP+ P+ ++ A A +N+EA
Sbjct: 106 PVQSTSHQAAVPATPTPQRSVEAGSGAPSNEPSGLA-------MGAQRAEAIANMEA--- 155
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 156 ----MG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPE 187
>gi|4261672|gb|AAD13972.1|S65964_1111 Unknown [Saccharomyces cerevisiae]
gi|347495|gb|AAA34935.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|347499|gb|AAA34938.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae]
Length = 398
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 106/238 (44%), Gaps = 42/238 (17%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGAL 237
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 129/300 (43%), Gaps = 56/300 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL F IE + D V +K+ I D Y A LI GK+L+D TLE
Sbjct: 1 MQLQIKTLSNEKFAIECELSDTVRTIKEKIAAKDLKDKYEADAVKLIFSGKILEDSKTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ +SF+VV+ +G++ +AAP+N + S+ T T T T AP
Sbjct: 61 FYSITSDSFLVVVKQAPTKPQAGSAAAAAAPSNPSGAASAQTRTPTVATPTPAPAAPQQQ 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + PAPA PA + S ++ + E ++++
Sbjct: 121 PTR---------------PAPASGTTPAASQDS------------FLSAESREKALRELT 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG +DR ALRA++ + ERA EYL +G +P ++ S A NP +
Sbjct: 154 DMG---FDRAQAELALRASFYHVERAAEYLITG-----NIPNISEPS----AANPEGGS- 200
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q P+ ++G G G L L S QFQALR ++Q NP L
Sbjct: 201 GQTPSGSESSTG----------------GRRGGEDDLVELSQSPQFQALRQLIQQNPDQL 244
>gi|398364251|ref|NP_010877.3| Rad23p [Saccharomyces cerevisiae S288c]
gi|418413|sp|P32628.1|RAD23_YEAST RecName: Full=UV excision repair protein RAD23
gi|409247|gb|AAA16070.1| DNA repair protein [Saccharomyces cerevisiae]
gi|603642|gb|AAB65005.1| Rad23p [Saccharomyces cerevisiae]
gi|51013487|gb|AAT93037.1| YEL037C [Saccharomyces cerevisiae]
gi|151944674|gb|EDN62933.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
gi|190405529|gb|EDV08796.1| UV excision repair protein RAD23 [Saccharomyces cerevisiae RM11-1a]
gi|285811588|tpg|DAA07616.1| TPA: Rad23p [Saccharomyces cerevisiae S288c]
gi|323309458|gb|EGA62674.1| Rad23p [Saccharomyces cerevisiae FostersO]
gi|323333880|gb|EGA75269.1| Rad23p [Saccharomyces cerevisiae AWRI796]
gi|349577621|dbj|GAA22789.1| K7_Rad23p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765999|gb|EHN07500.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299909|gb|EIW11001.1| Rad23p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 398
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 106/238 (44%), Gaps = 42/238 (17%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGAL 237
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 89/198 (44%), Gaps = 33/198 (16%)
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNL 166
S TPA T A + P S PA P P + S+ S+++ A S L
Sbjct: 53 SVTPASTTASSEPAPASVTKQEKPAERPVETPVATTPTSTDSTSGDSSRSNLFEDATSAL 112
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
V G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 113 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP 169
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
AS G + A +SG G P L+FLRN
Sbjct: 170 PPTASTGAPQSSVAAAAATTTATTTTASSG-----------GHP----------LEFLRN 208
Query: 283 SQQFQALRTMVQANPQIL 300
QFQ +R ++Q NP +L
Sbjct: 209 QPQFQQMRQIIQQNPSLL 226
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 33/193 (17%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAS 85
VK+ I T +G +PASQQ LI+ GK+L+D T+E + E F+V M++K K + S ++
Sbjct: 11 VKEKIATEKG---WPASQQKLIYSGKILQDDNTVESYNIEEKGFIVCMVSKPKAAPSASA 67
Query: 86 TVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAP 145
S+ A + + S APT A SAP PA P+P
Sbjct: 68 ASSSQTPAAAPSAPAPITPS----------APTRA-------SAPASETPA-----TPSP 105
Query: 146 APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPER 205
A + ++ +D S L+ G+ + + Q+L MG + R + RA+RAAY NP+R
Sbjct: 106 AGGASSGATFND-----PSALLMGNQGQEAITQMLAMG---FSRGDIDRAMRAAYFNPDR 157
Query: 206 AVEYLYSGIPEQT 218
A+EYL +GIPE++
Sbjct: 158 AIEYLLNGIPEES 170
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 91/193 (47%), Gaps = 40/193 (20%)
Query: 126 PESAPPPAAPAPAPAPA---PAPAPAPAPVSSV-------------SDVYGQAASNLVAG 169
P SA + PAP A P PA PV++ S+++ A S LV G
Sbjct: 132 PASATASSEPAPVSATKQENPVEQPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTG 191
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
+ E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 192 QSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP-------------- 234
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGP--NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
G+ +Q P P T+GP ++ +++G L+FLRN QFQ
Sbjct: 235 ---GDRESQAVVDPP--PVATTGPPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQ 289
Query: 288 ALRTMVQANPQIL 300
+R ++Q NP +L
Sbjct: 290 QMRQIIQQNPSLL 302
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 29/216 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G + Q LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WEPKLQKLIYSGKILKDEETVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + S+AP + P + T + +
Sbjct: 58 SYNIEEKGFVVCMVNKPKPKPEPKAAESSAP-------PATPAQAVANTPAAPAAPAHSS 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q+ + P P A A A P S L GS + +
Sbjct: 111 SHQTAVPATPTPQRSVDAGTGAQAEEP----------------SGLAMGSQRTEAIANME 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+NNP+RAVEYL +GIP+
Sbjct: 155 AMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPD 187
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 100/214 (46%), Gaps = 31/214 (14%)
Query: 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENK 63
+ LK F +EV+P D +S VK+ I +G D Q LI+ GK+LKD T+
Sbjct: 689 LAQDLKQQKFTLEVEPADLISAVKEKISAEKGWD---PKHQKLIYSGKILKDEETVASYN 745
Query: 64 VAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQ 123
+ E FVV M+ K K + A+ + AP + TPA AP Q
Sbjct: 746 IEEKGFVVCMVNKPKEKPAAAAPSAVAPPATPAQP------------VTSTPAVPAAPNQ 793
Query: 124 S-VPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S +S PP P+P + + + G A+ L G+ A + + M
Sbjct: 794 SSANQSTAPPVTPSPNRS------------ADAAAPTGADAAGLTMGAERAAAITSMEAM 841
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
G ++R + A+RAA+NNP+RAVEYL +GIP+
Sbjct: 842 G---FERSQIEAAMRAAFNNPDRAVEYLLTGIPD 872
>gi|297811745|ref|XP_002873756.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
gi|297319593|gb|EFH50015.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
Length = 134
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 46/61 (75%), Gaps = 5/61 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIEVKP D KNIETV G+ YPA+QQ+LIH+GK L+D T+E
Sbjct: 1 MKIIVKTLKGTRFEIEVKPNDS-----KNIETVLGASEYPAAQQILIHKGKKLRDEATME 55
Query: 61 E 61
E
Sbjct: 56 E 56
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 107/219 (48%), Gaps = 25/219 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K ++V+ D V K+ + +G D +SQ L++ GKVL+D LE
Sbjct: 1 MQIVFKDFKKQTVTLDVELTDSVLSTKEKLAQEKGCD---SSQIKLVYSGKVLQDDKNLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E + ++ M+ K+K T + P ++ T S++ +T+++ + + +
Sbjct: 58 SYKLKEGASIIFMINKTK------KTPTPVPETKSTTESTSQEQVQAQGSTNESTSSSTS 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN---LVAGSNLEATVQ 177
+ +A AA A + P QA SN GS EA++Q
Sbjct: 112 STTTTTAAAAAAAAGAASTGTTTTSEQQPE----------QAVSNESTFAVGSEREASIQ 161
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 162 NIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPE 197
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 129/315 (40%), Gaps = 93/315 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ E +++VK + + +G D P Q+ LI+ GK+L D T +
Sbjct: 3 LSVAFRTLTQLNFHLELNEEQTIAEVKALVASERGDDYAPELQK-LIYNGKILDDATKVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + FVVVML K KV T+ +P +T+ + AP V
Sbjct: 62 EVGFDSSKFVVVMLAKKKV------------------------TAAEPASTATSSAPVV- 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
E+AP A + A APA ++ S E TV I
Sbjct: 97 -----QENAPSTPAAPAPASIADPVPAAPAAAEQLT-------------SQQEDTVSAIT 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG +DRE I ALRAA+ N +RAVE+L +GIPE
Sbjct: 139 GMG---YDREQTIAALRAAFWNADRAVEFLLTGIPEDVV--------------------- 174
Query: 241 AQQPA---APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q+P APA + +AN L+ L N Q +R M+Q NP
Sbjct: 175 DQEPLLADAPAVENEEDAN------------------DDLNMLANMPQLGEIRNMIQQNP 216
Query: 298 Q----ILQQWALIVP 308
+ +LQQ A + P
Sbjct: 217 EMLAAVLQQLAAVNP 231
>gi|256273801|gb|EEU08724.1| Rad23p [Saccharomyces cerevisiae JAY291]
Length = 398
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 106/238 (44%), Gaps = 42/238 (17%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTEGTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGAL 237
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 28/211 (13%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K + S ++ VS+ + +++ P + + T T P + P
Sbjct: 505 GFIVCMVSKPKPAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDITATPSPAAPV 564
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSW 187
+AP P S L+ G E V Q+ MG +
Sbjct: 565 AAPVAGGSTTFNDP----------------------SALLMGPQGEQVVAQMESMG---F 599
Query: 188 DRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
R + RA+RAAY NP+RA+EYL +GIPE T
Sbjct: 600 PRSDIDRAMRAAYFNPDRAIEYLLNGIPETT 630
>gi|254583708|ref|XP_002497422.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
gi|238940315|emb|CAR28489.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
Length = 384
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 36/216 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +E+ P V D K + T + + SQ LI+ GKVL+D L+
Sbjct: 2 INIIFKDFKKEKISLELDPSSSVKDAKVRLATEKSCE---ESQIKLIYSGKVLQDAKNLQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E+ + + V+ M++K K ++ A+ + A A+ + + SA TT ++T A A
Sbjct: 59 ESGLKDGDQVIFMISKKKAATPSAAAATPASASVTEPSQSA-------TTNTETQAAGSA 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P AP P + V G TV +I+
Sbjct: 112 AETTATAPAQPSTTQAPVSTP-----------------------DFVVGQQRNETVDRIM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+MG ++R+ V RALRAA+NNP+RAVEYL GIPE
Sbjct: 149 EMG---YERDQVERALRAAFNNPDRAVEYLLMGIPE 181
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 75/152 (49%), Gaps = 27/152 (17%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 8 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 64
Query: 213 GIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 268
GIP Q V P PP P +PA +
Sbjct: 65 GIPGDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATTT--------ATT 104
Query: 269 GSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ +G L+FLRN QFQ +R ++Q NP +L
Sbjct: 105 TTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLL 136
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 36/217 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P D++S VK+ I +G + Q LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDQISAVKEKIAAEKG---WEPKTQKLIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K P + AP
Sbjct: 58 SYNIEEKGFVVCMVNK--------------------------PRPAAAAAPAAAAAPPAT 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA-TVQQI 179
P Q VP + PA P PAP+ + AP P + + ++ S V+G + A + I
Sbjct: 92 PAQRVPST---PAVP---PAPSQTSSQAPPPATPTPNRSVESPSGGVSGLAMGAERAEAI 145
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+M ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 146 ANMEAMGFERTQIEAAMRAAFNNPDRAVEYLLTGIPE 182
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 121/310 (39%), Gaps = 101/310 (32%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLK E++V+ V V + IE + + PA Q LIH GK+LK ++
Sbjct: 1 MKLTVKTLKNVQVEVQVQETSTVEAVMEQIEQLLPN--MPAKTQKLIHSGKILKREMQIK 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + V+V+ +K
Sbjct: 59 DYPDIKDGDKVIVIASKV------------------------------------------ 76
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
V SAP P A P P AP S VY +S L+ G L+ V +I
Sbjct: 77 -----VESSAPQPVAKVEEKTPESTPVQQEAPEKS-EPVYDNPSSKLLIGQELQDNVNRI 130
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQ 238
+MG ++R V RA+ AA+NNPERAVE+L +G IPE
Sbjct: 131 CEMG---FERAMVERAMAAAFNNPERAVEFLSTGHIPE---------------------- 165
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-----GAGTLDFLRNSQQFQALRTMV 293
P A +D LP+M + + L++ F+ LR +V
Sbjct: 166 --------------PEAMGMD-----LPSMEHSGDMPRTNEDVIQMLQSHPMFEQLRQVV 206
Query: 294 QANPQILQQW 303
Q++PQ+LQQ
Sbjct: 207 QSDPQMLQQL 216
>gi|145538419|ref|XP_001454915.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422692|emb|CAK87518.1| unnamed protein product [Paramecium tetraurelia]
Length = 331
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 52/214 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G F+IEV+P + V ++K+ IE + + +QQ L+ +G +L++ T+
Sbjct: 1 MKIIIKTLSGQTFDIEVQPTETVLNIKEKIEQ---NKQFEIAQQKLLRKGTLLQNEQTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+ K Q P Q
Sbjct: 58 ELGLQEKDFLVVMVNVKKGPPQQQPVQQQVQQPPQQPQPVQPQQPIQ------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A P APAP N+V GS +A +Q ++
