Query 021762
Match_columns 308
No_of_seqs 141 out of 1126
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02449 ferrochelatase 100.0 5.3E-63 1.1E-67 493.2 25.2 218 88-305 78-295 (485)
2 KOG1321 Protoheme ferro-lyase 100.0 8.7E-60 1.9E-64 443.4 21.2 225 77-304 15-245 (395)
3 COG0276 HemH Protoheme ferro-l 100.0 2.9E-58 6.3E-63 438.8 21.8 200 96-303 2-201 (320)
4 PF00762 Ferrochelatase: Ferro 100.0 8.7E-58 1.9E-62 436.7 19.2 202 99-305 1-202 (316)
5 TIGR00109 hemH ferrochelatase. 100.0 1.6E-56 3.5E-61 428.6 21.2 205 96-304 2-206 (322)
6 PRK00035 hemH ferrochelatase; 100.0 2.4E-51 5.1E-56 392.7 22.9 203 98-304 4-207 (333)
7 PRK12435 ferrochelatase; Provi 100.0 1.2E-50 2.5E-55 386.9 21.5 188 96-304 1-192 (311)
8 cd03411 Ferrochelatase_N Ferro 100.0 3.2E-47 7E-52 330.6 16.4 159 100-263 1-159 (159)
9 cd03409 Chelatase_Class_II Cla 99.3 2E-11 4.3E-16 96.8 11.0 75 166-245 13-89 (101)
10 cd03414 CbiX_SirB_C Sirohydroc 98.8 1E-07 2.3E-12 77.9 13.2 110 162-277 6-116 (117)
11 PLN02757 sirohydrochlorine fer 98.8 1.3E-07 2.9E-12 82.5 12.9 114 162-281 19-135 (154)
12 PRK00923 sirohydrochlorin coba 98.8 6.6E-08 1.4E-12 80.5 10.2 110 162-277 7-126 (126)
13 cd03415 CbiX_CbiC Archaeal sir 98.6 8E-07 1.7E-11 75.1 12.4 108 162-276 6-124 (125)
14 PRK02395 hypothetical protein; 98.4 3.1E-06 6.7E-11 80.0 12.2 129 162-298 7-147 (279)
15 PF01903 CbiX: CbiX; InterPro 98.3 1.3E-06 2.9E-11 69.9 6.0 93 174-272 10-105 (105)
16 cd03412 CbiK_N Anaerobic cobal 98.3 2.1E-05 4.6E-10 66.3 12.8 107 163-276 7-125 (127)
17 PRK05782 bifunctional sirohydr 98.2 2E-05 4.4E-10 76.8 12.5 116 159-281 9-135 (335)
18 cd03416 CbiX_SirB_N Sirohydroc 97.9 0.00025 5.4E-09 56.5 11.0 92 163-259 6-99 (101)
19 TIGR00109 hemH ferrochelatase. 97.8 0.0003 6.6E-09 68.0 12.6 108 164-278 205-321 (322)
20 PRK00035 hemH ferrochelatase; 97.7 0.0005 1.1E-08 66.3 12.8 111 163-280 196-325 (333)
21 cd03413 CbiK_C Anaerobic cobal 97.7 0.00014 3E-09 59.5 7.5 62 162-226 6-67 (103)
22 PLN02449 ferrochelatase 97.7 0.00065 1.4E-08 69.3 13.5 113 165-280 295-415 (485)
23 COG2138 Sirohydrochlorin ferro 97.7 0.00036 7.8E-09 65.4 10.3 125 162-295 8-134 (245)
24 PF00762 Ferrochelatase: Ferro 97.5 0.0011 2.3E-08 64.2 11.6 106 164-278 201-316 (316)
25 PRK02395 hypothetical protein; 97.4 0.0019 4.1E-08 61.2 11.9 112 163-282 142-264 (279)
26 PRK12435 ferrochelatase; Provi 97.3 0.0033 7.1E-08 60.8 12.4 108 164-279 191-308 (311)
27 cd00419 Ferrochelatase_C Ferro 96.8 0.018 3.8E-07 49.2 10.4 66 165-232 36-109 (135)
28 PF06180 CbiK: Cobalt chelatas 96.7 0.022 4.8E-07 54.0 11.8 92 200-299 57-154 (262)
29 COG0276 HemH Protoheme ferro-l 96.7 0.027 5.9E-07 54.9 12.2 113 164-279 201-319 (320)
30 PF06180 CbiK: Cobalt chelatas 96.4 0.02 4.4E-07 54.2 9.5 108 161-279 146-262 (262)
31 KOG1321 Protoheme ferro-lyase 95.3 0.091 2E-06 51.4 8.7 108 164-281 244-363 (395)
32 COG4822 CbiK Cobalamin biosynt 92.2 2 4.4E-05 40.2 11.0 82 191-280 169-259 (265)
33 TIGR00640 acid_CoA_mut_C methy 84.2 6.2 0.00013 33.5 7.9 106 99-219 2-110 (132)
34 COG0406 phoE Broad specificity 74.8 54 0.0012 28.8 11.3 126 165-301 26-160 (208)
35 COG0761 lytB 4-Hydroxy-3-methy 70.6 7.3 0.00016 37.7 4.9 68 231-302 15-83 (294)
36 COG1453 Predicted oxidoreducta 65.9 29 0.00064 34.9 8.1 122 171-298 31-157 (391)
37 PRK04147 N-acetylneuraminate l 58.8 60 0.0013 30.7 8.7 63 179-245 63-128 (293)
38 PF00701 DHDPS: Dihydrodipicol 58.4 96 0.0021 29.1 9.9 54 187-244 68-124 (289)
39 cd02167 NMNAT_NadR Nicotinamid 57.3 1.3E+02 0.0027 26.1 9.8 99 197-300 7-114 (158)
40 PF02645 DegV: Uncharacterised 57.3 72 0.0016 29.9 8.9 96 199-305 61-170 (280)
41 cd02072 Glm_B12_BD B12 binding 56.6 23 0.0005 30.2 4.9 80 126-218 27-112 (128)
42 PRK03620 5-dehydro-4-deoxygluc 52.9 81 0.0017 30.1 8.6 56 184-244 71-129 (303)
43 COG4750 LicC CTP:phosphocholin 51.5 15 0.00034 34.0 3.2 48 163-225 9-56 (231)
44 COG4822 CbiK Cobalamin biosynt 50.2 2.1E+02 0.0046 27.1 10.4 157 98-270 1-188 (265)
45 cd00408 DHDPS-like Dihydrodipi 50.1 1E+02 0.0022 28.7 8.6 53 188-244 65-120 (281)
46 COG2108 Uncharacterized conser 50.1 1.3E+02 0.0028 30.0 9.4 74 164-243 86-161 (353)
47 PTZ00322 6-phosphofructo-2-kin 47.2 1.2E+02 0.0026 32.3 9.5 133 161-302 437-593 (664)
48 KOG1322 GDP-mannose pyrophosph 47.0 65 0.0014 32.1 6.9 78 191-282 34-111 (371)
49 PF02633 Creatininase: Creatin 47.0 61 0.0013 29.6 6.5 54 165-222 32-107 (237)
50 PF13684 Dak1_2: Dihydroxyacet 46.2 32 0.0007 33.3 4.7 44 179-223 108-151 (313)
51 TIGR03249 KdgD 5-dehydro-4-deo 45.7 1.2E+02 0.0026 28.7 8.5 53 187-244 72-127 (296)
52 TIGR02313 HpaI-NOT-DapA 2,4-di 45.2 1.3E+02 0.0028 28.6 8.6 62 180-245 60-124 (294)
53 PLN02757 sirohydrochlorine fer 44.9 51 0.0011 28.7 5.3 27 97-123 11-39 (154)
54 PRK09426 methylmalonyl-CoA mut 44.7 88 0.0019 34.0 8.1 110 96-219 579-690 (714)
55 PRK09701 D-allose transporter 44.3 2.5E+02 0.0054 26.1 10.3 10 207-216 100-109 (311)
56 PRK13463 phosphatase PhoE; Pro 44.0 1.1E+02 0.0024 27.1 7.5 42 165-212 26-69 (203)
57 cd06335 PBP1_ABC_ligand_bindin 43.9 1.2E+02 0.0025 28.7 8.1 52 171-222 150-201 (347)
58 TIGR00674 dapA dihydrodipicoli 43.8 1.4E+02 0.0031 28.0 8.6 52 189-244 67-121 (285)
59 TIGR00683 nanA N-acetylneurami 43.7 1.4E+02 0.0031 28.3 8.6 53 188-244 69-124 (290)
60 COG3636 Predicted transcriptio 43.5 61 0.0013 26.7 5.1 78 112-222 19-96 (100)
61 cd06360 PBP1_alkylbenzenes_lik 42.8 2.5E+02 0.0055 25.8 10.1 51 171-221 146-196 (336)
62 PF13407 Peripla_BP_4: Peripla 41.5 91 0.002 27.6 6.6 55 171-226 12-67 (257)
63 cd00952 CHBPH_aldolase Trans-o 41.2 1.1E+02 0.0023 29.4 7.4 70 172-245 59-132 (309)
64 PF03358 FMN_red: NADPH-depend 41.0 55 0.0012 27.1 4.9 74 165-242 8-96 (152)
65 COG2861 Uncharacterized protei 40.1 2E+02 0.0044 27.4 8.8 111 189-306 52-174 (250)
66 PRK15404 leucine ABC transport 40.0 2.3E+02 0.0051 27.3 9.7 50 170-219 172-221 (369)
67 cd06349 PBP1_ABC_ligand_bindin 39.1 3.2E+02 0.007 25.4 11.2 53 170-222 146-198 (340)
68 cd06329 PBP1_SBP_like_3 Peripl 39.1 2.4E+02 0.0051 26.5 9.4 54 169-222 153-209 (342)
69 PF00532 Peripla_BP_1: Peripla 39.0 2.3E+02 0.0049 26.3 9.1 78 171-264 15-92 (279)
70 PLN02417 dihydrodipicolinate s 39.0 1.2E+02 0.0026 28.6 7.2 66 175-244 56-124 (280)
71 cd03174 DRE_TIM_metallolyase D 39.0 3E+02 0.0064 24.9 10.0 73 204-277 77-158 (265)
72 TIGR02017 hutG_amidohyd N-form 38.2 45 0.00097 31.6 4.2 32 265-300 122-153 (263)
73 PF06925 MGDG_synth: Monogalac 37.9 90 0.002 26.8 5.8 36 175-210 4-42 (169)
74 cd06320 PBP1_allose_binding Pe 37.8 2.9E+02 0.0063 24.5 10.6 13 203-215 71-83 (275)
75 smart00855 PGAM Phosphoglycera 37.3 2.1E+02 0.0047 23.6 7.9 46 164-212 22-69 (155)
76 cd00951 KDGDH 5-dehydro-4-deox 37.0 1.3E+02 0.0029 28.3 7.3 52 188-244 68-122 (289)
77 PRK13111 trpA tryptophan synth 36.9 3.7E+02 0.0079 25.4 10.6 108 99-223 12-126 (258)
78 cd07948 DRE_TIM_HCS Saccharomy 36.6 2.2E+02 0.0048 26.7 8.6 77 200-277 71-153 (262)
79 cd03174 DRE_TIM_metallolyase D 36.1 95 0.0021 28.1 6.0 45 179-223 120-168 (265)
80 smart00729 Elp3 Elongator prot 36.0 1.4E+02 0.0031 24.9 6.7 52 173-226 136-192 (216)
81 TIGR00539 hemN_rel putative ox 36.0 79 0.0017 30.8 5.7 54 161-218 56-114 (360)
82 PF00300 His_Phos_1: Histidine 35.6 1E+02 0.0023 24.9 5.6 54 166-224 24-80 (158)
83 cd06343 PBP1_ABC_ligand_bindin 35.6 2E+02 0.0044 27.0 8.3 56 169-225 154-209 (362)
84 PF08029 HisG_C: HisG, C-termi 35.5 36 0.00078 26.3 2.6 25 199-223 48-72 (75)
85 PF06309 Torsin: Torsin; Inte 35.0 62 0.0013 27.7 4.2 36 260-297 27-62 (127)
86 cd00954 NAL N-Acetylneuraminic 34.4 1.7E+02 0.0036 27.6 7.5 65 177-245 58-125 (288)
87 cd06595 GH31_xylosidase_XylS-l 34.1 4.1E+02 0.0089 25.1 11.2 104 172-282 23-149 (292)
88 TIGR03162 ribazole_cobC alpha- 34.0 1.5E+02 0.0033 25.0 6.6 51 165-222 21-74 (177)
89 cd05565 PTS_IIB_lactose PTS_II 33.8 2.6E+02 0.0056 22.7 7.9 68 172-259 13-80 (99)
90 cd06350 PBP1_GPCR_family_C_lik 33.8 2.3E+02 0.005 26.3 8.3 55 171-226 172-228 (348)
91 PRK09590 celB cellobiose phosp 33.6 2.6E+02 0.0057 22.7 7.9 88 171-276 13-102 (104)
92 PF13204 DUF4038: Protein of u 33.1 2.7E+02 0.0058 26.5 8.7 87 203-298 90-189 (289)
93 cd06348 PBP1_ABC_ligand_bindin 33.1 2.2E+02 0.0047 26.6 8.0 55 171-226 149-203 (344)
94 TIGR00262 trpA tryptophan synt 32.8 4.2E+02 0.0091 24.8 10.4 108 99-223 10-124 (256)
95 PRK05799 coproporphyrinogen II 32.5 99 0.0021 30.1 5.8 56 161-218 56-113 (374)
96 cd01545 PBP1_SalR Ligand-bindi 32.3 94 0.002 27.4 5.2 13 204-216 70-82 (270)
97 TIGR00762 DegV EDD domain prot 32.2 2.2E+02 0.0048 26.6 7.9 97 197-305 58-168 (275)
98 cd06267 PBP1_LacI_sugar_bindin 31.7 1E+02 0.0022 26.7 5.2 45 173-222 42-86 (264)
99 cd06327 PBP1_SBP_like_1 Peripl 31.6 1.8E+02 0.004 27.0 7.2 54 169-222 145-198 (334)
100 PF08210 APOBEC_N: APOBEC-like 31.6 49 0.0011 29.8 3.2 104 157-276 72-185 (188)
101 TIGR03599 YloV DAK2 domain fus 31.2 82 0.0018 33.0 5.2 47 177-224 324-370 (530)
102 PF07799 DUF1643: Protein of u 30.6 3E+02 0.0066 22.8 7.7 61 199-266 30-100 (136)
103 COG0635 HemN Coproporphyrinoge 30.4 88 0.0019 31.6 5.1 60 162-226 93-156 (416)
104 cd01539 PBP1_GGBP Periplasmic 29.7 4.3E+02 0.0092 24.3 9.3 54 171-224 13-67 (303)
105 cd06334 PBP1_ABC_ligand_bindin 29.6 3.1E+02 0.0067 26.2 8.6 54 171-225 152-205 (351)
106 PF04748 Polysacc_deac_2: Dive 29.6 2.1E+02 0.0045 26.2 7.0 40 188-227 19-58 (213)
107 PF01012 ETF: Electron transfe 29.4 3.5E+02 0.0076 22.8 10.7 72 199-279 42-114 (164)
108 cd01542 PBP1_TreR_like Ligand- 29.2 1.3E+02 0.0027 26.5 5.4 11 205-215 69-79 (259)
109 PRK06582 coproporphyrinogen II 29.0 1.3E+02 0.0029 29.9 6.1 114 162-279 68-188 (390)
110 cd06331 PBP1_AmiC_like Type I 28.8 3.4E+02 0.0073 25.2 8.5 52 171-222 144-195 (333)
111 cd06286 PBP1_CcpB_like Ligand- 28.8 1.3E+02 0.0028 26.5 5.4 18 205-222 46-63 (260)
112 PF13653 GDPD_2: Glycerophosph 28.6 48 0.001 21.4 1.9 23 197-219 3-25 (30)
113 PF05036 SPOR: Sporulation rel 28.5 1.6E+02 0.0035 20.9 5.1 48 172-219 14-74 (76)
114 PRK06934 flavodoxin; Provision 28.4 3.4E+02 0.0074 25.2 8.3 27 171-199 72-98 (221)
115 cd00950 DHDPS Dihydrodipicolin 28.3 3.3E+02 0.0072 25.3 8.3 52 189-244 69-123 (284)
116 cd06346 PBP1_ABC_ligand_bindin 28.0 3E+02 0.0065 25.4 8.0 55 171-226 149-203 (312)
117 COG0329 DapA Dihydrodipicolina 27.9 4.1E+02 0.009 25.4 9.0 77 164-245 49-128 (299)
118 PRK12360 4-hydroxy-3-methylbut 27.5 84 0.0018 30.3 4.2 17 286-302 69-85 (281)
119 PF07881 Fucose_iso_N1: L-fuco 27.4 76 0.0016 28.6 3.6 60 168-229 23-89 (171)
120 cd06340 PBP1_ABC_ligand_bindin 27.4 5.2E+02 0.011 24.2 10.9 52 170-221 155-206 (347)
121 cd06345 PBP1_ABC_ligand_bindin 27.1 1.9E+02 0.0042 27.0 6.6 53 170-222 155-207 (344)
122 PF05013 FGase: N-formylglutam 26.5 60 0.0013 29.5 2.9 32 265-300 114-145 (222)
123 PTZ00242 protein tyrosine phos 26.4 3.6E+02 0.0079 23.5 7.7 82 199-296 25-109 (166)
124 PF13458 Peripla_BP_6: Peripla 26.3 2.2E+02 0.0047 26.2 6.7 56 169-225 145-200 (343)
125 COG1609 PurR Transcriptional r 26.3 2.5E+02 0.0055 26.9 7.3 79 170-264 71-150 (333)
126 PRK11658 UDP-4-amino-4-deoxy-L 26.3 1.2E+02 0.0025 29.7 5.0 14 203-216 306-319 (379)
127 cd06355 PBP1_FmdD_like Peripla 26.2 3.5E+02 0.0076 25.5 8.2 55 170-225 144-198 (348)
128 cd06312 PBP1_ABC_sugar_binding 25.9 1.2E+02 0.0025 27.1 4.7 41 173-216 44-84 (271)
129 TIGR01501 MthylAspMutase methy 25.7 2.2E+02 0.0047 24.4 6.0 83 126-218 29-114 (134)
130 PRK03170 dihydrodipicolinate s 25.6 2.5E+02 0.0055 26.3 7.0 51 189-243 70-123 (292)
131 cd07939 DRE_TIM_NifV Streptomy 25.3 5.4E+02 0.012 23.7 9.2 72 204-277 72-151 (259)
132 PRK08446 coproporphyrinogen II 25.2 1.5E+02 0.0032 28.9 5.5 54 162-219 57-113 (350)
133 PF01261 AP_endonuc_2: Xylose 24.7 4.2E+02 0.0092 22.3 8.7 69 173-241 26-112 (213)
134 PRK08898 coproporphyrinogen II 24.5 1.4E+02 0.0031 29.6 5.3 55 162-220 79-138 (394)
135 PF14226 DIOX_N: non-haem diox 24.3 1.2E+02 0.0026 23.9 4.0 29 268-301 14-42 (116)
136 PRK01045 ispH 4-hydroxy-3-meth 24.3 1.2E+02 0.0026 29.5 4.6 17 286-302 66-82 (298)
137 TIGR03588 PseC UDP-4-keto-6-de 24.0 64 0.0014 31.2 2.7 15 202-216 308-322 (380)
138 PRK05928 hemD uroporphyrinogen 23.9 5E+02 0.011 22.8 8.9 46 175-220 136-183 (249)
139 TIGR00433 bioB biotin syntheta 23.7 2.4E+02 0.0051 26.2 6.4 53 163-220 87-139 (296)
140 cd07938 DRE_TIM_HMGL 3-hydroxy 23.7 3.3E+02 0.0071 25.7 7.4 50 171-220 111-168 (274)
141 cd06336 PBP1_ABC_ligand_bindin 23.6 2.8E+02 0.0061 26.1 7.0 51 171-221 150-200 (347)
142 cd07940 DRE_TIM_IPMS 2-isoprop 23.5 6E+02 0.013 23.6 9.1 79 197-276 69-154 (268)
143 TIGR00216 ispH_lytB (E)-4-hydr 23.4 1.4E+02 0.003 28.8 4.8 17 286-302 66-82 (280)
144 PRK06294 coproporphyrinogen II 23.4 1.9E+02 0.0041 28.4 6.0 52 163-219 65-118 (370)
145 PRK11706 TDP-4-oxo-6-deoxy-D-g 23.3 1.6E+02 0.0034 28.6 5.3 15 202-216 301-315 (375)
146 TIGR03455 HisG_C-term ATP phos 23.2 87 0.0019 25.4 3.0 25 199-223 72-96 (100)
147 PF15186 TEX13: Testis-express 23.2 31 0.00067 30.4 0.3 27 103-129 22-56 (152)
148 cd06347 PBP1_ABC_ligand_bindin 23.2 2.7E+02 0.0058 25.5 6.6 50 171-220 148-197 (334)
149 cd06322 PBP1_ABC_sugar_binding 23.0 1.6E+02 0.0035 26.0 5.0 43 173-218 42-84 (267)
150 cd00860 ThrRS_anticodon ThrRS 23.0 3.1E+02 0.0068 20.1 5.9 48 171-222 12-59 (91)
151 TIGR01212 radical SAM protein, 22.9 6.7E+02 0.014 23.9 12.8 120 100-226 78-218 (302)
152 PRK15004 alpha-ribazole phosph 22.8 4.9E+02 0.011 22.7 8.0 42 165-212 24-67 (199)
153 TIGR03470 HpnH hopanoid biosyn 22.8 1.8E+02 0.004 27.9 5.6 51 176-227 152-204 (318)
154 TIGR01743 purR_Bsub pur operon 22.7 4.3E+02 0.0094 25.3 8.0 75 224-300 70-144 (268)
155 PF03652 UPF0081: Uncharacteri 22.6 4.7E+02 0.01 22.1 8.1 66 196-263 33-99 (135)
156 cd06342 PBP1_ABC_LIVBP_like Ty 22.5 2.4E+02 0.0052 25.9 6.2 55 170-225 146-200 (334)
157 cd06358 PBP1_NHase Type I peri 22.0 3.9E+02 0.0085 24.8 7.6 50 171-220 144-193 (333)
158 PRK09249 coproporphyrinogen II 22.0 1.9E+02 0.0042 29.1 5.8 56 162-219 108-166 (453)
159 PRK07238 bifunctional RNase H/ 22.0 5.2E+02 0.011 25.1 8.6 43 165-212 195-239 (372)
160 cd06305 PBP1_methylthioribose_ 21.9 1.8E+02 0.0039 25.7 5.1 41 173-216 42-82 (273)
161 smart00518 AP2Ec AP endonuclea 21.7 6.1E+02 0.013 23.0 10.3 119 171-291 42-172 (273)
162 cd06298 PBP1_CcpA_like Ligand- 21.4 2E+02 0.0044 25.2 5.3 39 173-216 42-80 (268)
163 cd01540 PBP1_arabinose_binding 21.4 1.3E+02 0.0029 27.0 4.1 45 173-220 41-85 (289)
164 PRK08207 coproporphyrinogen II 21.2 2.1E+02 0.0046 29.5 5.9 110 162-277 224-345 (488)
165 cd06321 PBP1_ABC_sugar_binding 21.1 5.8E+02 0.012 22.5 11.0 14 203-216 71-84 (271)
166 cd06425 M1P_guanylylT_B_like_N 21.1 4.2E+02 0.0092 23.4 7.3 14 162-176 28-41 (233)
167 cd01541 PBP1_AraR Ligand-bindi 21.0 1.9E+02 0.0042 25.6 5.1 43 173-216 42-85 (273)
168 cd00578 L-fuc_L-ara-isomerases 21.0 7.1E+02 0.015 25.0 9.6 26 251-276 126-151 (452)
169 PRK05904 coproporphyrinogen II 21.0 2.5E+02 0.0055 27.5 6.2 53 162-218 62-117 (353)
170 cd06270 PBP1_GalS_like Ligand 21.0 2.1E+02 0.0046 25.3 5.4 44 172-221 41-84 (268)
171 cd06328 PBP1_SBP_like_2 Peripl 20.9 2.7E+02 0.0059 26.1 6.3 52 170-221 147-198 (333)
172 cd06356 PBP1_Amide_Urea_BP_lik 20.9 2.5E+02 0.0053 26.4 6.0 50 171-220 144-193 (334)
173 PRK14569 D-alanyl-alanine synt 20.8 2.4E+02 0.0052 26.6 5.9 53 163-223 11-63 (296)
174 PRK07379 coproporphyrinogen II 20.7 2.2E+02 0.0049 28.3 5.9 57 162-220 72-131 (400)
175 COG0683 LivK ABC-type branched 20.7 3.8E+02 0.0083 25.8 7.4 56 171-226 160-215 (366)
176 PRK13347 coproporphyrinogen II 20.6 2.1E+02 0.0045 29.0 5.7 59 158-219 105-167 (453)
177 cd06338 PBP1_ABC_ligand_bindin 20.5 6.8E+02 0.015 23.1 10.1 55 171-226 153-207 (345)
178 PTZ00445 p36-lilke protein; Pr 20.2 7.2E+02 0.016 23.3 10.1 108 157-267 14-150 (219)
No 1
>PLN02449 ferrochelatase
Probab=100.00 E-value=5.3e-63 Score=493.17 Aligned_cols=218 Identities=70% Similarity=1.123 Sum_probs=203.8
Q ss_pred ccccccccCCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCc
Q 021762 88 EYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSP 167 (308)
Q Consensus 88 ~~~~~~~~~~~K~aVLLlNlGgPes~~dV~~FL~n~f~D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSP 167 (308)
...++.+.+++|+||||+|||||++++||++||+|||+||+||++|+++|++|++|+.+|+++|++|++++|++||||||
T Consensus 78 ~~~~~~~~~~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGgSP 157 (485)
T PLN02449 78 AVADHPKVSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSP 157 (485)
T ss_pred cccccccccCCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCCCc
Confidence 44566666788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhc
Q 021762 168 LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDA 247 (308)
Q Consensus 168 L~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~ 247 (308)
|+++|++|+++|+++|++.+.+++|++|||||+|+|+|++++|+++|+++||+||||||||.+||||+++.+++++++..
