Query 021760
Match_columns 308
No_of_seqs 347 out of 1366
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00601 rad23 UV excision re 100.0 2.4E-63 5.2E-68 480.9 28.9 271 1-307 1-278 (378)
2 KOG0011 Nucleotide excision re 100.0 1.7E-60 3.8E-65 443.3 22.7 246 1-307 1-246 (340)
3 cd01807 GDX_N ubiquitin-like d 99.8 3E-19 6.6E-24 135.3 9.5 73 1-76 1-73 (74)
4 cd01805 RAD23_N Ubiquitin-like 99.8 1.1E-18 2.4E-23 132.6 10.2 75 1-78 1-77 (77)
5 cd01797 NIRF_N amino-terminal 99.8 1.5E-18 3.3E-23 133.3 9.1 74 1-77 1-76 (78)
6 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 2.8E-18 6E-23 130.3 8.6 71 1-74 2-72 (73)
7 cd01793 Fubi Fubi ubiquitin-li 99.8 5.2E-18 1.1E-22 128.6 9.4 73 1-78 1-73 (74)
8 PTZ00044 ubiquitin; Provisiona 99.7 7.4E-18 1.6E-22 127.8 9.7 74 1-77 1-74 (76)
9 cd01802 AN1_N ubiquitin-like d 99.7 1.1E-17 2.3E-22 135.2 9.5 75 1-78 28-102 (103)
10 cd01804 midnolin_N Ubiquitin-l 99.7 9.9E-18 2.1E-22 128.7 8.9 73 1-77 2-74 (78)
11 cd01806 Nedd8 Nebb8-like ubiq 99.7 2.4E-17 5.3E-22 124.4 10.2 74 1-77 1-74 (76)
12 cd01792 ISG15_repeat1 ISG15 ub 99.7 1.4E-17 3E-22 128.2 8.3 74 1-77 3-78 (80)
13 cd01810 ISG15_repeat2 ISG15 ub 99.7 2E-17 4.3E-22 125.4 8.9 72 3-77 1-72 (74)
14 cd01803 Ubiquitin Ubiquitin. U 99.7 3.7E-17 8E-22 123.4 9.6 74 1-77 1-74 (76)
15 cd01794 DC_UbP_C dendritic cel 99.7 2.3E-17 5E-22 124.2 8.1 70 3-75 1-70 (70)
16 cd01809 Scythe_N Ubiquitin-lik 99.7 4.7E-17 1E-21 121.6 9.5 72 1-75 1-72 (72)
17 cd01798 parkin_N amino-termina 99.7 3.3E-17 7.1E-22 122.8 8.2 70 3-75 1-70 (70)
18 cd01790 Herp_N Homocysteine-re 99.7 4.8E-17 1E-21 125.1 8.3 73 1-74 2-78 (79)
19 cd01808 hPLIC_N Ubiquitin-like 99.7 6.7E-17 1.5E-21 121.5 8.9 71 1-75 1-71 (71)
20 PF00240 ubiquitin: Ubiquitin 99.7 8.8E-17 1.9E-21 119.5 8.1 69 6-77 1-69 (69)
21 cd01813 UBP_N UBP ubiquitin pr 99.7 2.4E-16 5.3E-21 119.9 8.2 70 1-74 1-73 (74)
22 cd01796 DDI1_N DNA damage indu 99.6 4.9E-16 1.1E-20 117.1 7.8 68 3-73 1-70 (71)
23 cd01812 BAG1_N Ubiquitin-like 99.6 1.5E-15 3.3E-20 113.3 8.3 70 1-74 1-70 (71)
24 cd01800 SF3a120_C Ubiquitin-li 99.6 2.5E-15 5.3E-20 114.6 8.5 68 8-78 5-72 (76)
25 KOG0005 Ubiquitin-like protein 99.6 8.2E-16 1.8E-20 110.5 5.1 70 1-73 1-70 (70)
26 KOG0010 Ubiquitin-like protein 99.5 1.2E-14 2.6E-19 142.8 8.1 77 1-81 16-92 (493)
27 cd01763 Sumo Small ubiquitin-r 99.5 6.2E-14 1.3E-18 109.7 10.0 75 1-78 12-86 (87)
28 smart00213 UBQ Ubiquitin homol 99.5 4.9E-14 1.1E-18 102.1 7.9 64 1-68 1-64 (64)
29 KOG0003 Ubiquitin/60s ribosoma 99.5 2.8E-15 6.1E-20 119.8 -0.2 76 1-79 1-76 (128)
30 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 7E-14 1.5E-18 106.4 5.4 55 19-74 19-74 (75)
31 KOG0004 Ubiquitin/40S ribosoma 99.5 5.2E-14 1.1E-18 119.6 4.7 77 1-80 1-77 (156)
32 cd01814 NTGP5 Ubiquitin-like N 99.4 6.4E-13 1.4E-17 107.9 7.2 78 1-78 5-93 (113)
33 cd01769 UBL Ubiquitin-like dom 99.4 1.6E-12 3.5E-17 95.4 8.0 68 4-74 1-68 (69)
34 cd01799 Hoil1_N Ubiquitin-like 99.4 2.1E-12 4.6E-17 98.5 7.6 65 6-74 8-74 (75)
35 PF11976 Rad60-SLD: Ubiquitin- 99.3 7.3E-12 1.6E-16 93.9 8.3 71 1-74 1-72 (72)
36 cd01795 USP48_C USP ubiquitin- 99.1 1.7E-10 3.6E-15 91.7 7.2 63 12-77 16-79 (107)
37 PF00627 UBA: UBA/TS-N domain; 99.1 1.1E-10 2.4E-15 77.1 5.2 36 172-210 2-37 (37)
38 PF09280 XPC-binding: XPC-bind 99.1 7.6E-11 1.6E-15 85.9 2.7 31 277-307 1-31 (59)
39 PF13881 Rad60-SLD_2: Ubiquiti 99.0 1.8E-09 4E-14 88.3 10.3 76 1-76 3-89 (111)
40 cd01789 Alp11_N Ubiquitin-like 99.0 1.8E-09 3.9E-14 84.0 8.6 71 2-75 3-81 (84)
41 KOG4248 Ubiquitin-like protein 99.0 6.1E-10 1.3E-14 117.3 6.9 70 2-75 4-73 (1143)
42 KOG0001 Ubiquitin and ubiquiti 99.0 5E-09 1.1E-13 76.2 9.8 72 3-77 2-73 (75)
43 cd00194 UBA Ubiquitin Associat 98.9 2.6E-09 5.7E-14 70.5 4.9 38 172-212 1-38 (38)
44 PLN02560 enoyl-CoA reductase 98.9 5E-09 1.1E-13 99.9 8.5 70 1-72 1-80 (308)
45 cd01788 ElonginB Ubiquitin-lik 98.9 7.3E-09 1.6E-13 84.2 7.7 73 1-76 1-81 (119)
46 smart00165 UBA Ubiquitin assoc 98.9 3.3E-09 7.1E-14 69.7 4.5 37 172-211 1-37 (37)
47 PF14560 Ubiquitin_2: Ubiquiti 98.8 1.3E-08 2.8E-13 79.4 7.8 73 2-77 3-85 (87)
48 cd01801 Tsc13_N Ubiquitin-like 98.8 1.9E-08 4E-13 76.8 7.0 69 2-72 2-74 (77)
49 cd00196 UBQ Ubiquitin-like pro 98.6 3.3E-07 7.2E-12 63.0 8.0 67 5-74 2-68 (69)
50 PF11543 UN_NPL4: Nuclear pore 98.6 9.9E-08 2.1E-12 73.7 5.3 69 1-73 5-78 (80)
51 cd01811 OASL_repeat1 2'-5' oli 98.4 2.3E-06 5E-11 64.7 8.4 72 1-76 1-77 (80)
52 KOG0006 E3 ubiquitin-protein l 98.3 9.9E-07 2.2E-11 83.2 6.3 72 1-75 1-75 (446)
53 KOG1872 Ubiquitin-specific pro 98.2 4.7E-06 1E-10 82.4 7.7 71 3-77 6-77 (473)
54 KOG1769 Ubiquitin-like protein 98.1 2.3E-05 5E-10 62.5 8.5 72 2-76 22-93 (99)
55 KOG3493 Ubiquitin-like protein 98.0 1.9E-06 4.1E-11 63.3 1.5 69 2-73 3-71 (73)
56 PF10302 DUF2407: DUF2407 ubiq 97.8 6.8E-05 1.5E-09 60.0 6.3 61 2-63 2-65 (97)
57 KOG4495 RNA polymerase II tran 97.8 3.7E-05 8.1E-10 60.9 4.6 62 1-65 1-65 (110)
58 PF08817 YukD: WXG100 protein 97.5 0.00021 4.5E-09 54.7 5.4 71 2-72 4-78 (79)
59 PF02845 CUE: CUE domain; Int 97.4 0.00023 5E-09 48.0 4.4 39 172-213 1-41 (42)
60 COG5417 Uncharacterized small 97.3 0.0011 2.5E-08 50.2 6.8 68 5-72 11-80 (81)
61 PF00789 UBX: UBX domain; Int 97.2 0.0021 4.6E-08 49.0 8.4 68 2-72 8-80 (82)
62 smart00166 UBX Domain present 97.2 0.0027 5.8E-08 48.6 8.4 68 2-72 6-78 (80)
63 COG5227 SMT3 Ubiquitin-like pr 97.2 0.0014 3.1E-08 51.5 6.7 69 3-74 27-95 (103)
64 KOG0944 Ubiquitin-specific pro 97.2 0.00025 5.3E-09 73.0 3.0 43 170-215 633-675 (763)
65 cd01767 UBX UBX (ubiquitin reg 97.1 0.0045 9.7E-08 46.9 8.7 67 2-73 4-75 (77)
66 PF11470 TUG-UBL1: GLUT4 regul 97.0 0.0033 7.2E-08 46.7 7.0 63 7-72 3-65 (65)
67 cd01770 p47_UBX p47-like ubiqu 96.9 0.007 1.5E-07 46.5 8.4 67 2-71 6-75 (79)
68 KOG1639 Steroid reductase requ 96.9 0.0022 4.7E-08 59.2 6.4 70 1-72 1-76 (297)
69 KOG0013 Uncharacterized conser 96.9 0.0018 3.9E-08 58.3 5.5 61 9-72 155-215 (231)
70 cd01772 SAKS1_UBX SAKS1-like U 96.9 0.009 2E-07 45.7 8.7 67 2-72 6-77 (79)
71 KOG4583 Membrane-associated ER 96.8 0.00027 5.9E-09 67.4 0.1 76 2-78 11-90 (391)
72 KOG0418 Ubiquitin-protein liga 96.7 0.0022 4.7E-08 56.8 4.6 47 164-213 154-200 (200)
73 TIGR00601 rad23 UV excision re 96.6 0.0024 5.3E-08 62.8 4.8 38 172-212 337-374 (378)
74 smart00546 CUE Domain that may 96.5 0.0073 1.6E-07 40.8 5.3 39 172-213 2-42 (43)
75 cd01773 Faf1_like1_UBX Faf1 ik 96.5 0.026 5.7E-07 43.8 8.8 69 2-74 7-80 (82)
76 PF13019 Telomere_Sde2: Telome 96.4 0.025 5.5E-07 49.3 9.2 75 1-78 1-87 (162)
77 cd01774 Faf1_like2_UBX Faf1 ik 96.3 0.031 6.7E-07 43.6 8.5 68 1-72 5-82 (85)
78 KOG3206 Alpha-tubulin folding 96.2 0.012 2.6E-07 53.0 6.2 71 2-75 3-81 (234)
79 cd01771 Faf1_UBX Faf1 UBX doma 95.8 0.075 1.6E-06 40.9 8.5 67 2-72 6-77 (80)
80 PF15044 CLU_N: Mitochondrial 95.2 0.033 7.3E-07 42.5 4.4 56 17-74 1-57 (76)
81 KOG0011 Nucleotide excision re 95.0 0.029 6.2E-07 53.8 4.5 39 172-213 298-336 (340)
82 PF09288 UBA_3: Fungal ubiquit 95.0 0.029 6.2E-07 40.3 3.2 23 173-198 10-32 (55)
83 PF11626 Rap1_C: TRF2-interact 94.8 0.057 1.2E-06 42.1 4.9 35 176-213 1-35 (87)
84 PRK06437 hypothetical protein; 94.7 0.23 4.9E-06 36.9 7.7 59 4-74 4-62 (67)
85 PF09379 FERM_N: FERM N-termin 94.4 0.25 5.4E-06 37.0 7.5 68 5-74 1-74 (80)
86 cd00754 MoaD Ubiquitin domain 94.2 0.24 5.2E-06 37.1 6.9 57 12-73 17-74 (80)
87 KOG0010 Ubiquitin-like protein 94.1 0.069 1.5E-06 53.7 4.9 42 169-213 451-493 (493)
88 KOG0012 DNA damage inducible p 94.0 0.077 1.7E-06 51.5 4.8 69 1-72 1-73 (380)
89 PLN02799 Molybdopterin synthas 93.8 0.25 5.5E-06 37.6 6.6 66 1-73 2-76 (82)
90 PF14453 ThiS-like: ThiS-like 93.5 0.45 9.7E-06 34.5 6.8 56 1-75 1-56 (57)
91 smart00727 STI1 Heat shock cha 93.4 0.11 2.3E-06 34.6 3.3 27 278-305 6-32 (41)
92 PRK08364 sulfur carrier protei 93.3 0.62 1.3E-05 34.7 7.7 50 12-73 15-64 (70)
93 PF07499 RuvA_C: RuvA, C-termi 93.1 0.12 2.5E-06 35.7 3.2 37 172-211 3-39 (47)
94 PRK06488 sulfur carrier protei 93.0 0.4 8.7E-06 35.0 6.3 60 1-74 1-60 (65)
95 KOG2561 Adaptor protein NUB1, 93.0 0.11 2.4E-06 51.9 4.0 59 14-75 53-111 (568)
96 PF06972 DUF1296: Protein of u 92.8 0.3 6.4E-06 35.6 5.1 40 172-212 5-44 (60)
97 cd06409 PB1_MUG70 The MUG70 pr 92.6 1.3 2.8E-05 34.8 8.8 74 2-75 2-84 (86)
98 cd06406 PB1_P67 A PB1 domain i 91.9 0.53 1.2E-05 36.4 5.8 36 12-50 12-47 (80)
99 PF14555 UBA_4: UBA-like domai 91.6 0.58 1.3E-05 31.5 5.2 37 173-212 1-38 (43)
100 KOG2561 Adaptor protein NUB1, 90.8 0.32 6.9E-06 48.7 4.5 42 173-217 430-471 (568)
101 cd06407 PB1_NLP A PB1 domain i 90.7 1.7 3.7E-05 33.6 7.7 71 1-75 1-81 (82)
102 PF12754 Blt1: Cell-cycle cont 90.4 0.08 1.7E-06 50.5 0.0 60 2-64 80-159 (309)
103 smart00295 B41 Band 4.1 homolo 90.0 3.3 7.1E-05 36.0 10.0 71 2-75 5-83 (207)
104 PF11620 GABP-alpha: GA-bindin 89.6 0.99 2.1E-05 35.3 5.4 63 12-77 4-66 (88)
105 PF10209 DUF2340: Uncharacteri 89.5 1.5 3.2E-05 36.6 6.8 60 16-75 21-108 (122)
106 PF02597 ThiS: ThiS family; I 89.3 1.2 2.5E-05 32.9 5.6 60 12-74 13-72 (77)
107 PF14836 Ubiquitin_3: Ubiquiti 89.3 2.4 5.2E-05 33.4 7.4 62 11-76 14-81 (88)
108 PRK05863 sulfur carrier protei 89.1 1.4 3.1E-05 32.2 5.8 60 1-74 1-60 (65)
109 PF10790 DUF2604: Protein of U 89.0 2 4.2E-05 32.0 6.3 67 9-75 4-71 (76)
110 TIGR01682 moaD molybdopterin c 88.9 2.4 5.2E-05 32.0 7.2 58 9-73 13-74 (80)
111 PRK05659 sulfur carrier protei 88.3 2.2 4.8E-05 30.9 6.4 61 1-74 1-61 (66)
112 TIGR01687 moaD_arch MoaD famil 88.3 3.4 7.4E-05 31.6 7.8 59 11-73 16-82 (88)
113 PRK08053 sulfur carrier protei 87.6 3.2 6.8E-05 30.4 6.9 61 1-74 1-61 (66)
114 PRK06944 sulfur carrier protei 85.9 5.1 0.00011 28.8 7.2 60 1-74 1-60 (65)
115 PF08938 HBS1_N: HBS1 N-termin 85.7 0.36 7.7E-06 37.0 0.9 26 188-213 45-70 (79)
116 smart00666 PB1 PB1 domain. Pho 85.2 4.3 9.4E-05 30.3 6.8 45 2-50 3-47 (81)
117 KOG2086 Protein tyrosine phosp 84.9 1.8 3.9E-05 42.6 5.5 65 2-68 307-374 (380)
118 KOG2982 Uncharacterized conser 84.9 0.87 1.9E-05 44.0 3.3 55 16-73 353-415 (418)
119 COG5207 UBP14 Isopeptidase T [ 84.0 1.5 3.2E-05 44.9 4.5 39 173-214 559-598 (749)
120 cd01760 RBD Ubiquitin-like dom 83.5 3.5 7.6E-05 31.2 5.5 64 3-72 2-69 (72)
121 cd00565 ThiS ThiaminS ubiquiti 83.4 4.2 9E-05 29.5 5.8 57 8-74 4-60 (65)
122 PF11069 DUF2870: Protein of u 82.9 2.1 4.5E-05 34.3 4.2 33 45-77 3-36 (98)
123 COG5207 UBP14 Isopeptidase T [ 82.9 0.45 9.7E-06 48.5 0.5 38 172-212 621-658 (749)
124 COG5100 NPL4 Nuclear pore prot 82.7 5.1 0.00011 39.9 7.6 73 1-75 1-79 (571)
125 COG2104 ThiS Sulfur transfer p 82.4 7.2 0.00016 29.1 6.7 63 1-74 1-63 (68)
126 PRK06083 sulfur carrier protei 81.8 6.4 0.00014 30.6 6.5 57 8-74 23-79 (84)
127 PF07223 DUF1421: Protein of u 81.3 1.8 3.9E-05 42.5 4.0 30 165-197 314-343 (358)
128 PF14732 UAE_UbL: Ubiquitin/SU 81.1 3.2 7E-05 32.4 4.7 51 20-73 8-67 (87)
129 PRK07696 sulfur carrier protei 80.7 8.1 0.00018 28.4 6.5 61 1-74 1-62 (67)
130 cd06408 PB1_NoxR The PB1 domai 80.5 7.4 0.00016 30.5 6.4 45 3-51 3-48 (86)
131 smart00455 RBD Raf-like Ras-bi 80.5 6.4 0.00014 29.4 5.9 50 4-56 3-54 (70)
132 TIGR02958 sec_mycoba_snm4 secr 79.6 13 0.00028 37.7 9.6 73 2-75 4-80 (452)
133 PRK07440 hypothetical protein; 79.5 8.3 0.00018 28.7 6.3 57 8-74 9-65 (70)
134 KOG0944 Ubiquitin-specific pro 79.5 2.7 5.8E-05 44.2 4.7 40 173-215 572-612 (763)
135 cd01611 GABARAP Ubiquitin doma 79.4 11 0.00024 30.8 7.5 58 16-76 46-107 (112)
136 TIGR01683 thiS thiamine biosyn 79.2 6.7 0.00014 28.4 5.6 57 8-74 3-59 (64)
137 smart00727 STI1 Heat shock cha 79.2 1.6 3.5E-05 28.7 2.1 24 277-302 17-40 (41)
138 PF00564 PB1: PB1 domain; Int 78.9 7.5 0.00016 29.1 6.0 45 2-50 3-48 (84)
139 cd05992 PB1 The PB1 domain is 77.5 9.5 0.00021 28.3 6.2 45 2-50 2-47 (81)
140 PF08337 Plexin_cytopl: Plexin 77.2 5.1 0.00011 41.4 5.9 65 11-76 202-290 (539)
141 PRK11840 bifunctional sulfur c 77.1 7.1 0.00015 37.9 6.5 62 1-75 1-62 (326)
142 PRK12332 tsf elongation factor 75.4 5 0.00011 36.2 4.8 36 174-212 6-42 (198)
143 PF14451 Ub-Mut7C: Mut7-C ubiq 74.4 13 0.00028 28.7 6.2 53 10-74 22-75 (81)
144 TIGR00116 tsf translation elon 73.4 5.6 0.00012 38.0 4.8 36 174-212 6-42 (290)
145 PF02991 Atg8: Autophagy prote 73.1 16 0.00036 29.5 6.8 62 9-75 33-98 (104)
146 PF02196 RBD: Raf-like Ras-bin 73.1 21 0.00045 26.6 6.9 57 3-62 3-61 (71)
147 cd06398 PB1_Joka2 The PB1 doma 72.7 25 0.00053 27.7 7.5 70 3-76 3-88 (91)
148 cd01787 GRB7_RA RA (RAS-associ 72.6 28 0.00061 27.2 7.7 68 3-72 5-82 (85)
149 PTZ00380 microtubule-associate 71.6 18 0.00039 30.1 6.8 59 15-76 45-106 (121)
150 PF08587 UBA_2: Ubiquitin asso 70.9 1.4 3E-05 30.6 0.0 20 176-198 6-26 (46)
151 KOG4250 TANK binding protein k 70.9 13 0.00029 39.5 7.2 66 8-78 322-389 (732)
152 PF09494 Slx4: Slx4 endonuclea 69.9 4.1 8.9E-05 29.8 2.4 20 286-305 2-21 (64)
153 cd06396 PB1_NBR1 The PB1 domai 69.7 19 0.00041 27.9 6.1 35 2-40 2-38 (81)
154 PF00788 RA: Ras association ( 69.7 45 0.00096 25.0 8.5 55 3-58 5-69 (93)
155 PF14533 USP7_C2: Ubiquitin-sp 69.7 14 0.0003 33.5 6.3 48 12-62 35-90 (213)
156 cd01768 RA RA (Ras-associating 69.4 46 0.001 25.0 9.2 66 10-76 12-86 (87)
157 PF08825 E2_bind: E2 binding d 69.1 6.2 0.00013 30.7 3.4 58 15-73 1-69 (84)
158 PF12436 USP7_ICP0_bdg: ICP0-b 68.9 12 0.00026 34.7 5.8 71 2-75 70-152 (249)
159 PF12616 DUF3775: Protein of u 68.7 6 0.00013 30.2 3.1 40 175-215 20-60 (75)
160 CHL00098 tsf elongation factor 68.3 9.1 0.0002 34.6 4.8 36 174-212 3-39 (200)
161 KOG1364 Predicted ubiquitin re 68.2 5.8 0.00013 38.7 3.7 66 2-69 279-349 (356)
162 PF10407 Cytokin_check_N: Cdc1 67.9 23 0.00049 26.9 6.1 63 11-76 3-71 (73)
163 cd06411 PB1_p51 The PB1 domain 67.7 22 0.00047 27.5 6.0 36 12-50 8-43 (78)
164 PRK09377 tsf elongation factor 66.9 9.4 0.0002 36.5 4.8 36 174-212 7-43 (290)
165 PF15652 Tox-SHH: HNH/Endo VII 65.8 7.9 0.00017 31.2 3.4 31 168-201 67-97 (100)
166 PRK06369 nac nascent polypepti 65.7 15 0.00033 30.4 5.1 38 173-213 77-115 (115)
167 smart00144 PI3K_rbd PI3-kinase 65.2 42 0.00091 27.0 7.7 73 3-76 20-105 (108)
168 PF12053 DUF3534: Domain of un 65.0 46 0.00099 28.6 8.1 74 1-76 1-81 (145)
169 cd01612 APG12_C Ubiquitin-like 64.2 67 0.0014 25.0 8.7 59 15-76 20-82 (87)
170 PRK13901 ruvA Holliday junctio 63.6 9.9 0.00022 34.3 4.0 30 171-203 143-172 (196)
171 PRK11130 moaD molybdopterin sy 62.8 50 0.0011 24.9 7.3 54 15-73 19-75 (81)
172 KOG3391 Transcriptional co-rep 62.6 8.3 0.00018 32.8 3.1 30 51-80 112-141 (151)
173 PF09722 DUF2384: Protein of u 62.6 20 0.00042 25.0 4.7 22 273-294 27-48 (54)
174 KOG2507 Ubiquitin regulatory p 62.2 15 0.00032 37.0 5.2 73 2-77 316-393 (506)
175 KOG2689 Predicted ubiquitin re 62.1 9.7 0.00021 36.0 3.8 35 177-214 5-41 (290)
176 KOG2689 Predicted ubiquitin re 60.6 25 0.00053 33.4 6.1 70 2-72 212-284 (290)
177 PF00794 PI3K_rbd: PI3-kinase 60.1 32 0.00069 27.3 6.1 75 2-76 18-103 (106)
178 PF14327 CSTF2_hinge: Hinge do 59.6 7.9 0.00017 29.9 2.4 24 281-306 43-66 (84)
179 TIGR00084 ruvA Holliday juncti 58.0 11 0.00023 33.7 3.3 29 171-202 146-174 (191)
180 cd01764 Urm1 Urm1-like ubuitin 55.6 21 0.00045 28.1 4.2 54 15-73 23-88 (94)
181 PF06234 TmoB: Toluene-4-monoo 54.1 63 0.0014 25.3 6.5 62 13-75 17-84 (85)
182 TIGR00264 alpha-NAC-related pr 52.7 31 0.00068 28.5 4.9 36 173-211 79-115 (116)
183 PF11816 DUF3337: Domain of un 52.5 51 0.0011 31.8 7.2 64 14-77 251-329 (331)
184 PF02017 CIDE-N: CIDE-N domain 52.4 35 0.00076 26.3 4.8 65 3-76 5-72 (78)
185 cd06410 PB1_UP2 Uncharacterize 52.3 55 0.0012 26.1 6.1 40 5-48 17-56 (97)
186 PRK14602 ruvA Holliday junctio 52.0 16 0.00034 33.0 3.4 28 170-200 153-180 (203)
187 PF02954 HTH_8: Bacterial regu 49.8 17 0.00037 24.1 2.4 27 187-215 5-31 (42)
188 PRK08769 DNA polymerase III su 49.5 33 0.00072 33.1 5.3 40 171-213 173-212 (319)
189 PF02505 MCR_D: Methyl-coenzym 49.3 35 0.00076 29.6 4.8 48 12-67 76-124 (153)
190 PRK14606 ruvA Holliday junctio 48.8 22 0.00048 31.7 3.7 28 171-201 142-169 (188)
191 PF08783 DWNN: DWNN domain; I 48.4 54 0.0012 24.9 5.2 33 3-35 1-35 (74)
192 PF02824 TGS: TGS domain; Int 47.0 56 0.0012 23.3 5.0 59 3-73 1-59 (60)
193 TIGR03260 met_CoM_red_D methyl 47.0 40 0.00086 29.1 4.8 43 13-62 76-118 (150)
194 PF14848 HU-DNA_bdg: DNA-bindi 46.2 45 0.00097 27.5 5.0 38 172-215 31-70 (124)
195 PRK01777 hypothetical protein; 46.2 94 0.002 24.6 6.6 69 1-74 4-75 (95)
196 PF14847 Ras_bdg_2: Ras-bindin 45.4 67 0.0015 26.0 5.7 57 3-62 3-70 (105)
197 COG5131 URM1 Ubiquitin-like pr 45.4 1.3E+02 0.0027 24.0 6.9 64 9-75 16-92 (96)
198 COG0632 RuvA Holliday junction 45.0 22 0.00048 32.1 3.2 34 171-207 155-189 (201)
199 cd01817 RGS12_RBD Ubiquitin do 44.5 88 0.0019 23.8 5.8 46 6-54 5-52 (73)
200 KOG4842 Protein involved in si 44.4 5.7 0.00012 37.2 -0.7 61 8-72 10-70 (278)
201 PRK14604 ruvA Holliday junctio 44.3 23 0.0005 31.7 3.2 28 172-202 149-176 (195)
202 KOG3439 Protein conjugation fa 44.2 81 0.0018 26.0 5.9 60 13-75 47-110 (116)
203 PRK14600 ruvA Holliday junctio 44.2 27 0.00059 31.1 3.5 28 171-201 144-171 (186)
204 PF11333 DUF3135: Protein of u 43.8 14 0.0003 28.8 1.4 25 282-306 2-26 (83)
205 PRK14601 ruvA Holliday junctio 42.7 29 0.00063 30.9 3.5 27 171-200 141-167 (183)
206 smart00266 CAD Domains present 42.7 84 0.0018 24.0 5.5 49 21-75 19-69 (74)
207 COG3760 Uncharacterized conser 41.7 48 0.001 28.8 4.5 60 2-74 47-106 (164)
208 PRK07993 DNA polymerase III su 40.8 53 0.0012 31.8 5.3 38 173-213 170-208 (334)
209 COG0264 Tsf Translation elonga 40.8 47 0.001 31.8 4.8 36 174-211 7-42 (296)
210 PF09469 Cobl: Cordon-bleu ubi 40.6 44 0.00095 25.8 3.7 43 29-77 2-47 (79)
211 PRK14603 ruvA Holliday junctio 40.4 33 0.00072 30.8 3.6 27 171-200 151-177 (197)
212 COG0089 RplW Ribosomal protein 40.4 1E+02 0.0022 24.6 5.9 60 10-72 21-90 (94)
213 PF00276 Ribosomal_L23: Riboso 40.2 59 0.0013 25.4 4.6 41 11-54 21-62 (91)
214 KOG4248 Ubiquitin-like protein 39.4 13 0.00028 41.1 0.9 69 6-77 330-398 (1143)
215 cd01775 CYR1_RA Ubiquitin doma 39.3 1.8E+02 0.0039 23.4 7.1 32 4-35 6-37 (97)
216 PF14053 DUF4248: Domain of un 39.2 30 0.00066 25.8 2.6 21 285-305 24-44 (69)
217 KOG4598 Putative ubiquitin-spe 39.1 60 0.0013 35.0 5.5 61 12-77 878-944 (1203)
218 cd06539 CIDE_N_A CIDE_N domain 38.8 79 0.0017 24.4 4.8 47 21-72 21-69 (78)
219 PF12436 USP7_ICP0_bdg: ICP0-b 37.6 63 0.0014 29.9 5.1 43 2-47 178-223 (249)
220 PF01988 VIT1: VIT family; In 37.0 55 0.0012 29.4 4.5 40 170-213 80-119 (213)
221 COG3609 Predicted transcriptio 36.2 44 0.00094 26.1 3.2 30 166-197 7-38 (89)
222 PF04126 Cyclophil_like: Cyclo 35.0 24 0.00052 29.0 1.6 29 1-30 1-29 (120)
223 PRK05738 rplW 50S ribosomal pr 34.5 1E+02 0.0023 24.2 5.1 40 10-52 20-60 (92)
224 KOG4146 Ubiquitin-like protein 34.4 2.4E+02 0.0053 22.6 7.4 54 19-76 34-98 (101)
225 KOG4572 Predicted DNA-binding 34.4 78 0.0017 34.6 5.6 62 9-73 3-68 (1424)
226 PF03333 PapB: Adhesin biosynt 34.3 58 0.0013 25.8 3.6 41 164-216 16-56 (91)
227 COG5222 Uncharacterized conser 33.0 1.2E+02 0.0026 29.4 6.1 36 15-51 18-54 (427)
228 PRK09814 beta-1,6-galactofuran 32.9 49 0.0011 31.3 3.7 38 178-217 208-264 (333)
229 cd01615 CIDE_N CIDE_N domain, 32.6 1.1E+02 0.0023 23.6 4.7 38 21-61 21-60 (78)
230 PF08169 RBB1NT: RBB1NT (NUC16 32.5 29 0.00062 27.8 1.6 21 194-217 75-96 (96)
231 PF03474 DMA: DMRTA motif; In 32.3 57 0.0012 21.8 2.8 25 187-211 15-39 (39)
232 PF11547 E3_UbLigase_EDD: E3 u 31.9 1.7E+02 0.0037 20.6 5.1 37 173-212 10-48 (53)
233 cd06397 PB1_UP1 Uncharacterize 30.9 1.8E+02 0.0039 22.6 5.7 57 2-62 2-63 (82)
234 PF03931 Skp1_POZ: Skp1 family 29.8 38 0.00083 24.2 1.8 32 1-32 1-32 (62)
235 PF11372 DUF3173: Domain of un 29.3 64 0.0014 23.6 2.8 21 176-199 6-26 (59)
236 cd01782 AF6_RA_repeat1 Ubiquit 28.3 3.4E+02 0.0073 22.3 7.2 35 1-35 24-60 (112)
237 KOG4261 Talin [Cytoskeleton] 28.3 1.2E+02 0.0027 32.9 5.8 63 10-72 12-80 (1003)
238 PRK06090 DNA polymerase III su 28.2 1E+02 0.0022 29.7 5.0 38 171-213 168-205 (319)
239 cd01777 SNX27_RA Ubiquitin dom 28.1 1.2E+02 0.0026 23.9 4.4 40 2-44 3-42 (87)
240 PF14807 AP4E_app_platf: Adapt 28.1 1.4E+02 0.003 24.2 4.9 63 13-76 23-86 (104)
241 cd06536 CIDE_N_ICAD CIDE_N dom 27.7 1.4E+02 0.003 23.1 4.6 49 21-75 21-73 (80)
242 cd06537 CIDE_N_B CIDE_N domain 27.7 1.4E+02 0.0031 23.2 4.6 48 21-73 21-69 (81)
243 COG2080 CoxS Aerobic-type carb 27.5 1.3E+02 0.0028 26.3 4.9 68 1-71 2-73 (156)
244 KOG4147 Uncharacterized conser 27.4 71 0.0015 26.3 3.1 59 16-74 28-112 (127)
245 PF10440 WIYLD: Ubiquitin-bind 27.3 90 0.0019 23.2 3.4 25 170-197 9-33 (65)
246 cd01616 TGS The TGS domain, na 26.6 1.9E+02 0.0041 18.8 6.4 54 8-73 6-59 (60)
247 KOG3751 Growth factor receptor 26.5 1.6E+02 0.0034 30.7 6.0 74 3-78 189-274 (622)
248 PF06487 SAP18: Sin3 associate 26.3 75 0.0016 26.4 3.2 62 11-74 37-120 (120)
249 KOG3073 Protein required for 1 26.2 94 0.002 28.4 3.9 35 39-73 156-192 (236)
250 PF10346 Con-6: Conidiation pr 26.0 53 0.0012 21.6 1.8 17 188-204 2-18 (36)
251 PF14533 USP7_C2: Ubiquitin-sp 25.8 61 0.0013 29.3 2.8 51 10-63 132-194 (213)
252 cd06404 PB1_aPKC PB1 domain is 25.2 3.3E+02 0.0072 21.2 6.5 33 2-35 2-34 (83)
253 cd01818 TIAM1_RBD Ubiquitin do 25.1 2.1E+02 0.0046 22.0 5.1 37 5-44 4-40 (77)
254 PF13767 DUF4168: Domain of un 24.6 53 0.0011 24.7 1.8 21 282-302 57-77 (78)
255 PF14689 SPOB_a: Sensor_kinase 24.3 85 0.0018 22.6 2.8 12 200-211 36-47 (62)
256 PF09030 Creb_binding: Creb bi 24.3 64 0.0014 26.2 2.3 29 277-305 60-91 (104)
257 PF04110 APG12: Ubiquitin-like 24.3 2.8E+02 0.0061 21.7 5.9 60 13-75 18-81 (87)
258 PF11834 DUF3354: Domain of un 23.9 1E+02 0.0022 23.0 3.2 43 21-73 26-69 (69)
259 cd06538 CIDE_N_FSP27 CIDE_N do 23.8 1.9E+02 0.0041 22.4 4.7 49 21-75 21-70 (79)
260 PF03671 Ufm1: Ubiquitin fold 23.6 3.4E+02 0.0073 20.7 6.3 57 14-73 19-76 (76)
261 PRK14605 ruvA Holliday junctio 23.3 86 0.0019 28.0 3.2 28 171-201 147-174 (194)
262 PF09138 Urm1: Urm1 (Ubiquitin 23.3 44 0.00096 26.7 1.2 62 10-76 17-93 (96)
263 PF01577 Peptidase_S30: Potyvi 23.2 1.8E+02 0.0038 26.4 5.4 72 3-76 152-224 (245)
264 PF07261 DnaB_2: Replication i 23.0 32 0.0007 25.1 0.3 40 168-211 14-54 (77)
265 PF02192 PI3K_p85B: PI3-kinase 22.8 98 0.0021 23.7 3.0 23 13-35 2-24 (78)
266 PF02671 PAH: Paired amphipath 22.7 66 0.0014 21.5 1.9 24 285-308 24-47 (47)
