Query 021760
Match_columns 308
No_of_seqs 347 out of 1366
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 1E-53 3.4E-58 412.3 26.3 260 1-307 8-267 (368)
2 3m62_B UV excision repair prot 99.8 2.3E-20 7.9E-25 149.9 8.2 77 1-80 2-78 (106)
3 1uel_A HHR23B, UV excision rep 99.8 4.4E-19 1.5E-23 139.4 12.4 77 1-80 1-80 (95)
4 4dwf_A HLA-B-associated transc 99.8 1.9E-19 6.4E-24 139.4 9.8 75 1-79 6-80 (90)
5 3phx_B Ubiquitin-like protein 99.8 2.8E-19 9.7E-24 135.0 10.4 74 1-77 5-78 (79)
6 4fbj_B NEDD8; effector-HOST ta 99.8 2.7E-19 9.3E-24 138.6 10.1 78 1-81 1-78 (88)
7 2wyq_A HHR23A, UV excision rep 99.8 4.8E-19 1.7E-23 135.2 10.3 76 1-79 6-84 (85)
8 3v6c_B Ubiquitin; structural g 99.8 5E-19 1.7E-23 137.7 9.8 74 1-77 18-91 (91)
9 2kk8_A Uncharacterized protein 99.8 5.3E-19 1.8E-23 136.3 9.6 72 1-75 11-83 (84)
10 4a20_A Ubiquitin-like protein 99.8 5E-19 1.7E-23 140.6 8.5 74 1-77 20-97 (98)
11 1wx7_A Ubiquilin 3; ubiquitin- 99.8 1.9E-18 6.5E-23 138.3 11.8 76 1-80 18-93 (106)
12 3plu_A Ubiquitin-like modifier 99.8 8.5E-19 2.9E-23 137.5 9.3 71 1-74 22-92 (93)
13 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 1.9E-18 6.6E-23 135.1 11.0 77 1-80 2-78 (96)
14 2lxa_A Ubiquitin-like protein 99.8 5.1E-19 1.8E-23 137.6 7.4 74 1-77 2-79 (87)
15 4hcn_B Polyubiquitin, ubiquiti 99.8 1.8E-18 6.1E-23 136.6 10.1 75 1-78 23-97 (98)
16 1ndd_A NEDD8, protein (ubiquit 99.8 3E-18 1E-22 127.4 10.7 74 1-77 1-74 (76)
17 3dbh_I NEDD8; cell cycle, acti 99.8 1.4E-18 4.8E-23 133.4 9.0 75 1-78 13-87 (88)
18 2faz_A Ubiquitin-like containi 99.8 2.5E-18 8.7E-23 129.3 9.6 73 1-76 3-77 (78)
19 3a9j_A Ubiquitin; protein comp 99.8 5.4E-18 1.9E-22 125.9 10.9 74 1-77 1-74 (76)
20 3n3k_B Ubiquitin; hydrolase, p 99.8 2.6E-18 8.8E-23 130.9 9.3 76 1-79 4-79 (85)
21 1uh6_A Ubiquitin-like 5; beta- 99.8 1.4E-18 4.9E-23 138.3 8.1 71 1-74 29-99 (100)
22 2dzi_A Ubiquitin-like protein 99.8 3.3E-18 1.1E-22 129.2 9.6 73 1-76 8-80 (81)
23 1ttn_A DC-UBP, dendritic cell- 99.8 2.8E-18 9.4E-23 137.6 9.4 76 1-79 24-99 (106)
24 2uyz_B Small ubiquitin-related 99.8 2.9E-18 9.8E-23 129.5 8.9 74 1-77 4-77 (79)
25 1wy8_A NP95-like ring finger p 99.8 7.9E-18 2.7E-22 129.8 11.5 76 1-79 8-85 (89)
26 4eew_A Large proline-rich prot 99.7 3.6E-18 1.2E-22 131.6 9.4 71 1-75 18-88 (88)
27 3mtn_B UBA80, ubcep1, ubiquiti 99.7 4.7E-18 1.6E-22 129.3 9.9 76 1-79 4-79 (85)
28 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 6.3E-18 2.2E-22 129.7 10.5 75 1-78 8-82 (87)
29 2hj8_A Interferon-induced 17 k 99.7 3.5E-18 1.2E-22 132.2 8.9 75 1-78 5-79 (88)
30 1wgd_A Homocysteine-responsive 99.7 7E-18 2.4E-22 131.7 10.2 76 1-79 8-89 (93)
31 1sif_A Ubiquitin; hydrophobic 99.7 7.2E-18 2.5E-22 130.6 9.9 75 1-78 10-84 (88)
32 1ify_A HHR23A, UV excision rep 99.7 1.5E-18 5.2E-23 120.9 5.4 49 165-216 1-49 (49)
33 1wia_A Hypothetical ubiquitin- 99.7 7.7E-18 2.6E-22 131.9 10.1 74 1-80 8-82 (95)
34 1v2y_A 3300001G02RIK protein; 99.7 3.9E-18 1.3E-22 137.0 8.0 76 1-79 8-99 (105)
35 1wyw_B Ubiquitin-like protein 99.7 6.3E-18 2.2E-22 133.4 9.1 75 1-78 22-96 (97)
36 2kan_A Uncharacterized protein 99.7 1.2E-17 4.3E-22 131.2 10.7 75 1-79 16-91 (94)
37 2bwf_A Ubiquitin-like protein 99.7 1.6E-17 5.4E-22 124.2 10.2 71 1-75 5-75 (77)
38 1wju_A NEDD8 ultimate buster-1 99.7 1.5E-17 5.3E-22 132.3 10.0 72 3-78 18-93 (100)
39 1wx8_A Riken cDNA 4931431F19; 99.7 8E-18 2.7E-22 131.9 8.1 75 1-79 18-92 (96)
40 1yx5_B Ubiquitin; proteasome, 99.7 2.7E-17 9.2E-22 129.5 11.0 76 1-79 1-76 (98)
41 1v5o_A 1700011N24RIK protein; 99.7 2E-17 7E-22 131.6 10.4 76 1-79 8-88 (102)
42 3vdz_A Ubiquitin-40S ribosomal 99.7 2E-17 6.8E-22 133.8 10.2 75 1-78 36-110 (111)
43 1yqb_A Ubiquilin 3; structural 99.7 1.8E-17 6.1E-22 131.7 9.7 76 1-80 23-98 (100)
44 2klc_A Ubiquilin-1; ubiquitin- 99.7 2.4E-17 8.3E-22 131.1 10.4 74 1-78 26-99 (101)
45 1j8c_A Ubiquitin-like protein 99.7 2.6E-17 8.9E-22 136.0 10.2 76 1-80 33-108 (125)
46 3b1l_X E3 ubiquitin-protein li 99.5 6.4E-19 2.2E-23 131.8 0.0 74 1-77 1-74 (76)
47 1wgh_A Ubiquitin-like 3, HCG-1 99.7 5.1E-17 1.7E-21 132.7 10.9 77 1-77 17-100 (116)
48 2l7r_A Ubiquitin-like protein 99.7 3.7E-17 1.3E-21 128.0 9.5 72 1-77 20-91 (93)
49 3l0w_B Monoubiquitinated proli 99.7 1E-16 3.5E-21 138.9 11.8 77 1-80 1-77 (169)
50 1x1m_A Ubiquitin-like protein 99.7 8.5E-17 2.9E-21 129.1 10.3 75 1-78 13-102 (107)
51 1wgg_A Ubiquitin carboxyl-term 99.7 5.3E-17 1.8E-21 128.1 8.3 72 1-77 8-80 (96)
52 2ojr_A Ubiquitin; lanthide-bin 99.7 1.7E-16 5.7E-21 128.1 10.9 75 1-78 36-110 (111)
53 2fnj_B Transcription elongatio 99.7 7.2E-17 2.5E-21 132.0 8.5 72 1-75 1-80 (118)
54 4ajy_B Transcription elongatio 99.7 7.2E-17 2.5E-21 131.8 8.4 73 1-76 1-81 (118)
55 1wxv_A BAG-family molecular ch 99.7 2.4E-16 8.3E-21 122.6 10.4 73 1-77 8-86 (92)
56 1se9_A Ubiquitin family; ubiqu 99.7 1.5E-16 5.1E-21 131.6 9.6 79 1-79 17-106 (126)
57 2kdb_A Homocysteine-responsive 99.7 7.8E-17 2.7E-21 128.1 7.5 71 1-73 24-99 (99)
58 3rt3_B Ubiquitin-like protein 99.7 1.9E-16 6.5E-21 134.6 10.3 75 1-78 82-156 (159)
59 3m63_B Ubiquitin domain-contai 99.7 4.1E-17 1.4E-21 129.9 5.7 72 1-76 29-100 (101)
60 2gow_A HCG-1 protein, ubiquiti 99.7 1.1E-16 3.7E-21 132.4 8.4 77 1-77 18-101 (125)
61 2kdi_A Ubiquitin, vacuolar pro 99.7 3.1E-16 1.1E-20 127.4 11.0 76 1-79 10-85 (114)
62 1v5t_A 8430435I17RIK protein; 99.7 2.3E-16 8E-21 122.7 9.7 72 1-76 8-83 (90)
63 1we6_A Splicing factor, putati 99.7 1.9E-16 6.5E-21 127.7 8.3 76 1-79 28-107 (111)
64 2kd0_A LRR repeats and ubiquit 99.7 3.8E-16 1.3E-20 120.3 9.6 70 3-75 14-83 (85)
65 3u30_A Ubiquitin, linear DI-ub 99.7 4.2E-16 1.4E-20 134.5 10.6 74 1-77 21-94 (172)
66 1v86_A DNA segment, CHR 7, way 99.6 2E-16 6.8E-21 124.4 7.1 71 1-76 18-88 (95)
67 3rt3_B Ubiquitin-like protein 99.6 5.4E-16 1.8E-20 131.8 10.2 73 1-76 3-77 (159)
68 3q3f_A Ribonuclease/ubiquitin 99.6 3.7E-16 1.3E-20 137.8 9.4 77 1-80 106-182 (189)
69 4dbg_A Ranbp-type and C3HC4-ty 99.6 6.8E-16 2.3E-20 123.8 9.8 73 1-76 25-100 (105)
70 2daf_A FLJ35834 protein; hypot 99.6 8.9E-16 3E-20 124.9 10.0 73 2-77 17-90 (118)
71 3u5e_m 60S ribosomal protein L 99.6 2.7E-17 9.3E-22 136.1 0.0 76 1-79 1-76 (128)
72 3b08_A Polyubiquitin-C, ubiqui 99.6 2.3E-15 7.7E-20 126.0 11.1 74 1-77 1-74 (152)
73 3b08_A Polyubiquitin-C, ubiqui 99.6 2.6E-15 8.8E-20 125.6 10.6 75 1-78 77-151 (152)
74 3u30_A Ubiquitin, linear DI-ub 99.6 1.4E-15 4.8E-20 131.2 8.7 75 1-78 97-171 (172)
75 1we7_A SF3A1 protein; structur 99.6 3.2E-15 1.1E-19 121.3 10.3 76 1-79 26-111 (115)
76 3u5c_f 40S ribosomal protein S 99.6 1.6E-16 5.6E-21 135.5 1.0 76 1-79 1-76 (152)
77 2dzj_A Synaptic glycoprotein S 99.6 1.7E-15 5.7E-20 117.8 6.0 69 1-72 11-85 (88)
78 2dzm_A FAS-associated factor 1 99.5 6.7E-15 2.3E-19 117.2 7.0 71 1-75 9-81 (100)
79 4b6w_A Tubulin-specific chaper 99.5 5.9E-15 2E-19 114.3 6.0 73 2-77 4-85 (86)
80 3ai5_A Yeast enhanced green fl 99.5 1.8E-14 6.2E-19 135.5 9.6 74 1-77 234-307 (307)
81 2kjr_A CG11242; UBL, ubiquitin 99.5 8.2E-14 2.8E-18 109.8 9.6 70 1-73 16-93 (95)
82 1wf9_A NPL4 family protein; be 99.5 4.4E-14 1.5E-18 113.3 7.2 71 1-75 8-94 (107)
83 2kj6_A Tubulin folding cofacto 99.5 1.4E-13 4.8E-18 108.9 8.7 71 2-75 16-95 (97)
84 1vej_A Riken cDNA 4931431F19; 99.4 1.2E-13 4E-18 103.9 6.6 47 168-217 25-72 (74)
85 2xzm_9 RPS31E; ribosome, trans 99.4 8E-15 2.7E-19 129.0 0.0 70 1-78 1-70 (189)
86 1v6e_A Cytoskeleton-associated 99.4 2.1E-13 7.3E-18 106.9 8.1 73 1-76 8-88 (95)
87 2g3q_A Protein YBL047C; endocy 99.4 1.2E-13 4E-18 93.4 5.7 40 172-214 4-43 (43)
88 2io1_B Small ubiquitin-related 99.4 3.1E-13 1.1E-17 106.2 8.6 76 1-79 8-83 (94)
89 1vg5_A RSGI RUH-014, rhomboid 99.4 1.5E-13 5.2E-18 103.1 6.1 44 169-215 26-69 (73)
90 2bwb_A Ubiquitin-like protein 99.4 1.7E-13 5.9E-18 94.0 5.0 41 170-213 5-46 (46)
91 2kzr_A Ubiquitin thioesterase 99.4 3.1E-13 1.1E-17 104.0 6.9 71 1-75 1-77 (86)
92 1wm3_A Ubiquitin-like protein 99.4 1.4E-12 4.7E-17 97.3 9.3 71 1-74 2-72 (72)
93 2knz_A Ubiquilin-4; cytoplasm, 99.4 4.3E-13 1.5E-17 94.7 5.5 43 170-215 9-52 (53)
94 2io0_B Small ubiquitin-related 99.4 2.1E-12 7.3E-17 100.9 9.5 75 1-78 6-80 (91)
95 1t0y_A Tubulin folding cofacto 99.4 1.7E-12 5.8E-17 106.4 8.9 74 1-77 7-88 (122)
96 3a4r_A Nfatc2-interacting prot 99.4 4.4E-12 1.5E-16 96.4 10.3 70 1-73 8-78 (79)
97 1veg_A NEDD8 ultimate buster-1 99.4 8.3E-13 2.9E-17 101.2 6.2 45 172-219 29-76 (83)
98 2jy5_A Ubiquilin-1; UBA, alter 99.3 1.2E-12 4.2E-17 92.0 6.3 42 169-213 9-51 (52)
99 3shq_A UBLCP1; phosphatase, hy 99.3 7.6E-13 2.6E-17 125.3 6.1 72 1-76 6-80 (320)
100 2d07_B Ubiquitin-like protein 99.3 4.8E-12 1.7E-16 99.1 9.1 74 1-77 18-91 (93)
101 1wji_A Tudor domain containing 99.3 3.2E-12 1.1E-16 93.3 6.6 42 172-216 9-50 (63)
102 1wz0_A Ubiquitin-like protein 99.3 5.7E-12 2E-16 100.8 8.5 75 1-78 25-99 (104)
103 1wr1_B Ubiquitin-like protein 99.3 1.9E-12 6.6E-17 92.9 5.1 42 169-213 14-56 (58)
104 2dna_A Unnamed protein product 99.3 2.8E-12 9.5E-17 94.4 6.0 46 169-217 16-62 (67)
105 2dak_A Ubiquitin carboxyl-term 99.3 2.6E-12 8.7E-17 93.8 4.2 43 172-217 9-51 (63)
106 2k8h_A Small ubiquitin protein 99.3 9.6E-12 3.3E-16 100.5 7.7 75 1-78 27-101 (110)
107 2eke_C Ubiquitin-like protein 99.2 1.7E-11 5.9E-16 98.4 8.4 73 1-77 32-104 (106)
108 1wiv_A UBP14, ubiquitin-specif 99.2 1.1E-11 3.7E-16 93.1 5.9 41 172-215 29-69 (73)
109 2f4m_B UV excision repair prot 99.2 5.8E-12 2E-16 91.2 3.7 33 275-307 2-34 (61)
110 1z96_A DNA-damage, UBA-domain 99.2 1.3E-11 4.4E-16 81.6 5.0 39 170-211 2-40 (40)
111 2dag_A Ubiquitin carboxyl-term 99.2 1.5E-11 5.2E-16 92.5 6.0 43 172-217 9-52 (74)
112 2crn_A Ubash3A protein; compac 99.2 7.5E-12 2.6E-16 91.6 4.0 45 170-217 7-52 (64)
113 1whc_A RSGI RUH-027, UBA/UBX 3 99.2 9.7E-12 3.3E-16 91.1 4.3 42 173-217 10-52 (64)
114 1pve_A HHR23B, UV excision rep 99.2 2.7E-12 9.1E-17 95.7 0.8 34 274-307 3-36 (72)
115 2ekk_A UBA domain from E3 ubiq 99.2 1.9E-11 6.5E-16 84.0 4.8 38 172-213 9-46 (47)
116 2cpw_A CBL-interacting protein 99.2 1.5E-11 5E-16 90.1 4.4 40 173-215 20-60 (64)
117 1wjn_A Tubulin-folding protein 99.1 1.2E-10 4E-15 91.4 8.2 72 2-76 11-93 (97)
118 2dai_A Ubadc1, ubiquitin assoc 99.1 8.2E-11 2.8E-15 90.4 5.8 43 172-217 29-71 (83)
119 1vek_A UBP14, ubiquitin-specif 99.1 1.1E-10 3.6E-15 90.0 5.9 43 172-217 29-72 (84)
120 1wgn_A UBAP1, ubiquitin associ 99.1 1.7E-10 5.8E-15 82.7 5.1 38 173-213 20-57 (63)
121 2dah_A Ubiquilin-3; UBA domain 99.0 2.1E-10 7E-15 81.2 5.0 41 171-214 8-49 (54)
122 2lbc_A Ubiquitin carboxyl-term 99.0 2.6E-10 8.8E-15 94.0 5.9 41 172-215 78-118 (126)
123 2cwb_A Chimera of immunoglobul 99.0 3.4E-10 1.2E-14 90.8 5.9 43 170-215 64-107 (108)
124 3kyd_D Small ubiquitin-related 99.0 1.4E-09 4.9E-14 88.3 9.7 73 1-76 41-113 (115)
125 2dkl_A Trinucleotide repeat co 98.9 9.6E-10 3.3E-14 84.8 5.6 38 173-213 22-59 (85)
126 1dv0_A DNA repair protein HHR2 98.8 8.8E-10 3E-14 75.8 1.3 41 171-214 3-43 (47)
127 3pge_A SUMO-modified prolifera 98.8 2.3E-08 7.9E-13 88.5 9.5 76 1-80 30-105 (200)
128 3tix_A Ubiquitin-like protein 98.7 1.3E-08 4.6E-13 89.2 7.0 74 1-78 58-131 (207)
129 2ooa_A E3 ubiquitin-protein li 98.7 1.9E-08 6.4E-13 69.7 5.1 38 172-212 11-48 (52)
130 2d9s_A CBL E3 ubiquitin protei 98.6 3.4E-08 1.2E-12 68.7 5.3 38 172-212 9-46 (53)
131 4ae4_A Ubiquitin-associated pr 98.6 2.1E-08 7.2E-13 81.8 4.8 39 172-213 76-114 (118)
132 2pjh_A Protein NPL4, nuclear p 98.6 2.1E-08 7.1E-13 76.3 4.1 69 1-73 5-78 (80)
133 3goe_A DNA repair protein RAD6 98.6 2.2E-07 7.7E-12 69.9 9.4 70 2-74 11-81 (82)
134 2jxx_A Nfatc2-interacting prot 98.5 4.2E-07 1.4E-11 71.6 9.5 70 1-73 26-96 (97)
135 2oo9_A E3 ubiquitin-protein li 98.5 1.3E-07 4.6E-12 63.6 5.6 41 169-212 1-41 (46)
136 3v7o_A Minor nucleoprotein VP3 98.5 1.7E-08 5.7E-13 89.7 0.0 74 1-78 22-95 (227)
137 3k9o_A Ubiquitin-conjugating e 98.5 1.2E-07 4.3E-12 83.8 5.1 43 167-212 158-200 (201)
138 2juj_A E3 ubiquitin-protein li 98.4 2.4E-07 8.1E-12 64.7 5.0 40 171-213 6-45 (56)
139 2qsf_X RAD23, UV excision repa 98.4 1.1E-07 3.6E-12 82.2 2.8 32 276-307 25-56 (171)
140 1wj7_A Hypothetical protein (R 98.3 6.2E-07 2.1E-11 71.1 6.1 44 170-216 37-81 (104)
141 2l76_A Nfatc2-interacting prot 98.3 2.6E-06 8.9E-11 66.6 9.5 72 1-76 22-93 (95)
142 4ae4_A Ubiquitin-associated pr 98.2 9.6E-07 3.3E-11 71.9 5.3 40 171-213 7-46 (118)
143 2cp8_A NEXT to BRCA1 gene 1 pr 98.2 1.2E-06 4E-11 61.6 4.6 43 168-213 5-48 (54)
144 3uf8_A Ubiquitin-like protein 98.2 3.8E-06 1.3E-10 74.6 8.1 73 2-78 23-95 (209)
145 2lbc_A Ubiquitin carboxyl-term 98.1 1.4E-06 4.8E-11 71.4 3.9 41 173-216 4-45 (126)
146 2qsf_X RAD23, UV excision repa 98.1 2.8E-06 9.6E-11 73.3 4.7 41 170-213 128-168 (171)
147 4efo_A Serine/threonine-protei 98.1 1.5E-05 5.1E-10 62.3 8.1 63 9-74 22-87 (94)
148 2bps_A YUKD protein; ubiquitin 98.0 1.1E-05 3.6E-10 61.5 6.3 70 2-72 6-80 (81)
149 3ix6_A TS, tsase, thymidylate 98.0 8.2E-07 2.8E-11 84.9 0.0 74 1-78 22-95 (360)
150 2kc2_A Talin-1, F1; FERM, adhe 97.9 2E-05 7E-10 64.9 7.2 69 2-73 13-120 (128)
151 2al3_A TUG long isoform; TUG U 97.9 5.7E-05 2E-09 58.4 8.6 74 1-77 10-83 (90)
152 4da1_A Protein phosphatase 1K, 97.8 2.7E-06 9.2E-11 81.9 0.0 73 2-78 32-104 (389)
153 2cos_A Serine/threonine protei 97.8 2.7E-05 9.3E-10 54.2 5.0 37 172-211 9-46 (54)
154 1oqy_A HHR23A, UV excision rep 97.8 4.6E-06 1.6E-10 80.2 1.4 41 170-213 323-363 (368)
155 3e46_A Ubiquitin-conjugating e 97.5 7.6E-05 2.6E-09 68.2 5.3 43 167-212 210-252 (253)
156 3qx1_A FAS-associated factor 1 97.5 0.00048 1.6E-08 52.1 8.0 68 2-73 9-81 (84)
157 2dzk_A UBX domain-containing p 97.4 0.0018 6E-08 51.6 10.8 71 2-75 15-90 (109)
158 1wj4_A KIAA0794 protein; UBX d 96.9 0.0025 8.7E-08 51.9 7.2 69 2-74 45-118 (124)
159 2cr5_A Reproduction 8; UBX dom 96.6 0.017 5.7E-07 45.8 9.8 68 2-73 25-96 (109)
160 1s3s_G P47 protein; AAA ATPase 96.5 0.01 3.4E-07 48.5 8.3 65 2-68 54-121 (127)
161 1wgl_A TOLL-interacting protei 96.4 0.0034 1.2E-07 44.7 4.3 40 171-213 8-49 (59)
162 2pwq_A Ubiquitin conjugating e 96.4 0.00054 1.9E-08 61.1 0.0 41 171-214 176-216 (216)
163 2daj_A KIAA0977 protein, COBL- 96.4 0.02 6.8E-07 43.7 8.4 70 2-77 12-84 (91)