T Consensus 158 L~~iT~~Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~ 237 (485)
T PLN02449 158 LRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 237 (485)
T ss_pred hHHHHHHHHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcc
Confidence 99999999999999998877899999999999999999999999999999999999999999999999999999988765
Q ss_pred cCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEeCCCCchhhhhcC
Q 021762 248 YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVSFIVVAYTFCMVPLQKFG 305 (308)
Q Consensus 248 ~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHglP~r~v~~~~ 305 (308)
....+++++|++||++|+||+|++++|++++++++++++++|||||||||+++++++|
T Consensus 238 ~~~~~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAHGlP~~~v~~~G 295 (485)
T PLN02449 238 YLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAG 295 (485)
T ss_pred cccCCeeEEeccccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecCCChhhhhhhcC
Confidence 4345689999999999999999999999999887666778999999999999997666
No 2
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=100.00 E-value=8.7e-60 Score=443.43 Aligned_cols=225 Identities=46% Similarity=0.713 Sum_probs=204.6
Q ss_pred ccceeecCCcccccccccc-CCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhh
Q 021762 77 AGVATYGENAVEYESHAQA-AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKS 155 (308)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~K~aVLLlNlGgPes~~dV~~FL~n~f~D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks 155 (308)
.+.+++...+..-.+.+.. .+.|+||||||||||++++||.+||.++|.|++||+||+ |+|..|+++|+++|+||+
T Consensus 15 ~t~~~~~~s~~a~~~~~~~~~k~ktgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~---~~Q~~lakfIak~RtPKv 91 (395)
T KOG1321|consen 15 STQLTISASSSATFSSSVAQKKPKTGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPA---FLQKTLAKFIAKRRTPKV 91 (395)
T ss_pred cCcccccCCccccccccccccCCCceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCH---HHHhhHHHHHHHhcCchH
Confidence 3444555442222233223 455899999999999999999999999999999999996 579999999999999999
Q ss_pred HHhhcccCCCCchhHHHHHHHHHHHHHHHhcC---CCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccch
Q 021762 156 KEGYAAIGGGSPLRKITDEQAQALKTALEAKN---LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTT 232 (308)
Q Consensus 156 ~~~Y~~IGggSPL~~iT~~Qa~aL~~~L~~~g---~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTt 232 (308)
+++|+.|||||||+.||+.|++.+.+.|++.. ....+|+|||||+|+++|+++||+++|++|+|++|+|||||++|+
T Consensus 92 qe~Y~~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTs 171 (395)
T KOG1321|consen 92 QEQYREIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTS 171 (395)
T ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEEeeccCCceeeecC
Confidence 99999999999999999999999999999876 578999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhcCCC--CceEEEEEeCCCCchhhhhc
Q 021762 233 GSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKP--EEVSFIVVAYTFCMVPLQKF 304 (308)
Q Consensus 233 gS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~~~--~~~~LLFSaHglP~r~v~~~ 304 (308)
||+++.+.+.++++++..++++.+|++|+.+++||+++|++|++.|++|+.| ++++|+|||||+|+.+|.++
T Consensus 172 GSSln~l~r~~r~~~~~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~Vn~G 245 (395)
T KOG1321|consen 172 GSSLNELWRQFREDGYERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVNAG 245 (395)
T ss_pred cccHHHHHHHHHhcCcccCCceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHHhcC
Confidence 9999999999999998889999999999999999999999999999999876 78999999999999999843
No 3
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-58 Score=438.81 Aligned_cols=200 Identities=41% Similarity=0.660 Sum_probs=188.8
Q ss_pred CCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHH
Q 021762 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (308)
Q Consensus 96 ~~~K~aVLLlNlGgPes~~dV~~FL~n~f~D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Q 175 (308)
+.+|+||||||||||++++||++||+|||+||+|+++|+++|+ ||+++|++.|++|++++|++|||+|||+.+|++|
T Consensus 2 ~~~k~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~~---~l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q 78 (320)
T COG0276 2 KMKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWY---PLAGIILPLRLKKVAKNYESIGGKSPLNVITRAQ 78 (320)
T ss_pred CCCceEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhhh---hhhhhhhhhccHHHHHHHHHhcCCCccHHHHHHH
Confidence 4578999999999999999999999999999999999987654 3999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeE
Q 021762 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVS 255 (308)
Q Consensus 176 a~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~ 255 (308)
+++|+++|+ ..++.|++|||||+|+|+|++++|+++|+++||+||||||||++|||++++.+.+++++.+ ..++++
T Consensus 79 ~~~L~~~L~--~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~--~~~~i~ 154 (320)
T COG0276 79 AAALEERLD--LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELR--GQPKIS 154 (320)
T ss_pred HHHHHHHhC--CCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcC--CCCceE
Confidence 999999998 4489999999999999999999999999999999999999999999999999999998876 347899
Q ss_pred EccCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEeCCCCchhhhh
Q 021762 256 IIRSWYQREGYVNSMADLIQKELGKFQKPEEVSFIVVAYTFCMVPLQK 303 (308)
Q Consensus 256 ~I~~~~~~p~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHglP~r~v~~ 303 (308)
+|++||++|+||+|||++|++.+++++ .++.+|||||||||++++++
T Consensus 155 ~I~~~~~~p~yI~a~a~~I~~~~~~~~-~~~~~llfSaHglP~~~~~~ 201 (320)
T COG0276 155 TIPDYYDEPLYIEALADSIREKLAKHP-RDDDVLLFSAHGLPKRYIDE 201 (320)
T ss_pred EecCccCChHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCchhhhhc
Confidence 999999999999999999999999987 45679999999999999998
No 4
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=8.7e-58 Score=436.66 Aligned_cols=202 Identities=38% Similarity=0.626 Sum_probs=175.3
Q ss_pred ceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHH
Q 021762 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQA 178 (308)
Q Consensus 99 K~aVLLlNlGgPes~~dV~~FL~n~f~D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Qa~a 178 (308)
|+||||+|||||++++||++||++||+|++||++| ++ ||++|+++|+++|++|++++|++|||+|||+.+|++|+++
T Consensus 1 K~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp-~~--~~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~ 77 (316)
T PF00762_consen 1 KTAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLP-WL--WQPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEA 77 (316)
T ss_dssp EEEEEEEE----SSGGGHHHHHHHHTTTTTTSHST-TT--THHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCC-ch--hHHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 78999999999999999999999999999999999 54 5679999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeEEcc
Q 021762 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIR 258 (308)
Q Consensus 179 L~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~ 258 (308)
|+++|++.+.+++|++|||||+|+|++++++|+++|+++||+||||||||.+|||++++.+++++++.. ..+++++|+
T Consensus 78 l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~--~~~~~~~i~ 155 (316)
T PF00762_consen 78 LQQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSR--PNPKVRFIP 155 (316)
T ss_dssp HHHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTH--SSSEEEEE-
T ss_pred HHHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcC--CCCeEEEeC
Confidence 999999877889999999999999999999999999999999999999999999999999999998754 346799999
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEeCCCCchhhhhcC
Q 021762 259 SWYQREGYVNSMADLIQKELGKFQKPEEVSFIVVAYTFCMVPLQKFG 305 (308)
Q Consensus 259 ~~~~~p~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHglP~r~v~~~~ 305 (308)
+||+||.||+||+++|++++++++.++..+|||||||||.+.++++|
T Consensus 156 ~~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~~~~G 202 (316)
T PF00762_consen 156 SFYDHPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYVEDKG 202 (316)
T ss_dssp --TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCccccccCC
Confidence 99999999999999999999987533357999999999999997666
No 5
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=1.6e-56 Score=428.61 Aligned_cols=205 Identities=45% Similarity=0.741 Sum_probs=189.1
Q ss_pred CCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHH
Q 021762 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (308)
Q Consensus 96 ~~~K~aVLLlNlGgPes~~dV~~FL~n~f~D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Q 175 (308)
+++|+||||||||||+|++||++||+|||+|++||++|+++ +|++++.+|+++|++|++++|++|||+|||+.+|++|
T Consensus 2 ~~~k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~--~~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q 79 (322)
T TIGR00109 2 KRKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAK--WRKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQ 79 (322)
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCccc--cccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHH
Confidence 45678999999999999999999999999999999999754 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeE
Q 021762 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVS 255 (308)
Q Consensus 176 a~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~ 255 (308)
+++|++.|++. .+++|++|||||+|+|++++++|+++|+++|++||||||||.+|+|++++.+.+++++.... .++++
T Consensus 80 ~~~l~~~l~~~-~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~-~~~~~ 157 (322)
T TIGR00109 80 AHALEKRLPNE-IDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSL-RPTIS 157 (322)
T ss_pred HHHHHHHhccC-CCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccC-CCeEE
Confidence 99999999754 57999999999999999999999999999999999999999999999999999999876521 15799
Q ss_pred EccCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEeCCCCchhhhhc
Q 021762 256 IIRSWYQREGYVNSMADLIQKELGKFQKPEEVSFIVVAYTFCMVPLQKF 304 (308)
Q Consensus 256 ~I~~~~~~p~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHglP~r~v~~~ 304 (308)
+|++||++|.||+|++++|++++++++.+++++|||||||||++.++++
T Consensus 158 ~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~~~G 206 (322)
T TIGR00109 158 VIESWYDNPKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYVDEG 206 (322)
T ss_pred EeCccccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHhhCC
Confidence 9999999999999999999999988765566789999999999999873
No 6
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=2.4e-51 Score=392.71 Aligned_cols=203 Identities=43% Similarity=0.659 Sum_probs=188.8
Q ss_pred CceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHH
Q 021762 98 DKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQ 177 (308)
Q Consensus 98 ~K~aVLLlNlGgPes~~dV~~FL~n~f~D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Qa~ 177 (308)
+|+||||||||||++++||++||+|||+||+|+++|+++| +++|+++|++.|++|++++|+.|||||||+++|++|++
T Consensus 4 ~k~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~--~~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~~ 81 (333)
T PRK00035 4 PKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLW--QPLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQAE 81 (333)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHH--HHHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHHH
Confidence 6899999999999999999999999999999999999775 47899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeEEc
Q 021762 178 ALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSII 257 (308)
Q Consensus 178 aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I 257 (308)
+|++.|++.+.++.|++||+||+|+++|++++|+++|+++|+|+|||||||.+|+|++.+.+.+++++... .++++++
T Consensus 82 ~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~--~~~i~~i 159 (333)
T PRK00035 82 ALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRL--QPEIRFI 159 (333)
T ss_pred HHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHhcCC--CCcEEEe
Confidence 99999987777899999999999999999999999999999999999999999999999999999887552 4689999
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhcCCC-CceEEEEEeCCCCchhhhhc
Q 021762 258 RSWYQREGYVNSMADLIQKELGKFQKP-EEVSFIVVAYTFCMVPLQKF 304 (308)
Q Consensus 258 ~~~~~~p~YI~a~a~~I~e~l~~~~~~-~~~~LLFSaHglP~r~v~~~ 304 (308)
++|+++|.||++++++|++++++.+.+ ++..||||+||+|.+.++++
T Consensus 160 ~~~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~~g 207 (333)
T PRK00035 160 RSYYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYIDKG 207 (333)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhhcC
Confidence 999999999999999999999876543 45789999999999988553
No 7
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=1.2e-50 Score=386.92 Aligned_cols=188 Identities=28% Similarity=0.449 Sum_probs=164.8
Q ss_pred CCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHH
Q 021762 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (308)
Q Consensus 96 ~~~K~aVLLlNlGgPes~~dV~~FL~n~f~D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Q 175 (308)
|++|+||||||||||++++||+|||+|+|.|+. |. +..|+. .+++|++|||+|||+.+|++|
T Consensus 1 ~~~~~avlll~~GgP~~~~~V~pfL~ni~~g~~----~~-----~~~l~~---------~~~~Y~~iGG~SPL~~~T~~q 62 (311)
T PRK12435 1 MKKKIGLLVMAYGTPYKEEDIERYYTHIRHGRK----PS-----EEMLQD---------LKDRYEAIGGISPLAKITDEQ 62 (311)
T ss_pred CCCcEEEEEEeCCCCCCHHHHHHHHHHhcCCCC----CC-----HHHHHH---------HHHHHHHhCCcChHHHHHHHH
Confidence 356789999999999999999999999999972 21 122332 369999999999999999999
Q ss_pred HHHHHHHHHhc--CCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCC
Q 021762 176 AQALKTALEAK--NLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLP 253 (308)
Q Consensus 176 a~aL~~~L~~~--g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~ 253 (308)
+++|+++|++. +.+++|++|||||+|+|+|++++|+++|+++||+||||||||.+||||+.+.+.++.++. ..++
T Consensus 63 a~~L~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~~~~~---~~~~ 139 (311)
T PRK12435 63 AKALEKALNEVQDEVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEEAEKL---GGPT 139 (311)
T ss_pred HHHHHHHHhhccCCCCceEEEEecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHHhccc---CCCe
Confidence 99999999864 457999999999999999999999999999999999999999999999998887766542 2467
Q ss_pred eEEccCCCCChHHHHHHHHHHHHHHhhcCCC--CceEEEEEeCCCCchhhhhc
Q 021762 254 VSIIRSWYQREGYVNSMADLIQKELGKFQKP--EEVSFIVVAYTFCMVPLQKF 304 (308)
Q Consensus 254 v~~I~~~~~~p~YI~a~a~~I~e~l~~~~~~--~~~~LLFSaHglP~r~v~~~ 304 (308)
+++|++||+||+||+|++++|++++++++.+ ++++|||||||||+++++++
T Consensus 140 ~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~G 192 (311)
T PRK12435 140 ITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIAAG 192 (311)
T ss_pred EEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhhCC
Confidence 9999999999999999999999999887432 56789999999999999764
No 8
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=3.2e-47 Score=330.60 Aligned_cols=159 Identities=46% Similarity=0.761 Sum_probs=150.1
Q ss_pred eEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHHH
Q 021762 100 VGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQAL 179 (308)
Q Consensus 100 ~aVLLlNlGgPes~~dV~~FL~n~f~D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Qa~aL 179 (308)
+||||+|||||++++||++||.+||+|++||++|.++ |++|+.+|+++|++|++++|++|||||||+.+|++|+++|
T Consensus 1 ~~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p~~~---~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l 77 (159)
T cd03411 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRPL---RPILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEAL 77 (159)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHH---HHHHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 5999999999999999999999999999999999765 6789999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeEEccC
Q 021762 180 KTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRS 259 (308)
Q Consensus 180 ~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~ 259 (308)
++.|++.+.++.|++|||||+|+|+|++++|+++|+++|+++|||||||.+|||++++.+.+++++... .+++++|++
T Consensus 78 ~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~~~~--~~~~~~i~~ 155 (159)
T cd03411 78 EKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKLRP--APELRVIRS 155 (159)
T ss_pred HHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHhcCC--CCcEEEeCc
Confidence 999987666899999999999999999999999999999999999999999999999999999887642 357999999
Q ss_pred CCCC
Q 021762 260 WYQR 263 (308)
Q Consensus 260 ~~~~ 263 (308)
||++
T Consensus 156 ~~~~ 159 (159)
T cd03411 156 FYDH 159 (159)
T ss_pred cccC
Confidence 9985
No 9
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.31 E-value=2e-11 Score=96.77 Aligned_cols=75 Identities=27% Similarity=0.353 Sum_probs=62.2
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCceeEEeeecC-CCCHHHHHHHHHHcCCCEEEEeecCccccccchh-hHHHHHHHHH
Q 021762 166 SPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTG-SSIRVLQNIF 243 (308)
Q Consensus 166 SPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~-~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtg-S~~~~l~ea~ 243 (308)
||.+..+++++++|+++++ +..|++||+++ .|++++++++|.++|+++|+++||||+ +..++. ...+.+.+..
T Consensus 13 s~~~~~~~~~~~~l~~~~~----~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~-~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 13 DPYKKDIEAQAHNLAESLP----DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV-SGDEVFYDIDSEIGLVR 87 (101)
T ss_pred ccHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc-cChhhHHHHHHHHHHHH
Confidence 4677788888888887764 57899999999 999999999999999999999999999 555555 6666666665
Q ss_pred HH
Q 021762 244 RE 245 (308)
Q Consensus 244 ~e 245 (308)
+.
T Consensus 88 ~~ 89 (101)
T cd03409 88 KQ 89 (101)
T ss_pred Hh
Confidence 43
No 10
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.83 E-value=1e-07 Score=77.92 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=83.6
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeec-CCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHH
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRY-WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY-~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ 240 (308)
+|.||+.... .+..+.+.+.|.++.....|+.|+-. +.|.++++++++.++|+++|+++|+|-. .|...+.+.
T Consensus 6 v~HGS~~~~~-~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~-----~G~h~~~i~ 79 (117)
T cd03414 6 VGRGSSDPDA-NADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLF-----TGVLMDRIE 79 (117)
T ss_pred EcCCCCCHHH-HHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhc-----CCchHHHHH
Confidence 4667875544 45777788888766555788988654 6999999999999999999999999877 333444455
Q ss_pred HHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHH
Q 021762 241 NIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKE 277 (308)
Q Consensus 241 ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~ 277 (308)
+.+.+....+...+.+-++...+|.++++++++++++
T Consensus 80 ~~~~~~~~~~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 80 EQVAELAAEPGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred HHHHHHHhCCCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 5544432224567899999999999999999999875
No 11
>PLN02757 sirohydrochlorine ferrochelatase
Probab=98.77 E-value=1.3e-07 Score=82.47 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=85.6
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHH-HHH
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI-RVL 239 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~A-MrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~-~~l 239 (308)
+|.||+-.. ..+..+++.+.|.++.....|..| |.+..|+++++++++.+.|+++|+|+|+|-. .|... +++
T Consensus 19 vgHGSrd~~-a~~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~-----~G~H~~~DI 92 (154)
T PLN02757 19 VDHGSRRKE-SNLMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLS-----PGRHWQEDI 92 (154)
T ss_pred EeCCCCCHH-HHHHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhc-----CCcchHhHH
Confidence 477888775 344455566666544323345555 7899999999999999999999999999987 55554 345
Q ss_pred HHHHHHhc-cCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhc
Q 021762 240 QNIFREDA-YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (308)
Q Consensus 240 ~ea~~e~~-~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~ 281 (308)
.+.+++.. .++.+++.+-++...||.+++++++++++++...
T Consensus 93 p~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 93 PALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 55554332 3456789999999999999999999999998653
No 12
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.76 E-value=6.6e-08 Score=80.52 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=82.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHH-HHH
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI-RVL 239 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~A-MrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~-~~l 239 (308)
+|.||+.. .+.+..+++.+.|.+++....|+.| |.|..|++++++++|.+.|+++|+|+|+|-. .|... +++
T Consensus 7 v~hGS~~~-~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~-----~G~h~~~di 80 (126)
T PRK00923 7 VGHGSRLP-YNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLA-----HGVHTKRDI 80 (126)
T ss_pred EeCCCCCh-HHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhc-----cCccccccc
Confidence 36778764 4457778888888776666778888 7899999999999999999999999999966 33322 223
Q ss_pred HHHHH-------Hh-ccCCCCCeEEccCCCCChHHHHHHHHHHHHH
Q 021762 240 QNIFR-------ED-AYLSRLPVSIIRSWYQREGYVNSMADLIQKE 277 (308)
Q Consensus 240 ~ea~~-------e~-~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~ 277 (308)
.+.+. +. ...+.+.+.+-++...||.+++++.++++++
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 81 PRILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred chhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 32222 11 1124567889999999999999999999763
No 13
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.61 E-value=8e-07 Score=75.15 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=80.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHH-HHH
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI-RVL 239 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~A-MrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~-~~l 239 (308)
+|.||+..+.. +..+.|.+.|.+. .++.|+.| |-+..|+++|+++++.++|+++|+|+|+|.. .|... +++
T Consensus 6 vgHGSR~~~~~-~~~~~la~~l~~~-~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~-----~G~Hv~~Di 78 (125)
T cd03415 6 ITHGSRRNTFN-EDMEEWAAYLERK-LGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLG-----RGNHVARDI 78 (125)
T ss_pred EecCCCChHHH-HHHHHHHHHHHhc-cCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhcc-----CCcchHHHH
Confidence 47788887554 4455566666532 34567877 7899999999999999999999999999886 33332 455
Q ss_pred HHHHHHh--------cc-CCCCCeEEccCCCCChHHHHHHHHHHHH
Q 021762 240 QNIFRED--------AY-LSRLPVSIIRSWYQREGYVNSMADLIQK 276 (308)
Q Consensus 240 ~ea~~e~--------~~-~~~i~v~~I~~~~~~p~YI~a~a~~I~e 276 (308)
.+.+.+. .+ .+.+.+.+-+....||.+.+++++++.+
T Consensus 79 P~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 79 MGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred HHHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 5555541 11 1345699999999999999999999876
No 14
>PRK02395 hypothetical protein; Provisional
Probab=98.41 E-value=3.1e-06 Score=80.04 Aligned_cols=129 Identities=17% Similarity=0.137 Sum_probs=96.5
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHH-HHHH
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI-RVLQ 240 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~-~~l~ 240 (308)
+|.||+......+..+.+.+.|.+++....|.+||--..|+++++++++. .++|+|+|+|-. .|... +++.
T Consensus 7 vgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~~P~l~~~l~~l~---~~~ivVvPlfL~-----~G~Hv~~DIP 78 (279)
T PRK02395 7 VGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKEEPSLRQVLRTVE---SDEVYVVPLFIS-----EGYFTEQVIP 78 (279)
T ss_pred EeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccCCCCHHHHHHhcC---cCcEEEEeeEec-----cccchhhhhH
Confidence 47789877677777888888887665555788886559999999999985 589999999985 44443 3566
Q ss_pred HHHHHh-----ccCC------CCCeEEccCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEeCCCCc
Q 021762 241 NIFRED-----AYLS------RLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVSFIVVAYTFCM 298 (308)
Q Consensus 241 ea~~e~-----~~~~------~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHglP~ 298 (308)
+.+... ...+ .+.+.+-+++..+|.+++++++++.+.....+.+++..+|+-.||-+.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~~~~~alvlvgHGS~~ 147 (279)
T PRK02395 79 RELGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMADVIAARARSVTGDPDVGEDTALAVVGHGTER 147 (279)
T ss_pred HHhcCCcCCccccccccccCCCceEEeCCCCCCChHHHHHHHHHHHHhhcCCCCCcCceEEEEecCCCC
Confidence 665431 0111 567888999999999999999999988764322345679999999864
No 15
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.30 E-value=1.3e-06 Score=69.92 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCCceeEEee-ecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHH-HHHHHHHHhc-cCC
Q 021762 174 EQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIR-VLQNIFREDA-YLS 250 (308)
Q Consensus 174 ~Qa~aL~~~L~~~g~~~~V~~AM-rY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~-~l~ea~~e~~-~~~ 250 (308)
...+.+.+.|.++.. ..|.+|| .+..|+++++++++.+.|+++|+|+|+|-. .|...+ ++.+.+++.. ..+
T Consensus 10 ~~~~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL~-----~G~h~~~DIp~~l~~~~~~~~ 83 (105)
T PF01903_consen 10 AELEDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFLF-----PGYHVKRDIPEALAEARERHP 83 (105)
T ss_dssp HHHHHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESSS-----SSHHHHCHHHHHHCHHHHCST
T ss_pred HHHHHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeeec-----CccchHhHHHHHHHHHHhhCC
Confidence 334555555555444 7888886 689999999999999999999999999986 444443 3666654433 334
Q ss_pred CCCeEEccCCCCChHHHHHHHH
Q 021762 251 RLPVSIIRSWYQREGYVNSMAD 272 (308)
Q Consensus 251 ~i~v~~I~~~~~~p~YI~a~a~ 272 (308)
++++.+-++...+|...+++++
T Consensus 84 ~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 84 GIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp TEEEEE---GGGSCCHHHHHH-
T ss_pred ceEEEECCCCCCCHHHHHHHhC
Confidence 5679999999999999998864
No 16
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.27 E-value=2.1e-05 Score=66.28 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=82.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeee------------cCCCCHHHHHHHHHHcCCCEEEEeecCcccccc
Q 021762 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMR------------YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSIS 230 (308)
Q Consensus 163 GggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMr------------Y~~P~I~eal~~L~~~GidrIVvLPLyPqyS~s 230 (308)
|-||--. ..++-.+++.+.+.+...++.|+.||. -..|+++|++++|.++|+++|+|+|++-.