267 PF10025 DUF2267: Uncharacteri 22.6 1E+02 0.0023 25.1 3.4 27 171-200 1-29 (125)
268 KOG4361 BCL2-associated athano 22.4 33 0.00072 33.6 0.4 61 13-76 73-139 (344)
269 PF07462 MSP1_C: Merozoite sur 22.2 3.6E+02 0.0079 28.2 7.7 20 164-183 350-369 (574)
270 cd01766 Ufm1 Urm1-like ubiquit 22.2 3.7E+02 0.008 20.6 6.0 60 15-77 20-80 (82)
271 PF13382 Adenine_deam_C: Adeni 22.0 46 0.00099 29.3 1.2 21 166-186 69-92 (171)
272 TIGR03636 L23_arch archaeal ri 21.9 1.9E+02 0.0042 22.0 4.5 33 11-46 15-47 (77)
273 KOG1661 Protein-L-isoaspartate 21.7 96 0.0021 28.7 3.2 29 168-199 6-35 (237)
274 smart00314 RA Ras association 21.6 3.5E+02 0.0077 20.2 9.9 66 10-76 15-88 (90)
275 PF07462 MSP1_C: Merozoite sur 21.5 2E+02 0.0044 29.9 5.7 6 168-173 322-327 (574)
276 PF06006 DUF905: Bacterial pro 21.5 71 0.0015 24.1 1.9 19 184-203 5-23 (70)
277 PF03607 DCX: Doublecortin; I 21.2 2E+02 0.0043 20.5 4.2 45 20-73 8-54 (60)
278 KOG2013 SMT3/SUMO-activating c 21.1 1.3E+02 0.0029 31.1 4.3 57 13-73 445-509 (603)
279 KOG2660 Locus-specific chromos 21.1 85 0.0018 30.5 2.8 48 14-62 167-214 (331)
280 cd06405 PB1_Mekk2_3 The PB1 do 21.0 3.8E+02 0.0082 20.6 5.7 43 2-51 2-44 (79)
281 smart00804 TAP_C C-terminal do 20.8 3.3E+02 0.0071 19.9 5.3 44 171-217 11-60 (63)
282 PF03765 CRAL_TRIO_N: CRAL/TRI 20.1 2.8E+02 0.0062 18.9 4.8 25 187-211 29-53 (55)
283 PF04361 DUF494: Protein of un 20.1 1.3E+02 0.0028 26.0 3.5 24 171-197 22-45 (155)
284 PF14327 CSTF2_hinge: Hinge do 20.0 80 0.0017 24.3 2.0 22 286-307 35-56 (84)
No 1
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-63 Score=480.86 Aligned_cols=271 Identities=39% Similarity=0.624 Sum_probs=180.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||+++|++|.|+|++++||.+||++|+...|++.+++++|||||+||+|+|+++|++|||+++++|+||++|+|..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~~ 80 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKTG 80 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCCC
Confidence 89999999999999999999999999999999987555899999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCccc
Q 021760 81 SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAP-APAPAPAPAPAPAPVSSVSDVY 159 (308)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 159 (308)
....+.+...+.+++.++.+.+. +.+....++++.++. . . .+.. .+ .++.. .+.+.+. ....
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~----~-~----~~~~~~~-~~~~~--~~~~~~~-~~~~ 143 (378)
T TIGR00601 81 TGKSAPPAATPTSAPTPTPSPPA----SPASGMSAAPASAVE----E-K----SPSEESA-TATAP--ESPSTSV-PSSG 143 (378)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCc----c-c----cccCCCC-CCCCC--CCCCccc-cccC
Confidence 33222111011010111000000 000000000000000 0 0 0000 00 00000 0000000 0101
Q ss_pred cccccccccCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCCCCCCCCccccCCCCCCCCCCCcc
Q 021760 160 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239 (308)
Q Consensus 160 ~~~~s~l~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~ 239 (308)
..+.|+||+|++||++|++||+|| |+|+||+||||||||||||||||||+|||++++...+ ... +...
T Consensus 144 ~~~~s~l~~g~~~e~~I~~i~eMG---f~R~qV~~ALRAafNNPdRAVEYL~tGIP~~~~~~~~----~~~----~~~~- 211 (378)
T TIGR00601 144 SDAASTLVVGSERETTIEEIMEMG---YEREEVERALRAAFNNPDRAVEYLLTGIPEDPEQPEP----VQQ----TAAS- 211 (378)
T ss_pred CCcccccccchHHHHHHHHHHHhC---CCHHHHHHHHHHHhCCHHHHHHHHHhCCCcccccccc----CCC----cccc-
Confidence 246789999999999999999999 9999999999999999999999999999998762111 100 0000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcCCCCCCCC------CCCCCCchHHhhChHHHHHHHHHHHhChhhHHHHHhcC
Q 021760 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMG------SNAGAGTLDFLRNSQQFQALRTMVQANPQILQQWALIV 307 (308)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~lf~~a~~~~~------~~~~~~~l~~Lr~~pqf~~lRq~vqqnP~~L~~~L~~~ 307 (308)
. + ....+.+..+ |||++++.++. .+.|+++|+|||++|||++||++||+||+||++|||++
T Consensus 212 ~-----~-~~~~~~~~~~-~lf~~a~~~~~~~~~~~~~~g~~~l~~Lr~~pqf~~lR~~vq~NP~~L~~lLqql 278 (378)
T TIGR00601 212 T-----A-AATTETPQHG-SVFEQAAQGGTEQPATEAAQGGNPLEFLRNQPQFQQLRQVVQQNPQLLPPLLQQI 278 (378)
T ss_pred c-----c-cccCCCCCCc-chhhhhhcccccccccccccCCchHHHhhcCHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 0 0 0111112222 99999864321 11245699999999999999999999999999999986
No 2
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-60 Score=443.32 Aligned_cols=246 Identities=53% Similarity=0.801 Sum_probs=183.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||+++|++|+|+|.+++||.+||++|+...|.+ +|+++|||||+||+|+|+.+|.+|+|+++++|+||++|+|..
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~d-yP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k~~ 79 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPD-YPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDKSA 79 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCC-CchhhheeeecceeccCCcchhhhccccCceEEEEEecCccc
Confidence 8999999999999999999999999999999999988 999999999999999999999999999999999999999831
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 021760 81 SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG 160 (308)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (308)
.... ++.. .+ + ...+....+|.. ..+ .. ..+++ ...++....++
T Consensus 80 ~t~~-----ap~s--~~-----~--------~~~p~~~~ap~~-s~a-------~~----~s~~~----~~~~~~~~~~~ 123 (340)
T KOG0011|consen 80 STQV-----APQS--SA-----A--------THLPKAAEAPPS-SAA-------ED----ASPAT----PAQTSQEDTYE 123 (340)
T ss_pred ccCC-----CCCC--cc-----c--------cCCCccCCCCCc-ccc-------cc----CCCCc----cccccccchhh
Confidence 1110 0000 00 0 000011111100 000 00 00000 00122234577
Q ss_pred ccccccccCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCCCCCCCCccccCCCCCCCCCCCccc
Q 021760 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240 (308)
Q Consensus 161 ~~~s~l~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (308)
.+.++|++|++||.+|.+||+|| |+||+|+|||||||||||||||||++|||+..........+++ .
T Consensus 124 ~aas~Lv~G~~~e~~V~~Im~MG---y~re~V~~AlRAafNNPeRAVEYLl~GIP~~~~~~~~~~~~~~----------~ 190 (340)
T KOG0011|consen 124 IAASTLVVGSEYEQTVQQIMEMG---YDREEVERALRAAFNNPERAVEYLLNGIPEDAEVPEPEKSTAA----------A 190 (340)
T ss_pred hhhhhhhccchhHHHHHHHHHhC---ccHHHHHHHHHHhhCChhhhHHHHhcCCcccccCCcccCCccc----------C
Confidence 88999999999999999999999 9999999999999999999999999999998665543211100 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchHHhhChHHHHHHHHHHHhChhhHHHHHhcC
Q 021760 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQQWALIV 307 (308)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~lf~~a~~~~~~~~~~~~l~~Lr~~pqf~~lRq~vqqnP~~L~~~L~~~ 307 (308)
+ . .++ +.+|+++|++.+.... |+++|+|||++|||++||+||||||+||++|||.+
T Consensus 191 ~-~----~p~---~~~p~~~~~~~~~~~~---~~~~l~fLr~~~qf~~lR~~iqqNP~ll~~~Lqql 246 (340)
T KOG0011|consen 191 A-E----LPA---NAQPLDLFPQGAVEAS---GGDPLEFLRNQPQFQQLRQMIQQNPELLHPLLQQL 246 (340)
T ss_pred C-C----CCC---CCChhhcCCccchhhh---cCCchhhhhccHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 0 0 000 2356788988655432 44899999999999999999999999999999976
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.80 E-value=3e-19 Score=135.32 Aligned_cols=73 Identities=27% Similarity=0.403 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|+|+||+++|+++.++|++++||.+||++|+++.| +++++|+|+|+||.|+|+.+|++|||+++++|+++++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~g---i~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLN---VPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999874
No 4
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.78 E-value=1.1e-18 Score=132.56 Aligned_cols=75 Identities=55% Similarity=0.790 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCC--CCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVY--PASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~i--p~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|++|.++|++++||.+||++|+...| + ++++|||+|+|++|+|+.+|++|||++|++|++++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~---i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~~ 77 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKG---CDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKPK 77 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhC---CCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 7 999999999999999999999999999999999998874
No 5
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.77 E-value=1.5e-18 Score=133.33 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcE-EEEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTH-FEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~-~~le-V~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|++ +.|+ +++++||.+||++|++..| +++++|||+|+||+|+|+.+|++|||+++++|+++++..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~g---i~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFN---VEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhC---CCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 7895 8999999999999999999 999999999999999999999999999999999999853
No 6
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.76 E-value=2.8e-18 Score=130.35 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+||++.|+.|.++|++++||.+||++|+...| +++++|||||+||+|+|+++|++|||++|++||+..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~---~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTG---TRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999874
No 7
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.75 E-value=5.2e-18 Score=128.63 Aligned_cols=73 Identities=27% Similarity=0.369 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+. +++.++|++++||.+||.+|+...| +|+++|+|+|+||+|+|+++|++|+|+++++||++++.+.
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEG---IDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhC---CCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999974 7899999999999999999999999 9999999999999999999999999999999999998653
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.75 E-value=7.4e-18 Score=127.84 Aligned_cols=74 Identities=28% Similarity=0.446 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|+++.++|++++||.+||.+|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++||++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEG---IDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999864
No 9
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.74 E-value=1.1e-17 Score=135.25 Aligned_cols=75 Identities=33% Similarity=0.546 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||++.|+++.|+|++++||.+||++|++..| +++++|||+|+||+|+|+++|++|+|+++++|+++++.+.
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 10
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.74 E-value=9.9e-18 Score=128.66 Aligned_cols=73 Identities=23% Similarity=0.407 Sum_probs=70.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+.+|+.+.|+|+++.||.+||++|+++.| +++++|||+|+||+|+|+ +|++|||++|++|+||.+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~---~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~ 74 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLK---VPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVE 74 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhC---CChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecc
Confidence 89999999999999999999999999999999999 999999999999999999 99999999999999998753
No 11
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.73 E-value=2.4e-17 Score=124.38 Aligned_cols=74 Identities=36% Similarity=0.557 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|+++.++|+++.||.+||++|+...| +++++|||+|+|+.|+|+++|++|+|++|++|||+++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhC---CChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999864
No 12
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.72 E-value=1.4e-17 Score=128.23 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE--EeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML--IHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL--Iy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||++.|+++.++|+++.||.+||++|+...| +++++||| +|+|++|+|+++|++|||++|++|+|++++-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~---i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIG---VPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhC---CCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 78999999999999999999999999999999999 99999999 9999999999999999999999999999863
No 13
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.72 E-value=2e-17 Score=125.42 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=69.5
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+||++.|+++.|+|++++||.+||++|+...| +++++|+|+|+||+|+|+++|++|||+++++|+++++..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRER---VQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhC---CCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 689999999999999999999999999999999 999999999999999999999999999999999998864
No 14
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.72 E-value=3.7e-17 Score=123.38 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+.+|+.+.++|++++||.+||++|+...| +++++|+|+|+|+.|+|+++|++|+|++|++|+++++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhC---CCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999864
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.71 E-value=2.3e-17 Score=124.25 Aligned_cols=70 Identities=27% Similarity=0.458 Sum_probs=66.9
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
++||.++|+++.++|++++||.+||.+|++..| +++++|||+|+||+|+|+.+|++|+|+++++|||++.
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~g---i~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~~ 70 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEG---VDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIVN 70 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEeC
Confidence 468999999999999999999999999999999 9999999999999999999999999999999999873
No 16
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.71 E-value=4.7e-17 Score=121.58 Aligned_cols=72 Identities=36% Similarity=0.459 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|+|+||+++|+++.+++++++||.+||++|+...| ++++.|+|+|+|++|+|+.+|++|||++|++||++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVG---IPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999864
No 17
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.71 E-value=3.3e-17 Score=122.76 Aligned_cols=70 Identities=30% Similarity=0.546 Sum_probs=67.5
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|+||++.|+.+.++|++++||.+||++|+++.| +++++|+|+|+||.|+|+.+|++|||+++++||++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQG---VPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHC---CCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999 9999999999999999999999999999999999864
No 18
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.70 E-value=4.8e-17 Score=125.14 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=64.6
Q ss_pred CEEEEEeCCCcE--EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhc--cCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTH--FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENK--VAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~--~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dyg--Ik~g~~I~v~v 74 (308)
|.|+||+.+|++ |.+++++++||.+||++|+...+.. +++++|||||+||+|+|+.+|++|+ |+++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~-~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSK-PLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCC-CChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 579999999998 5556689999999999999987521 5689999999999999999999996 99999999986
No 19
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.70 E-value=6.7e-17 Score=121.47 Aligned_cols=71 Identities=32% Similarity=0.428 Sum_probs=67.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|+|+||+..|+ +.|+|++++||.+||++|++..| ++.++|+|+|+||+|+|+++|++|||++|++||++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~---i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFK---ANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 58999999999999999999999 9999999999999999999999999999999999875
No 20
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.69 E-value=8.8e-17 Score=119.49 Aligned_cols=69 Identities=38% Similarity=0.603 Sum_probs=66.1
Q ss_pred EeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 6 ktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+++|+.|.|+|++++||.+||++|+...| ++++.|+|+|+|++|+|+.+|++|||++|++|+++++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETG---IPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHT---STGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccc---cccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 678999999999999999999999999999 999999999999999999999999999999999998753
No 21
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.66 E-value=2.4e-16 Score=119.89 Aligned_cols=70 Identities=29% Similarity=0.414 Sum_probs=67.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe---CCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy---~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+|| ++|++|.|+|++++||.+||++|++.+| +|+++|||+| +||+|+|+.+|++|+|++|++|+||.
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tg---vp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTG---VLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHC---CCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 689999 7999999999999999999999999999 9999999997 99999999999999999999999985
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.64 E-value=4.9e-16 Score=117.09 Aligned_cols=68 Identities=34% Similarity=0.435 Sum_probs=64.4
Q ss_pred EEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCC-CChhhhccCCCCEEEEE
Q 021760 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVM 73 (308)
Q Consensus 3 I~Vktl-~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~-~tL~dygIk~g~~I~v~ 73 (308)
|+||+. .|+++.|+|++++||.+||.+|+...| +|+++|||+|+||.|+|+ .+|++|||++|++||+.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~g---ip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESG---IPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhC---CCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 689999 999999999999999999999999999 999999999999999987 68999999999999873
No 23
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.62 E-value=1.5e-15 Score=113.27 Aligned_cols=70 Identities=29% Similarity=0.421 Sum_probs=66.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+||+. |+.+.++|++++||.+||++|+..+| +++++|||+|+|+.|+|+++|++|||++|++|+||.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTG---VEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhC---CChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999986 89999999999999999999999999 999999999999999999999999999999999974
No 24
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.61 E-value=2.5e-15 Score=114.62 Aligned_cols=68 Identities=26% Similarity=0.396 Sum_probs=65.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
++|+++.|+|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|++|++|+|+++.+.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETG---MPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 5799999999999999999999999999 9999999999999999999999999999999999998654
No 25
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.2e-16 Score=110.51 Aligned_cols=70 Identities=36% Similarity=0.548 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
|.|.||+++|+.+.|+++++++|..+|++|+++.| ||+.+|||||.||.+.|+++-++|++.-|++||++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeG---IPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcC---CCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999974
No 26
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=142.84 Aligned_cols=77 Identities=29% Similarity=0.441 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
++|+||+.++ ++.|.|..+.||++||++|...++ +++++++|||+||||+|++||..|||++|.+||||++....+
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~---a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~ 91 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFG---APPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRP 91 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcC---CChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCC
Confidence 5799999888 899999999999999999999998 999999999999999999999999999999999998765544
Q ss_pred C
Q 021760 81 S 81 (308)
Q Consensus 81 ~ 81 (308)
.
T Consensus 92 ~ 92 (493)
T KOG0010|consen 92 T 92 (493)
T ss_pred C
Confidence 3
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.53 E-value=6.2e-14 Score=109.73 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|.|+|++.+|+.+.++|.++++|..||++++++.| +++++|||+|+|+.|+|+.|+.+|+|+++++|+++++...
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~g---i~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQG---LSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhC---CCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence 67999999999999999999999999999999999 9999999999999999999999999999999999988653
No 28
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.52 E-value=4.9e-14 Score=102.13 Aligned_cols=64 Identities=42% Similarity=0.649 Sum_probs=61.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENS 68 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~ 68 (308)
|+|+||+.+ +.+.++|+++.||.+||.+|+..+| +++++|+|+|+|+.|+|+++|++|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~---~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTG---IPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7899999999999999999999999 999999999999999999999999999875
No 29
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.8e-15 Score=119.77 Aligned_cols=76 Identities=37% Similarity=0.583 Sum_probs=73.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|.++++++.|+++.++|++++||..||.+|....| +|++.|+|||+||+|+|..||++|||...++||++.+.+..
