BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021762
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
pdb|2PO7|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
Length = 359
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 10/205 (4%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDQDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVSFIVVAYTFCM 298
KEL F +K EV + A++ M
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPM 203
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 114/213 (53%), Gaps = 9/213 (4%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKFQKPEEVSFIVVAYTFCMVPLQKFGMSD 308
KEL F E+ S +V+ ++ C +P+ D
Sbjct: 179 KELDHFPL-EKRSEVVILFSACSLPMSVVNRGD 210
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase
pdb|4F4D|B Chain B, F337r Variant Of Human Ferrochelatase
Length = 359
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 10/205 (4%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVSFIVVAYTFCM 298
KEL F +K EV + A++ M
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPM 203
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|B Chain B, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|C Chain C, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|D Chain D, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2QD1|A Chain A, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|B Chain B, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|C Chain C, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|D Chain D, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
Length = 359
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 10/205 (4%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVSFIVVAYTFCM 298
KEL F +K EV + A++ M
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPM 203
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD3|B Chain B, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD4|A Chain A, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD4|B Chain B, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD5|A Chain A, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|2QD5|B Chain B, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|3HCN|A Chain A, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCN|B Chain B, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCO|A Chain A, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCO|B Chain B, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCR|A Chain A, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
pdb|3HCR|B Chain B, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
Length = 359
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 10/205 (4%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVSFIVVAYTFCM 298
KEL F +K EV + A++ M
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPM 203
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|2QD2|B Chain B, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|3HCP|A Chain A, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
pdb|3HCP|B Chain B, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
Length = 359
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 10/205 (4%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPAIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVSFIVVAYTFCM 298
KEL F +K EV + A++ M
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPM 203
>pdb|1L8X|A Chain A, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1L8X|B Chain B, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1LBQ|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
pdb|1LBQ|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
Length = 362
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 8/204 (3%)
Query: 100 VGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGY 159
G++L+N+GGP + + FL+ LFAD D+I + + Q +AK I+ R PK ++ Y
Sbjct: 8 TGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKY---QKTIAKYIAKFRTPKIEKQY 64
Query: 160 AAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
IGGGSP+RK ++ QA + L+ + P YV RY P T E +Q+ +D +
Sbjct: 65 REIGGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVK 124
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
+ V YP FS STTGSSI L + + S+I W EG + + ++ I K
Sbjct: 125 KAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSVIDRWPTNEGLIKAFSENITK 184
Query: 277 ELGKFQKP--EEVSFIVVAYTFCM 298
+L +F +P ++V + A++ M
Sbjct: 185 KLQEFPQPVRDKVVLLFSAHSLPM 208
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 10/205 (4%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADAIL 178
Query: 276 KELGKF--QKPEEVSFIVVAYTFCM 298
KEL F +K EV + A++ M
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPM 203
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
pdb|2PNJ|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
Length = 359
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 10/205 (4%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVSFIVVAYTFCM 298
KEL F +K EV + A++ M
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPM 203
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 10/205 (4%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVSFIVVAYTFCM 298
KEL F +K EV + A++ M
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPM 203
>pdb|3GOQ|A Chain A, Crystal Structure Of The Tyr13met Variant Of Bacillus
Subtilis Ferrochelatase
Length = 310
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 24/210 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ +G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAMGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 107 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 163
Query: 277 ELGKFQKPE-EVSFIVVAYTFCMVPLQKFG 305
+ E E + ++V+ +++FG
Sbjct: 164 TYASMPEDERENAMLIVSAHSLPEKIKEFG 193
>pdb|2AC4|A Chain A, Crystal Structure Of The His183cys Mutant Variant Of
Bacillus Subtilis Ferrochelatase
pdb|2Q2O|A Chain A, Crystal Structure Of H183c Bacillus Subtilis
Ferrochelatase In Complex With Deuteroporphyrin Ix
2,4-Disulfonic Acid Dihydrochloride
Length = 309
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 26/211 (12%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 106 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 162
Query: 277 ELGKFQKPEEVSFIVVAYTFCMVP--LQKFG 305
+ E + +++ + C +P +++FG
Sbjct: 163 TYASMPEDERENAMLIV-SACSLPEKIKEFG 192
>pdb|2AC2|A Chain A, Crystal Structure Of The Tyr13phe Mutant Variant Of
Bacillus Subtilis Ferrochelatase With Zn(2+) Bound At
The Active Site
Length = 309
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAFGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 106 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 162
Query: 277 ELGKFQKPE-EVSFIVVAYTFCMVPLQKFG 305
+ E E + ++V+ +++FG
Sbjct: 163 TYASMPEDERENAMLIVSAHSLPEKIKEFG 192
>pdb|2Q3J|A Chain A, Crystal Structure Of The His183ala Variant Of Bacillus
Subtilis Ferrochelatase In Complex With N-Methyl
Mesoporphyrin
Length = 309
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 106 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 162
Query: 277 ELGKFQKPE-EVSFIVVAYTFCMVPLQKFG 305
+ E E + ++V+ +++FG
Sbjct: 163 TYASMPEDERENAMLIVSAASLPEKIKEFG 192
>pdb|2H1W|A Chain A, Crystal Structure Of The His183ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 107 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 163
Query: 277 ELGKFQKPE-EVSFIVVAYTFCMVPLQKFG 305
+ E E + ++V+ +++FG
Sbjct: 164 TYASMPEDERENAMLIVSAASLPEKIKEFG 193
>pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With N-Methyl Mesoporphyrin
pdb|1LD3|A Chain A, Crystal Structure Of B. Subilis Ferrochelatase With Zn(2+)
Bound At The Active Site.