164 4e71_A Plexin-B2, MM1; transme 96.3 0.029 9.9E-07 44.8 9.5 64 10-74 23-109 (111)
165 2di0_A Activating signal coint 96.0 0.022 7.5E-07 42.0 7.0 51 166-219 7-60 (71)
166 2dhy_A CUE domain-containing p 96.0 0.014 4.9E-07 42.5 5.8 45 168-213 14-58 (67)
167 1otr_A Protein CUE2; protein-p 95.9 0.012 4.3E-07 40.2 4.8 39 172-213 4-44 (49)
168 2r2o_A Plexin-B1; effector dom 95.8 0.041 1.4E-06 45.5 8.4 65 11-76 41-129 (138)
169 2l32_A Small archaeal modifier 95.7 0.028 9.7E-07 41.5 6.8 60 1-73 1-60 (74)
170 1ryj_A Unknown; beta/alpha pro 95.5 0.088 3E-06 38.1 8.6 61 1-74 5-65 (70)
171 3ihp_A Ubiquitin carboxyl-term 95.5 0.011 3.9E-07 62.3 5.2 41 170-213 718-758 (854)
172 4a3p_A Ubiquitin carboxyl-term 95.4 0.082 2.8E-06 46.7 9.8 62 12-76 141-209 (217)
173 3jyu_A Ubiquitin carboxyl-term 94.9 0.15 5.2E-06 45.4 10.0 62 13-77 154-222 (231)
174 3h6n_A Plexin-D1; structural g 94.8 0.15 5.1E-06 41.6 8.8 66 9-75 15-104 (127)
175 2cp9_A EF-TS, EF-TSMT, elongat 94.6 0.059 2E-06 38.9 5.2 35 174-211 11-46 (64)
176 4e74_A Plexin-A4; RBD, structu 94.5 0.12 4.2E-06 41.6 7.5 65 11-76 27-115 (117)
177 1vjk_A Molybdopterin convertin 94.3 0.28 9.5E-06 37.6 9.0 68 1-73 10-92 (98)
178 3ivf_A Talin-1; FERM domain, c 93.9 0.18 6.2E-06 47.6 8.7 71 2-73 5-82 (371)
179 3rpf_C Molybdopterin convertin 93.6 0.19 6.6E-06 36.5 6.5 65 1-73 1-68 (74)
180 3po0_A Small archaeal modifier 91.6 1.8 6.1E-05 32.1 9.8 56 11-73 18-83 (89)
181 2juo_A GA-binding protein alph 91.4 0.55 1.9E-05 35.6 6.5 62 13-77 5-66 (89)
182 1tyg_B YJBS; alpha beta barrel 91.0 0.31 1.1E-05 37.0 4.9 57 8-74 25-82 (87)
183 1ef1_A Moesin; membrane, FERM 90.5 1.1 3.9E-05 40.4 9.2 74 1-78 2-81 (294)
184 1ip9_A BEM1 protein; ubiquitin 90.5 0.41 1.4E-05 36.3 5.1 43 2-50 14-57 (85)
185 4dbg_B Ring finger protein 31; 90.4 0.22 7.7E-06 42.0 3.9 38 171-210 101-138 (162)
186 3ihp_A Ubiquitin carboxyl-term 90.2 0.21 7.1E-06 52.7 4.4 41 173-216 653-694 (854)
187 1h4r_A Merlin; FERM, neurofibr 90.2 1.3 4.4E-05 40.5 9.3 74 1-78 23-101 (314)
188 1oey_A P67-PHOX, neutrophil cy 89.9 0.55 1.9E-05 35.5 5.4 44 2-50 7-50 (83)
189 3kuz_A Plexin-C1; structural g 89.9 0.95 3.2E-05 36.8 7.1 60 11-73 39-124 (126)
190 3hm6_X Plexin-B1; structural g 89.3 1.1 3.8E-05 45.4 8.7 65 11-76 274-362 (644)
191 1q02_A Sequestosome 1; helical 88.8 0.3 1E-05 33.6 2.9 38 170-210 8-47 (52)
192 3dwg_C 9.5 kDa culture filtrat 88.7 1.3 4.5E-05 33.2 6.8 72 1-74 1-88 (93)
193 2kmm_A Guanosine-3',5'-BIS(dip 88.4 1.1 3.7E-05 31.8 5.9 63 1-75 1-63 (73)
194 1f0z_A THis protein; ubiquitin 88.4 0.63 2.2E-05 32.9 4.6 61 1-74 1-61 (66)
195 3ig3_A Plxna3 protein; plexin 88.4 1.8 6.1E-05 43.8 9.4 65 11-76 247-335 (627)
196 2i1j_A Moesin; FERM, coiled-co 87.9 1.5 5.2E-05 44.1 8.7 75 1-79 5-85 (575)
197 1wgk_A Riken cDNA 2900073H19 p 87.7 0.61 2.1E-05 37.1 4.6 69 1-74 12-103 (114)
198 2k5p_A THis protein, thiamine- 87.6 0.65 2.2E-05 34.4 4.4 63 1-74 1-64 (78)
199 3ivf_A Talin-1; FERM domain, c 86.8 2.4 8.3E-05 39.7 9.0 72 2-75 87-167 (371)
200 2kl0_A Putative thiamin biosyn 86.6 0.67 2.3E-05 33.8 3.9 60 1-74 1-60 (73)
201 3qij_A Protein 4.1; cytoskelet 86.3 2.8 9.6E-05 38.2 8.9 71 1-73 18-93 (296)
202 1tte_A Ubiquitin-conjugating e 84.9 0.6 2E-05 41.3 3.4 23 173-198 170-192 (215)
203 2k9x_A Tburm1, uncharacterized 84.7 0.26 8.8E-06 39.1 0.9 69 1-74 5-97 (110)
204 2q5w_D Molybdopterin convertin 84.2 2.2 7.5E-05 30.6 5.8 54 11-73 16-71 (77)
205 2l52_A Methanosarcina acetivor 83.6 4.1 0.00014 31.0 7.4 67 1-73 4-93 (99)
206 2qjl_A URM1, ubiquitin-related 83.6 1.7 5.7E-05 33.2 5.1 68 1-73 2-93 (99)
207 1ixs_A Holliday junction DNA h 82.9 1.1 3.7E-05 31.8 3.4 29 168-199 13-41 (62)
208 3onh_A Ubiquitin-activating en 82.6 3.8 0.00013 33.2 7.0 58 14-75 9-79 (127)
209 1wgr_A Growth factor receptor- 81.8 5.3 0.00018 31.0 7.3 74 3-78 12-95 (100)
210 1vd2_A Protein kinase C, IOTA 81.7 4 0.00014 31.1 6.5 45 2-50 8-53 (89)
211 1ufz_A Hypothetical protein BA 80.8 3.8 0.00013 30.8 5.9 42 172-213 34-75 (83)
212 1y8x_B Ubiquitin-activating en 80.5 1.3 4.3E-05 34.5 3.3 59 12-73 6-82 (98)
213 2cu3_A Unknown function protei 79.2 2.3 7.8E-05 29.8 4.1 56 8-74 4-59 (64)
214 2ns5_A Partitioning-defective 78.2 18 0.00062 27.2 9.0 72 1-74 3-81 (85)
215 1p3q_Q VPS9P, vacuolar protein 77.1 1 3.5E-05 31.2 1.7 40 170-212 10-51 (54)
216 1fm0_D Molybdopterin convertin 76.5 9.8 0.00033 27.2 7.1 57 11-73 17-75 (81)
217 1aip_C EF-TS, elongation facto 74.5 3.9 0.00013 35.6 5.1 37 173-212 4-41 (196)
218 1xb2_B EF-TS, elongation facto 72.8 4.1 0.00014 37.6 5.1 36 174-212 6-42 (291)
219 2g1e_A Hypothetical protein TA 72.3 11 0.00036 27.6 6.5 58 15-73 19-84 (90)
220 4eut_A Serine/threonine-protei 72.1 14 0.00047 34.2 8.7 53 10-65 321-375 (396)
221 1tr8_A Conserved protein (MTH1 71.1 5 0.00017 31.3 4.5 36 173-211 66-102 (102)
222 1v92_A NSFL1 cofactor P47; 3-h 70.6 10 0.00035 24.4 5.3 37 172-211 5-42 (46)
223 1rws_A Hypothetical protein PF 70.5 1.5 5.2E-05 31.9 1.3 48 14-73 24-71 (77)
224 1wgy_A RAP guanine nucleotide 70.3 15 0.00053 28.6 7.1 68 5-75 14-86 (104)
225 2kvr_A Ubiquitin carboxyl-term 70.1 3.8 0.00013 33.2 3.7 32 14-48 59-90 (130)
226 3qa8_A MGC80376 protein; kinas 69.9 4.6 0.00016 41.4 5.2 52 9-63 320-372 (676)
227 2hj1_A Hypothetical protein; s 69.5 6.5 0.00022 30.3 4.8 60 10-74 25-84 (97)
228 4g3o_A E3 ubiquitin-protein li 68.7 11 0.00037 26.4 5.3 44 166-213 11-56 (58)
229 1q1o_A Cell division control p 68.1 11 0.00037 29.2 5.8 26 10-35 22-47 (98)
230 2kmc_A Fermitin family homolog 68.1 40 0.0014 26.1 9.4 71 2-75 21-99 (102)
231 2inc_C TOUB protein; DIIRON, 4 65.7 32 0.0011 25.7 7.7 62 13-75 15-82 (83)
232 3hvz_A Uncharacterized protein 64.8 18 0.00062 26.5 6.3 63 2-76 7-69 (78)
233 3w1s_C Ubiquitin-like protein 63.0 40 0.0014 25.5 8.1 58 14-76 26-86 (91)
234 3ge3_C Toluene-4-monooxygenase 62.9 37 0.0013 25.4 7.6 61 13-74 17-82 (84)
235 2ylm_A Ubiquitin carboxyl-term 62.4 23 0.00079 35.0 8.5 58 12-72 353-418 (530)
236 2dal_A Protein KIAA0794; FAS a 61.9 12 0.00042 26.1 4.7 39 171-212 14-53 (62)
237 4dbg_B Ring finger protein 31; 61.6 6.9 0.00024 32.9 3.8 28 184-211 72-99 (162)
238 2c7h_A RBBP6, retinoblastoma-b 61.3 20 0.00068 27.0 5.9 34 2-35 8-43 (86)
239 2lnm_A Protein TIC 40, chlorop 58.4 8.7 0.0003 26.8 3.3 29 277-305 14-42 (62)
240 4a6q_A Histone deacetylase com 58.4 48 0.0016 27.3 8.3 64 12-77 55-140 (143)
241 2zjd_A Microtubule-associated 58.3 38 0.0013 27.3 7.6 57 16-75 58-119 (130)
242 3au4_A Myosin-X; protein-prote 57.6 19 0.00065 35.4 6.9 58 1-61 217-280 (555)
243 2r2q_A Gamma-aminobutyric acid 56.8 36 0.0012 26.5 7.0 57 16-75 49-109 (110)
244 2eel_A Cell death activator CI 56.8 62 0.0021 24.5 8.8 50 21-76 28-79 (91)
245 1eo6_A GATE-16, golgi-associat 56.6 42 0.0014 26.4 7.5 58 16-76 50-111 (117)
246 3rui_B Autophagy-related prote 56.4 47 0.0016 26.2 7.8 59 15-76 51-113 (118)
247 3u52_E Phenol hydroxylase comp 55.8 43 0.0015 26.7 7.3 62 12-73 39-107 (119)
248 3h9d_A ATG8, microtubule-assoc 54.8 56 0.0019 25.9 8.0 58 16-76 53-114 (119)
249 3e7l_A Transcriptional regulat 54.0 19 0.00064 24.7 4.5 42 164-215 4-45 (63)
250 2kna_A Baculoviral IAP repeat- 53.7 15 0.0005 28.5 4.3 36 175-213 30-72 (104)
251 2dhz_A RAP guanine nucleotide 53.4 34 0.0012 27.3 6.4 65 8-75 17-92 (120)
252 1f2r_I Inhibitor of caspase-ac 52.8 19 0.00066 27.9 4.7 49 21-75 37-89 (100)
253 4gdk_A Ubiquitin-like protein 52.6 46 0.0016 25.0 6.8 60 14-76 23-86 (91)
254 3m95_A Autophagy related prote 51.9 54 0.0018 26.2 7.5 58 16-76 58-119 (125)
255 1zoq_C CREB-binding protein, i 50.5 13 0.00043 24.7 2.8 23 284-306 17-39 (47)
256 2ekf_A Ancient ubiquitous prot 48.8 39 0.0013 23.8 5.4 41 169-213 10-52 (61)
257 3cz6_A DNA-binding protein RAP 46.8 21 0.00073 30.1 4.4 46 170-218 61-113 (168)
258 1v8c_A MOAD related protein; r 46.8 55 0.0019 27.3 7.1 56 14-73 17-81 (168)
259 2ejs_A Autocrine motility fact 45.5 52 0.0018 22.9 5.6 41 169-213 10-52 (58)
260 3pvl_A Myosin VIIA isoform 1; 44.9 43 0.0015 34.0 7.3 46 1-48 264-309 (655)
261 1wz3_A Autophagy 12B, ATG12B, 44.8 48 0.0016 25.2 5.9 58 14-76 31-91 (96)
262 2llw_A Heat shock protein STI1 43.5 19 0.00063 26.1 3.1 29 277-305 22-50 (71)
263 1vdl_A Ubiquitin carboxyl-term 43.2 62 0.0021 23.8 5.8 41 172-213 24-64 (80)
264 2ylm_A Ubiquitin carboxyl-term 42.4 24 0.00082 34.9 4.8 70 2-74 132-216 (530)
265 4gmv_A RAS-associated and plec 39.3 1.1E+02 0.0037 27.7 8.3 69 3-73 34-112 (281)
266 3hk0_A Growth factor receptor- 38.7 63 0.0022 28.9 6.6 57 3-62 11-74 (256)
267 2ztd_A Holliday junction ATP-d 38.1 18 0.0006 31.7 2.7 26 172-200 164-189 (212)
268 3r8s_T 50S ribosomal protein L 36.9 73 0.0025 24.1 5.7 40 10-52 27-67 (93)
269 1g2h_A Transcriptional regulat 36.0 17 0.00058 24.9 1.9 26 187-215 21-46 (61)
270 2dzl_A Protein FAM100B; UBA-li 35.9 77 0.0026 22.3 5.4 38 172-212 16-55 (66)
271 2dam_A ETEA protein; KIAA0887, 35.7 76 0.0026 22.3 5.3 43 170-213 16-58 (67)
272 2nvu_B Maltose binding protein 35.5 51 0.0017 33.9 6.1 60 13-73 714-789 (805)
273 1cuk_A RUVA protein; DNA repai 35.3 21 0.00071 30.9 2.7 25 172-199 160-184 (203)
274 2cu1_A Mitogen-activated prote 34.5 75 0.0025 24.6 5.4 44 3-52 9-53 (103)
275 4fp9_B Mterf domain-containing 33.8 29 0.00098 32.4 3.6 43 170-215 44-91 (335)
276 3m8j_A FOCB protein; all-alpha 31.8 49 0.0017 26.0 4.1 41 164-216 23-63 (111)
277 1umq_A Photosynthetic apparatu 31.7 29 0.001 25.5 2.6 27 187-215 41-67 (81)
278 1oai_A Nuclear RNA export fact 30.4 1.2E+02 0.0041 20.8 5.5 44 171-217 6-55 (59)
279 1n62_A Carbon monoxide dehydro 29.9 39 0.0013 28.2 3.5 27 2-29 5-31 (166)
280 3lxf_A Ferredoxin; iron, iron- 29.7 56 0.0019 24.7 4.1 27 2-28 2-28 (104)
281 1j0g_A Hypothetical protein 18 29.6 1.7E+02 0.006 21.7 6.5 61 14-77 27-88 (92)
282 3hrd_D Nicotinate dehydrogenas 29.4 39 0.0013 28.1 3.4 27 1-28 4-30 (160)
283 1ibx_B Chimera of IGG binding 29.2 29 0.00099 28.6 2.4 49 21-75 82-134 (145)
284 2qho_B E3 ubiquitin-protein li 28.5 1.4E+02 0.0047 20.1 5.4 37 173-212 10-48 (53)
285 3e21_A HFAF1, FAS-associated f 28.2 94 0.0032 20.3 4.4 35 171-208 4-40 (45)
286 2ktr_A Sequestosome-1; autopha 28.1 1E+02 0.0035 24.4 5.4 54 21-76 57-116 (117)
287 2lgx_A Fermitin family homolog 28.1 28 0.00095 27.4 2.0 68 3-74 29-101 (112)
288 4eku_A Protein-tyrosine kinase 28.1 85 0.0029 29.7 5.9 55 8-62 35-97 (392)
289 2l9b_A MRNA 3'-END-processing 28.0 28 0.00095 27.4 2.0 19 288-306 71-89 (109)
290 2jrh_A Mitogen-activated prote 28.0 1.2E+02 0.0042 22.9 5.5 45 3-53 5-50 (94)
291 1t3q_A Quinoline 2-oxidoreduct 27.9 44 0.0015 27.8 3.4 28 1-29 10-37 (168)
292 3tve_T 50S ribosomal protein L 27.8 1E+02 0.0035 23.2 5.2 40 10-52 21-61 (92)
293 2yrv_A AT-rich interactive dom 27.4 30 0.001 27.5 2.1 26 192-220 78-104 (117)
294 2kw6_A Cyclin-dependent kinase 27.4 30 0.001 24.6 1.9 36 169-214 10-45 (65)
295 2kkc_A Sequestosome-1; P62, PB 26.9 1.3E+02 0.0045 23.1 5.7 54 21-76 42-101 (102)
296 1pqs_A Cell division control p 26.7 50 0.0017 24.1 3.1 36 12-50 3-43 (77)
297 1ffv_A CUTS, iron-sulfur prote 26.4 50 0.0017 27.5 3.5 27 2-29 5-31 (163)
298 2v1y_A Phosphatidylinositol-4, 25.9 91 0.0031 24.3 4.7 67 5-74 24-103 (108)
299 3tca_A Amyloid beta A4 precurs 24.4 1.4E+02 0.0048 25.8 6.4 33 3-35 37-69 (291)
300 3kvh_A Protein syndesmos; NUDT 24.4 77 0.0026 27.7 4.3 42 168-211 162-203 (214)
301 2llv_A Heat shock protein STI1 24.3 26 0.00089 25.1 1.1 26 280-305 28-54 (71)
302 1ixr_A Holliday junction DNA h 23.1 17 0.0006 31.1 0.0 26 172-200 146-171 (191)
303 2zjr_Q 50S ribosomal protein L 23.0 85 0.0029 23.8 3.9 37 12-51 24-61 (95)
304 1eto_A FIS, factor for inversi 22.6 51 0.0017 25.0 2.6 27 187-215 58-84 (98)
305 3k6g_A Telomeric repeat-bindin 22.4 1.3E+02 0.0044 23.4 4.8 43 169-214 11-53 (111)
306 3t6p_A Baculoviral IAP repeat- 21.9 53 0.0018 30.6 3.1 21 174-197 121-141 (345)
307 2c60_A Human mitogen-activated 21.8 1.7E+02 0.0058 22.7 5.3 44 3-52 32-76 (111)
308 2jx5_A GLUB(S27A); ubiquitin, 21.7 2E+02 0.007 19.8 6.8 51 1-59 1-51 (69)
309 3chb_D Cholera toxin; toxin/re 21.5 1.1E+02 0.0036 23.0 4.0 32 3-34 39-70 (104)
310 2cs4_A Protein C12ORF2; GTP bi 21.4 1E+02 0.0035 23.5 4.0 58 16-78 23-88 (95)
311 2npt_B Mitogen-activated prote 21.3 2.4E+02 0.0081 21.6 6.0 42 3-50 21-63 (100)
312 2l9b_A MRNA 3'-END-processing 21.2 48 0.0016 26.0 2.2 23 286-308 58-80 (109)
313 1rm6_C 4-hydroxybenzoyl-COA re 21.0 60 0.0021 26.8 3.0 27 3-30 5-31 (161)
314 2nnz_A Hypothetical protein; b 21.0 40 0.0014 27.9 1.8 29 1-30 30-61 (153)
315 1kbh_B CREB-binding protein, n 21.0 42 0.0014 23.3 1.6 18 287-304 27-44 (59)
316 1wmh_B Partitioning defective- 20.1 2.4E+02 0.0081 21.0 5.8 45 3-50 7-54 (86)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=1e-53 Score=412.28 Aligned_cols=260 Identities=32% Similarity=0.561 Sum_probs=169.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||+++|++|.|+|++++||.+||++|+.++|+..+++++|||||+||+|+|+++|++|||++|++|++|+++.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999532222999999999999999999999999999999997777776654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 021760 81 SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG 160 (308)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (308)
+.....++..+.+++++ .++.+ ......+++...+... ..++ .....+..+|.......+..+....++
T Consensus 88 ~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~ 156 (368)
T 1oqy_A 88 QGTSAPPEASPTAAPES---STSFP---PAPTSGMSHPPPAARE--DKSP---SEESAPTTSPESVSGSVPSSGSSGREE 156 (368)
T ss_dssp SCCCCCSSCCCCCSSSC---CCSCC---CSSSCCCCCCCSSSSC--CCCC---SCSCCCCSSTTCSCCCSCSCCCSCCCC
T ss_pred CCCCCCcccCCCCCccc---cCCCC---CCCCCCCCCCCccccc--cCCc---cccCCCCCCCCcccccccccccccccc
Confidence 33111111011110100 00000 0000000000000000 0000 000000001111001111111223456
Q ss_pred ccccccccCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCCCCCCCCccccCCCCCCCCCCCccc
Q 021760 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240 (308)
Q Consensus 161 ~~~s~l~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (308)
.+.|+||+|+++|++|++||+|| |+|++|++|||++|||+|||||||++|||++.+.... .+. ...