Sbjct: 105 ---------------------AFKPVVAPAP------------QNMVTGSEYDAAIQNLI 131
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
MG + E A++AAYNNP+RA+EYL +GI
Sbjct: 132 QMGFAKSECEA---AMKAAYNNPDRAIEYLLNGI 162
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 50/230 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK ++V P D + K+ + TV+ SD AS+ ++ GKVL+D +
Sbjct: 1 MKIVFKDLKKEKVILDVDPTDTILSAKEKLATVKNSD---ASKIKFVYSGKVLQDDKDFD 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV EN ++ ML P+ +
Sbjct: 58 AFKVKENDVIIFML---------------------------------PSVFKKE------ 78
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA--PAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P+++ + + AP A P PV++ AS G++ E ++
Sbjct: 79 EPKNLENRIDKTSTESSKTTTIAAPGIAVPPVPVNTSGSF---NASTFAVGNDRENAIRN 135
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
I++MG +DR V ALRAA+NNP+RAVEYL +G+P P SA
Sbjct: 136 IMEMG---YDRSQVEAALRAAFNNPDRAVEYLLTGLPVNNEEPIAGSRSA 182
>gi|156837209|ref|XP_001642636.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113188|gb|EDO14778.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 404
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V D KK I + + SQ LI+ GKVL++ +T+ + + + V+ M++K K S+
Sbjct: 24 VLDAKKQIAVKKDCE---DSQIKLIYSGKVLQNDSTIGDCGLKDGDQVIFMISKKK--ST 78
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
G A P + ++ + Q TVA Q+ + A P A
Sbjct: 79 GTKVTEATPVAASTAADASATSVAAVAEPEQ---QTVASEQATESNGNEEA---PQQEEA 132
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P V SD V GS V++I++MG ++R+ V RA+RAA+NN
Sbjct: 133 PQQGGQQEQVQVQSD------EGFVVGSQRNEAVERIMEMG---YERDEVNRAMRAAFNN 183
Query: 203 PERAVEYLYSGIPEQ 217
P+RAVEYL GIPE
Sbjct: 184 PDRAVEYLLMGIPEH 198
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 143 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 199
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P A+ G + A +SG G P
Sbjct: 200 GDRESQAVVDPPPAATTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----- 243
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQIL 300
L+FLRN QFQ +R ++Q NP +L
Sbjct: 244 -----LEFLRNQPQFQQMRQIIQQNPSLL 267
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 134/306 (43%), Gaps = 83/306 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTLK E+EV V D+ K +E + + A+ Q LIH GK+LK L
Sbjct: 1 MNLKVKTLKNVEVEVEVAESATVEDLMKRVEELLPN--MQANSQKLIHAGKILKRELLLS 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA---PPTSTQPTTTSQTPA 116
+ + E ++V+ S T SA PA ++SA PP T SQ
Sbjct: 59 DYPDIKEGDKIIVI--------SSKKTESAKPAEPKLDSTSAVATPPKVETATENSQ--- 107
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
++P +A P + +P+ S LV GS L+ +
Sbjct: 108 -------NLPRTATPNVSQESHQSPS---------------------SRLVMGSELDQNI 139
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I +MG +DR +V RA+ AA+NNPERAVE+L +G +P V + G Q N P
Sbjct: 140 NRICEMG---FDRASVERAMAAAFNNPERAVEFLSTG-----NIPSVNLENPGTQ--NTP 189
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
A+ QA+ NA D+F L++ F+ +R VQ++
Sbjct: 190 AE-QAE-----------NAGGEDVFR----------------MLQSHPMFEQIRQAVQSD 221
Query: 297 PQILQQ 302
PQ+LQQ
Sbjct: 222 PQLLQQ 227
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 137/314 (43%), Gaps = 40/314 (12%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVT 57
M++ KTL + ++ + P+ V ++K+ + + PA Q LI G+VL D T
Sbjct: 1 MRLTFKTLDNKNLSLDGISPDTTVEELKRELGGREEFRWDPARTQEARLIFAGRVLSDPT 60
Query: 58 -TLEENKVAENSFVVVM--LTKSKVSSSGASTVSAAPAN-----QAQTTSSAPPTSTQPT 109
L + + ++ F+VVM ++ S AS VS+A A QA S A ++T +
Sbjct: 61 QKLADCGMQDDDFLVVMPPRVATQRSRKTAS-VSSADAQLKTPLQAGLASEATDSATIAS 119
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
S+ P +PP SV +A + PA + A + P + G A+S L G
Sbjct: 120 EASRG-IPADSPPASV-------SAKSSGATPAESGALSQTPQVEGTTTSGIASSGLAVG 171
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA--VPPVARAS 227
+ ++ DMG +D ++ RA+RAA+ NPERA+EYL +G P T P+ +
Sbjct: 172 DEYSLYMNRMRDMG---FDDGSIERAMRAAHYNPERAIEYLCNGFPANTESLTEPLNDEA 228
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
+ PAQ Q + PA P LD +R F
Sbjct: 229 RRPEHQTLPAQAGMDQTSRPAEAVHPELQQ---------------SRSELDIIRRLPHFA 273
Query: 288 ALRTMVQANPQILQ 301
LR +Q +P +Q
Sbjct: 274 LLRRAIQQDPSQIQ 287
>gi|357504261|ref|XP_003622419.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
gi|355497434|gb|AES78637.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
Length = 176
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 45/65 (69%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
++ DVK NIE +Q D YP QQ+LIH GKVLKD TTL +N+V+E+ F+VVML+K S
Sbjct: 76 EIMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKVNNRS 135
Query: 82 SGAST 86
G
Sbjct: 136 MGGEC 140
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 90/216 (41%), Gaps = 32/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K K F IEV+P D + K+ + Q D P Q ++ GK+LKD T E
Sbjct: 1 MKVIFKNFKKEKFPIEVEPSDSILSGKEKLSAAQ--DCQPG-QLKFVYSGKILKDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V + ++ M +K + S P +AQ S+
Sbjct: 58 FFNVKDGDQIIFMKSKLRKQKS-----KPEPKPEAQAXXGXAEXSS-------------- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
E+A ++ PA A SS S G + VQ I+
Sbjct: 99 ------ENAAVESSSTSNXXSXPAQIXAENQESSTG-AXEFTESTFAIGRARQTAVQNIM 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++RE V RAL AA+NNP+RAVEYL +GIPE
Sbjct: 152 GMG---FEREQVERALTAAFNNPDRAVEYLLNGIPE 184
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 127/313 (40%), Gaps = 85/313 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-----YPASQQM-LIHQGKVLK 54
MKV VK++ G +FE+E+ V D+KK I V+ DV +S+ M +I QGK+L
Sbjct: 1 MKVKVKSIAGDNFEVEIGGSSTVFDLKKAISEVKRYDVTDEMLRDSSKGMKIILQGKILD 60
Query: 55 DVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
D +QT SS P +
Sbjct: 61 D---------------------------------------SQTISSLGP---------KI 72
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA 174
+ PP+ V + P PA V+S G + ++ G +LEA
Sbjct: 73 SFFVMMPPEGVTLKKVEVSKPQDQPA-----------VTS-----GLQNNTILMGEDLEA 116
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
+V++I MG + V RALR A+NNP+RAVE LY+G + A+ Q
Sbjct: 117 SVREICGMG---FAESEVRRALRLAFNNPDRAVEILYNGASDD------AQQMQNEQPAE 167
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--TLDFLRNSQQFQALRTM 292
Q Q P AP+ S P +D L S AGAG L+ LR QF +R
Sbjct: 168 QQQQQQGASPEAPSHGSMPLRFNMD----ALAVNASEAGAGGNQLEMLRRDPQFAFVRHC 223
Query: 293 VQANPQILQQWAL 305
VQ+ P +L + L
Sbjct: 224 VQSQPSLLPELLL 236
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 91/216 (42%), Gaps = 31/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLISAVKQKIAGEKGWD--PKDQK-LIYSGKILKDDDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV M+ K K + S+
Sbjct: 58 SYKIEEKGFVVCMVNKPKAPKPAPAESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S A + P+ A G ++A N+EA
Sbjct: 118 XXXXAPRSTGGGDAASNDPSMA----------------MGAQRQEVIA--NMEA------ 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 154 -MG---FERSQIDAAMRAAFYNPDRAVEYLLNGIPE 185
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 72/158 (45%), Gaps = 51/158 (32%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 79 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 129
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
S + G+ +QPA A AG L+FLR
Sbjct: 130 ----GSPEPEHGSVQESQVPEQPAVEA-----------------------AGENPLEFLR 162
Query: 282 NSQQFQALRTMV---------------QANPQILQQWA 304
+ QFQ +R ++ Q NPQ+LQQ +
Sbjct: 163 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQIS 200
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 24/218 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE++P + ++ VK+ I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVIEIEPSETIAAVKQKISDERG---WAPKTQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + S+ +A+P+ A+ ++ A + + + A
Sbjct: 58 SYKIEEKGFVVCVVNKPKPAPVAESSSAASPSTPARASAVAATPAAPAAAAAASSAAIAQ 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + P PAA A P A + SV +A +N+ A
Sbjct: 118 AAVA---ATPSPAARAAGPTAGGATSYTDPNSFSVGPALQEAITNMEA------------ 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS--GIPE 216
MG ++R + A+RAAYNNP+RAVEYL + GIP+
Sbjct: 163 -MG---FERSQISAAMRAAYNNPDRAVEYLLTLQGIPD 196
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS + +AAS LV GS+ EA V I++MG + RE V+RALRA++NNP RAVEYL +
Sbjct: 121 SSGGSIESEAASALVTGSDFEAMVSNIMEMG---FPREEVLRALRASFNNPNRAVEYLMT 177
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN--MGS 270
GIP+ A P + A+ A + A+ + PA P L MG
Sbjct: 178 GIPDMPAQAPASPAAERAAAPAAGGEGAAEPGSPPAAGGEGAGEGGISLPSNLLGALMGQ 237
Query: 271 NAGA-GTLDFLRNSQQFQALRTMVQ---------------ANPQILQ 301
GA G ++LR QF ++ MVQ NPQILQ
Sbjct: 238 QGGAGGHFEWLRQHPQFNQIKAMVQRNPQLLGPLLQQLGQLNPQILQ 284
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 129/310 (41%), Gaps = 63/310 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ V VKK +E D Y L + G +L++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAILENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQPTT 110
E V EN+ ++ K + A ++AP Q +T SS PTS T P T
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSAPPPQTKTNSSFEPTSVGRGQWEGAITDPAT 115
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
S +S + PPP+ AP+ A ++G +
Sbjct: 116 -SGAGGAPGGIAESRQGAEPPPSEAAPSQGLA---------------LHGIDPT------ 153
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 230
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 154 ----LVDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL----------- 196
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q N PA P+ +S ++ D + ++ + + L QF +R
Sbjct: 197 QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEIR 247
Query: 291 TMVQANPQIL 300
++VQANP+ L
Sbjct: 248 SIVQANPESL 257
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 132/311 (42%), Gaps = 65/311 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ V VKK +E D Y L + G + ++ T+
Sbjct: 1 MKIILRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQPTT 110
E V EN+ ++ K + A ++ P QA+T SS PTS T+P T
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSLPPPQAKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 111 TSQTPAPT-VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+ AP + P+ E PPP+ AP+ A ++G +
Sbjct: 116 SGAGGAPGGITEPRQGAE--PPPSEEAPSQGLA---------------LHGVDPT----- 153
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 154 -----LVDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL---------- 196
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q N PA P+ +S ++ D + ++ + + L QF +
Sbjct: 197 -QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEI 246
Query: 290 RTMVQANPQIL 300
R++VQANP+ L
Sbjct: 247 RSIVQANPESL 257
>gi|157872825|ref|XP_001684939.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
gi|68128009|emb|CAJ06783.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
Length = 425
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 104/221 (47%), Gaps = 23/221 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSMMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST------QPTTTSQT 114
+ V +N +V+ K K+ A + P +A SSAP +ST P T+ +
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAETPTTEAAPESSAPASSTPPPAMSAPALTTTS 115
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA 174
PA + AP + P AA PA AP +S ++ YG A NL
Sbjct: 116 PATSAAPVDPPAPAVPTAAAAPVTSTTPAGPAVPAAPAASTTNTYG-VAPNL-------- 166
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+ ++ M G DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 167 -IDEVASM--GFEDRSQIALALRAAFMNVERAVEYLFEGIP 204
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KTL+ T F+IE+ P V +K+ IE +G D YPA Q LI+ GK+L DV+ L
Sbjct: 1 MLVTFKTLQNTTFQIEIDPSSTVKTLKEKIEKEKGVD-YPAVGQKLIYAGKILDDVSVLS 59
Query: 61 ENKVAENSFVVVMLTKSKVS 80
E+ + E F+V+M+TK K S
Sbjct: 60 EHGIDEKKFIVIMVTKPKAS 79
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 152/369 (41%), Gaps = 130/369 (35%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ + LK F I+ +P + + +K+ I +G D A+QQ LI+ G
Sbjct: 1 MKLSFRDLKQQKFTIDAEPSETIGQLKEKIAQEKGWD---AAQQKLIYSGELHFERHLRL 57
Query: 51 ---------------KVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQA 95
K+L++ T+E + E FVV M++K K
Sbjct: 58 ARDLNLLSDVRPSTGKILQNANTIESYNIEEKGFVVCMVSKPK----------------- 100
Query: 96 QTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV 155
TQP + TPA P Q PPA PAPA PA APAP ++
Sbjct: 101 ----------TQPAPS--TPA---GPSQ-------PPATPAPAQTSTPAAPSAPAPATND 138
Query: 156 SDVY--------GQAA-----SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
G AA S L+ GS EA VQ++ MG + R + RA+RAA+ +
Sbjct: 139 PSAPPATPSPAGGDAAAFNNPSTLLMGSQSEAAVQEMEAMG---FPRADIDRAMRAAFFH 195
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPA-------PTSGPNA 255
P+RA+EYL +GIP+ T P AR +QP+APA P++ P A
Sbjct: 196 PDRAIEYLLNGIPD-TPEQPAAR----------------EQPSAPAQSNVPVPPSNQPAA 238
Query: 256 N-----PLDLFPQGLPNMGSNAGAGT------------------LDFLRNSQQFQALRTM 292
N P++LF GT LDFLRN+ FQ LR +
Sbjct: 239 NAEPDEPINLFEAAAQAAQGGGARGTRTAGASLGGAAGGEGLSNLDFLRNNPHFQQLRQL 298
Query: 293 VQANPQILQ 301
VQ P +L+
Sbjct: 299 VQQQPGMLE 307
>gi|46015810|pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS 82