T Consensus 7 ~fGS~~~-~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~---- 81 (127)
T cd03412 7 SFGTSYP-TAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHII---- 81 (127)
T ss_pred eCCCCCH-HHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeE----
Confidence 4455444 444466777777777667899999975 45899999999999999999999999887
Q ss_pred chhhHHHHHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHH
Q 021762 231 TTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276 (308)
Q Consensus 231 TtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e 276 (308)
.|...+.+.+.+++.. .+...+.+-++.-.++.-++.+++.|.+
T Consensus 82 -~G~e~~di~~~v~~~~-~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 82 -PGEEYEKLKREVDAFK-KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred -CcHHHHHHHHHHHHHh-CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 5655677777776654 3456788888999998888888877754
No 17
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.19 E-value=2e-05 Score=76.85 Aligned_cols=116 Identities=12% Similarity=0.160 Sum_probs=84.5
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHH-
Q 021762 159 YAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI- 236 (308)
Q Consensus 159 Y~~IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~A-MrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~- 236 (308)
.-.+|.||...+.. +..+.|.+.|.++. +++|+.| |-+..|+++++++++.++|+++|+|+|+|-. .|...
T Consensus 9 iLLvgHGSRdp~~~-~~~~~La~~l~~~~-~~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlFL~-----~G~Hv~ 81 (335)
T PRK05782 9 IILIGHGSRRETFN-SDMEGMANYLKEKL-GVPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAFLG-----RGNHVF 81 (335)
T ss_pred EEEEecCCCChHHH-HHHHHHHHHHHhcc-CCceEEEEeccCCCCHHHHHHHHHHCCCCEEEEeccccc-----CCcchh
Confidence 33457888877554 44455666665432 4567877 7899999999999999999999999999876 34332
Q ss_pred HHHHHHHHHh-------cc--CCCCCeEEccCCCCChHHHHHHHHHHHHHHhhc
Q 021762 237 RVLQNIFRED-------AY--LSRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (308)
Q Consensus 237 ~~l~ea~~e~-------~~--~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~ 281 (308)
+++.+.+... .. .+.+++.+-++...||.+.+++++++++++...
T Consensus 82 ~DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 82 RDIMGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred hhHHHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 3555554421 11 123567889999999999999999999998644
No 18
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=97.85 E-value=0.00025 Score=56.49 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=60.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHH
Q 021762 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (308)
Q Consensus 163 GggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~A-MrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~e 241 (308)
+.||+.... .+..+.+.+.|.+......|+.| +....|.++++++++.++|+++|+++|+|-.-..-+. +++.+
T Consensus 6 ~hGS~~~~~-~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~----~dip~ 80 (101)
T cd03416 6 GHGSRDPRA-AEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVK----EDIPA 80 (101)
T ss_pred EcCCCCHHH-HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCcccc----ccHHH
Confidence 456666533 34566667777665546678888 5677999999999999999999999999987433332 24444
Q ss_pred HHHHhc-cCCCCCeEEccC
Q 021762 242 IFREDA-YLSRLPVSIIRS 259 (308)
Q Consensus 242 a~~e~~-~~~~i~v~~I~~ 259 (308)
.+++.. ..+++++++.+.
T Consensus 81 ~~~~~~~~~~~~~i~~~~p 99 (101)
T cd03416 81 ALAAARARHPGVRIRYAPP 99 (101)
T ss_pred HHHHHHHHCCCeEEEecCC
Confidence 443321 234455555443
No 19
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=97.80 E-value=0.0003 Score=68.00 Aligned_cols=108 Identities=16% Similarity=0.266 Sum_probs=75.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecC-----CCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHH-
Q 021762 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIR- 237 (308)
Q Consensus 164 ggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~-----~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~- 237 (308)
.|+|-.....+.+++|.+.|+. ..++.+.+=-+.+ .|++++++++|.++|+++|+|+|. -|..-...+..+
T Consensus 205 ~Gd~Y~~~~~~ta~~l~~~l~~-~~~~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~--gFv~D~lETl~ei 281 (322)
T TIGR00109 205 EGDPYPAECEATTRLIAEKLGF-PNEYRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPI--GFTADHLETLYEI 281 (322)
T ss_pred CCCChHHHHHHHHHHHHHHcCC-CCCeEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECC--cccccchhHHHhh
Confidence 5788877888888888888862 1233322222444 999999999999999999999996 333222222211
Q ss_pred --HHHHHHHHhccCCCCC-eEEccCCCCChHHHHHHHHHHHHHH
Q 021762 238 --VLQNIFREDAYLSRLP-VSIIRSWYQREGYVNSMADLIQKEL 278 (308)
Q Consensus 238 --~l~ea~~e~~~~~~i~-v~~I~~~~~~p~YI~a~a~~I~e~l 278 (308)
...+.+.+. +.. +..+++.-++|.||+++++.|.+.+
T Consensus 282 ~~e~~~~~~~~----G~~~~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 282 DEEYREVAEDA----GGDKYQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred hHHHHHHHHHc----CCCeEEECCCCCCCHHHHHHHHHHHHHhh
Confidence 111333332 345 9999999999999999999998865
No 20
>PRK00035 hemH ferrochelatase; Reviewed
Probab=97.73 E-value=0.0005 Score=66.30 Aligned_cols=111 Identities=19% Similarity=0.291 Sum_probs=72.9
Q ss_pred CCCCchhHH---------HHHHHHHHHHHHHhcCCCceeEEeee-------cCCCCHHHHHHHHHHcCCCEEEEeecCcc
Q 021762 163 GGGSPLRKI---------TDEQAQALKTALEAKNLPVNVYVGMR-------YWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 163 GggSPL~~i---------T~~Qa~aL~~~L~~~g~~~~V~~AMr-------Y~~P~I~eal~~L~~~GidrIVvLPLyPq 226 (308)
+.|+|...+ .++.++.|.+.|+.. .-.+.+++. ...|+++++++++.++|+++|+++|.. +
T Consensus 196 ~HG~P~~~~~~gd~Y~~~~~~t~~~l~~~l~~~--~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~-F 272 (333)
T PRK00035 196 AHGLPQRYIDKGDPYQQQCEETARLLAEALGLP--DEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPG-F 272 (333)
T ss_pred cCCCchHHhhcCCChHHHHHHHHHHHHHHhCCC--CCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCe-e
Confidence 555565543 445666777766421 123445544 368999999999999999999999974 2
Q ss_pred ccccchhhHH---HHHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHHhh
Q 021762 227 FSISTTGSSI---RVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGK 280 (308)
Q Consensus 227 yS~sTtgS~~---~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~ 280 (308)
..-...+.. ..+.+.+++.+ ...+..++...++|.++++++++|++.+..
T Consensus 273 -v~D~lEtl~ei~~e~~~~~~~~G---~~~~~~~~~ln~~~~~i~~l~~~v~~~~~~ 325 (333)
T PRK00035 273 -VSDHLETLEEIDIEYREIAEEAG---GEEFRRIPCLNDSPEFIEALADLVRENLQG 325 (333)
T ss_pred -eccchhHHHHHHHHHHHHHHHcC---CceEEECCCCCCCHHHHHHHHHHHHHHhcC
Confidence 221111111 12333333322 125899999999999999999999997643
No 21
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.72 E-value=0.00014 Score=59.47 Aligned_cols=62 Identities=24% Similarity=0.435 Sum_probs=52.1
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCcc
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPq 226 (308)
+|.||+... .+..++|++.|.+++. ..|++|+-=+.|.++++++++.+.|+++|+++|||-.
T Consensus 6 vgHGSr~~~--~~~~~~l~~~l~~~~~-~~v~~~~lE~~P~i~~~l~~l~~~G~~~i~lvPl~L~ 67 (103)
T cd03413 6 MGHGTDHPS--NAVYAALEYVLREEDP-ANVFVGTVEGYPGLDDVLAKLKKAGIKKVTLMPLMLV 67 (103)
T ss_pred EECCCCchh--hhHHHHHHHHHHhcCC-CcEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEehhhe
Confidence 578898876 3777888888876654 6788885559999999999999999999999999876
No 22
>PLN02449 ferrochelatase
Probab=97.69 E-value=0.00065 Score=69.33 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=78.2
Q ss_pred CCchhHHHHHHHHHHHHHHHhcC--CCceeEEeeecC-----CCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHH
Q 021762 165 GSPLRKITDEQAQALKTALEAKN--LPVNVYVGMRYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIR 237 (308)
Q Consensus 165 gSPL~~iT~~Qa~aL~~~L~~~g--~~~~V~~AMrY~-----~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~ 237 (308)
|.|-....++-+++|.+.|+..+ .++.+.+=-|.| .|+++|++++|.++|+++++++|.--. +-...+. .
T Consensus 295 GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFv--SDhiETL-~ 371 (485)
T PLN02449 295 GDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFV--SEHIETL-E 371 (485)
T ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCccc--ccchHHH-H
Confidence 67777888888999999987544 233332222334 899999999999999999999995432 2222222 2
Q ss_pred HHHHHHHHhccCCCC-CeEEccCCCCChHHHHHHHHHHHHHHhh
Q 021762 238 VLQNIFREDAYLSRL-PVSIIRSWYQREGYVNSMADLIQKELGK 280 (308)
Q Consensus 238 ~l~ea~~e~~~~~~i-~v~~I~~~~~~p~YI~a~a~~I~e~l~~ 280 (308)
+++-.+++.....++ .+..|+..-++|.||+++++.|.+.+..
T Consensus 372 EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 372 EIDMEYRELALESGIENWGRVPALGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred HHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHhhc
Confidence 222222222211234 5899999999999999999999999874
No 23
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00036 Score=65.37 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=87.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHH
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~A-MrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ 240 (308)
+|.||++.... ++.+++.+.+.+++....|..| |-+.+|.++++++.+..+|+++|+++|||-....=|+ +++.
T Consensus 8 vgHGsr~p~~~-~~~~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~----~DIP 82 (245)
T COG2138 8 VGHGSRLPRGR-EVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTK----RDIP 82 (245)
T ss_pred eecCCCCccHH-HHHHHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCchhh----cccH
Confidence 47789998775 4455555577777766667777 7899999999999999999999999999988554444 3444
Q ss_pred HHHHHhc-cCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEeCC
Q 021762 241 NIFREDA-YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVSFIVVAYT 295 (308)
Q Consensus 241 ea~~e~~-~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHg 295 (308)
+.+.... ..+ .+.+. ++..+|...+.+.+++.+.....+..- ..+++..||
T Consensus 83 ~~L~~~~~~~~--~~~~~-p~G~~~~~~~~~~~r~~~~~~~~~~~~-~~vv~~~~G 134 (245)
T COG2138 83 AELGLARQAHP--QVDLS-PLGTHPAVLDLLGQRLEDAGADEADDA-ERVVLEPRG 134 (245)
T ss_pred HHHHHhhhcCC--ccccc-ccCCchHHHHHHHHHHHHhcccccccc-ceEEEeccC
Confidence 4443222 112 23333 899999999999999988876543111 125666665
No 24
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=97.50 E-value=0.0011 Score=64.17 Aligned_cols=106 Identities=19% Similarity=0.321 Sum_probs=70.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceeEEee--ecC-----CCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHH
Q 021762 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM--RYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 236 (308)
Q Consensus 164 ggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AM--rY~-----~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~ 236 (308)
.|.|-....++-+++|.++|+-. + +.+|+ +.+ .|++++++++|.++|+++|+|+|. -|..-...+..
T Consensus 201 ~GdpY~~~~~~t~~~i~~~l~~~--~--~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~--gFv~D~lETl~ 274 (316)
T PF00762_consen 201 KGDPYPAQCEETARLIAERLGLP--E--WRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVVPP--GFVSDCLETLY 274 (316)
T ss_dssp CT-SHHHHHHHHHHHHHHHTTTS--S--EEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEEET--T-SSSSHHHHC
T ss_pred CCCChHHHHHHHHHHHHHHcCCC--c--eEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEECC--ccccccHhHHH
Confidence 46788888888888888888432 2 45554 233 699999999999999999999994 33333333322
Q ss_pred H---HHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHH
Q 021762 237 R---VLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKEL 278 (308)
Q Consensus 237 ~---~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l 278 (308)
+ ...+.+++.+. -.+..|++.-++|.||+++++.|.+.|
T Consensus 275 eidie~re~~~~~G~---~~~~~ip~lN~~~~fi~~La~~v~~~~ 316 (316)
T PF00762_consen 275 EIDIEYRELAEEAGG---EEFVRIPCLNDSPEFIEALADLVREHL 316 (316)
T ss_dssp CCCCHHHHHHHHHTC---CEEEE---STT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---ceEEEeCCCCCCHHHHHHHHHHHHhCc
Confidence 1 23444555431 269999999999999999999998875
No 25
>PRK02395 hypothetical protein; Provisional
Probab=97.42 E-value=0.0019 Score=61.18 Aligned_cols=112 Identities=9% Similarity=0.004 Sum_probs=78.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHH-HHHH
Q 021762 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIR-VLQN 241 (308)
Q Consensus 163 GggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~-~l~e 241 (308)
|.||+....+.+...++.+.|.+....-.|++|+--..|.++++++++. .++|+|+|+|-. .|...+ ++.+
T Consensus 142 gHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle~~P~l~~~l~~l~---~~~V~vvP~fL~-----~G~H~~~DIp~ 213 (279)
T PRK02395 142 GHGTERNENSAKAIYYHADRLRERGRFAEVEALFLDEEPEVDDWPDLFE---ADDVVVVPLFIA-----DGFHTQEDIPE 213 (279)
T ss_pred ecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCHHHHHHHhC---CCeEEEEeeecc-----cCcchHhHHHH
Confidence 7788765555555555655565443233677776568999999998874 589999999987 555432 3433
Q ss_pred HHHHhc------cCC----CCCeEEccCCCCChHHHHHHHHHHHHHHhhcC
Q 021762 242 IFREDA------YLS----RLPVSIIRSWYQREGYVNSMADLIQKELGKFQ 282 (308)
Q Consensus 242 a~~e~~------~~~----~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~ 282 (308)
...... ..+ ++.+.+.+....+|.+.+.+++++++++...+
T Consensus 214 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~~ 264 (279)
T PRK02395 214 DMGLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGADVG 264 (279)
T ss_pred HHHHhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcCcc
Confidence 322211 122 45678899999999999999999999987654
No 26
>PRK12435 ferrochelatase; Provisional
Probab=97.32 E-value=0.0033 Score=60.80 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=74.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceeEEeee------cCCCCHHHHHHHHHHc-CCCEEEEeecCccccccchhhHH
Q 021762 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMR------YWYPFTEEAVQQIKRD-RITRLVVLPLYPQFSISTTGSSI 236 (308)
Q Consensus 164 ggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMr------Y~~P~I~eal~~L~~~-GidrIVvLPLyPqyS~sTtgS~~ 236 (308)
.|.|-....++-+++|.++|+.. +|.+.+==| .-.|+++++++++.++ |+++|+|+|.- |.+-...+..
T Consensus 191 ~GDpY~~q~~~t~~~v~~~l~~~--~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpig--FvsDhlETl~ 266 (311)
T PRK12435 191 AGDPYPDQLEETADLIAEQANVE--HYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVG--FVAEHLEVLY 266 (311)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCC--CCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCc--hhhhhHHHHH
Confidence 35677777777888888887532 343333223 2389999999999987 99999999943 3322222222
Q ss_pred H---HHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHHh
Q 021762 237 R---VLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELG 279 (308)
Q Consensus 237 ~---~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~ 279 (308)
+ ...+.+++. ++.+..++..-++|.||+++++.|.+.++
T Consensus 267 Eldie~~e~a~~~----G~~~~r~~~lN~~p~fi~~La~lv~~~~~ 308 (311)
T PRK12435 267 DNDYECKVVTDEI----GAKYYRPEMPNADPLFIDALADVVLKKLK 308 (311)
T ss_pred HHHHHHHHHHHHc----CCcEEeccCCCCCHHHHHHHHHHHHHHHh
Confidence 1 122333432 35677899999999999999999998774
No 27
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=96.75 E-value=0.018 Score=49.16 Aligned_cols=66 Identities=18% Similarity=0.365 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceeEEeee-------cCCCCHHHHHHHHHHcCCCEEEEeec-Cccccccch
Q 021762 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMR-------YWYPFTEEAVQQIKRDRITRLVVLPL-YPQFSISTT 232 (308)
Q Consensus 165 gSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMr-------Y~~P~I~eal~~L~~~GidrIVvLPL-yPqyS~sTt 232 (308)
|.|=...+.+.+++|.+.|+.. ..++..|+. ...|+++++++++.++|+++|+++|. |.....=|.
T Consensus 36 gd~Y~~~~~~~~~~v~~~l~~~--~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl 109 (135)
T cd00419 36 GDPYPDQCEETARLVAERLGLP--FDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSDHLETL 109 (135)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCccccccHHHH
Confidence 5677778888899998888632 223455543 22999999999999999999999998 665443333
No 28
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=96.71 E-value=0.022 Score=53.96 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeEEccCCCC------ChHHHHHHHHH
Q 021762 200 YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQ------REGYVNSMADL 273 (308)
Q Consensus 200 ~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~------~p~YI~a~a~~ 273 (308)
-|+..++|++|.++|+++|+|.||+-- .|.=.+.+.+..++.... -..+.+-++.-. ++.=++++++.
T Consensus 57 i~~~~eaL~~L~~~G~~~V~VQplhii-----pG~Ey~~l~~~v~~~~~~-F~~i~~g~PLL~~~g~~~~~~D~~~va~a 130 (262)
T PF06180_consen 57 IDSPEEALAKLADEGYTEVVVQPLHII-----PGEEYEKLRATVEAYKHD-FKKIVLGRPLLYTMGQENSPEDYEAVAEA 130 (262)
T ss_dssp ---HHHHHHHHHHCT--EEEEEE--SC-----SSHHHHHHHHHHHHHCCC-SSEEEEE--SCSS-----SHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCEEEEeeccee-----CcHhHHHHHHHHHHhhcc-CCeEEecccccccccccCChHHHHHHHHH
Confidence 478899999999999999999998765 555555555555443211 123555555555 45555666666
Q ss_pred HHHHHhhcCCCCceEEEEEeCCCCch
Q 021762 274 IQKELGKFQKPEEVSFIVVAYTFCMV 299 (308)
Q Consensus 274 I~e~l~~~~~~~~~~LLFSaHglP~r 299 (308)
|.+.+... .++..+||..||.|..
T Consensus 131 L~~~~~~~--~~~~a~vlmGHGt~h~ 154 (262)
T PF06180_consen 131 LAEEFPKK--RKDEAVVLMGHGTPHP 154 (262)
T ss_dssp HHCCS-TT---TTEEEEEEE---SCH
T ss_pred HHHhcccc--CCCCEEEEEeCCCCCC
Confidence 55443322 2345799999999864
No 29
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=96.66 E-value=0.027 Score=54.88 Aligned_cols=113 Identities=17% Similarity=0.343 Sum_probs=74.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceeEE----e-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHH
Q 021762 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYV----G-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV 238 (308)
Q Consensus 164 ggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~----A-MrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~ 238 (308)
.|-|-...-++-+++|.+.|+-.-.++.+.+ | ...-.|++.|++++|.+.|+++|+|+|.- |.+-...+ +.+
T Consensus 201 ~GDpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pig--FvsDhlET-L~E 277 (320)
T COG0276 201 EGDPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIG--FVSDHLET-LYE 277 (320)
T ss_pred cCCchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCc--hhhhhHHH-HHH
Confidence 3557666777777778877762212232222 2 23348999999999999999999999953 33222222 222
Q ss_pred HHHHHHHhc-cCCCCCeEEccCCCCChHHHHHHHHHHHHHHh
Q 021762 239 LQNIFREDA-YLSRLPVSIIRSWYQREGYVNSMADLIQKELG 279 (308)
Q Consensus 239 l~ea~~e~~-~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~ 279 (308)
++..+++.. ......+..|+.--++|.||+++++.|++.+.
T Consensus 278 id~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~la~lv~~~~~ 319 (320)
T COG0276 278 IDHEYRELAEEAGGKKYVRIPCLNDSPEFIDALADLVRELLN 319 (320)
T ss_pred HHHHHHHHHHHhCCccEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 332233222 12236799999999999999999999988764
No 30
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=96.42 E-value=0.02 Score=54.23 Aligned_cols=108 Identities=17% Similarity=0.334 Sum_probs=73.4
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHH----
Q 021762 161 AIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI---- 236 (308)
Q Consensus 161 ~IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~---- 236 (308)
-+|.|+|... ..--.+|+..|++.+ .-+|++|.-=+.|.+++++++|++.|++++.++||.-. .|-..
T Consensus 146 lmGHGt~h~a--n~~Y~~l~~~l~~~~-~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlMlV-----AGdHa~nDm 217 (262)
T PF06180_consen 146 LMGHGTPHPA--NAAYSALQAMLKKHG-YPNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLMLV-----AGDHAKNDM 217 (262)
T ss_dssp EEE---SCHH--HHHHHHHHHHHHCCT--TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEESSS-------HHHHCCC
T ss_pred EEeCCCCCCc--cHHHHHHHHHHHhCC-CCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecccc-----cchhhhhhh
Confidence 3488888764 345678888998643 24589998889999999999999999999999998765 44332
Q ss_pred -----HHHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHHh
Q 021762 237 -----RVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELG 279 (308)
Q Consensus 237 -----~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~ 279 (308)
+-|...+++.++. --..+......|.+.+.|.++|+++++
T Consensus 218 aGde~dSWks~L~~~G~~---v~~~l~GLGE~~~i~~ifi~hl~~ai~ 262 (262)
T PF06180_consen 218 AGDEEDSWKSRLEAAGFE---VTCVLKGLGEYPAIQQIFIEHLKEAIE 262 (262)
T ss_dssp CSSSTTSHHHHHHHTT-E---EEE----GGGSHHHHHHHHHHHHHHH-
T ss_pred cCCCcchHHHHHHHCCCE---EEEEeccCcCCHHHHHHHHHHHHHHhC
Confidence 2355556654421 134688999999999999999999873
No 31
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=95.31 E-value=0.091 Score=51.36 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=77.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcC---CCceeEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHH
Q 021762 164 GGSPLRKITDEQAQALKTALEAKN---LPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVL 239 (308)
Q Consensus 164 ggSPL~~iT~~Qa~aL~~~L~~~g---~~~~V~~A-MrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l 239 (308)
.|-|-...-.+=.+.+-++|+.++ .-|+-.+| +-...|.++|+++.|-+.|.+.++++|..-. -..++.+
T Consensus 244 ~GDpY~~Ei~atv~~iMeeL~~~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIaFv------SeHIETL 317 (395)
T KOG1321|consen 244 AGDPYPAEIAATVDLIMEELKYKNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFV------SEHIETL 317 (395)
T ss_pred cCCCcHHHHHHHHHHHHHHhccCCcchhhhhcccCCccccccchHHHHHHHHhhcccceEEEeehhh------hHHHHHH
Confidence 345555555555666667776554 24677777 7788999999999999999999999997542 1222222
Q ss_pred --------HHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhc
Q 021762 240 --------QNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (308)
Q Consensus 240 --------~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~ 281 (308)
+++.++- --.++-+++.-.+|.||+++|+.+.+.|+..