pdb|1N0I|A Chain A, Crystal Structure Of Ferrochelatase With Cadmium Bound At
Active Site
pdb|2HK6|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With Iron
Bound At The Active Site
pdb|1AK1|A Chain A, Ferrochelatase From Bacillus Subtilis
Length = 310
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 107 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 163
Query: 277 ELGKFQKPE-EVSFIVVAYTFCMVPLQKFG 305
+ E E + ++V+ +++FG
Sbjct: 164 TYASMPEDERENAMLIVSAHSLPEKIKEFG 193
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
pdb|2Q2N|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With Deuteroporphyrin Ix 2,4-Disulfonic Acid
Dihydrochloride
pdb|3M4Z|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With
Cobalt Bound At The Active Site
Length = 309
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 106 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 162
Query: 277 ELGKFQKPE-EVSFIVVAYTFCMVPLQKFG 305
+ E E + ++V+ +++FG
Sbjct: 163 TYASMPEDERENAMLIVSAHSLPEKIKEFG 192
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N-
Methylmesoporphyrin Complex Bound At The Active Site
Length = 306
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 1 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 42
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 43 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 102
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 103 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 159
Query: 277 ELGKFQKPE-EVSFIVVAYTFCMVPLQKFG 305
+ E E + ++V+ +++FG
Sbjct: 160 TYASMPEDERENAMLIVSAHSLPEKIKEFG 189
>pdb|2H1V|A Chain A, Crystal Structure Of The Lys87ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+ + PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLAHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 107 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 163
Query: 277 ELGKFQKPE-EVSFIVVAYTFCMVPLQKFG 305
+ E E + ++V+ +++FG
Sbjct: 164 TYASMPEDERENAMLIVSAHSLPEKIKEFG 193
>pdb|2C8J|A Chain A, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
pdb|2C8J|B Chain B, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
Length = 311
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 23/179 (12%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + E
Sbjct: 4 KIGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPSPEMLEDL-----TER 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL IT EQA+ L+ L + ++Y+G+++ PF E+AV+++ D I
Sbjct: 46 YRAIGGISPLATITLEQAKKLEKRLNEVQDEVEYHMYLGLKHIEPFIEDAVKEMHNDGIQ 105
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
+ L L P +S + S + Q E L L + I SWY+ ++ D ++
Sbjct: 106 DAIALVLAPHYSTFSVKSYVGRAQ---EEAEKLGNLTIHGIDSWYKEPKFIQYWVDAVK 161
>pdb|2XKB|A Chain A, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|B Chain B, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|C Chain C, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|D Chain D, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|E Chain E, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|F Chain F, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|G Chain G, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|H Chain H, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|I Chain I, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|J Chain J, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|K Chain K, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|L Chain L, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
Length = 427
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 224 YPQFSISTTGSSIRVLQNIFREDAY-------LSRLPVSIIRSWYQREG--YVNSMADLI 274
YP +++ S + LQNI +ED +R P S++ + E N D +
Sbjct: 53 YPTLAVNFAESDMMHLQNIIKEDRIHFDGLKGAARTP-SVVTDLFDPETNPNANGYLDKL 111
Query: 275 QKELGKFQKPEEVSFIVVAYTFCM 298
+ELG+ EE IV + C+
Sbjct: 112 AQELGRKFTNEEGEVIVDQFLICL 135
>pdb|2XKA|A Chain A, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|B Chain B, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|C Chain C, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|D Chain D, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|E Chain E, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|F Chain F, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|G Chain G, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