E K+ E +FVVVM+TK K S+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVST 82
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 120/256 (46%), Gaps = 57/256 (22%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q + TP P +A P S P S
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQ----APTPVPALA-PTSTPASIT 55
Query: 131 PPAAPAPAPAPA--------PAPAPAPAPV-------------SSVSDVYGQAASNLVAG 169
P +A A + + PA PA PV SS S+++ A S LV G
Sbjct: 56 PASATASSEPASASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTG 115
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVA 224
+ E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A
Sbjct: 116 QSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQA 172
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
++ Q+ A +SG G P L+FLRN
Sbjct: 173 ASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQP 211
Query: 285 QFQALRTMVQANPQIL 300
QFQ +R ++Q NP +L
Sbjct: 212 QFQQMRQIIQQNPSLL 227
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 100/217 (46%), Gaps = 29/217 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEERGWD---PKHQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + S++ A A + T P Q + A
Sbjct: 58 SYKIEEKGFVVCVVNKPKEPKPAPAAESSSSAAPATPAPAQSSTPAAPAAPVQASSTATA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + + APA +++ + A +N+EA
Sbjct: 118 APATPTPNR----------------SAAPATLATDPNQLAMGEQRAEAIANMEA------ 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
MG ++R + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 156 -MG---FERSQIDAAMRAAFFNPDRAVEYLLNGIPEH 188
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 136/304 (44%), Gaps = 84/304 (27%)
Query: 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTT 58
MK+ +KTLKGT F++ ++ V+++K+ I T + + L+H+GK L +D T
Sbjct: 1 MKINIKTLKGTDFFDVNLEETATVAELKEKIATEKQKEKDTIK---LVHKGKQLTEDSKT 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L E + +N FV++M + K A A ++ TTS+A T+T PTT P P
Sbjct: 58 LGELGIKDNDFVILMFFQKKAEKEDAP--QQAQSDTTSTTSAASTTATNPTTV---PKPA 112
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
V+ P + ++ S+L+ G LEA +++
Sbjct: 113 VSQPATTQQTGSQGTG-----------------------------SDLLQGPELEAKIKE 143
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPA 237
I MG ++R V++AL+AAY NPERAV+YL SG IP++ P+
Sbjct: 144 IESMG---FERPKVLQALKAAYYNPERAVDYLLSGNIPKE------------------PS 182
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q Q+ PL QGL G L L + QFQ + ++ NP
Sbjct: 183 QQQS---------------PL----QGL----QGPGVEQLAQLAQNPQFQHIAQAIRQNP 219
Query: 298 QILQ 301
+LQ
Sbjct: 220 ALLQ 223
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 135/306 (44%), Gaps = 59/306 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V +QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQADKGWEV---TQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSF--VVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ E F +V K+ +++ AS+ A P+ TPAP
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAAAAASSSRAVPS---------------------TPAPV 96
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A ++ P+APAP+ P APA + S S L G EA +
Sbjct: 97 AA------QTPAAPSAPAPSSNPQNAPATPSPAPAQASGERFNDPSALTMGGEREAAIAN 150
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE +A A PA
Sbjct: 151 MESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQAQQAQARAPTSPTPAG 207
Query: 239 TQAQQPAAPAPTSGPNA--NPLDLF-----------PQGLPNMGSNAG--------AGTL 277
A AP + P+ P++LF P G GS G A +L
Sbjct: 208 NTG---ATAAPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGSAPGATGGGALNANSL 264
Query: 278 DFLRNS 283
DFLRN+
Sbjct: 265 DFLRNN 270
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 97/214 (45%), Gaps = 15/214 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT-PAPTV 119
+ ++ F+ +M+ K + A + AP+ TT ST +T P +
Sbjct: 58 SYNITDSGFIXMMIKKPR----EAPATTPAPS----TTPHLNYISTNHHHYCRTNPNHXL 109
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S P PA + S S Q +S+ G+ LEAT++ I
Sbjct: 110 TNNTSTTTPTSVPTPTNNTPATPNPTPTTSSTPGSTSTTSPQQSSDFATGTELEATIKNI 169
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
DMG + R+ V+RALR +NN ERA+EYL SG
Sbjct: 170 TDMG---FARDQVLRALRLTFNNAERAIEYLVSG 200
>gi|159162808|pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 61 ENKVAENSFVVVMLTKSKVSSS 82
E K+ E +FVVVM+TK K S+
Sbjct: 64 EYKIDEKNFVVVMVTKPKAVST 85
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 102/216 (47%), Gaps = 27/216 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K LK F I+ +P + VS +K+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKITIKDLKQQRFTIDAEPTELVSALKQKISDERGWD--PKLQK-LIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + S+A A A + T P +QT A
Sbjct: 58 SYKIEEKGFVVCVVNKPKEPKPAPAAESSASAAPATPAPAQTATPAAPAAPAQTAGTPAA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + S A P + A GQ + +A NLEA
Sbjct: 118 APATPTPSRTAAAEPGVGVGDSNTLA------------IGQERAEAIA--NLEA------ 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+ NPERAVEY+ +GIPE
Sbjct: 158 -MG---FERSQIDAAMRAAFYNPERAVEYILNGIPE 189
>gi|258644511|dbj|BAI39766.1| osRAD23-like [Oryza sativa Indica Group]
gi|258644734|dbj|BAI39979.1| osRAD23-like [Oryza sativa Indica Group]
Length = 88
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 37/45 (82%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ P +A
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQAEAPAAVQA 45
>gi|34015239|gb|AAQ56432.1| putative DNA repairing protein [Oryza sativa Japonica Group]
gi|35210523|dbj|BAC92639.1| unknown protein [Oryza sativa Japonica Group]
gi|35215224|dbj|BAC92575.1| unknown protein [Oryza sativa Japonica Group]
Length = 88
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 37/45 (82%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ P +A
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQAEAPAAVQA 45
>gi|355715047|gb|AES05207.1| RAD23-like protein A [Mustela putorius furo]
Length = 182
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 63/101 (62%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPP 103
++ E +FVVVM+TK+K S + A+P ++++S PP
Sbjct: 82 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPP 122
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 98/217 (45%), Gaps = 37/217 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G + Q LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WQPQLQKLIYSGKILKDDETVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K PT +++ A A
Sbjct: 58 SYNIEEKGFVVCMVNKPK-----------------------------PTKPAESSAAPPA 88
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P A A A PA P P S +D + S L GS + +
Sbjct: 89 TPAAPPTRTPAAPAAPAQSASQQAAVPATPTPQRS-ADAGSEEPSGLAMGSQRTEAIANM 147
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+NNP+RAVEYL +GIP+
Sbjct: 148 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPD 181
>gi|366995773|ref|XP_003677650.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
gi|342303519|emb|CCC71299.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
Length = 392
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 35/225 (15%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D TLE+ + + V+ M++K K +++ + ++ A TT++
Sbjct: 40 SQIKLIYSGKVLQDAKTLEDCGLKDGDQVIFMISKKKSTTTKVTEAPSSTTATAPTTTTN 99
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
T+T + PAA + PA PA A +S +
Sbjct: 100 SATNTPAEVS--------------------PAAASETPAQLPATTEAAPATTSSGETSSA 139
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----- 216
++ V GS + TV++I++MG ++RE V ALRAA+NNP+RAVEYL GIPE
Sbjct: 140 GSAGFVVGSQRDQTVERIMEMG---YEREQVESALRAAFNNPDRAVEYLLMGIPENLQAR 196
Query: 217 -----QTAVPPVAR--ASAGGQAGNPPAQTQAQQPAAPAPTSGPN 254
+TA P + + + + PA+ AA +GPN
Sbjct: 197 AAAPQETAAPSITQDVTTTTASTEDAPAEEDLFAQAAQGSNTGPN 241
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 137/314 (43%), Gaps = 48/314 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL F +E V D+K ++ + V P QQ LI+ G+VL + L+
Sbjct: 1 MKLTIKTLDQKTFYVEFDDTRTVWDLKSHLHKLPEVGVQPELQQ-LIYAGRVLDNDNALK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+VVM K+ S++ V+A +T + T P+ ++T T
Sbjct: 60 TYSIDERKFLVVMAKKAPPSAAAKEEVAA-----IKTAKPSEQTRASPSAAAETIKKTEE 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ-AASNLVAGSNL------- 172
P + PPPAA A A A A P++ ++ N++ +
Sbjct: 115 PKRQEKAKTPPPAAQAAASPAATPAATETQPLALDQELQQNPQHRNILEAMDFSPTAAAS 174
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ-TAVPPVARASAGGQ 231
E+ VQ+I+ MG D V RAL A++NNP+RA+EYL GIP+ A+PP+
Sbjct: 175 ESLVQEIMSMGYAEAD---VRRALLASFNNPDRAIEYLIEGIPDFPEALPPL-------- 223
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLD-----LFPQGLPNMGSNAGAGTLDFLRNSQQF 286
PT P+ NP+ G G L+FLR +F
Sbjct: 224 -----------------PTIQPDVNPVSGVTVAGIGSGGGGGGGGGAGSPLNFLREDPRF 266
Query: 287 QALRTMVQANPQIL 300
+R +++ P++L
Sbjct: 267 IQMRRVIRQRPELL 280
>gi|357501513|ref|XP_003621045.1| RAD23-like protein [Medicago truncatula]
gi|355496060|gb|AES77263.1| RAD23-like protein [Medicago truncatula]
Length = 142
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 133 AAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETV 192
+AP+ A P A + YG+A SNL+AGS LE T+QQI D+G R+ V
Sbjct: 36 SAPSKKAIRPKARHPQGAASRMLLGTYGKAESNLIAGSTLEPTIQQI-DIGR-KLVRDIV 93
Query: 193 IRALRAAYNNPERAVEYLY 211
IRAL AAYNNPER VEYLY
Sbjct: 94 IRALSAAYNNPERTVEYLY 112
>gi|238567698|ref|XP_002386292.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
gi|215437819|gb|EEB87222.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
Length = 161
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 37/196 (18%)
Query: 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74
++ +P D V +K IE G +P + Q +I+ GK+L D T+E + E F+V+M+
Sbjct: 1 VDAEPSDTVGAIKSKIEAAHG---HPVASQKVIYSGKILADDKTIESCGIKEKDFLVLMV 57
Query: 75 TKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA 134
+K P T TTS TPAP +
Sbjct: 58 SK--------------------------PKPTPAATTSSTPAPATPVAAPPTSESSSTTT 91
Query: 135 PAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIR 194
AP PA AP + PA + D S+ ++GS L+ T+ +++MG + ++ V+R
Sbjct: 92 TAPPPAAAPVSSTEPAQQRAFGDT-----SSFLSGSALQDTINNMVEMG---FPKDQVLR 143
Query: 195 ALRAAYNNPERAVEYL 210
ALRA++NNP+RAVEYL
Sbjct: 144 ALRASFNNPDRAVEYL 159
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 18/95 (18%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S + G+ L+ T+Q +++MG +DRE V+RALRA+YNNP+RAVEYL +GIP
Sbjct: 145 SGFLTGAALQTTIQNMMEMG---FDREQVLRALRASYNNPDRAVEYLMTGIP-------- 193
Query: 224 ARASAGGQAGNPPAQTQAQQ--PAAPAPTSGPNAN 256
A +A PP + Q PAAP S P +N
Sbjct: 194 --AHLEAEAAGPPRTSSTTQSNPAAP---SAPQSN 223
>gi|363751284|ref|XP_003645859.1| hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889493|gb|AET39042.1| Hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
Length = 443
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 13/222 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ P +++ K+ + + D SQ +I GKVL+D TL+
Sbjct: 3 ITINFKDFKKEKLPLQLSPTATIAEAKQLLAKEKQCD---ESQLKMIFSGKVLQDGHTLD 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K K + S + + + + T +A P ++S T
Sbjct: 60 ACKLKDGDQVIFMISKKKTGTL-MSPAATTTSTETKVTEAAAPGIRAVESSSDKAKKTAG 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +A +A A A A P S+ D V GS T+++I+
Sbjct: 119 APEGTAMAATTSSAVAAVDAGAAQPTNTTGSDSNPPD------HGFVTGSQRNETIERIM 172
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 222
+MG ++R V ALRAA+NNP+RAVEYL GIPE P
Sbjct: 173 EMG---YERSQVESALRAAFNNPDRAVEYLLMGIPEHLQAAP 211
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Gallus
gallus]
Length = 214
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 69/153 (45%), Gaps = 50/153 (32%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 11 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------- 56
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
+A PP Q +++ P P P NP L+FLR QF
Sbjct: 57 -GSPEAERPPVQ-ESRAPEQPQVEGQPGENP-------------------LEFLREQPQF 95
Query: 287 QALRTMV---------------QANPQILQQWA 304
Q +R ++ Q NPQ+LQQ +
Sbjct: 96 QNMRQVIQQNPALLPALLQQLGQENPQLLQQIS 128
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 129/311 (41%), Gaps = 65/311 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ + VKK +E D Y L + G + ++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNIETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQP-T 109
E V EN+ ++ K + A ++ P Q +T SS PTS T+P T
Sbjct: 56 ELGVQENAVFIIAGNKRNKNKPQAKPATSVPPPQTKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+ + + + PQ E PPP+ AP+ A + V N++A
Sbjct: 116 SGAGGASGGITEPQQGAE--PPPSEAAPSQGLA------------LHGVDPTLVDNIIAM 161
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
G DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 162 ---------------GFEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL---------- 196
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q N PA P+ +S ++ D + ++ + + L QF +
Sbjct: 197 -QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEI 246
Query: 290 RTMVQANPQIL 300
R++VQANP+ L
Sbjct: 247 RSIVQANPESL 257
>gi|255712183|ref|XP_002552374.1| KLTH0C03410p [Lachancea thermotolerans]
gi|238933753|emb|CAR21936.1| KLTH0C03410p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