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~G---i~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccC---CCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999887764
No 30
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.46 E-value=7e-14 Score=106.40 Aligned_cols=55 Identities=25% Similarity=0.237 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCC-CCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 19 PEDKVSDVKKNIETVQGSDVY-PASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 19 ~~~TV~~LK~~I~~~~g~~~i-p~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
.++||.+||++|+++.+.. + ++++|||||+||+|+|+++|++|||++|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~eg-i~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDS-LPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccC-CCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4579999999999996322 5 58999999999999999999999999999999985
No 31
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=5.2e-14 Score=119.64 Aligned_cols=77 Identities=35% Similarity=0.553 Sum_probs=73.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+|+++.++++.++|+.++||..+|.+|++..| ||+++|||||.|+.|+|..+|+||+|+..++|+++++.+...
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~eg---Ip~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccC---CCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999976544
No 32
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.40 E-value=6.4e-13 Score=107.93 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=64.3
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhCC--CCCC--CCCeEEEeCCEecCCCCChhhhc------cCCCCE
Q 021760 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGS--DVYP--ASQQMLIHQGKVLKDVTTLEENK------VAENSF 69 (308)
Q Consensus 1 M~I~Vktl~gk~~-~leV~~~~TV~~LK~~I~~~~g~--~~ip--~~~qkLIy~GKiL~D~~tL~dyg------Ik~g~~ 69 (308)
+.|.||..+|..+ ...+++++||.+||++|+..++. ..+| +++|||||+||+|+|++||++|+ +....+
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 3578888888654 46778999999999999977742 1244 89999999999999999999999 777789
Q ss_pred EEEEEecCC
Q 021760 70 VVVMLTKSK 78 (308)
Q Consensus 70 I~v~v~k~k 78 (308)
+||+++.+.
T Consensus 85 mHvvlr~~~ 93 (113)
T cd01814 85 MHVVVQPPL 93 (113)
T ss_pred EEEEecCCC
Confidence 999987643
No 33
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.39 E-value=1.6e-12 Score=95.39 Aligned_cols=68 Identities=43% Similarity=0.663 Sum_probs=64.3
Q ss_pred EEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 4 ~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
+||..+|+.+.++++++.||.+||++|+..+| +++++|+|+|+|+.|+|+.+|.+|+|++++.|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~---~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEG---VPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 37778899999999999999999999999999 999999999999999999999999999999999875
No 34
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.36 E-value=2.1e-12 Score=98.53 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=59.0
Q ss_pred EeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecC-CCCChhhhccC-CCCEEEEEE
Q 021760 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLK-DVTTLEENKVA-ENSFVVVML 74 (308)
Q Consensus 6 ktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~-D~~tL~dygIk-~g~~I~v~v 74 (308)
|...|.++.|+|++++||.+||.+|+.+.| +|++.||| |+|+.|. |+++|++|||+ +|+++++.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~g---ip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYG---FPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 344678999999999999999999999999 99999999 9999985 67999999999 889999875
No 35
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.32 E-value=7.3e-12 Score=93.86 Aligned_cols=71 Identities=24% Similarity=0.391 Sum_probs=65.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~-~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+|+..+|+.+.+.|.++++|..|++++++..| ++. +.++|+|+|+.|++++|+++|||++|++|+|++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~---i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKG---IPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHT---TTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhC---CCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999 889 999999999999999999999999999999875
No 36
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.12 E-value=1.7e-10 Score=91.70 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=57.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCC-CCChhhhccCCCCEEEEEEecC
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D-~~tL~dygIk~g~~I~v~v~k~ 77 (308)
...++|++++||.+||.+|...++ +++.+|||+|+|+.|.| .+||++|||..++.|++.+..+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~---V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFS---VAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhc---CCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 467889999999999999999999 99999999999999965 5799999999999999987643
No 37
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=99.12 E-value=1.1e-10 Score=77.07 Aligned_cols=36 Identities=50% Similarity=0.723 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHH
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL 210 (308)
.++.|++|++|| |+|++|++||+++.||.|+||+||
T Consensus 2 ~~~~v~~L~~mG---f~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMG---FSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHT---S-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHhC
Confidence 478999999999 999999999999999999999998
No 38
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=99.06 E-value=7.6e-11 Score=85.89 Aligned_cols=31 Identities=52% Similarity=0.789 Sum_probs=28.5
Q ss_pred hHHhhChHHHHHHHHHHHhChhhHHHHHhcC
Q 021760 277 LDFLRNSQQFQALRTMVQANPQILQQWALIV 307 (308)
Q Consensus 277 l~~Lr~~pqf~~lRq~vqqnP~~L~~~L~~~ 307 (308)
|+|||++|+|++||++||+||++|++|||++
T Consensus 1 L~~Lr~~Pqf~~lR~~vq~NP~lL~~lLqql 31 (59)
T PF09280_consen 1 LEFLRNNPQFQQLRQLVQQNPQLLPPLLQQL 31 (59)
T ss_dssp CGGGTTSHHHHHHHHHHHC-GGGHHHHHHHH
T ss_pred ChHHHcChHHHHHHHHHHHCHHHHHHHHHHH
Confidence 6899999999999999999999999999975
No 39
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.04 E-value=1.8e-09 Score=88.35 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=56.1
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCC----CCCCCCeEEEeCCEecCCCCChhhhccCCCC------E
Q 021760 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSD----VYPASQQMLIHQGKVLKDVTTLEENKVAENS------F 69 (308)
Q Consensus 1 M~I~Vktl~gk-~~~leV~~~~TV~~LK~~I~~~~g~~----~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~------~ 69 (308)
+.|+|+..+|+ +..+.+++++||.+||+.|...+..+ ...++.+||||.||+|+|+++|++|++..++ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 35778888998 77889999999999999999877533 1234578999999999999999999998777 4
Q ss_pred EEEEEec
Q 021760 70 VVVMLTK 76 (308)
Q Consensus 70 I~v~v~k 76 (308)
+||+++.
T Consensus 83 mHlvvrp 89 (111)
T PF13881_consen 83 MHLVVRP 89 (111)
T ss_dssp EEEEE-S
T ss_pred EEEEecC
Confidence 5555543
No 40
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.01 E-value=1.8e-09 Score=83.99 Aligned_cols=71 Identities=25% Similarity=0.321 Sum_probs=59.5
Q ss_pred EEEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCCE-----ec-CCCCChhhhccCCCCEEEEE
Q 021760 2 KVFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQGK-----VL-KDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 2 ~I~Vktl-~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL-Iy~GK-----iL-~D~~tL~dygIk~g~~I~v~ 73 (308)
+|.|+.. ....++..+++++||.+||++|+..+| +++..||| +|.|+ .| +|+++|++||+++|..|||+
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G---~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVG---TPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHC---CCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 5666653 334455669999999999999999999 99999999 58888 45 77889999999999999998
Q ss_pred Ee
Q 021760 74 LT 75 (308)
Q Consensus 74 v~ 75 (308)
-.
T Consensus 80 D~ 81 (84)
T cd01789 80 DV 81 (84)
T ss_pred eC
Confidence 64
No 41
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.1e-10 Score=117.34 Aligned_cols=70 Identities=26% Similarity=0.400 Sum_probs=67.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
.|+||+++.++.++.|+..+||++||+.|..+.+ |+.+.|||||.|++|.|++++++|+| +|.+|||+-|
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~n---i~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVN---IPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcc---cccccceeeecceeeccchhhhhccC-CCeEEEeecc
Confidence 4899999999999999999999999999999999 99999999999999999999999999 8999999987
No 42
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.98 E-value=5e-09 Score=76.25 Aligned_cols=72 Identities=39% Similarity=0.585 Sum_probs=68.1
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
++++++.|+.+.+++....+|..+|.+|....| ++.+.|+|+|.|+.|.|+.+|.+|+|..+++++++.+.+
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~---~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEG---IPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcC---CCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 577889999999999999999999999999999 999999999999999999999999999999999988764
No 43
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.90 E-value=2.6e-09 Score=70.53 Aligned_cols=38 Identities=50% Similarity=0.733 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
+++.|++|++|| |+|++|++||+++.||.++|++||+.
T Consensus 1 ~~~~v~~L~~mG---f~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 1 DEEKLEQLLEMG---FSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 357899999999 99999999999999999999999973
No 44
>PLN02560 enoyl-CoA reductase
Probab=98.89 E-value=5e-09 Score=99.93 Aligned_cols=70 Identities=33% Similarity=0.440 Sum_probs=62.1
Q ss_pred CEEEEEeCCCcEE---EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC---C----EecCCCCChhhhccCCCCEE
Q 021760 1 MKVFVKTLKGTHF---EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ---G----KVLKDVTTLEENKVAENSFV 70 (308)
Q Consensus 1 M~I~Vktl~gk~~---~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~---G----KiL~D~~tL~dygIk~g~~I 70 (308)
|+|+|+..+|+.+ .|+++++.||++||++|++..+. +++++|||+|. | +.|+|+++|++||+++|++|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~--~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstL 78 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKK--YYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTV 78 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCC--CChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceE
Confidence 8999998888887 79999999999999999999872 37899999972 3 48899999999999999988
Q ss_pred EE
Q 021760 71 VV 72 (308)
Q Consensus 71 ~v 72 (308)
++
T Consensus 79 y~ 80 (308)
T PLN02560 79 VF 80 (308)
T ss_pred EE
Confidence 76
No 45
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.87 E-value=7.3e-09 Score=84.21 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=62.6
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhcc-------CCCCEEEE
Q 021760 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-------AENSFVVV 72 (308)
Q Consensus 1 M~I~Vktl~gk-~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygI-------k~g~~I~v 72 (308)
|-++++....| ++.+++.++.||.+||++|+.... .|++.|||+..+.+|+|++||++||+ +...+|-+
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k---~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgL 77 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILK---RPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGL 77 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhc---CChhHheeecCceeecccccHHHcCccccccccCCCCeEEE
Confidence 56666655544 677899999999999999999998 99999999988899999999999999 55777777
Q ss_pred EEec
Q 021760 73 MLTK 76 (308)
Q Consensus 73 ~v~k 76 (308)
.+|+
T Consensus 78 a~r~ 81 (119)
T cd01788 78 AFRS 81 (119)
T ss_pred EEec
Confidence 7774
No 46
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.86 E-value=3.3e-09 Score=69.72 Aligned_cols=37 Identities=51% Similarity=0.791 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
+++.|++|++|| |++++|.+||+...||.++|++||+
T Consensus 1 ~~~~v~~L~~mG---f~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 1 DEEKIDQLLEMG---FSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 367899999999 9999999999999999999999995
No 47
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.83 E-value=1.3e-08 Score=79.36 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=57.8
Q ss_pred EEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC----C---Eec-CCCCChhhhccCCCCEEE
Q 021760 2 KVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----G---KVL-KDVTTLEENKVAENSFVV 71 (308)
Q Consensus 2 ~I~Vktl~g--k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~----G---KiL-~D~~tL~dygIk~g~~I~ 71 (308)
+|+|..... +.++..++.++||.+||.+|+..+| ++++.|+|.|. + ..| +|+++|.+||+++|+.||
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~G---i~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~ 79 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTG---IPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIH 79 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHT---S-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhC---CCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEE
Confidence 566765544 5889999999999999999999999 99999999765 2 224 567899999999999999
Q ss_pred EEEecC
Q 021760 72 VMLTKS 77 (308)
Q Consensus 72 v~v~k~ 77 (308)
|.-..+
T Consensus 80 V~D~~p 85 (87)
T PF14560_consen 80 VVDTNP 85 (87)
T ss_dssp EEE-T-
T ss_pred EEeCCC
Confidence 986543
No 48
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.78 E-value=1.9e-08 Score=76.84 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=54.5
Q ss_pred EEEEEeCC-CcEEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCeEE--EeCCEecCCCCChhhhccCCCCEEEE
Q 021760 2 KVFVKTLK-GTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQML--IHQGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vktl~-gk~~~leV~-~~~TV~~LK~~I~~~~g~~~ip~~~qkL--Iy~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
.|.++... .....++++ ++.||.+||+.|+...+. +++++||| ++.|++|.|+.+|.+|||++|++|+|
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~--~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQ--LTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCC--CCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 56666555 333335554 788999999999988652 57899888 58999999999999999999999876
No 49
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.58 E-value=3.3e-07 Score=63.01 Aligned_cols=67 Identities=31% Similarity=0.457 Sum_probs=60.7
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 5 Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+..++..+.+.+....||.+||++|..+.| ++++.++|+++|+.+++...+.+|++.+++.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLG---LPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHC---cChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444688889999999999999999999999 889999999999999999999999999999999864
No 50
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.57 E-value=9.9e-08 Score=73.73 Aligned_cols=69 Identities=28% Similarity=0.359 Sum_probs=44.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC---CEec--CCCCChhhhccCCCCEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ---GKVL--KDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~---GKiL--~D~~tL~dygIk~g~~I~v~ 73 (308)
|-|.|++.+| .+.|++++++|+.+||++|.+..+ ++.+.+.|..+ .+.| .++++|+++||+.||.|+|.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~---~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLS---IPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcC---CCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 6788998777 788999999999999999999999 88888888532 1334 56889999999999999873
No 51
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.38 E-value=2.3e-06 Score=64.68 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=62.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--EecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~---G--KiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
++|+|+-+.+..+.+.|+|..+|.+||++|....| ++ ..|||.|. | ..|.+.++|.+|||-.+-.|.|+-.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~---~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRN---CS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhC---cc-cceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 58999999999999999999999999999999998 54 59999983 3 4579999999999998888877754
Q ss_pred c
Q 021760 76 K 76 (308)
Q Consensus 76 k 76 (308)
-
T Consensus 77 ~ 77 (80)
T cd01811 77 F 77 (80)
T ss_pred C
Confidence 3
No 52
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=9.9e-07 Score=83.23 Aligned_cols=72 Identities=28% Similarity=0.391 Sum_probs=63.2
Q ss_pred CEEEEEeC---CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTL---KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl---~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|.|.|+.. ....+.|+|+.+..|.+||+.++...| +|+++.|+||.||.|.|+.++..+.+...+.+|+|.-
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~g---vp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~l 75 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQG---VPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLL 75 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhC---CChhheEEEEeccccccCceeecccccccchhhhhcc
Confidence 66777654 224588999999999999999999999 9999999999999999999999999988899998843
No 53
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4.7e-06 Score=82.37 Aligned_cols=71 Identities=23% Similarity=0.372 Sum_probs=66.0
Q ss_pred EEEEeCCCcEEEEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 3 VFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 3 I~Vktl~gk~~~le-V~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|.|| +.|+.|.++ ++.++|+..||.+|...+| +++++||++++|+.|.|+-.+..++||+|.+|++|.+.-
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTg---V~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTG---VPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcC---CCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 5666 899999988 9999999999999999999 999999999999999999999999999999999998653
No 54
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.3e-05 Score=62.48 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=64.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
+|.|+..++..+.+.|..+.....|++..++..| +....+|++|+|+.+.+.+|-.++++++||.|.++...
T Consensus 22 ~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~G---l~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 22 NLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQG---LSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred EEEEecCCCCEEEEEeecCChHHHHHHHHHHHcC---CccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 4566665667778999999999999999999999 88999999999999999999999999999999998654
No 55
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.9e-06 Score=63.33 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=60.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
.+.+...-|++..|.+.+++||+++|+.|+.+.| ..++.+.|---+.+++|.-+|++|.|++|..+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtG---T~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhC---CChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 4667777899999999999999999999999999 77888888766678899999999999999887765
No 56
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.77 E-value=6.8e-05 Score=60.04 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=47.3
Q ss_pred EEEEEeCCC-cEEEEEeC--CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhc
Q 021760 2 KVFVKTLKG-THFEIEVK--PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENK 63 (308)
Q Consensus 2 ~I~Vktl~g-k~~~leV~--~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dyg 63 (308)
.|+||..++ ..+.|+|. .+.||..||++|.+..+.+ ..-.++||||+||+|.|+..|...-
T Consensus 2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~-~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPE-PSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCC-CccccEEeeecCcccCccchhhhhh
Confidence 366665552 34677777 7789999999999998533 5667899999999999998877653
No 57
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.76 E-value=3.7e-05 Score=60.85 Aligned_cols=62 Identities=24% Similarity=0.379 Sum_probs=50.5
Q ss_pred CEEEEEeCC-CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CC-EecCCCCChhhhccC
Q 021760 1 MKVFVKTLK-GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QG-KVLKDVTTLEENKVA 65 (308)
Q Consensus 1 M~I~Vktl~-gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy-~G-KiL~D~~tL~dygIk 65 (308)
|.++++... ..++.++.+++.||.+||.+++.... -|++.|||+. .- .+|+|.++|++||..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~---~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILK---RPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHh---CCCcchheeecCHHHHhhccchhhhcccc
Confidence 345554433 34678899999999999999999998 8999999976 33 678999999999874
No 58
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.50 E-value=0.00021 Score=54.71 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=50.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC---CeEEE-eCCEecCCCCChhhhccCCCCEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS---QQMLI-HQGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~---~qkLI-y~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
+|+|...+|+.+.+.+..+.+|.+|...|.+..+....... ..+|. -+|..|+++++|.++||.+|+.|++
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 56777545689999999999999999999988773212222 35676 7899999999999999999999987
No 59
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=97.45 E-value=0.00023 Score=48.04 Aligned_cols=39 Identities=33% Similarity=0.401 Sum_probs=35.3
Q ss_pred HHHHHHHHHHh--cCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 172 ~e~~v~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
++++|+.|.+| . |+++.++++|++.-+|.|+||++|+.|
T Consensus 1 ~~~~v~~L~~mFP~---~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 1 REEMVQQLQEMFPD---LDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp CHHHHHHHHHHSSS---S-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 47899999999 7 999999999999999999999999975
No 60
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.27 E-value=0.0011 Score=50.19 Aligned_cols=68 Identities=7% Similarity=0.185 Sum_probs=56.7
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCC--CCCCCeEEEeCCEecCCCCChhhhccCCCCEEEE
Q 021760 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV--YPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 5 Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~--ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
++.+.|++|.+.+....+|+.|-..+.+....+- ..-..+|+.-++++|.++..|.+|+|.+||.+.+
T Consensus 11 ~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 11 FTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 4678899999999999999999998887765321 1224578899999999999999999999999875
No 61
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.25 E-value=0.0021 Score=49.02 Aligned_cols=68 Identities=22% Similarity=0.299 Sum_probs=57.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEE--eCCEecCCC--CChhhhccCCCCEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLI--HQGKVLKDV--TTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~-qkLI--y~GKiL~D~--~tL~dygIk~g~~I~v 72 (308)
+|.||..+|+.+...+..++||.+|...|..... .+... .+|+ |-.+.|.++ ++|+++|+..+.+|+|
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~---~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLF---SPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHH---CTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcC---CCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 6889999999999999999999999999988876 33443 7776 677888544 6999999999988876
No 62
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.20 E-value=0.0027 Score=48.56 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=55.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecCC---CCChhhhccCCCCEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD---VTTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~D---~~tL~dygIk~g~~I~v 72 (308)
+|.||..+|+.+...+..++||.+|.+.|....+ ......+|+ |-.|.|.+ +++|.++|+..+.+|+|
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~---~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT---DGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc---CCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 6889999999999999999999999999966555 445567775 67788854 47999999988877765
No 63
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0014 Score=51.46 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=60.3
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|.|...+|..+.+.|..+.+...|.+..+...| -..+..|++|+|+.++-++|-.++++.+++.|.++.
T Consensus 27 Lkvv~qd~telfFkiKktT~f~klm~af~~rqG---K~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 27 LKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQG---KNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred eEEecCCCCEEEEEEeccchHHHHHHHHHHHhC---cCcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence 455556778888999999999999999999999 447899999999999999999999999999876543
No 64
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00025 Score=73.03 Aligned_cols=43 Identities=40% Similarity=0.652 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
+.-|+.|..|++|| |.|.|++.||++..||.+|||||+++-+=
T Consensus 633 ~~~e~~v~si~smG---f~~~qa~~aL~~~n~nveravDWif~h~d 675 (763)
T KOG0944|consen 633 EVDEESVASIVSMG---FSRNQAIKALKATNNNVERAVDWIFSHMD 675 (763)
T ss_pred CCChhHheeeeeec---CcHHHHHHHHHhcCccHHHHHHHHHhccc
Confidence 45688999999999 99999999999999999999999999854
No 65
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.10 E-value=0.0045 Score=46.92 Aligned_cols=67 Identities=27% Similarity=0.339 Sum_probs=53.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecCC---CCChhhhccCCCCEEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD---VTTLEENKVAENSFVVVM 73 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~D---~~tL~dygIk~g~~I~v~ 73 (308)
+|.||..+|+.+...+..++||.+|.+-|..... . ....+|+ |-.|.|.| +.+|+++|+. .+.+++.
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~---~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGP---P-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCC---C-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 6889999999999999999999999999987654 2 4556776 56788854 7899999999 4555543
No 66
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.01 E-value=0.0033 Score=46.71 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=46.8
Q ss_pred eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEE
Q 021760 7 TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 7 tl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
..+++.+.|.|.++.++.++-+....++| +..++-.|.|++|.|+-+.++.-.|+-+|..+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~---l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFG---LDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT-----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcC---CCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 36789999999999999999999999999 8889999999999999999999999999998764
No 67
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.92 E-value=0.007 Score=46.52 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=53.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecCC-CCChhhhccCCCCEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENSFVV 71 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~D-~~tL~dygIk~g~~I~ 71 (308)
+|.||..+|+.+...+..++||.+|.+.|....+. .......|+ |-.|.|.| +.||+|.|+.+ +.|+
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~--~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~-s~v~ 75 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPE--FAARPFTLMTAFPVKELSDESLTLKEANLLN-AVIV 75 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCC--CCCCCEEEecCCCCcccCCCCCcHHHCCCcC-cEEE
Confidence 68899999999999999999999999999987641 123456775 67888854 78999999986 4443
No 68
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.91 E-value=0.0022 Score=59.22 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=53.1
Q ss_pred CEEEEEeCCCc-EEE-EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE----EeCCEecCCCCChhhhccCCCCEEEE
Q 021760 1 MKVFVKTLKGT-HFE-IEVKPEDKVSDVKKNIETVQGSDVYPASQQML----IHQGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 1 M~I~Vktl~gk-~~~-leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL----Iy~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
|+|++...++. ..+ .+++...||.|+++.|..+..+ +-+.++|+ --+||.|.|+.+|++|+..+|.+|+|
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k--~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLK--ITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhc--cCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 78999877652 333 5677889999999888665542 55545544 35899999999999999999987776
No 69
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.0018 Score=58.34 Aligned_cols=61 Identities=26% Similarity=0.380 Sum_probs=53.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEE
Q 021760 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 9 ~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
.++.|.+.+...+||.++|.+++...| +.+-.|+++|+|++|.|...|.+|+|..|...+|
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg---~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEG---VDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhc---cchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 466788888889999999999999999 6688999999999999999999999999954433
No 70
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.87 E-value=0.009 Score=45.75 Aligned_cols=67 Identities=19% Similarity=0.358 Sum_probs=55.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecCC---CCChhhhccCCCCEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD---VTTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~D---~~tL~dygIk~g~~I~v 72 (308)
+|.||..+|+.+...+..++||.+|++-|....+ . ....+|+ |-.|.+.+ ++||.++|+....+|+|
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~---~-~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG---N-GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC---C-CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 6889999999999999999999999999986654 2 2556776 77898854 47999999998877765
No 71
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00027 Score=67.45 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=56.0
Q ss_pred EEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCC--CCEEEEEEecC
Q 021760 2 KVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE--NSFVVVMLTKS 77 (308)
Q Consensus 2 ~I~Vktl~g--k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~--g~~I~v~v~k~ 77 (308)
.++||..+. +...|..+.+.||++||..++...-.+ --..+|||||.||.|.|...|.|+-+|. ..++||++..+
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPsk-pl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcnsk 89 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSK-PLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNSK 89 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCC-CchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 356665554 456677888899999999999887643 2346899999999999999999986654 34556665444
Q ss_pred C
Q 021760 78 K 78 (308)
Q Consensus 78 k 78 (308)
.
T Consensus 90 ~ 90 (391)
T KOG4583|consen 90 E 90 (391)
T ss_pred C
Confidence 3
No 72
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0022 Score=56.77 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=44.0
Q ss_pred cccccCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 164 s~l~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
..+..+..+...|.+|.+|| |+|+.++.+|+-...|-.+|-|+|++|
T Consensus 154 ~~~~~~~~~~~~v~~l~~mG---f~~~~~i~~L~~~~w~~~~a~~~~~s~ 200 (200)
T KOG0418|consen 154 GRLPDDPWDKKKVDSLIEMG---FSELEAILVLSGSDWNLADATEQLLSG 200 (200)
T ss_pred CCCCCCchhHHHHHHHHHhc---ccHHHHHHHhhccccchhhhhHhhccC
Confidence 33778899999999999999 999999999999999999999999987
No 73
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.61 E-value=0.0024 Score=62.78 Aligned_cols=38 Identities=34% Similarity=0.507 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
-.++|++|++|| |+|+.|+.|-.|+-.|=+.|+.||+.
T Consensus 337 E~~AIeRL~~LG---F~r~~viqaY~ACdKNEelAAn~Lf~ 374 (378)
T TIGR00601 337 EKEAIERLCALG---FDRGLVIQAYFACDKNEELAANYLLS 374 (378)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 357899999999 99999999999999999999999985
No 74
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=96.52 E-value=0.0073 Score=40.78 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=36.0
Q ss_pred HHHHHHHHHHh--cCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 172 ~e~~v~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
.++.|..|.+| . ++++.|++.|++.-||.|+|++.|+.|
T Consensus 2 ~~~~v~~L~~mFP~---l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 2 NDEALHDLKDMFPN---LDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 46789999999 6 899999999999999999999999976
No 75
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.48 E-value=0.026 Score=43.82 Aligned_cols=69 Identities=19% Similarity=0.338 Sum_probs=58.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecC---CCCChhhhccCCCCEEEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK---DVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~---D~~tL~dygIk~g~~I~v~v 74 (308)
+|.||..+|+.+.-.+..++++.+|...|.. .| .+.+..+|+ |--|.|. .+.||++.|+....+|+|--
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g---~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KG---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cC---CCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 6899999999999999999999999999988 56 677888887 6677773 35799999999999888743
No 76
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.40 E-value=0.025 Score=49.27 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=54.4
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe-EEEe-CCEec--CCCCChhhhccCCCC----
Q 021760 1 MKVFVKTLKG----THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIH-QGKVL--KDVTTLEENKVAENS---- 68 (308)
Q Consensus 1 M~I~Vktl~g----k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~q-kLIy-~GKiL--~D~~tL~dygIk~g~---- 68 (308)
|.|+|++++| .++.+.+..+.||.+|+..|....+ ++...+ .|.+ .++.| .++..+.++.-.+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~---~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~ 77 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP---IPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFI 77 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC---CCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCce
Confidence 7899999999 5889999999999999999999998 776663 4544 34444 566677777654443
Q ss_pred EEEEEEecCC
Q 021760 69 FVVVMLTKSK 78 (308)
Q Consensus 69 ~I~v~v~k~k 78 (308)
+|+|+++...