T Consensus 157 ~~~s~l~~g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~----------~~~-~~~ 222 (368)
T 1oqy_A 157 DAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG----------SVQ-ESQ 222 (368)
T ss_dssp CCCTTTCCTTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC----------CCC-CCC
T ss_pred cccccccCCcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC----------Ccc-ccc
Confidence 77899999999999999999999 9999999999999999999999999999987442210 000 000
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchHHhhChHHHHHHHHHHHhChhhHHHHHhcC
Q 021760 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQQWALIV 307 (308)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~lf~~a~~~~~~~~~~~~l~~Lr~~pqf~~lRq~vqqnP~~L~~~L~~~ 307 (308)
. .... +.++++.++|+|||++|||++||++||+||++|++|||+|
T Consensus 223 --~----~~~~----------------~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l 267 (368)
T 1oqy_A 223 --V----SEQP----------------ATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQL 267 (368)
T ss_dssp --S----SCCC----------------CSSCCSCCTTHHHHHSHHHHHHHHSTTTCTTHHHHHHTTT
T ss_pred --c----cccc----------------CccccccchHHHHhcChHHHHHHHHHHhChHHHHHHHHHH
Confidence 0 0000 1122356799999999999999999999999999999986
No 2
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.3e-20 Score=149.89 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||+++|+.|.|+|++++||.+||++|+...| +++++|||||+||+|+|+++|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999977644
No 3
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=4.4e-19 Score=139.37 Aligned_cols=77 Identities=44% Similarity=0.705 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~---~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|+.|.++|++++||.+||++|+.. .| +++++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCC
Q 021760 78 KVS 80 (308)
Q Consensus 78 k~~ 80 (308)
+..
T Consensus 78 ~~~ 80 (95)
T 1uel_A 78 KAV 80 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 4
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.80 E-value=1.9e-19 Score=139.42 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+||+++|++|.|+|++++||.+||++|+.++| +++++|||||+||.|+|+++|++|+| +|++|||+++.+..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 89999999986543
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=135.02 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|++|.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+++++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999865
No 6
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.79 E-value=2.7e-19 Score=138.63 Aligned_cols=78 Identities=35% Similarity=0.518 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987654
Q ss_pred C
Q 021760 81 S 81 (308)
Q Consensus 81 ~ 81 (308)
.
T Consensus 78 ~ 78 (88)
T 4fbj_B 78 G 78 (88)
T ss_dssp -
T ss_pred C
Confidence 4
No 7
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.79 E-value=4.8e-19 Score=135.25 Aligned_cols=76 Identities=36% Similarity=0.640 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~---~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|+.|.++|++++||.+||++|+.. .| +++++|||+|+||.|+|+++|++|||++|++|||+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 67 999999999999999999999999999999999999876
Q ss_pred CC
Q 021760 78 KV 79 (308)
Q Consensus 78 k~ 79 (308)
++
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 54
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.78 E-value=5e-19 Score=137.67 Aligned_cols=74 Identities=39% Similarity=0.646 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|++|.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+|+++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998864
No 9
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=5.3e-19 Score=136.26 Aligned_cols=72 Identities=36% Similarity=0.517 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEe-cCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV-LKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKi-L~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|+|+||++.|+.|.|+|++++||.+||++|+...| +|+++|||+|+||. |+|+++|++|||++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 10
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.77 E-value=5e-19 Score=140.60 Aligned_cols=74 Identities=27% Similarity=0.459 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCcHHHHHHHH-HHHhCCCCCCCCCeEEEeCCEecCCCCChhhhcc-CCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEI--EVKPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~l--eV~~~~TV~~LK~~I-~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygI-k~g~~I~v~v~k 76 (308)
|+|+||+++|++|.+ +|++++||.+||++| +...| +++++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 77778 99999999999999999999999999 999999999987
Q ss_pred C
Q 021760 77 S 77 (308)
Q Consensus 77 ~ 77 (308)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 11
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.9e-18 Score=138.34 Aligned_cols=76 Identities=26% Similarity=0.324 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||+.+|+ |.|+|++++||.+||++|+..+| +++++|||+|+||+|+|+++|++|+|++|++|||+++++..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 78999998885 89999999999999999999999 999999999999999999999999999999999999876543
No 12
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.77 E-value=8.5e-19 Score=137.53 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|+|++|++|+++.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999863
No 13
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.77 E-value=1.9e-18 Score=135.07 Aligned_cols=77 Identities=36% Similarity=0.589 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||+++|+.|.|+|++++||.+||++|+..+| +++++|||+|+||.|+|+++|++|+|++|++|+|+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877543
No 14
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=5.1e-19 Score=137.58 Aligned_cols=74 Identities=28% Similarity=0.455 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCcHHHHHHHH-HHHhCCCCCCCCCeEEEeCCEecCCCCChhhhcc-CCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~--~~~TV~~LK~~I-~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygI-k~g~~I~v~v~k 76 (308)
|+|+||+++|++|.|+|+ +++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| .+|++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988755 999999999999 88889 99999999999999999999999999 699999999875
Q ss_pred C
Q 021760 77 S 77 (308)
Q Consensus 77 ~ 77 (308)
.
T Consensus 79 ~ 79 (87)
T 2lxa_A 79 N 79 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.8e-18 Score=136.59 Aligned_cols=75 Identities=36% Similarity=0.577 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|||+|+||+|+|+++|++|+|++|++|+|+++.+.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998753
No 16
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.76 E-value=3e-18 Score=127.38 Aligned_cols=74 Identities=36% Similarity=0.562 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+.+|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+++++.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998865
No 17
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.76 E-value=1.4e-18 Score=133.36 Aligned_cols=75 Identities=36% Similarity=0.546 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|+.|.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999988653
No 18
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.5e-18 Score=129.31 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHF-EIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~-~le-V~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|+|+||+++|+.+ .++ |++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+++++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7999999999985 999 9999999999999999999 99999999999999999999999999999999999875
No 19
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.75 E-value=5.4e-18 Score=125.94 Aligned_cols=74 Identities=38% Similarity=0.614 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+.+|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|++|++|+++++.+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998865
No 20
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=2.6e-18 Score=130.87 Aligned_cols=76 Identities=36% Similarity=0.546 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+||+++|+++.|+|++++||.+||++|+...+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 21
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=1.4e-18 Score=138.30 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+||++.|+++.|+|++++||.+||++|+++.| +++++|||||.||+|+|+.+|++|||+++++|+|+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999864
No 22
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=129.16 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|+|+||+++|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999875
No 23
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=2.8e-18 Score=137.56 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=72.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+||+++|+.|.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|||++++++.
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987654
No 24
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.75 E-value=2.9e-18 Score=129.47 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|+++.++|++++||.+||++|+++.| +++++|||+|+|+.|+|+++|++|+|++|++|+++++.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999865
No 25
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=7.9e-18 Score=129.83 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=72.1
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKG-THFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~g-k~~~l-eV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++| ++|.| +|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|+++++|||+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7899999999 79999 59999999999999999999 9999999999999999999999999999999999998765
Q ss_pred C
Q 021760 79 V 79 (308)
Q Consensus 79 ~ 79 (308)
.
T Consensus 85 G 85 (89)
T 1wy8_A 85 G 85 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 26
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=131.62 Aligned_cols=71 Identities=30% Similarity=0.411 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++||| +|++||+++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 27
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=4.7e-18 Score=129.27 Aligned_cols=76 Identities=37% Similarity=0.577 Sum_probs=72.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+||+++|++|.|+|++++||.+||++|+...+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987653
No 28
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=6.3e-18 Score=129.70 Aligned_cols=75 Identities=29% Similarity=0.467 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|+.|.++|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 29
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=132.24 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998654
No 30
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=7e-18 Score=131.75 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=70.7
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHh--CCCCCCCCCeEEEeCCEecCCCCChhhh--ccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ--GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk--~~~leV~~~~TV~~LK~~I~~~~--g~~~ip~~~qkLIy~GKiL~D~~tL~dy--gIk~g~~I~v~v 74 (308)
|+|+||+.+++ .+.|+|++++||.+||++|+..+ + +++++|||||+||+|+|+++|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 78999999988 67788889999999999999998 8 999999999999999999999999 999999999998
Q ss_pred ecCCC
Q 021760 75 TKSKV 79 (308)
Q Consensus 75 ~k~k~ 79 (308)
+.+..
T Consensus 85 ~~~gg 89 (93)
T 1wgd_A 85 NVKSG 89 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 31
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=7.2e-18 Score=130.59 Aligned_cols=75 Identities=33% Similarity=0.604 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988654
No 32
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.74 E-value=1.5e-18 Score=120.93 Aligned_cols=49 Identities=57% Similarity=1.000 Sum_probs=47.3
Q ss_pred ccccCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 021760 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (308)
Q Consensus 165 ~l~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~ 216 (308)
+|++|+.+++.|++|++|| |+|++|++|||+++||+|||||||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999 999999999999999999999999999995
No 33
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=7.7e-18 Score=131.90 Aligned_cols=74 Identities=27% Similarity=0.300 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCC-CChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~-~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+||+++|+.|.|+|++++||.+||++|+.. . +++|||||+||+|+|+ ++|++|+|++|++|||++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----~-~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPG-----Q-ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS-----T-TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh-----C-cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 789999999999999999999999999999876 3 7899999999999999 99999999999999999987654
Q ss_pred C
Q 021760 80 S 80 (308)
Q Consensus 80 ~ 80 (308)
.
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=3.9e-18 Score=137.03 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCEecC-CCCChhhhcc
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---------------SQQMLIHQGKVLK-DVTTLEENKV 64 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~---------------~~qkLIy~GKiL~-D~~tL~dygI 64 (308)
|+|+||+++|++|.|+|++++||.+||++|++..+ +++ ++|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 766 4679999999996 6699999999
Q ss_pred CCCCEEEEEEecCCC
Q 021760 65 AENSFVVVMLTKSKV 79 (308)
Q Consensus 65 k~g~~I~v~v~k~k~ 79 (308)
++|++|||+.+.+..
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999998765
No 35
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.74 E-value=6.3e-18 Score=133.37 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||||+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998753
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=1.2e-17 Score=131.17 Aligned_cols=75 Identities=31% Similarity=0.370 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCC-CChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~-~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+||+++| ++.|+|++++||.+||++|+...| +|+++|||+|+||+|+|+ ++|++|||++|++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999888 899999999999999999999999 999999999999999999 99999999999999999987654
No 37
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.73 E-value=1.6e-17 Score=124.20 Aligned_cols=71 Identities=30% Similarity=0.517 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|+|+||+ +|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899998 999999999999999999999999999 9999999999999999999999999999999999865
No 38
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.5e-17 Score=132.33 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=64.5
Q ss_pred EEEEeCC----CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 3 VFVKTLK----GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 3 I~Vktl~----gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|.|+..+ +++|.|+|++++||.+||++|+++.| +|+++|||||+||+|+|++||++|+|++|++|+|| +.+.
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl-~lrg 93 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL-ELKQ 93 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE-CCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE-EECC
Confidence 5666655 77999999999999999999999999 99999999999999999999999999999999555 4443
No 39
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=8e-18 Score=131.95 Aligned_cols=75 Identities=27% Similarity=0.322 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+||+. |+.|.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|++|++|||+++.+..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999988 89999999999999999999999999 99999999999999999999999999999999999887654
No 40
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.72 E-value=2.7e-17 Score=129.49 Aligned_cols=76 Identities=37% Similarity=0.583 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+||+.+|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987643
No 41
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=2e-17 Score=131.59 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=69.8
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCC-CChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKG----THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~g----k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~-~tL~dygIk~g~~I~v~v~ 75 (308)
|+|+||+..+ ++|.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+ ++|++|+|++|++|||+.+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899998754 7999999999999999999999999 999999999999999988 7999999999999999987
Q ss_pred cCCC
Q 021760 76 KSKV 79 (308)
Q Consensus 76 k~k~ 79 (308)
.+..
T Consensus 85 ~~gg 88 (102)
T 1v5o_A 85 DNVG 88 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.72 E-value=2e-17 Score=133.76 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|+.|.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998753
No 43
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.8e-17 Score=131.70 Aligned_cols=76 Identities=26% Similarity=0.324 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||+.+|+ |.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+|+++.+..+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 78999999886 79999999999999999999999 999999999999999999999999999999999999876543
No 44
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=131.09 Aligned_cols=74 Identities=30% Similarity=0.353 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+. |+.|.|+|++++||.+||++|+...| +++++|||+|+||+|+|+++|++|||++|++|+|+++++.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999988 88999999999999999999999999 9999999999999999999999999999999999988654
No 45
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.6e-17 Score=136.02 Aligned_cols=76 Identities=29% Similarity=0.329 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||++ |+.|.|+|++++||.+||++|+...| +++++|||||+||+|+|+++|++|+|++|++|+|+++++...
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 78999998 99999999999999999999999999 999999999999999999999999999999999999876543
No 46
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.55 E-value=6.4e-19 Score=131.80 Aligned_cols=74 Identities=27% Similarity=0.402 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+.+|++|.++|++++||.+||++|+...| +++++|+|+|+||.|+|+++|++|||++|++|+++++.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999865
No 47
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=5.1e-17 Score=132.75 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC---CC--CCCCeEEEeCCEecCCCCChhhhccCCCCE--EEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VY--PASQQMLIHQGKVLKDVTTLEENKVAENSF--VVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~---~i--p~~~qkLIy~GKiL~D~~tL~dygIk~g~~--I~v~ 73 (308)
|+|+||+++|+++.|+|++++||.+||++|+..++.+ .+ ++++|||||.||+|+|+++|++|+|+.+++ |||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 7899999999999999999999999999999954321 14 699999999999999999999999988764 5555
Q ss_pred EecC
Q 021760 74 LTKS 77 (308)
Q Consensus 74 v~k~ 77 (308)
++..
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 5543
No 48
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=3.7e-17 Score=128.01 Aligned_cols=72 Identities=22% Similarity=0.352 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+ |+.+.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|++|++|+|+++.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 7899997 89999999999999999999999999 999999999999999999999999999999999998865
No 49
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.69 E-value=1e-16 Score=138.89 Aligned_cols=77 Identities=35% Similarity=0.549 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|||+++.+...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999977543
No 50
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=8.5e-17 Score=129.13 Aligned_cols=75 Identities=23% Similarity=0.151 Sum_probs=68.8
Q ss_pred CEEEEEeCCC---cEEEEEeC--------C-CCcHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCEecCCCCChhhhccC
Q 021760 1 MKVFVKTLKG---THFEIEVK--------P-EDKVSDVKKNIETVQ--GSDVYPASQ-QMLIHQGKVLKDVTTLEENKVA 65 (308)
Q Consensus 1 M~I~Vktl~g---k~~~leV~--------~-~~TV~~LK~~I~~~~--g~~~ip~~~-qkLIy~GKiL~D~~tL~dygIk 65 (308)
|+|+||+.++ ++|.|+|+ + ++||.+||++|+... | +++++ |||||+||+|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 89999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCCEEEEEEecCC
Q 021760 66 ENSFVVVMLTKSK 78 (308)
Q Consensus 66 ~g~~I~v~v~k~k 78 (308)
+|++|||+++.+.
T Consensus 90 ~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 90 PGSTVHVLRKSWS 102 (107)
T ss_dssp TTCEEEEEESSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999987643
No 51
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=5.3e-17 Score=128.10 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=67.3
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~-~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+|| +.|+.| .|+|++++||.+||++|+..+| +++++|||+|+||+|+|+ +|++|+|++|++|+||.+..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 689999 578999 6999999999999999999999 999999999999999999 99999999999999987654
No 52
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=128.15 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 53
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.68 E-value=7.2e-17 Score=132.03 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=67.8
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccC-------CCCEEEE
Q 021760 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA-------ENSFVVV 72 (308)
Q Consensus 1 M~I~Vktl~gk-~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk-------~g~~I~v 72 (308)
|.|+|+...++ ++.|+|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||+ ++++||+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 77888877776 599999999999999999999999 999999999999999999999999999 6999999
Q ss_pred EEe
Q 021760 73 MLT 75 (308)
Q Consensus 73 ~v~ 75 (308)
++|
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 54
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.68 E-value=7.2e-17 Score=131.78 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=69.4
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCC-------CCEEEE
Q 021760 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE-------NSFVVV 72 (308)
Q Consensus 1 M~I~Vktl~gk-~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~-------g~~I~v 72 (308)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|++||++|||++ +++||+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 78898888777 788999999999999999999999 9999999999999999999999999999 999999
Q ss_pred EEec
Q 021760 73 MLTK 76 (308)
Q Consensus 73 ~v~k 76 (308)
++|.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9986
No 55
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2.4e-16 Score=122.62 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=67.0
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCC-CCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPE-----DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~-----~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D-~~tL~dygIk~g~~I~v~v 74 (308)
|+|+||+ .|+.|.|+|+++ +||.+||++|+...| +|+++|||+|+||.|+| +++|++|+|++|++|||+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999995 999999999999999 99999999999999998 6689999999999999987
Q ss_pred ecC
Q 021760 75 TKS 77 (308)
Q Consensus 75 ~k~ 77 (308)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 56
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.67 E-value=1.5e-16 Score=131.55 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=67.7
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhC--CCCCCC--CCeEEEeCCEecCCCCChhhhccCCC------CE
Q 021760 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQG--SDVYPA--SQQMLIHQGKVLKDVTTLEENKVAEN------SF 69 (308)
Q Consensus 1 M~I~Vktl~gk~~-~leV~~~~TV~~LK~~I~~~~g--~~~ip~--~~qkLIy~GKiL~D~~tL~dygIk~g------~~ 69 (308)
|+|+||+++|+.| .+++++++||.+||++|+..++ ++.+|+ ++|||||+||+|+|++||++|+|.+| .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 6999999999999999976543 122776 79999999999999999999999998 56
Q ss_pred EEEEEecCCC
Q 021760 70 VVVMLTKSKV 79 (308)
Q Consensus 70 I~v~v~k~k~ 79 (308)
|||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888876643
No 57
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.67 E-value=7.8e-17 Score=128.11 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=64.1
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHh-CCCCCCCCCeEEEeCCEecCCCCChhhh--ccCCCCEEEEE
Q 021760 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ-GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk--~~~leV~~~~TV~~LK~~I~~~~-g~~~ip~~~qkLIy~GKiL~D~~tL~dy--gIk~g~~I~v~ 73 (308)
|+|+||+++|+ .+.|+|++++||.+||++|+.+. |. .++++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999864 51 446999999999999999999999 99999999974
No 58
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.67 E-value=1.9e-16 Score=134.61 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|+++.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|++|++||++++.+.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~G 156 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998765
No 59
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.1e-17 Score=129.93 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|+|+||+ .|+.|.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688886 899999999999999999999999999 99999999999999999999999999999999998764
No 60
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=132.44 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=65.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC---CC--CCCCeEEEeCCEecCCCCChhhhccCCCCE--EEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VY--PASQQMLIHQGKVLKDVTTLEENKVAENSF--VVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~---~i--p~~~qkLIy~GKiL~D~~tL~dygIk~g~~--I~v~ 73 (308)
|+|+||+++|+++.|+|++++||.+||++|+..++.+ .+ ++++|||||+||+|+|+++|++|+|+++++ |||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 6899999999999999999999999999999843211 15 489999999999999999999999998885 5555
Q ss_pred EecC
Q 021760 74 LTKS 77 (308)
Q Consensus 74 v~k~ 77 (308)
++.+
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 5543
No 61
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.1e-16 Score=127.40 Aligned_cols=76 Identities=33% Similarity=0.522 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
++|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 47999999999999999999999999999999999 99999999999999999999999999999999999987654
No 62
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.67 E-value=2.3e-16 Score=122.70 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~l-eV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI---y~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|+|+||. .|+.|.| +|++++||.+||++|++.+| +|+++|||+ |+||+|+|+.+|++|+|++|++|+||.+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 8899999 99999999999999999999 999999999 99999999999999999999999998754
No 63
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.66 E-value=1.9e-16 Score=127.74 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=71.8
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTL---KGTHFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl---~gk~~~leV~~-~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|+|+|++. +|+.+.++|++ ++||.+||++|+...| +|+++|||+|+||+|+|+++|++|+|++|++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred CCC
Q 021760 77 SKV 79 (308)
Q Consensus 77 ~k~ 79 (308)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 64
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=3.8e-16 Score=120.31 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=66.2
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
+++++++|+.|.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 456778999999999999999999999999999 9999999999999999999999999999999999864
No 65
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=134.47 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|++|.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998764
No 66
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=2e-16 Score=124.43 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=65.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|+|+|| +.+++|.|+|++++||.+||++|+..+| +|+++|||+|+||+| |+.+|++|+|+++++||||.++
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678898 6789999999999999999999999999 999999999999999 5569999999999999998654
No 67
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.64 E-value=5.4e-16 Score=131.78 Aligned_cols=73 Identities=30% Similarity=0.420 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-H-QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI-y-~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|+|+||+++|++|.++|++++||.+||++|+...| +|+++|||+ | +|+.|+|+++|++|+|++|++|+++++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 79999999999999999999999999999999999 999999999 9 7999999999999999999999999873
No 68
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.64 E-value=3.7e-16 Score=137.77 Aligned_cols=77 Identities=35% Similarity=0.543 Sum_probs=73.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+...
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999999876543
No 69
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.64 E-value=6.8e-16 Score=123.84 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=68.5
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhcc-CCCCEEEEEEec
Q 021760 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~g--k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygI-k~g~~I~v~v~k 76 (308)
|+|+|++..+ .++.|+|++++||.+||++|++++| +|+++|||||+|+.|+|+++|.+||| ++|++||+++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999874 6899999999999999999999999 99999999999999999999999999 599999999864
No 70
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=124.91 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=67.1
Q ss_pred EEEEE-eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 2 KVFVK-TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 2 ~I~Vk-tl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
.|+|+ ...++.|.++++++.||.+||++|+...+ +|.++|+|||+||+|+|+.||++|||++|.+|||+++..