V GS + TVQ+I++MG +DRE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 135 FVTGSRRDETVQRIMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPEH 183
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S + G+ L+ T+Q +++MG +DRE V+RALRA+YNNP+RAVEYL +GIP
Sbjct: 147 SGFLTGAALQTTIQNMMEMG---FDREQVLRALRASYNNPDRAVEYLMTGIP 195
>gi|367011717|ref|XP_003680359.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
gi|359748018|emb|CCE91148.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
Length = 368
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 46/171 (26%)
Query: 46 LIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS 105
LI+ GKVL+D +L+E+ + + V+ M++
Sbjct: 44 LIYSGKVLQDSKSLQESGLKDGDQVIFMIS------------------------------ 73
Query: 106 TQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN 165
++ TV PQS SAP +PAP + PA A SS +D
Sbjct: 74 -----KKKSTTTTVTEPQSKETSAPVSQSPAP-QSETPA-AETQQEASSTTD------PG 120
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
V G+ V++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 121 FVVGAQRNEAVERIMEMG---YEREQVDRALRAAFNNPDRAVEYLLMGIPE 168
>gi|259155371|ref|NP_001158747.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223646842|gb|ACN10179.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223672703|gb|ACN12533.1| UV excision repair protein RAD23 homolog B [Salmo salar]
Length = 131
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ P+ V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT 98
+ K+ E +FVVVM++K+K S++ AST S+ NQ T
Sbjct: 61 DYKIDEKNFVVVMVSKAK-STTAASTPSSEAPNQLFCT 97
>gi|298707279|emb|CBJ25906.1| UV excision repair protein RAD23B homolog [Ectocarpus
siliculosus]
Length = 466
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ VKT+KG F+IEV+ V +VK IE +PA+Q LIH G++LKD TL
Sbjct: 2 VKLTVKTIKGKKFQIEVEQTQTVREVKGVIEEQNAE--FPAAQLKLIHSGQILKDECTLA 59
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E F+V M+TK
Sbjct: 60 EYKIKEEEFLVCMVTK 75
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+ G+ L ATVQ I++MG ++RE V RALRA+YNNPERAVEYL++GIP
Sbjct: 144 FLTGAALNATVQNIMEMG---FEREQVQRALRASYNNPERAVEYLFNGIP 190
>gi|401425983|ref|XP_003877476.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493721|emb|CBZ29011.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 429
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 106/231 (45%), Gaps = 39/231 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLLE-----DEYEPASLRLCFNGAVLEDSKMLA 55
Query: 61 ENKVAENSFVVVMLTKSKV------SSSGASTVSAAPANQAQTTSSAPPTSTQP------ 108
+ + +N +V+ K K+ S+ S AAP SSAP +S P
Sbjct: 56 DAGIKDNDSLVLAGRKRKIPKPPAPQSAEPSKTEAAPE------SSAPASSATPPPAMST 109
Query: 109 ----TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAAS 164
TT+ T A V PP +A A A APA AP +SV++ YG A
Sbjct: 110 PVLATTSPATSATPVDPPAPAVPTAATAPAAPVASTTPAAPAVPAAPAASVTNTYG-VAP 168
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
NL + ++ M G DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 169 NL---------IDEVASM--GFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 127 ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGS 186
ES P A AP+ + AP+ A + S Q S L + VQQ++++GGG
Sbjct: 316 ESGQPGTASAPSGSAAPSTGQAVVGDAEGSSFMNQLQSGLELTAEDRTAVQQLVELGGGM 375
Query: 187 WDRETVIRALRAAYNNPERAVEYLYS--GIP 215
WD ++ + A N E A L+ G+P
Sbjct: 376 WDEQSAVLVYLATQRNQEVAASVLFEHGGVP 406
>gi|323355384|gb|EGA87208.1| Rad23p [Saccharomyces cerevisiae VL3]
Length = 335
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 58/112 (51%), Gaps = 16/112 (14%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P +
Sbjct: 79 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQ 135
Query: 226 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
+A A T A+QPA DLF Q G NA +G L
Sbjct: 136 QTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGAL 174
>gi|328865495|gb|EGG13881.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 204
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 36/213 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + +V ++ V+++K + +Q + AS Q LI+ GKVL++ L
Sbjct: 1 MKITIKNINKEVYTFDVTGDESVTELK---QLIQNKHSHQASWQTLIYGGKVLENDNKLS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ EN F+V M+ K K +T ++ P + QP TT
Sbjct: 58 TYNITENGFLVCMVKKPK----------------EETVATTAP-AVQPATT--------- 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + PA P PAP P + S S+ + G EA + ++
Sbjct: 92 -----PVAPTSAPSTTPASTSTPTNTPAPTPSPASSTSPSGGNSSFIVGPEYEAAITNLM 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
+M G +RE VIRALRA++NN ERA + L SG
Sbjct: 147 EMSGA--NREMVIRALRASFNNAERAADILLSG 177
>gi|343428884|emb|CBQ72429.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Sporisorium reilianum SRZ2]
Length = 434
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
+ G LE+ +Q +++MG ++R+ V RA+RAA+NNP+RAVEYL +GIPE A PP A
Sbjct: 158 FLTGGALESAMQSMMEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEHLANPPAA 213
>gi|340054316|emb|CCC48612.1| putative UV excision repair RAD23 protein, fragment, partial
[Trypanosoma vivax Y486]
Length = 299
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 124/312 (39%), Gaps = 60/312 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +K + G E EV E V D+KK +E D Y + + +VL+D T+E
Sbjct: 1 MRVILKGIDGIKHEYEVAAEATVHDIKKLME-----DEYTLESLRICYDNRVLEDSMTME 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + +V + K + + +T A ++ SA S Q S +
Sbjct: 56 GLGMRDRTVLVFVGRKHEKKTMSTATDVATKPSEGSARVSASSQSGQVNVESVPQSTATE 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQSV + PP+A + P ++ G + A + ++
Sbjct: 116 VPQSVAHN--PPSASSTETNP------------------------MLRGVD-PALIDTVV 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG DR V ALRAAY N +RAVE+L SGIP + P
Sbjct: 149 SMG--FEDRTQVALALRAAYMNVDRAVEFLCSGIPSNVE-----------RDLGPVFHDD 195
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+Q P P+S A P + +G+ L +F+ +R +V+ANPQ +
Sbjct: 196 SQHGMFPIPSSMAPAAPTE-----------GSGSALEQALMAVPRFEEIREIVRANPQAI 244
Query: 301 ----QQWALIVP 308
QQ L P
Sbjct: 245 ASAVQQLQLHYP 256
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 52/215 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G FE+EV+P D V ++K+ IE V+ + +QQ L+ +G +L D T+
Sbjct: 1 MKIIIKTLSGQTFELEVQPTDSVLNIKEKIEKVKQ---FEIAQQKLLRKGTLLVDDQTVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+VVM+ K A Q P +
Sbjct: 58 DLGIQEKDFLVVMVNVKKGPPQQQPVQQQAQQPPQQPQPVQPQQPIE------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P P + + + S+ Y QA NL+
Sbjct: 105 -------------------VPKPLNNPTTSNMVTGSE-YDQAIQNLIQ------------ 132
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
MG + E A++AA+NN RA+EYL +G+P
Sbjct: 133 -MGFAKSECEA---AMKAAFNNQNRAIEYLLNGLP 163
>gi|326427437|gb|EGD73007.1| hypothetical protein PTSG_04716 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 92/215 (42%), Gaps = 46/215 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VK++K FE+E V +K+ I + SD Q LI G++LKD LE
Sbjct: 1 MKVTVKSMKAGTFEVEADISKPVRLIKEAIYAEKKSDDLHPDAQRLIFSGRLLKDDDVLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN F+VVM G ++ PA + T+S + + +TPA +
Sbjct: 61 SLNFKENDFLVVM--------GGKRPAASKPAADKKDTAS--------SKSEETPASS-- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + + AP+ P +S E ++ +
Sbjct: 103 -------STTEPKPASTTTSSSTPAAPSSGPAAS------------------EESLNTLT 137
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
MG +DR RAL AA+ N ERAVEYL +GIP
Sbjct: 138 AMG---FDRAQAERALSAAFGNIERAVEYLQNGIP 169
>gi|326480573|gb|EGE04583.1| nucleotide excision repair protein RAD23 [Trichophyton equinum
CBS 127.97]
Length = 255
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 220
+A SNL+ G TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP +
Sbjct: 77 RAESNLLMGDEYNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT 133
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 280
+ ++ NP + P+ P P S +A + + + +FL
Sbjct: 134 ----FYNRLNESTNP-----SLIPSGPQPASATSA-----------ERSTESNSDPFEFL 173
Query: 281 RNSQQFQALRTMVQANPQILQ 301
R+ QF +R+++ NP +L
Sbjct: 174 RSQPQFLQMRSLIYQNPHLLH 194
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 43/51 (84%), Gaps = 3/51 (5%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+LV G+ L+ +VQ +++MG ++RE V+RAL+A++NNP+RAVEYL++GIP
Sbjct: 128 DLVTGAALQTSVQNMIEMG---FEREQVLRALKASFNNPDRAVEYLFNGIP 175
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
+ G++ E TV ++ MG + R V+RAL+A+YNNP RA+EYL P E+ A P
Sbjct: 110 ITGTDYERTVNDMVGMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQ 166
Query: 223 VARASAGGQ----AGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ-GLPNMGSNAGAGT 276
+ AGGQ +PP Q+PA + S P+A P PQ GL G + +
Sbjct: 167 PRGSGAGGQQVPLTSSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNV 224
Query: 277 LDFLRNSQQFQALRTMVQANPQIL 300
L L QFQALR VQ NP +L
Sbjct: 225 LQGLSQLPQFQALRAAVQQNPGLL 248
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTK 76
+ + E++FVVVM++K
Sbjct: 60 DYSIQESNFVVVMVSK 75
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++ V G L TV+ +++MG ++RE V+RALRA+YNNP+RAVEYL++GIP
Sbjct: 135 NSFVTGEVLNTTVRNMMEMG---FEREQVMRALRASYNNPDRAVEYLFNGIP 183
>gi|114205486|gb|AAI11407.1| Rad23b protein [Rattus norvegicus]
Length = 225
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 27/132 (20%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASA 228
E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 1 ENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------ 51
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
PP P +PA + + +G L+FLRN QFQ
Sbjct: 52 ------PPQAVSTGTPQSPAVAAAAATTT--------ATTTTTSGGHPLEFLRNQPQFQQ 97
Query: 289 LRTMVQANPQIL 300
+R ++Q NP +L
Sbjct: 98 MRQIIQQNPSLL 109
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 46/234 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL ++E+ V +K+ + ++ + P Q LI+ G++++D L
Sbjct: 1 MKISIRTLDQRTIKLEMSDSQDVRALKQRLGSMPEVAI-PVESQQLIYGGRIMEDALPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+AE+ F+V+M G A PA A + PPT P T
Sbjct: 60 DYKIAEDKFIVLM---------GKKMPPAKPAGTA-AEENVPPT----------PPLTAG 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P ++ PP + P P+ P E V+ ++
Sbjct: 100 PSETRTHEIPPLSPAPALVMAPPPAPPSMTPN--------------------EQRVRDLM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
MG G + V ALRA++N+PERA+EYL SGIP+ P A A+A G A N
Sbjct: 140 AMGYGE---QEVRAALRASFNHPERAIEYLISGIPQNAPQP--ANATASGPAPN 188
>gi|71022291|ref|XP_761375.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
gi|46097608|gb|EAK82841.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
Length = 447
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 9/75 (12%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 222
+ + + G LE+ +Q +++MG ++R+ V RA+RAA+NNP+RAVEYL +GIPE PP
Sbjct: 170 SGSFLTGGALESAMQSMVEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEHLVNPP 226
Query: 223 ------VARASAGGQ 231
AR S+ GQ
Sbjct: 227 AAAAEAAARTSSEGQ 241
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 100/251 (39%), Gaps = 75/251 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK + D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLL-----VDEYEPASLRLCFNGAVLEDSKILA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V +N F+V+ K K+ AS SA P Q T +AP S AP A
Sbjct: 56 DAGVKDNDFLVLAGRKRKIPKP-ASMPSAEP----QKTEAAPEFS----------APLSA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAP--------------------------------- 147
+APPPA P A
Sbjct: 101 -------TAPPPAMPTSASTTTSTADSAAPAVPAATTAPATAPAPAPAPAPAPAPVAPTP 153
Query: 148 ---APAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPE 204
+ PV+S + +YG A NL + ++ M G DR + ALRAA+ N +
Sbjct: 154 PAGSAIPVASAASIYG-VAPNL---------IDEVAAM--GFEDRNQIALALRAAFMNVD 201
Query: 205 RAVEYLYSGIP 215
RAVEYL+ GIP
Sbjct: 202 RAVEYLFDGIP 212
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
S+ VAG L + ++ ++ MG ++RE ++RALRA++NNP+RAVEYL +GIPE
Sbjct: 164 SSFVAGGALNSAIENMMGMG---FEREQIMRALRASFNNPDRAVEYLLTGIPEH 214
>gi|351700121|gb|EHB03040.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 140
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I++ PE+ V + + IE+ +G D +P + Q LI+ GK+L D T++E
Sbjct: 55 VTLKTLQQQTFKIDIDPEETVKALNEKIESEKGKDAFPVAGQKLIYAGKILND-DTVKEY 113
Query: 63 KVAENSFVVVMLTKSK 78
K+ E +FVV M+TK K
Sbjct: 114 KIDEKNFVVFMVTKPK 129
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTLKG F +EV+ E V++VK I+T D+ PAS LIH GKVLKD +E
Sbjct: 1 MNLTVKTLKGGKFTVEVEAEKTVAEVKVAIQT--NKDL-PASSMKLIHSGKVLKDEDKIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+ N F+VVM+ +KVSS
Sbjct: 58 SCNIKPNDFLVVMI--AKVSS 76
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+ V G L+ ++ +++MG ++RE V+RALRA++NNP+RAVEYL++GIP
Sbjct: 145 SSFVTGDALQQSINGMIEMG---FEREQVMRALRASFNNPDRAVEYLFNGIP 193
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-- 221
S G+ EAT+Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE P
Sbjct: 81 STFAVGTEREATIQNIMEMG---YERSQVEAALRAAFNNPHRAVEYLLTGIPESLQRPEQ 137
Query: 222 PVA 224
PVA
Sbjct: 138 PVA 140