T Consensus 78 ~l~l~~rl~G 87 (162)
T PF13019_consen 78 TLRLSLRLRG 87 (162)
T ss_pred EEEEEEeccC
Confidence 4455555443
No 77
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.34 E-value=0.031 Score=43.59 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=55.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC--EecC--------CCCChhhhccCCCCEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG--KVLK--------DVTTLEENKVAENSFV 70 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G--KiL~--------D~~tL~dygIk~g~~I 70 (308)
.+|.||..+|+.+.-.+..++||.+|..-|.. .+ ..++...|+++= |+|. .+.||++.||....+|
T Consensus 5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~---~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LK---ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CC---CCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 36889999999999999999999999999964 34 446788888543 7885 3679999999987777
Q ss_pred EE
Q 021760 71 VV 72 (308)
Q Consensus 71 ~v 72 (308)
+|
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 65
No 78
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.012 Score=53.04 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=55.3
Q ss_pred EEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCC-----Eec-CCCCChhhhccCCCCEEEEE
Q 021760 2 KVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQG-----KVL-KDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 2 ~I~Vktl~gk-~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL-Iy~G-----KiL-~D~~tL~dygIk~g~~I~v~ 73 (308)
+|+|.+...+ .++.++..+.||.+||.+++..+| .+++.++| +|.| -.| +++..|..|+..+|..||++
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G---~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTG---TEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhC---CCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 4566543322 345667889999999999999999 88999998 5766 235 55779999999999999997
Q ss_pred Ee
Q 021760 74 LT 75 (308)
Q Consensus 74 v~ 75 (308)
-.
T Consensus 80 D~ 81 (234)
T KOG3206|consen 80 DS 81 (234)
T ss_pred ec
Confidence 53
No 79
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.85 E-value=0.075 Score=40.92 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=56.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecC---CCCChhhhccCCCCEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK---DVTTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~---D~~tL~dygIk~g~~I~v 72 (308)
+|.||..+|+.+.-.+..++++.+|..-|..+ | ++.+..+|+ |--|.+. .+.+|.+.|+....+|+|
T Consensus 6 ~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~---~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 6 KLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-G---YPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-C---CCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 68899999999999999999999999999764 6 667788886 6678774 357999999998888776
No 80
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.19 E-value=0.033 Score=42.50 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=45.8
Q ss_pred eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhh-ccCCCCEEEEEE
Q 021760 17 VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN-KVAENSFVVVML 74 (308)
Q Consensus 17 V~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dy-gIk~g~~I~v~v 74 (308)
|.++++|.+||+.|...... .......|.|+|+.|+|...|+++ |+++|..|.++.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t--~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPET--CYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccc--cceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 56789999999999876541 445677899999999999999988 588899888873
No 81
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=95.05 E-value=0.029 Score=53.82 Aligned_cols=39 Identities=31% Similarity=0.432 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
-.++|.+|..|| |+|.-|+.|--|+..|=+-|.+||+..
T Consensus 298 e~eAIeRL~alG---F~ralViqayfACdKNEelAAN~Ll~~ 336 (340)
T KOG0011|consen 298 EKEAIERLEALG---FPRALVIQAYFACDKNEELAANYLLSH 336 (340)
T ss_pred HHHHHHHHHHhC---CcHHHHHHHHHhcCccHHHHHHHHHhh
Confidence 357899999999 999999999999999999999999964
No 82
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=94.96 E-value=0.029 Score=40.27 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHH
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRA 198 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrA 198 (308)
...|+++++|| |+|+.|+.+||-
T Consensus 10 ~~lVd~F~~mG---F~~dkVvevlrr 32 (55)
T PF09288_consen 10 KDLVDQFENMG---FERDKVVEVLRR 32 (55)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHH
T ss_pred HHHHHHHHHcC---CcHHHHHHHHHH
Confidence 57899999999 999999999994
No 83
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=94.82 E-value=0.057 Score=42.11 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=31.4
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 176 v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
|+.+.+.| |.++.|.+||++.-.++..|..|++++
T Consensus 1 i~~~~~~g---~~~~~v~~aL~~tSgd~~~a~~~vl~~ 35 (87)
T PF11626_consen 1 IKHYEELG---YSREFVTHALYATSGDPELARRFVLNF 35 (87)
T ss_dssp -HHHHHHT---B-HHHHHHHHHHTTTBHHHHHHHHHHC
T ss_pred CchHHHhC---CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56788999 999999999999999999999999988
No 84
>PRK06437 hypothetical protein; Provisional
Probab=94.71 E-value=0.23 Score=36.86 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=45.2
Q ss_pred EEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 4 ~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
.|+--.++...++++...||.+|-+. .| ++.+...+..+|+++. .++-|++||.|.++.
T Consensus 4 ~~~v~g~~~~~~~i~~~~tv~dLL~~----Lg---i~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 4 MIRVKGHINKTIEIDHELTVNDIIKD----LG---LDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred eEEecCCcceEEEcCCCCcHHHHHHH----cC---CCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 34433456677888888899988765 46 7788889999999997 566788999998863
No 85
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.41 E-value=0.25 Score=37.05 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=50.7
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe----CC--EecCCCCChhhhccCCCCEEEEEE
Q 021760 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH----QG--KVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 5 Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy----~G--KiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+.++|....++|+.+.|+.+|-++|+...|. ...+..-|.| +| .-|+.+++|.++..+.+....+..
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l--~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~f 74 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGL--KEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYF 74 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTT--SSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCC--CCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEE
Confidence 56789999999999999999999999999992 2344567777 33 447889999999877333333333
No 86
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.17 E-value=0.24 Score=37.09 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=41.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCC-CCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGS-DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~-~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
...++++...||.+|.+.+...++. .........+..+|+... .++-|++||.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEe
Confidence 4667887789999999999887541 001234567778999987 34568999999987
No 87
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.13 E-value=0.069 Score=53.73 Aligned_cols=42 Identities=36% Similarity=0.522 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHHHhcCCcc-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
-..|..-.+++-+|| | +|+.-++||||.+.+.++|||-|+.+
T Consensus 451 e~r~q~QLeQL~~MG---F~nre~nlqAL~atgGdi~aAverll~s 493 (493)
T KOG0010|consen 451 EERYQTQLEQLNDMG---FLDREANLQALRATGGDINAAVERLLGS 493 (493)
T ss_pred hHHHHHHHHHHHhcC---CccHHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 456778899999999 9 99999999999999999999999853
No 88
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=94.03 E-value=0.077 Score=51.54 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=59.8
Q ss_pred CEEEEEeC--CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCC--CChhhhccCCCCEEEE
Q 021760 1 MKVFVKTL--KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV--TTLEENKVAENSFVVV 72 (308)
Q Consensus 1 M~I~Vktl--~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~--~tL~dygIk~g~~I~v 72 (308)
|.++|.+. ..++|.++|..+.....|+..+....| +..+..-|||+++.|.++ ..|..||++++++|.+
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g---~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~l 73 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTG---IVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLAL 73 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhC---cccchhhcccCCCccccchhhhhhhcccccceeEec
Confidence 66777654 667889999999999999999999999 889999999999999654 6899999999988755
No 89
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=93.83 E-value=0.25 Score=37.57 Aligned_cols=66 Identities=11% Similarity=0.166 Sum_probs=45.3
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeCCEecCCCCChhhhccCCCCEEE
Q 021760 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVV 71 (308)
Q Consensus 1 M~I~Vktl~------g-k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~--~~qkLIy~GKiL~D~~tL~dygIk~g~~I~ 71 (308)
|+|+|+.+. | ....+++....||.+|++.|...... +.. ....+..+|+...+ ++-|++||.|.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~--l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVa 74 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPS--LEEVRSCCVLALNEEYTTE-----SAALKDGDELA 74 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChh--HHHHhhCcEEEECCEEcCC-----CcCcCCCCEEE
Confidence 678887542 4 45677888889999999999766420 111 22346678888753 34578899998
Q ss_pred EE
Q 021760 72 VM 73 (308)
Q Consensus 72 v~ 73 (308)
++
T Consensus 75 i~ 76 (82)
T PLN02799 75 II 76 (82)
T ss_pred Ee
Confidence 86
No 90
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=93.47 E-value=0.45 Score=34.48 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=40.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|+|+|. |+. ++++.+.|+.+||+++.. +.=.+||+|-..+++ +-+++||.|+++-|
T Consensus 1 M~I~vN---~k~--~~~~~~~tl~~lr~~~k~---------~~DI~I~NGF~~~~d-----~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKVN---EKE--IETEENTTLFELRKESKP---------DADIVILNGFPTKED-----IELKEGDEVFLIKK 56 (57)
T ss_pred CEEEEC---CEE--EEcCCCcCHHHHHHhhCC---------CCCEEEEcCcccCCc-----cccCCCCEEEEEeC
Confidence 666664 544 667778899999987543 223679999888775 45678999988743
No 91
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=93.41 E-value=0.11 Score=34.55 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.6
Q ss_pred HHhhChHHHHHHHHHHHhChhhHHHHHh
Q 021760 278 DFLRNSQQFQALRTMVQANPQILQQWAL 305 (308)
Q Consensus 278 ~~Lr~~pqf~~lRq~vqqnP~~L~~~L~ 305 (308)
+.|+ +|+|+++.+-+++||+++..+++
T Consensus 6 ~~l~-~P~~~~~l~~~~~nP~~~~~~~~ 32 (41)
T smart00727 6 LRLQ-NPQVQSLLQDMQQNPDMLAQMLQ 32 (41)
T ss_pred HHHc-CHHHHHHHHHHHHCHHHHHHHHH
Confidence 3444 99999999999999999999886
No 92
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=93.29 E-value=0.62 Score=34.69 Aligned_cols=50 Identities=26% Similarity=0.457 Sum_probs=39.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
...++++...||.+|.+.+ + ++.....+..+|+++.. ++-|++||.|.++
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~---~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii 64 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----G---FNTESAIAKVNGKVALE-----DDPVKDGDYVEVI 64 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----C---CCCccEEEEECCEECCC-----CcCcCCCCEEEEE
Confidence 5678888889999988765 5 66677788899999853 5568889998876
No 93
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=93.08 E-value=0.12 Score=35.73 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
.++.+.-|+.+| |.+.++.+|++....+++.-+|.++
T Consensus 3 ~~d~~~AL~~LG---y~~~e~~~av~~~~~~~~~~~e~~i 39 (47)
T PF07499_consen 3 LEDALEALISLG---YSKAEAQKAVSKLLEKPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHSTTS-HHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhhcCCCCCHHHHH
Confidence 578899999999 9999999999998766666677665
No 94
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=93.05 E-value=0.4 Score=34.97 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=42.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+| +|+.+.+ + ..||.+|.+.+ + +..+...+-++|+++. .....+.-+++||.|.++-
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~---~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----D---YEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----C---CCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 56665 4777766 3 35899888754 5 5566677889999986 3345567789999998863
No 95
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.97 E-value=0.11 Score=51.94 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=51.2
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
.++.+...|-.+|...|.++.| ++-...|.|.+||+|.-.+||.+-|++.+-.+.|++.
T Consensus 53 l~k~sL~i~Gselqa~iakklg---i~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLG---IKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcC---CchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 4556667788999999999999 8888999999999999999999999998877666655
No 96
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=92.84 E-value=0.3 Score=35.57 Aligned_cols=40 Identities=30% Similarity=0.388 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
.-.+|++|-|.-|+ +..+++-+.|+-++++||.||+-||+
T Consensus 5 ~rk~VQ~iKEiv~~-hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 5 SRKTVQSIKEIVGC-HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45789999998655 89999999999999999999999996
No 97
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=92.60 E-value=1.3 Score=34.78 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=50.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe----CCEec-CCCCChhhh----ccCCCCEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH----QGKVL-KDVTTLEEN----KVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy----~GKiL-~D~~tL~dy----gIk~g~~I~v 72 (308)
.+++|..+|+.+.+.+.++..+.+|+..|.++.|.++.......|.| +-++| .-+.-|.+| ......+|.+
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~~~v~L 81 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLKKLDL 81 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCCCEEEE
Confidence 46788899999999999999999999999999993311124677777 23443 333334443 2334456666
Q ss_pred EEe
Q 021760 73 MLT 75 (308)
Q Consensus 73 ~v~ 75 (308)
++.
T Consensus 82 ~v~ 84 (86)
T cd06409 82 HLH 84 (86)
T ss_pred EEe
Confidence 554
No 98
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.91 E-value=0.53 Score=36.42 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=33.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G 50 (308)
++.|.|.+..+..+|+++|.++.+ ++.+..+|.|+.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLk---l~~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLE---LPAEHITLSYKS 47 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC---CCchhcEEEecc
Confidence 899999999999999999999999 999999999965
No 99
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=91.60 E-value=0.58 Score=31.49 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=30.5
Q ss_pred HHHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 173 e~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
++.|.+.|++ | -+++.++.-|+.+.+|.++||+.-+.
T Consensus 1 ~e~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 1 DEKIAQFMSITG---ADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHHHH----SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHC---cCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4678898886 6 69999999999999999999986653
No 100
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.77 E-value=0.32 Score=48.74 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~~ 217 (308)
...|.+|+.|| |++-..+.||++.-||-|-|.++|+.-++..
T Consensus 430 ~~~la~Lv~mG---F~e~~A~~ALe~~gnn~~~a~~~L~~s~~n~ 471 (568)
T KOG2561|consen 430 GISLAELVSMG---FEEGKARSALEAGGNNEDTAQRLLSASVANE 471 (568)
T ss_pred hhhHHHHHHhc---cccchHHHHHHhcCCcHHHHHHHHHHhCCCC
Confidence 35699999999 9999999999999999999999999988754
No 101
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=90.71 E-value=1.7 Score=33.58 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=48.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEeCC----Ee-cCCCCChhh----hccCCCCEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQG----KV-LKDVTTLEE----NKVAENSFV 70 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~-~~qkLIy~G----Ki-L~D~~tL~d----ygIk~g~~I 70 (308)
|+|++. .+|..+.+.+.++.+..+|+++|.++++ +.. ....|-|.. .+ |..+.-|.+ |.....++|
T Consensus 1 ~~vK~~-~~~d~~r~~l~~~~~~~~L~~~i~~r~~---~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v 76 (82)
T cd06407 1 VRVKAT-YGEEKIRFRLPPSWGFTELKQEIAKRFK---LDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTI 76 (82)
T ss_pred CEEEEE-eCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeE
Confidence 456665 4677889999999999999999999988 543 466776643 22 333334555 444556677
Q ss_pred EEEEe
Q 021760 71 VVMLT 75 (308)
Q Consensus 71 ~v~v~ 75 (308)
.+.+.
T Consensus 77 ~l~v~ 81 (82)
T cd06407 77 RLLVH 81 (82)
T ss_pred EEEee
Confidence 76653
No 102
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=90.42 E-value=0.08 Score=50.54 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeC---C--CCcHHHHHHHHHH----------HhCCCCCCCCCeE-----EEeCCEecCCCCChhh
Q 021760 2 KVFVKTLKGTHFEIEVK---P--EDKVSDVKKNIET----------VQGSDVYPASQQM-----LIHQGKVLKDVTTLEE 61 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~---~--~~TV~~LK~~I~~----------~~g~~~ip~~~qk-----LIy~GKiL~D~~tL~d 61 (308)
.|++|.+.+-.+.|.+. + +.+|.+||..++. +.+ +|.+.+| |+|+.|.+.|.++|.+
T Consensus 80 tV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~---vp~dKik~~~~~lL~~kkPv~~~ktl~e 156 (309)
T PF12754_consen 80 TVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETR---VPLDKIKNFRCRLLYKKKPVGDSKTLAE 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhccccccccccc---CCHHHhhhhhhhheecCccCCCcCcHHH
Confidence 46667666655554432 2 5789999999999 777 9999999 9999999999999888
Q ss_pred hcc
Q 021760 62 NKV 64 (308)
Q Consensus 62 ygI 64 (308)
..-
T Consensus 157 ~l~ 159 (309)
T PF12754_consen 157 VLA 159 (309)
T ss_dssp ---
T ss_pred HHh
Confidence 743
No 103
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=89.99 E-value=3.3 Score=35.98 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=50.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEe--C-C---EecCCCCChhhhccC-CCCEEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIH--Q-G---KVLKDVTTLEENKVA-ENSFVVVM 73 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~-~~qkLIy--~-G---KiL~D~~tL~dygIk-~g~~I~v~ 73 (308)
.|.|...+|....+.++.+.||.+|.+.|..+.| +.. ...-|.+ . + ..|+...+|.+...+ ....+++.
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~---l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLG---IRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhC---CCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 5778888999999999999999999999999999 632 2234433 1 2 356777888887665 23344444
Q ss_pred Ee
Q 021760 74 LT 75 (308)
Q Consensus 74 v~ 75 (308)
++
T Consensus 82 ~r 83 (207)
T smart00295 82 VK 83 (207)
T ss_pred EE
Confidence 33
No 104
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=89.57 E-value=0.99 Score=35.33 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=44.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
.+...++-...+..||+.++.+.+ +.-+...+...+..|+++++|-+-+|+-...+.+.+.-+
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~---~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLG---ISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH----S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhC---CCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence 345667778899999999999999 777888888888889999999999999888888877543
No 105
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=89.53 E-value=1.5 Score=36.59 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=43.9
Q ss_pred EeCC-CCcHHHHHHHHHHHhCCC-------CCCCCCeEEEeC-----------------CEec---CCCCChhhhccCCC
Q 021760 16 EVKP-EDKVSDVKKNIETVQGSD-------VYPASQQMLIHQ-----------------GKVL---KDVTTLEENKVAEN 67 (308)
Q Consensus 16 eV~~-~~TV~~LK~~I~~~~g~~-------~ip~~~qkLIy~-----------------GKiL---~D~~tL~dygIk~g 67 (308)
.|+. +.||.+|++.|.+..... .+..+.+||++. ..+| +++++|.+|||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4786 889999999998765311 234456677652 1467 77889999999999
Q ss_pred CEEEEEEe
Q 021760 68 SFVVVMLT 75 (308)
Q Consensus 68 ~~I~v~v~ 75 (308)
..|-+..+
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 88887654
No 106
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=89.30 E-value=1.2 Score=32.94 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=47.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
...+++....||.+|.+.+....... .......+..||+++.+ ...++-+++||.|.++-
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~-~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPEL-ALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGG-HTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhcccc-ccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 66788889999999999998886311 12367888899999988 36677789999999873
No 107
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=89.27 E-value=2.4 Score=33.42 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=42.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--e--CCE-ec-CCCCChhhhccCCCCEEEEEEec
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H--QGK-VL-KDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y--~GK-iL-~D~~tL~dygIk~g~~I~v~v~k 76 (308)
..+...++..+||..+++.+.+.+. + ....||- | ++. .| +.+.||.+.+|.+|-.|++=.+.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~---i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFN---I-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT-----TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhC---C-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 3567788999999999999999998 8 6678884 3 232 35 45679999999999887776554
No 108
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=89.05 E-value=1.4 Score=32.23 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=42.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+| +|+.+.+ ....||.+|-+. .+ ++.....+.++|+++..+.- ..+ +++||.|.++.
T Consensus 1 m~i~v---NG~~~~~--~~~~tl~~ll~~----l~---~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 1 MIVVV---NEEQVEV--DEQTTVAALLDS----LG---FPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVT 60 (65)
T ss_pred CEEEE---CCEEEEc--CCCCcHHHHHHH----cC---CCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEe
Confidence 56665 4766555 467788877654 46 77889999999998854332 245 99999998864
No 109
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=88.98 E-value=2 Score=32.01 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=52.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-eCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 9 ~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI-y~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
+|+...++...+..+.-+..+--+..|...-|++...|- -+|.+|+-++.++|||+.++-++++.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 578888888888887777777766665333677776664 5789999999999999999988887654
No 110
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=88.90 E-value=2.4 Score=32.00 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=42.0
Q ss_pred CCc-EEEEEeCCC-CcHHHHHHHHHHHhCCCCCC--CCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 9 KGT-HFEIEVKPE-DKVSDVKKNIETVQGSDVYP--ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 9 ~gk-~~~leV~~~-~TV~~LK~~I~~~~g~~~ip--~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
.|+ ...+++... .||.+|++.+....+. +- .....+..+|+.+.+ +.-|++||.|.++
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~--l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPE--LAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCch--hhhhccceEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 344 357888866 8999999999887641 11 134566789988875 4578899999887
No 111
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=88.29 E-value=2.2 Score=30.88 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=42.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+| +|+.+ ++....||.+|-+. .+ ++.+...+.++|+++..+. ..+.-+++||.|-++-
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~lL~~----l~---~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 1 MNIQL---NGEPR--ELPDGESVAALLAR----EG---LAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVH 61 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHh----cC---CCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEE
Confidence 55555 47654 55667888887754 46 7778888899999886432 3344589999998764
No 112
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=88.28 E-value=3.4 Score=31.59 Aligned_cols=59 Identities=12% Similarity=0.264 Sum_probs=40.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCC---CCC-----CCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSD---VYP-----ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~---~ip-----~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
....+++. ..||.+|.+.|...+... .+. .....+..+|+..+++.. .-|++||.|.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEe
Confidence 35677886 889999999998775410 000 123566778988765532 568999999887
No 113
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=87.60 E-value=3.2 Score=30.37 Aligned_cols=61 Identities=7% Similarity=0.166 Sum_probs=42.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+|. |+.+.+ ....||.+|.+. .+ +......+-.+|+++..+ ..+++-+++||.|.++-
T Consensus 1 m~i~vN---g~~~~~--~~~~tl~~ll~~----l~---~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 1 MQILFN---DQPMQC--AAGQTVHELLEQ----LN---QLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_pred CEEEEC---CeEEEc--CCCCCHHHHHHH----cC---CCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEE
Confidence 566664 766555 567789988865 34 445667888999998522 23445689999998863
No 114
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=85.93 E-value=5.1 Score=28.82 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=39.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+| +|+.+ ++....||.+|.+.+ + +. ....+.++|+++..+. ..+.-+++||.|.++-
T Consensus 1 m~i~v---Ng~~~--~~~~~~tl~~ll~~l----~---~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 1 MDIQL---NQQTL--SLPDGATVADALAAY----G---AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQ 60 (65)
T ss_pred CEEEE---CCEEE--ECCCCCcHHHHHHhh----C---CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEe
Confidence 55555 46654 456677899888754 3 43 3467789999885432 2334488999998874
No 115
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=85.71 E-value=0.36 Score=36.99 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 188 DRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 188 ~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
.+.+++.||.-.|+|+++||.||++-
T Consensus 45 ~e~~i~eal~~~~fDvekAl~~Ll~~ 70 (79)
T PF08938_consen 45 PEEQIKEALWHYYFDVEKALDYLLSK 70 (79)
T ss_dssp -CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 88999999999999999999999987
No 116
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=85.25 E-value=4.3 Score=30.34 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=36.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G 50 (308)
+|+++. ++..+.+.+..+.|..+|+.+|...++ +.....+|-|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~---~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFG---LDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhC---CCCCCeEEEEEC
Confidence 455654 677888999999999999999999998 655678888864
No 117
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=84.90 E-value=1.8 Score=42.59 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=51.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecCC-CCChhhhccCCCC
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENS 68 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~D-~~tL~dygIk~g~ 68 (308)
.|.||.-+|+.+.+.+..+.||.+|+..|...... .....+.|+ |--|.|.| +.||++-||.+.-
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~--~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsv 374 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPG--DSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSV 374 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCC--CcCCceeeeecCCCcccCCcchhHHhccchhhh
Confidence 47889889999999999999999999999988762 334456665 55688855 6799999998743
No 118
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.86 E-value=0.87 Score=44.00 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=44.6
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe---CCEec-----CCCCChhhhccCCCCEEEEE
Q 021760 16 EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVL-----KDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 16 eV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy---~GKiL-----~D~~tL~dygIk~g~~I~v~ 73 (308)
-|+-.-||.+||+++..+.| +...++||+| .||.- +.++.|-.|+|++||.+.|-
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VG---vk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVG---VKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEEeehHHHHHHHHhccccc---cccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 34556699999999999999 8899999987 45543 34578999999999988764
No 119
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=84.01 E-value=1.5 Score=44.91 Aligned_cols=39 Identities=31% Similarity=0.601 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhcC-ChHHHHHHHHhCC
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGI 214 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEYL~~GI 214 (308)
...|.+|++|| |+.+.+.|||-+.-| +-+-|..||.-.+
T Consensus 559 qs~I~qL~~mG---fp~~~~~rAL~~tgNqDaEsAMNWLFqHM 598 (749)
T COG5207 559 QSLIRQLVDMG---FPEEDAARALGITGNQDAESAMNWLFQHM 598 (749)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHhhccCcchHHHHHHHHhhc
Confidence 56899999999 999999999998877 7899999999875
No 120
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=83.51 E-value=3.5 Score=31.16 Aligned_cols=64 Identities=19% Similarity=0.071 Sum_probs=45.9
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC--C--EecCCCCChhhhccCCCCEEEE
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--G--KVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~--G--KiL~D~~tL~dygIk~g~~I~v 72 (308)
+.|-..+|+.-.+.|.+..||.++-.++.++.| +.++...|.+. + +.++.+..... -.+..|.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~---l~~~~~~v~~~~~~~~~~~~~~~d~~~---L~~~El~V 69 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRG---LNPECCDVFLLGLDEKKPLDLDTDSSS---LAGEELEV 69 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcC---CCHHHEEEEEecCCCcCCcCchhhhhh---hcCCEEEE
Confidence 456667899999999999999999999999999 77777766554 4 45544443333 34444554
No 121
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=83.42 E-value=4.2 Score=29.50 Aligned_cols=57 Identities=9% Similarity=0.242 Sum_probs=40.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
++|+.+ +++...||.+|.+++ + ++.+...+.++|+++..+ ...++-|++||.|.++-
T Consensus 4 iNg~~~--~~~~~~tv~~ll~~l----~---~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 4 VNGEPR--EVEEGATLAELLEEL----G---LDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred ECCeEE--EcCCCCCHHHHHHHc----C---CCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 356554 446678999988764 4 567788889999998543 23345689999998863
No 122
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=82.92 E-value=2.1 Score=34.34 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=22.9
Q ss_pred EEEeCCEecCCCCChhhh-ccCCCCEEEEEEecC
Q 021760 45 MLIHQGKVLKDVTTLEEN-KVAENSFVVVMLTKS 77 (308)
Q Consensus 45 kLIy~GKiL~D~~tL~dy-gIk~g~~I~v~v~k~ 77 (308)
.|-|.||.|.++++|++| |-.+...|+|-+.++
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~ 36 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKR 36 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccC
Confidence 578999999999999999 223344444444443
No 123
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=82.86 E-value=0.45 Score=48.48 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
-|..++.|++|| |.-.+|++||--..||-+|+|+|.++
T Consensus 621 dE~~~~Slle~G---ln~n~~Rkal~~~n~d~~r~V~w~~N 658 (749)
T COG5207 621 DESKARSLLENG---LNPNLCRKALMDMNTDSKRRVVWCIN 658 (749)
T ss_pred cHHHHHHHHHcC---CCHHHHHHHHHHccCCchheEEEEEe
Confidence 478899999999 99999999999999999999999998
No 124
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=82.73 E-value=5.1 Score=39.88 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=58.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe----CCEe--cCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH----QGKV--LKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy----~GKi--L~D~~tL~dygIk~g~~I~v~v 74 (308)
|.+.||...| ...+++.++++..-|-.+|-.....+ +.++++.+.- .|.+ +..++++.++|++.|+.|+|-.
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n-~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVN-YSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccC-CCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 7788997776 57899999999999999887766544 7777877764 3443 3567899999999999999987
Q ss_pred e
Q 021760 75 T 75 (308)
Q Consensus 75 ~ 75 (308)
+
T Consensus 79 s 79 (571)
T COG5100 79 S 79 (571)
T ss_pred c
Confidence 4
No 125
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=82.37 E-value=7.2 Score=29.14 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=43.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|.++|. ++|+. +++....|+.+|-+. .+ +..+..-+.++|.++..+. ..++-+++||.|.++-
T Consensus 1 ~~m~i~-~ng~~--~e~~~~~tv~dLL~~----l~---~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~ 63 (68)
T COG2104 1 MPMTIQ-LNGKE--VEIAEGTTVADLLAQ----LG---LNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVR 63 (68)
T ss_pred CcEEEE-ECCEE--EEcCCCCcHHHHHHH----hC---CCCceEEEEECCEEccchh-hhhccccCCCEEEEEE
Confidence 445555 34665 455656899987764 55 7788888899999986432 3455688889888763
No 126
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=81.81 E-value=6.4 Score=30.58 Aligned_cols=57 Identities=5% Similarity=0.161 Sum_probs=40.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
++|+.+ +++...||.+|-+. .+ ++....-+-++|.++. .....++-+++||.|.++.