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 45555 45688999999999999999999999999 999999999999999999999999999999999998864
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.62 E-value=2.7e-17 Score=136.08 Aligned_cols=76 Identities=36% Similarity=0.555 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++.+..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.62 E-value=2.3e-15 Score=125.98 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|||++|++|+|+.+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998643
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.61 E-value=2.6e-15 Score=125.63 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|+.|.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999998753
No 74
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=131.18 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|.|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+++|.+|+|++|++|||+++.+.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999988653
No 75
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.60 E-value=3.2e-15 Score=121.28 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=69.2
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEE
Q 021760 1 MKVFVKTL----------KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFV 70 (308)
Q Consensus 1 M~I~Vktl----------~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I 70 (308)
|.|+|+.. +|+++.|+|++++||.+||++|+...| +++++|||+|+|+.|+|+++|++|+|++|++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35667654 578999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 021760 71 VVMLTKSKV 79 (308)
Q Consensus 71 ~v~v~k~k~ 79 (308)
||+++.+..
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987653
No 76
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.58 E-value=1.6e-16 Score=135.53 Aligned_cols=76 Identities=36% Similarity=0.555 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+|++++|++|.|+|++++||.+||.+|+...| +|+++|+|+|+|++|+|+.+|++|+|++|++|+|+++.+..
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=117.78 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=63.4
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCcHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CEecCCCCChhhhccCCCCEEEE
Q 021760 1 MKVFVKTLKGTHF--EI-EVKPEDKVSDVKKNIETV-QGSDVYPASQQMLIHQ--GKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 1 M~I~Vktl~gk~~--~l-eV~~~~TV~~LK~~I~~~-~g~~~ip~~~qkLIy~--GKiL~D~~tL~dygIk~g~~I~v 72 (308)
|+|+||+++|+++ .| +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|+|+++++|||
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999998775 58 999999999999999995 67 99999999976 99999999999999999999876
No 78
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.7e-15 Score=117.16 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=65.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy--~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|.++++.+.|++|.|+|++++||.+||++|++++| +|+++|||+| .|+ |+|+.+|++|+|+.|++|||++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 56777789999999999999999999999999999 9999999996 566 99999999999999999998764
No 79
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.54 E-value=5.9e-15 Score=114.26 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=64.3
Q ss_pred EEEEE--eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCEecCCCCChhhhccCCCCEEEE
Q 021760 2 KVFVK--TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-------QGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vk--tl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy-------~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
+|.|. ..+.+.+++.+++++||.+||++|+..+| +|+++||||| .|+.|+|+++|++|||++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 34443 44667789999999999999999999999 9999999997 488999999999999999999999
Q ss_pred EEecC
Q 021760 73 MLTKS 77 (308)
Q Consensus 73 ~v~k~ 77 (308)
+-+.+
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 97654
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.53 E-value=1.8e-14 Score=135.53 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+||+++|+.+.|+|++++||.+||++|+...| +++++|||+|+||+|+|+++|++|+|+++++|+|++|.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998753
No 81
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.50 E-value=8.2e-14 Score=109.77 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=62.2
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC--CE---ec-CCCCChhhhccCCCCEEEE
Q 021760 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GK---VL-KDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 1 M~I~Vktl~g--k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~--GK---iL-~D~~tL~dygIk~g~~I~v 72 (308)
++|+|+...+ +.++++|++++||.+||++|+..+| +|+++|||+|. |+ .| +|+++|++|||++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3677887655 4889999999999999999999999 99999999997 55 34 8999999999999999998
Q ss_pred E
Q 021760 73 M 73 (308)
Q Consensus 73 ~ 73 (308)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 7
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=4.4e-14 Score=113.33 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCE-----------e----cCCCCChhhhcc
Q 021760 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-----------V----LKDVTTLEENKV 64 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~-~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GK-----------i----L~D~~tL~dygI 64 (308)
|+|+||+.+|+. .|+|+ +++||.+||++|+.++| +++++|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999965 79999 99999999999999999 9999999999998 3 589999999999
Q ss_pred CCCCEEEEEEe
Q 021760 65 AENSFVVVMLT 75 (308)
Q Consensus 65 k~g~~I~v~v~ 75 (308)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998765
No 83
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.46 E-value=1.4e-13 Score=108.89 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=62.3
Q ss_pred EEEEEeCC--CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---Ee----cCCCCChhhhccCCCCEEEE
Q 021760 2 KVFVKTLK--GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vktl~--gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G---Ki----L~D~~tL~dygIk~g~~I~v 72 (308)
+|+|+... ++.++++|++++||.+||++|+..+| +|+++|||+|.| +. ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 56677543 35799999999999999999999999 999999999988 43 58999999999999999999
Q ss_pred EEe
Q 021760 73 MLT 75 (308)
Q Consensus 73 ~v~ 75 (308)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 84
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.45 E-value=1.2e-13 Score=103.90 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=43.5
Q ss_pred cCCcHHHHHHHHHHhcCCcc-CHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 021760 168 AGSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (308)
Q Consensus 168 ~g~~~e~~v~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEYL~~GIP~~ 217 (308)
..+.|+..|++|++|| | +|+.+++|||++++|++||||||++|||+.
T Consensus 25 pe~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 25 TEGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred chHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 3567899999999999 9 899999999999999999999999999864
No 85
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.44 E-value=8e-15 Score=128.97 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+||+++|++|.|+|++++||.+||.+|+...| +|+++|||||+|++|+|+.+|+ ++++|||+++.+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrG 70 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLG 70 (189)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999 8899999998764
No 86
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=2.1e-13 Score=106.89 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=63.5
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---Ee----cCCCCChhhhccCCCCEEEE
Q 021760 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 1 M~I~Vktl~gk-~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G---Ki----L~D~~tL~dygIk~g~~I~v 72 (308)
|+|+|+..... .++++|++++||.+||++|+...| +|+++|||+|.| +. |+|+++|++|||++|++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 36778765543 689999999999999999999999 999999999986 54 58999999999999999999
Q ss_pred EEec
Q 021760 73 MLTK 76 (308)
Q Consensus 73 ~v~k 76 (308)
+...
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 7643
No 87
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.44 E-value=1.2e-13 Score=93.37 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GI 214 (308)
.++.|++|++|| |+|++|++|||+++||++||+|||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 368899999999 9999999999999999999999999987
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=3.1e-13 Score=106.22 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~ 79 (308)
|+|+|++.+|+.+.++|.+++++..||++++++.| ++++++||+|+|+.|++++|+++|+|++||+|+|+++....
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 67899999999999999999999999999999999 99999999999999999999999999999999999987653
No 89
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.43 E-value=1.5e-13 Score=103.09 Aligned_cols=44 Identities=36% Similarity=0.389 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
...+++.|++||+|| |+|++|++|||+++||+|||||||++|+.
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 456799999999999 99999999999999999999999999943
No 90
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.41 E-value=1.7e-13 Score=94.02 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=38.4
Q ss_pred CcHHHHHHHHHHhcCCcc-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
+.|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 5 ~~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 45889999999999 9 78999999999999999999999987
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.41 E-value=3.1e-13 Score=104.00 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=63.5
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC--CEecC---CCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GKVLK---DVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~le-V~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~--GKiL~---D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+||+.+|+. .++ |++++||.+||.+|+++.| +++++|+|+|+ +|.|+ |+++|++|||++|++|||..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999964 477 9999999999999999999 99999999987 48874 68899999999999998865
Q ss_pred e
Q 021760 75 T 75 (308)
Q Consensus 75 ~ 75 (308)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.39 E-value=1.4e-12 Score=97.33 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+|++.+|+.+.+.|.+++++..|++.++++.| ++++.+||+|.|+.|.++.|+++|++++||+|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 67999999999999999999999999999999999 999999999999999999999999999999999873
No 93
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.38 E-value=4.3e-13 Score=94.73 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHhcCCcc-CHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
+.|+..|++|++|| | +|+.|++||++++||.+||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 56899999999999 9 9999999999999999999999999975
No 94
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=2.1e-12 Score=100.92 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+|++.+|+.+.+.|.+++++..||+.++++.| ++++.+||+|+|+.|.+++|+++|++++||+|+|++....
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57889999999999999999999999999999999 9999999999999999999999999999999999987654
No 95
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.36 E-value=1.7e-12 Score=106.45 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=64.1
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---Ee----cCCCCChhhhccCCCCEEEE
Q 021760 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 1 M~I~Vktl~gk-~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G---Ki----L~D~~tL~dygIk~g~~I~v 72 (308)
|.|+|+...+. .++++|++++||.+||.+|+...| +|+++|||+|.| +. ++|+++|++|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46778765543 688999999999999999999999 999999999987 43 48999999999999999999
Q ss_pred EEecC
Q 021760 73 MLTKS 77 (308)
Q Consensus 73 ~v~k~ 77 (308)
+...+
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 87543
No 96
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.36 E-value=4.4e-12 Score=96.40 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=67.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk-~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
|+|+|++.+|+ .+.+.|..++++..||+.++++.| ++++++||+|.|+.|.+++|+++|++++||+|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 899999999999999999999999 99999999999999999999999999999999986
No 97
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.36 E-value=8.3e-13 Score=101.23 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS--G-IPEQTA 219 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~--G-IP~~~~ 219 (308)
.++.|++||+|| |+|++|++|||+++||++||+|||++ | ||+.++
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~~ 76 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDLQ 76 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTSS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhhh
Confidence 578999999999 99999999999999999999999999 7 886543
No 98
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.35 E-value=1.2e-12 Score=92.00 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHhcCCcc-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
.+.|+..|++|++|| | +|+.|++||++++||.+||||||++|
T Consensus 9 ~~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 467899999999999 9 99999999999999999999999986
No 99
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.34 E-value=7.6e-13 Score=125.34 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=65.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI---y~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|+|+|| ++|++|.|+|++++||.+||++|++.+| +|+++|||| |+||+|+|+.+|++|||++|++|+||.+.
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 578899 6899999999999999999999999999 999999999 89999999999999999999999999653
No 100
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.32 E-value=4.8e-12 Score=99.15 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|.|+|++.+|+.+.+.|..++++..|++.++++.| ++++.+||+|.|+.|.++.|+++|+|.+||+|+|+++..
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57888988999999999999999999999999999 999999999999999999999999999999999998754
No 101
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.31 E-value=3.2e-12 Score=93.32 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~ 216 (308)
.++.|++|++|| |+|++|++|||+++||++||+|||+++..+
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 478999999999 999999999999999999999999999543
No 102
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=5.7e-12 Score=100.84 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|+|+|++.+|+.+.+.|..++++..||+.++++.| ++++.+||+|.|+.|.+++|+.+|+|++||+|+|++....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987654
No 103
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.30 E-value=1.9e-12 Score=92.95 Aligned_cols=42 Identities=29% Similarity=0.446 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHHHhcCCcc-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
.+.|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 14 e~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 14 EERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 467899999999999 9 79999999999999999999999998
No 104
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.30 E-value=2.8e-12 Score=94.41 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHHhcCCcc-CHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 021760 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (308)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEYL~~GIP~~ 217 (308)
.+.|+..|++|++|| | +|+.+++|||+++||++||||||++++++.
T Consensus 16 e~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 16 EVRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 456889999999999 9 788889999999999999999999998864
No 105
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.6e-12 Score=93.83 Aligned_cols=43 Identities=40% Similarity=0.677 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~~ 217 (308)
.++.|++||+|| |+|++|++|||+++||++||+|||+.++++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 578999999999 9999999999999999999999999998753
No 106
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.26 E-value=9.6e-12 Score=100.51 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|.|+|++.+|+.+.+.|..++++..||+.++++.| ++++.+||+|.|+.|.+++|+++|+|++||+|+|++....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987543
No 107
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.24 E-value=1.7e-11 Score=98.36 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|+|+|++ +|+.+.+.|..++++..||++++++.| ++++.+||+|.|+.|.+++|.++|++++||+|+|+++..
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5788998 999999999999999999999999999 899999999999999999999999999999999998754
No 108
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.23 E-value=1.1e-11 Score=93.14 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
.++.|++|++|| |+|++|++|||+++||++||||||+++.-
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 478999999999 99999999999999999999999999843
No 109
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.21 E-value=5.8e-12 Score=91.15 Aligned_cols=33 Identities=39% Similarity=0.691 Sum_probs=31.2
Q ss_pred CchHHhhChHHHHHHHHHHHhChhhHHHHHhcC
Q 021760 275 GTLDFLRNSQQFQALRTMVQANPQILQQWALIV 307 (308)
Q Consensus 275 ~~l~~Lr~~pqf~~lRq~vqqnP~~L~~~L~~~ 307 (308)
++|+|||++|||++||++||+||++|++|||++
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql 34 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQI 34 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred chHHHHHcChHHHHHHHHHHHCHHHHHHHHHHH
Confidence 479999999999999999999999999999975
No 110
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.21 E-value=1.3e-11 Score=81.64 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
+++++.|++|++|| |+|++|++||+++.||+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 35789999999999 9999999999999999999999995
No 111
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.5e-11 Score=92.52 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcC-ChHHHHHHHHhCCCCC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEYL~~GIP~~ 217 (308)
.++.|++||+|| |+|++|++|||+++| |.+||+|||+.++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 378999999999 999999999999997 7999999999998864
No 112
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.21 E-value=7.5e-12 Score=91.65 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=40.7
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHHHhcC-ChHHHHHHHHhCCCCC
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEYL~~GIP~~ 217 (308)
...+..|++|++|| |+|++|++||++++| |+++|+|||+.++.+.
T Consensus 7 ~~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 7 GSSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CCSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 34467899999999 999999999999999 9999999999998753
No 113
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.20 E-value=9.7e-12 Score=91.06 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhc-CChHHHHHHHHhCCCCC
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRAAY-NNPERAVEYLYSGIPEQ 217 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrAaf-nNpdRAvEYL~~GIP~~ 217 (308)
++.|++||+|| |+|++|++|||+++ +|++||+|||+.++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 46899999999 99999999999995 89999999999998764
No 114
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.19 E-value=2.7e-12 Score=95.74 Aligned_cols=34 Identities=38% Similarity=0.642 Sum_probs=31.9
Q ss_pred CCchHHhhChHHHHHHHHHHHhChhhHHHHHhcC
Q 021760 274 AGTLDFLRNSQQFQALRTMVQANPQILQQWALIV 307 (308)
Q Consensus 274 ~~~l~~Lr~~pqf~~lRq~vqqnP~~L~~~L~~~ 307 (308)
+++|+|||++|||++||++||+||++|++|||++
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL 36 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQI 36 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHTTCGGGHHHHHHHH
T ss_pred CchHHHHHcChHHHHHHHHHHHCHHHHHHHHHHH
Confidence 4679999999999999999999999999999975
No 115
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=84.03 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
+++.|++|++|| |+|++|++|||++ ||++||+|||+..
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 478999999999 9999999999999 7999999999864
No 116
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.18 E-value=1.5e-11 Score=90.12 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhcC-ChHHHHHHHHhCCC
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIP 215 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEYL~~GIP 215 (308)
++.|++||+|| |+|++|++|||+++| |++||||||+.++-
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 56899999999 999999999999999 99999999999864
No 117
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.14 E-value=1.2e-10 Score=91.41 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=62.1
Q ss_pred EEEEEe---CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC------Ee-c-CCCCChhhhccCCCCEE
Q 021760 2 KVFVKT---LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG------KV-L-KDVTTLEENKVAENSFV 70 (308)
Q Consensus 2 ~I~Vkt---l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G------Ki-L-~D~~tL~dygIk~g~~I 70 (308)
+|+|+. .+|+.+++.+..++||.+||.+|+..+| +|+..|||+|.+ .+ | +|+++|.+|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 566664 5678899999999999999999999999 999999999863 23 5 67789999999999999
Q ss_pred EEEEec
Q 021760 71 VVMLTK 76 (308)
Q Consensus 71 ~v~v~k 76 (308)
||....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998754
No 118
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=8.2e-11 Score=90.37 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~~ 217 (308)
.++.|++||+|| |+|++|++|||+++||.++|+|||+.++.+.
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 578999999999 9999999999999999999999999997654
No 119
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.09 E-value=1.1e-10 Score=89.98 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcC-ChHHHHHHHHhCCCCC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEYL~~GIP~~ 217 (308)
.+..|++||+|| |+|++|++|||+++| |.+||+|||+.++.+.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 478999999999 999999999999985 9999999999998764
No 120
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.05 E-value=1.7e-10 Score=82.68 Aligned_cols=38 Identities=29% Similarity=0.616 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
++.|..|++|| |.++|+.+||++.-||.|||+|||++.
T Consensus 20 ~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 20 RQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 67799999999 999999999999999999999999975
No 121
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.03 E-value=2.1e-10 Score=81.20 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHhcCCcc-CHHHHHHHHHHhcCChHHHHHHHHhCC
Q 021760 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGI 214 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEYL~~GI 214 (308)
.|+..|++|++|| | +|+.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5789999999999 9 556689999999999999999999884
No 122
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.02 E-value=2.6e-10 Score=93.99 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
.+..|++|++|| |+|++|++|||+++||++||+|||++|++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 578999999999 99999999999999999999999999987
No 123
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=99.01 E-value=3.4e-10 Score=90.82 Aligned_cols=43 Identities=35% Similarity=0.514 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHhcCCcc-CHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
..|+..|++|++|| | +|+++++||+++++|++||||||++|.+
T Consensus 64 ~~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 64 SQWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp CTTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 45789999999999 9 7899999999999999999999999854
No 124
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.01 E-value=1.4e-09 Score=88.27 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
|+|+|+..+|+.+.+.|..++++..|++.++++.| ++...+||+|.|+.|.++.|.++|++++||+|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46788888899999999999999999999999999 99999999999999999999999999999999998753
No 125
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.93 E-value=9.6e-10 Score=84.76 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
++.|++|++|| |+|++|++||++.++|.+||+|||+..
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 78999999999 999999999999999999999999987
No 126
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.81 E-value=8.8e-10 Score=75.76 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GI 214 (308)
+-++.|++|++|| |+|.+|++||.+.-+|.++|++||+++.
T Consensus 3 ~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 3478899999999 9999999999999999999999999875
No 127
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.77 E-value=2.3e-08 Score=88.53 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=70.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCCCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k~~ 80 (308)
|+|+|+ .+|+.+.+.|..++++..||+.++++.| ++..++||+|.|+.|.++.|.++|++++||+|+|++......
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467787 5889999999999999999999999999 999999999999999999999999999999999999876544
No 128
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.3e-08 Score=89.17 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|.|+|+ .+|+.+.+.|..++++..|++.++++.| ++...+||+|+|+.|.+++|.++|+|++||+|.|++....
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 457776 4888999999999999999999999999 9999999999999999999999999999999999987654
No 129
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.70 E-value=1.9e-08 Score=69.73 Aligned_cols=38 Identities=34% Similarity=0.424 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
.+..|+.||+|| |+|++|++||+.+-||.|-|-.+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 467899999999 99999999999999999999999974
No 130
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.65 E-value=3.4e-08 Score=68.72 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
.|..|..||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 456799999999 99999999999999999999999984
No 131
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.64 E-value=2.1e-08 Score=81.81 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
+.+.|.+|++|| |++++|+.||+...||.|||||||+++
T Consensus 76 ~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567899999999 999999999999999999999999986
No 132
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.62 E-value=2.1e-08 Score=76.27 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=57.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEe---c--CCCCChhhhccCCCCEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV---L--KDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKi---L--~D~~tL~dygIk~g~~I~v~ 73 (308)
|.|.||+.+| .+.|+|++++||.+||++|.+.++ ++.+.+.|.++-.. | .++.+|+++||++||.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788998777 788999999999999999999999 88888777654432 3 47889999999999999874
No 133
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.62 E-value=2.2e-07 Score=69.93 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=64.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~-~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
.+.++..+...+.+.|.++.+|.+|-+..+.+.| |+.+ .++|.|.|..|+.+.++.+|++.+||.|.+|+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4556777777899999999999999999999999 9999 99999999999999999999999999999985
No 134
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.54 E-value=4.2e-07 Score=71.63 Aligned_cols=70 Identities=10% Similarity=0.202 Sum_probs=63.9
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk-~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
+.|+|+..+|+ .+.+.|..++++..|.+..+++.| ++....||+|.|..|..+.|..++++++||+|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35677777784 788999999999999999999999 88999999999999999999999999999999886
No 135
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.54 E-value=1.3e-07 Score=63.56 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
|..+|..|..||+|| |+|+.|++||-.+-||.+-|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 577899999999999 99999999999999999999999874
No 136
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.48 E-value=1.7e-08 Score=89.67 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
|.|+| ..+|+.+.+.|..++++..||+.++++.| ++.+.+||+|+|+.|.+++|.+++++++||+|.|+.....
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 56777 66888899999999999999999999999 9999999999999999999999999999999999987654
No 137
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.46 E-value=1.2e-07 Score=83.75 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=40.3
Q ss_pred ccCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 167 ~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
..+..|++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34678999999999999 99999999999999999999999985
No 138
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.44 E-value=2.4e-07 Score=64.66 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
..|..|..||+|| |+|+.|++||+.+-||.+-|-..|+.=
T Consensus 6 p~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 6 QLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3578999999999 999999999999999999999999854
No 139
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.39 E-value=1.1e-07 Score=82.17 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=27.1
Q ss_pred chHHhhChHHHHHHHHHHHhChhhHHHHHhcC
Q 021760 276 TLDFLRNSQQFQALRTMVQANPQILQQWALIV 307 (308)
Q Consensus 276 ~l~~Lr~~pqf~~lRq~vqqnP~~L~~~L~~~ 307 (308)
--..++++|||++||++||+||+||++|||++
T Consensus 25 l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqi 56 (171)
T 2qsf_X 25 PGSIGLTVEDLLSLRQVVSGNPEALAPLLENI 56 (171)
T ss_dssp ---CCCCHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 44456899999999999999999999999964
No 140
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.35 E-value=6.2e-07 Score=71.10 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 021760 170 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (308)
Q Consensus 170 ~~~e~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~ 216 (308)
.++++.|..||+| | |++++|+.||.-+.++.++|++||+.|.++
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3578999999999 9 999999999999999999999999999884
No 141
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.35 E-value=2.6e-06 Score=66.56 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=66.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
+.|+|+ .+|..+.+.|..++....|.+..+++.| +.++.+|++|.|..+.++.|-.++++.++|+|.+++.+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 357788 4788999999999999999999999999 88999999999999999999999999999999999865
No 142
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.25 E-value=9.6e-07 Score=71.95 Aligned_cols=40 Identities=33% Similarity=0.606 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
.-.+.|+.|++|| |+++.|++||++..||+++|+|||+.-
T Consensus 7 ~e~~~v~~l~~MG---Fp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 7 SERQCVETVVNMG---YSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 3468899999999 999999999999999999999999863
No 143
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.23 E-value=1.2e-06 Score=61.60 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=39.7
Q ss_pred cCCcHHHHHHHHHHhcCCcc-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 168 AGSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 168 ~g~~~e~~v~~i~~MG~~~f-~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
..+.|...+++|.+|| | +++..++|||...+|.+|||++|+.+
T Consensus 5 ~ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 5 SSGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp SCTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3466888999999999 9 99999999999999999999999975
No 144
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.18 E-value=3.8e-06 Score=74.62 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=66.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
.|+|++ +++.+.+.|..++++..||+..+++.| ++.+++||+|.|+.+.+++|..++.++++|+|.++..+..