Length = 421
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 224 YPQFSISTTGSSIRVLQNIFREDAY-------LSRLPVSIIRSWYQREG--YVNSMADLI 274
YP +++ S + LQNI +ED +R P S++ + E N D +
Sbjct: 53 YPTLAVNFAESDMMHLQNIIKEDRIHFDGLKGAARTP-SVVTDLFDPETNPNANGYLDKL 111
Query: 275 QKELGKFQKPEEVSFIVVAYTFCM 298
+ELG+ EE IV + C+
Sbjct: 112 AQELGRKFTNEEGEVIVDQFLICL 135
>pdb|3M89|A Chain A, Structure Of Tubz-Gtp-G-S
Length = 427
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 224 YPQFSISTTGSSIRVLQNIFREDAY-------LSRLPVSIIRSWYQREG--YVNSMADLI 274
YP +++ S LQNI +ED +R P S++ + E N D +
Sbjct: 73 YPTLAVNFAESDXXHLQNIIKEDRIHFDGLKGAARTP-SVVTDLFDPETNPNANGYLDKL 131
Query: 275 QKELGKFQKPEEVSFIVVAYTFCM 298
+ELG+ EE IV + C+
Sbjct: 132 AQELGRKFTNEEGEVIVDQFLICL 155
>pdb|2WYO|A Chain A, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|B Chain B, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|C Chain C, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|D Chain D, Trypanosoma Brucei Glutathione Synthetase
Length = 562
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 201 PFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSW 260
P EAV R+ L ++ TG + +LQ ++ +L + I R+
Sbjct: 69 PLWNEAVDNTARNFTFLRDALQETAASDVNFTGKLLNMLQEVYLSGGPFQQLMLGIFRTD 128
Query: 261 YQREGYVNSM 270
Y REG + M
Sbjct: 129 YMREGVYDKM 138
>pdb|3M8K|A Chain A, Protein Structure Of Type Iii Plasmid Segregation Tubz
Length = 428
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 224 YPQFSISTTGSSIRVLQNIFREDAY-------LSRLPVSIIRSWYQREG--YVNSMADLI 274
YP +++ S LQNI +ED +R P S++ + E N D +
Sbjct: 53 YPTLAVNFAESDXXHLQNIIKEDRIHFDGLKGAARTP-SVVTDLFDPETNPNANGYLDKL 111
Query: 275 QKELGKFQKPEEVSFIVVAYTFCM 298
+ELG+ EE IV + C+
Sbjct: 112 AQELGRKFTNEEGEVIVDQFLICL 135
>pdb|3U0H|A Chain A, The Structure Of A Xylose Isomerase Domain Protein From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius.
pdb|3U0H|B Chain B, The Structure Of A Xylose Isomerase Domain Protein From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Length = 281
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 88 EYESHAQAAED----KVGVLLLNLGGPDTLHDVQP-FLFNLFADPDIIRL-PRLFRFLQW 141
E E H AA + + G++L NLG P L+D +P FL L PD RL RL
Sbjct: 43 EAERHGDAAVEAXFQRRGLVLANLGLPLNLYDSEPVFLRELSLLPDRARLCARLG----- 97
Query: 142 PLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYP 201
A+ ++ P E P+R I+ + + A+E LP+ VG+ Y P
Sbjct: 98 --ARSVTAFLWPSXDE--------EPVRYISQLARRIRQVAVEL--LPLGXRVGLEYVGP 145
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 74 ICAAGVATYGENAVEYESHAQAAEDKVGVLLL-NLGGPDTLHDVQPFLFNLFADPDIIRL 132
+C A V G+ +S+ D+V LLL NLG + V+P + ++F D +
Sbjct: 666 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725
Query: 133 PRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRK 170
++L+ L L +A K Y + + LR+
Sbjct: 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRE 763
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 74 ICAAGVATYGENAVEYESHAQAAEDKVGVLLL-NLGGPDTLHDVQPFLFNLFADPDIIRL 132
+C A V G+ +S+ D+V LLL NLG + V+P + ++F D +
Sbjct: 666 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725
Query: 133 PRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRK 170
++L+ L L +A K Y + + LR+
Sbjct: 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRE 763
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 74 ICAAGVATYGENAVEYESHAQAAEDKVGVLLL-NLGGPDTLHDVQPFLFNLFADPDIIRL 132
+C A V G+ +S+ D+V LLL NLG + V+P + ++F D +
Sbjct: 541 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 600
Query: 133 PRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRK 170
++L+ L L +A K Y + + LR+
Sbjct: 601 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRE 638
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,636,142
Number of Sequences: 62578
Number of extensions: 339470
Number of successful extensions: 897
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 30
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)