T Consensus 23 VNG~~~--~~~~~~tl~~LL~~----l~---~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 23 INDQSI--QVDISSSLAQIIAQ----LS---LPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ECCeEE--EcCCCCcHHHHHHH----cC---CCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEE
Confidence 356554 44567788877664 35 7777778889999983 3446677799999998874
No 127
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=81.35 E-value=1.8 Score=42.47 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=24.7
Q ss_pred ccccCCcHHHHHHHHHHhcCCccCHHHHHHHHH
Q 021760 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALR 197 (308)
Q Consensus 165 ~l~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALr 197 (308)
.++..--|+++|+.++.|| |.||+|+.-.|
T Consensus 314 ~~~~~~p~ddvidKv~~MG---f~rDqV~a~v~ 343 (358)
T PF07223_consen 314 QSGNRHPYDDVIDKVASMG---FRRDQVRATVR 343 (358)
T ss_pred cccccCcHHHHHHHHHHcC---CcHHHHHHHHH
Confidence 3555667999999999999 99999987444
No 128
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=81.11 E-value=3.2 Score=32.35 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=27.4
Q ss_pred CCcHHHHHHHHHH-HhCCCCCCCC----CeEEEeCCEe----cCCCCChhhhccCCCCEEEEE
Q 021760 20 EDKVSDVKKNIET-VQGSDVYPAS----QQMLIHQGKV----LKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 20 ~~TV~~LK~~I~~-~~g~~~ip~~----~qkLIy~GKi----L~D~~tL~dygIk~g~~I~v~ 73 (308)
..|+++|-++|-+ +.| +-.- .-++||..-. -..+++|+++||++|++|.|.
T Consensus 8 ~~TL~~lv~~Vlk~~Lg---~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLG---MNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp T-BHHHHHHHCCCCCS-----SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred hCcHHHHHHHHHHhccC---CCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 5799999998744 555 2221 2234443321 123478999999999998864
No 129
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=80.75 E-value=8.1 Score=28.44 Aligned_cols=61 Identities=10% Similarity=0.205 Sum_probs=41.6
Q ss_pred CEEEEEeCCCcEEEEEeCCC-CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~-~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+| +|+.+.+ ... .||.+|-+ ..+ +.....-+-++|+++.-+ ...++-|++||.|.++.
T Consensus 1 m~I~v---NG~~~~~--~~~~~tv~~lL~----~l~---~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 1 MNLKI---NGNQIEV--PESVKTVAELLT----HLE---LDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CEEEE---CCEEEEc--CCCcccHHHHHH----HcC---CCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEE
Confidence 55665 4776544 444 57877665 345 667777788999998533 34556689999998864
No 130
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=80.54 E-value=7.4 Score=30.52 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=35.0
Q ss_pred EEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCE
Q 021760 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK 51 (308)
Q Consensus 3 I~Vktl-~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GK 51 (308)
|+||.. .|..+.+.|.++.+..+|.++|.++++ +. ..++|-|...
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~---~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFG---FK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhC---CC-CceEEEEEcC
Confidence 445543 677899999999999999999999999 63 5666666543
No 131
>smart00455 RBD Raf-like Ras-binding domain.
Probab=80.46 E-value=6.4 Score=29.42 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=41.2
Q ss_pred EEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC--EecCCC
Q 021760 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG--KVLKDV 56 (308)
Q Consensus 4 ~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G--KiL~D~ 56 (308)
.|-..+|+...+.+.+..||.++-.+|.++.| +.++...|+..| |.|+=+
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~---l~~~~~~v~~~g~~k~ldl~ 54 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRG---LNPECCVVRLRGEKKPLDLN 54 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcC---CCHHHEEEEEcCCCcceecC
Confidence 45556899999999999999999999999999 888888888755 455433
No 132
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=79.62 E-value=13 Score=37.67 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=55.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC---CCCCCCeEEE-eCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VYPASQQMLI-HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~---~ip~~~qkLI-y~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
+|+|...+ +.+++-+..+..|.+|-..|-+..+.+ ......-.|. -+|..|+.+++|.+.+|.||+.+++.-+
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 57777443 457777888889999999999888732 0122234443 4788999999999999999999998753
No 133
>PRK07440 hypothetical protein; Provisional
Probab=79.53 E-value=8.3 Score=28.71 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
++|+. +++....||.+|-+ ..+ +.....-+-++|+++.-+ ...++-+++||.|.++.
T Consensus 9 vNG~~--~~~~~~~tl~~lL~----~l~---~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 9 VNGET--RTCSSGTSLPDLLQ----QLG---FNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVT 65 (70)
T ss_pred ECCEE--EEcCCCCCHHHHHH----HcC---CCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEE
Confidence 45765 45566788888775 345 667788888999998522 34556689999998764
No 134
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=79.47 E-value=2.7 Score=44.20 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHh-cCChHHHHHHHHhCCC
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRAA-YNNPERAVEYLYSGIP 215 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrAa-fnNpdRAvEYL~~GIP 215 (308)
+..|.+|++|| |+.+.|.|||-.. ..+-+-|..||+..+=
T Consensus 572 ~s~i~qL~~MG---Fp~eac~rAly~tgN~~aEaA~NWl~~HMd 612 (763)
T KOG0944|consen 572 RSVISQLVEMG---FPEEACRRALYYTGNSGAEAASNWLMEHMD 612 (763)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHhhhcCccHHHHHHHHHHhcc
Confidence 57899999999 9999999999998 5578999999998864
No 135
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=79.43 E-value=11 Score=30.84 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=41.9
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCEecCCCCChhhh--ccC-CCCEEEEEEec
Q 021760 16 EVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (308)
Q Consensus 16 eV~~~~TV~~LK~~I~~~~g~~~ip~~~-qkLIy~GKiL~D~~tL~dy--gIk-~g~~I~v~v~k 76 (308)
-|..+.||.+|...|....+ +.+++ +-|+.++.+...+.+|+++ .-+ ++++|+|..+.
T Consensus 46 lVp~~~tv~~f~~~irk~l~---l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys~ 107 (112)
T cd01611 46 LVPSDLTVGQFVYIIRKRIQ---LRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSS 107 (112)
T ss_pred EecCCCCHHHHHHHHHHHhC---CCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEec
Confidence 47889999999999999987 65555 4555566555777787765 223 47788887754
No 136
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=79.23 E-value=6.7 Score=28.36 Aligned_cols=57 Identities=9% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
++|+.+.+ ....||.+|.+.+ + ++.+...+.++|+++..+ ...++-|++||.|.++-
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~---~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----G---LDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVT 59 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----C---CCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 45666544 5677899988753 4 666777888999988432 23445689999998864
No 137
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=79.17 E-value=1.6 Score=28.72 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=19.1
Q ss_pred hHHhhChHHHHHHHHHHHhChhhHHH
Q 021760 277 LDFLRNSQQFQALRTMVQANPQILQQ 302 (308)
Q Consensus 277 l~~Lr~~pqf~~lRq~vqqnP~~L~~ 302 (308)
+..+.++|+| +|+++++||++...
T Consensus 17 l~~~~~nP~~--~~~~~~~nP~~~~~ 40 (41)
T smart00727 17 LQDMQQNPDM--LAQMLQENPQLLQL 40 (41)
T ss_pred HHHHHHCHHH--HHHHHHhCHHhHhh
Confidence 5567789998 58899889998764
No 138
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=78.92 E-value=7.5 Score=29.08 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=34.9
Q ss_pred EEEEEeCCCcEEE-EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 021760 2 KVFVKTLKGTHFE-IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (308)
Q Consensus 2 ~I~Vktl~gk~~~-leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G 50 (308)
+|+++ .++..+. +.+..+.+..+|+.+|...++ ......+|.|..
T Consensus 3 ~vK~~-~~~~~~~~~~~~~~~s~~~L~~~i~~~~~---~~~~~~~l~Y~D 48 (84)
T PF00564_consen 3 RVKVR-YGGDIRRIISLPSDVSFDDLRSKIREKFG---LLDEDFQLKYKD 48 (84)
T ss_dssp EEEEE-ETTEEEEEEEECSTSHHHHHHHHHHHHHT---TSTSSEEEEEEE
T ss_pred EEEEE-ECCeeEEEEEcCCCCCHHHHHHHHHHHhC---CCCccEEEEeeC
Confidence 34444 3455555 899999999999999999999 666788998853
No 139
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=77.48 E-value=9.5 Score=28.27 Aligned_cols=45 Identities=22% Similarity=0.145 Sum_probs=34.2
Q ss_pred EEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 021760 2 KVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~-~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G 50 (308)
+|+++ .+|..+.+.+. .+.+..+|+.+|...++ +.....+|-|..
T Consensus 2 ~vK~~-~~~~~~~~~~~~~~~s~~~L~~~i~~~~~---~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVK-YGGEIRRFVVVSRSISFEDLRSKIAEKFG---LDAVSFKLKYPD 47 (81)
T ss_pred cEEEE-ecCCCEEEEEecCCCCHHHHHHHHHHHhC---CCCCcEEEEeeC
Confidence 45565 34667788887 88999999999999998 544566777754
No 140
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=77.17 E-value=5.1 Score=41.40 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=42.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe--C--CE-ecCCC-------------CChhhhccCC
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH--Q--GK-VLKDV-------------TTLEENKVAE 66 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~------~~qkLIy--~--GK-iL~D~-------------~tL~dygIk~ 66 (308)
..+.+.|-.++||.++|+||-+..=++ .|. ++.-|-+ + |+ +|.|. .||..|+|.+
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~-~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKN-TPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTT-S-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcC-CCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 458889989999999999997664322 332 3344433 2 33 56553 3699999999
Q ss_pred CCEEEEEEec
Q 021760 67 NSFVVVMLTK 76 (308)
Q Consensus 67 g~~I~v~v~k 76 (308)
|.+|.++.+.
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9988887654
No 141
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=77.09 E-value=7.1 Score=37.86 Aligned_cols=62 Identities=8% Similarity=0.135 Sum_probs=44.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|+|+| +|+.+ ++....||.+|-+. .+ ++.+...+.+||+++.. ....++-|++||.|.++--
T Consensus 1 M~I~V---NGk~~--el~e~~TL~dLL~~----L~---i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 1 MRIRL---NGEPR--QVPAGLTIAALLAE----LG---LAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CEEEE---CCEEE--ecCCCCcHHHHHHH----cC---CCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEE
Confidence 56655 47654 45667788887764 46 77888999999999942 3345667899999888754
No 142
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=75.45 E-value=5 Score=36.17 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=32.1
Q ss_pred HHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 174 ~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
.+|.+|-++ | +.=-+|..||..+-+|-|.|++||--
T Consensus 6 ~~ik~LR~~tg---a~~~~ck~AL~~~~gd~~~A~~~lr~ 42 (198)
T PRK12332 6 KLVKELREKTG---AGMMDCKKALEEANGDMEKAIEWLRE 42 (198)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 468888887 7 88889999999999999999999974
No 143
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=74.40 E-value=13 Score=28.66 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=41.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CCEecCCCCChhhhccCCCCEEEEEE
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy-~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
++.+.++++...||+++-+ ..| +|..+..+|+ ||+...-+ |-+++|+.|.|.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLG---VP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLG---VPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcC---CChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 4567889999999988765 478 9999998875 88876543 6788999998864
No 144
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=73.38 E-value=5.6 Score=37.98 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=32.1
Q ss_pred HHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 174 ~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
..|.+|-++ | +.=-+|..||..+-||-|+|+|||--
T Consensus 6 ~~IK~LRe~Tg---agm~dCKkAL~e~~gDiekAi~~LRk 42 (290)
T TIGR00116 6 QLVKELRERTG---AGMMDCKKALTEANGDFEKAIKNLRE 42 (290)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 468888887 7 78889999999999999999999973
No 145
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=73.13 E-value=16 Score=29.49 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=43.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCEecCCCCChhhh---ccCCCCEEEEEEe
Q 021760 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN---KVAENSFVVVMLT 75 (308)
Q Consensus 9 ~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~-qkLIy~GKiL~D~~tL~dy---gIk~g~~I~v~v~ 75 (308)
+.++|- |..+.||.+|...|..... +.+++ +-|+.++..+..+.+|+++ .=.++.+|++...
T Consensus 33 dk~KfL--vp~~~tv~qf~~~ir~rl~---l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Ys 98 (104)
T PF02991_consen 33 DKKKFL--VPKDLTVGQFVYIIRKRLQ---LSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTYS 98 (104)
T ss_dssp SSSEEE--EETTSBHHHHHHHHHHHTT-----TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEEE
T ss_pred CccEEE--EcCCCchhhHHHHhhhhhc---CCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEec
Confidence 334444 5678899999999999987 65553 5667788777888898775 1246778888765
No 146
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=73.05 E-value=21 Score=26.62 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=40.6
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCEecCCCCChhhh
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEEN 62 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy--~GKiL~D~~tL~dy 62 (308)
+.|-..+|+...+.+.+..||.++-.++.++.| +.++...+.. ..|.|+-+.....+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~---L~~~~~~V~~~~~~k~l~~~~d~~~L 61 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRG---LNPECCDVRLVGEKKPLDWDQDSSSL 61 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT-----CCCEEEEEEEEEEEE-TTSBGGGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcC---CCHHHEEEEEcCCCccccCCCceeee
Confidence 456667899999999999999999999999999 7777665543 44667666655544
No 147
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=72.72 E-value=25 Score=27.73 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=44.9
Q ss_pred EEEEeCCCcEEEEEeC-----CCCcHHHHHHHHHHHhCCCCCCC-CCeEEEeCC---Ee--cCCCCChhhh-----ccCC
Q 021760 3 VFVKTLKGTHFEIEVK-----PEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQG---KV--LKDVTTLEEN-----KVAE 66 (308)
Q Consensus 3 I~Vktl~gk~~~leV~-----~~~TV~~LK~~I~~~~g~~~ip~-~~qkLIy~G---Ki--L~D~~tL~dy-----gIk~ 66 (308)
|+++ .+|....+.+. ++.+..+|+++|.+.++ ++. ....|.|.. .. |.++.-|.++ +-..
T Consensus 3 vKv~-y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~---l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~ 78 (91)
T cd06398 3 VKVK-YGGTLRRFTFPVAENQLDLNMDGLREKVEELFS---LSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSR 78 (91)
T ss_pred EEEE-eCCEEEEEEeccccccCCCCHHHHHHHHHHHhC---CCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCC
Confidence 4444 35555556655 47899999999999998 766 567777743 22 4444444443 2235
Q ss_pred CCEEEEEEec
Q 021760 67 NSFVVVMLTK 76 (308)
Q Consensus 67 g~~I~v~v~k 76 (308)
+.+|.+.++.
T Consensus 79 ~~~lrl~v~~ 88 (91)
T cd06398 79 LNPLRIDVTV 88 (91)
T ss_pred CceEEEEEEE
Confidence 7778777653
No 148
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=72.56 E-value=28 Score=27.25 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=46.1
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE------eCCEecCCCCChhhh----ccCCCCEEEE
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------HQGKVLKDVTTLEEN----KVAENSFVVV 72 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI------y~GKiL~D~~tL~dy----gIk~g~~I~v 72 (308)
|+|-..+|....|.|+..+|++++-+.+..+.++. +...--|+ +=-+.|+|+..|-++ ++..+..|++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~--~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~f 82 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQ--DDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLFF 82 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCC--CCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEEE
Confidence 44555689999999999999999999999998843 22233332 224678888765444 5545554443
No 149
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=71.57 E-value=18 Score=30.15 Aligned_cols=59 Identities=14% Similarity=0.248 Sum_probs=44.6
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhh---ccCCCCEEEEEEec
Q 021760 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN---KVAENSFVVVMLTK 76 (308)
Q Consensus 15 leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dy---gIk~g~~I~v~v~k 76 (308)
+=|..+.||.++...|..+.+ +.+++.-|+.++.++..+.+++++ .=.++.+|++..+.
T Consensus 45 llVP~d~tV~qF~~iIRkrl~---l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys~ 106 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALG---TSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVRT 106 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcC---CChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEcc
Confidence 358889999999999999998 878886555677667777788765 12356788887653
No 150
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=70.91 E-value=1.4 Score=30.56 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=12.9
Q ss_pred HHHHH-HhcCCccCHHHHHHHHHH
Q 021760 176 VQQIL-DMGGGSWDRETVIRALRA 198 (308)
Q Consensus 176 v~~i~-~MG~~~f~r~qv~~ALrA 198 (308)
|..|- -|| |+|++|..||+.
T Consensus 6 v~~Ls~tMG---Y~kdeI~eaL~~ 26 (46)
T PF08587_consen 6 VSKLSKTMG---YDKDEIYEALES 26 (46)
T ss_dssp HHHHHCTT------HHHHHHHCCS
T ss_pred HHHHHHHhC---CCHHHHHHHHHc
Confidence 44443 499 999999999996
No 151
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=70.88 E-value=13 Score=39.49 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=47.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEec--CCCCChhhhccCCCCEEEEEEecCC
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL--KDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL--~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
.++..+.+-++++.|+..|+..|...+| +|.+.|-|+|.|... .|..+..--| -.+-|+++....+
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tg---ipe~~qeLL~e~~~~h~~~~~Q~~~dg--~~~~l~l~~~~~~ 389 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTG---IPEGKQELLFEGGLSHLEDSAQCIPDG--LDSPLYLVSDQDK 389 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhC---CCCccceeeeecCccccCcccccCCCC--CCCceEEEecCCC
Confidence 3566788899999999999999999999 999999999998654 4422211222 2345666655433
No 152
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=69.92 E-value=4.1 Score=29.81 Aligned_cols=20 Identities=20% Similarity=0.680 Sum_probs=18.6
Q ss_pred HHHHHHHHHhChhhHHHHHh
Q 021760 286 FQALRTMVQANPQILQQWAL 305 (308)
Q Consensus 286 f~~lRq~vqqnP~~L~~~L~ 305 (308)
|++|+.+|++||++.+.+|.
T Consensus 2 ~~~lt~~I~~~p~l~ekIL~ 21 (64)
T PF09494_consen 2 FEALTKLIRSDPELYEKILM 21 (64)
T ss_pred HHHHHHHHHcCHHHHHHHHc
Confidence 78999999999999999885
No 153
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=69.72 E-value=19 Score=27.91 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=28.5
Q ss_pred EEEEEeCCCcEEEEEeCC--CCcHHHHHHHHHHHhCCCCCC
Q 021760 2 KVFVKTLKGTHFEIEVKP--EDKVSDVKKNIETVQGSDVYP 40 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~--~~TV~~LK~~I~~~~g~~~ip 40 (308)
+|++. .+|.+..+.+++ +.+..+|++.|...++ +.
T Consensus 2 ~vKat-y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~---l~ 38 (81)
T cd06396 2 NLKVT-YNGESQSFLVSDSENTTWASVEAMVKVSFG---LN 38 (81)
T ss_pred EEEEE-ECCeEEEEEecCCCCCCHHHHHHHHHHHhC---CC
Confidence 34444 567788888988 7799999999999998 66
No 154
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=69.69 E-value=45 Score=25.00 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=37.2
Q ss_pred EEEEeCCCc----EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-e---CC--EecCCCCC
Q 021760 3 VFVKTLKGT----HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-H---QG--KVLKDVTT 58 (308)
Q Consensus 3 I~Vktl~gk----~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI-y---~G--KiL~D~~t 58 (308)
|.|-..++. .-.|.|..++|+.+|-+.+.++++.. -.+....|+ + .| +.|.|+..
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~-~~~~~y~L~~~~~~~~~er~L~~~E~ 69 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLA-EDPSDYCLVEVEESGGEERPLDDDEC 69 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTS-SSGGGEEEEEEECTTTEEEEETTTSB
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCC-CCCCCEEEEEEEcCCCEEEEcCCCCc
Confidence 444445555 77899999999999999999999921 134455663 2 23 56766543
No 155
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=69.68 E-value=14 Score=33.47 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=31.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC---CeEE--EeCCEe---cCCCCChhhh
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPAS---QQML--IHQGKV---LKDVTTLEEN 62 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~---~qkL--Iy~GKi---L~D~~tL~dy 62 (308)
.+.+-|..+.||.+|.+++..+.+ ++.+ .+|| ++++|+ +..+..|.++
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~---~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVG---FSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT-------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEECCCCCHHHHHHHHHHHcC---CCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 577888999999999999999988 5444 5565 578876 6778888886
No 156
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=69.43 E-value=46 Score=25.05 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=41.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCC----EecCCC-CChhh--hccCCCCEEEEEEec
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQG----KVLKDV-TTLEE--NKVAENSFVVVMLTK 76 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~G----KiL~D~-~tL~d--ygIk~g~~I~v~v~k 76 (308)
+....|.|+.++|..+|-+.+.++++.+. .+....|+ +.+ +.|.|+ ..|.- .....+....+++++
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~-~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~~~~F~lr~ 86 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDD-DPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQREDLRFLLRK 86 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcC-CcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCCcEEEEEec
Confidence 55677999999999999999999999432 35555554 232 456554 45432 223334444455443
No 157
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=69.10 E-value=6.2 Score=30.69 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=38.3
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCC----CCCCCCeEEEeCCE-ec------CCCCChhhhccCCCCEEEEE
Q 021760 15 IEVKPEDKVSDVKKNIETVQGSD----VYPASQQMLIHQGK-VL------KDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 15 leV~~~~TV~~LK~~I~~~~g~~----~ip~~~qkLIy~GK-iL------~D~~tL~dygIk~g~~I~v~ 73 (308)
|+|++++|+.+|-+.+.+..... .+..+.-.|++.+- .| +=+++|.++ +.+|+.|+|.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 68899999999999998874300 01122234444442 12 236889999 9999988874
No 158
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=68.88 E-value=12 Score=34.72 Aligned_cols=71 Identities=18% Similarity=0.347 Sum_probs=46.2
Q ss_pred EEEEEeCC--CcEEE----EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe----CCEe--cCCCCChhhhccCCCCE
Q 021760 2 KVFVKTLK--GTHFE----IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH----QGKV--LKDVTTLEENKVAENSF 69 (308)
Q Consensus 2 ~I~Vktl~--gk~~~----leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy----~GKi--L~D~~tL~dygIk~g~~ 69 (308)
-|++|..+ .+++. +-|+.+.+|.+|-..|.+..| ++.+.--++| .+++ |+.+.++....|.+||.
T Consensus 70 LlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g---~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdI 146 (249)
T PF12436_consen 70 LLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAG---LPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDI 146 (249)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT-----TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEE
T ss_pred EEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCE
Confidence 36777553 23332 567889999999999999999 8887666555 4544 68899999999999998
Q ss_pred EEEEEe
Q 021760 70 VVVMLT 75 (308)
Q Consensus 70 I~v~v~ 75 (308)
|++-..
T Consensus 147 i~fQ~~ 152 (249)
T PF12436_consen 147 ICFQRA 152 (249)
T ss_dssp EEEEE-
T ss_pred EEEEec
Confidence 887553
No 159
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=68.68 E-value=6 Score=30.23 Aligned_cols=40 Identities=25% Similarity=0.494 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCccCHHHHHHHHHHhcCC-hHHHHHHHHhCCC
Q 021760 175 TVQQILDMGGGSWDRETVIRALRAAYNN-PERAVEYLYSGIP 215 (308)
Q Consensus 175 ~v~~i~~MG~~~f~r~qv~~ALrAafnN-pdRAvEYL~~GIP 215 (308)
-+--||=+|+|.|+-++-..|++-|-.+ -.+.++||+ |.|
T Consensus 20 eLvALmwiGRGd~~~eew~~a~~~A~~~~~~~ta~YLl-~~p 60 (75)
T PF12616_consen 20 ELVALMWIGRGDFEAEEWEEAVAEARERASARTADYLL-GTP 60 (75)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhccchHHHHHH-cCC
Confidence 3556888999999999999999888554 456889997 544
No 160
>CHL00098 tsf elongation factor Ts
Probab=68.32 E-value=9.1 Score=34.59 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=31.7
Q ss_pred HHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 174 ~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
.+|.+|-++ | ..=-+|..||-.+-+|-|.|++||--
T Consensus 3 ~~ik~LR~~Tg---ag~~dck~AL~e~~gd~~~A~~~Lr~ 39 (200)
T CHL00098 3 ELVKELRDKTG---AGMMDCKKALQEANGDFEKALESLRQ 39 (200)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467788776 7 77889999999999999999999975
No 161
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=68.22 E-value=5.8 Score=38.66 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=52.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---EecC--CCCChhhhccCCCCE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KVLK--DVTTLEENKVAENSF 69 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G---KiL~--D~~tL~dygIk~g~~ 69 (308)
.|.||..+|+.+...+..+++|..|-..++.+... .+-+..+|+++- |.|. .+.||.++||.+-.+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg--~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDG--SDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcc--cccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 47899999998888888899999988877766542 667888999876 6664 467999999998654
No 162
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=67.85 E-value=23 Score=26.95 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=40.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe------CCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy------~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
++|-+=.+++.||.+|+..|..++.+- +|-+. .|.. .|--|+.+-.+++. +..|+.|.|+++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kL-YP~~~-~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKL-YPNEP-ELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHH-CCCCC-CceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 567667889999999999999887642 44333 3321 23334444455554 3467888877754
No 163
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=67.68 E-value=22 Score=27.45 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=32.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G 50 (308)
++.|.+.+..+..+|..+|.++.. .+++..+|-|.-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~---l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALP---QQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhc---CChhhcEEEecC
Confidence 566788999999999999999999 899999999953
No 164
>PRK09377 tsf elongation factor Ts; Provisional
Probab=66.86 E-value=9.4 Score=36.45 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=32.2
Q ss_pred HHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 174 ~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
..|.+|-++ | +.=-+|..||..+-+|-|.|++||--
T Consensus 7 ~~IK~LR~~Tg---agm~dCKkAL~e~~gD~ekAi~~Lrk 43 (290)
T PRK09377 7 ALVKELRERTG---AGMMDCKKALTEADGDIEKAIEWLRK 43 (290)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 568888887 7 88889999999999999999999974
No 165
>PF15652 Tox-SHH: HNH/Endo VII superfamily toxin with a SHH signature
Probab=65.83 E-value=7.9 Score=31.17 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=27.9
Q ss_pred cCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcC
Q 021760 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 201 (308)
Q Consensus 168 ~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafn 201 (308)
.-.||..++.+|.+-| |+++....+||++|+
T Consensus 67 ~~~Ef~~~~~eM~dAG---V~~~~~~~~l~~~Yk 97 (100)
T PF15652_consen 67 LQEEFNNSYREMFDAG---VSKECRKKALKAQYK 97 (100)
T ss_pred HHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHh
Confidence 3568889999999999 999999999999886
No 166
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=65.73 E-value=15 Score=30.37 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=33.3
Q ss_pred HHHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 173 e~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
++.|.-+|+- | -.|+.+++||+.+-++.-.|+-||..+
T Consensus 77 ~edI~lv~~q~g---vs~~~A~~AL~~~~gDl~~AI~~L~~~ 115 (115)
T PRK06369 77 EEDIELVAEQTG---VSEEEARKALEEANGDLAEAILKLSSE 115 (115)
T ss_pred HHHHHHHHHHHC---cCHHHHHHHHHHcCCcHHHHHHHHhcC
Confidence 5678888885 7 899999999999999999999999753
No 167
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=65.24 E-value=42 Score=27.01 Aligned_cols=73 Identities=18% Similarity=0.093 Sum_probs=44.8
Q ss_pred EEEEeCC-CcEEEEEeCCCCcHHHHHHHHHHHh----CCCCCCCC-CeEEEeCCEe--cCCCCChhhh-----ccCCCCE
Q 021760 3 VFVKTLK-GTHFEIEVKPEDKVSDVKKNIETVQ----GSDVYPAS-QQMLIHQGKV--LKDVTTLEEN-----KVAENSF 69 (308)
Q Consensus 3 I~Vktl~-gk~~~leV~~~~TV~~LK~~I~~~~----g~~~ip~~-~qkLIy~GKi--L~D~~tL~dy-----gIk~g~~ 69 (308)
|.|...+ ...+.+.++.++|+.+|.+.+-.+. +.. -..+ +..|--.|+. |..+..|.+| .++.|..