T Consensus 318 ~EiD~ey~e~a~k~g----ve~~~Rv~sln~~p~fI~~lADlV~ehL~s~ 363 (395)
T KOG1321|consen 318 HEIDIEYIEEALKKG----VENWKRVESLNGNPTFIEGLADLVAEHLKSN 363 (395)
T ss_pred HHhhHHHHHHHHHHh----hhhheeccCCCCCccHHHHHHHHHHHhhhhh
Confidence 2222221 0148889999999999999999999998653
No 32
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=92.20 E-value=2 Score=40.16 Aligned_cols=82 Identities=16% Similarity=0.339 Sum_probs=65.4
Q ss_pred eeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhH---------HHHHHHHHHHhccCCCCCeEEccCCC
Q 021762 191 NVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSS---------IRVLQNIFREDAYLSRLPVSIIRSWY 261 (308)
Q Consensus 191 ~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~---------~~~l~ea~~e~~~~~~i~v~~I~~~~ 261 (308)
.|++|--=+.|.++.+++.|++.|++++-++||--. .|-. -+.|.+.++..++. --.++....
T Consensus 169 ~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlv-----AG~Ha~nDMasddedswk~il~~~G~~---v~~~l~GLG 240 (265)
T COG4822 169 NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLV-----AGDHAKNDMASDDEDSWKNILEKNGFK---VEVYLHGLG 240 (265)
T ss_pred ceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEe-----echhhhhhhcccchHHHHHHHHhCCce---eEEEeecCC
Confidence 788888889999999999999999999999998664 3322 13455566654422 155788999
Q ss_pred CChHHHHHHHHHHHHHHhh
Q 021762 262 QREGYVNSMADLIQKELGK 280 (308)
Q Consensus 262 ~~p~YI~a~a~~I~e~l~~ 280 (308)
..|++...+.++|+.+++.
T Consensus 241 E~~~iq~ifi~Hik~aie~ 259 (265)
T COG4822 241 ENPAIQAIFIDHIKDAIER 259 (265)
T ss_pred CcHHHHHHHHHHHHHHHhh
Confidence 9999999999999999875
No 33
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=84.17 E-value=6.2 Score=33.50 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=68.7
Q ss_pred ceEEEEEccCCCCCcCcHHHHHHhhcCCC--CcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHH
Q 021762 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADP--DIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (308)
Q Consensus 99 K~aVLLlNlGgPes~~dV~~FL~n~f~D~--~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Qa 176 (308)
+.-|+|.+.|+ +-=+-=..|...||.+- .|++++.. .+...++.... .+....|+ -|-+..-+.+..
T Consensus 2 ~~~v~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~-----~s~e~~v~aa~----e~~adii~-iSsl~~~~~~~~ 70 (132)
T TIGR00640 2 RPRILVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLF-----QTPEEIARQAV----EADVHVVG-VSSLAGGHLTLV 70 (132)
T ss_pred CCEEEEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCC-----CCHHHHHHHHH----HcCCCEEE-EcCchhhhHHHH
Confidence 34588889998 32222345777777776 57777531 13344544332 34455554 577777888889
Q ss_pred HHHHHHHHhcCC-CceeEEeeecCCCCHHHHHHHHHHcCCCEEE
Q 021762 177 QALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (308)
Q Consensus 177 ~aL~~~L~~~g~-~~~V~~AMrY~~P~I~eal~~L~~~GidrIV 219 (308)
..+.++|++.+. ++.|.+| +.+- ++-.+++++.|+++++
T Consensus 71 ~~~~~~L~~~g~~~i~vivG---G~~~-~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 71 PALRKELDKLGRPDILVVVG---GVIP-PQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHHhcCCCCCEEEEe---CCCC-hHhHHHHHHCCCCEEE
Confidence 999999988775 6777776 3222 4456779999999765
No 34
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=74.81 E-value=54 Score=28.76 Aligned_cols=126 Identities=19% Similarity=0.212 Sum_probs=61.9
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHH--HHHHHHHH-cCCCEEEEeecCccccccchh----hHHH
Q 021762 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKR-DRITRLVVLPLYPQFSISTTG----SSIR 237 (308)
Q Consensus 165 gSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~--eal~~L~~-~GidrIVvLPLyPqyS~sTtg----S~~~ 237 (308)
.+||...-.+||+++.+.|...+.++... |+.|... ++.+.+.+ .|.+ +.+.+ .......| -..+
T Consensus 26 d~pLt~~G~~QA~~l~~~l~~~~~~~~~i----~sS~l~Ra~~TA~~~a~~~~~~-~~~~~---~l~E~~~G~~eg~~~~ 97 (208)
T COG0406 26 DSPLTEEGRAQAEALAERLAARDIGFDAI----YSSPLKRAQQTAEPLAEELGLP-LEVDD---RLREIDFGDWEGLTID 97 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCEE----EECchHHHHHHHHHHHHhcCCC-ceecC---CeeEeecccccCCcHH
Confidence 56999999999999999997543222222 6777655 55555543 3554 33333 22222222 2223
Q ss_pred HHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhcCC--CCceEEEEEeCCCCchhh
Q 021762 238 VLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQK--PEEVSFIVVAYTFCMVPL 301 (308)
Q Consensus 238 ~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~~--~~~~~LLFSaHglP~r~v 301 (308)
.+.+.+.+....- ..-.....+..-+.|.+. .+++..++++... +++ .+++..||.+++.+
T Consensus 98 e~~~~~p~~~~~~-~~~~~~~~~~~gEs~~~~-~~R~~~~~~~~~~~~~~~-~vlvVsHg~~ir~l 160 (208)
T COG0406 98 ELAEEPPEELAAW-LADPYLAPPPGGESLADV-SKRVVAALAELLRSPPGN-NVLVVSHGGVIRAL 160 (208)
T ss_pred HHHHhCHHHHHHH-hcCccccCCCCCCCHHHH-HHHHHHHHHHHHHhcCCC-eEEEEEChHHHHHH
Confidence 3333221110000 000000111112344443 4455555544321 122 58889999998754
No 35
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=70.57 E-value=7.3 Score=37.73 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=33.9
Q ss_pred chhhHHHHHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhcC-CCCceEEEEEeCCCCchhhh
Q 021762 231 TTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQ-KPEEVSFIVVAYTFCMVPLQ 302 (308)
Q Consensus 231 TtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~-~~~~~~LLFSaHglP~r~v~ 302 (308)
.+--+++.+++++++.+ .++-+...-=-++--++.+.+.-.-+++... .|++..+||||||+|....+
T Consensus 15 GV~RAI~ive~al~~~g----~pIyv~~eIVHN~~Vv~~L~~~g~~fve~l~e~p~~~~VIfsAHGVs~~v~~ 83 (294)
T COG0761 15 GVDRAIQIVERALEEYG----APIYVRHEIVHNRYVVDRLREKGAIFVEELDEVPDGATVIFSAHGVSPAVRE 83 (294)
T ss_pred hHHHHHHHHHHHHHHcC----CCeEEEeccccCHHHHHHHHHcCCEeccccccCCCCCEEEEECCCCCHHHHH
Confidence 33445666777777643 2333333333333333333221111222211 24566899999999976543
No 36
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=65.90 E-value=29 Score=34.88 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeec----CCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHh
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRY----WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRED 246 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY----~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~ 246 (308)
++++.+..+-..-=+.|..+ |..|+-| +.|++..+|.+-.+ +++.+-.-+|-+-.-.....-+.|++.+++.
T Consensus 31 id~~~~~~~i~~aie~GiNy-idTA~~Yh~g~sE~~lgkaL~~~~R---ekv~LaTKlp~~~~~~~edm~r~fneqLekl 106 (391)
T COG1453 31 IDEENANETIDYAIEHGINY-IDTAWPYHGGESEEFLGKALKDGYR---EKVKLATKLPSWPVKDREDMERIFNEQLEKL 106 (391)
T ss_pred ccHHHHHHHHHHHHHcCCce-EeecccccCCCchHHHHHHhhhccc---ceEEEEeecCCccccCHHHHHHHHHHHHHHh
Confidence 45555554433322456654 5555555 56666666655443 3334333344322222333334555666654
Q ss_pred ccCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhcCCCCceEE-EEEeCCCCc
Q 021762 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVSF-IVVAYTFCM 298 (308)
Q Consensus 247 ~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~~~~~~~L-LFSaHglP~ 298 (308)
+.. -+.+-.|..--. +.|-.+..--+.+++++.....++.. =||+||.+-
T Consensus 107 ~~D-y~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e 157 (391)
T COG1453 107 GTD-YIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTE 157 (391)
T ss_pred CCc-hhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHH
Confidence 310 011222222222 33333333223444444322233333 399999653
No 37
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=58.78 E-value=60 Score=30.72 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCceeEEeeecCCCCHHHHHHH---HHHcCCCEEEEeecCccccccchhhHHHHHHHHHHH
Q 021762 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQ---IKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (308)
Q Consensus 179 L~~~L~~~g~~~~V~~AMrY~~P~I~eal~~---L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e 245 (308)
++...+..+..+.|..|- +.+.++|+++. .++.|+|-++++| |.|...|-...++.+.+....
T Consensus 63 ~~~~~~~~~~~~~viagv--g~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~~~~~~~l~~~f~~va~a 128 (293)
T PRK04147 63 LEIVAEEAKGKVKLIAQV--GSVNTAEAQELAKYATELGYDAISAVT--PFYYPFSFEEICDYYREIIDS 128 (293)
T ss_pred HHHHHHHhCCCCCEEecC--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCCCCCHHHHHHHHHHHHHh
Confidence 333344333356666654 56788888874 4456999998888 667666555555556555543
No 38
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=58.39 E-value=96 Score=29.06 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=36.6
Q ss_pred CCCceeEEeeecCCCCHHHHHHHHH---HcCCCEEEEeecCccccccchhhHHHHHHHHHH
Q 021762 187 NLPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (308)
Q Consensus 187 g~~~~V~~AMrY~~P~I~eal~~L~---~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~ 244 (308)
+.++.|..| -+..+++++++..+ +.|+|-++++| |+|...|.....+.+.+...
T Consensus 68 ~~~~~vi~g--v~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 68 AGRVPVIAG--VGANSTEEAIELARHAQDAGADAVLVIP--PYYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp TTSSEEEEE--EESSSHHHHHHHHHHHHHTT-SEEEEEE--STSSSCCHHHHHHHHHHHHH
T ss_pred cCceEEEec--CcchhHHHHHHHHHHHhhcCceEEEEec--cccccchhhHHHHHHHHHHh
Confidence 345666666 35668999988544 57999998887 66666666666666666553
No 39
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=57.31 E-value=1.3e+02 Score=26.15 Aligned_cols=99 Identities=8% Similarity=0.056 Sum_probs=57.3
Q ss_pred ecCCCCH--HHHHHHHHHcCCCEEEEeecCcccc-----ccchhhHHHHHHHHHHHhccCCCCCeEEc--cCCCCChHHH
Q 021762 197 RYWYPFT--EEAVQQIKRDRITRLVVLPLYPQFS-----ISTTGSSIRVLQNIFREDAYLSRLPVSII--RSWYQREGYV 267 (308)
Q Consensus 197 rY~~P~I--~eal~~L~~~GidrIVvLPLyPqyS-----~sTtgS~~~~l~ea~~e~~~~~~i~v~~I--~~~~~~p~YI 267 (308)
+|-+|.. ..++++..+. +|+++++|-.-+.. ..|.+-=++++++++++.. .+.+..+ +....+|.--
T Consensus 7 ~F~P~H~GHl~li~~a~~~-~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~~~---~~~v~~~~~~d~~~~~~~w 82 (158)
T cd02167 7 KFAPLHTGHVYLIYKALSQ-VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPDQE---NIVVHTLNEPDIPEYPNGW 82 (158)
T ss_pred ccCCCCHHHHHHHHHHHHH-CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCCCchhH
Confidence 4444444 2455555544 69999999644433 3455555677777776532 2333333 3444455557
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEeCCCCchh
Q 021762 268 NSMADLIQKELGKFQKPEEVSFIVVAYTFCMVP 300 (308)
Q Consensus 268 ~a~a~~I~e~l~~~~~~~~~~LLFSaHglP~r~ 300 (308)
+.|++.|+..+.+... .+..++|+.|-.....
T Consensus 83 ~~w~~~v~~~v~~~~~-~~~~~vf~~~~~~~~~ 114 (158)
T cd02167 83 DIWSNRVKTLIAENTR-CRPDIVFTAEEYEAAF 114 (158)
T ss_pred HHHHHHHHHHHhhhcC-CCCCEEEEccCcchhh
Confidence 7778888888864311 1234688888765444
No 40
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=57.31 E-value=72 Score=29.94 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=50.7
Q ss_pred CCCCHHHHHH---HHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHH
Q 021762 199 WYPFTEEAVQ---QIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275 (308)
Q Consensus 199 ~~P~I~eal~---~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~ 275 (308)
++|+..+..+ ++..+|+|+|+++++....|.+ -.....+.+.+ ++.++++|++.....+.--. +....
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgt--y~~a~~aa~~~------~~~~i~ViDS~~~s~g~g~l-v~~a~ 131 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGT--YNSARLAAKML------PDIKIHVIDSKSVSAGQGLL-VLEAA 131 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-TH--HHHHHHHHHHH------TTTEEEEEE-SS-HHHHHHH-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhH--HHHHHHHHhhc------CcCEEEEEeCCCcchhhhHH-HHHHH
Confidence 6888876655 5556899999999998876642 22222333322 34579999998876653322 22222
Q ss_pred HHHhhcCC-----------CCceEEEEEeCCCCchhhhhcC
Q 021762 276 KELGKFQK-----------PEEVSFIVVAYTFCMVPLQKFG 305 (308)
Q Consensus 276 e~l~~~~~-----------~~~~~LLFSaHglP~r~v~~~~ 305 (308)
+.+++-.. .++..++|+.-. +.++.+.|
T Consensus 132 ~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~--L~~L~kgG 170 (280)
T PF02645_consen 132 KLIEQGKSFEEIVEKLEELRERTRTYFVVDD--LKYLRKGG 170 (280)
T ss_dssp HHHHTT--HHHHHHHHHHHHHTEEEEEEES---SHHHHHCT
T ss_pred HHHHcCCCHHHHHHHHHHHHhhceEEEEech--HHHHHHCC
Confidence 22211000 135678888888 67777776
No 41
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=56.60 E-value=23 Score=30.18 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=54.2
Q ss_pred CCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHHHHHHHHhcCC-CceeEEeeecCCCC--
Q 021762 126 DPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNL-PVNVYVGMRYWYPF-- 202 (308)
Q Consensus 126 D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Qa~aL~~~L~~~g~-~~~V~~AMrY~~P~-- 202 (308)
+=.||++.. ..+...++...+ .++-..|| -|-|+-.|......+.++|.+.|. ++.|.+| +.+.
T Consensus 27 GfeVidLG~-----~v~~e~~v~aa~----~~~adiVg-lS~L~t~~~~~~~~~~~~l~~~gl~~v~vivG---G~~~i~ 93 (128)
T cd02072 27 GFNVVNLGV-----LSPQEEFIDAAI----ETDADAIL-VSSLYGHGEIDCKGLREKCDEAGLKDILLYVG---GNLVVG 93 (128)
T ss_pred CCEEEECCC-----CCCHHHHHHHHH----HcCCCEEE-EeccccCCHHHHHHHHHHHHHCCCCCCeEEEE---CCCCCC
Confidence 336887753 234566655432 22233444 688888888888888889988875 7889988 4443
Q ss_pred ---HHHHHHHHHHcCCCEE
Q 021762 203 ---TEEAVQQIKRDRITRL 218 (308)
Q Consensus 203 ---I~eal~~L~~~GidrI 218 (308)
.++..++|++.|++++
T Consensus 94 ~~d~~~~~~~L~~~Gv~~v 112 (128)
T cd02072 94 KQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred hhhhHHHHHHHHHcCCCEE
Confidence 3566678999999965
No 42
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=52.94 E-value=81 Score=30.11 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=35.5
Q ss_pred HhcCCCceeEEeeecCCCCHHHHHHHHH---HcCCCEEEEeecCccccccchhhHHHHHHHHHH
Q 021762 184 EAKNLPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (308)
Q Consensus 184 ~~~g~~~~V~~AMrY~~P~I~eal~~L~---~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~ 244 (308)
+..+.+++|..|- +. .++++++..+ +.|+|-++++| |.|...+-....+.+.+...
T Consensus 71 ~~~~~~~pvi~gv--~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y~~~~~~~i~~~f~~va~ 129 (303)
T PRK03620 71 ETTAGRVPVIAGA--GG-GTAQAIEYAQAAERAGADGILLLP--PYLTEAPQEGLAAHVEAVCK 129 (303)
T ss_pred HHhCCCCcEEEec--CC-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 3334457777776 34 7888888544 56999988877 66665555545555544444
No 43
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=51.55 E-value=15 Score=33.99 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=36.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCc
Q 021762 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (308)
Q Consensus 163 GggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyP 225 (308)
|=||-++.+|++--..| |+ | ++.|.||..+++|++.|++.|+++.=|-
T Consensus 9 G~gsR~~plT~~tpK~L---lk-------V-----~g~plIErqI~~L~e~gI~dI~IVvGYl 56 (231)
T COG4750 9 GLGSRFVPLTQSTPKSL---LK-------V-----NGEPLIERQIEQLREAGIDDITIVVGYL 56 (231)
T ss_pred ccccccccccccCChHH---HH-------h-----cCcccHHHHHHHHHHCCCceEEEEeeeh
Confidence 55787777776654444 22 1 4899999999999999999999987554
No 44
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=50.20 E-value=2.1e+02 Score=27.09 Aligned_cols=157 Identities=18% Similarity=0.265 Sum_probs=80.9
Q ss_pred CceEEEEEccCCCC------CcCcHHHHHHhhcCCCCccc------------------CChhhhhhhhHHHHHHHhccch
Q 021762 98 DKVGVLLLNLGGPD------TLHDVQPFLFNLFADPDIIR------------------LPRLFRFLQWPLAKLISVVRAP 153 (308)
Q Consensus 98 ~K~aVLLlNlGgPe------s~~dV~~FL~n~f~D~~VI~------------------lP~~~~~~~~~L~~~Ia~~R~~ 153 (308)
+|+|+|++.+||-. |++.++.=+..=|-|.+|.+ +.-+ ...|+++
T Consensus 1 mKKailiVsFGTty~dtre~tIda~e~~va~efpDydvfrAfTS~kIIkkLK~rdgi~~dTP----~~aL~kl------- 69 (265)
T COG4822 1 MKKAILIVSFGTTYNDTRELTIDAIEEKVADEFPDYDVFRAFTSRKIIKKLKERDGIDFDTP----IQALNKL------- 69 (265)
T ss_pred CCceEEEEEcCCccchhHHhhHHHHHHHHHHhCccHHHHHHHhHHHHHHHHHhhcCcccCCH----HHHHHHH-------
Confidence 47899999999976 34555554444444443321 1100 1123332
Q ss_pred hhHHhhcccCCCCchhHHHHHHHHHHHHHHHhcCCCc-eeEEe--eecCCCCHHHHHHHHHHc----CCCEEEEeecCcc
Q 021762 154 KSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPV-NVYVG--MRYWYPFTEEAVQQIKRD----RITRLVVLPLYPQ 226 (308)
Q Consensus 154 ks~~~Y~~IGggSPL~~iT~~Qa~aL~~~L~~~g~~~-~V~~A--MrY~~P~I~eal~~L~~~----GidrIVvLPLyPq 226 (308)
..+.|+..= --||-.|.-..-++|....++...++ .+.+| .-|.+-.-+-.++++++. .-++++||- =|
T Consensus 70 -k~~gy~evi-iQ~lhiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlm--gH 145 (265)
T COG4822 70 -KDQGYEEVI-IQPLHIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIPPLNKDEILVLM--GH 145 (265)
T ss_pred -HHccchhee-eeeeeecCchHHHHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcCCcCcCeEEEEE--ec
Confidence 124565431 12333333334444444433321111 23333 455556667777777765 346666654 34
Q ss_pred ccccchhhHHHHHHHHHHHhccCCCCCeEEccCCCCChHHHHHH
Q 021762 227 FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSM 270 (308)
Q Consensus 227 yS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~ 270 (308)
=|.....++..+++..+.+.++. .+-+..+++|..=...|+.+
T Consensus 146 Gt~h~s~~~YacLd~~~~~~~f~-~v~v~~ve~yP~~d~vi~~l 188 (265)
T COG4822 146 GTDHHSNAAYACLDHVLDEYGFD-NVFVAAVEGYPLVDTVIEYL 188 (265)
T ss_pred CCCccHHHHHHHHHHHHHhcCCC-ceEEEEecCCCcHHHHHHHH
Confidence 34444445556677777776653 34577788888655555443
No 45
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=50.11 E-value=1e+02 Score=28.65 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=34.9
Q ss_pred CCceeEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchhhHHHHHHHHHH
Q 021762 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (308)
Q Consensus 188 ~~~~V~~AMrY~~P~I~eal~~L---~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~ 244 (308)
.++.|.+|- +.++++|+++.. ++.|+|-++++| |.|...+-...++.+.+..+
T Consensus 65 ~~~~vi~gv--~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~~~~~~~~ia~ 120 (281)
T cd00408 65 GRVPVIAGV--GANSTREAIELARHAEEAGADGVLVVP--PYYNKPSQEGIVAHFKAVAD 120 (281)
T ss_pred CCCeEEEec--CCccHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHHHh
Confidence 356666654 567888888844 456999888877 66666555555565555544
No 46
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=50.07 E-value=1.3e+02 Score=30.03 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCCchhHHHHH--HHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHH
Q 021762 164 GGSPLRKITDE--QAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (308)
Q Consensus 164 ggSPL~~iT~~--Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~e 241 (308)
||-||.++.+- -+++|+..+ |.++.+.. +..+.---+|++++|.++|.|+|-+=|- +........+++.+..
T Consensus 86 GGdPl~~ieR~~~~ir~LK~ef---G~~fHiHL-YT~g~~~~~e~l~~L~eAGLDEIRfHp~--~~~~~~~e~~i~~l~~ 159 (353)
T COG2108 86 GGDPLLEIERTVEYIRLLKDEF---GEDFHIHL-YTTGILATEEALKALAEAGLDEIRFHPP--RPGSKSSEKYIENLKI 159 (353)
T ss_pred CCChHHHHHHHHHHHHHHHHhh---ccceeEEE-eeccccCCHHHHHHHHhCCCCeEEecCC--CccccccHHHHHHHHH
Confidence 89999988764 566666555 34555443 2223444589999999999999999886 3334444455555554
Q ss_pred HH
Q 021762 242 IF 243 (308)
Q Consensus 242 a~ 243 (308)
+.
T Consensus 160 A~ 161 (353)
T COG2108 160 AK 161 (353)
T ss_pred HH
Confidence 43
No 47
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=47.17 E-value=1.2e+02 Score=32.34 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=69.6
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHH--HHHHHHHHcCCC--------EEE----Eee--cC
Q 021762 161 AIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKRDRIT--------RLV----VLP--LY 224 (308)
Q Consensus 161 ~IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~--eal~~L~~~Gid--------rIV----vLP--Ly 224 (308)
.++|.|||.+.-++||++|.+.|.... .+ ....-|..|... ++.+.+.+.+++ .++ -+| ..
T Consensus 437 r~~Gd~pLt~~G~~qA~~l~~~l~~~~-~~--~~~~V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 513 (664)
T PTZ00322 437 RIGGNSRLTERGRAYSRALFEYFQKEI-ST--TSFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYF 513 (664)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHhcc-CC--CCcEEEcCCcHHHHHHHHHHHhccccccccccccccccccccccccch
Confidence 356789999999999999999997531 01 111234677744 666656543221 010 011 12
Q ss_pred ccccccchhhH----HHHHHHH----HHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEeCCC
Q 021762 225 PQFSISTTGSS----IRVLQNI----FREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVSFIVVAYTF 296 (308)
Q Consensus 225 PqyS~sTtgS~----~~~l~ea----~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHgl 296 (308)
|......-|.. .+++.+. +..+... +.. ..+..-+.|.+.+..++...+.......+ .+|+..||-
T Consensus 514 ~~L~Ei~fG~wEG~t~~ei~~~~p~~~~~~~~d---~~~--~~~P~GES~~d~~~~R~~~~i~~l~~~~~-~ilvVsHg~ 587 (664)
T PTZ00322 514 PTLDDINHGDCEGQLLSDVRRTMPNTLQSMKAD---PYY--TAWPNGECIHQVFNARLEPHIHDIQASTT-PVLVVSHLH 587 (664)
T ss_pred hhhCcCCCcccCCCCHHHHHHhCcHHHHHHHhC---CCc--CCCCCCcCHHHHHHHHHHHHHHHHHccCC-CEEEEeCcH
Confidence 33333333322 2222221 1111100 011 12344566888776777777765322222 478899999
Q ss_pred Cchhhh
Q 021762 297 CMVPLQ 302 (308)
Q Consensus 297 P~r~v~ 302 (308)
.+|.+-
T Consensus 588 vir~ll 593 (664)
T PTZ00322 588 LLQGLY 593 (664)
T ss_pred HHHHHH
Confidence 888764
No 48
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=47.04 E-value=65 Score=32.15 Aligned_cols=78 Identities=22% Similarity=0.191 Sum_probs=58.7
Q ss_pred eeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeEEccCCCCChHHHHHH
Q 021762 191 NVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSM 270 (308)
Q Consensus 191 ~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~ 270 (308)
-|.+| .+|.|.-.++.+.+.|+++|+++--|-. .|.++.+.+++.. .+.+.++-+.-+.|..-+-=
T Consensus 34 lVpfg---n~pmI~hqieal~nsGi~~I~la~~y~s------~sl~~~~~k~y~~-----~lgVei~~s~eteplgtaGp 99 (371)
T KOG1322|consen 34 LVPFG---NKPMILHQIEALINSGITKIVLATQYNS------ESLNRHLSKAYGK-----ELGVEILASTETEPLGTAGP 99 (371)
T ss_pred ccccC---cchhhHHHHHHHHhCCCcEEEEEEecCc------HHHHHHHHHHhhh-----ccceEEEEEeccCCCcccch
Confidence 36677 7899999999999999999999886643 2234444444421 23488888888888888888
Q ss_pred HHHHHHHHhhcC
Q 021762 271 ADLIQKELGKFQ 282 (308)
Q Consensus 271 a~~I~e~l~~~~ 282 (308)
++.+++.|..+.