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 566776 677888999999999999999999999 9999999999999999999999999999999999876654
No 145
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.13 E-value=1.4e-06 Score=71.44 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhcC-ChHHHHHHHHhCCCC
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPE 216 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEYL~~GIP~ 216 (308)
+..|+.|++|| |+++.|++|||+..| |.++|++||+....+
T Consensus 4 ~~~l~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 4 ESSVMQLAEMG---FPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp THHHHHHHTTS---SCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 46899999999 999999999999988 899999999998664
No 146
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.07 E-value=2.8e-06 Score=73.28 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
++-++.|++|++|| |+|++|++||.++.+|.+.|++||+.+
T Consensus 128 pee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 128 PEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 44578899999999 999999999999999999999999976
No 147
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.05 E-value=1.5e-05 Score=62.31 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=50.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEec--CCCCChhhhccC-CCCEEEEEE
Q 021760 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL--KDVTTLEENKVA-ENSFVVVML 74 (308)
Q Consensus 9 ~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL--~D~~tL~dygIk-~g~~I~v~v 74 (308)
.+..+.+.|.+++||..||++|++++| |++++|+|||.||.| +.++.-..|--. ..+-|+++-
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 567889999999999999999999999 999999999999875 556666666443 334454443
No 148
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.00 E-value=1.1e-05 Score=61.50 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=59.2
Q ss_pred EEEEEe--CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---CCeEEEeCCEecCCCCChhhhccCCCCEEEE
Q 021760 2 KVFVKT--LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---SQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vkt--l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~---~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v 72 (308)
+|+|.. +.++.|.|++....||+.|++.+.+.++.+ .+. .++|+.-+|.+|.+++.|.+|+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~-~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVS-MPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCC-SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCC-cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566664 588999999999999999999999998843 221 2468888999999999999999999999976
No 149
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.99 E-value=8.2e-07 Score=84.89 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
+.|+|++ +|+.+.+.|..++++..|++.++++.| ++.+.+||+|+|+.|.++.|.+++++++||+|.|+.....
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 3566776 677888999999999999999999999 8999999999999999999999999999999999987543
No 150
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.93 E-value=2e-05 Score=64.89 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=57.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-------------------------------------Ce
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------------------------------------QQ 44 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~-------------------------------------~q 44 (308)
.|+|+.++|...++.|+.+.+|.+++..|+.+.| +... ++
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3889999999999999999999999999999999 5533 34
Q ss_pred EEEe--CCEecCCCCChhhhccCCCCEEEEE
Q 021760 45 MLIH--QGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 45 kLIy--~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
||.. .+..|+++++|.++||.++++|.+-
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 4422 2367889999999999999997653
No 151
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.88 E-value=5.7e-05 Score=58.43 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
|.|+|-..+++.+.|.|.++.++.++-+..+.++| +..++..|.|++|.|+-+..+.-.||-+|..|.++.+.+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 67899989999999999999999999999999999 888899999999999999999999999999999986544
No 152
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.81 E-value=2.7e-06 Score=81.91 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecCC
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~k 78 (308)
.|+|+. +++.+.+.|..++++..||+..+++.| ++..+++|+|+|+.|.+++|.+++++++||+|.+++....
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccc
Confidence 456665 667788999999999999999999999 9999999999999999999999999999999999987654
No 153
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.80 E-value=2.7e-05 Score=54.22 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcC-ChHHHHHHHH
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLY 211 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafn-NpdRAvEYL~ 211 (308)
.-++++.|++|| |+++-|++||+..-| +.+-|+|||.
T Consensus 9 n~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 9 NRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 457899999999 999999999999987 7999999997
No 154
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.80 E-value=4.6e-06 Score=80.20 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=38.4
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
++-++.|++|++|| |+|++|++||+++-+|.+||++||+++
T Consensus 323 ~ee~eaI~rL~~mG---F~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 323 PQEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp TTTHHHHHHHHHHT---CCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred CcCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 45678999999999 999999999999999999999999986
No 155
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.54 E-value=7.6e-05 Score=68.23 Aligned_cols=43 Identities=30% Similarity=0.431 Sum_probs=40.3
Q ss_pred ccCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 167 ~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
+.+.+|++.|++|++|| |+|++|+.||+-.-+|-++|+|||+.
T Consensus 210 ~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 210 VSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 44678999999999999 99999999999999999999999985
No 156
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.45 E-value=0.00048 Score=52.11 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=57.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEec---CCCCChhhhccCCCCEEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVL---KDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL---~D~~tL~dygIk~g~~I~v~ 73 (308)
+|.||..+|+.+.-.+..++||.+|...|.. .+ +.....+|+ |-.|.| +.+++|+++|+.++.+|+|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5889999999988899999999999999987 56 567788887 557888 45789999999988888774
No 157
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.37 E-value=0.0018 Score=51.62 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=59.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecC--C-CCChhhhccCCCCEEEEEEe
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--D-VTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~--D-~~tL~dygIk~g~~I~v~v~ 75 (308)
+|.||..+|+.+.-.+..++||.+|.+.|....+ .+.....|+ |-.|.|. | +++|+++|+.+..+|+|...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 6889999999999999999999999999998877 556677786 5678886 3 68999999998877766543
No 158
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.87 E-value=0.0025 Score=51.91 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=58.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEec--CC-CCChhhhccCCCCEEEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVL--KD-VTTLEENKVAENSFVVVML 74 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL--~D-~~tL~dygIk~g~~I~v~v 74 (308)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.| .| +++|.++|+.....|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 68899999999999999999999999999876 6 666778887 568888 34 7899999999988777653
No 159
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.57 E-value=0.017 Score=45.81 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=56.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecC--CCCChhhhccCCCCEEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--DVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~--D~~tL~dygIk~g~~I~v~ 73 (308)
+|.||..+|+.+.-.+..++||.+|..-|... + +.....+|+ |-.|.|. .++||+++||.+..+|+|-
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 68899999999888999999999999999855 4 445678886 5678885 4689999999988777664
No 160
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.50 E-value=0.01 Score=48.48 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=53.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecCC-CCChhhhccCCCC
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENS 68 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~D-~~tL~dygIk~g~ 68 (308)
+|.||..+|+.+.-.+..++||.+|+..|..... + +......|+ |-.|.|.| +++|+++|+.+..
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~-~-~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psa 121 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARP-A-MAATSFVLMTTFPNKELADENQTLKEANLLNAV 121 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCS-G-GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCc-C-CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCce
Confidence 5889999999999999999999999999988632 1 445667776 56899965 6899999999743
No 161
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.41 E-value=0.0034 Score=44.72 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHh--cCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 171 NLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 171 ~~e~~v~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
..|+.|+.|.+| . ++++.|+..|++.-||.|+|++.|+.-
T Consensus 8 ~~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SCHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 358999999999 6 899999999999999999999999976
No 162
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.38 E-value=0.00054 Score=61.11 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GI 214 (308)
++++.|+++++|| |+|+++++||+-.-.+-++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4689999999999 9999999999999999999999999884
No 163
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.35 E-value=0.02 Score=43.65 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=59.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe---CCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy---~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
++.|.....+++.+.|++..++.+|--.|+++.. +.++...|.. .+..|+-+++|.||||++ ++.+-.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 5677777888899999999999999999999987 8888888864 456789999999999998 77776655
No 164
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.27 E-value=0.029 Score=44.85 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=46.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCEecCCC-------------CChhhhccCC
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGKVLKDV-------------TTLEENKVAE 66 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~------~~qkLIy----~GKiL~D~-------------~tL~dygIk~ 66 (308)
+..+.+.|-.++||.++|+||-+..-+. +|. +.+.|-| .|++|.|. .||..|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 4568888889999999999997665332 443 4556765 35777652 3799999999
Q ss_pred CCEEEEEE
Q 021760 67 NSFVVVML 74 (308)
Q Consensus 67 g~~I~v~v 74 (308)
|.+|.++-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998764
No 165
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.01 E-value=0.022 Score=41.97 Aligned_cols=51 Identities=14% Similarity=0.305 Sum_probs=44.5
Q ss_pred cccCCcHHHHHHHHHHh--cCCccCHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCC
Q 021760 166 LVAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 219 (308)
Q Consensus 166 l~~g~~~e~~v~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEYL~~G-IP~~~~ 219 (308)
-+.+.+.+..|.+|.++ - |....|.++|..--+|+|+.|.+|+.| +|.++.
T Consensus 7 ~~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~ 60 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAPTLS 60 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTT
T ss_pred CCcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHH
Confidence 34678899999999998 5 679999999999889999999999999 787654
No 166
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.96 E-value=0.014 Score=42.52 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=39.4
Q ss_pred cCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 168 ~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
.+.+++..|+.|.+|= -.++++-|+..|++.-+|.|+||+-||.-
T Consensus 14 ~~~~~~~~v~~L~~MF-P~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMF-PNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCSHHHHHHHHHHC-SSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 5678899999999991 12799999999999999999999999864
No 167
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.88 E-value=0.012 Score=40.24 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=36.0
Q ss_pred HHHHHHHHHHh--cCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 172 ~e~~v~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
.+.-|+.|+|| . -++++|.++|+++-+|-|||+.-||++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47889999999 5 589999999999999999999999987
No 168
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.76 E-value=0.041 Score=45.51 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=47.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCE-ecCCC-------------CChhhhccCC
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~------~~qkLIy----~GK-iL~D~-------------~tL~dygIk~ 66 (308)
..+.+.|-.++||.++|+||-+..-++ +|. +++-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 468889989999999999998776544 544 3445554 344 46553 2899999999
Q ss_pred CCEEEEEEec
Q 021760 67 NSFVVVMLTK 76 (308)
Q Consensus 67 g~~I~v~v~k 76 (308)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887554
No 169
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.74 E-value=0.028 Score=41.50 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=47.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
|+|+||....+...+++....||.+|-+ ..| ++++...+..||+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 8999997755556689999999999776 466 8888888889999986665 2348888775
No 170
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.49 E-value=0.088 Score=38.10 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=45.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+|.... ....+++....||.+|.+.+ + ++.....+..+|+++..+. -+++||.|.++-
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 567776332 24567777778999998865 5 5567777889999997665 688999998863
No 171
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.011 Score=62.32 Aligned_cols=41 Identities=39% Similarity=0.670 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
..-++.|..|++|| |++++.++||++.-||.+||||||.+.
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 34578899999999 999999999999999999999999986
No 172
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.41 E-value=0.082 Score=46.70 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=50.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEE--e-CC--EecCC-CCChhhhccCCCCEEEEEEec
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLI--H-QG--KVLKD-VTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~-~qkLI--y-~G--KiL~D-~~tL~dygIk~g~~I~v~v~k 76 (308)
.+.+.++..+||.+|++++...++ ++.+ ..||- | .+ ..|+| +++|.+++|.++..|+|=++.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 356788999999999999999999 8886 68883 4 33 34665 579999999999999987764
No 173
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.88 E-value=0.15 Score=45.39 Aligned_cols=62 Identities=13% Similarity=0.246 Sum_probs=50.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEEe-C----CEecCC-CCChhhhccCCCCEEEEEEecC
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH-Q----GKVLKD-VTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~g~~~ip~~-~qkLIy-~----GKiL~D-~~tL~dygIk~g~~I~v~v~k~ 77 (308)
+.+.++..+||.+|++++...++ ++.+ ..||-. . ...|.| +.+|.+++|.++..|.|=++.+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 55778999999999999999999 8887 688842 2 245665 6899999999999998877653
No 174
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.82 E-value=0.15 Score=41.58 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=48.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCE-ecCCC-------------CChhhhcc
Q 021760 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKV 64 (308)
Q Consensus 9 ~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~------~~qkLIy----~GK-iL~D~-------------~tL~dygI 64 (308)
.+..+.+.|-.++||.++|+||-+..-+. +|. +.+.|-| .|+ +|.|. .||..|+|
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 34568888889999999999998765433 443 4567765 344 36552 36899999
Q ss_pred CCCCEEEEEEe
Q 021760 65 AENSFVVVMLT 75 (308)
Q Consensus 65 k~g~~I~v~v~ 75 (308)
.+|.+|.+..+
T Consensus 94 ~dgatv~l~~~ 104 (127)
T 3h6n_A 94 PEGASLAMSLI 104 (127)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999988754
No 175
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=94.58 E-value=0.059 Score=38.91 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=32.8
Q ss_pred HHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 174 ~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
+.|..|.++ | +...+|..||..+-+|.+.|++||-
T Consensus 11 ~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 11 ELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 679999997 8 8999999999999999999999995
No 176
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.50 E-value=0.12 Score=41.55 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=46.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC------CeEEEe-CC---E-ecCCC-------------CChhhhccCC
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLIH-QG---K-VLKDV-------------TTLEENKVAE 66 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~------~qkLIy-~G---K-iL~D~-------------~tL~dygIk~ 66 (308)
..+.+.|-.++||.++|+||-+..-+. +|.. .+.|-| .| + +|.|. .||..|+|.+
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 347788889999999999997665332 4443 456655 23 3 35441 3699999999
Q ss_pred CCEEEEEEec
Q 021760 67 NSFVVVMLTK 76 (308)
Q Consensus 67 g~~I~v~v~k 76 (308)
|.+|.++-+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999887543
No 177
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.31 E-value=0.28 Score=37.62 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=47.6
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCEecCCCCChhhhccC
Q 021760 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY------PASQQMLIHQGKVLKDVTTLEENKVA 65 (308)
Q Consensus 1 M~I~Vktl~------g-k~~~leV~~~~TV~~LK~~I~~~~g~--~~i------p~~~qkLIy~GKiL~D~~tL~dygIk 65 (308)
|+|+||.+. | ....+++....||.+|.+.+...... ..+ ......+..||+.+.. ++-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888653 3 46778887788999999999876320 000 0234567789988763 56789
Q ss_pred CCCEEEEE
Q 021760 66 ENSFVVVM 73 (308)
Q Consensus 66 ~g~~I~v~ 73 (308)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998886
No 178
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.89 E-value=0.18 Score=47.55 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=54.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC-CCCCCCeEEEe------CCEecCCCCChhhhccCCCCEEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD-VYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~-~ip~~~qkLIy------~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
.++|... +.+-++.++++.||.++..+|.++.... ..+.++--|.. +|+-|++.++|+.|++.+|+.|...
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 3455543 6677899999999999999998876410 12455666765 5677999999999999999988875
No 179
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.55 E-value=0.19 Score=36.48 Aligned_cols=65 Identities=6% Similarity=0.183 Sum_probs=44.8
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk-~~~leV~~~~TV~~LK~~I~~~~g~~~ip~--~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
|+|+||.+..- .-.+++ ...||.+|++.+....+ +.. ....+..||+.+.+ .+.-+++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 88999976431 134666 56799999999986533 221 45667778888543 24568999999886
No 180
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=91.57 E-value=1.8 Score=32.11 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=41.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCC-----C-----CCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVY-----P-----ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~i-----p-----~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
+...+++....||.+|++.+...+.. + . .....+..||+.... ++-|++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~--~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPA--LESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGG--GHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcH--HHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 56788888788999999999876430 1 0 023577789988865 4568899999886
No 181
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=91.43 E-value=0.55 Score=35.57 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=53.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
+...+|-..++..||+.++.+.| +.-+...+...+..|+++++|-+-+|+-...|.+.+.-+
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 34466778899999999999999 778888998899889999999999999888888877543
No 182
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=91.00 E-value=0.31 Score=37.04 Aligned_cols=57 Identities=9% Similarity=0.239 Sum_probs=41.1
Q ss_pred CCCcEEEEEeCCC-CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 8 LKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 8 l~gk~~~leV~~~-~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
++|+. +++... .||.+|.+.+ + ++.....+..||+++..+ ...+.-|++||.|.|+-
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 35654 445665 7999998865 5 666777888999998543 34456799999998873
No 183
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=90.52 E-value=1.1 Score=40.39 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=55.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEe---CC--EecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIH---QG--KVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~-~~qkLIy---~G--KiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|.|.|..++| ++.+.|+.+.|+.+|-+.|....| +.. +..-|.| +| ..|+.++.|.+.+++.+..+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4678888888 788999999999999999999999 432 3345554 34 347888999988777666666666
Q ss_pred ecCC
Q 021760 75 TKSK 78 (308)
Q Consensus 75 ~k~k 78 (308)
+++-
T Consensus 78 r~kf 81 (294)
T 1ef1_A 78 RAKF 81 (294)
T ss_dssp EESS
T ss_pred EEEE
Confidence 6554
No 184
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=90.49 E-value=0.41 Score=36.30 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=32.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-eCC
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQG 50 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI-y~G 50 (308)
||+|- .++..|.|.|..+.+..+||.+|..+.. + +.+.|+ |++
T Consensus 14 KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ykd 57 (85)
T 1ip9_A 14 KIKFY-YKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQTKLF 57 (85)
T ss_dssp EEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEECCS
T ss_pred EEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEEecC
Confidence 44443 3567899999999999999999999987 4 455554 443
No 185
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=90.43 E-value=0.22 Score=42.01 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHH
Q 021760 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210 (308)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL 210 (308)
.+...|.+|++.| -|+|++|+.||+.+-.|.++|+--|
T Consensus 101 ~R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 101 TRRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHH
Confidence 3456778899988 3499999999999999999998655
No 186
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=90.18 E-value=0.21 Score=52.70 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhcCC-hHHHHHHHHhCCCC
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRAAYNN-PERAVEYLYSGIPE 216 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrAafnN-pdRAvEYL~~GIP~ 216 (308)
+..|+.|++|| |++..+++||.+.-|+ .++|.+||+..+-+
T Consensus 653 ~~~l~~L~~mG---f~~~~~~kal~~t~n~~~e~a~~wl~~hmdd 694 (854)
T 3ihp_A 653 ESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 694 (854)
T ss_dssp CHHHHHHHHHT---CCHHHHHHHHHHTTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcC---CCHHHHHHHHhhcCCCchHHHhHHHhhccCc
Confidence 57899999999 9999999999999886 99999999988653
No 187
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=90.18 E-value=1.3 Score=40.54 Aligned_cols=74 Identities=15% Similarity=0.054 Sum_probs=55.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCeEEEe--CCE--ecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIH--QGK--VLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip-~~~qkLIy--~GK--iL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|.+.|..++| ++.++|+.+.|+.+|-+.|....| +. .+..-|.| +|. -|+.++.|.+.+++.+..+.+..+
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3577888898 788999999999999999999999 43 33345544 453 378889999987766666656655
Q ss_pred cCC
Q 021760 76 KSK 78 (308)
Q Consensus 76 k~k 78 (308)
++-
T Consensus 99 ~kf 101 (314)
T 1h4r_A 99 AKF 101 (314)
T ss_dssp ESS
T ss_pred EEE
Confidence 543
No 188
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.94 E-value=0.55 Score=35.48 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=37.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G 50 (308)
+|+|.. .-++.|+|....+..+|+++|.++.+ ++.+..+|.|+.
T Consensus 7 ~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRP 50 (83)
T ss_dssp EEEEES--SSEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECC
T ss_pred EEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeC
Confidence 445553 36899999999999999999999999 888999999965
No 189
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=89.91 E-value=0.95 Score=36.76 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=41.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH----hCCCCCCC----CCeEEEe-C---CEecCC----------C----CChhhhcc
Q 021760 11 THFEIEVKPEDKVSDVKKNIETV----QGSDVYPA----SQQMLIH-Q---GKVLKD----------V----TTLEENKV 64 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~----~g~~~ip~----~~qkLIy-~---GKiL~D----------~----~tL~dygI 64 (308)
..+.+.|-.++||.++|+||-+. .| +|. +.+.|-| . |++|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 46888888999999999999544 35 544 3344544 1 233322 1 36788999
Q ss_pred CCCCEEEEE
Q 021760 65 AENSFVVVM 73 (308)
Q Consensus 65 k~g~~I~v~ 73 (308)
.+|.+|-++
T Consensus 116 ~Dgatlal~ 124 (126)
T 3kuz_A 116 SNGSTIKVF 124 (126)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEe
Confidence 999999765
No 190
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=89.33 E-value=1.1 Score=45.39 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=45.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCE-ecCCC-------------CChhhhccCC
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~------~~qkLIy----~GK-iL~D~-------------~tL~dygIk~ 66 (308)
..+.+.|-.++||.++|+||-+..-++ +|. +.+.|-| .|+ +|.|. .||..|+|.+
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 357788889999999999998654322 443 3455655 244 46553 3799999999
Q ss_pred CCEEEEEEec
Q 021760 67 NSFVVVMLTK 76 (308)
Q Consensus 67 g~~I~v~v~k 76 (308)
|.+|.++-+.