T Consensus 20 v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~-~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~ 98 (108)
T smart00144 20 IVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQV-DPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGRE 98 (108)
T ss_pred EEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccc-cCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCC
Confidence 3444332 3578999999999999999887652 111 1222 4445445532 5555556555 3677888
Q ss_pred EEEEEec
Q 021760 70 VVVMLTK 76 (308)
Q Consensus 70 I~v~v~k 76 (308)
++|++..
T Consensus 99 ~~L~L~~ 105 (108)
T smart00144 99 PHLVLMT 105 (108)
T ss_pred ceEEEEe
Confidence 8887754
No 168
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=65.04 E-value=46 Score=28.65 Aligned_cols=74 Identities=16% Similarity=0.094 Sum_probs=40.0
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCC-CCCCC-Ce---EEE-eCCEecCCCCChhhhccCCCCEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSD-VYPAS-QQ---MLI-HQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~-~~~TV~~LK~~I~~~~g~~-~ip~~-~q---kLI-y~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
|||+|+. ....+.|-+. ...||.+|-++--..+.+- ...++ +. +|- -.|-+|+.+..|.+. +.+.++|+.+
T Consensus 1 mkvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V~~l~~~dggiLd~DD~l~dV-~dd~d~liAv 78 (145)
T PF12053_consen 1 MKVTVCF-GRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVVHHLEYTDGGILDPDDVLCDV-VDDRDQLIAV 78 (145)
T ss_dssp -EEEEEE-TTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEEEEEE-SSS-EE-TTS-HHHH-S-TTEEEEEE
T ss_pred CeEEEEe-CCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEEeeEEecCCceeccccceeEe-ccChhhhhee
Confidence 8999995 4456777775 5589999876654333210 02223 22 233 256699888888886 5677888777
Q ss_pred Eec
Q 021760 74 LTK 76 (308)
Q Consensus 74 v~k 76 (308)
..-
T Consensus 79 ydE 81 (145)
T PF12053_consen 79 YDE 81 (145)
T ss_dssp EEE
T ss_pred ecc
Confidence 655
No 169
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=64.20 E-value=67 Score=25.01 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=40.8
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCEec-CCCCChhhh--ccCCCCEEEEEEec
Q 021760 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (308)
Q Consensus 15 leV~~~~TV~~LK~~I~~~~g~~~ip~~~-qkLIy~GKiL-~D~~tL~dy--gIk~g~~I~v~v~k 76 (308)
+-|..+.||.+|...|.++.+ +..++ +-|+.+...+ ..+.+++++ ..+++++|+|..+.
T Consensus 20 flv~~~~tv~~~~~~lrk~L~---l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Ys~ 82 (87)
T cd01612 20 FKISATQSFQAVIDFLRKRLK---LKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSYCK 82 (87)
T ss_pred EEeCCCCCHHHHHHHHHHHhC---CCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEEeC
Confidence 457899999999999999988 65554 4444455434 455666554 22678899887654
No 170
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=63.55 E-value=9.9 Score=34.26 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcCCh
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNP 203 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNp 203 (308)
.+++.|.-|+.+| |.|.++.+|++...++-
T Consensus 143 ~~~ea~~AL~~LG---y~~~ea~~al~~v~~~~ 172 (196)
T PRK13901 143 KFKELEQSIVNMG---FDRKLVNSAIKEIMLLD 172 (196)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHhcch
Confidence 4688999999999 99999999999877654
No 171
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=62.84 E-value=50 Score=24.88 Aligned_cols=54 Identities=6% Similarity=0.114 Sum_probs=32.9
Q ss_pred EEeCC-CCcHHHHHHHHHHHhCC--CCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 15 IEVKP-EDKVSDVKKNIETVQGS--DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 15 leV~~-~~TV~~LK~~I~~~~g~--~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
++++. ..||.+|++.|..++.. ........++..|++...+ +.-|++||.|.++
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEe
Confidence 44443 47999999999877531 0011233444556655433 3358899999886
No 172
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=62.65 E-value=8.3 Score=32.83 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.4
Q ss_pred EecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 51 KVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 51 KiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|-.+|+++|..++++-||+|.|.+..++..
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p~~~ 141 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPPNRR 141 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCcccC
Confidence 445889999999999999999999876544
No 173
>PF09722 DUF2384: Protein of unknown function (DUF2384); InterPro: IPR024467 This domain is found predominantly in proteobacterial proteins. Its function in unknown.
Probab=62.62 E-value=20 Score=24.96 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.6
Q ss_pred CCCchHHhhChHHHHHHHHHHH
Q 021760 273 GAGTLDFLRNSQQFQALRTMVQ 294 (308)
Q Consensus 273 ~~~~l~~Lr~~pqf~~lRq~vq 294 (308)
|.-|+++|++...+...+++|.
T Consensus 27 g~~Plel~~t~~G~~~V~~~L~ 48 (54)
T PF09722_consen 27 GRTPLELLRTEAGAERVLDYLD 48 (54)
T ss_pred CCCHHHHHcChHHHHHHHHHHH
Confidence 3458999999888888888774
No 174
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=62.18 E-value=15 Score=36.97 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=57.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE--EeCCEecCC---CCChhhhccCCCCEEEEEEec
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML--IHQGKVLKD---VTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL--Iy~GKiL~D---~~tL~dygIk~g~~I~v~v~k 76 (308)
+|.||..+|..|.-++..+.-+..+|..|....+ +.....-| -|--|+..| +++|.++.+.+...|+|+-++
T Consensus 316 rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~---i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 316 RLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQT---IGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred EEEEecCCccchhhcCCcchHHHHHHHHHHhccc---ccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 6889988999999889888888999999987777 55666655 588888743 479999999988777776544
Q ss_pred C
Q 021760 77 S 77 (308)
Q Consensus 77 ~ 77 (308)
+
T Consensus 393 r 393 (506)
T KOG2507|consen 393 R 393 (506)
T ss_pred C
Confidence 3
No 175
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.10 E-value=9.7 Score=36.03 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=29.3
Q ss_pred HHHHHhcCCccCHHHHHHHHHHh-cCChHHHHHHH-HhCC
Q 021760 177 QQILDMGGGSWDRETVIRALRAA-YNNPERAVEYL-YSGI 214 (308)
Q Consensus 177 ~~i~~MG~~~f~r~qv~~ALrAa-fnNpdRAvEYL-~~GI 214 (308)
+.+|+|| |+|.-+++||--. .-+-+-|++|| +.+.
T Consensus 5 ~~l~~mg---fps~k~e~al~~~~n~~~e~al~wl~~d~~ 41 (290)
T KOG2689|consen 5 QSLEEMG---FPSGKAEKALAVYGNRGIEQALDWLEMDHA 41 (290)
T ss_pred HHHHHhc---CchhhhhhHhhhhccccHHHHHHHHHhccc
Confidence 7899999 9999999999766 45678899999 6553
No 176
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.58 E-value=25 Score=33.40 Aligned_cols=70 Identities=9% Similarity=0.193 Sum_probs=50.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecC-C--CCChhhhccCCCCEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLK-D--VTTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~-D--~~tL~dygIk~g~~I~v 72 (308)
.|.||..+|+++...+....|+..|+..|.-.++.+ ..+-.+.--|--+.+. | .++|..+++..-.+|++
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~-~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDG-LDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCC-CCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 578998899999999999999999999999998833 2122222223345552 2 47899999988776654
No 177
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=60.08 E-value=32 Score=27.30 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=44.0
Q ss_pred EEEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHh--CCCCCCCC-CeEEEeCCE--ecCCCCChhhhc-----cCCCCEE
Q 021760 2 KVFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQ--GSDVYPAS-QQMLIHQGK--VLKDVTTLEENK-----VAENSFV 70 (308)
Q Consensus 2 ~I~Vktl-~gk~~~leV~~~~TV~~LK~~I~~~~--g~~~ip~~-~qkLIy~GK--iL~D~~tL~dyg-----Ik~g~~I 70 (308)
.|.|... .+..+.+.++.+.|+.+|...+-.+. +....... +..|--.|+ .|..+..|.+|. ++.+..+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 4566655 45689999999999999999887662 21101111 345544553 366777888773 5666677
Q ss_pred EEEEec
Q 021760 71 VVMLTK 76 (308)
Q Consensus 71 ~v~v~k 76 (308)
+|++..
T Consensus 98 ~L~Lv~ 103 (106)
T PF00794_consen 98 HLVLVH 103 (106)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777654
No 178
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=59.64 E-value=7.9 Score=29.95 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=15.5
Q ss_pred hChHHHHHHHHHHHhChhhHHHHHhc
Q 021760 281 RNSQQFQALRTMVQANPQILQQWALI 306 (308)
Q Consensus 281 r~~pqf~~lRq~vqqnP~~L~~~L~~ 306 (308)
.++| .++|+++++||+|.-.++|.
T Consensus 43 ~~~p--~~ar~lL~~nPqLa~Al~qa 66 (84)
T PF14327_consen 43 QQNP--EQARQLLQQNPQLAYALFQA 66 (84)
T ss_dssp C------HHHHHHHS-THHHHHHHHH
T ss_pred HhCH--HHHHHHHHHCcHHHHHHHHH
Confidence 3455 68899999999988888764
No 179
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=57.99 E-value=11 Score=33.73 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcCC
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNN 202 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnN 202 (308)
..++.+..|+.+| |.+.++.+|++....+
T Consensus 146 ~~~e~~~aL~~LG---y~~~e~~~ai~~~~~~ 174 (191)
T TIGR00084 146 ARDELFEALVSLG---YKPQEIQQALKKIKNK 174 (191)
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHHhhc
Confidence 3578999999999 9999999999988753
No 180
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=55.56 E-value=21 Score=28.15 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=32.7
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CC------EecCCC---CCh--hhhccCCCCEEEEE
Q 021760 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QG------KVLKDV---TTL--EENKVAENSFVVVM 73 (308)
Q Consensus 15 leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy-~G------KiL~D~---~tL--~dygIk~g~~I~v~ 73 (308)
++++...||.+|-+.|...+. ..+-+|+. +| -+|-++ ..+ .++-+++||.|.++
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL-----EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc-----hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 344456799999999987753 23333332 22 223222 223 35789999999887
No 181
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=54.10 E-value=63 Score=25.31 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=43.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCCCC--C-CeEEEeCC--EecCCCCChhhhccCCCCEEEEEEe
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVYPA--S-QQMLIHQG--KVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~-g~~~ip~--~-~qkLIy~G--KiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
..+-|+..+|+.++-++++... |.. +++ . ..++.++| ..|..+.++.+-||+.-+.|.++..
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrR-V~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRR-VAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTS-S---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhccee-cCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4568999999999999997543 433 322 2 45677888 8999999999999999999988764
No 182
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=52.67 E-value=31 Score=28.54 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 173 e~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
++-|.-+++- | -+|+.+++||+.+.++.-.|+-||.
T Consensus 79 ~eDI~lV~eq~g---vs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 79 EDDIELVMKQCN---VSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred HHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 4678888885 7 8999999999999999999999985
No 183
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=52.52 E-value=51 Score=31.84 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=46.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHh----CCC--------CCCCCCeEEEeCCEecCCCCChhhhc---cCCCCEEEEEEecC
Q 021760 14 EIEVKPEDKVSDVKKNIETVQ----GSD--------VYPASQQMLIHQGKVLKDVTTLEENK---VAENSFVVVMLTKS 77 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~----g~~--------~ip~~~qkLIy~GKiL~D~~tL~dyg---Ik~g~~I~v~v~k~ 77 (308)
.|....-..|+.|+..|.++. ... ..+.+.+.|+++|++|..+.||.... -+.++-|+|..|.+
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 344445567899999998887 100 03566789999999999999987764 36677777777654
No 184
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=52.41 E-value=35 Score=26.25 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=41.0
Q ss_pred EEEEeCC-CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 3 VFVKTLK-GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 3 I~Vktl~-gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy--~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
+.|++.+ .+++-|-. .++.+|+.+..+.++ ++.+..+|+. .|.+++|+.-+.. +. .+++.|++.+
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~---~~~~~~~lvL~eDGT~VddEeyF~t--Lp-~nT~lm~L~~ 72 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQ---LPEEPVRLVLEEDGTEVDDEEYFQT--LP-DNTVLMLLEK 72 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT----SSSTCEEEETTTTCBESSCHHHCC--SS-SSEEEEEEES
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhC---CCCcCcEEEEeCCCcEEccHHHHhh--CC-CCCEEEEECC
Confidence 3455544 23455555 489999999999999 7767777654 7888887754433 33 3455555443
No 185
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=52.34 E-value=55 Score=26.08 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=32.2
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 021760 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (308)
Q Consensus 5 Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy 48 (308)
++...|++..+.|+.+.+..+|+.++.+..+ +... +.|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~---~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFG---AGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhC---CCCc-eEEEE
Confidence 4556788888999999999999999999998 5544 55544
No 186
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=51.99 E-value=16 Score=32.98 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHHHhc
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALRAAY 200 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALrAaf 200 (308)
..+++.+.-|+.+| |.|.++.+|++...
T Consensus 153 ~~~~ea~~AL~~LG---y~~~ea~~av~~~~ 180 (203)
T PRK14602 153 SVFRDALAGLANLG---YGEEEARPVLKEVL 180 (203)
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHHh
Confidence 34688999999999 99999999999885
No 187
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=49.77 E-value=17 Score=24.05 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.0
Q ss_pred cCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 187 WDRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 187 f~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
|||+-+..||+..-+|..+|.+.| ||+
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L--gis 31 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL--GIS 31 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH--TS-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH--CCC
Confidence 789999999999999999999998 554
No 188
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=49.47 E-value=33 Score=33.10 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
..++.++-|.+-| ++.+++..+++.+-++|.+|.+|+..+
T Consensus 173 ~~~~~~~~L~~~~---~~~~~a~~~~~l~~G~p~~A~~~~~~~ 212 (319)
T PRK08769 173 PAHEALAWLLAQG---VSERAAQEALDAARGHPGLAAQWLRED 212 (319)
T ss_pred CHHHHHHHHHHcC---CChHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 3467778888889 999999999999999999999999654
No 189
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=49.35 E-value=35 Score=29.56 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=30.5
Q ss_pred EEEEEeCC-CCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCC
Q 021760 12 HFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67 (308)
Q Consensus 12 ~~~leV~~-~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g 67 (308)
.+.|+++. .+.+..+++...+.+. ++.+ |+-|+.+....|+.|| +|.|
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lp---f~y~----i~~G~f~r~~~TvtDY-~KyG 124 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLP---FGYD----IKEGKFIRTKPTVTDY-AKYG 124 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCC---CceE----eeeeEEeccCCchhhh-hhcC
Confidence 35577776 5556666654444432 2222 4679999999999998 4444
No 190
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=48.76 E-value=22 Score=31.68 Aligned_cols=28 Identities=11% Similarity=0.409 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcC
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYN 201 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafn 201 (308)
.+++.+.-|+.+| |.+.++.+|++....
T Consensus 142 ~~~e~~~AL~~LG---y~~~ea~~av~~~~~ 169 (188)
T PRK14606 142 IYHESLEALVSLG---YPEKQAREAVKHVYR 169 (188)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHhh
Confidence 4688999999999 999999999998864
No 191
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=48.36 E-value=54 Score=24.93 Aligned_cols=33 Identities=21% Similarity=0.070 Sum_probs=22.2
Q ss_pred EEEEeCCCc-EEEEEeCC-CCcHHHHHHHHHHHhC
Q 021760 3 VFVKTLKGT-HFEIEVKP-EDKVSDVKKNIETVQG 35 (308)
Q Consensus 3 I~Vktl~gk-~~~leV~~-~~TV~~LK~~I~~~~g 35 (308)
|+.|....+ ...|.++. ..+|.+||..|..+.+
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~ 35 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEKKK 35 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHHhC
Confidence 344544444 34577774 5699999999977766
No 192
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=46.97 E-value=56 Score=23.29 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=39.5
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
|+|.+.+|+... +....|+.++=..|....++ .-..-..+|+..+-+ +-|++||+|.++
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~-----~~~~A~Vng~~vdl~-----~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAK-----RAVAAKVNGQLVDLD-----HPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHH-----CEEEEEETTEEEETT-----SBB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHh-----heeEEEEcCEECCCC-----CCcCCCCEEEEE
Confidence 456667887755 67778999999999988761 222335688766543 356677877764
No 193
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=46.96 E-value=40 Score=29.13 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=28.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhh
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dy 62 (308)
+.|+++..+.+.++++...+.+- ++. -+.-||.+.+..|+.||
T Consensus 76 I~le~~~~~~i~~I~eiC~e~~p---F~y----~i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 76 IILELEDEDIVEEIEEICKEMLP---FGY----EVRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEecCHHHHHHHHHHHHhhCC---Cce----EeeeeeEeecCCchhhh
Confidence 55666666667766665444432 221 25679999999999998
No 194
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=46.24 E-value=45 Score=27.49 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=31.0
Q ss_pred HHHHHHHHHH--hcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 172 LEATVQQILD--MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 172 ~e~~v~~i~~--MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
+|+.+++|.. .+ |.|++++.+|.+-+ |..+|||++|--
T Consensus 31 l~~Ia~~i~~~~s~---~t~~di~~vl~~~~---~~~~~~l~~G~s 70 (124)
T PF14848_consen 31 LEDIAEEIAKEGST---LTRADIEAVLNALK---DEMIEALMNGYS 70 (124)
T ss_pred HHHHHHHHHHhCCC---CCHHHHHHHHHHHH---HHHHHHHhCCCE
Confidence 5677788874 78 99999999998776 667899999943
No 195
>PRK01777 hypothetical protein; Validated
Probab=46.16 E-value=94 Score=24.64 Aligned_cols=69 Identities=7% Similarity=-0.020 Sum_probs=39.8
Q ss_pred CEEEEEeC-C--CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTL-K--GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl-~--gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|.|..- . ...+.+++....||.++-+...-......+.....++.-+||...-+ .-+++||.|-++-
T Consensus 4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d-----~~L~dGDRVeIyr 75 (95)
T PRK01777 4 IRVEVVYALPERQYLQRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLT-----DVLRDGDRVEIYR 75 (95)
T ss_pred eEEEEEEECCCceEEEEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCC-----CcCCCCCEEEEec
Confidence 45666542 2 23466788999999998765421111000111223555677766543 3578899999874
No 196
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=45.43 E-value=67 Score=26.02 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=36.9
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---CCeEEEeCC--------EecCCCCChhhh
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---SQQMLIHQG--------KVLKDVTTLEEN 62 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~---~~qkLIy~G--------KiL~D~~tL~dy 62 (308)
|+|-..+|.+..|+|....+-.++|.++-+++| +.. .....+.+| +.|.|...+.=|
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg---~~~~~~~~~~~v~d~~~~~~~~~~~LsD~EL~~IC 70 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFG---LPEHPRNYCFYVLDGESPDPSNCRPLSDVELVTIC 70 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHT---SS--CCCEEEEEE-S-----SSEEEE-SSHHHHHH
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcC---CccccccceEEEecccccccccceECcHHHHHHHH
Confidence 566777999999999999999999999999999 443 334445566 455555555444
No 197
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.41 E-value=1.3e+02 Score=23.96 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCcEEEEEeC--CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEe------c---CCCCChhh--hccCCCCEEEEEEe
Q 021760 9 KGTHFEIEVK--PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV------L---KDVTTLEE--NKVAENSFVVVMLT 75 (308)
Q Consensus 9 ~gk~~~leV~--~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKi------L---~D~~tL~d--ygIk~g~~I~v~v~ 75 (308)
+++.++|.++ ...+|..|-..+..... -|...--++.+|.+ | .|-..++. |.+++||.|+++-.
T Consensus 16 nqR~~el~~~~~e~~~vg~liD~~~~~i~---~p~~~sifie~g~lrpGiI~LINd~DWeLleke~y~ledgDiIvfist 92 (96)
T COG5131 16 NQREIELTREEVEGSSVGTLIDALRYFIY---APTRDSIFIEHGELRPGIICLINDMDWELLEKERYPLEDGDIIVFIST 92 (96)
T ss_pred cceeeEEEEcccCCcchhhHHHHHHHHHh---CCccceeeecCCCCcccEEEEEcCccHhhhhcccccCCCCCEEEEEec
Confidence 3454555544 33467777666655322 22222233444432 2 23345655 99999999988754
No 198
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=44.95 E-value=22 Score=32.14 Aligned_cols=34 Identities=21% Similarity=0.563 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcCC-hHHHH
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNN-PERAV 207 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnN-pdRAv 207 (308)
..+++|.-|+.|| |.+.|+.+|+....-+ ++--+
T Consensus 155 ~~~~~v~AL~~LG---y~~~e~~~av~~v~~~~~~~~~ 189 (201)
T COG0632 155 ALEEAVEALVALG---YKEKEIKKAVKKVLKENPDADV 189 (201)
T ss_pred hhhHHHHHHHHcC---CCHHHHHHHHHHHHhcCCCCCH
Confidence 3456699999999 9999999999988765 44333
No 199
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=44.51 E-value=88 Score=23.81 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=37.3
Q ss_pred EeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC--EecC
Q 021760 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG--KVLK 54 (308)
Q Consensus 6 ktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G--KiL~ 54 (308)
-..+|+.-.+.+.+..||.++-.++.++.| +..+...++.-| |.|.
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~kllekRg---l~~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCEKRG---INYAAVDLFLVGGDKPLV 52 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHHHcC---CChhHEEEEEecCCcccc
Confidence 345788888999999999999999999999 777777776555 4553
No 200
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=44.37 E-value=5.7 Score=37.23 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=46.2
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEE
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
+.|..+.++++.+++|.+.+..+.+..+ +.....||++.+ .|++...|.++=.++..+.++
T Consensus 10 ~~gn~i~ls~~~~~ri~D~~~~l~K~~~---vss~~~kll~~~-llk~iahl~~p~mkEh~f~vt 70 (278)
T KOG4842|consen 10 KSGNAIYLSMAGSQRIPDKNPHLQKVAV---VSSKPNKLLALN-LLKEIAHLVSPLMKEHHFKVT 70 (278)
T ss_pred ecCcEEEEEeccccccCCCCcccceeee---eccchHHHHhhh-hhhhhhhhhhhhhccccceeE
Confidence 3677899999999999999999999988 778888888877 455555555555555444443
No 201
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=44.34 E-value=23 Score=31.74 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNN 202 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnN 202 (308)
.++.+.-|+.+| |.|.++.+|++....+
T Consensus 149 ~~e~~~aL~~LG---y~~~ea~~ai~~i~~~ 176 (195)
T PRK14604 149 DRELSEILISLG---YSAAEAAAAIAALPSD 176 (195)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHhhc
Confidence 578999999999 9999999999987543
No 202
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=44.18 E-value=81 Score=25.99 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=40.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEec--CCCCChhhh--ccCCCCEEEEEEe
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL--KDVTTLEEN--KVAENSFVVVMLT 75 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL--~D~~tL~dy--gIk~g~~I~v~v~ 75 (308)
-...|++++|+..+-..|.+..+ ++..++-++|=..-. ..|..+.++ +..-++.|+|...
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lk---l~as~slflYVN~sFAPsPDq~v~~Ly~cf~~d~~Lvl~Yc 110 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLK---LQASDSLFLYVNNSFAPSPDQIVGNLYECFGTDGKLVLNYC 110 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhC---CcccCeEEEEEcCccCCCchhHHHHHHHhcCCCCEEEEEEe
Confidence 45678999999999999999999 888888888755444 345554443 1223344554433
No 203
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=44.16 E-value=27 Score=31.11 Aligned_cols=28 Identities=7% Similarity=0.329 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcC
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYN 201 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafn 201 (308)
..++.+.-|+.+| |.|.++.+|++....
T Consensus 144 ~~~e~~~aL~~LG---y~~~ea~~al~~v~~ 171 (186)
T PRK14600 144 INDDALAALISLG---YEKTKAFNAIQKIKP 171 (186)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHhhc
Confidence 3678999999999 999999999998753
No 204
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=43.79 E-value=14 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHhChhhHHHHHhc
Q 021760 282 NSQQFQALRTMVQANPQILQQWALI 306 (308)
Q Consensus 282 ~~pqf~~lRq~vqqnP~~L~~~L~~ 306 (308)
..|.|..|+.|-+.||+.|..+-+.
T Consensus 2 ~lp~FD~L~~LA~~dPe~fe~lr~~ 26 (83)
T PF11333_consen 2 ELPDFDELKELAQNDPEAFEQLRQE 26 (83)
T ss_pred CCCCHHHHHHHHHhCHHHHHHHHHH
Confidence 3578999999999999999887653
No 205
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=42.69 E-value=29 Score=30.85 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhc
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAY 200 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAaf 200 (308)
..++.+.-|+.+| |.|.++.+|++...
T Consensus 141 ~~~ea~~AL~~LG---y~~~ea~~a~~~~~ 167 (183)
T PRK14601 141 DKSEALAALLTLG---FKQEKIIKVLASCQ 167 (183)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHhcc
Confidence 3588999999999 99999999999763
No 206
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=42.66 E-value=84 Score=23.96 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 21 DKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
.+..+|+.|..+.++ ++....+|+ -.|..++|+.-+..+ .+ +++.|++.