T Consensus 100 l~laR~~L~~~~ 111 (371)
T KOG1322|consen 100 LALARDFLWVFE 111 (371)
T ss_pred HHHHHHHhhhcC
Confidence 899999997664
No 49
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=47.01 E-value=61 Score=29.64 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=28.4
Q ss_pred CCchh---HHHHHHHHHHHHHHHhcCCCceeEEeeecCC-------C------------CHHHHHHHHHHcCCCEEEEee
Q 021762 165 GSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWY-------P------------FTEEAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 165 gSPL~---~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~-------P------------~I~eal~~L~~~GidrIVvLP 222 (308)
-=||- .+.+..|+++.+++++ +.|...+.|+. | .+.|+++.|.+.|+++||++-
T Consensus 32 HLPlgtD~~ia~~~a~~~a~~~~~----~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivn 107 (237)
T PF02633_consen 32 HLPLGTDTLIAEAVAERAAERLGE----ALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGFRRIVIVN 107 (237)
T ss_dssp TBBTTHHHHHHHHHHHHHHHHHTH----EEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEE
T ss_pred CccchHHHHHHHHHHHHHHHHCCc----EEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 34554 3444566666666642 44554455543 3 456777777788888888875
No 50
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=46.16 E-value=32 Score=33.34 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 021762 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPL 223 (308)
Q Consensus 179 L~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPL 223 (308)
+.+.+.+.|.+..|.-| .=.+|+++|.++.+.+-+.+++++||=
T Consensus 108 ~~~lf~~~Gv~~vi~gg-qt~nPS~~dl~~Ai~~~~a~~VivLPN 151 (313)
T PF13684_consen 108 LAELFRSLGVDVVISGG-QTMNPSTEDLLNAIEKVGADEVIVLPN 151 (313)
T ss_pred HHHHHHhCCCeEEEeCC-CCCCCCHHHHHHHHHhCCCCeEEEEeC
Confidence 45555555544444332 236899999999999999999999983
No 51
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=45.75 E-value=1.2e+02 Score=28.75 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=35.0
Q ss_pred CCCceeEEeeecCCCCHHHHHHHHH---HcCCCEEEEeecCccccccchhhHHHHHHHHHH
Q 021762 187 NLPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (308)
Q Consensus 187 g~~~~V~~AMrY~~P~I~eal~~L~---~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~ 244 (308)
..++.|.++-- . .++|+++..+ +.|+|.++++| |.|...+-....+.+.+...
T Consensus 72 ~g~~pvi~gv~--~-~t~~ai~~a~~a~~~Gadav~~~p--P~y~~~s~~~i~~~f~~v~~ 127 (296)
T TIGR03249 72 KGKVPVYTGVG--G-NTSDAIEIARLAEKAGADGYLLLP--PYLINGEQEGLYAHVEAVCE 127 (296)
T ss_pred CCCCcEEEecC--c-cHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHh
Confidence 34577777763 3 5888888554 46999888877 66766555555555555544
No 52
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=45.19 E-value=1.3e+02 Score=28.58 Aligned_cols=62 Identities=8% Similarity=0.083 Sum_probs=37.9
Q ss_pred HHHHHhcCCCceeEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchhhHHHHHHHHHHH
Q 021762 180 KTALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (308)
Q Consensus 180 ~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L---~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e 245 (308)
+...+....+++|..|- +...++|+++.. .+.|+|-++++| |.|...+-....+.+.+....
T Consensus 60 ~~~~~~~~g~~pvi~gv--~~~~t~~ai~~a~~A~~~Gad~v~v~p--P~y~~~~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 60 ENAIDQIAGRIPFAPGT--GALNHDETLELTKFAEEAGADAAMVIV--PYYNKPNQEALYDHFAEVADA 124 (294)
T ss_pred HHHHHHhCCCCcEEEEC--CcchHHHHHHHHHHHHHcCCCEEEEcC--ccCCCCCHHHHHHHHHHHHHh
Confidence 33344333356666543 457788887744 346999888888 667666655555656555544
No 53
>PLN02757 sirohydrochlorine ferrochelatase
Probab=44.95 E-value=51 Score=28.74 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=18.9
Q ss_pred CCceEEEEEccCCCCC--cCcHHHHHHhh
Q 021762 97 EDKVGVLLLNLGGPDT--LHDVQPFLFNL 123 (308)
Q Consensus 97 ~~K~aVLLlNlGgPes--~~dV~~FL~n~ 123 (308)
.++.||||+..|+.+. .++++.+...+
T Consensus 11 ~~~~~lllvgHGSrd~~a~~~~~~la~~l 39 (154)
T PLN02757 11 GDKDGVVIVDHGSRRKESNLMLEEFVAMY 39 (154)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4467999999999984 34555555444
No 54
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=44.66 E-value=88 Score=33.98 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=70.1
Q ss_pred CCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcc-cCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHH
Q 021762 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDII-RLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDE 174 (308)
Q Consensus 96 ~~~K~aVLLlNlGgPes~~dV~~FL~n~f~D~~VI-~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~ 174 (308)
.+++.-|+|.++|++. =+-=..|..+||.+-.+- ..+..+ .....++...+ .+....++ -|-+..-+.+
T Consensus 579 ~g~rpkV~LatlG~d~-H~~ra~fv~~~l~~~GfeV~~~~~~----~s~e~~v~aa~----~~~a~ivv-lcs~d~~~~e 648 (714)
T PRK09426 579 EGRRPRILVAKMGQDG-HDRGAKVIATAFADLGFDVDIGPLF----QTPEEAARQAV----ENDVHVVG-VSSLAAGHKT 648 (714)
T ss_pred cCCCceEEEEecCCcc-hhHhHHHHHHHHHhCCeeEecCCCC----CCHHHHHHHHH----HcCCCEEE-EeccchhhHH
Confidence 3445679999999974 333447999999887421 223211 12334444332 23333443 4666667777
Q ss_pred HHHHHHHHHHhcCC-CceeEEeeecCCCCHHHHHHHHHHcCCCEEE
Q 021762 175 QAQALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (308)
Q Consensus 175 Qa~aL~~~L~~~g~-~~~V~~AMrY~~P~I~eal~~L~~~GidrIV 219 (308)
++..+.+.|.+.|. ++.|.+| +.|--++ .+++++.|+|..+
T Consensus 649 ~~~~l~~~Lk~~G~~~v~vl~G---G~~~~~~-~~~l~~aGvD~~i 690 (714)
T PRK09426 649 LVPALIEALKKLGREDIMVVVG---GVIPPQD-YDFLYEAGVAAIF 690 (714)
T ss_pred HHHHHHHHHHhcCCCCcEEEEe---CCCChhh-HHHHHhCCCCEEE
Confidence 89999999998875 5778888 7754333 3788899999654
No 55
>PRK09701 D-allose transporter subunit; Provisional
Probab=44.34 E-value=2.5e+02 Score=26.09 Aligned_cols=10 Identities=20% Similarity=0.159 Sum_probs=4.3
Q ss_pred HHHHHHcCCC
Q 021762 207 VQQIKRDRIT 216 (308)
Q Consensus 207 l~~L~~~Gid 216 (308)
+.++.+.|+-
T Consensus 100 l~~~~~~giP 109 (311)
T PRK09701 100 VARAWKKGIY 109 (311)
T ss_pred HHHHHHCCCc
Confidence 4444444443
No 56
>PRK13463 phosphatase PhoE; Provisional
Probab=43.96 E-value=1.1e+02 Score=27.07 Aligned_cols=42 Identities=21% Similarity=0.174 Sum_probs=29.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHH--HHHHHHHH
Q 021762 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKR 212 (308)
Q Consensus 165 gSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~--eal~~L~~ 212 (308)
.+||...-.+||+++.+.|... ++ -.-|..|... ++.+.+.+
T Consensus 26 d~~Lt~~G~~Qa~~~~~~l~~~--~~----~~i~sSpl~Ra~qTA~~i~~ 69 (203)
T PRK13463 26 NSALTENGILQAKQLGERMKDL--SI----HAIYSSPSERTLHTAELIKG 69 (203)
T ss_pred CCCcCHHHHHHHHHHHHHhcCC--CC----CEEEECCcHHHHHHHHHHHh
Confidence 5899999999999999998632 22 2346788766 66665543
No 57
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=43.88 E-value=1.2e+02 Score=28.70 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLP 222 (308)
+.+..++.+++.|.+.|.++.....+..........+.++++.|++-|++..
T Consensus 150 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~ 201 (347)
T cd06335 150 WGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVG 201 (347)
T ss_pred hhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEe
Confidence 5677888888889887766544444556778889999999999998776654
No 58
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=43.80 E-value=1.4e+02 Score=28.01 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=32.6
Q ss_pred CceeEEeeecCCCCHHHHHHHHH---HcCCCEEEEeecCccccccchhhHHHHHHHHHH
Q 021762 189 PVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (308)
Q Consensus 189 ~~~V~~AMrY~~P~I~eal~~L~---~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~ 244 (308)
++.|..|- +..+++|+++..+ +.|+|-++++| |.|-..+-...++.+.+...
T Consensus 67 ~~~vi~gv--~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 67 RVPVIAGT--GSNATEEAISLTKFAEDVGADGFLVVT--PYYNKPTQEGLYQHFKAIAE 121 (285)
T ss_pred CCeEEEeC--CCccHHHHHHHHHHHHHcCCCEEEEcC--CcCCCCCHHHHHHHHHHHHh
Confidence 56666663 6667888887544 56999888887 55554444444454444433
No 59
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=43.69 E-value=1.4e+02 Score=28.27 Aligned_cols=53 Identities=11% Similarity=-0.031 Sum_probs=34.3
Q ss_pred CCceeEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchhhHHHHHHHHHH
Q 021762 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (308)
Q Consensus 188 ~~~~V~~AMrY~~P~I~eal~~L---~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~ 244 (308)
.++.|.+|- +...++|+++.. ++.|+|-++++| |.|...|-....+.+.+...
T Consensus 69 ~~~pvi~gv--~~~~t~~~i~la~~a~~~Gad~v~v~~--P~y~~~~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 69 DQIALIAQV--GSVNLKEAVELGKYATELGYDCLSAVT--PFYYKFSFPEIKHYYDTIIA 124 (290)
T ss_pred CCCcEEEec--CCCCHHHHHHHHHHHHHhCCCEEEEeC--CcCCCCCHHHHHHHHHHHHh
Confidence 345565553 355778888744 446999888866 77777766666666665554
No 60
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=43.49 E-value=61 Score=26.72 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=47.6
Q ss_pred CcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHHHHHHHHhcCCCce
Q 021762 112 TLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVN 191 (308)
Q Consensus 112 s~~dV~~FL~n~f~D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~ 191 (308)
++++|..||.+.|-|-+ |.++ . -+.+.|+..| |=|-+-+-+.-=-+.|-+.|...
T Consensus 19 ~ee~ia~yL~~~le~~d----~a~i---~-~alg~var~~------------GMsqvA~~aGlsRe~LYkaLS~~----- 73 (100)
T COG3636 19 DEEAIAAYLNAALEEGD----PALI---A-AALGVVARSR------------GMSQVARKAGLSREGLYKALSPG----- 73 (100)
T ss_pred CHHHHHHHHHHHHHcCC----HHHH---H-HHHHHHHHhc------------CHHHHHHHhCccHHHHHHHhCCC-----
Confidence 56799999999999876 5432 1 2334555554 22222222222234555666433
Q ss_pred eEEeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 021762 192 VYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 192 V~~AMrY~~P~I~eal~~L~~~GidrIVvLP 222 (308)
++|.+..+++=++..|++ +.+.|
T Consensus 74 -------GNPtf~Til~V~kAlG~r-l~~~p 96 (100)
T COG3636 74 -------GNPTFDTILAVLKALGLR-LSAQP 96 (100)
T ss_pred -------CCCcHHHHHHHHHHcCce-eeccc
Confidence 689999988888888874 44444
No 61
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=42.76 E-value=2.5e+02 Score=25.79 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEe
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvL 221 (308)
+.++..+.+++.|.+.|.++.-..........+...+.++++.+.|-|++.
T Consensus 146 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~ 196 (336)
T cd06360 146 FGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVF 196 (336)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEe
Confidence 677777888888887775543333334456788899999999999976653
No 62
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=41.53 E-value=91 Score=27.57 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCC-CHHHHHHHHHHcCCCEEEEeecCcc
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYP-FTEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P-~I~eal~~L~~~GidrIVvLPLyPq 226 (308)
+.....+.+++++.+.|.++.+. +...+.+ .--+.++++...|+|-|++.|..|.
T Consensus 12 ~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~ 67 (257)
T PF13407_consen 12 FWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD 67 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTT
T ss_pred HHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH
Confidence 55566677777777665444443 3333333 2236666777789998888887774
No 63
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=41.22 E-value=1.1e+02 Score=29.43 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHHH-HHHHhcCCCceeEEeeecCCCCHHHHHHH---HHHcCCCEEEEeecCccccccchhhHHHHHHHHHHH
Q 021762 172 TDEQAQALK-TALEAKNLPVNVYVGMRYWYPFTEEAVQQ---IKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (308)
Q Consensus 172 T~~Qa~aL~-~~L~~~g~~~~V~~AMrY~~P~I~eal~~---L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e 245 (308)
|.++.+++- ...+..+.++.|.+|- +...++++++. ..+.|+|-++++| |.|-..|....++.+++..+.
T Consensus 59 t~eEr~~v~~~~~~~~~grvpvi~Gv--~~~~t~~ai~~a~~A~~~Gad~vlv~~--P~y~~~~~~~l~~yf~~va~a 132 (309)
T cd00952 59 TWEEKQAFVATVVETVAGRVPVFVGA--TTLNTRDTIARTRALLDLGADGTMLGR--PMWLPLDVDTAVQFYRDVAEA 132 (309)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEe--ccCCHHHHHHHHHHHHHhCCCEEEECC--CcCCCCCHHHHHHHHHHHHHh
Confidence 334333333 3334334456666553 44566777774 3456999888887 445555555555555555443
No 64
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=41.05 E-value=55 Score=27.11 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=45.4
Q ss_pred CCc-hhHHHHHHHHHHHHHHHhcCCCceeEEeeec--------------CCCCHHHHHHHHHHcCCCEEEEeecCccccc
Q 021762 165 GSP-LRKITDEQAQALKTALEAKNLPVNVYVGMRY--------------WYPFTEEAVQQIKRDRITRLVVLPLYPQFSI 229 (308)
Q Consensus 165 gSP-L~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY--------------~~P~I~eal~~L~~~GidrIVvLPLyPqyS~ 229 (308)
||| -...|+..++.+.+.|.+.|.++++.---.| .++.+++.++++.+ .|-+|+. .|.|-.
T Consensus 8 gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~--aD~iI~~--sP~y~~ 83 (152)
T PF03358_consen 8 GSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE--ADGIIFA--SPVYNG 83 (152)
T ss_dssp SSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH--SSEEEEE--EEEBTT
T ss_pred CcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceec--CCeEEEe--ecEEcC
Confidence 576 6789999999999999877644444432222 34455566667764 4544433 466666
Q ss_pred cchhhHHHHHHHH
Q 021762 230 STTGSSIRVLQNI 242 (308)
Q Consensus 230 sTtgS~~~~l~ea 242 (308)
.-++.....++..
T Consensus 84 ~~s~~lK~~lD~~ 96 (152)
T PF03358_consen 84 SVSGQLKNFLDRL 96 (152)
T ss_dssp BE-HHHHHHHHTH
T ss_pred cCChhhhHHHHHh
Confidence 6666554444444
No 65
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.08 E-value=2e+02 Score=27.37 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=66.0
Q ss_pred CceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCcccccc----------chhhHHHHHHHHHHHhccCCCCCeEEcc
Q 021762 189 PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSIS----------TTGSSIRVLQNIFREDAYLSRLPVSIIR 258 (308)
Q Consensus 189 ~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~s----------TtgS~~~~l~ea~~e~~~~~~i~v~~I~ 258 (308)
+-+|.+|+-=.-|...+-.++.++.|.+-|+=+||-|..-.. +.+...+.+++++++......+.=..=.
T Consensus 52 p~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~v~~~~GlnNhmGs 131 (250)
T COG2861 52 PPEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNKVPDAVGLNNHMGS 131 (250)
T ss_pred CccceEEecCCCchhHHHHHHHHhcCCEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhhCccceeehhhhhh
Confidence 567889988888999999999999999999999998864321 2223445555555543322222211222
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCC--CCceEEEEEeCCCCchhhhhcCC
Q 021762 259 SWYQREGYVNSMADLIQKELGKFQK--PEEVSFIVVAYTFCMVPLQKFGM 306 (308)
Q Consensus 259 ~~~~~p~YI~a~a~~I~e~l~~~~~--~~~~~LLFSaHglP~r~v~~~~~ 306 (308)
.|-.++..-+.+- ++|++.+- -|+ --++||++.+.-+..|.
T Consensus 132 ~~tsn~~aM~~~m----~~Lk~r~l~flDs---~T~a~S~a~~iAk~~gV 174 (250)
T COG2861 132 RFTSNEDAMEKLM----EALKERGLYFLDS---GTIANSLAGKIAKEIGV 174 (250)
T ss_pred hhcCcHHHHHHHH----HHHHHCCeEEEcc---cccccchhhhhHhhcCC
Confidence 3444444444433 33333210 011 12789888888777664
No 66
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=39.98 E-value=2.3e+02 Score=27.26 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEE
Q 021762 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (308)
Q Consensus 170 ~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIV 219 (308)
.+.+...+.+++.+.+.|.++.....+..+.+.....+.++++.++|-|+
T Consensus 172 ~~g~~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~ 221 (369)
T PRK15404 172 QYGEGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVY 221 (369)
T ss_pred chhHHHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEE
Confidence 46777888888889888877766666777888999999999999999543
No 67
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=39.13 E-value=3.2e+02 Score=25.38 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 021762 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 170 ~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLP 222 (308)
.+.+.+++.+++.|.+.|.++.....+....+.....+.+++..+.|-|++.-
T Consensus 146 ~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~ 198 (340)
T cd06349 146 DWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILIS 198 (340)
T ss_pred hHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEcc
Confidence 37888889999999877755544444555678889999999999998665543
No 68
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=39.10 E-value=2.4e+02 Score=26.48 Aligned_cols=54 Identities=15% Similarity=-0.018 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHh--cCCCceeEEeeecCC-CCHHHHHHHHHHcCCCEEEEee
Q 021762 169 RKITDEQAQALKTALEA--KNLPVNVYVGMRYWY-PFTEEAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 169 ~~iT~~Qa~aL~~~L~~--~g~~~~V~~AMrY~~-P~I~eal~~L~~~GidrIVvLP 222 (308)
..+.+...+.+++.+.+ .|.++.-...+.... +.....+.++++.++|-|++..
T Consensus 153 ~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~ 209 (342)
T cd06329 153 YSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGN 209 (342)
T ss_pred hHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcc
Confidence 35777888889888987 554443334445556 7788889999999998665544
No 69
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=39.05 E-value=2.3e+02 Score=26.31 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCC
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLS 250 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~ 250 (308)
.-.+.+..+++.+.+. .|.+-+......+-.++.++.|.+.++|-+|+.+.... .+.+.+..+.
T Consensus 15 ff~~ii~gIe~~a~~~--Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~---------~~~l~~~~~~----- 78 (279)
T PF00532_consen 15 FFAEIIRGIEQEAREH--GYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND---------DEELRRLIKS----- 78 (279)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT---------CHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHc--CCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC---------hHHHHHHHHc-----
Confidence 3456777888888776 46777777888888889999999999999998854332 1223333332
Q ss_pred CCCeEEccCCCCCh
Q 021762 251 RLPVSIIRSWYQRE 264 (308)
Q Consensus 251 ~i~v~~I~~~~~~p 264 (308)
++|+.++....+++
T Consensus 79 ~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 79 GIPVVLIDRYIDNP 92 (279)
T ss_dssp TSEEEEESS-SCTT
T ss_pred CCCEEEEEeccCCc
Confidence 36788888886666
No 70
>PLN02417 dihydrodipicolinate synthase
Probab=39.02 E-value=1.2e+02 Score=28.62 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHH---HcCCCEEEEeecCccccccchhhHHHHHHHHHH
Q 021762 175 QAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (308)
Q Consensus 175 Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~---~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~ 244 (308)
+.+-++...+.....++|..| -+.+.++|+++..+ +.|+|-++++| |.|...|-...++.+++..+
T Consensus 56 r~~~~~~~~~~~~~~~pvi~g--v~~~~t~~~i~~a~~a~~~Gadav~~~~--P~y~~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 56 HIMLIGHTVNCFGGKIKVIGN--TGSNSTREAIHATEQGFAVGMHAALHIN--PYYGKTSQEGLIKHFETVLD 124 (280)
T ss_pred HHHHHHHHHHHhCCCCcEEEE--CCCccHHHHHHHHHHHHHcCCCEEEEcC--CccCCCCHHHHHHHHHHHHh
Confidence 333344444433334555544 35677888888544 56999888776 66666555555555555443
No 71
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=38.97 E-value=3e+02 Score=24.89 Aligned_cols=73 Identities=8% Similarity=0.116 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCEEEEeecCcc--ccc----cchhhHHHHHHHHHHHhccC-CCCCeEEccCCC--CChHHHHHHHHHH
Q 021762 204 EEAVQQIKRDRITRLVVLPLYPQ--FSI----STTGSSIRVLQNIFREDAYL-SRLPVSIIRSWY--QREGYVNSMADLI 274 (308)
Q Consensus 204 ~eal~~L~~~GidrIVvLPLyPq--yS~----sTtgS~~~~l~ea~~e~~~~-~~i~v~~I~~~~--~~p~YI~a~a~~I 274 (308)
++.++.+.+.|++.+.+. +... +.. .+....++.+.+.++..... -.+.+.+..-+. .++.|+..+++.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 77 EKGIERALEAGVDEVRIF-DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hhhHHHHHhCCcCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 778888888898765443 2221 111 11111334444443322211 123344455666 8888888887777
Q ss_pred HHH
Q 021762 275 QKE 277 (308)
Q Consensus 275 ~e~ 277 (308)
.+.
T Consensus 156 ~~~ 158 (265)
T cd03174 156 EEA 158 (265)
T ss_pred HHc
Confidence 653
No 72
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=38.18 E-value=45 Score=31.56 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEEeCCCCchh
Q 021762 265 GYVNSMADLIQKELGKFQKPEEVSFIVVAYTFCMVP 300 (308)
Q Consensus 265 ~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHglP~r~ 300 (308)
-|.+++++.|.+..+.++ ..+++..||+|-..
T Consensus 122 PYH~al~~~L~~~~~~~g----~~~liD~HSm~s~~ 153 (263)
T TIGR02017 122 PYHAALQAEIERLRAQHG----YAVLYDAHSIRSVI 153 (263)
T ss_pred HHHHHHHHHHHHHHHhCC----CEEEEEeccCCccC
Confidence 488999999988887775 37999999998743
No 73
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=37.91 E-value=90 Score=26.76 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=25.1
Q ss_pred HHHHHHHHHHh-cCCCceeE--EeeecCCCCHHHHHHHH
Q 021762 175 QAQALKTALEA-KNLPVNVY--VGMRYWYPFTEEAVQQI 210 (308)
Q Consensus 175 Qa~aL~~~L~~-~g~~~~V~--~AMrY~~P~I~eal~~L 210 (308)
-|++|+++|++ .+.+++|. =.|.+..|.+...+...