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D VS VK+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLVSAVKQKIAGEKGWD--PKDQK-LIYSGKILKDDDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPA 92
K+ E FVV M+ K K + S+APA
Sbjct: 58 SYKIEEKGFVVCMVNKPKAPKPTPAAESSAPA 89
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 70/162 (43%), Gaps = 25/162 (15%)
Query: 162 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 219 AVP-----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
P P A +A Q QQ + +LF
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 274 A--------------GTLDFLRNSQQFQALRTMVQANPQILQ 301
G + L + QQ Q LR +Q+NP+++Q
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQ 233
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 70/162 (43%), Gaps = 25/162 (15%)
Query: 162 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 219 AVP-----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
P P A +A Q QQ + +LF
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 274 A--------------GTLDFLRNSQQFQALRTMVQANPQILQ 301
G + L + QQ Q LR +Q+NP+++Q
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQ 233
>gi|323451497|gb|EGB07374.1| hypothetical protein AURANDRAFT_53989 [Aureococcus
anophagefferens]
Length = 371
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V VKTL+G F++E PE + VK IE Q A+ LIH GKVLKD TL
Sbjct: 1 MLVAVKTLEGRLFKVEAAPESTIGAVKGLIEASQPE--LKAAAMKLIHSGKVLKDEDTLA 58
Query: 61 ENKVAENSFVVVMLTKSK 78
+ V E SF+V M+TK K
Sbjct: 59 DKGVTEQSFLVCMVTKPK 76
>gi|282601359|ref|ZP_05981478.2| ubiquitin family protein [Subdoligranulum variabile DSM 15176]
gi|282569316|gb|EFB74851.1| ubiquitin family [Subdoligranulum variabile DSM 15176]
Length = 721
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+VFVK L G H +EV+P D++ DVK+ I+ +G P +Q LI GK+L+D TL+
Sbjct: 76 MQVFVKRLAGKHITLEVEPTDRIEDVKQKIQDKEG---IPPERQRLIFAGKILEDGNTLQ 132
Query: 61 ENKVAENSFVVVM 73
+ + ++S + ++
Sbjct: 133 DYSIRKDSTIYLV 145
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSA 89
+ E F+V M++K K + S ++ VS+
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAPSTSAGVSS 86
>gi|327493259|gb|AEA86336.1| putative DNA repair protein [Solanum nigrum]
Length = 172
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 248 APTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
AP+SG PN+ PL+LFPQ AG G+LDFL N+QQFQALR+MVQANPQIL+
Sbjct: 18 APSSGTPNSAPLNLFPQENVAGAGGAGLGSLDFLMNNQQFQALRSMVQANPQILR 72
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC 2509]
Length = 383
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN-------------MGSNAGAGTLDF 279
P A QA PAA N DL Q L N AG G LDF
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ-LGNSAGGRGARGAEGAGAEAAGLGNLDF 267
Query: 280 LRNSQQFQALRTMVQANPQILQ 301
LRN+ QFQ +R +VQ PQ+L+
Sbjct: 268 LRNNAQFQQMRQLVQEQPQMLE 289
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN-------------MGSNAGAGTLDF 279
P A QA PAA N DL Q L N AG G LDF
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ-LGNSAGGRGARGAEGAGAEAAGLGNLDF 267
Query: 280 LRNSQQFQALRTMVQANPQILQ 301
LRN+ QFQ +R +VQ PQ+L+
Sbjct: 268 LRNNAQFQQMRQLVQEQPQMLE 289
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 43/54 (79%), Gaps = 3/54 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
S+ + G+ L++++Q +++MG + R+ V+RA+RA+YNNP+RAVEYL +GIPE
Sbjct: 136 SSFLTGNALQSSIQNMVEMG---FPRDQVLRAMRASYNNPDRAVEYLMTGIPEH 186
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%), Gaps = 3/51 (5%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
AS++V G+ LEA + I MG ++R VI+AL+AAYNNPERAVEYL SG
Sbjct: 122 ASDMVMGAELEAKIADIESMG---FERSKVIQALKAAYNNPERAVEYLLSG 169
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 371
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G D A+QQ LI+ GK+L+DV T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 57
Query: 61 ENKVAENSFVVVMLTKSK 78
+ E F+V M++K K
Sbjct: 58 SYNIEEKGFIVCMVSKPK 75
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 116/309 (37%), Gaps = 92/309 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVY--PASQQMLIHQGKVLKDVTT 58
MK+ TLK +EV P D V + I GS + AS+ LIH GK+LK
Sbjct: 1 MKLIACTLKNVETCVEVDPSDTVDALTNKI----GSSLNNASASKMRLIHAGKILK---- 52
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+++ S + + + Q++ ++ A PT PAPT
Sbjct: 53 -MEQKISDYSDI-----------KDGDKIIVLFSKQSEASTIANPT----------PAPT 90
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P A A P P P P + L+ G LE +
Sbjct: 91 -----------STPIADANTSPPKPIPTTDP--------------NALLMGEELEKAING 125
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I++MG +D E+V A+ AA+NNP RA+E L R +
Sbjct: 126 IVEMG---FDVESVKAAMSAAFNNPNRAIELL-------------TRHEVDVSDHDTH-- 167
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
Q+ Q T + L +G LD LR F+ +R +V++NPQ
Sbjct: 168 -QSVQTTVSISTICYKNHEL---------------SGVLDELRQHPMFEQMRAIVRSNPQ 211
Query: 299 IL-QQWALI 306
L Q +LI
Sbjct: 212 TLPQILSLI 220
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G D A+QQ LI+ GK+L+DV T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 57
Query: 61 ENKVAENSFVVVMLTKSK 78
+ E F+V M++K K
Sbjct: 58 SYNIEEKGFIVCMVSKPK 75
>gi|90078929|dbj|BAE89144.1| unnamed protein product [Macaca fascicularis]
Length = 217
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 29/131 (22%)
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 229
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 1 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGA 57
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q+ A +SG G P L+FLRN QFQ +
Sbjct: 58 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQM 96
Query: 290 RTMVQANPQIL 300
R ++Q NP +L
Sbjct: 97 RQIIQQNPSLL 107
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + ++K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGELKAKIQADKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPAN 93
+ E F+V M++K+ + + + +SA N
Sbjct: 58 SYSIEEKGFIVCMVSKTPAAPAAPAPLSAVSQN 90
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
S L G+ EA V + MG + R + A+RAA+ NP+RAVEYL +GIP+
Sbjct: 112 SALTMGNEREAAVANMESMG---FARADIDAAMRAAFFNPDRAVEYLLTGIPD 161
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 10/154 (6%)
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD-VYGQAASNLVAGSNLEATVQQIL 180
P S P S P + P P P+ + VS+ Y +S V GS LE ++ +I
Sbjct: 85 PNSQPSSTTTPTSKPPQPPTQDDTPNQPSSGNVVSEQTYENVSSKFVMGSELEQSINRIC 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV-----ARASAGGQAGNP 235
+MG ++R V RA+ AA+NNP+RAVE+L +G + +P + A A G AG+
Sbjct: 145 EMG---FERPLVERAMAAAFNNPDRAVEFLSTGNIPASNMPNINAQNLATAEHGDPAGDD 201
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 269
Q P ++P +L Q L N+G
Sbjct: 202 VLQMLQSHPMFEQLIQAVRSDP-NLLQQMLENLG 234
>gi|311771876|pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 60.8 bits (146), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67
Query: 63 KVAENSFVVVMLTKSK 78
++ E +FVVVM+TK+K
Sbjct: 68 RIDEKNFVVVMVTKTK 83
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces
marneffei ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces
marneffei ATCC 18224]
Length = 372
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETVGQVKEKIAQEKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSG 83
+ E F+V M++K K ++ G
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAAGG 80
>gi|145499454|ref|XP_001435712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402847|emb|CAK68315.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 10/86 (11%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI-PEQTAV 220
+ + L++G + ++Q++ MG + RE + A++AA+NNP+RAVEYL +GI P T+
Sbjct: 124 SGTGLLSGPEYDKAIEQLMSMG---FQREECVNAMKAAFNNPDRAVEYLLNGIPPGVTSH 180
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAA 246
PP AS GQ PPA AQQP
Sbjct: 181 PPAPVASGQGQ---PPA---AQQPVG 200
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---------EQTAVPPV 223
E + I +M ++R + A+RAAYNNPERAVEYL +GIP +
Sbjct: 177 EQRAEAIANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPANLQQQAASSRQPSAAP 236
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA--------- 274
A A A A P A AQ + A G + P++LF +G++AG
Sbjct: 237 AAAPAAAPAAAPAAAPAAQAASPAAAAGGDDEGPVNLFDLA-AQLGNSAGGRGARGAEGA 295
Query: 275 -------GTLDFLRNSQQFQALRTMVQANPQILQ 301
G LDFLRN+ QFQ +R +VQ PQ+L+
Sbjct: 296 GAEAAGLGNLDFLRNNAQFQQMRQLVQEQPQMLE 329
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F +E++P + ++ VK I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETIAKVKAKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST 106
K+ E FVV ++ K K TT+ P S+
Sbjct: 58 SYKIEEKGFVVCVVNKPK------------------TTAPKPAESS 85
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ +KT++ F +E + + V DVK+ IE S +P QQ +I+ GK+L+D T++
Sbjct: 2 VKITLKTVQNKLFTVEAEEAETVGDVKRKIEE---SQTFPVEQQKIIYSGKILQDDTSIG 58
Query: 61 ENKVAENSFVVVMLTKSK 78
K+ E F+VVM++K K
Sbjct: 59 SLKIKEKDFLVVMVSKPK 76
>gi|71033501|ref|XP_766392.1| DNA repair protein Rad23 [Theileria parva strain Muguga]
gi|68353349|gb|EAN34109.1| DNA repair protein rad23, putative [Theileria parva]
Length = 326
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 51/219 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
M + VKTLK +++V V D+ + ++ +P A LIH GK+LK
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQAESLKLIHAGKILKKEL 55
Query: 58 TLEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L++ + + + V+V+ +S+TP
Sbjct: 56 LLKDYSDIKDGDKVIVI-------------------------------------SSKTPD 78
Query: 117 PTVA-PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEA 174
P+ P S P S P + AP P+P P+ +VS Y +S LV GS LE
Sbjct: 79 PSKHQDPNSQPSSTTTPTSKAPQPSPLDNSPHQPSSGHNVSQQTYETVSSKLVMGSELEQ 138
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
++ +I +MG ++R V RA+ AA+NNP+RAVE+L +G
Sbjct: 139 SINRICEMG---FERPLVERAMAAAFNNPDRAVEFLSTG 174
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
S GS EAT+ I++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 61 STFALGSEREATILNIMEMG---YDRPQVEAALRAAFNNPHRAVEYLITGIPE 110
>gi|37927447|pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
gi|37927452|pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 60.5 bits (145), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTK 78
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V ++ LK F IE +P + + +K+ I +G D A+QQ LI+ GK+L+DV T+E
Sbjct: 48 LSVLLQDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 104
Query: 61 ENKVAENSFVVVMLTKSK 78
+ E F+V M++K K
Sbjct: 105 SYNIEEKGFIVCMVSKPK 122
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 406
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ KT++ F ++ + D V+D+KK I+ Q +P Q LI+ GK+L D +++E
Sbjct: 2 VKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 58
Query: 61 ENKVAENSFVVVMLTKSK 78
K+ E F+VVM+++ K
Sbjct: 59 SLKIKEKDFLVVMVSRPK 76
>gi|426387417|ref|XP_004060165.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 3
[Gorilla gorilla gorilla]
gi|194375626|dbj|BAG56758.1| unnamed protein product [Homo sapiens]
Length = 198
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 51/140 (36%)
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 4 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQE 50
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV---- 293
++QPA A AG L+FLR+ QFQ +R ++
Sbjct: 51 SQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNP 87
Query: 294 -----------QANPQILQQ 302
Q NPQ+LQQ
Sbjct: 88 ALLPALLQQLGQENPQLLQQ 107
>gi|76155958|gb|AAX27211.2| SJCHGC03112 protein [Schistosoma japonicum]
Length = 155
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 34/161 (21%)
Query: 53 LKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
++D +L++ KV ++ FVVVM +VS P + A+ S TS T
Sbjct: 1 MEDSKSLKDYKVTDSGFVVVM------------SVSKLPRDIAKEAS----TSVLSNLTD 44
Query: 113 QTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNL 172
E P P+ +P + A P S+ ++ S+LV G +
Sbjct: 45 --------------EGKPMPSEKSPNVDVIESVNVATTP-STATNTLSFLKSSLVLGEDF 89
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
E+ VQ+++ MG +++ VI+A+RA +NNP+RA EYL SG
Sbjct: 90 ESVVQELVSMG---FEKPLVIQAMRAGFNNPDRAFEYLSSG 127
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
Length = 383
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+ V G+ L+ TV + +MG + RE V+RALRA++NNP+RAVEYL +GIP
Sbjct: 133 SSFVTGNVLQETVNNMTEMG---FPREQVLRALRASFNNPDRAVEYLMNGIP 181
>gi|217070100|gb|ACJ83410.1| unknown [Medicago truncatula]
gi|388522857|gb|AFK49490.1| unknown [Medicago truncatula]
Length = 142
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%), Gaps = 1/42 (2%)
Query: 260 LFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
+FPQ + G+ AGAG+LDFLRN+ QFQALRTMVQ+NPQILQ
Sbjct: 1 MFPQETIS-GAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQ 41
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 103/225 (45%), Gaps = 27/225 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP----------TT 110
+ V +N +V+ K K+ A + P +A SSAP +S P TT
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATPPAAMPTPALTTT 115
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
T T A TV PP ++ + A A A A +S ++ YG + NL+
Sbjct: 116 TPATSAATVDPPAPAVPASAAAPSAPVASTTPAASAVPAASAASATNTYG-VSLNLI--- 171