T Consensus 353 ga~v~L~p~~ 362 (644)
T 3hm6_X 353 GATVALVPCL 362 (644)
T ss_dssp TCEEEEEEC-
T ss_pred CcEEEEEecc
Confidence 9999876543
No 191
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=88.83 E-value=0.3 Score=33.59 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHhcCCccCHHHH--HHHHHHhcCChHHHHHHH
Q 021760 170 SNLEATVQQILDMGGGSWDRETV--IRALRAAYNNPERAVEYL 210 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv--~~ALrAafnNpdRAvEYL 210 (308)
+..++.|.+|++|| |+-|-- .+.|.+.-+|-.+|++-|
T Consensus 8 ~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 8 PRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHh
Confidence 34789999999999 976654 699999999999999987
No 192
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=88.65 E-value=1.3 Score=33.19 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=44.4
Q ss_pred CEEEEEeCC------CcEEEEEeCCCCcHHHHHHHHHHHhCC----------CCCCCCCeEEEeCCEecCCCCChhhhcc
Q 021760 1 MKVFVKTLK------GTHFEIEVKPEDKVSDVKKNIETVQGS----------DVYPASQQMLIHQGKVLKDVTTLEENKV 64 (308)
Q Consensus 1 M~I~Vktl~------gk~~~leV~~~~TV~~LK~~I~~~~g~----------~~ip~~~qkLIy~GKiL~D~~tL~dygI 64 (308)
|+|+|+.+. |+...++++ ..||.+|++.+...+.. +.-......+..||+...+..- .++-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 788888542 333346654 57999999999877420 0000113566778887754322 24568
Q ss_pred CCCCEEEEEE
Q 021760 65 AENSFVVVML 74 (308)
Q Consensus 65 k~g~~I~v~v 74 (308)
++||.|.++-
T Consensus 79 ~~gDeV~i~P 88 (93)
T 3dwg_C 79 ADGDSVTILP 88 (93)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999998873
No 193
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=88.39 E-value=1.1 Score=31.82 Aligned_cols=63 Identities=17% Similarity=0.084 Sum_probs=42.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|.|+|...+|+. +++....|+.+|-+.|....+ ....-...+|++.+-+ +-|++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 788888768876 456678899999888754332 1223334689877654 45667888877653
No 194
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=88.36 E-value=0.63 Score=32.90 Aligned_cols=61 Identities=7% Similarity=0.202 Sum_probs=42.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++-
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 55554 46654 556678999998876 4 556777888999988532 23345688999998763
No 195
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=88.36 E-value=1.8 Score=43.81 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=46.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCE-ecCCC-------------CChhhhccCC
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip------~~~qkLIy----~GK-iL~D~-------------~tL~dygIk~ 66 (308)
..+.+.|-.++||.++|+||-+..-++ +| ++++.|-| .|+ +|.|. .||.+|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 468888989999999999997665322 43 34556654 233 35442 3689999999
Q ss_pred CCEEEEEEec
Q 021760 67 NSFVVVMLTK 76 (308)
Q Consensus 67 g~~I~v~v~k 76 (308)
|.+|.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987543
No 196
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=87.87 E-value=1.5 Score=44.06 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=56.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCeEEEeC---C--EecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip-~~~qkLIy~---G--KiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|.|.|..++| ++.|.|+.+.|+.+|-..|+...| +. .+..-|.|. | ..|+.++.|.+.+++.+..+.|.+
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~Lg---L~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIG---LREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcC---CCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 3577888888 788999999999999999999999 43 334566552 2 457888999988877777666666
Q ss_pred ecCCC
Q 021760 75 TKSKV 79 (308)
Q Consensus 75 ~k~k~ 79 (308)
+++--
T Consensus 81 Rvkfy 85 (575)
T 2i1j_A 81 RAKFY 85 (575)
T ss_dssp EESSC
T ss_pred EEEEc
Confidence 65543
No 197
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=87.67 E-value=0.61 Score=37.09 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=41.7
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CCE------ecCCCCC---h
Q 021760 1 MKVFVKTLK------G--THFEIEVKP---EDKVSDVKKNIETVQGSDVYPASQQMLIH-QGK------VLKDVTT---L 59 (308)
Q Consensus 1 M~I~Vktl~------g--k~~~leV~~---~~TV~~LK~~I~~~~g~~~ip~~~qkLIy-~GK------iL~D~~t---L 59 (308)
|+|+|+... | +.++|++.. ..||.+|.+.|.+.+. ..+-+|+. +|+ +|-++.. |
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678887542 3 366788873 3699999999987742 22333322 121 2322322 2
Q ss_pred --hhhccCCCCEEEEEE
Q 021760 60 --EENKVAENSFVVVML 74 (308)
Q Consensus 60 --~dygIk~g~~I~v~v 74 (308)
.++-+++||.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 357799999988864
No 198
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=87.60 E-value=0.65 Score=34.39 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=44.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip-~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+| +|+.+.+......||.+|.+. .+ ++ ....-+.+||.++..+ ...++-+++||.|.++-
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~----l~---~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSA----LK---VAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHH----HT---CSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHH----cC---CCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 66665 476554421156799998775 45 66 6777788999998543 46677899999998863
No 199
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=86.81 E-value=2.4 Score=39.70 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=54.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---------EecCCCCChhhhccCCCCEEEE
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------KVLKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G---------KiL~D~~tL~dygIk~g~~I~v 72 (308)
.+.|..++|....+.|+.+.|+.+|-+.|+...|. ...+..-|.+.. +-|+.+++|.+.++.....+++
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 57788899999999999999999999999999983 234456666532 3467778888877766666665
Q ss_pred EEe
Q 021760 73 MLT 75 (308)
Q Consensus 73 ~v~ 75 (308)
.++
T Consensus 165 rvK 167 (371)
T 3ivf_A 165 RRK 167 (371)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
No 200
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=86.62 E-value=0.67 Score=33.84 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=43.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|+| +|+.+.+ ...||.+|.+. .+ ++....-+.+||.++..+ ...++-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTE----LD---CTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHH----TT---CCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHH----cC---CCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 55655 4765544 56899998764 56 777888888999988532 35566799999998873
No 201
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=86.33 E-value=2.8 Score=38.19 Aligned_cols=71 Identities=14% Similarity=-0.011 Sum_probs=50.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--EecCCCCChhhhccCCCCEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~---G--KiL~D~~tL~dygIk~g~~I~v~ 73 (308)
|.+.|..++|....++|+...|+.+|-+.|....|. ...+..-|.|. | ..|+.++.|.+........+++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL--LEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTC--SSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 568899999999999999999999999999999992 22333555542 3 34788888888754333344443
No 202
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=84.87 E-value=0.6 Score=41.26 Aligned_cols=23 Identities=13% Similarity=0.514 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHH
Q 021760 173 EATVQQILDMGGGSWDRETVIRALRA 198 (308)
Q Consensus 173 e~~v~~i~~MG~~~f~r~qv~~ALrA 198 (308)
+..|+++++|| |+|++|+.||+-
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~ 192 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRR 192 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHH
Confidence 67999999999 999999999964
No 203
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=84.68 E-value=0.26 Score=39.11 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=41.3
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCcHHHHHHHHHHHhCCCCCCCCCeEEE-eCC--E------ecCCCCCh--
Q 021760 1 MKVFVKTLK------GTHFEIEVKP----EDKVSDVKKNIETVQGSDVYPASQQMLI-HQG--K------VLKDVTTL-- 59 (308)
Q Consensus 1 M~I~Vktl~------gk~~~leV~~----~~TV~~LK~~I~~~~g~~~ip~~~qkLI-y~G--K------iL~D~~tL-- 59 (308)
|+|+||... |+...+++.. ..||.+|-+.|.+.+. ..+-+|+ -+| + +|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 567777543 4555677763 2499999888887643 2333333 223 1 34344433
Q ss_pred ---hhhccCCCCEEEEEE
Q 021760 60 ---EENKVAENSFVVVML 74 (308)
Q Consensus 60 ---~dygIk~g~~I~v~v 74 (308)
.+|-+++||.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 346799999987753
No 204
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=84.24 E-value=2.2 Score=30.58 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=39.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe--EEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~q--kLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
+...+++....||.+|.+.+...+.. .... .+..||++...+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667777778999999998776320 1233 778899998753 578999998886
No 205
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=83.63 E-value=4.1 Score=31.05 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=41.9
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---------CCe-------EEEeCCEecCCCC
Q 021760 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGSDVYPA---------SQQ-------MLIHQGKVLKDVT 57 (308)
Q Consensus 1 M~I~Vktl~------g-k~~~leV~~~~TV~~LK~~I~~~~g~~~ip~---------~~q-------kLIy~GKiL~D~~ 57 (308)
|+|+|+.+. | +.+.++ ..||.+|.+.+...... +.. ... .+..||+......
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~--l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPA--LKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGG--GTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChh--HHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 688888653 3 344444 57999999999877420 111 123 5677887663221
Q ss_pred ChhhhccCCCCEEEEE
Q 021760 58 TLEENKVAENSFVVVM 73 (308)
Q Consensus 58 tL~dygIk~g~~I~v~ 73 (308)
-.++-+++||.|.++
T Consensus 79 -~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 79 -GLETLLKDSDEIGIL 93 (99)
T ss_dssp -STTSCCCTTEEEEEE
T ss_pred -CCCCCCCCCCEEEEE
Confidence 124468999998886
No 206
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=83.56 E-value=1.7 Score=33.23 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=40.5
Q ss_pred CEEEEEeC------C-C-cEEEEEeC--CCCcHHHHHHHHHHHhCCCCCCC--------C----CeEEEeCCEecCCCCC
Q 021760 1 MKVFVKTL------K-G-THFEIEVK--PEDKVSDVKKNIETVQGSDVYPA--------S----QQMLIHQGKVLKDVTT 58 (308)
Q Consensus 1 M~I~Vktl------~-g-k~~~leV~--~~~TV~~LK~~I~~~~g~~~ip~--------~----~qkLIy~GKiL~D~~t 58 (308)
|+|+|+.+ . | +.+++++. ...||.+|.+.+.++... ... . ...+..||+..+ .
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~--~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~ 76 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMIN--NPNDVSIFIEDDSIRPGIITLINDTDWE---L 76 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCS--SGGGHHHHEETTEECTTEEEEETTEEGG---G
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCch--hhHHHhhhccCCccccCeEEEECCEEcc---c
Confidence 57787743 2 2 45677776 678999999999887531 100 0 011233443211 1
Q ss_pred h--hhhccCCCCEEEEE
Q 021760 59 L--EENKVAENSFVVVM 73 (308)
Q Consensus 59 L--~dygIk~g~~I~v~ 73 (308)
+ .++-|++||.|.++
T Consensus 77 ~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 77 EGEKDYILEDGDIISFT 93 (99)
T ss_dssp GTGGGCBCCTTCEEEEE
T ss_pred cCCCCcCcCCCCEEEEE
Confidence 2 35679999998876
No 207
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=82.86 E-value=1.1 Score=31.82 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=25.2
Q ss_pred cCCcHHHHHHHHHHhcCCccCHHHHHHHHHHh
Q 021760 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAA 199 (308)
Q Consensus 168 ~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAa 199 (308)
.+...++.|.-|+.+| |.+.++.+|++..
T Consensus 13 ~~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 13 ESEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CCHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 3445688999999999 9999999999876
No 208
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=82.59 E-value=3.8 Score=33.25 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=40.8
Q ss_pred EEEeCC----CCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCEec-----CC--CCChhhhccCCCCEEEEEEe
Q 021760 14 EIEVKP----EDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVL-----KD--VTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 14 ~leV~~----~~TV~~LK~~I~~~~g~~~ip~~~qkLIy--~GKiL-----~D--~~tL~dygIk~g~~I~v~v~ 75 (308)
.|.|+. ..|+.+|-+.|..++| +. +.+-++- ..+.| +| +++|+++||++|++|.|+--
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 355553 4699999888988888 54 3454442 33444 33 47999999999999988753
No 209
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=81.76 E-value=5.3 Score=31.03 Aligned_cols=74 Identities=19% Similarity=0.098 Sum_probs=50.3
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--e----CCEecCCCCChhhh----ccCCCCEEEE
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H----QGKVLKDVTTLEEN----KVAENSFVVV 72 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y----~GKiL~D~~tL~dy----gIk~g~~I~v 72 (308)
|+|-..+|....|.|+..+|+.++-+++..+.++. . ...--|+ + --+.|+|+..|-+. .+..+..|++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~-~-~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL-S-DETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC-C-CCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC-C-CCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 45556789999999999999999999999998742 1 2222232 1 23778998876554 4555666666
Q ss_pred EEecCC
Q 021760 73 MLTKSK 78 (308)
Q Consensus 73 ~v~k~k 78 (308)
.-+..|
T Consensus 90 ~kr~~K 95 (100)
T 1wgr_A 90 RKNFAS 95 (100)
T ss_dssp CSCCSS
T ss_pred ecchhc
Confidence 444333
No 210
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=81.71 E-value=4 Score=31.08 Aligned_cols=45 Identities=7% Similarity=0.105 Sum_probs=35.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEEeCC
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQG 50 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~-~qkLIy~G 50 (308)
+|++. .+|..+.+.|+++.+..+|.++|.+.++ +..+ ...|-|..
T Consensus 8 kvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~D 53 (89)
T 1vd2_A 8 RVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWID 53 (89)
T ss_dssp EEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECC
T ss_pred EEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEEC
Confidence 44444 4678889999999999999999999988 6544 46777765
No 211
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=80.78 E-value=3.8 Score=30.82 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
+..-+.+|-+.=|.++++.+.+.|.-..-+|++||+.|+|+.
T Consensus 34 L~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 34 LYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 445567777765678899999888888999999999999964
No 212
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=80.45 E-value=1.3 Score=34.46 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=40.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-----------eEEEeCC-EecC------CCCChhhhccCCCCEEEEE
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ-----------QMLIHQG-KVLK------DVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~-----------qkLIy~G-KiL~------D~~tL~dygIk~g~~I~v~ 73 (308)
...|+|+++.|+.+|-+.|.+.-. +.... ..|++.+ ..|+ =+++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 346899999999999999988533 22222 2333333 2332 2577999999999998883
No 213
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=79.23 E-value=2.3 Score=29.76 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=39.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
.+|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4676654 4 567999998876 4 556677788999988533 23344689999998873
No 214
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=78.20 E-value=18 Score=27.20 Aligned_cols=72 Identities=18% Similarity=0.115 Sum_probs=45.8
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCC-CCCCC-CeE---EEe-CCEecCCCCChhhhccCCCCEEEEE
Q 021760 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSD-VYPAS-QQM---LIH-QGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~-~~~TV~~LK~~I~~~~g~~-~ip~~-~qk---LIy-~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
|+|+|+. .+..+.|-+. ...||..|-++--.++.+. ....+ ... |-+ .|-+|+.+..|.+. +.++++|+-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999995 4667777774 4569998866554332210 02122 222 223 78899999999997 6788887765
Q ss_pred E
Q 021760 74 L 74 (308)
Q Consensus 74 v 74 (308)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 4
No 215
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=77.05 E-value=1 Score=31.23 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHh--cCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 170 SNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 170 ~~~e~~v~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
.+.++.|+.|.+| . +|||-++.-|++--+|-|-+|+.||.
T Consensus 10 ~e~~~~~~~L~~MFP~---lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPD---MDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHSTT---SCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHccc---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3578899999999 6 89999999999999999999999973
No 216
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=76.53 E-value=9.8 Score=27.23 Aligned_cols=57 Identities=5% Similarity=0.086 Sum_probs=37.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCC--CCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 11 THFEIEVKPEDKVSDVKKNIETVQGS--DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 11 k~~~leV~~~~TV~~LK~~I~~~~g~--~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
+.+.++ ....||.+|++.+...... ..+......+..||+.... +.-|++||.|.++
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 355565 5667999999998754210 0011234567889998853 4568899999886
No 217
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=74.52 E-value=3.9 Score=35.60 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=32.9
Q ss_pred HHHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 173 e~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
-.+|.+|-++ | ..=-+|..||..+-+|-|.|+|||--
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3678999987 7 77889999999999999999999963
No 218
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=72.81 E-value=4.1 Score=37.56 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 174 ~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
.+|.+|-++ | +.=-+|..||..+-+|-|.|+|||--
T Consensus 6 ~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578899887 7 88889999999999999999999983
No 219
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=72.35 E-value=11 Score=27.57 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=36.9
Q ss_pred EEeCCCCcHHHHHHHHHHHhCC--C--CC----CCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 15 IEVKPEDKVSDVKKNIETVQGS--D--VY----PASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 15 leV~~~~TV~~LK~~I~~~~g~--~--~i----p~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
++++...||.+|.+.+...... . .+ ......+..||+.+.... -.++-+++||.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 4555568999999999876310 0 00 013556778998775221 234468999998886
No 220
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=72.10 E-value=14 Score=34.17 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC-Eec-CCCCChhhhccC
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVL-KDVTTLEENKVA 65 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G-KiL-~D~~tL~dygIk 65 (308)
-....+.+.+..|+.+||++|+..++ ++++.|.|+|.+ +.. +.......|.-.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~~ 375 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKT 375 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCCC
Confidence 34567888999999999999999999 999999999998 444 444556665443
No 221
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=71.08 E-value=5 Score=31.27 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=31.4
Q ss_pred HHHHHHHHH-hcCCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 173 EATVQQILD-MGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 173 e~~v~~i~~-MG~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
++.|.-+|+ +| -.|++.++||+.+-||.=.|+-||.
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 466888777 79 9999999999999999999998873
No 222
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=70.61 E-value=10 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=32.1
Q ss_pred HHHHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 172 LEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 172 ~e~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
.++.|.+.+++ | -+++.++.-|.++-.|.++||...+
T Consensus 5 ~~~~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG---AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56789999997 5 6899999999999999999997544
No 223
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=70.54 E-value=1.5 Score=31.93 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=35.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
.+++....||.+|.+.+ + ++.....+..+|+++..+ +-|++||.|.++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 34566678999988754 4 556677788999998765 568888887664
No 224
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=70.33 E-value=15 Score=28.61 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=46.3
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCEe--cCCCCChhhhccCCCCEEEEEEe
Q 021760 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKV--LKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 5 Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI---y~GKi--L~D~~tL~dygIk~g~~I~v~v~ 75 (308)
|-..+...+.+.+..+.|+.+|+..+.++.+ +..+.++|+ ++|.. |++++.--.-.+.-+..|++..+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3444566778888899999999999999998 655578775 67743 45544322223444667777654
No 225
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=70.08 E-value=3.8 Score=33.21 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=28.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 021760 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy 48 (308)
.+.|-.+.|+.+||..|++.+| +++++|||-+
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhC---CCcccEEEEE
Confidence 5678889999999999999999 9999999953
No 226
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=69.94 E-value=4.6 Score=41.39 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=42.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC-EecCCCCChhhhc
Q 021760 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVLKDVTTLEENK 63 (308)
Q Consensus 9 ~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G-KiL~D~~tL~dyg 63 (308)
..+.+.+.+.++.|+.+||..|+..+| ++.+.|.|++.+ ..|+.......|-
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhhe
Confidence 345567888999999999999999999 999999998854 4566666777663
No 227
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=69.51 E-value=6.5 Score=30.27 Aligned_cols=60 Identities=8% Similarity=-0.067 Sum_probs=42.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEE
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v 74 (308)
++.+.+++....||.++-+...-......+.....++-.+|++.. .++-+++||.|-++-
T Consensus 25 q~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 25 YYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred CEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 345677888999999998887542221014445678888898887 445588999998863
No 228
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=68.74 E-value=11 Score=26.44 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=38.8
Q ss_pred cccCCcHHHHHHHHHHh--cCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 166 LVAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 166 l~~g~~~e~~v~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
+-.-+.++.+|+.+.+| - ++++++..-|+-. +|.|.-+|=+|.|
T Consensus 11 ~~~~sql~~Mve~V~~mFPq---v~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 11 LYFQGQLNAMAHQIQEMFPQ---VPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHCTT---SCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HhhhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 33456789999999999 5 7999999999998 9999999999988
No 229
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=68.08 E-value=11 Score=29.18 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhC
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQG 35 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g 35 (308)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 45788999999999999999999987
No 230
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=68.05 E-value=40 Score=26.11 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=53.1
Q ss_pred EEEEEeCCC---cEEEEEeCCCCcHHHHHHHHHHHhCCCCCC--CCCeEEEeCC---EecCCCCChhhhccCCCCEEEEE
Q 021760 2 KVFVKTLKG---THFEIEVKPEDKVSDVKKNIETVQGSDVYP--ASQQMLIHQG---KVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 2 ~I~Vktl~g---k~~~leV~~~~TV~~LK~~I~~~~g~~~ip--~~~qkLIy~G---KiL~D~~tL~dygIk~g~~I~v~ 73 (308)
+|+|..++. ..+++.|..+.-|+-|.-+|-++.+ ++ -..--|-.-- -.|+-..+|..|||.-+..+++.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~---i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMN---IAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHC---CSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcc---cccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 678887553 5688999999999999999987765 33 2334444322 34688899999999999999887
Q ss_pred Ee
Q 021760 74 LT 75 (308)
Q Consensus 74 v~ 75 (308)
-.
T Consensus 98 p~ 99 (102)
T 2kmc_A 98 PQ 99 (102)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 231
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=65.72 E-value=32 Score=25.73 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=48.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCC---CCCCeEEEeCC--EecCCCCChhhhccCCCCEEEEEEe
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVY---PASQQMLIHQG--KVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~-g~~~i---p~~~qkLIy~G--KiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
..+.||..+|+.++-++++... |+. + |-.-.+..++| +.|..+.|+.+-||+.-+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrR-V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRR-VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTT-BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4568999999999999997543 433 3 12235777999 9999999999999999999988753
No 232
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=64.85 E-value=18 Score=26.46 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=44.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
.|+|.+.+|+.+ ++....|+.++=..|....+. .-.--..+|+...-+ +-+++|+.|.++..+
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~-----~~v~AkVNG~~v~L~-----~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGN-----RMIGAKVDGRIVPID-----YKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHH-----TEEEEEETTEEECTT-----CBCCTTCBEEEEECC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhc-----ceEEEEECCEEcCCC-----cccCCCCEEEEEccC
Confidence 478888888765 456778999999888776651 222334588876543 457889999887643
No 233
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=63.03 E-value=40 Score=25.46 Aligned_cols=58 Identities=7% Similarity=-0.011 Sum_probs=42.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEec-CCCCChhhh--ccCCCCEEEEEEec
Q 021760 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL-~D~~tL~dy--gIk~g~~I~v~v~k 76 (308)
.+-|..+.|+.+|...|.++.+ + +.+-|+.+...+ ..+.+++++ ..+++++|+|.-+.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYCA 86 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEEC
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEeC
Confidence 4567889999999999999988 5 566666677654 557777665 33467888887653
No 234
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=62.92 E-value=37 Score=25.43 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=49.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCCC--CCCeEEEeCCEe--cCCCCChhhhccCCCCEEEEEE
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVYP--ASQQMLIHQGKV--LKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~-g~~~ip--~~~qkLIy~GKi--L~D~~tL~dygIk~g~~I~v~v 74 (308)
..+.||..+|+.++-+++.... |.. +. +.-.|..++|.. |.++.++.+-||+.-+.|.++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrr-v~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRR-VAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTT-BCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-eCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4568999999999999997543 433 21 235788899988 9999999999999999998875
No 235
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=62.45 E-value=23 Score=35.02 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=42.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC---CCCeEE--EeCCEe---cCCCCChhhhccCCCCEEEE
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQML--IHQGKV---LKDVTTLEENKVAENSFVVV 72 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip---~~~qkL--Iy~GKi---L~D~~tL~dygIk~g~~I~v 72 (308)
.+.|-|..+.||.+|-+.+.++.+ ++ ...+|| +|+||+ +.++.+|..++=....+|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 466777888999999999998887 54 466777 589975 67888888754322445544
No 236
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.87 E-value=12 Score=26.09 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 171 NLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 171 ~~e~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
..++.|++.|++ | =+++.++.-|.++-+|.++||...+.