T Consensus 4 aA~Al~eal~~~~~~~~~v~v~D~~~~~~p~~~~~~~~~ 42 (169)
T PF06925_consen 4 AARALAEALERRRGPDAEVEVVDFLEEASPWLRRLIRKA 42 (169)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEehHHhhChHHHHHHHHH
Confidence 47788888876 45555555 56888888877766654
No 74
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=37.84 E-value=2.9e+02 Score=24.49 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=7.2
Q ss_pred HHHHHHHHHHcCC
Q 021762 203 TEEAVQQIKRDRI 215 (308)
Q Consensus 203 I~eal~~L~~~Gi 215 (308)
+.+.++++.+.|+
T Consensus 71 ~~~~~~~~~~~~i 83 (275)
T cd06320 71 LVPAVERAKKKGI 83 (275)
T ss_pred hHHHHHHHHHCCC
Confidence 4455566655555
No 75
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=37.27 E-value=2.1e+02 Score=23.59 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=29.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHH--HHHHHHHH
Q 021762 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKR 212 (308)
Q Consensus 164 ggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~--eal~~L~~ 212 (308)
...||...-.+||+++.+.|.... .+.+-.-|..|+.. ++.+-+.+
T Consensus 22 ~d~~Lt~~G~~qa~~~a~~l~~~~---~~~~~~i~sSpl~Ra~qTa~~i~~ 69 (155)
T smart00855 22 TDSPLTELGRAQAEALGELLASLG---RLRFDVIYSSPLLRARETAEALAI 69 (155)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcc---CCCCCEEEeCchHHHHHHHHHHHH
Confidence 468999999999999999886431 11122234677765 56555543
No 76
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=36.98 E-value=1.3e+02 Score=28.35 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=33.0
Q ss_pred CCceeEEeeecCCCCHHHHHHH---HHHcCCCEEEEeecCccccccchhhHHHHHHHHHH
Q 021762 188 LPVNVYVGMRYWYPFTEEAVQQ---IKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (308)
Q Consensus 188 ~~~~V~~AMrY~~P~I~eal~~---L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~ 244 (308)
.+++|..+-. . .++++++. .++.|+|-++++| |.|...+-....+.+.+...
T Consensus 68 ~~~pvi~gv~--~-~t~~~i~~a~~a~~~Gad~v~~~p--P~y~~~~~~~i~~~f~~v~~ 122 (289)
T cd00951 68 GRVPVLAGAG--Y-GTATAIAYAQAAEKAGADGILLLP--PYLTEAPQEGLYAHVEAVCK 122 (289)
T ss_pred CCCCEEEecC--C-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHh
Confidence 4567777653 3 78888874 4457999998877 55655554444555554443
No 77
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.93 E-value=3.7e+02 Score=25.37 Aligned_cols=108 Identities=24% Similarity=0.328 Sum_probs=56.2
Q ss_pred ceEEEEEccCCCCCcCcHHHHHHhhc-CCCCcccCChhhhhhhhHHHH--HHHhccchhhHHhhcccCCCCchhHHHHHH
Q 021762 99 KVGVLLLNLGGPDTLHDVQPFLFNLF-ADPDIIRLPRLFRFLQWPLAK--LISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (308)
Q Consensus 99 K~aVLLlNlGgPes~~dV~~FL~n~f-~D~~VI~lP~~~~~~~~~L~~--~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Q 175 (308)
+.-|.-+..|-|+-.. -.+++..+- .+=++|.|.=+| ..|++- .|.. .+.+++.+|--+. ..-++
T Consensus 12 ~~li~yi~aG~P~~~~-~~~~~~~l~~~Gad~iElGiPf---SDP~aDGpvIq~-------a~~~AL~~G~~~~-~~~~~ 79 (258)
T PRK13111 12 KALIPYITAGDPDLET-SLEIIKALVEAGADIIELGIPF---SDPVADGPVIQA-------ASLRALAAGVTLA-DVFEL 79 (258)
T ss_pred ccEEEEEeCCCCCHHH-HHHHHHHHHHCCCCEEEECCCC---CCCcccCHHHHH-------HHHHHHHcCCCHH-HHHHH
Confidence 3455667777776332 223333332 344667652111 234443 2221 2444553332222 12223
Q ss_pred HHHHHHHHHhcCCCceeEEeeecCCC----CHHHHHHHHHHcCCCEEEEeec
Q 021762 176 AQALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPL 223 (308)
Q Consensus 176 a~aL~~~L~~~g~~~~V~~AMrY~~P----~I~eal~~L~~~GidrIVvLPL 223 (308)
.++++ +...+.++ +.|.|++| .+++-++++++.|++-+++--|
T Consensus 80 ~~~~r----~~~~~~p~-vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL 126 (258)
T PRK13111 80 VREIR----EKDPTIPI-VLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDL 126 (258)
T ss_pred HHHHH----hcCCCCCE-EEEecccHHhhcCHHHHHHHHHHcCCcEEEECCC
Confidence 33333 22334555 48999999 5567888999999998888443
No 78
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=36.61 E-value=2.2e+02 Score=26.75 Aligned_cols=77 Identities=8% Similarity=-0.016 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHcCCCEEEE-eecCccccccchh----hHHHHHHHHHHHhccC-CCCCeEEccCCCCChHHHHHHHHH
Q 021762 200 YPFTEEAVQQIKRDRITRLVV-LPLYPQFSISTTG----SSIRVLQNIFREDAYL-SRLPVSIIRSWYQREGYVNSMADL 273 (308)
Q Consensus 200 ~P~I~eal~~L~~~GidrIVv-LPLyPqyS~sTtg----S~~~~l~ea~~e~~~~-~~i~v~~I~~~~~~p~YI~a~a~~ 273 (308)
.|..++ ++...+.|++.|.+ +|..+.+.....+ ..++.+.+..+..+.. -.+.+...+.|..++.++..+++.
T Consensus 71 r~~~~d-i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 71 RCHMDD-ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred cCCHHH-HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 444443 55556679987654 5566655544444 3344444433322111 124577778888888998877777
Q ss_pred HHHH
Q 021762 274 IQKE 277 (308)
Q Consensus 274 I~e~ 277 (308)
+.+.
T Consensus 150 ~~~~ 153 (262)
T cd07948 150 VDKL 153 (262)
T ss_pred HHHc
Confidence 7653
No 79
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=36.14 E-value=95 Score=28.13 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCceeEE--eee--cCCCCHHHHHHHHHHcCCCEEEEeec
Q 021762 179 LKTALEAKNLPVNVYV--GMR--YWYPFTEEAVQQIKRDRITRLVVLPL 223 (308)
Q Consensus 179 L~~~L~~~g~~~~V~~--AMr--Y~~P~I~eal~~L~~~GidrIVvLPL 223 (308)
..+.+.+.|.++.+.+ +++ +...++.+.++.+.+.|++.|.+...
T Consensus 120 ~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 120 AIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred HHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh
Confidence 3334455666665555 567 77888899999999999998886544
No 80
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=35.98 E-value=1.4e+02 Score=24.91 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCCceeEEeeecCCC-----CHHHHHHHHHHcCCCEEEEeecCcc
Q 021762 173 DEQAQALKTALEAKNLPVNVYVGMRYWYP-----FTEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 173 ~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P-----~I~eal~~L~~~GidrIVvLPLyPq 226 (308)
++..++++. +.+.|. +.|.+.+-.+-| .+++.++.+.+.|++.+.+.|+.|.
T Consensus 136 ~~~~~~i~~-~~~~g~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 192 (216)
T smart00729 136 EDVLEAVEK-LREAGP-IKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPR 192 (216)
T ss_pred HHHHHHHHH-HHHhCC-cceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeC
Confidence 344444443 334452 455555555555 4555666677789999999999887
No 81
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=35.97 E-value=79 Score=30.76 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=31.2
Q ss_pred ccCCCCchh---HHHHHHHHHHHHHHHhcCCCceeEEeeecCCC--CHHHHHHHHHHcCCCEE
Q 021762 161 AIGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRL 218 (308)
Q Consensus 161 ~IGggSPL~---~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P--~I~eal~~L~~~GidrI 218 (308)
-+|||.|.. ..-.+..+.|++.++- ..+. .+.+. .+| ..++.++.|++.|+++|
T Consensus 56 ~~GGGtPs~l~~~~l~~ll~~i~~~~~~-~~~~--eitie-~np~~lt~e~l~~l~~~Gv~ri 114 (360)
T TIGR00539 56 FIGGGTPNTLSVEAFERLFESIYQHASL-SDDC--EITTE-ANPELITAEWCKGLKGAGINRL 114 (360)
T ss_pred EeCCCchhcCCHHHHHHHHHHHHHhCCC-CCCC--EEEEE-eCCCCCCHHHHHHHHHcCCCEE
Confidence 359999975 3334445555444421 1122 23322 234 45788999999999876
No 82
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=35.65 E-value=1e+02 Score=24.91 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=37.5
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHH--HHHHHHHHc-CCCEEEEeecC
Q 021762 166 SPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKRD-RITRLVVLPLY 224 (308)
Q Consensus 166 SPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~--eal~~L~~~-GidrIVvLPLy 224 (308)
.||...-.+||+.+.+.|.+.+....+ -|..|+.. ++.+.+.+. + -++.+.|..
T Consensus 24 ~~Lt~~G~~qA~~~~~~l~~~~~~~~~----i~~Sp~~R~~qTA~~~~~~~~-~~~~~~~~l 80 (158)
T PF00300_consen 24 PPLTERGREQARQLGEYLAERDIQIDV----IYSSPLRRCIQTAEIIAEGLG-IEIIVDPRL 80 (158)
T ss_dssp TGBEHHHHHHHHHHHHHHHHTTSSCSE----EEEESSHHHHHHHHHHHHHHT-SEEEEEGGG
T ss_pred ccccHHHHHHHHhhcccccccccCceE----EecCCcchhhhhhchhhcccc-ccccccccc
Confidence 489999999999999999854434433 23577766 666666552 4 457777765
No 83
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.63 E-value=2e+02 Score=27.00 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCc
Q 021762 169 RKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (308)
Q Consensus 169 ~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyP 225 (308)
..+.+..++.+++.+.+.|.++.....+......+...+.++++.++|-|+ +..++
T Consensus 154 ~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~-~~~~~ 209 (362)
T cd06343 154 DDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVV-LATTP 209 (362)
T ss_pred cHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEE-EEcCc
Confidence 457778889999999888776655556666777888999999999998554 44455
No 84
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=35.55 E-value=36 Score=26.35 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeec
Q 021762 199 WYPFTEEAVQQIKRDRITRLVVLPL 223 (308)
Q Consensus 199 ~~P~I~eal~~L~~~GidrIVvLPL 223 (308)
-.--+.+++++|++.|.+.|+++|+
T Consensus 48 ~~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 48 PEKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp ECCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3567889999999999999999997
No 85
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=35.04 E-value=62 Score=27.69 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=25.8
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEeCCCC
Q 021762 260 WYQREGYVNSMADLIQKELGKFQKPEEVSFIVVAYTFC 297 (308)
Q Consensus 260 ~~~~p~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHglP 297 (308)
.+..+.=.+.+.+.|+..++.. +|++ .|++|+||-|
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~-~p~K-pLVlSfHG~t 62 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP-NPRK-PLVLSFHGWT 62 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC-CCCC-CEEEEeecCC
Confidence 4566666777788888887653 4443 5999999976
No 86
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=34.43 E-value=1.7e+02 Score=27.62 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCCceeEEeeecCCCCHHHHHHH---HHHcCCCEEEEeecCccccccchhhHHHHHHHHHHH
Q 021762 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQ---IKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (308)
Q Consensus 177 ~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~---L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e 245 (308)
+.++...+.....+.|.+|- +...++|+++. .++.|+|-++++| |.|...|-....+.+.+..+.
T Consensus 58 ~~~~~~~~~~~~~~~viagv--~~~~~~~ai~~a~~a~~~Gad~v~~~~--P~y~~~~~~~i~~~~~~v~~a 125 (288)
T cd00954 58 QIAEIVAEAAKGKVTLIAHV--GSLNLKESQELAKHAEELGYDAISAIT--PFYYKFSFEEIKDYYREIIAA 125 (288)
T ss_pred HHHHHHHHHhCCCCeEEecc--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCCCCHHHHHHHHHHHHHh
Confidence 33443444333356666553 44678888774 4567999888877 555555545555555555443
No 87
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.09 E-value=4.1e+02 Score=25.12 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcCCCceeEE-------------------eeecC---CCCHHHHHHHHHHcCCCEEEEeecCccccc
Q 021762 172 TDEQAQALKTALEAKNLPVNVYV-------------------GMRYW---YPFTEEAVQQIKRDRITRLVVLPLYPQFSI 229 (308)
Q Consensus 172 T~~Qa~aL~~~L~~~g~~~~V~~-------------------AMrY~---~P~I~eal~~L~~~GidrIVvLPLyPqyS~ 229 (308)
|++....+.+.+.+.+.++.|.+ .|.+. -|..++.+++|++.|++ +++-+.|..+.
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k--~v~~v~P~~~~ 100 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLK--VTLNLHPADGI 100 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCE--EEEEeCCCccc
Confidence 45667777777777765443321 13322 38889999999999997 55666886432
Q ss_pred cchhhHHHHHHHHHHHhccCC-CCCeEEccCCCCChHHHHHHHHHHHHHHhhcC
Q 021762 230 STTGSSIRVLQNIFREDAYLS-RLPVSIIRSWYQREGYVNSMADLIQKELGKFQ 282 (308)
Q Consensus 230 sTtgS~~~~l~ea~~e~~~~~-~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~ 282 (308)
..... ..++..+...... .....++ + +.+|.+.+.|-+.+.+.+...+
T Consensus 101 ~~~~~---~y~~~~~~~~~~~~~~~~~~~-D-~tnp~a~~~w~~~~~~~~~~~G 149 (292)
T cd06595 101 RAHED---QYPEMAKALGVDPATEGPILF-D-LTNPKFMDAYFDNVHRPLEKQG 149 (292)
T ss_pred CCCcH---HHHHHHHhcCCCcccCCeEEe-c-CCCHHHHHHHHHHHHHHHHhcC
Confidence 21111 1222112211110 1112222 3 3579999988888877765443
No 88
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=33.95 E-value=1.5e+02 Score=25.02 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=32.9
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHH--HHHHHHHH-cCCCEEEEee
Q 021762 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKR-DRITRLVVLP 222 (308)
Q Consensus 165 gSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~--eal~~L~~-~GidrIVvLP 222 (308)
..||...-.+||+++.+.|... .+ -.-|..|+.. ++.+.+.+ .|+. +.+.+
T Consensus 21 d~~Lt~~G~~qa~~l~~~l~~~--~~----~~i~sSpl~Ra~qTA~~i~~~~~~~-~~~~~ 74 (177)
T TIGR03162 21 DVPLAEKGAEQAAALREKLADV--PF----DAVYSSPLSRCRELAEILAERRGLP-IIKDP 74 (177)
T ss_pred CCCcChhHHHHHHHHHHHhcCC--CC----CEEEECchHHHHHHHHHHHhhcCCC-ceECC
Confidence 5799999999999999998532 22 2244677765 66666654 2443 44444
No 89
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=33.84 E-value=2.6e+02 Score=22.67 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCC
Q 021762 172 TDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSR 251 (308)
Q Consensus 172 T~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~ 251 (308)
|.-.++++++.++++|.+++|.. .. +.+.-+. .+++| ++-+-|| ..-.++.+++..... +
T Consensus 13 Ss~la~km~~~a~~~gi~~~i~a-~~-----~~e~~~~--~~~~D---vill~PQ-----v~~~~~~i~~~~~~~----~ 72 (99)
T cd05565 13 SGLLANALNKGAKERGVPLEAAA-GA-----YGSHYDM--IPDYD---LVILAPQ-----MASYYDELKKDTDRL----G 72 (99)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEE-ee-----HHHHHHh--ccCCC---EEEEcCh-----HHHHHHHHHHHhhhc----C
Confidence 55678999999999998887763 22 2222222 23566 5556788 444556666555442 4
Q ss_pred CCeEEccC
Q 021762 252 LPVSIIRS 259 (308)
Q Consensus 252 i~v~~I~~ 259 (308)
+|+..|+.
T Consensus 73 ipv~~I~~ 80 (99)
T cd05565 73 IKLVTTTG 80 (99)
T ss_pred CCEEEeCH
Confidence 67888874
No 90
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=33.81 E-value=2.3e+02 Score=26.31 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecC--CCCHHHHHHHHHHcCCCEEEEeecCcc
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYW--YPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~--~P~I~eal~~L~~~GidrIVvLPLyPq 226 (308)
+.+..++.+++.+.+.|..+.....+.-. .......++++++.+. ++|++..++.
T Consensus 172 ~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~-~vvv~~~~~~ 228 (348)
T cd06350 172 YGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTA-RVIVVFGDED 228 (348)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCC-cEEEEEeCcH
Confidence 56777888888888777554333333222 2457788999998888 5666666663
No 91
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=33.61 E-value=2.6e+02 Score=22.74 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCC
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLS 250 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~ 250 (308)
-|.-.++++++.++++|.+++|... .+.++-+.+...++| ++-+-|| ..-..+.+++...+ .
T Consensus 13 STSlla~k~k~~~~e~gi~~~i~a~------~~~e~~~~~~~~~~D---vIll~PQ-----i~~~~~~i~~~~~~----~ 74 (104)
T PRK09590 13 SSSMMAKKTTEYLKEQGKDIEVDAI------TATEGEKAIAAAEYD---LYLVSPQ-----TKMYFKQFEEAGAK----V 74 (104)
T ss_pred HHHHHHHHHHHHHHHCCCceEEEEe------cHHHHHHhhccCCCC---EEEEChH-----HHHHHHHHHHHhhh----c
Confidence 3456788899999999888777653 122332223334577 4445788 43344555554433 2
Q ss_pred CCCeEEccCCCCC--hHHHHHHHHHHHH
Q 021762 251 RLPVSIIRSWYQR--EGYVNSMADLIQK 276 (308)
Q Consensus 251 ~i~v~~I~~~~~~--p~YI~a~a~~I~e 276 (308)
++|+..|+.---- |-=++.++..|.+
T Consensus 75 ~ipv~~I~~~~Y~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 75 GKPVVQIPPQAYIPIPMGIEKMAKLILE 102 (104)
T ss_pred CCCEEEeCHHHcCCCccCHHHHHHHHHh
Confidence 4678888765433 2445666666654
No 92
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=33.13 E-value=2.7e+02 Score=26.51 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCCEEEEeecC--cc--------ccccchhhHHHHHHHHHHHhccCCCCCeEEccCC---CCChHHHHH
Q 021762 203 TEEAVQQIKRDRITRLVVLPLY--PQ--------FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSW---YQREGYVNS 269 (308)
Q Consensus 203 I~eal~~L~~~GidrIVvLPLy--Pq--------yS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~~---~~~p~YI~a 269 (308)
++..|+++.+.|+. +.++|+. |. ...++.....+.++-+.+.....+.+-+.+-.++ .....+.++
T Consensus 90 ~d~~i~~a~~~Gi~-~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~~~~w~~ 168 (289)
T PF13204_consen 90 LDRRIEKANELGIE-AALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDYFDTEKTRADWDA 168 (289)
T ss_dssp HHHHHHHHHHTT-E-EEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSSHHHHHH
T ss_pred HHHHHHHHHHCCCe-EEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcCHHHHHH
Confidence 46778888888885 3466666 33 0233343333333334444443333435666666 667778888
Q ss_pred HHHHHHHHHhhcCCCCceEEEEEeCCCCc
Q 021762 270 MADLIQKELGKFQKPEEVSFIVVAYTFCM 298 (308)
Q Consensus 270 ~a~~I~e~l~~~~~~~~~~LLFSaHglP~ 298 (308)
+++.|++.- |.. |.|+|.-+.
T Consensus 169 ~~~~i~~~d-----p~~---L~T~H~~~~ 189 (289)
T PF13204_consen 169 MARGIKEND-----PYQ---LITIHPCGR 189 (289)
T ss_dssp HHHHHHHH-------SS----EEEEE-BT
T ss_pred HHHHHHhhC-----CCC---cEEEeCCCC
Confidence 888776642 322 779998764
No 93
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.07 E-value=2.2e+02 Score=26.57 Aligned_cols=55 Identities=7% Similarity=0.088 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCcc
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPq 226 (308)
+.+..++.+++.+.+.|.++.-..-+.-..+.+...+.++++.|.|-|+ +..++.
T Consensus 149 ~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi-~~~~~~ 203 (344)
T cd06348 149 FSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIV-ISALAA 203 (344)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEE-ECCcch
Confidence 6678888898888887766544445555788899999999999998544 444543
No 94
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=32.84 E-value=4.2e+02 Score=24.82 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=56.4
Q ss_pred ceEEEEEccCCCCCcCcHHHHHHhhc-CCCCcccCChhhhhhhhHHHH--HHHhccchhhHHhhcccCCCCchhHHHHHH
Q 021762 99 KVGVLLLNLGGPDTLHDVQPFLFNLF-ADPDIIRLPRLFRFLQWPLAK--LISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (308)
Q Consensus 99 K~aVLLlNlGgPes~~dV~~FL~n~f-~D~~VI~lP~~~~~~~~~L~~--~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Q 175 (308)
+--|--+..|-|+-. .-.+++..+- .+=++|.|.=+| ..|++- .|.. ...+++.+|--+.. .-+.
T Consensus 10 ~~li~y~~aG~P~~~-~~~~~~~~l~~~Gad~iElGiPf---sDP~aDGpvIq~-------a~~~al~~G~~~~~-~~~~ 77 (256)
T TIGR00262 10 GAFIPFVTAGDPTLE-TSLEIIKTLIEAGADALELGVPF---SDPLADGPTIQA-------ADLRALRAGMTPEK-CFEL 77 (256)
T ss_pred ceEEEEEeCCCCCHH-HHHHHHHHHHHcCCCEEEECCCC---CCCCCcCHHHHH-------HHHHHHHcCCCHHH-HHHH
Confidence 345667777888532 2233444432 344677542111 234443 2221 23334433322221 1123
Q ss_pred HHHHHHHHHhcCCCceeEEeeecCCC----CHHHHHHHHHHcCCCEEEEeec
Q 021762 176 AQALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPL 223 (308)
Q Consensus 176 a~aL~~~L~~~g~~~~V~~AMrY~~P----~I~eal~~L~~~GidrIVvLPL 223 (308)
.++++ +...+.++. .|-|++| -+++-++++++.|++-+++--|
T Consensus 78 v~~ir----~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl 124 (256)
T TIGR00262 78 LKKVR----QKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL 124 (256)
T ss_pred HHHHH----hcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC
Confidence 33333 222345655 8999999 5567788999999998777665
No 95
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=32.49 E-value=99 Score=30.13 Aligned_cols=56 Identities=30% Similarity=0.422 Sum_probs=33.2
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCC--CHHHHHHHHHHcCCCEE
Q 021762 161 AIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRL 218 (308)
Q Consensus 161 ~IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P--~I~eal~~L~~~GidrI 218 (308)
-+|||.|..- ..++.+.|.+.+...+....+.+.+. .+| ..+|.++.|++.|++++
T Consensus 56 ~~gGGtps~l-~~~~l~~L~~~i~~~~~~~~~eitie-~~p~~~t~e~l~~l~~~G~~rv 113 (374)
T PRK05799 56 FIGGGTPTYL-SLEALEILKETIKKLNKKEDLEFTVE-GNPGTFTEEKLKILKSMGVNRL 113 (374)
T ss_pred EECCCcccCC-CHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHcCCCEE
Confidence 3589999752 33344455555543332222344432 234 56799999999999975
No 96
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=32.30 E-value=94 Score=27.41 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=7.5
Q ss_pred HHHHHHHHHcCCC
Q 021762 204 EEAVQQIKRDRIT 216 (308)
Q Consensus 204 ~eal~~L~~~Gid 216 (308)
.+.++.+.+.|+-
T Consensus 70 ~~~~~~~~~~~ip 82 (270)
T cd01545 70 PELLDLLDEAGVP 82 (270)
T ss_pred cHHHHHHHhcCCC
Confidence 4556666666654
No 97
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=32.18 E-value=2.2e+02 Score=26.60 Aligned_cols=97 Identities=16% Similarity=0.073 Sum_probs=54.1
Q ss_pred ecCCCCHHHHHH---HHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHH
Q 021762 197 RYWYPFTEEAVQ---QIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADL 273 (308)
Q Consensus 197 rY~~P~I~eal~---~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~ 273 (308)
+=++|+..+..+ ++.++| ++|+++++.=..| |++- .+..+.++. ++.++++|++...-.+.-.. +..