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++ MG DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 172 ------DEVASMG--FEDRNQIALALRAAFMNVERAVEYLFEGIP 208
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ KT++ F ++ + D V+D+KK I+ Q +P Q LI+ GK+L D +++E
Sbjct: 2 VKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 58
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+VVM+++
Sbjct: 59 SLKIKEKDFLVVMVSR 74
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 25/155 (16%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP--- 222
+ G+ LEA++ +++ MG + RE RA+RA+YNNP RAVEYL +GIP + P
Sbjct: 186 FLTGARLEASIAEMVSMG---FPREDCQRAMRASYNNPHRAVEYLMNGIPAEAQTAPPRA 242
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP----------------QGLP 266
V A+ G T+ A + P++LF
Sbjct: 243 VPAATTGATPAAATTTTETAATPAAPVPAPTTGQPMNLFDAARQAAQNPAPAAATGGAAR 302
Query: 267 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
+ AG LD LR F+ LRT+VQ NP +LQ
Sbjct: 303 PGATEAG---LDALRREPAFEQLRTLVQQNPALLQ 334
>gi|123454697|ref|XP_001315100.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479152|ref|XP_001322735.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479160|ref|XP_001322739.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897766|gb|EAY02877.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905587|gb|EAY10512.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905591|gb|EAY10516.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
A+ LV + E + Q+++ G ++R+ V+RALRAA+NNP+RA EYL++GIP
Sbjct: 77 ANALVVDEDQERVILQLMEFG---FERDQVVRALRAAFNNPDRAAEYLFNGIPRHV 129
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 29/145 (20%)
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
Y Q VQ+++ MG + R+ V+RALRA++NNP+RAVEYL SGIP++
Sbjct: 103 YEQT-------------VQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPDEP 146
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
A P A Q AP + S AG L
Sbjct: 147 VPEAPVAAPPAAGQQPPAAGGQPPAAPPAAPATPGTP-------------ASTAGEDPLH 193
Query: 279 FLRNSQQFQALRTMVQANPQILQQW 303
FLR++ QF+ +R +VQ+NP +L +
Sbjct: 194 FLRSTPQFETMRRLVQSNPGLLSNF 218
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V KTL+ F+IE++ V +K+ +E +G + +PA+ LI+ GK+L+D L
Sbjct: 1 MQVTFKTLQQQTFKIEIEENATVKQLKEKVEGEKGKESFPAAGLKLIYAGKILQDDLPLS 60
Query: 61 ENKVAENSFVVVMLTK 76
+ K+ E +FVVVM+TK
Sbjct: 61 QYKIDEKNFVVVMVTK 76
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
V G+ E V ++ MG ++R+ V+ ALRA++NNP+RAVEYL +G+P
Sbjct: 133 VTGTAYETMVTSMMSMG---FERDQVVAALRASFNNPDRAVEYLLTGLP 178
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus
fumigatus Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus
fumigatus A1163]
Length = 376
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPA 92
+ E F+V M++K K SS A+T S AP+
Sbjct: 58 TYNIEEKGFIVCMVSKPKAPSS-AATPSQAPS 88
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea MF3/22]
Length = 406
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+G S ++G L+A++Q +++MG ++R V+RA++A++NNP+RAVEYL +GIP
Sbjct: 138 FGDTTS-FLSGDALQASIQNMIEMG---FERAQVMRAMKASFNNPDRAVEYLMNGIP 190
>gi|123398957|ref|XP_001301380.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123497770|ref|XP_001327247.1| polyubiquitin [Trichomonas vaginalis G3]
gi|154420157|ref|XP_001583094.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121882554|gb|EAX88450.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910174|gb|EAY15024.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121917333|gb|EAY22108.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 132
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum
SO2202]
Length = 392
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + VK I +G D P++Q+ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSETIGAVKGKISAEKGWD--PSTQK-LIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSS 82
K+ E F+V M +K K +++
Sbjct: 58 SYKIEEKGFIVCMTSKPKAAAT 79
>gi|342181674|emb|CCC91154.1| putative UV excision repair RAD23 protein, partial [Trypanosoma
congolense IL3000]
Length = 280
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE-ATVQQILD 181
Q+V E AP + + APA A AP P P + + + S++ A ++ A + I
Sbjct: 18 QNVKE-APHVSEGSEAPATASAPTPGEQPSAETAAAAPRTGSSVAATQGVDPALIDSIAA 76
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MG DR+ + ALRAAY NP+RAVE+L++GIP V R A Q P T
Sbjct: 77 MG--FEDRDQIALALRAAYMNPDRAVEFLFTGIPSH-----VQRELAESQLRAVPGNTSV 129
Query: 242 QQPA-APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
A P SG + LF NA L Q + +R++V++NPQ L
Sbjct: 130 SGGVDATHPQSGRGGDTESLF---------NA-------LMAVPQMEEIRSIVRSNPQAL 173
>gi|389609121|dbj|BAM18172.1| UV excision repair protein rad23 [Papilio xuthus]
Length = 254
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 15/114 (13%)
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAP-APAPAPAPAPAPAPAPVSSVSDVYGQ 161
P+ TQ ++TS A A V +S +A P P A P PV+ VS
Sbjct: 7 PSETQASSTSTPEAGECAASTVVGDSKEKSSAEETPKPPTAAEPERTSEPVAPVS----- 61
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
A + E+TVQ I+DMG ++R+ V +ALRA+++N ERAVEYL +GIP
Sbjct: 62 ------AELDFESTVQSIMDMG---YNRQQVEQALRASFSNRERAVEYLITGIP 106
>gi|154416733|ref|XP_001581388.1| ubiquitin [Trichomonas vaginalis G3]
gi|121915615|gb|EAY20402.1| ubiquitin, putative [Trichomonas vaginalis G3]
Length = 166
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 35 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 91
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 92 DYSIQKDSTLHLVL 105
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 382
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F+IEV E D V +K+ D YP +Q LI+ GK+++D L
Sbjct: 1 MKITIKTLKQEAFQIEVDVEKDTVRTLKEKFFQESKQD-YPVERQRLIYLGKIMEDDLPL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + FVVVM N+ TT+ A P ++ T +
Sbjct: 60 SHYSLDDKKFVVVM-------------------NKKPTTAPAEPAASSSATAPAESKSST 100
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A ES A A A +++ VQ+I
Sbjct: 101 AK----SESGAQSEATAAASKAPEEKPKEQEKKEEEEKPKEDKKPEEPPQDDIQIKVQRI 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
+MG + E AL NNP+RAVEYL S I
Sbjct: 157 TEMG---YSLEEARIALEICDNNPDRAVEYLLSEI 188
>gi|159162478|pdb|1IFY|A Chain A, Solution Structure Of The Internal Uba Domain Of Hhr23a
Length = 49
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 2 LVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 48
>gi|154416813|ref|XP_001581428.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121915655|gb|EAY20442.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 147
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFV 70
+ + ++S +
Sbjct: 134 DYSIQKDSIL 143
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 124/324 (38%), Gaps = 87/324 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + + QGK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSE-------------------------LFQGKILKDDETVG 35
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K PT +++ A A
Sbjct: 36 SYNIEEKGFVVCMVNKPK-----------------------------PTKPAESSAAPPA 66
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P A A A PA P P S +D + S L GS + +
Sbjct: 67 TPAAPPTRTPAAPAAPAQSASQQAAVPATPTPQRS-ADAGSEEPSGLAMGSQRTEAIANM 125
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R + A+RAA+NNP+RAVEYL +GIP+ R + P A
Sbjct: 126 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPDNI------RQEQQQREAAPAAHA 176
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA----------------------GAGTL 277
A A G ++LF + G+NA G L
Sbjct: 177 AQPSQPAAAAPQGGEEGGVNLFDLAAQHGGTNARGGSGGNEAAAAAAAAAAGQGGDLGNL 236
Query: 278 DFLRNSQQFQALRTMVQANPQILQ 301
DFLR++ QFQ LR +VQ PQ+L+
Sbjct: 237 DFLRHNAQFQQLRQIVQQQPQMLE 260
>gi|123390686|ref|XP_001299928.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880877|gb|EAX86998.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 186
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 110 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 166
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 167 DYSIQKDSTLHLVL 180
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL++ +
Sbjct: 38 VKTLTGKHITLEVEPTDRIEDVKTKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQDYSI 94
Query: 65 AENSFVVVML 74
++S + ++L
Sbjct: 95 QKDSTLHLVL 104
>gi|429327043|gb|AFZ78850.1| polyubiquitin [Coptotermes formosanus]
Length = 230
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|123390682|ref|XP_001299927.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880876|gb|EAX86997.1| polyubiquitin [Trichomonas vaginalis G3]
Length = 153
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|123471218|ref|XP_001318810.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479158|ref|XP_001322738.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123501326|ref|XP_001328048.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121901578|gb|EAY06587.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905590|gb|EAY10515.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910986|gb|EAY15825.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|123445177|ref|XP_001311351.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121893157|gb|EAX98421.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 229
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|1101011|gb|AAC46935.1| polyubiquitin, partial [Trichomonas vaginalis]
Length = 770
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 618 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 674
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + ++S + ++L G + T PT ++
Sbjct: 675 DYSIQKDSTLHLVL-----RLRGGMQIFVKTLTGKHITLEVEPTDRIEDVKAKIQVKEGI 729
Query: 121 PP 122
PP
Sbjct: 730 PP 731
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 10 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 66
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 67 DYSIQKDSTLHLVL 80
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 86 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 142
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 143 DYSIQKDSTLHLVL 156
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 162 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 218
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 219 DYSIQKDSTLHLVL 232
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 238 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 294
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 295 DYSIQKDSTLHLVL 308
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 314 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 370
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 371 DYSIQKDSTLHLVL 384
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 390 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 446
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 447 DYSIQKDSTLHLVL 460
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 466 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 522
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 523 DYSIQKDSTLHLVL 536
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 542 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 598
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 599 DYSIQKDSTLHLVL 612
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 694 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQVKEG---IPPDQQGLIFAGKQLEDGKTLQ 750
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 751 DYSIQKDSTLHLVL 764
>gi|341889007|gb|EGT44942.1| CBN-RAD-23 protein [Caenorhabditis brenneri]
Length = 328
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +TL +F +E+ + +++VKK + T +G D P Q+ LI+ GK+L D T + +
Sbjct: 5 VAFRTLTQINFSLELNEDQTIAEVKKLVATEKGDDYAPELQK-LIYNGKILDDATKVADV 63
Query: 63 KVAENSFVVVMLTKSKVSSS 82
+ FVVVMLTK K + +
Sbjct: 64 GFDSSKFVVVMLTKKKAAET 83
>gi|343470186|emb|CCD17040.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 230
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 40/209 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +++L G E EV P+ KV D+K+ +E + Y + + VL+D+ T+
Sbjct: 56 MKIILRSLTGKEHEQEVTPDTKVQDIKRVLE-----EEYAPESLRICYNNSVLEDLETMG 110
Query: 61 ENKVAENSFVVVMLTKSK-----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
V + S V+V + K + V+ + T+S A Q Q + P + +
Sbjct: 111 NLGVGDKS-VLVFVGKKRTIQKLVAKAIEDTLSLASVGQTQEQN----VKEAPHVSEGSE 165
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE-A 174
APT A S P + P+A APAP + S++ A ++ A
Sbjct: 166 APTTA---SAPTAGEQPSAETAAPAP-------------------RTGSSVAATQGVDPA 203
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNP 203
+ I MG DR+ + ALRAAY NP
Sbjct: 204 LIDSIAAMGFE--DRDQIALALRAAYMNP 230
>gi|210076049|ref|XP_002143115.1| YALI0F18403p [Yarrowia lipolytica]
gi|199424967|emb|CAR65204.1| YALI0F18403p [Yarrowia lipolytica CLIB122]
Length = 77
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G E++V+PED++S +K+ IE ++G P +QQ L+ GK L+D T+
Sbjct: 1 MKIKIKTLIGKEIEMDVEPEDQISVLKEKIEELEG---IPPAQQRLVFTGKQLQDEKTIA 57
Query: 61 ENKV 64
ENK+
Sbjct: 58 ENKI 61
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 4/51 (7%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPE 216