T Consensus 19 ~sL~eL~~K~~~~l~---l~~~~~~l~L~eDGT~VddEeyF~tL--p~-nt~l~~L~ 69 (74)
T smart00266 19 SSLEELLSKVCDKLA---LPDSPVTLVLEEDGTIVDDEEYFQTL--PD-NTELMALE 69 (74)
T ss_pred CCHHHHHHHHHHHhC---CCCCCcEEEEecCCcEEccHHHHhcC--CC-CcEEEEEc
Confidence 379999999999999 775555554 489999887655543 33 44444443
No 207
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=41.67 E-value=48 Score=28.79 Aligned_cols=60 Identities=28% Similarity=0.320 Sum_probs=42.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
.+++|+.+++.|-|.++.. .+-|||. |.+..| .. ||-|.- .++.++-+|+..|++-.+-+
T Consensus 47 nLfLkdkK~q~~lv~~~e~-~~vDLk~-ih~~IG-----~~--RlsFg~----~E~l~E~LGv~pG~VT~Fgl 106 (164)
T COG3760 47 NLFLKDKKDQFFLVTVDED-AVVDLKS-IHETIG-----AA--RLSFGS----PERLMEYLGVIPGSVTVFGL 106 (164)
T ss_pred eeEeecCCCCEEEEEeccc-ceecHHH-HHHHhc-----ee--eeecCC----HHHHHHHhCCCcCceeEeee
Confidence 4789999998888888755 5668884 777777 23 776654 35566777888888655543
No 208
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=40.81 E-value=53 Score=31.76 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=30.8
Q ss_pred HHHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 173 e~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
+...+-|.+- | .+.+++..++|.+-++|.||.+||-.|
T Consensus 170 ~~~~~~L~~~~~---~~~~~a~~~~~la~G~~~~Al~l~~~~ 208 (334)
T PRK07993 170 QYALTWLSREVT---MSQDALLAALRLSAGAPGAALALLQPE 208 (334)
T ss_pred HHHHHHHHHccC---CCHHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 4555556664 7 899999999999999999999998654
No 209
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=40.76 E-value=47 Score=31.82 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 174 ~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
.+|.+|-++-| =.=-+|.+||-.+-+|-|.|||||-
T Consensus 7 ~~VKeLRe~Tg--AGMmdCKkAL~E~~Gd~EkAie~LR 42 (296)
T COG0264 7 ALVKELREKTG--AGMMDCKKALEEANGDIEKAIEWLR 42 (296)
T ss_pred HHHHHHHHHhC--CcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57888888732 2346899999999999999999996
No 210
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=40.64 E-value=44 Score=25.79 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=24.4
Q ss_pred HHHHHhCCCCCCCCCeEEE---eCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 29 NIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 29 ~I~~~~g~~~ip~~~qkLI---y~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
.|.+++. +.++...|+ .++..|+-+++|.+|||++ |+.+-+++
T Consensus 2 ~IC~KCE---fdp~htvLLrD~~s~e~LdLsKSLndlGirE---LYA~D~~~ 47 (79)
T PF09469_consen 2 AICEKCE---FDPEHTVLLRDYQSGEELDLSKSLNDLGIRE---LYAWDTSR 47 (79)
T ss_dssp HHHHHTT-----TTSEEEES-SS---B--TTS-HHHHT-SE---EEEEE---
T ss_pred ccccccc---cCcceEEEeecCCCCCcccccccHHHhhHHH---HHhhcccc
Confidence 4677755 778888776 3567899999999999997 87776653
No 211
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=40.42 E-value=33 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhc
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAY 200 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAaf 200 (308)
.+++.+.-|+.+| |.+.++.+|++...
T Consensus 151 ~~~ea~~AL~~LG---y~~~ea~~al~~i~ 177 (197)
T PRK14603 151 AAEDAVLALLALG---FREAQVRSVVAELL 177 (197)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 4688999999999 99999999999874
No 212
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=40.37 E-value=1e+02 Score=24.61 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=43.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCCEe---------cCCCCChhhhccCCCCEEEE
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQGKV---------LKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL-Iy~GKi---------L~D~~tL~dygIk~g~~I~v 72 (308)
..++.+.|+++.|=.++|+.|+..+| +.+..... +..|+. +..+..-...-+..|..|.+
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~---VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFG---VKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 46899999999999999999999999 77777643 455531 44555555556666666554
No 213
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=40.15 E-value=59 Score=25.38 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=34.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCCEecC
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQGKVLK 54 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL-Iy~GKiL~ 54 (308)
..+.+.|+...|=.++|+.|+..+| +.+...+. ++.||.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~---V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYG---VKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHT---SEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcC---CCeeEEEEeEeCCCceE
Confidence 5789999999999999999999999 88877754 67887544
No 214
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=39.39 E-value=13 Score=41.09 Aligned_cols=69 Identities=7% Similarity=-0.130 Sum_probs=54.8
Q ss_pred EeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 6 ktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
+++....|...+....++...|.+|....| |+...++|++-|..++++..+..|+.......+..++.+
T Consensus 330 ~~l~~p~~~~~~~~~~~~~~~~p~~~~qtg---ipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~asp 398 (1143)
T KOG4248|consen 330 CNLACPPPRHLHVVRPMSHYTTPMVLQQTG---IPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASP 398 (1143)
T ss_pred hcccCCCCceeeecchhhhccCceeeeccc---ccccccceeeecccccCCCCCCccccccCCCCCccccCc
Confidence 445555566555666678888999999999 999999999999999999999999888777766655443
No 215
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=39.27 E-value=1.8e+02 Score=23.36 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=25.5
Q ss_pred EEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhC
Q 021760 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQG 35 (308)
Q Consensus 4 ~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g 35 (308)
.|-..++...++.+..+.||.+|-..+.++..
T Consensus 6 RIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~ 37 (97)
T cd01775 6 RVFRSDGTFTTLSCPLNTTVSELIPQLAKKFY 37 (97)
T ss_pred EEEecCCcEEEEEcCCcCcHHHHHHHHHHhhc
Confidence 33334565567899999999999999999987
No 216
>PF14053 DUF4248: Domain of unknown function (DUF4248)
Probab=39.21 E-value=30 Score=25.85 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhChhhHHHHHh
Q 021760 285 QFQALRTMVQANPQILQQWAL 305 (308)
Q Consensus 285 qf~~lRq~vqqnP~~L~~~L~ 305 (308)
-...||++|..||+|+..|..
T Consensus 24 A~r~L~rwI~~~~~L~~~L~~ 44 (69)
T PF14053_consen 24 AVRKLRRWIRRNPELLEELEA 44 (69)
T ss_pred HHHHHHHHHHHCHHHHHHHHH
Confidence 377999999999999999875
No 217
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.11 E-value=60 Score=34.97 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=46.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--e--CCEec--CCCCChhhhccCCCCEEEEEEecC
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H--QGKVL--KDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y--~GKiL--~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
-+.|.|+...++..+|+.|+...+ ++.+..||. | +|..+ .++.+|..+ -++++|.+-+-+.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~---V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~ 944 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLE---VDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAP 944 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhC---cChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCc
Confidence 467999999999999999999999 889999886 2 44444 456677764 4677777765443
No 218
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=38.82 E-value=79 Score=24.38 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCe--EEEeCCEecCCCCChhhhccCCCCEEEE
Q 021760 21 DKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~~~q--kLIy~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
.+..+|+.|..+.++ ++.... .|.-.|.+++|+.-+.. +.++..+++
T Consensus 21 ~sL~EL~~K~~~~l~---~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~ 69 (78)
T cd06539 21 SSLQELISKTLDALV---ITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMV 69 (78)
T ss_pred cCHHHHHHHHHHHhC---CCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEE
Confidence 379999999999998 765444 44568999988765554 334444443
No 219
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=37.61 E-value=63 Score=29.88 Aligned_cols=43 Identities=7% Similarity=0.089 Sum_probs=31.4
Q ss_pred EEEEEeCC---CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE
Q 021760 2 KVFVKTLK---GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI 47 (308)
Q Consensus 2 ~I~Vktl~---gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI 47 (308)
.|+|+... +..|++.++..+|-.+|-++|++..+ +.++.+||.
T Consensus 178 ~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~---~dP~~lr~~ 223 (249)
T PF12436_consen 178 EVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLN---VDPEHLRFF 223 (249)
T ss_dssp EEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHT---S-GGGEEEE
T ss_pred EEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEE
Confidence 45666532 34799999999999999999999999 779999885
No 220
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=36.98 E-value=55 Score=29.38 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=35.7
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
.+.+++++-+.+.| |++++.++..+.-+.|+|. ++.++.-
T Consensus 80 ~e~~el~~iy~~~G---l~~~~a~~i~~~l~~~~~~-~~~m~~e 119 (213)
T PF01988_consen 80 EEKEELVEIYRAKG---LSEEDAEEIAEELSKDKDA-LDFMMRE 119 (213)
T ss_pred hHHHHHHHHHHHCC---CCHHHHHHHHHHHHhCchH-HHHHHhh
Confidence 45677888899999 9999999999999999999 9999854
No 221
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=36.24 E-value=44 Score=26.07 Aligned_cols=30 Identities=30% Similarity=0.539 Sum_probs=24.3
Q ss_pred cccCCcHHHHHHHHHHhcCCcc-CHHHHHH-HHH
Q 021760 166 LVAGSNLEATVQQILDMGGGSW-DRETVIR-ALR 197 (308)
Q Consensus 166 l~~g~~~e~~v~~i~~MG~~~f-~r~qv~~-ALr 197 (308)
+-.+..+...|+++++.| -| .|++|+| |||
T Consensus 7 V~lp~~~~~~i~~lV~~G--~y~s~SeviR~alr 38 (89)
T COG3609 7 VRLPEQLVEFIDELVESG--RYKSRSEVIRAALR 38 (89)
T ss_pred EeCCHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 346788999999999997 55 8999988 455
No 222
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=34.99 E-value=24 Score=29.05 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=24.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHH
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNI 30 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I 30 (308)
|+|+|. .+++.+..++..+.|.++|.+++
T Consensus 1 mkI~i~-i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKIT-IGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEE-ETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEE-ECCEEEEEEECCCHHHHHHHHhC
Confidence 788988 45889999999998998888765
No 223
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=34.49 E-value=1e+02 Score=24.16 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=33.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCCEe
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQGKV 52 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL-Iy~GKi 52 (308)
...+.+.|+...|=.++|+.|+..+| +.+...+- ++.||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~---VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFG---VKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceeEEEEEEeCCce
Confidence 46899999999999999999999999 87877754 566654
No 224
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.42 E-value=2.4e+02 Score=22.56 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEe------c-CC-CC-Ch--hhhccCCCCEEEEEEec
Q 021760 19 PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV------L-KD-VT-TL--EENKVAENSFVVVMLTK 76 (308)
Q Consensus 19 ~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKi------L-~D-~~-tL--~dygIk~g~~I~v~v~k 76 (308)
...||++|-..|....- ..-.+-+|++|.+ | +| |. .| ++|.+++||.|+++-+.
T Consensus 34 ~~~tvgdll~yi~~~~i----e~r~~lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~ivfiSTl 98 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYI----ETRDSLFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHIVFISTL 98 (101)
T ss_pred CcccHHHHHHHHHHHHh----cCCcceEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEEEEEEec
Confidence 44699999999987653 1223356666643 2 33 22 23 68999999999887553
No 225
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=34.41 E-value=78 Score=34.63 Aligned_cols=62 Identities=13% Similarity=0.305 Sum_probs=45.1
Q ss_pred CCcEEEEEeCC-CCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CCEecCCCCChhhhcc--CCCCEEEEE
Q 021760 9 KGTHFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEENKV--AENSFVVVM 73 (308)
Q Consensus 9 ~gk~~~leV~~-~~TV~~LK~~I~~~~g~~~ip~~~qkLIy-~GKiL~D~~tL~dygI--k~g~~I~v~ 73 (308)
.|+.++++.+. ..|+.+||..|..+.| +....+.|+- +|..+.-++.|..|.- .+-+-|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~---~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVG---HAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhc---hhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 46777777664 5699999999999999 7677777764 5677888888888862 233445554
No 226
>PF03333 PapB: Adhesin biosynthesis transcription regulatory protein; InterPro: IPR004356 P pili, or fimbriae, are ~68A in diameter and 1 micron in length, the bulk of which is a fibre composed of the main structural protein PapA []. At its tip, the pilus is terminated by a fibrillum consisting of repeating units of the PapE protein. This, in turn, is topped by the adhesins, PapF and PapG, both of which are needed for receptor binding. The tip fibrillum is anchored to the main PapA fibre by the PapK pilus-adaptor protein. PapH, an outer membrane protein, then anchors the entire rod in the bacterial envelope []. A cytoplasmic chaperone (PapD) assists in assembling the monomers of the macromolecule in the membrane. All of the functional pap genes are arranged in a cluster (operon) on the Escherichia coli genome. It is believed that selective pressure exerted by the host's urinal and intestinal tract isoreceptors forced the spread of this operon to other strains via lateral transfer []. PapB, encoded within the cluster, acts as a transcriptional regulator of the functional pap genes and is located in the bacterial cytoplasm []. Its mechanism involves differential binding to separate sites in the cluster, suggesting that this protein is both an activator and repressor of pilus-adhesion transcription. The protein shares similarity with other E. coli fimbrial- adhesion transcription regulators, such as AfaA, DaaA and FanB. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 3M8J_A.
Probab=34.34 E-value=58 Score=25.79 Aligned_cols=41 Identities=32% Similarity=0.537 Sum_probs=25.8
Q ss_pred cccccCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 021760 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (308)
Q Consensus 164 s~l~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~ 216 (308)
..|+.|..-++-..-|+++. .---+.|+.||| +||..|++.
T Consensus 16 ~~L~pG~vs~e~F~lLl~ls--~IrS~kiI~AL~----------dyLV~G~sr 56 (91)
T PF03333_consen 16 GYLIPGKVSEEHFWLLLELS--SIRSEKIIAALR----------DYLVDGLSR 56 (91)
T ss_dssp C---TT-S-HHHHHHHHHHS------HHHHHHHH----------HHHTT---H
T ss_pred CccCCCCcCHHHHHHHHHHC--CCCcHHHHHHHH----------HHHHcCCcH
Confidence 45788999999999999995 156688999999 899999874
No 227
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=33.00 E-value=1.2e+02 Score=29.37 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=23.4
Q ss_pred EEeCC-CCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCE
Q 021760 15 IEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGK 51 (308)
Q Consensus 15 leV~~-~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GK 51 (308)
|.++. ..+|.+||..|-.+.... --.+-+-|+|+|.
T Consensus 18 I~FdGTGl~vfdlKrEII~q~Klg-~g~DFdLl~yn~~ 54 (427)
T COG5222 18 ISFDGTGLPVFDLKREIINQRKLG-SGKDFDLLFYNGE 54 (427)
T ss_pred eEeccCCccHHHHHHHHHHhhhcc-CCccceEEEecCC
Confidence 55553 579999999985443310 2245677889984
No 228
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=32.95 E-value=49 Score=31.35 Aligned_cols=38 Identities=34% Similarity=0.528 Sum_probs=29.2
Q ss_pred HHHHhcCCccCHHHHHHHHHH-------------------hcCChHHHHHHHHhCCCCC
Q 021760 178 QILDMGGGSWDRETVIRALRA-------------------AYNNPERAVEYLYSGIPEQ 217 (308)
Q Consensus 178 ~i~~MG~~~f~r~qv~~ALrA-------------------afnNpdRAvEYL~~GIP~~ 217 (308)
++.=+| .++++++.+.|+. -||+|....+||-.|+|--
T Consensus 208 ~V~f~G--~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI 264 (333)
T PRK09814 208 NISYKG--WFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVI 264 (333)
T ss_pred CeEEec--CCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEE
Confidence 333455 2388888888876 3899999999999999954
No 229
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=32.57 E-value=1.1e+02 Score=23.64 Aligned_cols=38 Identities=11% Similarity=0.221 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecCCCCChhh
Q 021760 21 DKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKDVTTLEE 61 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~D~~tL~d 61 (308)
.+..+|+.|..+.++ ++....+|+ -.|..++|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~---l~~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 21 SSLEELLSKACEKLK---LPSAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCHHHHHHHHHHHcC---CCCCCeEEEEeCCCcEEccHHHHhc
Confidence 379999999999999 754555554 58988988765554
No 230
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=32.46 E-value=29 Score=27.84 Aligned_cols=21 Identities=29% Similarity=0.733 Sum_probs=13.2
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC
Q 021760 194 RALRAAYNNPERAVEYLYSG-IPEQ 217 (308)
Q Consensus 194 ~ALrAafnNpdRAvEYL~~G-IP~~ 217 (308)
..+|.++ |+|++||-+| ||++
T Consensus 75 ~s~k~al---~~A~~Fl~~~~vP~~ 96 (96)
T PF08169_consen 75 SSLKPAL---DKASTFLKTGVVPDN 96 (96)
T ss_dssp HHH-HHH---HHHHHHHHS----TT
T ss_pred chhhHHH---HHHHHHHhcCCCCCC
Confidence 4667665 8999999999 8864
No 231
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=32.30 E-value=57 Score=21.82 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.7
Q ss_pred cCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 187 WDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 187 f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
..|+.++..|+..-.|.-+|+|.++
T Consensus 15 ~kr~~Le~iL~~C~GDvv~AIE~~l 39 (39)
T PF03474_consen 15 QKRSVLELILQRCNGDVVQAIEQFL 39 (39)
T ss_pred CChHHHHHHHHHcCCcHHHHHHHhC
Confidence 4799999999999999999999874
No 232
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=31.89 E-value=1.7e+02 Score=20.56 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=29.8
Q ss_pred HHHHHHHHH--hcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 173 EATVQQILD--MGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 173 e~~v~~i~~--MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
|..|.+... -| -.|+-++|-|+-..-|.+-||.-||+
T Consensus 10 edlI~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T PF11547_consen 10 EDLINQAQVVLQG---KSRNVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHHSTT---S-HHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcHHHHHHHHHHhcccHHHHHHHHhc
Confidence 567776544 48 89999999999999999999999986
No 233
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=30.95 E-value=1.8e+02 Score=22.63 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=38.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC-----EecCCCCChhhh
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-----KVLKDVTTLEEN 62 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G-----KiL~D~~tL~dy 62 (308)
+.+|+ ..|.+-.+.+...-|-..|+++|...+. ++.+..-|.|-. --|.|+.-|.++
T Consensus 2 ~fKv~-~~g~~RRf~~~~~pt~~~L~~kl~~Lf~---lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 2 QFKSS-FLGDTRRIVFPDIPTWEALASKLENLYN---LPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eEEEE-eCCceEEEecCCCccHHHHHHHHHHHhC---CChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 34555 4455555666667789999999999999 888777777722 124555555554
No 234
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=29.77 E-value=38 Score=24.24 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=22.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHH
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIET 32 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~ 32 (308)
|.|++++.+|+.|.++.+--.--.-||..|..
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 78999999999999986543344445666654
No 235
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=29.30 E-value=64 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=17.9
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHh
Q 021760 176 VQQILDMGGGSWDRETVIRALRAA 199 (308)
Q Consensus 176 v~~i~~MG~~~f~r~qv~~ALrAa 199 (308)
-+.||+|| |...+..+=+|-|
T Consensus 6 k~dLi~lG---f~~~tA~~IIrqA 26 (59)
T PF11372_consen 6 KKDLIELG---FSESTARDIIRQA 26 (59)
T ss_pred HHHHHHcC---CCHHHHHHHHHHH
Confidence 35799999 9999999888865
No 236
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=28.32 E-value=3.4e+02 Score=22.34 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=27.9
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHhC
Q 021760 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQG 35 (308)
Q Consensus 1 M~I~Vktl~gk--~~~leV~~~~TV~~LK~~I~~~~g 35 (308)
|+.++...+++ +-.|.|+.++|+.++.+.+-+++.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk 60 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFR 60 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhc
Confidence 66777766654 345899999999999999988887
No 237
>KOG4261 consensus Talin [Cytoskeleton]
Probab=28.32 E-value=1.2e+02 Score=32.90 Aligned_cols=63 Identities=19% Similarity=0.096 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe------CCEecCCCCChhhhccCCCCEEEE
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy------~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
+-.-++.++|+.+|.|--+.|.+++-....-+....|+. +|-.|+..++|.+|-+.++++|-.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey 80 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEY 80 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccch
Confidence 445678899999999998888887652212244555543 567789999999999999998864
No 238
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=28.18 E-value=1e+02 Score=29.74 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
..+..++-|.+.| ++. ...+|+.+-++|.+|.+|+-.|
T Consensus 168 ~~~~~~~~L~~~~---~~~--~~~~l~l~~G~p~~A~~~~~~~ 205 (319)
T PRK06090 168 STAQAMQWLKGQG---ITV--PAYALKLNMGSPLKTLAMMKEG 205 (319)
T ss_pred CHHHHHHHHHHcC---Cch--HHHHHHHcCCCHHHHHHHhCCC
Confidence 3567788888899 773 4578999999999999998765
No 239
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=28.09 E-value=1.2e+02 Score=23.87 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=34.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ 44 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~q 44 (308)
.|.|-..+|..+.|+|..+++..+|-+.+..+.| ++.+.+
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~---L~~e~~ 42 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAG---MDSYTQ 42 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhC---CCHHHH
Confidence 4666667899999999999999999999999999 776654
No 240
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=28.08 E-value=1.4e+02 Score=24.18 Aligned_cols=63 Identities=8% Similarity=0.067 Sum_probs=45.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCC-ChhhhccCCCCEEEEEEec
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~-tL~dygIk~g~~I~v~v~k 76 (308)
..|.-..-.|+.++-+.+.+..+.+.+.+=..-.|+.|+.|.... .|-.+++..+ ++.+-+|-
T Consensus 23 ~~l~~~~~~t~~~~l~~l~~~l~lh~VevIg~E~I~A~~ll~~~~~~L~H~~~~~~-~l~l~vrs 86 (104)
T PF14807_consen 23 QNLPSSSQRTLPEFLQRLQQKLRLHVVEVIGNEGIFACQLLNSSPVCLLHCRVNAG-TLDLWVRS 86 (104)
T ss_pred EeccccCcCCHHHHHHHHHHhcCceEEEEeCccceeeeeccCCCCeEEEEEEecCC-eEEEEEEc
Confidence 334334557888888888887774334444557899999998877 8888898777 88887764
No 241
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=27.73 E-value=1.4e+02 Score=23.12 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC--CeEE--EeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 21 DKVSDVKKNIETVQGSDVYPAS--QQML--IHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~~--~qkL--Iy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
.+..+|+.|..+.++ ++.. ..+| .-.|.+++|+.-+..+ .++ ++.|++.
T Consensus 21 ~sL~eL~~K~~~~l~---l~~~~~~~~lvL~eDGT~VddEeyF~tL--p~n-T~l~~L~ 73 (80)
T cd06536 21 SSLEELRIKACESLG---FDSSSAPITLVLAEDGTIVEDEDYFLCL--PPN-TKFVLLA 73 (80)
T ss_pred CCHHHHHHHHHHHhC---CCCCCCceEEEEecCCcEEccHHHHhhC--CCC-cEEEEEC
Confidence 379999999999998 7632 2444 4589999887655543 333 4444443
No 242
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=27.70 E-value=1.4e+02 Score=23.18 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHhCCCCCC-CCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 21 DKVSDVKKNIETVQGSDVYP-ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip-~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
.+..+|+.|..+..+ ++ ...+.|.-.|.+++|+.-+.. +.++..++++
T Consensus 21 ~sL~EL~~K~~~~L~---~~~~~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~L 69 (81)
T cd06537 21 ASLQELLAKALETLL---LSGVLTLVLEEDGTAVDSEDFFEL--LEDDTCLMVL 69 (81)
T ss_pred cCHHHHHHHHHHHhC---CCCceEEEEecCCCEEccHHHHhh--CCCCCEEEEE
Confidence 379999999999988 64 234445568888888765554 3344444443
No 243
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=27.47 E-value=1.3e+02 Score=26.26 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=39.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHH-HHH---HHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKK-NIE---TVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVV 71 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~-~I~---~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~ 71 (308)
|.|++. ++|+.+.+++++..++.++-. .+. .+.|++.-...-..++++|+..+-..++... -+|..|.
T Consensus 2 ~~i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~--~~G~~It 73 (156)
T COG2080 2 MPITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQ--AEGAEIT 73 (156)
T ss_pred CcEEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECCeEehHHHHHHHH--hCCCeEE
Confidence 456666 789999999999998777544 331 2233321122234566777766555444442 3454444
No 244
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.36 E-value=71 Score=26.30 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=35.8
Q ss_pred EeCC-CCcHHHHHHHHHHHhCCC-CCC------CCCeEEEe----------------CC-EecC-CCCChhhhccCCCCE
Q 021760 16 EVKP-EDKVSDVKKNIETVQGSD-VYP------ASQQMLIH----------------QG-KVLK-DVTTLEENKVAENSF 69 (308)
Q Consensus 16 eV~~-~~TV~~LK~~I~~~~g~~-~ip------~~~qkLIy----------------~G-KiL~-D~~tL~dygIk~g~~ 69 (308)
+++. +.||.+++..|.+....+ .++ .+..|+++ .. .+|+ ++++|..|||.+...
T Consensus 28 d~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenETE 107 (127)
T KOG4147|consen 28 DVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENETE 107 (127)
T ss_pred ccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcchh
Confidence 5665 679999887776553311 022 23344433 12 4555 567999999998877
Q ss_pred EEEEE
Q 021760 70 VVVML 74 (308)
Q Consensus 70 I~v~v 74 (308)
|-+..
T Consensus 108 is~F~ 112 (127)
T KOG4147|consen 108 ISFFC 112 (127)
T ss_pred hhhhh
Confidence 76543
No 245
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=27.27 E-value=90 Score=23.22 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=21.3
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHH
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALR 197 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALr 197 (308)
...+.++..|-.|| |.+++|..-|+
T Consensus 9 ~R~daA~dam~~lG---~~~~~v~~vl~ 33 (65)
T PF10440_consen 9 ERIDAALDAMRQLG---FSKKQVRPVLK 33 (65)
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 45678899999999 99999987665
No 246
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=26.56 E-value=1.9e+02 Score=18.79 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=31.2
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
.+|+.+. +....|+.++.+.+..... ..-.....+|++.+-+ +-+.+++.|.++
T Consensus 6 ~~~~~~~--~~~g~t~~~~~~~~~~~~~-----~~~~~~~vn~~~~~l~-----~~l~~~~~i~~i 59 (60)
T cd01616 6 PDGSAVE--LPKGATAMDFALKIHTDLG-----KGFIGALVNGQLVDLS-----YTLQDGDTVSIV 59 (60)
T ss_pred CCCCEEE--cCCCCCHHHHHHHHHHHHH-----hheEEEEECCEECCCC-----cCcCCCCEEEEe
Confidence 3465544 4567899998888766432 1222334677664422 346667777654
No 247
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=26.49 E-value=1.6e+02 Score=30.73 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=51.1
Q ss_pred EEEE--eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eC----CEecCCCCC----hhhhccCCCCEE
Q 021760 3 VFVK--TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQ----GKVLKDVTT----LEENKVAENSFV 70 (308)
Q Consensus 3 I~Vk--tl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~----GKiL~D~~t----L~dygIk~g~~I 70 (308)
++|| +-+|....|.|+..+|++++-+.+.++..+. .-+.-.|+ |. -+.++|+.. |+...+..++.|
T Consensus 189 lvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~--~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseNK~ 266 (622)
T KOG3751|consen 189 LVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCA--DDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSENKL 266 (622)
T ss_pred eeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhh--cccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCcee
Confidence 4444 4578889999999999999999998887742 22333442 22 255678754 566678888888
Q ss_pred EEEEecCC
Q 021760 71 VVMLTKSK 78 (308)
Q Consensus 71 ~v~v~k~k 78 (308)
+++-+.-|
T Consensus 267 lF~k~~~K 274 (622)
T KOG3751|consen 267 LFRKNPAK 274 (622)
T ss_pred EEeecchh
Confidence 88766444
No 248
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=26.34 E-value=75 Score=26.37 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=35.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC----CeEEEe-----------------CCEe-cCCCCChhhhccCCCC
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPAS----QQMLIH-----------------QGKV-LKDVTTLEENKVAENS 68 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~----~qkLIy-----------------~GKi-L~D~~tL~dygIk~g~ 68 (308)
..+.|-...+.|+.+|-..|.+..-. .+.. ..++|| .|+. -+|++||.+++..-||
T Consensus 37 ~elqIYtW~d~TLrEL~~Lik~~~~~--~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGD 114 (120)
T PF06487_consen 37 NELQIYTWMDATLRELADLIKDVNPP--ARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGD 114 (120)
T ss_dssp TEEEEEE-TT-BHHHHHHHHHHH-HH--HHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-
T ss_pred CeeEEEEcccCCHHHHHHHHHHhCcc--cCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCC
Confidence 35667778899999998888764210 0000 124444 2322 3678999999999999
Q ss_pred EEEEEE
Q 021760 69 FVVVML 74 (308)
Q Consensus 69 ~I~v~v 74 (308)
.|.|-+
T Consensus 115 yidvaI 120 (120)
T PF06487_consen 115 YIDVAI 120 (120)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 998754
No 249
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=26.19 E-value=94 Score=28.41 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=19.7
Q ss_pred CCCCC--eEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 39 YPASQ--QMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 39 ip~~~--qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
+|+.. +.|.|+|..|.+-+.|..-.-.+.++++++
T Consensus 156 lPv~~~Ki~lSf~~p~l~~~~~lv~~~~~~~~~v~~I 192 (236)
T KOG3073|consen 156 LPVNSRKIGLSFSGPKLSNVRDLVASLDDDDSVVFVI 192 (236)
T ss_pred CCCCccEEeecCCCcccccHHhhccccCCCCCEEEEE
Confidence 44544 456789988887665544332233455544
No 250
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=26.04 E-value=53 Score=21.59 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHhcCChH
Q 021760 188 DRETVIRALRAAYNNPE 204 (308)
Q Consensus 188 ~r~qv~~ALrAafnNpd 204 (308)
+...|++-|+|+-+||.