T Consensus 58 ~TS~ps~~~~~~~~~~l~~~~-~~vi~i~iSs~lS----gty~-~a~~aa~~~---~~~~i~ViDS~~~s~~~g~~-v~~ 127 (275)
T TIGR00762 58 KTSQPSPGEFLELYEKLLEEG-DEVLSIHLSSGLS----GTYQ-SARQAAEMV---DEAKVTVIDSKSASMGLGLL-VLE 127 (275)
T ss_pred CcCCCCHHHHHHHHHHHHhCC-CeEEEEEcCCchh----HHHH-HHHHHHhhC---CCCCEEEECChHHHHHHHHH-HHH
Confidence 347888776655 555677 7899999865544 3332 122222221 23479999998766654322 222
Q ss_pred HHHHHhhcCC-----------CCceEEEEEeCCCCchhhhhcC
Q 021762 274 IQKELGKFQK-----------PEEVSFIVVAYTFCMVPLQKFG 305 (308)
Q Consensus 274 I~e~l~~~~~-----------~~~~~LLFSaHglP~r~v~~~~ 305 (308)
+.+.+++-.. .++..++|+-.. ++++.+.|
T Consensus 128 a~~~~~~G~s~~eI~~~l~~~~~~~~~~f~v~~--L~~L~~gG 168 (275)
T TIGR00762 128 AAKLAEEGKSLEEILAKLEELRERTKLYFVVDT--LEYLVKGG 168 (275)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECc--HHHHHhcC
Confidence 2332221100 135677888877 66776666
No 98
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=31.75 E-value=1e+02 Score=26.67 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 021762 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 173 ~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLP 222 (308)
.+|.+.++.... .+ ++.-+.+-.. +.... ++.+.+.|+--|.+-.
T Consensus 42 ~~~~~~~~~~~~-~~--~d~iii~~~~-~~~~~-~~~~~~~~ipvv~~~~ 86 (264)
T cd06267 42 EKEREALELLLS-RR--VDGIILAPSR-LDDEL-LEELAALGIPVVLVDR 86 (264)
T ss_pred HHHHHHHHHHHH-cC--cCEEEEecCC-cchHH-HHHHHHcCCCEEEecc
Confidence 445555555443 23 3333333222 22223 7777778876444433
No 99
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=31.56 E-value=1.8e+02 Score=27.02 Aligned_cols=54 Identities=11% Similarity=-0.058 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 021762 169 RKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 169 ~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLP 222 (308)
..+.+..++.+++.+.+.|.++.....+..........+.++++.++|-|++..
T Consensus 145 ~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~ 198 (334)
T cd06327 145 YAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLAN 198 (334)
T ss_pred hHHhHHHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEec
Confidence 356777888888888887765544444555677888999999999998554433
No 100
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=31.56 E-value=49 Score=29.77 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=56.0
Q ss_pred HhhcccC--CCCchhHHHHHHHHHHHHHHHhc---CCCceeEEe--eecCCCC---HHHHHHHHHHcCCCEEEEeecCcc
Q 021762 157 EGYAAIG--GGSPLRKITDEQAQALKTALEAK---NLPVNVYVG--MRYWYPF---TEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 157 ~~Y~~IG--ggSPL~~iT~~Qa~aL~~~L~~~---g~~~~V~~A--MrY~~P~---I~eal~~L~~~GidrIVvLPLyPq 226 (308)
..|+-+- .-||=...+..=|++|.+.|.+. +..+.++++ +.++.|. ..++|+.|.+.|++ |=+|-+
T Consensus 72 ~~y~ITwy~SwSPC~~~~~~Ca~~i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~---v~iM~~- 147 (188)
T PF08210_consen 72 QIYRITWYLSWSPCPESDHCCAEKIAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQ---VEIMSY- 147 (188)
T ss_dssp SEEEEEEEESSS--CC----HHHHHHHHHCCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEE---EEE-SH-
T ss_pred ceEEEEEEEecCCCcchhhHHHHHHHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCE---EEEcCH-
Confidence 4555542 46898885555666666666544 567888888 5677888 89999999999885 223322
Q ss_pred ccccchhhHHHHHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHH
Q 021762 227 FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276 (308)
Q Consensus 227 yS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e 276 (308)
+++....+... ....+ .--.+|-..+...+.+.+.+..
T Consensus 148 ----------~df~~cw~~FV-~~~~~-~~f~pW~~l~~~~~~~~~~l~~ 185 (188)
T PF08210_consen 148 ----------KDFEYCWDNFV-HNGEN-RPFQPWEKLEENSQRLQRQLQN 185 (188)
T ss_dssp ----------HHHHHHHHCCE-TTT-S--S----TTCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHhcc-cccCC-CCCCccchhhHHHHHHHHHHHH
Confidence 12332222211 00000 3445688888887777766654
No 101
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=31.24 E-value=82 Score=32.98 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecC
Q 021762 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (308)
Q Consensus 177 ~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLy 224 (308)
+.+.+.+.+.|.++.|.-+ .=.+|+++|.++.+.+-+.+++++||==
T Consensus 324 ~g~~~~f~~~Ga~~vi~gg-qt~nPS~~dll~ai~~~~a~~V~iLPNn 370 (530)
T TIGR03599 324 EGIAELFKSLGADVVIEGG-QTMNPSTEDILKAIEKVNAKNVFVLPNN 370 (530)
T ss_pred chHHHHHHHCCCCEEEeCC-CCCCCCHHHHHHHHHhCCCCeEEEecCC
Confidence 4466677777766555433 4458999999999999999999999843
No 102
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=30.64 E-value=3e+02 Score=22.78 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeecCccccccchhh----------HHHHHHHHHHHhccCCCCCeEEccCCCCChHH
Q 021762 199 WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGS----------SIRVLQNIFREDAYLSRLPVSIIRSWYQREGY 266 (308)
Q Consensus 199 ~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS----------~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~Y 266 (308)
.-|.+.-+++-+...|+..++++=|||+++.....- -.+.+.+.+++ .-.+|..|.....+
T Consensus 30 ~D~T~~~~~~~a~~~gyg~~~i~NLf~~~~t~p~~l~~~~~~~~~~N~~~i~~~~~~-------~~~vv~AWG~~~~~ 100 (136)
T PF07799_consen 30 DDPTIRRCINFARRWGYGGVIIVNLFPQRSTDPKDLKKAPDPIGPENDEHIREALKE-------ADDVVLAWGNHGKL 100 (136)
T ss_pred CCHHHHHHHHHHhhcCCCeEEEEEecccccCCHHHHHhccCcccHhHHHHHHHHHhc-------cCcEEEEeCCCccc
Confidence 346777777777888999999999999998633321 12334444442 14588899997774
No 103
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=30.37 E-value=88 Score=31.57 Aligned_cols=60 Identities=27% Similarity=0.367 Sum_probs=40.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcC--CCceeEEeeecCCCC--HHHHHHHHHHcCCCEEEEeecCcc
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAKN--LPVNVYVGMRYWYPF--TEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~g--~~~~V~~AMrY~~P~--I~eal~~L~~~GidrIVvLPLyPq 226 (308)
+|||.|-. .+.+|.+.|-+.|.+.- .+..+++.+-. .|. -.|.++.+++.|+.|| .|-.|
T Consensus 93 ~GGGTPsl-L~~~~l~~ll~~l~~~~~~~~~~~EitiE~-nP~~~~~e~~~~l~~~GvNRi---SlGVQ 156 (416)
T COG0635 93 FGGGTPSL-LSPEQLERLLKALRELFNDLDPDAEITIEA-NPGTVEAEKFKALKEAGVNRI---SLGVQ 156 (416)
T ss_pred ECCCcccc-CCHHHHHHHHHHHHHhcccCCCCceEEEEe-CCCCCCHHHHHHHHHcCCCEE---Eeccc
Confidence 39999966 45555555555554432 34457777777 555 5689999999999976 44555
No 104
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=29.75 E-value=4.3e+02 Score=24.31 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHH-HHHHHHHHcCCCEEEEeecC
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE-EAVQQIKRDRITRLVVLPLY 224 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~-eal~~L~~~GidrIVvLPLy 224 (308)
+-....+.+++.+.+.+..+.+.+.-..+.|..+ +.++.+...+++-|++.|.-
T Consensus 13 ~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~ 67 (303)
T cd01539 13 FISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVD 67 (303)
T ss_pred HHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 3445566677777663334555555444555433 67888889999999988754
No 105
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.60 E-value=3.1e+02 Score=26.22 Aligned_cols=54 Identities=19% Similarity=0.001 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCc
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyP 225 (308)
+.+..++.+++.+.+.|.++.....+.-+.......+.++++.|+|-|+ +..++
T Consensus 152 ~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~-~~~~~ 205 (351)
T cd06334 152 FGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVI-LWGWG 205 (351)
T ss_pred cchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEE-Eeccc
Confidence 5566777788888777765544444444556788889999999998444 44444
No 106
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=29.59 E-value=2.1e+02 Score=26.17 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=33.7
Q ss_pred CCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccc
Q 021762 188 LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQF 227 (308)
Q Consensus 188 ~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPqy 227 (308)
.+++|.+|.-=..|+..+..+..++.|.+-++-+||-|.-
T Consensus 19 Lp~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~ 58 (213)
T PF04748_consen 19 LPFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKG 58 (213)
T ss_dssp SSTTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TT
T ss_pred CCCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCC
Confidence 3688999988888999999999999999999999999986
No 107
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=29.42 E-value=3.5e+02 Score=22.85 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHH-cCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHH
Q 021762 199 WYPFTEEAVQQIKR-DRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKE 277 (308)
Q Consensus 199 ~~P~I~eal~~L~~-~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~ 277 (308)
..+...+.+++... .|+|+++.+. -|.+.......+.+.+.+.+++.. ..+-++..-..... ++-++...
T Consensus 42 ~~~~~~~~l~~~l~~~G~d~v~~~~-~~~~~~~~~~~~a~~l~~~~~~~~----~~lVl~~~t~~g~~----la~~lA~~ 112 (164)
T PF01012_consen 42 PAEEAAEALRKALAKYGADKVYHID-DPALAEYDPEAYADALAELIKEEG----PDLVLFGSTSFGRD----LAPRLAAR 112 (164)
T ss_dssp TCCCHHHHHHHHHHSTTESEEEEEE--GGGTTC-HHHHHHHHHHHHHHHT-----SEEEEESSHHHHH----HHHHHHHH
T ss_pred cchhhHHHHhhhhhhcCCcEEEEec-CccccccCHHHHHHHHHHHHHhcC----CCEEEEcCcCCCCc----HHHHHHHH
Confidence 33889999988776 9999999998 555555556666677777777643 24555554443333 45555555
Q ss_pred Hh
Q 021762 278 LG 279 (308)
Q Consensus 278 l~ 279 (308)
|.
T Consensus 113 L~ 114 (164)
T PF01012_consen 113 LG 114 (164)
T ss_dssp HT
T ss_pred hC
Confidence 43
No 108
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=29.22 E-value=1.3e+02 Score=26.48 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=5.1
Q ss_pred HHHHHHHHcCC
Q 021762 205 EAVQQIKRDRI 215 (308)
Q Consensus 205 eal~~L~~~Gi 215 (308)
+.++.+++.|+
T Consensus 69 ~~~~~~~~~~i 79 (259)
T cd01542 69 EHREAIKKLNV 79 (259)
T ss_pred HHHHHHhcCCC
Confidence 44445544443
No 109
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=28.97 E-value=1.3e+02 Score=29.85 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=53.0
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhc-CCCceeEEeeecCCC--CHHHHHHHHHHcCCCEEEEeecCcccc---ccchhhH
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAK-NLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVVLPLYPQFS---ISTTGSS 235 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~-g~~~~V~~AMrY~~P--~I~eal~~L~~~GidrIVvLPLyPqyS---~sTtgS~ 235 (308)
+|||.|..-- .+|.+.|-+.+.+. +.+....+.+-- +| ..+|.++.|++.|+++|-+=.---.-. ...-+-.
T Consensus 68 ~GGGTPs~l~-~~~l~~ll~~i~~~~~~~~~~eitiE~-nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~ 145 (390)
T PRK06582 68 FGGGTPSLMN-PVIVEGIINKISNLAIIDNQTEITLET-NPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHD 145 (390)
T ss_pred ECCCccccCC-HHHHHHHHHHHHHhCCCCCCCEEEEEe-CCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCC
Confidence 4999995422 33333333333321 112112333322 34 347999999999999874322111100 0000011
Q ss_pred HHHHHHHHHHhc-cCCCCCeEEccCCCCChHHHHHHHHHHHHHHh
Q 021762 236 IRVLQNIFREDA-YLSRLPVSIIRSWYQREGYVNSMADLIQKELG 279 (308)
Q Consensus 236 ~~~l~ea~~e~~-~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~ 279 (308)
.+.+.++++..+ ....+.+.+|-....+. .+.|.+.++.+++
T Consensus 146 ~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt--~e~~~~~l~~~~~ 188 (390)
T PRK06582 146 CMQAIKTIEAANTIFPRVSFDLIYARSGQT--LKDWQEELKQAMQ 188 (390)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeecCCCCCC--HHHHHHHHHHHHh
Confidence 123333332221 12345677776666553 3455566666654
No 110
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=28.80 E-value=3.4e+02 Score=25.22 Aligned_cols=52 Identities=12% Similarity=-0.070 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLP 222 (308)
+.+..++..++.+.+.|.++.....+..........+.++++.++|-|++..
T Consensus 144 ~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~~~~~~~d~v~~~~ 195 (333)
T cd06331 144 WPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLSTL 195 (333)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEecCCcccHHHHHHHHHHcCCCEEEEec
Confidence 6677788888888877755544444455567788888888888888655443
No 111
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=28.77 E-value=1.3e+02 Score=26.50 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=8.3
Q ss_pred HHHHHHHHcCCCEEEEee
Q 021762 205 EAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 205 eal~~L~~~GidrIVvLP 222 (308)
+.++.+...++|-+++.|
T Consensus 46 ~~i~~l~~~~vdgiii~~ 63 (260)
T cd06286 46 EYLELLKTKQVDGLILCS 63 (260)
T ss_pred HHHHHHHHcCCCEEEEeC
Confidence 344444444444444444
No 112
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=28.63 E-value=48 Score=21.40 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=17.2
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEE
Q 021762 197 RYWYPFTEEAVQQIKRDRITRLV 219 (308)
Q Consensus 197 rY~~P~I~eal~~L~~~GidrIV 219 (308)
+||-|--++..+++.+.|+|.|.
T Consensus 3 ~~WT~d~~~~~~~~l~~GVDgI~ 25 (30)
T PF13653_consen 3 YFWTPDKPASWRELLDLGVDGIM 25 (30)
T ss_dssp EEET--SHHHHHHHHHHT-SEEE
T ss_pred EEecCCCHHHHHHHHHcCCCEee
Confidence 56888889999999999999774
No 113
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=28.47 E-value=1.6e+02 Score=20.94 Aligned_cols=48 Identities=25% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhcCCC------------ceeEEeeecCCCCHHHHHHHHH-HcCCCEEE
Q 021762 172 TDEQAQALKTALEAKNLP------------VNVYVGMRYWYPFTEEAVQQIK-RDRITRLV 219 (308)
Q Consensus 172 T~~Qa~aL~~~L~~~g~~------------~~V~~AMrY~~P~I~eal~~L~-~~GidrIV 219 (308)
+++.|+++.+.|...|.+ +.|.+|---..--.++++++|+ ..|.+-+|
T Consensus 14 ~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~~~v 74 (76)
T PF05036_consen 14 SEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPDAFV 74 (76)
T ss_dssp -HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS--EE
T ss_pred CHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCCCEE
Confidence 345555555555544433 3445544344444455666666 55655444
No 114
>PRK06934 flavodoxin; Provisional
Probab=28.39 E-value=3.4e+02 Score=25.17 Aligned_cols=27 Identities=15% Similarity=-0.047 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecC
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYW 199 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~ 199 (308)
.|+..|+.|++.++. +=+++.....|.
T Consensus 72 nTk~vAe~Ia~~~ga--Dl~eI~~~~~Y~ 98 (221)
T PRK06934 72 STQYVAQIIQEETGG--DLFRIETVKPYP 98 (221)
T ss_pred HHHHHHHHHHHHHCC--CEEEEEEccccC
Confidence 789999999988852 124555544443
No 115
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=28.31 E-value=3.3e+02 Score=25.30 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=25.5
Q ss_pred CceeEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchhhHHHHHHHHHH
Q 021762 189 PVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (308)
Q Consensus 189 ~~~V~~AMrY~~P~I~eal~~L---~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~ 244 (308)
++.|..|- +.+.++|+++.. ++.|+|.++++| |.|-..|-...++.+.+..+
T Consensus 69 ~~~vi~gv--~~~~~~~~~~~a~~a~~~G~d~v~~~~--P~~~~~~~~~l~~~~~~ia~ 123 (284)
T cd00950 69 RVPVIAGT--GSNNTAEAIELTKRAEKAGADAALVVT--PYYNKPSQEGLYAHFKAIAE 123 (284)
T ss_pred CCcEEecc--CCccHHHHHHHHHHHHHcCCCEEEEcc--cccCCCCHHHHHHHHHHHHh
Confidence 34444432 345666666643 345777666664 44443343444444444333
No 116
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.01 E-value=3e+02 Score=25.42 Aligned_cols=55 Identities=22% Similarity=0.078 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCcc
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPq 226 (308)
+.+..++.+++.+.+.|.++.-...+......+...+.++++.++|-|+ +.+++.
T Consensus 149 ~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~-~~~~~~ 203 (312)
T cd06346 149 YGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALV-VIGYPE 203 (312)
T ss_pred hhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEE-Eecccc
Confidence 6777788888888887766544555666777888999999999998554 455554
No 117
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=27.88 E-value=4.1e+02 Score=25.41 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=45.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchhhHHHHHH
Q 021762 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (308)
Q Consensus 164 ggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L---~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ 240 (308)
|-+|....-+.+ +-++...+..+..++|..| -+...++|+++.. ++.|+|-++++| |.|...+-....+.+.
T Consensus 49 GE~~~Ls~eEr~-~v~~~~v~~~~grvpviaG--~g~~~t~eai~lak~a~~~Gad~il~v~--PyY~k~~~~gl~~hf~ 123 (299)
T COG0329 49 GESPTLTLEERK-EVLEAVVEAVGGRVPVIAG--VGSNSTAEAIELAKHAEKLGADGILVVP--PYYNKPSQEGLYAHFK 123 (299)
T ss_pred ccchhcCHHHHH-HHHHHHHHHHCCCCcEEEe--cCCCcHHHHHHHHHHHHhcCCCEEEEeC--CCCcCCChHHHHHHHH
Confidence 456655433332 2233333433334555544 4788899998844 456999999988 7777777555555555
Q ss_pred HHHHH
Q 021762 241 NIFRE 245 (308)
Q Consensus 241 ea~~e 245 (308)
.....
T Consensus 124 ~ia~a 128 (299)
T COG0329 124 AIAEA 128 (299)
T ss_pred HHHHh
Confidence 55443
No 118
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=27.49 E-value=84 Score=30.27 Aligned_cols=17 Identities=6% Similarity=-0.093 Sum_probs=13.5
Q ss_pred ceEEEEEeCCCCchhhh
Q 021762 286 EVSFIVVAYTFCMVPLQ 302 (308)
Q Consensus 286 ~~~LLFSaHglP~r~v~ 302 (308)
...+||+|||+|....+
T Consensus 69 ~~~ViirAHGv~~~~~~ 85 (281)
T PRK12360 69 GDVVIIRSHGVSKKVYK 85 (281)
T ss_pred CCEEEEeCCCCCHHHHH
Confidence 44799999999987654
No 119
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=27.41 E-value=76 Score=28.57 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHhc-----CCCceeEEe-eecCCCCH-HHHHHHHHHcCCCEEEEeecCccccc
Q 021762 168 LRKITDEQAQALKTALEAK-----NLPVNVYVG-MRYWYPFT-EEAVQQIKRDRITRLVVLPLYPQFSI 229 (308)
Q Consensus 168 L~~iT~~Qa~aL~~~L~~~-----g~~~~V~~A-MrY~~P~I-~eal~~L~~~GidrIVvLPLyPqyS~ 229 (308)
|-++|..+++++.+.|.+. |.+++|.+| -.-+.+.. ..+-++++++|++ +.|.-||-++.
T Consensus 23 Le~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~~~~V~--~titvtpcWcy 89 (171)
T PF07881_consen 23 LEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFKREGVG--VTITVTPCWCY 89 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHHCCTEE--EEEEEESS---
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHHHcCCC--EEEEEEeeeec
Confidence 5567888888888888764 567788877 33343333 3455688889997 66666777654
No 120
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.36 E-value=5.2e+02 Score=24.24 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEe
Q 021762 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (308)
Q Consensus 170 ~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvL 221 (308)
.+.+.+++.++..+.+.|..+.-...+..........+.++++.++|-|++.
T Consensus 155 ~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~ 206 (347)
T cd06340 155 EFGTSVAEAIKKFAKERGFEIVEDISYPANARDLTSEVLKLKAANPDAILPA 206 (347)
T ss_pred hHhHHHHHHHHHHHHHcCCEEEEeeccCCCCcchHHHHHHHHhcCCCEEEEc
Confidence 3677788888888887765543333344456678889999999999855543
No 121
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.10 E-value=1.9e+02 Score=26.98 Aligned_cols=53 Identities=15% Similarity=-0.043 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 021762 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 170 ~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLP 222 (308)
.+.+..++.+++.+.+.|.++.-...+....+.....+.+|++.++|-|++..
T Consensus 155 ~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~ 207 (344)
T cd06345 155 AWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGF 207 (344)
T ss_pred hhhhHHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEee
Confidence 35667788888888877755444444555677889999999999988665543
No 122
>PF05013 FGase: N-formylglutamate amidohydrolase; InterPro: IPR007709 Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilization in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate [].; PDB: 2ODF_G 2Q7S_A.
Probab=26.55 E-value=60 Score=29.48 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEEeCCCCchh
Q 021762 265 GYVNSMADLIQKELGKFQKPEEVSFIVVAYTFCMVP 300 (308)
Q Consensus 265 ~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHglP~r~ 300 (308)
.|.+++.+.|.+..++++ ..++++.||.|-..
T Consensus 114 Pyh~~l~~~l~~~~~~~g----~~illd~HS~~~~~ 145 (222)
T PF05013_consen 114 PYHRALAALLERLRARFG----KVILLDCHSMPPVP 145 (222)
T ss_dssp HHHHHHHHHHHHHHHCCS-----EEEEEEEEE-TCC
T ss_pred HHHHHHHHHHHHHHHhcC----ceEEEEeccCCCcc
Confidence 388999999998888775 37899999988654
No 123
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=26.35 E-value=3.6e+02 Score=23.46 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhccCCCCCeEEcc--C-CCCChHHHHHHHHHHH
Q 021762 199 WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIR--S-WYQREGYVNSMADLIQ 275 (308)
Q Consensus 199 ~~P~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~--~-~~~~p~YI~a~a~~I~ 275 (308)
+...+++-+++|++.|++.|+.+- -|.|. .+.+...+ +.+.-++ + ..-....++.+.+.|.
T Consensus 25 ~~~~~~~~l~~L~~~gI~~Iv~l~-~~~~~-----------~~~~~~~g----i~~~~~p~~D~~~P~~~~i~~~~~~i~ 88 (166)
T PTZ00242 25 SPSNLPLYIKELQRYNVTHLVRVC-GPTYD-----------AELLEKNG----IEVHDWPFDDGAPPPKAVIDNWLRLLD 88 (166)
T ss_pred CcccHHHHHHHHHhCCCeEEEecC-CCCCC-----------HHHHHHCC----CEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 345667778999999999999773 23321 01222221 2222222 1 1124445788888888
Q ss_pred HHHhhcCCCCceEEEEEeCCC
Q 021762 276 KELGKFQKPEEVSFIVVAYTF 296 (308)
Q Consensus 276 e~l~~~~~~~~~~LLFSaHgl 296 (308)
++++.....+...+|=..+|+
T Consensus 89 ~~~~~~~~~g~~V~VHC~aGi 109 (166)
T PTZ00242 89 QEFAKQSTPPETIAVHCVAGL 109 (166)
T ss_pred HHHHhhccCCCeEEEECCCCC
Confidence 887652223445677777775
No 124
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=26.31 E-value=2.2e+02 Score=26.24 Aligned_cols=56 Identities=27% Similarity=0.081 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCc
Q 021762 169 RKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (308)
Q Consensus 169 ~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyP 225 (308)
..+.+.+++.+++.+++.|.++.-...+..+.......+++|++.++|- |++...+
T Consensus 145 ~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~-v~~~~~~ 200 (343)
T PF13458_consen 145 DPYGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDV-VVLAGDP 200 (343)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSE-EEEESTH
T ss_pred chhhhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhcCCCE-EEEeccc
Confidence 5688889999999998887663324556677788889999999999996 4444444
No 125
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=26.29 E-value=2.5e+02 Score=26.93 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeecCCCC-HHHHHHHHHHcCCCEEEEeecCccccccchhhHHHHHHHHHHHhcc
Q 021762 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPF-TEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAY 248 (308)
Q Consensus 170 ~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~-I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~~e~~~ 248 (308)
.+.-+..+.+++.+.+.| +.+.++.....|- ..+.++.+.+.++|-||++|..+. +...+.+.+.