T Consensus 14 ~~~e~i~qF~~iTg---~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 14 ALKGLIQQFTTITG---ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHTC---CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 446789999987 6 67999999999999999999986554
No 237
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=61.57 E-value=6.9 Score=32.92 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=26.4
Q ss_pred CCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 184 GGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 184 ~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
+|++.+.++.+||+.+-.|-++||.+++
T Consensus 72 ~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci 99 (162)
T 4dbg_B 72 LGAFSCQEARRAWLDRHGNLDEAVEECV 99 (162)
T ss_dssp GCCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHccCChHHHHHHHH
Confidence 6899999999999999999999998876
No 238
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=61.28 E-value=20 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=25.1
Q ss_pred EEEEEeCCCcE-EEEEeC-CCCcHHHHHHHHHHHhC
Q 021760 2 KVFVKTLKGTH-FEIEVK-PEDKVSDVKKNIETVQG 35 (308)
Q Consensus 2 ~I~Vktl~gk~-~~leV~-~~~TV~~LK~~I~~~~g 35 (308)
.|+.|....+. ..|.++ ...+|.+||+.|..+.+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 35667666554 457777 45699999999998887
No 239
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=58.42 E-value=8.7 Score=26.83 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=23.4
Q ss_pred hHHhhChHHHHHHHHHHHhChhhHHHHHh
Q 021760 277 LDFLRNSQQFQALRTMVQANPQILQQWAL 305 (308)
Q Consensus 277 l~~Lr~~pqf~~lRq~vqqnP~~L~~~L~ 305 (308)
+..+-++|+|.++=+-|++||+.+..++.
T Consensus 14 ~~~~m~dP~~~~~lq~i~~NP~~~~~~~~ 42 (62)
T 2lnm_A 14 VAMAFQNPRVQAALMECSENPMNIMKYQN 42 (62)
T ss_dssp HHHHTTSHHHHHHHHHHTTCGGGHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHCHHHHHHHHh
Confidence 44455779999999999999999987653
No 240
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=58.40 E-value=48 Score=27.26 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=44.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCC----eEEEe-----------------CCEec-CCCCChhhhccCCCCE
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ----QMLIH-----------------QGKVL-KDVTTLEENKVAENSF 69 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~----qkLIy-----------------~GKiL-~D~~tL~dygIk~g~~ 69 (308)
.+.|-...+.|+.+|-..|.+.... .+... .+||| .|+.- +|++||.+++..-||+
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 3667778999999999999876431 11111 23343 22222 5789999999999999
Q ss_pred EEEEEecC
Q 021760 70 VVVMLTKS 77 (308)
Q Consensus 70 I~v~v~k~ 77 (308)
|.|-+..+
T Consensus 133 idvaI~pP 140 (143)
T 4a6q_A 133 LDIAITPP 140 (143)
T ss_dssp EEEEEECG
T ss_pred EEEEEeCC
Confidence 99988654
No 241
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=58.27 E-value=38 Score=27.30 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=40.8
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-eCCEec-CCCCChhhh--cc-CCCCEEEEEEe
Q 021760 16 EVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGKVL-KDVTTLEEN--KV-AENSFVVVMLT 75 (308)
Q Consensus 16 eV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI-y~GKiL-~D~~tL~dy--gI-k~g~~I~v~v~ 75 (308)
-|..+.||.+|...|.+..+ +.+++--++ |.++.| .-+.+++++ .- .++.+|+|..+
T Consensus 58 lVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 58 LVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 46778899999999999998 666655545 655545 667777776 22 34678888765
No 242
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=57.58 E-value=19 Score=35.43 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=43.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeC--C--EecCCCCChhh
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQ--G--KVLKDVTTLEE 61 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~--~~qkLIy~--G--KiL~D~~tL~d 61 (308)
|.+.|..++|....+.|+...|+.+|-+.|..+.| +.. +..-|.+. + +.|+++..+-|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 35788889999999999999999999999999999 643 44556542 2 23666665544
No 243
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=56.80 E-value=36 Score=26.45 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=39.6
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCEecCCCCChhhh--cc-CCCCEEEEEEe
Q 021760 16 EVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLT 75 (308)
Q Consensus 16 eV~~~~TV~~LK~~I~~~~g~~~ip~~~-qkLIy~GKiL~D~~tL~dy--gI-k~g~~I~v~v~ 75 (308)
-|..+.||.+|...|....+ +.+++ +-|+.++....-+.+|+++ .. .++++|+|..+
T Consensus 49 lVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 49 LVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp EEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 44567899999999999987 55554 4555566655667778776 22 34678888653
No 244
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.77 E-value=62 Score=24.53 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCEecCCCCChhhhccCCCCEEEEEEec
Q 021760 21 DKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~GKiL~D~~tL~dygIk~g~~I~v~v~k 76 (308)
.+..+|+.|....++ ++....+|+ ..|.+++|+.-+..+ +++++.+++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 379999999999988 765556664 368888877655443 25566665554
No 245
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=56.57 E-value=42 Score=26.37 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=40.9
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCEecCCCCChhhh--cc-CCCCEEEEEEec
Q 021760 16 EVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (308)
Q Consensus 16 eV~~~~TV~~LK~~I~~~~g~~~ip~~~-qkLIy~GKiL~D~~tL~dy--gI-k~g~~I~v~v~k 76 (308)
-|..+.||.+|...|....+ +.+++ +-|+.++....-+.+|+++ .. .++++|+|..+.
T Consensus 50 lVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 50 LVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 35567899999999999988 55554 4555566655667777776 22 347789988764
No 246
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=56.41 E-value=47 Score=26.24 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=41.1
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCEecCCCCChhhh--cc-CCCCEEEEEEec
Q 021760 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (308)
Q Consensus 15 leV~~~~TV~~LK~~I~~~~g~~~ip~~~-qkLIy~GKiL~D~~tL~dy--gI-k~g~~I~v~v~k 76 (308)
+-|..+.||.+|...|.+..+ +.+++ +-|+.++....-+.+++++ .- .++++|+|..+.
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 336788999999999999988 65655 4444466555667777765 22 346688887654
No 247
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=55.83 E-value=43 Score=26.70 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=47.1
Q ss_pred EEEEEeCCCCcHHHHHHHHH-HHhCCC----CCCCCCeEEEeCCEec--CCCCChhhhccCCCCEEEEE
Q 021760 12 HFEIEVKPEDKVSDVKKNIE-TVQGSD----VYPASQQMLIHQGKVL--KDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~-~~~g~~----~ip~~~qkLIy~GKiL--~D~~tL~dygIk~g~~I~v~ 73 (308)
-+.+-|.+.++..+|-+.+- ...+.+ .|.-++-....+|+.. +.+++|.+.||..++.|.+.
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 36789999999999988774 333311 1444566788899998 45789999999999998875
No 248
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=54.80 E-value=56 Score=25.85 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=42.7
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCEecCCCCChhhh--cc-CCCCEEEEEEec
Q 021760 16 EVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (308)
Q Consensus 16 eV~~~~TV~~LK~~I~~~~g~~~ip~~~-qkLIy~GKiL~D~~tL~dy--gI-k~g~~I~v~v~k 76 (308)
-|..+.||.+|...|....+ +.+++ +-|+.++....-+.+++++ .- .++++|+|..+.
T Consensus 53 lVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 53 LVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 46778899999999999988 66665 5555588866778887765 22 346688887654
No 249
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=53.98 E-value=19 Score=24.73 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=32.2
Q ss_pred cccccCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 164 s~l~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
|.++.+..+.+.+.+ |+|+-+.+||+..-+|-.+|.+.| ||.
T Consensus 4 ~~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 4 SYLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp CTTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HHhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 344555566665543 789999999999999999999987 554
No 250
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=53.71 E-value=15 Score=28.50 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCccCHHHHHHHHHHh-------cCChHHHHHHHHhC
Q 021760 175 TVQQILDMGGGSWDRETVIRALRAA-------YNNPERAVEYLYSG 213 (308)
Q Consensus 175 ~v~~i~~MG~~~f~r~qv~~ALrAa-------fnNpdRAvEYL~~G 213 (308)
.|++.++|| |+|..|.++++-- |...+.-|.=|+.+
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 799999999 9999999999863 45555555555544
No 251
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=53.44 E-value=34 Score=27.32 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=42.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC------CeEEE---eCCE--ecCCCCChhhhccCCCCEEEEEEe
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLI---HQGK--VLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~------~qkLI---y~GK--iL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
.+...+.+.+..+.|+.+|+..+.++.+ +..+ .++|+ ++|. +|++++.--.-.+.-+..|++..+
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 17 PDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp TTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred ccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3455567888889999999999999988 4333 67764 6773 355544322223444567776543
No 252
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=52.83 E-value=19 Score=27.87 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC--CeEE--EeCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 21 DKVSDVKKNIETVQGSDVYPAS--QQML--IHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~~--~qkL--Iy~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
.+..+|+.|....++ ++.. ..+| ...|.+++|+.-+..+. ++++.+++.
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tLp---~nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCLP---SNTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSSC---SCCEEEEEC
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcCC---CCCEEEEEc
Confidence 379999999999998 6542 2444 45799998887655543 445555444
No 253
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=52.56 E-value=46 Score=25.04 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=42.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCEec-CCCCChhhh--ccCCCCEEEEEEec
Q 021760 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~g~~~ip~~~-qkLIy~GKiL-~D~~tL~dy--gIk~g~~I~v~v~k 76 (308)
.+-|..+.||.+|...|.++.+ +.+++ +-|+.+...+ ..+.+++++ ..+++++|+|.-+.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCK 86 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEES
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 3556788999999999999988 65554 4455566655 556777655 23467888887653
No 254
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=51.92 E-value=54 Score=26.24 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=41.5
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCEecCCCCChhhh--ccC-CCCEEEEEEec
Q 021760 16 EVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (308)
Q Consensus 16 eV~~~~TV~~LK~~I~~~~g~~~ip~~~-qkLIy~GKiL~D~~tL~dy--gIk-~g~~I~v~v~k 76 (308)
-|..+.||.+|...|.+... +.+++ +-|+.++....-+.+++++ .-+ ++.+|+|..+.
T Consensus 58 lVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 58 LVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 46778899999999999988 66665 4444566555667787766 223 56788887654
No 255
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=50.51 E-value=13 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhChhhHHHHHhc
Q 021760 284 QQFQALRTMVQANPQILQQWALI 306 (308)
Q Consensus 284 pqf~~lRq~vqqnP~~L~~~L~~ 306 (308)
.|=+|+-.++.+||+|+-.|+.+
T Consensus 17 ~qqqqvl~ILksnPqLMAAfIkQ 39 (47)
T 1zoq_C 17 QQQQQVLNILKSNPQLMAAFIKQ 39 (47)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHH
Confidence 45678888999999999998864
No 256
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.80 E-value=39 Score=23.78 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHh--cCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 169 GSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 169 g~~~e~~v~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
-++++.||+.+.+| - ++++.+..-|+-. +|.|.-+|=+|.|
T Consensus 10 ~~ql~~mv~~V~~mfP~---vp~~~I~~DL~~T-gsVe~TienILeG 52 (61)
T 2ekf_A 10 DVQLATLAQRVKEVLPH---VPLGVIQRDLAKT-GCVDLTITNLLEG 52 (61)
T ss_dssp CCCHHHHHHHHHHHCSS---SCHHHHHHHHHTS-CCHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 35689999999999 5 7999999999877 5999999999999
No 257
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=46.83 E-value=21 Score=30.07 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=37.7
Q ss_pred CcHHHHHHHH-HHhcCCccCH---HHHHHHHHHhcCC-hHHHHHHHHhC--CCCCC
Q 021760 170 SNLEATVQQI-LDMGGGSWDR---ETVIRALRAAYNN-PERAVEYLYSG--IPEQT 218 (308)
Q Consensus 170 ~~~e~~v~~i-~~MG~~~f~r---~qv~~ALrAafnN-pdRAvEYL~~G--IP~~~ 218 (308)
++.+..|+.| .|-| |.+ ++|+.||+..-.+ |..=.+||..| ||++.
T Consensus 61 s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~ 113 (168)
T 3cz6_A 61 SQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNV 113 (168)
T ss_dssp TCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTC
T ss_pred hhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCC
Confidence 4567888888 7789 865 6788899999999 99888999999 77653
No 258
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=46.82 E-value=55 Score=27.27 Aligned_cols=56 Identities=11% Similarity=0.174 Sum_probs=37.7
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCEecCCCCChhhhccCCCCEEEEE
Q 021760 14 EIEVKPEDKVSDVKKNIETVQGSDVYP---------ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~g~~~ip---------~~~qkLIy~GKiL~D~~tL~dygIk~g~~I~v~ 73 (308)
.++++. .||.+|.+.+...+.. +. .....+..||+.+.... -.++-|++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEE
Confidence 345655 8999999999876320 10 23456778998876532 234569999998886
No 259
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.52 E-value=52 Score=22.86 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=36.8
Q ss_pred CCcHHHHHHHHHHh--cCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 169 GSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 169 g~~~e~~v~~i~~M--G~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
-+.++.||+.+.+| - ++++++..-|+-.- |.|.-+|=+|.|
T Consensus 10 ~~q~~~mv~~V~~mfP~---vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 10 NSQLNAMAHQIQEMFPQ---VPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CCHHHHHHHHHHHHCCS---SCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCC---CCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 35689999999999 5 79999999998776 999999999998
No 260
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=44.90 E-value=43 Score=33.97 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=38.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy 48 (308)
|.+.|..++|....++|+...|+.+|-+.|..+.|. ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 457889999999999999999999999999999993 2345666665
No 261
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=44.76 E-value=48 Score=25.21 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=40.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEec-CCCCChhhh--ccCCCCEEEEEEec
Q 021760 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL-~D~~tL~dy--gIk~g~~I~v~v~k 76 (308)
.+-|..+.||.+|...|.++.+ +. .+-|+.+...+ ..+.+++++ ..+++++|+|..+.
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~---l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys~ 91 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLH---SD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYAC 91 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHT---CS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEES
T ss_pred EEEeCCCCcHHHHHHHHHHhcC---Cc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 3556778899999999999988 55 55554444244 567777766 33457788887654
No 262
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=43.53 E-value=19 Score=26.07 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=24.1
Q ss_pred hHHhhChHHHHHHHHHHHhChhhHHHHHh
Q 021760 277 LDFLRNSQQFQALRTMVQANPQILQQWAL 305 (308)
Q Consensus 277 l~~Lr~~pqf~~lRq~vqqnP~~L~~~L~ 305 (308)
+..+-++|+|+++=+-+++||..+..++.
T Consensus 22 i~~im~DP~~~~~lq~~~~NP~~~~k~~~ 50 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQAQQNPAALQEHMK 50 (71)
T ss_dssp HHHHHTCTHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHCHHHHHHHHh
Confidence 44566899999999999999999987764
No 263
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=43.18 E-value=62 Score=23.76 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
-+..+++|-|.- |+-|-.-...||+|+-+|-..||-+|..-
T Consensus 24 ~q~lLnQLrEIT-GiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREIT-GINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHS-CCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 355788899985 45577777789999999999999999743
No 264
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=42.42 E-value=24 Score=34.91 Aligned_cols=70 Identities=11% Similarity=0.235 Sum_probs=52.6
Q ss_pred EEEEEeCC--CcEEE----EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC----C--EecC-CCCChhhh--ccCC
Q 021760 2 KVFVKTLK--GTHFE----IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----G--KVLK-DVTTLEEN--KVAE 66 (308)
Q Consensus 2 ~I~Vktl~--gk~~~----leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~----G--KiL~-D~~tL~dy--gIk~ 66 (308)
-|++|..+ .+++. +-|+.+.+|.+|-..|.+..| +|++.--++|. + ..|+ .+.|+.+. .|.+
T Consensus 132 LlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~ 208 (530)
T 2ylm_A 132 MLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMD 208 (530)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCT
T ss_pred EEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccC
Confidence 36677553 33433 578889999999999999999 88886555553 3 3367 57899999 9999
Q ss_pred CCEEEEEE
Q 021760 67 NSFVVVML 74 (308)
Q Consensus 67 g~~I~v~v 74 (308)
|+.|++=.
T Consensus 209 GdII~fQ~ 216 (530)
T 2ylm_A 209 GDIIVFQK 216 (530)
T ss_dssp TEEEEEEE
T ss_pred CCEEEEEe
Confidence 99887754
No 265
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=39.27 E-value=1.1e+02 Score=27.73 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=46.1
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--e-C---CEecCCCCChhhh----ccCCCCEEEE
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H-Q---GKVLKDVTTLEEN----KVAENSFVVV 72 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y-~---GKiL~D~~tL~dy----gIk~g~~I~v 72 (308)
|.|-..+|....|+|++++|+.+|-+.+..+.++ ...+.--|+ | . -+.|+|...|-+. ....++.|++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~--~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC--GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC--CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC--CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 4444568889999999999999999988887763 222333332 2 1 2778888877664 3445555555
Q ss_pred E
Q 021760 73 M 73 (308)
Q Consensus 73 ~ 73 (308)
.
T Consensus 112 ~ 112 (281)
T 4gmv_A 112 M 112 (281)
T ss_dssp E
T ss_pred E
Confidence 4
No 266
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=38.74 E-value=63 Score=28.87 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=37.0
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe----C---CEecCCCCChhhh
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH----Q---GKVLKDVTTLEEN 62 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy----~---GKiL~D~~tL~dy 62 (308)
|+|-..+|....|.|++++|+.+|-+.+..+.+ +..+.-..++ . -+.|+|...+-+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 455566888999999999999999998887655 3222222222 1 2778888776544
No 267
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=38.12 E-value=18 Score=31.71 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhc
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAY 200 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAaf 200 (308)
.++.+.-|+.+| |.+.++.+|++...
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 189 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTVL 189 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 578999999999 99999999998873
No 268
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=36.90 E-value=73 Score=24.10 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=34.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeE-EEeCCEe
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKV 52 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qk-LIy~GKi 52 (308)
...+.+.|+...+=.++|+.|+..++ +.+.... |++.||.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCce
Confidence 35899999999999999999999999 7787774 5677764
No 269
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=36.05 E-value=17 Score=24.89 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=23.2
Q ss_pred cCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 187 WDRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 187 f~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
|+|+-+.+||+.. +|-.+|.+.| ||.
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L--GIs 46 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL--GVS 46 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT--TSC
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh--CCC
Confidence 7899999999999 9999999987 664
No 270
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.89 E-value=77 Score=22.29 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=32.5
Q ss_pred HH-HHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 172 LE-ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 172 ~e-~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
.+ +.|.+.+++ | =++++.+.-|.++-+|-++||...+.
T Consensus 16 ~~q~~i~qF~~iTg---~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 16 RHQVMINQFVLAAG---CAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 44 789998887 6 68999999999999999999987764
No 271
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.74 E-value=76 Score=22.35 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhC
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~G 213 (308)
.+.++.|++.+++-| .=+.+.++.-|..+-+|.++||...+.+
T Consensus 16 ~~~~e~i~qF~~ITg-~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTG-IESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 456788999999852 2378899999999999999999877765
No 272
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=35.47 E-value=51 Score=33.87 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=39.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCE--ec------CCCCChhhhccCCCCEEEEE
Q 021760 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS--------QQMLIHQGK--VL------KDVTTLEENKVAENSFVVVM 73 (308)
Q Consensus 13 ~~leV~~~~TV~~LK~~I~~~~g~~~ip~~--------~qkLIy~GK--iL------~D~~tL~dygIk~g~~I~v~ 73 (308)
..++++.+.|+.+|-+.|+.+.... +..- ..+++|... .| .-+++|.++||++|+.|.|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4577887889999988888753310 2111 235666532 11 22578999999999998875
No 273
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=35.29 E-value=21 Score=30.90 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHh
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAA 199 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAa 199 (308)
.++++.-|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 578999999999 9999999999986
No 274
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=34.51 E-value=75 Score=24.62 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=35.5
Q ss_pred EEEEe-CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEe
Q 021760 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV 52 (308)
Q Consensus 3 I~Vkt-l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKi 52 (308)
|.||. ..|.++.|.|....+..+|..++...+| ..+-|.|....
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG------q~ldL~y~n~E 53 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTNNE 53 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS------SCEEEEECSSS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC------CeeeEEEecce
Confidence 45554 4688999999999999999999999999 36677776544
No 275
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=33.82 E-value=29 Score=32.35 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHH----HHHH-HhCCC
Q 021760 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA----VEYL-YSGIP 215 (308)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRA----vEYL-~~GIP 215 (308)
.++|..|..+.+|| |+++||.++|..-..=-.+- |.|| .-|++
T Consensus 44 ~~~e~~l~~L~d~G---fs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls 91 (335)
T 4fp9_B 44 LELERVMSSLLDMG---FSNAHINELLSVRRGASLQQLLDIISEFILLGLN 91 (335)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHCC---CCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCC
Confidence 46899999999999 99999999998755433222 3343 44765
No 276
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=31.78 E-value=49 Score=26.04 Aligned_cols=41 Identities=32% Similarity=0.453 Sum_probs=34.9
Q ss_pred cccccCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 021760 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (308)
Q Consensus 164 s~l~~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GIP~ 216 (308)
+.|+-|..-++-..-|+++. .---+.|+.||| +||..|++.