V G+ L+ + +++MG ++R+ V++ALRA+YNNP+RAVEYL SG IPE
Sbjct: 98 VTGAALQNAIDGMVEMG---FERDQVVKALRASYNNPDRAVEYLMSGNIPE 145
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+ G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 51 --KVLKDVTTLEENKVAENSFVVVMLTKSK 78
K+LKD T+ + K+ E F+VVM++K K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKPK 87
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 4/51 (7%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPE 216
V G+ L+ + +++MG ++R+ V++ALRA+YNNP+RAVEYL SG IPE
Sbjct: 89 VTGAALQNAIDGMVEMG---FERDQVVKALRASYNNPDRAVEYLMSGNIPE 136
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----------- 49
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 50 -GKVLKDVTTLEENKVAENSFVVVMLTK 76
GK+LKD T+ + K+ E F+VVM++K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSK 85
>gi|123454695|ref|XP_001315099.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897765|gb|EAY02876.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+K F++++ + + +VK IE +G D YP +I+QGKVL D TL
Sbjct: 1 MKVTIKTIKDGTFDLQMGDDATIGEVKAAIEQSKG-DKYPKDGLKVIYQGKVLGDSDTLA 59
Query: 61 ENKVAENSFVVVM 73
E F+VVM
Sbjct: 60 SANFQEKDFLVVM 72
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
E V ++++MG +DR V ALR A+ NP+RA EYL +G+P + A
Sbjct: 119 EDDVNRLMNMG---FDRPQVEAALRRAFGNPDRAAEYLTTGMPAEEA 162
>gi|294886021|ref|XP_002771518.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239875222|gb|EER03334.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEANFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
Length = 377
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 160 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
G + ++G+ + VQ +++MG + +E V+RA+RA++NNP+RAV+YL +GIP
Sbjct: 136 GFGTGSFLSGAAYQNAVQNLVEMG---FPQEQVVRAMRASFNNPDRAVDYLMNGIP 188
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ + G YP +Q LI+ GK+++D L
Sbjct: 1 MKITLKTLKQQTFFVEVDVEQDTVRTLKEKLHAESGL-AYPVDRQRLIYLGKIMEDDHLL 59
Query: 60 EENKVAENSFVVVMLTK 76
+ K+ + F+VVM K
Sbjct: 60 SQYKLDDKKFIVVMSKK 76
>gi|291407421|ref|XP_002719934.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 408
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K F I++ P V +K+ IE QG D +P + Q L++ G+VL D L
Sbjct: 1 MRLTLKAWPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ E+ V V++ +
Sbjct: 61 DCQIHEHHAVTVLVAR 76
>gi|294901159|ref|XP_002777264.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239884795|gb|EER09080.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEASFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+V+P + V +VK I +G Y A + +I+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YEAERMKVIYSGKILQDDKTVE 58
Query: 61 ENKVAENSFVVVMLTKS-KVSSSGAST 86
+ E F+V + +K K ++S AS+
Sbjct: 59 SYNIQEKDFLVCLPSKQPKAAASTASS 85
>gi|254568464|ref|XP_002491342.1| hypothetical protein [Komagataella pastoris GS115]
gi|238031139|emb|CAY69062.1| hypothetical protein PAS_chr2-1_0892 [Komagataella pastoris GS115]
Length = 383
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++VF+K +E+ V P V + K I V SD+ PA +Q LI+ G+ LKD TL
Sbjct: 5 IQVFIKASGNQEYELTVDPSITVEEFKGKIAEV--SDI-PADRQRLIYSGRALKDADTLN 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST 106
KV S + L KS + G S S A AN + +TS+ +T
Sbjct: 62 FYKV--QSGHTIHLVKSAPKNDGGS-ASVANANNSTSTSTGAANNT 104
>gi|291407419|ref|XP_002719906.1| PREDICTED: RAD23B protein-like [Oryctolagus cuniculus]
Length = 527
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 133 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 192
Query: 73 MLTK 76
++ +
Sbjct: 193 LVAR 196
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 20 EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78
++KV+D+KK I+ Q +P Q LI+ GK+L D +++E K+ E F+VVM+++ K
Sbjct: 10 QNKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVESLKIKEKDFLVVMVSRPK 65
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 20 EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78
++KV+D+KK I+ Q +P Q LI+ GK+L D +++E K+ E F+VVM+++ K
Sbjct: 10 QNKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVESLKIKEKDFLVVMVSRPK 65
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ ++TL E++V PE+ + ++K+ +E Q PA +Q L+H GK+L D ++
Sbjct: 1 MRLRIRTLSNEEAELDVGPEETIFNLKEKVE--QKWPHMPAVRQKLVHAGKILADSQKVK 58
Query: 61 EN-KVAENSFVVVMLTKS 77
E + EN +VVM+TK+
Sbjct: 59 ECPSLKENDRLVVMVTKA 76
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ + +++VK + + +G D P Q+ LI+ GK+L D +
Sbjct: 3 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQK-LIYNGKILDDSVKVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSG-ASTVS 88
E + FVVVML+K KV+ +STV+
Sbjct: 62 EVGFDSSKFVVVMLSKRKVTEVAPSSTVA 90
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL FE + + + DV+ + Q PA + +LIH+GKVL D TL
Sbjct: 1 MKVAFKTLTNQKFEEDFADDASIGDVRAKLSETQK---IPAPEMVLIHKGKVLTDDATLA 57
Query: 61 ENKVAENSFVVVM 73
V E SF+V+M
Sbjct: 58 AAGVTEASFIVMM 70
>gi|222064069|emb|CAQ86697.1| putative ubiquitin family protein (UBA/TS-N domain containing
protein) [Histomonas meleagridis]
Length = 257
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 98 TSSAPPTSTQPT--TTSQTPAPTVAPPQS-----VPESAPPPAAPAPAPAPAPAPAPA-- 148
TS + T+PT T + P P A P P+ PP PAP PAP
Sbjct: 7 TSGSKEFGTRPTQNTPEEAPKPQEALPAHEEPAPKPQEEAPPVHEEPAPKQQEDPAPQVQ 66
Query: 149 -PAPVSSVSDVYGQ----AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNP 203
P P SV+ Q + S+ ++ S+L V QI+DMG D E +ALR +NN
Sbjct: 67 QPTPTISVTQPQHQTSHTSGSDALSFSDL---VDQIVDMGFSKADAE---KALRKNHNNV 120
Query: 204 ERAVEYLYSGIPEQTAVPPVARAS 227
RA+EYL SG + + + V + S
Sbjct: 121 TRAIEYLLSGATDDSELSFVRQNS 144
>gi|390367531|ref|XP_783007.3| PREDICTED: ubiquilin-1-like [Strongylocentrotus purpuratus]
Length = 607
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VKT K IE+ P+ + ++K I + V Q LI GK+LKD TL+
Sbjct: 16 ISVVVKTPKDKE-TIEINPDSTIKELKDEISKKFSTTV---EQLCLIFAGKILKDNDTLK 71
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS----AAPAN 93
+N + +N VV ++ +SK +G ST + A+PAN
Sbjct: 72 QNNIKDN-MVVHLVIRSKKDQAGTSTATTSSPASPAN 107
>gi|340522496|gb|EGR52729.1| hypothetical protein TRIREDRAFT_102581 [Trichoderma reesei QM6a]
Length = 341
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 85/216 (39%), Gaps = 63/216 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P DK+ LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKI-----------------------------LKDDDTVQ 31
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + + A+ + PA A +++ P + S T A
Sbjct: 32 SYNIEEKGFVVCMVNKPKPAPAAAAAAAPPPATPAPPAAASTPAAPPAPAQSATQAAAPP 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ S P+ A A A A N+EA
Sbjct: 92 ATPTPNRSTGTPSGLAMGSERAEAIA------------------------NMEA------ 121
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 122 -MG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPE 153
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L GS E Q+ MG + R + RA+RAA+ NP+RA+EYL +GIP+ +
Sbjct: 139 SALTMGSAAEGAAAQMEAMG---FARTDIDRAMRAAFYNPDRAIEYLLTGIPDN-----I 190
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN 256
+ + PA T A PAAP+ P+ N
Sbjct: 191 QEQQQQQRQASEPASTGA-APAAPSGGDEPHFN 222
>gi|123504409|ref|XP_001328742.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121911689|gb|EAY16519.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 310
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 49/218 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + G E+EV + ++DVKK I V+ + + + L+ + K LK +TL+
Sbjct: 1 MKIICQIFSGDKLELEVTEDQDINDVKKQISEVKNAKI---EEIKLLFKSKFLKSPSTLK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + ENS ++VM+ K + T PA + + AP QP T + P +A
Sbjct: 58 ECGITENSKLIVMVPNKKPAPPINKTTETKPAEE----NKAP---NQPEETKKIIQPEIA 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P +V + + P + E ++Q+
Sbjct: 111 PLPTVDKKSKIELPP-----------------------------------DFEDKIKQLQ 135
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQ 217
+G ++ RALR A N E A L SG IP++
Sbjct: 136 QLG---YEYSECSRALRVAGFNTEIAANILLSGSIPDE 170
>gi|336268454|ref|XP_003348992.1| RAD23 protein [Sordaria macrospora k-hell]
Length = 249
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
E + I +M ++R + A+RAAYNNPERAVEYL +GIP
Sbjct: 3 EQRAEAIANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIP 45
>gi|428168829|gb|EKX37769.1| high mobility group box fusion protein [Guillardia theta CCMP2712]
Length = 187
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDMVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
+ + + S + ++L + + + G P + +SSAP
Sbjct: 58 DYNIQKESTLHLVL-RLRGGAEGREKRQTKPVEKFTISSSAP 98
>gi|448524417|ref|XP_003868982.1| ubiquitin-like polyubiquitin-binding protein [Candida orthopsilosis
Co 90-125]
gi|380353322|emb|CCG26078.1| ubiquitin-like polyubiquitin-binding protein [Candida
orthopsilosis]
Length = 359
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +K+ +EI K+S++K E + PAS Q LI+ GKVLKD T E
Sbjct: 4 ITVTIKSSGDKKYEITFNSSIKISELK---ELIAEKSSIPASSQRLIYSGKVLKDTETAE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS 105
K+ +NS + ++ + + + A++ S+ AQT SS P++
Sbjct: 61 SYKI-QNSHTIHLVKSANAAPTPATSESSTTQTAAQTPSSNIPSN 104
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP 108
+ V +N +V+ K K+ A + P +A SSAP +S P
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATP 103
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
A + I +M ++R + A+RAA+NNPERAVEYL +GIP
Sbjct: 147 ARAEAIANMEAMGFERSQIDIAMRAAFNNPERAVEYLLNGIP 188
>gi|328352143|emb|CCA38542.1| mitochondrial intermediate peptidase [Komagataella pastoris CBS
7435]
Length = 1191
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++VF+K +E+ V P V + K I V SD+ PA +Q LI+ G+ LKD TL
Sbjct: 813 IQVFIKASGNQEYELTVDPSITVEEFKGKIAEV--SDI-PADRQRLIYSGRALKDADTLN 869
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS--APPTSTQPTTTSQ----- 113
KV + L KS + G S S A AN + +TS+ A TS+ P+ +
Sbjct: 870 FYKVQSGH--TIHLVKSAPKNDGGSA-SVANANNSTSTSTGAANNTSSAPSNIAAGQGAF 926
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAP 147
P + + P P+A P P P
Sbjct: 927 NPLAGLTGARYAGMDVPMPSASMFGPDGGMGPMP 960
>gi|294886433|ref|XP_002771708.1| Deubiquitination-protection protein dph1, putative [Perkinsus
marinus ATCC 50983]
gi|239875444|gb|EER03524.1| Deubiquitination-protection protein dph1, putative [Perkinsus
marinus ATCC 50983]
Length = 348
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKK V+ S V PA QQ LI++G++LKD T+
Sbjct: 3 INITFKVSGGSSFEQSFDPETTIGDVKKG--CVEKSGV-PAEQQRLIYKGRILKDADTVG 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|294872216|ref|XP_002766209.1| RAD 23B protein - channel catfish, putative [Perkinsus marinus
ATCC 50983]
gi|239866868|gb|EEQ98926.1| RAD 23B protein - channel catfish, putative [Perkinsus marinus
ATCC 50983]
Length = 350
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKK V+ S V PA QQ LI++G++LKD T+
Sbjct: 3 INITFKVSGGSSFEQSFDPETTIGDVKKG--CVEKSGV-PAEQQRLIYKGRILKDADTVG 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|159475896|ref|XP_001696050.1| hypothetical protein CHLREDRAFT_80907 [Chlamydomonas reinhardtii]
gi|158275221|gb|EDP00999.1| predicted protein [Chlamydomonas reinhardtii]
Length = 370
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q A + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFNVEAEDSMTIGALKDKVQETQPDCTREAMK--LVYKGKVLDDATTVG 58
Query: 61 ENKVAENSFVVVML 74
+N+V E F+VV +
Sbjct: 59 DNQVTEQGFIVVFI 72
>gi|119473613|ref|XP_001258682.1| hypothetical protein NFIA_001330 [Neosartorya fischeri NRRL 181]
gi|119406835|gb|EAW16785.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
Length = 434
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 55 DVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
D T L E F +T ++ ++ T +A+ T SA T S
Sbjct: 249 DGTILIERNDENERFYGRKVTVKEIMAAHVRTENASVRMLTHTLHSAQGDKQFDQTPSGV 308
Query: 115 PAPTVAPPQSV-PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE 173
PT P + PE A APA P + + + +L N E
Sbjct: 309 AVPTGPSPSDIAPEDLANSNLMAHGALAAPAQTATETPAT-----FNDRSVHLDGVQNEE 363
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
A V Q+ MG + R + RA+RAA NP+RAVEYL +G P+
Sbjct: 364 AVVAQMESMG---FARIDIDRAMRAASFNPDRAVEYLLNGFPD 403
>gi|361129234|gb|EHL01146.1| putative UV excision repair protein rhp23 [Glarea lozoyensis 74030]
Length = 321
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+S L G+ A + ++ MG ++R + A+RAA+ N ERA+EYL +GIPE
Sbjct: 69 SSGLAMGAERAAQIAEMESMG---FERSQIDLAMRAAFFNSERAIEYLLTGIPE 119
>gi|123495684|ref|XP_001326794.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121909714|gb|EAY14571.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 330
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V ++T+ G ++ V+P ++++K + + ++V P + LI+ K L D T+
Sbjct: 1 MEVSLRTISGVTYKQAVEPTTTIAELK--VLVSEKANVAPEGIK-LIYSAKFLDDSKTIA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP---PTSTQPTTTSQTPAP 117
E+ + +++ + SK A Q Q SS P P + AP
Sbjct: 58 ESNIQPGQAIIMHVQSSK------------NAKQPQKKSSEKRKSPKKESPIKVQEAAAP 105
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
AP Q E+ P P + AP P +A LV N A VQ