T Consensus 2 ~~~~V~~G~KAal~NPn 18 (36)
T PF10346_consen 2 DPNNVAGGYKAALHNPN 18 (36)
T ss_pred cHHHHHHHHHHHhcCCC
Confidence 45789999999999993
No 251
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=25.80 E-value=61 Score=29.25 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---CCeEE--EeCC-----EecCCCC--Chhhhc
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---SQQML--IHQG-----KVLKDVT--TLEENK 63 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~---~~qkL--Iy~G-----KiL~D~~--tL~dyg 63 (308)
|-.|.+.|.+.++..++|++|.++.| ++- +..|+ +..+ +.|+|+. .|.+..
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlg---v~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~~~~ 194 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLG---VSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILFDEI 194 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH------HHHHTT-EEEEEETTEE---EE--TT-T----GGG
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhC---CChhhheeEEEEEEecCCcccceeccccchhhhhhhh
Confidence 55688999999999999999999998 543 34454 4444 4577764 555543
No 252
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.24 E-value=3.3e+02 Score=21.22 Aligned_cols=33 Identities=9% Similarity=0.214 Sum_probs=27.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhC
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQG 35 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g 35 (308)
+|++. ..|..+.+.++.+.+-.+|.+++.+.+.
T Consensus 2 ~~K~~-y~gdi~it~~d~~~s~e~L~~~v~~~c~ 34 (83)
T cd06404 2 RVKAA-YNGDIMITSIDPSISLEELCNEVRDMCR 34 (83)
T ss_pred eEEEE-ecCcEEEEEcCCCcCHHHHHHHHHHHhC
Confidence 44454 4778888899999999999999999987
No 253
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=25.10 E-value=2.1e+02 Score=22.01 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=31.1
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe
Q 021760 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ 44 (308)
Q Consensus 5 Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~q 44 (308)
|-..+|+...+-|.+++|+.++-+.+.+..+ +.+..-
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~---ldp~eh 40 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQ---LDPMEH 40 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcC---CChhHh
Confidence 4456888899999999999999999999998 656654
No 254
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=24.65 E-value=53 Score=24.70 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHhChhhHHH
Q 021760 282 NSQQFQALRTMVQANPQILQQ 302 (308)
Q Consensus 282 ~~pqf~~lRq~vqqnP~~L~~ 302 (308)
.-.+|.+|-..+|+||+|-..
T Consensus 57 tv~~fN~I~~~~q~Dp~L~~r 77 (78)
T PF13767_consen 57 TVERFNEITQAAQSDPELRQR 77 (78)
T ss_pred CHHHHHHHHHHHHcCHHHHhc
Confidence 346899999999999998654
No 255
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.35 E-value=85 Score=22.61 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=8.5
Q ss_pred cCChHHHHHHHH
Q 021760 200 YNNPERAVEYLY 211 (308)
Q Consensus 200 fnNpdRAvEYL~ 211 (308)
-+.+|+|.|||.
T Consensus 36 lg~~~~a~eYi~ 47 (62)
T PF14689_consen 36 LGKYEEAKEYIK 47 (62)
T ss_dssp TT-HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 457889999984
No 256
>PF09030 Creb_binding: Creb binding; InterPro: IPR014744 This entry represents the interlocking domain of the eukaryotic nuclear receptor coactivators CREBP and p300. The interlocking domain forms a 3-helical non-globular array that forms interlocked heterodimers with its target. Nuclear receptors are ligand-activated transcription factors involved in the regulation of many processes, including development, reproduction and homeostasis. Nuclear receptor coactivators act to modulate the function of nuclear receptors. Coactivators associate with promoters and enhancers primarily through protein-protein contacts to facilitate the interaction between DNA-bound transcription factors and the transcription machinery. Many of these coactivators are structurally related, including CBP (CREB-binding protein) and p300 []. CBP and p300 both have histone acetyltransferase activity (2.3.1.48 from EC). CBP/p300 proteins function synergistically to activate transcription, acting to remodel chromatin and to recruit RNA polymerase II and the basal transcription machinery. CBP is required for proper cell cycle control, differentiation and apoptosis. The interaction of CBP/p300 with transcription factors involves several small domains. The IBiD domain in the C-terminal of CBP is responsible for CBP interaction with IRF-3, as well as with the adenoviral oncoprotein E1A, TIF-2 coactivator, and the IRF homologue KSHV IRF-1 []. ; GO: 0003713 transcription coactivator activity, 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0016573 histone acetylation, 0000123 histone acetyltransferase complex, 0005634 nucleus; PDB: 2KKJ_A 2C52_A 1JJS_A 2L14_A 1KBH_B 1ZOQ_C.
Probab=24.34 E-value=64 Score=26.19 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=23.2
Q ss_pred hHHhhCh---HHHHHHHHHHHhChhhHHHHHh
Q 021760 277 LDFLRNS---QQFQALRTMVQANPQILQQWAL 305 (308)
Q Consensus 277 l~~Lr~~---pqf~~lRq~vqqnP~~L~~~L~ 305 (308)
|..||+- -|=+++=.|+.+||+|+-.|+-
T Consensus 60 LrTLkSPsSP~QQQQVLnILkSNPqLMAAFIK 91 (104)
T PF09030_consen 60 LRTLKSPSSPQQQQQVLNILKSNPQLMAAFIK 91 (104)
T ss_dssp HHCHCSSSSCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhhCHHHHHHHHH
Confidence 5666654 3778899999999999999874
No 257
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=24.28 E-value=2.8e+02 Score=21.70 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=34.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CCEec-CCCCChhhh--ccCCCCEEEEEEe
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy-~GKiL-~D~~tL~dy--gIk~g~~I~v~v~ 75 (308)
-.+.|+.++|+..|-.-|.+..+ +...+.-.+| +...- ..|.+++++ ..+-++.|+|.-+
T Consensus 18 ~k~kI~~~~~f~~vi~fLrk~Lk---~~~~~slFlYin~sFaPspDe~vg~L~~~f~~~~~Liv~Ys 81 (87)
T PF04110_consen 18 KKFKISASQTFATVIAFLRKKLK---LKPSDSLFLYINNSFAPSPDETVGDLYRCFGTNGELIVSYS 81 (87)
T ss_dssp -EEEEETTSBTHHHHHHHHHHCT-------SS-EEEEEEEE---TTSBHHHHHHHH-BTTBEEEEEE
T ss_pred cEEEECCCCchHHHHHHHHHHhC---CccCCeEEEEEcCccCCCchhHHHHHHHHhCCCCEEEEEEe
Confidence 35677889999999999999988 5444444444 44333 456666655 2334556666544
No 258
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=23.94 E-value=1e+02 Score=23.04 Aligned_cols=43 Identities=12% Similarity=0.340 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhc-cCCCCEEEEE
Q 021760 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENK-VAENSFVVVM 73 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dyg-Ik~g~~I~v~ 73 (308)
.|+.+|++...+++| +. ....|.-.|-. +.|.. |.+||.|+++
T Consensus 26 ~SleeLl~ia~~kfg---~~-~~~v~~~dgae------IdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 26 DSLEELLKIASEKFG---FS-ATKVLNEDGAE------IDDIDVIRDGDHLYLV 69 (69)
T ss_pred ccHHHHHHHHHHHhC---CC-ceEEEcCCCCE------EeEEEEEEcCCEEEEC
Confidence 699999999999999 54 22222233333 33332 5778888763
No 259
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=23.75 E-value=1.9e+02 Score=22.36 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCC-CCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 21 DKVSDVKKNIETVQGSDVYPA-SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~-~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
.+..+|+.|..+.++ ++. ..+.|.-.|..++|+.-+..+ . ++++.|++.
T Consensus 21 ~sL~eL~~K~~~~l~---l~~~~~lvL~eDGT~Vd~EeyF~tL--p-~nt~l~vL~ 70 (79)
T cd06538 21 DSLEDLLNKVLDALL---LDCISSLVLDEDGTGVDTEEFFQAL--A-DNTVFMVLG 70 (79)
T ss_pred CCHHHHHHHHHHHcC---CCCccEEEEecCCcEEccHHHHhhC--C-CCcEEEEEC
Confidence 379999999999998 632 234555689888887655543 3 344444443
No 260
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=23.63 E-value=3.4e+02 Score=20.74 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=42.8
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CCEecCCCCChhhhccCCCCEEEEE
Q 021760 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy-~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
.+.|..+.....+-+..+++++ ++...--+|- .|--++..++..+.-+|.|+.|.++
T Consensus 19 v~sVPE~apftaVlkfaAeeF~---vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFK---VPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT---S-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcC---CCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 3577777777777778888888 8888877775 5666899999999999999998764
No 261
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=23.31 E-value=86 Score=27.98 Aligned_cols=28 Identities=7% Similarity=0.214 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcC
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYN 201 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafn 201 (308)
..++.+..|+.+| |.+.++.+|++....
T Consensus 147 ~~~e~~~aL~~LG---y~~~~a~~ai~~~~~ 174 (194)
T PRK14605 147 ANSDILATLTALG---YSSSEAAKAISSLGD 174 (194)
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHhhc
Confidence 3578999999999 999999999997753
No 262
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=23.28 E-value=44 Score=26.71 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=33.4
Q ss_pred CcEEEEEeC---CCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CCE------ec-CC-CCCh---hhhccCCCCEEEEEE
Q 021760 10 GTHFEIEVK---PEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGK------VL-KD-VTTL---EENKVAENSFVVVML 74 (308)
Q Consensus 10 gk~~~leV~---~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy-~GK------iL-~D-~~tL---~dygIk~g~~I~v~v 74 (308)
.+.+.++++ ...||.+|-..|.+..- .++-.|+. +++ +| +| |.-| .+|-|++||.|.++-
T Consensus 17 ~k~h~v~l~~~~~~~ti~~Li~~l~~nll-----~~r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~l~~~D~I~FiS 91 (96)
T PF09138_consen 17 QKKHKVSLPSDGEPATIKDLIDYLRDNLL-----KERPELFLEGGSVRPGILVLINDADWELLGEEDYVLKDGDNITFIS 91 (96)
T ss_dssp -SEEEEEE-SSCSC-BHHHHHHHHCCCT------SSGHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB--TTEEEEEEE
T ss_pred ceeEEEEcCCCCCCcCHHHHHHHHHHhcc-----CCCHhHEecCCeEcCcEEEEEcCccceeecCcceEcCCCCEEEEEc
Confidence 357778877 56789998888776432 23333332 221 12 33 2223 358999999999875
Q ss_pred ec
Q 021760 75 TK 76 (308)
Q Consensus 75 ~k 76 (308)
..
T Consensus 92 TL 93 (96)
T PF09138_consen 92 TL 93 (96)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 263
>PF01577 Peptidase_S30: Potyvirus P1 protease; InterPro: IPR002540 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The potyviridae are a family of positive strand RNA viruses, members of which include Zucchini yellow mosaic virus, and Turnip mosaic virus (strain Japanese) which cause considerable losses of crops worldwide. This entry represents a C-terminal region from various plant potyvirus P1 proteins (found at the N terminus of the polyprotein). The C terminus of P1 is a serine peptidase belonging to MEROPS peptidase family S30 (clan PA(S)). It is the protease responsible for autocatalytic cleavage between P1 and the helper component protease, which is a cysteine peptidase belonging to MEROPS peptidase family C6 IPR001456 from INTERPRO [, ]. The P1 protein may be involved in virus-host interactions [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=23.17 E-value=1.8e+02 Score=26.39 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=48.6
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL-Iy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|.++-..|..-.+|+..+.....|-..+....... ...+...+ =++|-+|.....+. ++-..+++++|-.+.
T Consensus 152 v~~~He~G~~~r~Dl~~~~~~~~i~~~~a~~~~~~-~~~~~~~~~G~SG~vl~~~~~~~-~~~~~~~~FIVRGr~ 224 (245)
T PF01577_consen 152 VETKHERGKRKRRDLNIDEFTESILRLLAKKTYRG-RIVDDIKIKGDSGLVLPRRKLIG-FGRTRDDFFIVRGRH 224 (245)
T ss_pred EECCccCCCcccEECCccHHHHHHHHHHHhhcCCC-cccccceeccceEEEEeCCcccC-ccccCCCeEEEEecc
Confidence 34444567666778888888888888887775432 44556667 45778888777777 776677777665543
No 264
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=22.98 E-value=32 Score=25.12 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=28.0
Q ss_pred cCCcHHHHHHHHHH-hcCCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 168 AGSNLEATVQQILD-MGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 168 ~g~~~e~~v~~i~~-MG~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
+..+.+ .|..+++ +| |+.+-|..|++-++.|-.+-+.|+.
T Consensus 14 s~~e~~-~l~~~~~~~~---~~~~~v~~ai~~~~~~~~~~~~Yi~ 54 (77)
T PF07261_consen 14 SPSEIE-KLEKWIDDYG---FSPEVVNEAIEYALENNKRSFNYIE 54 (77)
T ss_dssp -HHHHH-HHHHHHCCCH---HHHHHHHHHHHHHHHCT--SHHHHH
T ss_pred CHHHHH-HHHHHHHHcC---CCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 334433 4555444 89 9999999999999987777788875
No 265
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=22.83 E-value=98 Score=23.73 Aligned_cols=23 Identities=13% Similarity=0.279 Sum_probs=18.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhC
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQG 35 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~g 35 (308)
+.+++..+.|+.+||+.+.++-.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 56889999999999999987754
No 266
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=22.75 E-value=66 Score=21.54 Aligned_cols=24 Identities=13% Similarity=0.566 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhChhhHHHHHhcCC
Q 021760 285 QFQALRTMVQANPQILQQWALIVP 308 (308)
Q Consensus 285 qf~~lRq~vqqnP~~L~~~L~~~~ 308 (308)
-...+..+++.+|+||..+-.-+|
T Consensus 24 v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 24 VIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred HHHHHHHHHccCHHHHHHHHhhCc
Confidence 467899999999999998877665
No 267
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=22.58 E-value=1e+02 Score=25.13 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred cHHHHHHHHHH-hcCCcc-CHHHHHHHHHHhc
Q 021760 171 NLEATVQQILD-MGGGSW-DRETVIRALRAAY 200 (308)
Q Consensus 171 ~~e~~v~~i~~-MG~~~f-~r~qv~~ALrAaf 200 (308)
+|++-|..+++ || + +|++..+|+||-+
T Consensus 1 ~~~~fl~~V~~~~~---l~~~~~A~~a~~avL 29 (125)
T PF10025_consen 1 KYDEFLDEVRERAG---LPDREEAYRATRAVL 29 (125)
T ss_dssp HHHHHHHHHHHHHT------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 47788889865 78 8 9999999999764
No 268
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=22.37 E-value=33 Score=33.58 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=44.0
Q ss_pred EEEEeCCCCcHH---HHHHHHHHHhCCCCCCCCCe--EEEeCCEecCCCC-ChhhhccCCCCEEEEEEec
Q 021760 13 FEIEVKPEDKVS---DVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVT-TLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 13 ~~leV~~~~TV~---~LK~~I~~~~g~~~ip~~~q--kLIy~GKiL~D~~-tL~dygIk~g~~I~v~v~k 76 (308)
+.+.+.+..+-. ++++......| +....+ +++|.++.|+|.. .|..++.++-+.|.++...
T Consensus 73 ~~~~i~p~~~~g~~~d~a~~~~~~ag---~sh~d~~~k~~y~~~e~rd~~l~l~~~g~p~~sk~~~~~~~ 139 (344)
T KOG4361|consen 73 HGLAIVPQYPSGNALDLAKPLTEDAG---LSHYDQEVKLVYVDKELRDQSLRLSSAGVPDASKINVVPDP 139 (344)
T ss_pred cccccccccccccchhhhcccccccc---eeecccccccceecccccccccccccccCcccccceeccCh
Confidence 345555554444 77777777777 444555 9999999998865 6899999998888887654
No 269
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=22.20 E-value=3.6e+02 Score=28.15 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=14.1
Q ss_pred cccccCCcHHHHHHHHHHhc
Q 021760 164 SNLVAGSNLEATVQQILDMG 183 (308)
Q Consensus 164 s~l~~g~~~e~~v~~i~~MG 183 (308)
....+|+.-+....+|+.=|
T Consensus 350 dQV~tGeae~~~~e~Iv~~~ 369 (574)
T PF07462_consen 350 DQVTTGEAENAQPENIVPEG 369 (574)
T ss_pred ccceeccccccchhhhhcCc
Confidence 45677777776677777766
No 270
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=22.16 E-value=3.7e+02 Score=20.65 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=46.6
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 15 leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy-~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
+.|..+.....+-+-.+++++ ++...--+|- .|-=++..++-..+-+|.|+.|.++-|-+
T Consensus 20 lsVpE~aPftAvlkfaAEeFk---v~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 20 LSVPESTPFTAVLKFAAEEFK---VPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EeccccCchHHHHHHHHHhcC---CCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 467767667777777888888 8777776665 56667888999999999999999886643
No 271
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=22.01 E-value=46 Score=29.30 Aligned_cols=21 Identities=38% Similarity=0.776 Sum_probs=16.9
Q ss_pred cccCCcHHHH---HHHHHHhcCCc
Q 021760 166 LVAGSNLEAT---VQQILDMGGGS 186 (308)
Q Consensus 166 l~~g~~~e~~---v~~i~~MG~~~ 186 (308)
+|.|.+.+.| +++|.+||||.
T Consensus 69 iviG~~~~dm~~A~n~l~~~gGG~ 92 (171)
T PF13382_consen 69 IVIGTNDEDMALAANRLIEMGGGI 92 (171)
T ss_dssp EEEESSHHHHHHHHHHHHHTTSEE
T ss_pred EEEECCHHHHHHHHHHHHHhCCCE
Confidence 4778877765 78999999885
No 272
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.88 E-value=1.9e+02 Score=22.00 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=29.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML 46 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL 46 (308)
..+.+.|+...+=.++|+.|+..++ +.+...+.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~---VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFD---VKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhC---CceEEEEe
Confidence 5899999999999999999999999 77776654
No 273
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.74 E-value=96 Score=28.68 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=24.9
Q ss_pred cCCcHHHHHHHHHHhcCCcc-CHHHHHHHHHHh
Q 021760 168 AGSNLEATVQQILDMGGGSW-DRETVIRALRAA 199 (308)
Q Consensus 168 ~g~~~e~~v~~i~~MG~~~f-~r~qv~~ALrAa 199 (308)
.|++.+..|++|.+=+ | -++-|++||||-
T Consensus 6 ~gs~n~~LId~L~~~~---~Ir~~~v~~A~~a~ 35 (237)
T KOG1661|consen 6 SGSDNDDLIDNLRENK---IIRTRRVEQAMRAT 35 (237)
T ss_pred cCcchHHHHHHHHhcc---hhHHHHHHHHHHhh
Confidence 5788899999999999 7 777799999874
No 274
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=21.63 E-value=3.5e+02 Score=20.23 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=40.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--e-CC--EecCC-CCChhhhcc--CCCCEEEEEEec
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H-QG--KVLKD-VTTLEENKV--AENSFVVVMLTK 76 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y-~G--KiL~D-~~tL~dygI--k~g~~I~v~v~k 76 (308)
+....|.|..++|+.+|-+.+.++.+.+.- +....|+ + +| +.|.| +..|.-... +++....+++++
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~-~~~y~L~e~~~~~~er~L~~~e~Pl~~~~~~~~~~~~~~f~lr~ 88 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDD-PEEYVLVEVLPDGKERVLPDDENPLQLQKLWPRRGPNLRFVLRK 88 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCC-cccEEEEEEeCCcEEEEeCCCCcceEehhhCCCCCCcEEEEEEe
Confidence 556789999999999999999999993211 3455553 3 45 56655 444333221 233444444443
No 275
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=21.54 E-value=2e+02 Score=29.94 Aligned_cols=6 Identities=0% Similarity=0.302 Sum_probs=2.3
Q ss_pred cCCcHH
Q 021760 168 AGSNLE 173 (308)
Q Consensus 168 ~g~~~e 173 (308)
.+++|.
T Consensus 322 ~AQdy~ 327 (574)
T PF07462_consen 322 QAQDYD 327 (574)
T ss_pred hccccc
Confidence 334433
No 276
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=21.49 E-value=71 Score=24.07 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=10.0
Q ss_pred CCccCHHHHHHHHHHhcCCh
Q 021760 184 GGSWDRETVIRALRAAYNNP 203 (308)
Q Consensus 184 ~~~f~r~qv~~ALrAafnNp 203 (308)
-|.|.|+|++. +.+.|.|.
T Consensus 5 ~g~ftr~qA~a-V~a~y~NV 23 (70)
T PF06006_consen 5 EGPFTREQAEA-VAAQYRNV 23 (70)
T ss_dssp -----HHHHHH-HHHH-TTE
T ss_pred CCCccHHHHHH-HHHHhcce
Confidence 47899999864 77777775
No 277
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=21.15 E-value=2e+02 Score=20.48 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCEecCCCCChhhhccCCCCEEEEE
Q 021760 20 EDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 20 ~~TV~~LK~~I~~~~g~~~ip~~~qkLIy--~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
..|...|.+.|.++.+ ++-. .|-+| .|+.+. .|++ |++|...++.
T Consensus 8 ~~s~e~lL~~it~~v~---l~~g-Vr~lyt~~G~~V~---~l~~--l~dg~~yVa~ 54 (60)
T PF03607_consen 8 FRSFEQLLDEITEKVQ---LPSG-VRKLYTLDGKRVK---SLDE--LEDGGSYVAS 54 (60)
T ss_dssp HSSHHHHHHHHHHSSS---STTS--SEEEETTSSEES---SGGG--S-TTEEEEEE
T ss_pred hcCHHHHHHHHHhhcC---CCcc-cceEECCCCCEeC---CHHH--HCCCCEEEEE
Confidence 3578999999999887 6655 55555 677664 3455 6677766554
No 278
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.09 E-value=1.3e+02 Score=31.09 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=35.3
Q ss_pred EEEEeC-CCCcHHHHHHHHH-HHhCCCCCCCC----CeEEEeCCEec--CCCCChhhhccCCCCEEEEE
Q 021760 13 FEIEVK-PEDKVSDVKKNIE-TVQGSDVYPAS----QQMLIHQGKVL--KDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 13 ~~leV~-~~~TV~~LK~~I~-~~~g~~~ip~~----~qkLIy~GKiL--~D~~tL~dygIk~g~~I~v~ 73 (308)
..|++. ...|+.+|-.+|- .+.+ +.++ .++|||.= -. ..+++|+++||.+|+.|.+.
T Consensus 445 ~~l~ln~~~~~~~~L~D~ivk~r~~---~~pdvsll~~~Li~~~-d~e~n~~k~lsel~i~ngsli~~~ 509 (603)
T KOG2013|consen 445 LVLELNTRKSTLRDLVDKIVKTRLG---YLPDVSLLDDDLIDDM-DFEDNLDKTLSELGILNGSLINVK 509 (603)
T ss_pred eEEEeccccchHHHHHHHHHHHHhc---cCcccchhhhhhcccc-cchhhhhhhHHhhCCCCCceEeee
Confidence 345554 4568999988885 4445 4332 23344332 11 23689999999999966654
No 279
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=21.08 E-value=85 Score=30.53 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=38.5
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhh
Q 021760 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dy 62 (308)
.|.++...||.+||+-+..+.+.. -...++-++|++..|.++.||.+.
T Consensus 167 fvrcsa~~Tv~hlkkfl~~k~~~~-~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 167 FLRCSAAATVNHLKKFLRKKMDNL-SNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred eEeccHHHHHHHHHHHHHHHhccc-cchhhheeecCCccccchhhhhhh
Confidence 366777889999999999998721 344566789999999999999865
No 280
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=20.99 E-value=3.8e+02 Score=20.64 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=33.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK 51 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GK 51 (308)
+|++. ..|.+..|.+..--...+|..++...+| ..+-|.|-.+
T Consensus 2 RiKfE-~~gEKRIi~f~RPvkf~dl~~kv~~afG------q~mdl~ytn~ 44 (79)
T cd06405 2 RIKFE-HNGEKRIIQFPRPVKFKDLQQKVTTAFG------QPMDLHYTNN 44 (79)
T ss_pred eEEEE-ecCceEEEecCCCccHHHHHHHHHHHhC------CeeeEEEecc
Confidence 45555 5788899999988999999999999999 3456666554
No 281
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=20.85 E-value=3.3e+02 Score=19.92 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHh----C-CCCC
Q 021760 171 NLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS----G-IPEQ 217 (308)
Q Consensus 171 ~~e~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~----G-IP~~ 217 (308)
..+++|..|... | -..+=++++|.-.-.|.+||+.-... | ||.+
T Consensus 11 ~q~~~v~~~~~~Tg---mn~~~s~~cLe~~~Wd~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 11 EQQEMVQAFSAQTG---MNAEYSQMCLEDNNWDYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCChh
Confidence 357788887775 6 77888899999999999999966544 4 8864
No 282
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=20.14 E-value=2.8e+02 Score=18.87 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.6
Q ss_pred cCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 187 WDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 187 f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
.++.-+.|=|||--+|.++|++-|.
T Consensus 29 ~~d~~llRFLRARkf~v~~A~~mL~ 53 (55)
T PF03765_consen 29 HDDNFLLRFLRARKFDVEKAFKMLK 53 (55)
T ss_dssp -SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 7889999999999999999999885
No 283
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=20.07 E-value=1.3e+02 Score=26.01 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHH
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALR 197 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALr 197 (308)
+.+.....|.+.| |+++++.+||.
T Consensus 22 d~~~L~~~L~~aG---F~~~eI~~Al~ 45 (155)
T PF04361_consen 22 DQDDLTRELSAAG---FEDEEINKALD 45 (155)
T ss_pred CHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 4678888999999 99999998876
No 284
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=20.02 E-value=80 Score=24.28 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=15.2
Q ss_pred HHHHHHHHHhChhhHHHHHhcC
Q 021760 286 FQALRTMVQANPQILQQWALIV 307 (308)
Q Consensus 286 f~~lRq~vqqnP~~L~~~L~~~ 307 (308)
+.+|+.++++||+....||+.=
T Consensus 35 l~~mK~l~~~~p~~ar~lL~~n 56 (84)
T PF14327_consen 35 LSQMKQLAQQNPEQARQLLQQN 56 (84)
T ss_dssp HHHHHHHHC----HHHHHHHS-
T ss_pred HHHHHHHHHhCHHHHHHHHHHC
Confidence 6789999999999999999753
Done!