T Consensus 23 ~~LipG~vsee~F~LLlelS--~IrSekII~ALr----------dyLV~G~sr 63 (111)
T 3m8j_A 23 SALSSGSMSEEQFFLLIGIS--SIHSDRVILAMK----------DYLVSGHSR 63 (111)
T ss_dssp HCCCTTCSCHHHHHHHHHHS--CCCCHHHHHHHH----------HHHTTCCCH
T ss_pred CccCCCCCCHHHHHHHHHHC--CCCCHHHHHHHH----------HHHHcCCcH
Confidence 45788999999999999995 157789999999 899999884
No 277
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=31.67 E-value=29 Score=25.55 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=23.7
Q ss_pred cCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 187 WDRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 187 f~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
|+|+-+++||+.+-+|-.+|.+.| ||.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L--GIS 67 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL--NMH 67 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 788999999999999999999987 553
No 278
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=30.45 E-value=1.2e+02 Score=20.81 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHh-cCCccCHHHHHHHHHHhcCChHHHHHHHH----hC-CCCC
Q 021760 171 NLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY----SG-IPEQ 217 (308)
Q Consensus 171 ~~e~~v~~i~~M-G~~~f~r~qv~~ALrAafnNpdRAvEYL~----~G-IP~~ 217 (308)
+-+++|..+... | -..+=+..+|.-.-.|-+||+.-.. .| ||++
T Consensus 6 ~q~~mv~~~s~~Tg---mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 6 EQQEMLQAFSTQSG---MNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 457888888776 7 7888899999999999999996532 24 9864
No 279
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=29.94 E-value=39 Score=28.25 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~ 29 (308)
+|+|+ ++|+.+.+++++..|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 56666 6899999999999999986554
No 280
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=29.75 E-value=56 Score=24.66 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHH
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKK 28 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~ 28 (308)
+|+|.+.+|+.+.|++....||.+.-.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 789999999999999999999988554
No 281
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=29.58 E-value=1.7e+02 Score=21.71 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=50.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC-CEecCCCCChhhhccCCCCEEEEEEecC
Q 021760 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GKVLKDVTTLEENKVAENSFVVVMLTKS 77 (308)
Q Consensus 14 ~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~-GKiL~D~~tL~dygIk~g~~I~v~v~k~ 77 (308)
.|.|........+-+-.+++++ +++..--+|.+ |--++..++-...-+|.|+.|.++-|-+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~---vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFK---VPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT---CCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred EEecCccCchHHHHHHHHHHcC---CCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 4677777778888888889988 88888777764 5557889999999999999999987765
No 282
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=29.39 E-value=39 Score=28.13 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHH
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKK 28 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~ 28 (308)
|.|+|+ ++|+.+.+++++..|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 356666 789999999999999988654
No 283
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=29.21 E-value=29 Score=28.62 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC--CeEEE--eCCEecCCCCChhhhccCCCCEEEEEEe
Q 021760 21 DKVSDVKKNIETVQGSDVYPAS--QQMLI--HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~~--~qkLI--y~GKiL~D~~tL~dygIk~g~~I~v~v~ 75 (308)
.+..+|+.|....++ ++.. ..+|+ ..|.+++|+.-+..+ .+ +++.+++.
T Consensus 82 ~SL~EL~~K~~~kL~---l~~~~~~~~LvLeeDGTeVddEeYF~tL--p~-nT~LmvL~ 134 (145)
T 1ibx_B 82 SCLEDLRSKACDILA---IDKSLTPVTLVLAEDGTIVDDDDYFLCL--PS-NTKFVALA 134 (145)
T ss_dssp SSHHHHHHHHHHHHT---CSCTTSCCEEEETTTCCBCSSHHHHHHS--CS-SCBEEEEC
T ss_pred CCHHHHHHHHHHHhc---CCCCccccEEEEeeCCcEEechhHhhcC--CC-CCEEEEEC
Confidence 479999999999998 6543 44543 579888887665553 34 44444443
No 284
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=28.53 E-value=1.4e+02 Score=20.14 Aligned_cols=37 Identities=30% Similarity=0.308 Sum_probs=31.6
Q ss_pred HHHHHHHHH--hcCCccCHHHHHHHHHHhcCChHHHHHHHHh
Q 021760 173 EATVQQILD--MGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (308)
Q Consensus 173 e~~v~~i~~--MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~ 212 (308)
|..|.+... -| -.|+-++|-|+-..-|.+-||.-||+
T Consensus 10 e~li~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T 2qho_B 10 EELISQAQVVLQG---KSRSVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHHSTT---CCHHHHHHHHHHTTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHhCccHHHHHHHHhc
Confidence 566766444 48 89999999999999999999999986
No 285
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=28.24 E-value=94 Score=20.31 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHh-cCCccC-HHHHHHHHHHhcCChHHHHH
Q 021760 171 NLEATVQQILDM-GGGSWD-RETVIRALRAAYNNPERAVE 208 (308)
Q Consensus 171 ~~e~~v~~i~~M-G~~~f~-r~qv~~ALrAafnNpdRAvE 208 (308)
+.++.|.+.+++ | -+ -++++.=|.++-.|-+.||.
T Consensus 4 d~de~ia~F~~iTG---~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 4 DREMILADFQACTG---IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CHHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred cHHHHHHHHHHHHC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 568899999998 6 65 48899999999999988873
No 286
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=28.07 E-value=1e+02 Score=24.39 Aligned_cols=54 Identities=2% Similarity=0.011 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---Ee--cC-CCCChhhhccCCCCEEEEEEec
Q 021760 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV--LK-DVTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G---Ki--L~-D~~tL~dygIk~g~~I~v~v~k 76 (308)
.+...|+.+|...+.. +......|.|.. -. +. |+.....+.....+.+.|.+..
T Consensus 57 ~s~~~L~~kV~~lFp~--L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~~~~lRlyVke 116 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 116 (117)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEe
Confidence 4899999999999741 445567887854 22 22 2222223333335577776653
No 287
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=28.06 E-value=28 Score=27.42 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=47.4
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC--CeEEEeC--C-EecCCCCChhhhccCCCCEEEEEE
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS--QQMLIHQ--G-KVLKDVTTLEENKVAENSFVVVML 74 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~--~qkLIy~--G-KiL~D~~tL~dygIk~g~~I~v~v 74 (308)
|+|..++ ..+++.|..+.-|+-|.-+|-++.. +..+ +--|-.- . -.|+-..||..|||.-+..+++.-
T Consensus 29 V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~---i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 29 VHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLD---VKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp CCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCC---SCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEecCC-ccEEEEEeeccccccchhhhhhhhc---ccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 4444333 6778889888999999999987765 3322 3333332 2 346888999999999998887753
No 288
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=28.06 E-value=85 Score=29.67 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=37.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHH--HHhCCCCCCCCCeEE--Ee--CC--EecCCCCChhhh
Q 021760 8 LKGTHFEIEVKPEDKVSDVKKNIE--TVQGSDVYPASQQML--IH--QG--KVLKDVTTLEEN 62 (308)
Q Consensus 8 l~gk~~~leV~~~~TV~~LK~~I~--~~~g~~~ip~~~qkL--Iy--~G--KiL~D~~tL~dy 62 (308)
++|....|.++.+.||++|-..|. .+.|.+....+..-| .+ .| ..|+++++|.+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 677777899999999999999998 466621012233434 33 23 568899988875
No 289
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=28.04 E-value=28 Score=27.40 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=12.3
Q ss_pred HHHHHHHhChhhHHHHHhc
Q 021760 288 ALRTMVQANPQILQQWALI 306 (308)
Q Consensus 288 ~lRq~vqqnP~~L~~~L~~ 306 (308)
+.|+++.|||||--.|+|.
T Consensus 71 ~a~~LL~q~PQLAyAl~Qa 89 (109)
T 2l9b_A 71 DAASLLELCPQLSFVTAEL 89 (109)
T ss_dssp HHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHCchHHHHHHHH
Confidence 5667777777766666553
No 290
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=27.99 E-value=1.2e+02 Score=22.89 Aligned_cols=45 Identities=27% Similarity=0.206 Sum_probs=35.4
Q ss_pred EEEEe-CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEec
Q 021760 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL 53 (308)
Q Consensus 3 I~Vkt-l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL 53 (308)
|.||. ..|.++.|.+..-....+|..++...+| ..+-|.|-...|
T Consensus 5 vRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afG------q~ldl~y~nnEL 50 (94)
T 2jrh_A 5 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG------QPLDLHYMNNEL 50 (94)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHC------SSEEEEEECSSC
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhC------CeeeeEEeccee
Confidence 34443 4788999999999999999999999999 466777765443
No 291
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=27.95 E-value=44 Score=27.77 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~ 29 (308)
|.|+|+ ++|+.+.+++++..||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456666 6899999999999999886654
No 292
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=27.81 E-value=1e+02 Score=23.23 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeE-EEeCCEe
Q 021760 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKV 52 (308)
Q Consensus 10 gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qk-LIy~GKi 52 (308)
...+.+.|+...+=.++|+.|+..++ +.+.... |++.||.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~---VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFK---VKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTT---CCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CceeeeeeeeeCCce
Confidence 36899999999999999999999999 7777664 4677754
No 293
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=27.40 E-value=30 Score=27.52 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCCCC
Q 021760 192 VIRALRAAYNNPERAVEYLYSG-IPEQTAV 220 (308)
Q Consensus 192 v~~ALrAafnNpdRAvEYL~~G-IP~~~~~ 220 (308)
+..+||.|| |||++||-+| ||.+-..
T Consensus 78 ~d~slK~a~---d~A~~fl~~~~lP~~W~~ 104 (117)
T 2yrv_A 78 SELSTKPGL---QKASIFLKTRVVPDNWKM 104 (117)
T ss_dssp HHHHHCHHH---HHHHHHHHTCCCCTTTCC
T ss_pred CchhHHHHH---HHHHHHHhcCCCCCcccc
Confidence 346777776 8999999999 8987654
No 294
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=27.38 E-value=30 Score=24.63 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 021760 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (308)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GI 214 (308)
-+.|.+.+.-|.||| +=+|-.|-.--.+.|-|..||
T Consensus 10 ~~kY~~LL~VIeEmg----------kdIrpTYaGsk~~~ERLkR~I 45 (65)
T 2kw6_A 10 HSKYAELLAIIEELG----------KEIRPTYAGSKSAMERLKRGI 45 (65)
T ss_dssp SCHHHHHHHHHHHHT----------TTHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh----------cccchhhccCcchHHHHHHHH
Confidence 468999999999999 668888888888899998886
No 295
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=26.88 E-value=1.3e+02 Score=23.07 Aligned_cols=54 Identities=0% Similarity=-0.009 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---Ee--cCC-CCChhhhccCCCCEEEEEEec
Q 021760 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV--LKD-VTTLEENKVAENSFVVVMLTK 76 (308)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G---Ki--L~D-~~tL~dygIk~g~~I~v~v~k 76 (308)
.+...|+.+|...+.. +......|.|.. -. +.+ +.....+.....+.|.|.+..
T Consensus 42 ~s~~~L~~~V~~lFp~--l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred ccHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEc
Confidence 4899999999999641 444567787854 21 222 222223333345677777653
No 296
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=26.66 E-value=50 Score=24.13 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=28.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC-----CCCeEEEeCC
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP-----ASQQMLIHQG 50 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip-----~~~qkLIy~G 50 (308)
.+.|.|.++.+..+|..+|..+.+ .. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 578899999999999999999988 43 2456666654
No 297
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=26.36 E-value=50 Score=27.52 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=21.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 021760 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (308)
Q Consensus 2 ~I~Vktl~gk~~~leV~~~~TV~~LK~~ 29 (308)
.|+|. ++|+.+.+++++..|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45665 6899999999999999886554
No 298
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=25.87 E-value=91 Score=24.32 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=42.2
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-------CCCeEEEe---CCEe--cCC-CCChhhhccCCCCEEE
Q 021760 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-------ASQQMLIH---QGKV--LKD-VTTLEENKVAENSFVV 71 (308)
Q Consensus 5 Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip-------~~~qkLIy---~GKi--L~D-~~tL~dygIk~g~~I~ 71 (308)
+-..+|-.+.+++..+.|+.+||+.+.++-++ +| ++.-.+.. .|.+ |.| ++-|.++... -..+.
T Consensus 24 ~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~--~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piLk 100 (108)
T 2v1y_A 24 CLLPNGMIVTLECLREATLITIKHELFKEARK--YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFLK 100 (108)
T ss_dssp EECTTSCEEEEEEETTCBHHHHHHHHHHHGGG--STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEEE
T ss_pred EEcCcEEEEEEEeeccccHHHHHHHHHHHHHh--CchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEEE
Confidence 33457888899999999999999999877431 21 12222221 2444 655 4788888776 34454
Q ss_pred EEE
Q 021760 72 VML 74 (308)
Q Consensus 72 v~v 74 (308)
|+-
T Consensus 101 lve 103 (108)
T 2v1y_A 101 VIE 103 (108)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
No 299
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=24.43 E-value=1.4e+02 Score=25.84 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=27.8
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhC
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQG 35 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g 35 (308)
|.|-..+|....|.|+++.|+.+|-+.|..+.+
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~ 69 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTH 69 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHC
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhC
Confidence 344455778888999999999999999999988
No 300
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=24.40 E-value=77 Score=27.72 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=39.0
Q ss_pred cCCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHH
Q 021760 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (308)
Q Consensus 168 ~g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~ 211 (308)
.|..+++.+..|.+.| ..+++++..||+++.---..|+++|+
T Consensus 162 ig~ar~qLl~aL~~l~--ll~~~~~~~a~~~~~~~~~~~~~~~~ 203 (214)
T 3kvh_A 162 VSTAKCQLLFALKVLN--MMPEEKLVEALAAATEKQKKALEKLL 203 (214)
T ss_dssp CTTHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcC--CCCHHHHHHHHHhccCcchhHHHhhC
Confidence 4889999999999999 55999999999999999999999995
No 301
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=24.32 E-value=26 Score=25.07 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=21.0
Q ss_pred hhChHHHHHHHHHHHhChhhHHH-HHh
Q 021760 280 LRNSQQFQALRTMVQANPQILQQ-WAL 305 (308)
Q Consensus 280 Lr~~pqf~~lRq~vqqnP~~L~~-~L~ 305 (308)
+-..|+|.++=+-|++||+.+.. .++
T Consensus 28 ~~~DP~~~~~lq~i~~NP~~i~~~~~~ 54 (71)
T 2llv_A 28 MMKDPQLVAKLIGYKQNPQAIGQDLFT 54 (71)
T ss_dssp HHHSCTHHHHHHHHHHSCTTHHHHTTT
T ss_pred HhcCHHHHHHHHHHHHCHHHHHHHHhh
Confidence 34677899999999999999987 553
No 302
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=23.13 E-value=17 Score=31.13 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHhc
Q 021760 172 LEATVQQILDMGGGSWDRETVIRALRAAY 200 (308)
Q Consensus 172 ~e~~v~~i~~MG~~~f~r~qv~~ALrAaf 200 (308)
.++++.-|+.+| |.+.++.+|++...
T Consensus 146 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 171 (191)
T 1ixr_A 146 AEEAVMALAALG---FKEAQARAVVLDLL 171 (191)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 467899999999 99999999998764
No 303
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=23.05 E-value=85 Score=23.81 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=31.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCCE
Q 021760 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQGK 51 (308)
Q Consensus 12 ~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkL-Iy~GK 51 (308)
.+.+.|+...|=.++|+.|+..++ +.+....- ++.||
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~---VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFG---VRVIGISTMNVPGK 61 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHC---CCCSEEEECCBCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhC---CCceEEEeEEeCCc
Confidence 389999999999999999999999 77877754 56765
No 304
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=22.65 E-value=51 Score=24.97 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 021760 187 WDRETVIRALRAAYNNPERAVEYLYSGIP 215 (308)
Q Consensus 187 f~r~qv~~ALrAafnNpdRAvEYL~~GIP 215 (308)
|+|+-+++||+.+-+|-.+|.+.| ||.
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L--GIs 84 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM--GIN 84 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 789999999999999999999988 554
No 305
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=22.40 E-value=1.3e+02 Score=23.42 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHhcCCccCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 021760 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (308)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f~r~qv~~ALrAafnNpdRAvEYL~~GI 214 (308)
|...+....-|.+.. -+=-.|..||--.-.+..+|-.||++|+
T Consensus 11 g~~~~~i~~lMeef~---~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 11 GAAIKIIRQLMEKFN---LDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHh---hhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 333333333344567 7999999999999999999999999985
No 306
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=21.88 E-value=53 Score=30.64 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCccCHHHHHHHHH
Q 021760 174 ATVQQILDMGGGSWDRETVIRALR 197 (308)
Q Consensus 174 ~~v~~i~~MG~~~f~r~qv~~ALr 197 (308)
..|+.-++|| |++..|+++|+
T Consensus 121 ~~v~~~l~mG---f~~~~v~~~~~ 141 (345)
T 3t6p_A 121 PVVKSALEMG---FNRDLVKQTVQ 141 (345)
T ss_dssp HHHHHHHHTT---CCHHHHHHHHH
T ss_pred HHHHHHHHhc---ccHHHHHHHHH
Confidence 6789999999 99999999887
No 307
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=21.80 E-value=1.7e+02 Score=22.74 Aligned_cols=44 Identities=25% Similarity=0.180 Sum_probs=33.9
Q ss_pred EEEEe-CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEe
Q 021760 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV 52 (308)
Q Consensus 3 I~Vkt-l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKi 52 (308)
|.||. ..|.++.|.+..-....+|..++...+| ..+-|.|-...
T Consensus 32 vRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afG------q~ldl~y~nnE 76 (111)
T 2c60_A 32 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG------QPLDLHYMNNE 76 (111)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHS------SCCEEEEECSS
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhC------CeeeeEEecce
Confidence 34443 4688899999999999999999999999 35567665443
No 308
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=21.68 E-value=2e+02 Score=19.78 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=38.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCEecCCCCCh
Q 021760 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~GKiL~D~~tL 59 (308)
|-|.|| +..+.+.+++.......+|...+... | -...|-..|++|.....|
T Consensus 1 mlvivr-lqdq~lpfelpaga~asqls~lls~~-g------m~fslhtqgrvlseaael 51 (69)
T 2jx5_A 1 MLVIVR-LQDQTLPFELPAGARASQLSNLLSSS-G------MAFSLHTQGRVLSEAAEL 51 (69)
T ss_dssp CEEEEE-ETTEEEEEECCTTCCHHHHHHHHHHS-S------CCCEEEETTEECCTTCCC
T ss_pred CeEEEE-eccccccccccccccHHHHHHHHhhc-C------ceEEEeecchhhhhHHhh
Confidence 667788 66778999999888888888877654 4 246777899999765443
No 309
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=21.50 E-value=1.1e+02 Score=22.98 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=25.4
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQ 34 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I~~~~ 34 (308)
+.|...+|-+|.++|..+.-+..-|+.|+...
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~ermk 70 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERMK 70 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHH
Confidence 44555689999999999988888888877653
No 310
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.43 E-value=1e+02 Score=23.53 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=37.9
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCC--EecCCCCC----hhhhccCCCCEEEEEEecCC
Q 021760 16 EVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQG--KVLKDVTT----LEENKVAENSFVVVMLTKSK 78 (308)
Q Consensus 16 eV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLI--y~G--KiL~D~~t----L~dygIk~g~~I~v~v~k~k 78 (308)
-|.+..|..||-..+.+..| - ..+..|+ +.| +.|.++.. |..+|- ..+.|.+++++..
T Consensus 23 GvT~~TTC~DVV~aL~~~~G---~-~~~y~LvE~wRg~ER~L~~~~r~l~~l~~wG~-~~~eV~F~Lr~~~ 88 (95)
T 2cs4_A 23 GVTEVTTCQEVVIALAQAIG---R-TGRYTLIEKWRDTERHLAPHENPIISLNKWGQ-YASDVQLILRRTG 88 (95)
T ss_dssp SBCSSSCHHHHHHHHHHHHS---C-CSEEEEEEEETTEEEECCSSSCHHHHHHTTGG-GSTTCEEEEEEEE
T ss_pred CCCCCCcHHHHHHHHHhccC---C-CccEEEEEecCCCeecCCCcccHHHHHHHhCc-CCCceEEEEEECC
Confidence 68899999999998888888 2 3556664 677 55765543 455563 3344555555443
No 311
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=21.30 E-value=2.4e+02 Score=21.58 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=33.2
Q ss_pred EEEEe-CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 021760 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (308)
Q Consensus 3 I~Vkt-l~gk~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G 50 (308)
|.||. ..|.++.|++..-....+|..++...+| ..+-|.|-.
T Consensus 21 vRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afG------q~ldl~y~n 63 (100)
T 2npt_B 21 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTN 63 (100)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHT------SCEEEEEEE
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhC------CeeeeEEec
Confidence 34443 4788999999999999999999999999 456666654
No 312
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=21.23 E-value=48 Score=26.02 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.1
Q ss_pred HHHHHHHHHhChhhHHHHHhcCC
Q 021760 286 FQALRTMVQANPQILQQWALIVP 308 (308)
Q Consensus 286 f~~lRq~vqqnP~~L~~~L~~~~ 308 (308)
+.||++++..||+..-.||.+-|
T Consensus 58 L~qmK~~~~~nP~~a~~LL~q~P 80 (109)
T 2l9b_A 58 LQKFQEWTRAHPEDAASLLELCP 80 (109)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCHHHHHHHHHHCc
Confidence 67999999999999999997643
No 313
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=21.04 E-value=60 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=21.5
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHH
Q 021760 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNI 30 (308)
Q Consensus 3 I~Vktl~gk~~~leV~~~~TV~~LK~~I 30 (308)
|+|+ ++|+.+.+++++..||.++-..+
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 4444 69999999999999998876543
No 314
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=20.97 E-value=40 Score=27.90 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=23.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCC---cHHHHHHHH
Q 021760 1 MKVFVKTLKGTHFEIEVKPED---KVSDVKKNI 30 (308)
Q Consensus 1 M~I~Vktl~gk~~~leV~~~~---TV~~LK~~I 30 (308)
|+|.|+ .++++|..++..+. |+++|.+++
T Consensus 30 ~~I~i~-~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 30 MRLRIR-FESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCEEEE-ETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred eEEEEE-ECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 677777 56788999999998 999988753
No 315
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=20.97 E-value=42 Score=23.27 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=8.3
Q ss_pred HHHHHHHHhChhhHHHHH
Q 021760 287 QALRTMVQANPQILQQWA 304 (308)
Q Consensus 287 ~~lRq~vqqnP~~L~~~L 304 (308)
+++-.++.+||+|+-.|+
T Consensus 27 qqvl~ILksNPqLMAAfI 44 (59)
T 1kbh_B 27 QQVLNILKSNPQLMAAFI 44 (59)
T ss_dssp THHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHH
Confidence 344444445555544443
No 316
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=20.13 E-value=2.4e+02 Score=21.01 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=31.2
Q ss_pred EEEEeCCCc---EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 021760 3 VFVKTLKGT---HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (308)
Q Consensus 3 I~Vktl~gk---~~~leV~~~~TV~~LK~~I~~~~g~~~ip~~~qkLIy~G 50 (308)
|.||..-+. .|.++=+...+-.+|+.+|+..+. ++.....|.|..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~---L~~~~f~i~Y~D 54 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ---IPGLDVLLGYTD 54 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT---CTTCCCEEEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC---CCCCCEEEEEEC
Confidence 556654333 344543455799999999999988 766677887843
Done!