Sbjct: 106 --APTQPKEEATQKPEQPGHSMV-----APLPE---------LEAKHQLVDPPNFNALVQ 149
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPE 216
+ +MG D ALRAA NP+RA E+L + IPE
Sbjct: 150 TLTEMGFSEGD---AAHALRAAVYNPDRAAEFLLTNYIPE 186
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S L G +A V + MG + R+ + RA+RAA+ NP+RAVEYL +GIP
Sbjct: 133 SALAMGEQRQAAVANMEAMG---FPRDQIDRAMRAAFFNPDRAVEYLLNGIP 181
>gi|341902355|gb|EGT58290.1| hypothetical protein CAEBREN_15682 [Caenorhabditis brenneri]
Length = 316
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 42/141 (29%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV----PPVARASA 228
E ++ I+++G DRE + LRAA + +RA YL++GIPE + V P RA
Sbjct: 107 EESIAAIMEIGA---DREQAVAVLRAARWSRDRAAGYLFNGIPEDSVVQEPAPQEPRAEE 163
Query: 229 -GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
GG+A A+ +AQ+ LD L N Q +
Sbjct: 164 QGGEAPAVDAEAEAQEHE------------------------------DLDILANLPQLE 193
Query: 288 ALRTMVQANPQ----ILQQWA 304
+R +VQ NP+ ILQQ A
Sbjct: 194 EIRQLVQQNPENLAPILQQIA 214
>gi|425772801|gb|EKV11188.1| RNA polymerase I specific transcription initiation factor Rrn7,
putative [Penicillium digitatum PHI26]
gi|425782032|gb|EKV19963.1| RNA polymerase I specific transcription initiation factor Rrn7,
putative [Penicillium digitatum Pd1]
Length = 770
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 606 MQIFVKTLTGKTITLDVESSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 662
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 663 DYNIQKESTLHLVL 676
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
KV VK+ I +G +V Q LI+ GK+L+D T+E + E F+V M++K K S
Sbjct: 6 KVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIETYNIEEKGFIVCMVSKPKAPS 62
Query: 82 SGASTVSAAPA 92
S A+T S AP+
Sbjct: 63 S-AATPSQAPS 72
>gi|255074919|ref|XP_002501134.1| predicted protein [Micromonas sp. RCC299]
gi|226516397|gb|ACO62392.1| predicted protein [Micromonas sp. RCC299]
Length = 308
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ VK G+ + V+ V ++K +E +D P++QQ LI++G VLKD TLE
Sbjct: 6 IHVKATSGSKITVSVELSTTVGELKTTLEAADKADT-PSAQQRLIYKGHVLKDEKTLESY 64
Query: 63 KVAENSFV 70
V E+ +
Sbjct: 65 GVGEDHVI 72
>gi|326469376|gb|EGD93385.1| deubiquitination-protection protein dph1 [Trichophyton tonsurans
CBS 112818]
Length = 476
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VK+ F + +KP V+++K+ + + ++V P +Q LI+ G+VLKD TL +KV
Sbjct: 12 VKSSAEPKFSLTLKPSSTVAEIKQILAGEEYANV-PPERQRLIYSGRVLKDTDTLASHKV 70
Query: 65 AENSFVVVMLTKSKV 79
E + L KS V
Sbjct: 71 KEGH--TIHLVKSAV 83
>gi|326483042|gb|EGE07052.1| deubiquitination-protection protein dph1 [Trichophyton equinum
CBS 127.97]
Length = 478
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VK+ F + +KP V+++K+ + + ++V P +Q LI+ G+VLKD TL +KV
Sbjct: 12 VKSSAEPKFSLTLKPSSTVAEIKQILAGEEYANV-PPERQRLIYSGRVLKDTDTLASHKV 70
Query: 65 AENSFVVVMLTKSKV 79
E + L KS V
Sbjct: 71 KEGH--TIHLVKSAV 83
>gi|403370790|gb|EJY85262.1| Ubiquitin [Oxytricha trifallax]
Length = 411
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 189 RETVIRALRAAYNNPERAVEYLYSGI 214
R+ I ALRAA+NNP+RA EYL SG+
Sbjct: 147 RDQCILALRAAFNNPDRAFEYLLSGV 172
>gi|378755317|gb|EHY65344.1| hypothetical protein NERG_01790 [Nematocida sp. 1 ERTm2]
Length = 306
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
MK+ VKT KG + +EV+ PE V +K+ I E Q P S+ LIH GK+LKD
Sbjct: 1 MKINVKTSKGEVYSVEVEGPESTVLALKEKISEQAQA----PVSKIRLIHVGKLLKDQEP 56
Query: 59 LEENKVAENSFVVVML--TKSKVSSSGASTVSAAPANQAQTTSSAP 102
L+ K+ ++S V +++ ++ K SS+ + + APA + S P
Sbjct: 57 LKTYKLEDDSMVHLVVPSSEKKASSTPSPAQAEAPAGEEAHASEVP 102
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q D + + + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFSVEAEESLTIGALKDKVQEAQ-PDCHRDAMK-LVYKGKVLDDGTTVG 58
Query: 61 ENKVAENSFVVVML 74
+N++ E F+VV +
Sbjct: 59 DNQITEQGFIVVFV 72
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D + A LI+ GK+L D T +E+ K+ +FVVVM+ K + S
Sbjct: 28 VRALKERIEKDRG-DAFLADDLKLIYGGKLLSDDTIIEDVKINPKNFVVVMVAKKQPSRQ 86
Query: 83 GAST 86
+ST
Sbjct: 87 SSST 90
>gi|401419818|ref|XP_003874398.1| putative ubiquitin-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490634|emb|CBZ25896.1| putative ubiquitin-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 317
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 10/114 (8%)
Query: 1 MKVFVKTLKGTHFEIEV-KPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G +EV V++ KK I ET++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGNQHTVEVPDFSITVAEFKKQIAETLE----IPASEQRIIMRGKVLKDDGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
L + + + V+ + +SK S++ ST +A+ A +S+P + QP+TT+
Sbjct: 57 LSAIGMEDGN--VIHVVRSKKSAAVPSTTNASSTLAASDPTSSP--NVQPSTTT 106
>gi|308463692|ref|XP_003094118.1| hypothetical protein CRE_14291 [Caenorhabditis remanei]
gi|308248530|gb|EFO92482.1| hypothetical protein CRE_14291 [Caenorhabditis remanei]
Length = 518
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS---QQMLIHQGKVLKDVT 57
+KVFVK+ +E+E+ P+ VSD+K + + P + Q +I+ GK+LKD
Sbjct: 8 IKVFVKS-PTQKYEVEIAPDATVSDLKDKVLVL-----VPTANKEQICIIYTGKILKDEE 61
Query: 58 TLEENKVAENSFVVVML 74
TL NK+ + V +++
Sbjct: 62 TLSHNKIGDGHTVHLVI 78
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
++V K K ++V E + V DVK+ + + D A Q LI GKVL+D
Sbjct: 2 VQVVFKDFKKNKETLDVDLEHESVKDVKEKLAAARDCD---AEQIKLIFSGKVLQDAKPF 58
Query: 60 EENKVAENSFVVVMLTKSK 78
E + EN V++M++K K
Sbjct: 59 AETGLKENDHVIMMVSKKK 77
>gi|401410066|ref|XP_003884481.1| hypothetical protein NCLIV_048800 [Neospora caninum Liverpool]
gi|325118899|emb|CBZ54451.1| hypothetical protein NCLIV_048800 [Neospora caninum Liverpool]
Length = 405
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K GT F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGTQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDDDLIST 61
Query: 62 NKVAENSFV 70
+ V + +
Sbjct: 62 HDVQDGHII 70
>gi|154345506|ref|XP_001568690.1| putative ubiquitin-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066032|emb|CAM43817.1| putative ubiquitin-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 317
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPED-KVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G +EV + V++ K I ET+ PA +Q +I +GKVLKD
Sbjct: 1 MTVTIKLANGNQHTVEVADFNITVAEFKNQIAETL----AIPAEEQRIILRGKVLKDEGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTS 99
L + + + + V+ +K V+++ A+ VS+ P TS
Sbjct: 57 LSAIGMEDGNVIHVVRSKKSVATAPATNVSSTPGTSDTVTS 97
>gi|440297658|gb|ELP90315.1| UV excision repair protein rad23, putative [Entamoeba invadens
IP1]
Length = 330
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ VKT++GT E EV+ + +K+ I Q D S L+ + ++LKD T T+
Sbjct: 1 MKINVKTVQGTSSEYEVQDATTIGQLKEMIHEKQNIDAASIS---LVLKSRMLKDDTQTI 57
Query: 60 EENKVAENSFVVVMLTKS 77
+ + EN FV++++ K+
Sbjct: 58 QAVGIKENDFVIMVVRKN 75
>gi|149239781|ref|XP_001525766.1| deubiquitination-protection protein dph1 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146449889|gb|EDK44145.1| deubiquitination-protection protein dph1 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 382
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ FE+ P+ V ++K+ I T + PA+ Q LI+ GKVLKD T+E
Sbjct: 4 ITITIKSSGDQKFEVTFDPKITVLELKELIATKSST---PAASQRLIYSGKVLKDDQTVE 60
Query: 61 ENKVAENSFVVVML 74
KV +NS V ++
Sbjct: 61 SYKV-QNSHTVHLV 73
>gi|237833513|ref|XP_002366054.1| ubiquitin, putative [Toxoplasma gondii ME49]
gi|211963718|gb|EEA98913.1| ubiquitin, putative [Toxoplasma gondii ME49]
gi|221508044|gb|EEE33631.1| ubiquitin, putative [Toxoplasma gondii VEG]
Length = 399
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K G+ F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGSQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDADLIST 61
Query: 62 NKVAENSFV 70
+ V + +
Sbjct: 62 HDVQDGHII 70
>gi|221486256|gb|EEE24517.1| ubiquitin, putative [Toxoplasma gondii GT1]
Length = 399
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K G+ F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGSQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDADLIST 61
Query: 62 NKVAENSFV 70
+ V + +
Sbjct: 62 HDVQDGHII 70
>gi|397637202|gb|EJK72575.1| hypothetical protein THAOC_05883 [Thalassiosira oceanica]
Length = 504
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 50/120 (41%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNI-----------ETVQGSDV--------------- 38
VKTLKG F IEV P + V++VK I E V G+ +
Sbjct: 6 VKTLKGGKFTIEVDPSNSVAEVKAVIRGGGDHAHDPEEVVAGNFLNSSWRSSNSKIQTGL 65
Query: 39 ------------------------YPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74
PA+ LIH GKVLKD +E + N F+VVM+
Sbjct: 66 NSEMRLAPTRSHALLFRQENTKSELPAAGMKLIHSGKVLKDDEKIESCNIKPNDFLVVMI 125
>gi|354548233|emb|CCE44970.1| hypothetical protein CPAR2_407730 [Candida parapsilosis]
Length = 364
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +K+ +E+ P K+S++K E V PA Q LI+ GKVLKD T E
Sbjct: 6 VTIKSSGDKKYEVTFNPSIKISELK---ELVAEKSSIPAPSQRLIYSGKVLKDTETAESY 62
Query: 63 KVAENSFVVVMLTKS 77
K+ + L KS
Sbjct: 63 KIQNGH--TIHLVKS 75
>gi|66808013|ref|XP_637729.1| repC-binding protein A [Dictyostelium discoideum AX4]
gi|74853451|sp|Q54LV1.1|RAD23_DICDI RecName: Full=UV excision repair protein RAD23 homolog; AltName:
Full=repC-binding protein A
gi|60466140|gb|EAL64203.1| repC-binding protein A [Dictyostelium discoideum AX4]
Length = 342
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ F+V+M+ K
Sbjct: 58 SYNITDSGFIVMMIKK 73
>gi|157876560|ref|XP_001686626.1| putative ubiquitin-like protein [Leishmania major strain Friedlin]
gi|68129701|emb|CAJ09007.1| putative ubiquitin-like protein [Leishmania major strain Friedlin]
Length = 317
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 16/117 (13%)
Query: 1 MKVFVKTLKGTHFEIEV-KPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G+ +EV V++ KK I E ++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGSQHTVEVPDFSITVAEFKKQIAEALE----IPASEQRIIMRGKVLKDDGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST---QPTTTS 112
L + + + + V+ +K V+ ++ S+ T +++ PTS+ QP+TT+
Sbjct: 57 LSAIGMEDGNVIHVVRSKKNVAVPSSTNASS-------TLAASDPTSSPNVQPSTTT 106
>gi|146103390|ref|XP_001469550.1| putative ubiquitin-like protein [Leishmania infantum JPCM5]
gi|134073920|emb|CAM72659.1| putative ubiquitin-like protein [Leishmania infantum JPCM5]
Length = 317
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 12/115 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS--DVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVT 57
M V +K G+ +EV P+ V+ + KK I E ++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGSQHTVEV-PDFSVTVAEFKKQIAEMLE----IPASEQRIIMRGKVLKDDA 55
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
L + + S V+ + +SK S + AS+ +A+ A +S+P + QP+TT+
Sbjct: 56 VLSAIGMEDGS--VIHVVRSKKSGAAASSTNASSTLAASDPTSSP--NVQPSTTT 106
>gi|238883910|gb|EEQ47548.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 339
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +EI P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEITFDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVT 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|68477671|ref|XP_717148.1| hypothetical protein CaO19.5345 [Candida albicans SC5314]
gi|68477834|ref|XP_717069.1| hypothetical protein CaO19.12805 [Candida albicans SC5314]
gi|46438766|gb|EAK98092.1| hypothetical protein CaO19.12805 [Candida albicans SC5314]
gi|46438848|gb|EAK98173.1| hypothetical protein CaO19.5345 [Candida albicans SC5314]
Length = 339
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +E+ P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEVTFDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVT 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV ++ + + +V E+KV +K E + + + Q LI+ GK+L++ L
Sbjct: 1 MKVTIRNVNKEVYTFDVTGEEKVIQLK---EMIADKHKHLPTWQTLIYSGKILENDNQLS 57
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+ EN F+V M+ K K S
Sbjct: 58 TYNITENGFIVCMVKKPKEES 78
>gi|150864814|ref|XP_001383791.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
gi|149386070|gb|ABN65762.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
Length = 366
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + + + A Q ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPLEVELTDTVLATKEKLAAEKDCE---APQLKFVYSGKVLSDEKTLE 57
Query: 61 ENKVAENSFVVVMLT 75
E K+ E ++ M++
Sbjct: 58 EFKIKEGDSIIFMIS 72
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.308 0.123 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,984,715,115
Number of Sequences: 23463169
Number of extensions: 248922328
Number of successful extensions: 8041020
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 36874
Number of HSP's successfully gapped in prelim test: 66714
Number of HSP's that attempted gapping in prelim test: 5145525
Number of HSP's gapped (non-prelim): 1446513
length of query: 308
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 166
effective length of database: 9,027,425,369
effective search space: 1498552611254
effective search space used: 1498552611254
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 76 (33.9 bits)