T Consensus 71 ~~~~~i~~gi~~~~~~~g--y~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~----------~~~~~~l~~~-- 136 (333)
T COG1609 71 PFFAEILKGIEEAAREAG--YSLLLANTDDDPEKEREYLETLLQKRVDGLILLGERPN----------DSLLELLAAA-- 136 (333)
T ss_pred chHHHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC----------HHHHHHHHhc--
Confidence 566778888888888764 6667766555444 446778888999999999993322 2233334432
Q ss_pred CCCCCeEEccCCCCCh
Q 021762 249 LSRLPVSIIRSWYQRE 264 (308)
Q Consensus 249 ~~~i~v~~I~~~~~~p 264 (308)
.+|+.+|.....++
T Consensus 137 --~~P~V~i~~~~~~~ 150 (333)
T COG1609 137 --GIPVVVIDRSPPGL 150 (333)
T ss_pred --CCCEEEEeCCCccC
Confidence 35677777655433
No 126
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=26.28 E-value=1.2e+02 Score=29.65 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=9.0
Q ss_pred HHHHHHHHHHcCCC
Q 021762 203 TEEAVQQIKRDRIT 216 (308)
Q Consensus 203 I~eal~~L~~~Gid 216 (308)
-.+.++.|.+.|+.
T Consensus 306 r~~~~~~L~~~gI~ 319 (379)
T PRK11658 306 RDALMEALKERGIG 319 (379)
T ss_pred HHHHHHHHHHCCCC
Confidence 45666677777764
No 127
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=26.16 E-value=3.5e+02 Score=25.54 Aligned_cols=55 Identities=15% Similarity=-0.007 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCc
Q 021762 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (308)
Q Consensus 170 ~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyP 225 (308)
.+.+..++.+++.|++.|.++.....+..+.+.....+.++++.|+|-|+ +..++
T Consensus 144 ~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~v~-~~~~~ 198 (348)
T cd06355 144 VYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVV-STVNG 198 (348)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHhCCCEEE-EeccC
Confidence 45667778888888877766544444555566777888888888888544 34444
No 128
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.90 E-value=1.2e+02 Score=27.15 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCC
Q 021762 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216 (308)
Q Consensus 173 ~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~Gid 216 (308)
+.|.+.+++.+.. +.+.-+-.. -....+.+.++.+.+.|+-
T Consensus 44 ~~~~~~i~~l~~~-~vdgiii~~--~~~~~~~~~l~~~~~~~ip 84 (271)
T cd06312 44 ADMARLIEAAIAA-KPDGIVVTI--PDPDALDPAIKRAVAAGIP 84 (271)
T ss_pred HHHHHHHHHHHHh-CCCEEEEeC--CChHHhHHHHHHHHHCCCe
Confidence 3455555554443 333322222 1122345667777777764
No 129
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.70 E-value=2.2e+02 Score=24.39 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=49.7
Q ss_pred CCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHHHHHHHHhcCC-CceeEEee--ecCCCC
Q 021762 126 DPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNL-PVNVYVGM--RYWYPF 202 (308)
Q Consensus 126 D~~VI~lP~~~~~~~~~L~~~Ia~~R~~ks~~~Y~~IGggSPL~~iT~~Qa~aL~~~L~~~g~-~~~V~~AM--rY~~P~ 202 (308)
+=.|++++. ..+...++...+ .+.-..|| -|-|+-.|......+.++|.+.|. +..|.+|= -...+.
T Consensus 29 GfeVi~LG~-----~v~~e~~v~aa~----~~~adiVg-lS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d 98 (134)
T TIGR01501 29 GFNVVNLGV-----LSPQEEFIKAAI----ETKADAIL-VSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQD 98 (134)
T ss_pred CCEEEECCC-----CCCHHHHHHHHH----HcCCCEEE-EecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhh
Confidence 336777753 234556655432 12223344 577777777778888888888775 45566661 122333
Q ss_pred HHHHHHHHHHcCCCEE
Q 021762 203 TEEAVQQIKRDRITRL 218 (308)
Q Consensus 203 I~eal~~L~~~GidrI 218 (308)
.++..+++++.|++++
T Consensus 99 ~~~~~~~l~~~Gv~~v 114 (134)
T TIGR01501 99 FPDVEKRFKEMGFDRV 114 (134)
T ss_pred hHHHHHHHHHcCCCEE
Confidence 4445667888899865
No 130
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=25.57 E-value=2.5e+02 Score=26.31 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=27.1
Q ss_pred CceeEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchhhHHHHHHHHH
Q 021762 189 PVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 243 (308)
Q Consensus 189 ~~~V~~AMrY~~P~I~eal~~L---~~~GidrIVvLPLyPqyS~sTtgS~~~~l~ea~ 243 (308)
++.|..|- +...++++++.. ++.|+|-++++| |.|...+-...++.+.+..
T Consensus 70 ~~~vi~gv--~~~~~~~~i~~a~~a~~~G~d~v~~~p--P~~~~~~~~~i~~~~~~ia 123 (292)
T PRK03170 70 RVPVIAGT--GSNSTAEAIELTKFAEKAGADGALVVT--PYYNKPTQEGLYQHFKAIA 123 (292)
T ss_pred CCcEEeec--CCchHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHHH
Confidence 34455442 344667777643 345888777765 4454444444444444443
No 131
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=25.32 E-value=5.4e+02 Score=23.71 Aligned_cols=72 Identities=11% Similarity=0.189 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEE-eecCccccccc----hhhHHHHHHHHH---HHhccCCCCCeEEccCCCCChHHHHHHHHHHH
Q 021762 204 EEAVQQIKRDRITRLVV-LPLYPQFSIST----TGSSIRVLQNIF---REDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275 (308)
Q Consensus 204 ~eal~~L~~~GidrIVv-LPLyPqyS~sT----tgS~~~~l~ea~---~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~ 275 (308)
.+.++...+.|++.|-+ +|..+++.... ...+++.+.+.+ ++.+. .+.+........++.|+..+++.+.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~ 149 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL--FVSVGAEDASRADPDFLIEFAEVAQ 149 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--eEEEeeccCCCCCHHHHHHHHHHHH
Confidence 44567777889987655 45666544322 223333333333 33221 2345555666677888887777765
Q ss_pred HH
Q 021762 276 KE 277 (308)
Q Consensus 276 e~ 277 (308)
+.
T Consensus 150 ~~ 151 (259)
T cd07939 150 EA 151 (259)
T ss_pred HC
Confidence 53
No 132
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=25.23 E-value=1.5e+02 Score=28.93 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=30.3
Q ss_pred cCCCCchh---HHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEE
Q 021762 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (308)
Q Consensus 162 IGggSPL~---~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIV 219 (308)
+|||.|.. +.-++..+.|++.+ ..+.++.+-. ...-..+|-++.|++.|+++|-
T Consensus 57 fGGGTPs~l~~~~l~~ll~~i~~~~---~~~~eitiE~-nP~~~~~e~l~~l~~~GvnRiS 113 (350)
T PRK08446 57 IGGGTPSTVSAKFYEPIFEIISPYL---SKDCEITTEA-NPNSATKAWLKGMKNLGVNRIS 113 (350)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhc---CCCceEEEEe-CCCCCCHHHHHHHHHcCCCEEE
Confidence 59999965 22333344444332 1223333321 1222357999999999999874
No 133
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.70 E-value=4.2e+02 Score=22.25 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCCCceeEEeeecCCC-----------------CHHHHHHHHHHcCCCEEEEeec-Cccccccchhh
Q 021762 173 DEQAQALKTALEAKNLPVNVYVGMRYWYP-----------------FTEEAVQQIKRDRITRLVVLPL-YPQFSISTTGS 234 (308)
Q Consensus 173 ~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P-----------------~I~eal~~L~~~GidrIVvLPL-yPqyS~sTtgS 234 (308)
..-++++++.+++.|..+.....+.++.. .+.+.++..+.-|++.+++-+- ++.....+...
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~ 105 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEE 105 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHH
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHH
Confidence 45567778888887766444334333333 3345555566679987666543 24444444544
Q ss_pred HHHHHHH
Q 021762 235 SIRVLQN 241 (308)
Q Consensus 235 ~~~~l~e 241 (308)
..+.+.+
T Consensus 106 ~~~~~~~ 112 (213)
T PF01261_consen 106 NWERLAE 112 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
No 134
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=24.46 E-value=1.4e+02 Score=29.58 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=30.8
Q ss_pred cCCCCchhHHHHH---HHHHHHHHHHhcCCCceeEEeeecCCC--CHHHHHHHHHHcCCCEEEE
Q 021762 162 IGGGSPLRKITDE---QAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVV 220 (308)
Q Consensus 162 IGggSPL~~iT~~---Qa~aL~~~L~~~g~~~~V~~AMrY~~P--~I~eal~~L~~~GidrIVv 220 (308)
||||.|..--++. ..+.|++.++.. .+ ..+.|.- +| ...|-++.|++.|+++|-+
T Consensus 79 ~GGGTPs~L~~~~L~~ll~~i~~~~~~~-~~--~eit~E~-~p~~~~~e~L~~l~~~Gvnrisi 138 (394)
T PRK08898 79 IGGGTPSLLSAAGLDRLLSDVRALLPLD-PD--AEITLEA-NPGTFEAEKFAQFRASGVNRLSI 138 (394)
T ss_pred ECCCCcCCCCHHHHHHHHHHHHHhCCCC-CC--CeEEEEE-CCCCCCHHHHHHHHHcCCCeEEE
Confidence 3999998743433 333333333211 11 2333322 23 3468899999999998754
No 135
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=24.35 E-value=1.2e+02 Score=23.94 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEeCCCCchhh
Q 021762 268 NSMADLIQKELGKFQKPEEVSFIVVAYTFCMVPL 301 (308)
Q Consensus 268 ~a~a~~I~e~l~~~~~~~~~~LLFSaHglP~r~v 301 (308)
...++.|.+++++.+ .+.+.-||+|...+
T Consensus 14 ~~~~~~l~~A~~~~G-----Ff~l~nhGi~~~l~ 42 (116)
T PF14226_consen 14 EEVAEQLRDACEEWG-----FFYLVNHGIPQELI 42 (116)
T ss_dssp HHHHHHHHHHHHHTS-----EEEEESSSSSHHHH
T ss_pred HHHHHHHHHHHHhCC-----EEEEecccccchhh
Confidence 334455555555443 34445666655443
No 136
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=24.33 E-value=1.2e+02 Score=29.50 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=13.5
Q ss_pred ceEEEEEeCCCCchhhh
Q 021762 286 EVSFIVVAYTFCMVPLQ 302 (308)
Q Consensus 286 ~~~LLFSaHglP~r~v~ 302 (308)
+..+||+|||+|....+
T Consensus 66 ~~~ViirAHGv~~~~~~ 82 (298)
T PRK01045 66 GAIVIFSAHGVSPAVRE 82 (298)
T ss_pred CCEEEEeCCCCCHHHHH
Confidence 44799999999976554
No 137
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=24.03 E-value=64 Score=31.16 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHcCCC
Q 021762 202 FTEEAVQQIKRDRIT 216 (308)
Q Consensus 202 ~I~eal~~L~~~Gid 216 (308)
.-++.++.|.+.|+.
T Consensus 308 ~r~~l~~~L~~~gI~ 322 (380)
T TIGR03588 308 TRKEVFEALRAAGIG 322 (380)
T ss_pred CHHHHHHHHHHCCCC
Confidence 355666667766664
No 138
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=23.95 E-value=5e+02 Score=22.80 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCceeEEeeecC--CCCHHHHHHHHHHcCCCEEEE
Q 021762 175 QAQALKTALEAKNLPVNVYVGMRYW--YPFTEEAVQQIKRDRITRLVV 220 (308)
Q Consensus 175 Qa~aL~~~L~~~g~~~~V~~AMrY~--~P~I~eal~~L~~~GidrIVv 220 (308)
+.+.|.+.|.+.|..+.....++.- .+...+..+.+.+.++|-|++
T Consensus 136 ~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivf 183 (249)
T PRK05928 136 GREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIF 183 (249)
T ss_pred CHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEE
Confidence 4556667777766554333333332 234455556665556764443
No 139
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=23.68 E-value=2.4e+02 Score=26.21 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=33.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEE
Q 021762 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (308)
Q Consensus 163 GggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVv 220 (308)
+|+-|......+..+.+.+...+.+. .+....+ ...+|.++.|++.|++.+.+
T Consensus 87 ~g~~~~~~~~~~~~~~i~~~~~~~~i----~~~~~~g-~~~~e~l~~Lk~aG~~~v~i 139 (296)
T TIGR00433 87 SGRGPKDREFMEYVEAMVQIVEEMGL----KTCATLG-LLDPEQAKRLKDAGLDYYNH 139 (296)
T ss_pred ecCCCChHHHHHHHHHHHHHHHhCCC----eEEecCC-CCCHHHHHHHHHcCCCEEEE
Confidence 45566666666677777666544332 2333444 45588999999999987644
No 140
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.65 E-value=3.3e+02 Score=25.74 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCC--------HHHHHHHHHHcCCCEEEE
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPF--------TEEAVQQIKRDRITRLVV 220 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~--------I~eal~~L~~~GidrIVv 220 (308)
...+++....+...+.|..+.+.+.|.++.|+ +.+.++++.+.|+++|.+
T Consensus 111 ~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (274)
T cd07938 111 ESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISL 168 (274)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 33344444444555667778888888877654 446667888889986544
No 141
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.61 E-value=2.8e+02 Score=26.11 Aligned_cols=51 Identities=14% Similarity=-0.078 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEe
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvL 221 (308)
+.+..++.+++.|.+.|.++.-...+..+...+...+.++++.|+|-|++.
T Consensus 150 ~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~ 200 (347)
T cd06336 150 YGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLG 200 (347)
T ss_pred hhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEEEEc
Confidence 677788888888887775544444456678889999999999999855443
No 142
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.55 E-value=6e+02 Score=23.56 Aligned_cols=79 Identities=8% Similarity=-0.013 Sum_probs=38.8
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEe-ecCccccccc----hhhHHHHHHHHHHHhccCCCCCeE--EccCCCCChHHHHH
Q 021762 197 RYWYPFTEEAVQQIKRDRITRLVVL-PLYPQFSIST----TGSSIRVLQNIFREDAYLSRLPVS--IIRSWYQREGYVNS 269 (308)
Q Consensus 197 rY~~P~I~eal~~L~~~GidrIVvL-PLyPqyS~sT----tgS~~~~l~ea~~e~~~~~~i~v~--~I~~~~~~p~YI~a 269 (308)
|.....++.+++.....|++.|-++ |+.+.+.... ....++.+.+.++..+.. ++.+. .......++.|+..
T Consensus 69 r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~~~~~~~~~~~~~~~~ 147 (268)
T cd07940 69 RAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSH-GLDVEFSAEDATRTDLDFLIE 147 (268)
T ss_pred cCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCeEEEeeecCCCCCHHHHHH
Confidence 4444334333333222238877665 6666654332 233344444444322211 23333 33445567888888
Q ss_pred HHHHHHH
Q 021762 270 MADLIQK 276 (308)
Q Consensus 270 ~a~~I~e 276 (308)
+++.+.+
T Consensus 148 ~~~~~~~ 154 (268)
T cd07940 148 VVEAAIE 154 (268)
T ss_pred HHHHHHH
Confidence 7777765
No 143
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=23.43 E-value=1.4e+02 Score=28.80 Aligned_cols=17 Identities=12% Similarity=-0.144 Sum_probs=13.6
Q ss_pred ceEEEEEeCCCCchhhh
Q 021762 286 EVSFIVVAYTFCMVPLQ 302 (308)
Q Consensus 286 ~~~LLFSaHglP~r~v~ 302 (308)
+..+||+|||+|....+
T Consensus 66 ~~~ViirAHGv~~~~~~ 82 (280)
T TIGR00216 66 GDTVIIRAHGVPPEVRE 82 (280)
T ss_pred CCEEEEeCCCCCHHHHH
Confidence 44799999999987654
No 144
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=23.40 E-value=1.9e+02 Score=28.39 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCC--HHHHHHHHHHcCCCEEE
Q 021762 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPF--TEEAVQQIKRDRITRLV 219 (308)
Q Consensus 163 GggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~--I~eal~~L~~~GidrIV 219 (308)
|||+|..- ..++.+.|-+.+.+. ...++.+ ..+|. .++.++.|++.|++++-
T Consensus 65 GGGTPs~l-~~~~l~~ll~~i~~~-~~~eit~---E~~P~~~~~~~l~~l~~~G~nris 118 (370)
T PRK06294 65 GGGTPSLV-PPALIQDILKTLEAP-HATEITL---EANPENLSESYIRALALTGINRIS 118 (370)
T ss_pred CCCccccC-CHHHHHHHHHHHHhC-CCCeEEE---EeCCCCCCHHHHHHHHHCCCCEEE
Confidence 99999663 333444444445332 2233333 23443 37899999999998773
No 145
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=23.26 E-value=1.6e+02 Score=28.62 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHcCCC
Q 021762 202 FTEEAVQQIKRDRIT 216 (308)
Q Consensus 202 ~I~eal~~L~~~Gid 216 (308)
.-.+.++.|.+.|+.
T Consensus 301 ~r~~l~~~L~~~gI~ 315 (375)
T PRK11706 301 DRSALINFLKEAGIM 315 (375)
T ss_pred CHHHHHHHHHHCCCC
Confidence 345666666666664
No 146
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=23.18 E-value=87 Score=25.42 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeec
Q 021762 199 WYPFTEEAVQQIKRDRITRLVVLPL 223 (308)
Q Consensus 199 ~~P~I~eal~~L~~~GidrIVvLPL 223 (308)
-..-+.+++++|++.|.+.|+|+|+
T Consensus 72 ~~~~v~~~~~~Lk~~GA~~Ilv~~i 96 (100)
T TIGR03455 72 DEKVVNELIDKLKAAGARDILVLPI 96 (100)
T ss_pred cHHHHHHHHHHHHHcCCCeEEEech
Confidence 3456779999999999999999986
No 147
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=23.18 E-value=31 Score=30.38 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=23.5
Q ss_pred EEEccCCCC------C--cCcHHHHHHhhcCCCCc
Q 021762 103 LLLNLGGPD------T--LHDVQPFLFNLFADPDI 129 (308)
Q Consensus 103 LLlNlGgPe------s--~~dV~~FL~n~f~D~~V 129 (308)
+++|-|||+ | -+||++=|..++.|+.|
T Consensus 22 ~~~n~~GpeFYl~~~S~sW~eVEdkLraIl~d~~V 56 (152)
T PF15186_consen 22 MLRNGGGPEFYLENRSLSWEEVEDKLRAILEDSQV 56 (152)
T ss_pred HHhcCCCchHHHHhccCCHHHHHHHHHHHHhCccC
Confidence 578999999 2 36999999999999987
No 148
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.15 E-value=2.7e+02 Score=25.50 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEE
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVv 220 (308)
+.+...+.+++.+.+.|..+.-...+..+.......++++++.++|-|++
T Consensus 148 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~ 197 (334)
T cd06347 148 YSKGLAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFL 197 (334)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEE
Confidence 34455677777777766544333445566778888899999988885544
No 149
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.04 E-value=1.6e+02 Score=25.97 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEE
Q 021762 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRL 218 (308)
Q Consensus 173 ~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrI 218 (308)
+.|.+.+++.+. .+.+.-+..+ -..+.+.+.++++.+.|+.-|
T Consensus 42 ~~~~~~~~~~~~-~~vdgiii~~--~~~~~~~~~~~~~~~~~ipvV 84 (267)
T cd06322 42 NKQLSDVEDFIT-KKVDAIVLSP--VDSKGIRAAIAKAKKAGIPVI 84 (267)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcC--CChhhhHHHHHHHHHCCCCEE
Confidence 345555665553 3444333322 122334567788877777633
No 150
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.96 E-value=3.1e+02 Score=20.14 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLP 222 (308)
...+++.++.+.|...|..+.+. +....+...++.....|+.-++++-
T Consensus 12 ~~~~~a~~~~~~Lr~~g~~v~~d----~~~~~~~~~~~~a~~~g~~~~iiig 59 (91)
T cd00860 12 EHLDYAKEVAKKLSDAGIRVEVD----LRNEKLGKKIREAQLQKIPYILVVG 59 (91)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEE----CCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 45567778888887665433332 3456888999988888998777765
No 151
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=22.87 E-value=6.7e+02 Score=23.88 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=62.9
Q ss_pred eEEEEEccCCCCC--cCcHHHHHHhhcCCCCcccC-----ChhhhhhhhHHHHHHHhccchhhHH-hhcccC--CCCc--
Q 021762 100 VGVLLLNLGGPDT--LHDVQPFLFNLFADPDIIRL-----PRLFRFLQWPLAKLISVVRAPKSKE-GYAAIG--GGSP-- 167 (308)
Q Consensus 100 ~aVLLlNlGgPes--~~dV~~FL~n~f~D~~VI~l-----P~~~~~~~~~L~~~Ia~~R~~ks~~-~Y~~IG--ggSP-- 167 (308)
.-.+.+.=|+|.- .+.++..+..+...+.++.+ |..+ ..-....+..++ +..- .+-.+| -+++
T Consensus 78 ~~~iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l---~~e~l~~L~~l~--~~G~~~~i~lGlQS~~d~~ 152 (302)
T TIGR01212 78 KFIAYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV---PDEVLDLLAEYV--ERGYEVWVELGLQTAHDKT 152 (302)
T ss_pred EEEEEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC---CHHHHHHHHHhh--hCCceEEEEEccCcCCHHH
Confidence 4456777777773 46777777777766666543 3321 000111222111 0000 122344 2222
Q ss_pred hhH----HHHHHHHHHHHHHHhcCCCceeEEeeecCCCC-----HHHHHHHHHHcCCCEEEEeecCcc
Q 021762 168 LRK----ITDEQAQALKTALEAKNLPVNVYVGMRYWYPF-----TEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 168 L~~----iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~-----I~eal~~L~~~GidrIVvLPLyPq 226 (308)
|.. +|.++....-+.+.+.| +.|...+-++-|. +.+.++.+.+.+++.+-+.||+|.
T Consensus 153 L~~i~Rg~t~~~~~~ai~~l~~~g--i~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~ 218 (302)
T TIGR01212 153 LKKINRGHDFACYVDAVKRARKRG--IKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVV 218 (302)
T ss_pred HHHHcCcChHHHHHHHHHHHHHcC--CEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEec
Confidence 222 23333333334455554 4566667777764 334555666789999999999997
No 152
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=22.83 E-value=4.9e+02 Score=22.67 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=29.6
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHH--HHHHHHHH
Q 021762 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKR 212 (308)
Q Consensus 165 gSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~--eal~~L~~ 212 (308)
.+||.+.-.+||+++.+.|... ++. --|..|... ++.+-+.+
T Consensus 24 d~pLt~~G~~Qa~~~~~~l~~~--~~~----~i~sSpl~Ra~qTA~~i~~ 67 (199)
T PRK15004 24 PTPLTARGIEQAQNLHTLLRDV--PFD----LVLCSELERAQHTARLVLS 67 (199)
T ss_pred CCCcCHHHHHHHHHHHHHHhCC--CCC----EEEECchHHHHHHHHHHHh
Confidence 5799999999999999999632 222 236778765 66666654
No 153
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=22.75 E-value=1.8e+02 Score=27.92 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCceeEEe--eecCCCCHHHHHHHHHHcCCCEEEEeecCccc
Q 021762 176 AQALKTALEAKNLPVNVYVG--MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQF 227 (308)
Q Consensus 176 a~aL~~~L~~~g~~~~V~~A--MrY~~P~I~eal~~L~~~GidrIVvLPLyPqy 227 (308)
.++++ .|.+.|..+.|..- .+...-.+++.++.+.+.|++.+.+.|.||..
T Consensus 152 l~~I~-~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 152 VEAIR-EAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHH-HHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 34444 33445655544332 23555678888889999999999999999864
No 154
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=22.67 E-value=4.3e+02 Score=25.27 Aligned_cols=75 Identities=7% Similarity=0.076 Sum_probs=45.4
Q ss_pred CccccccchhhHHHHHHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEeCCCCchh
Q 021762 224 YPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVSFIVVAYTFCMVP 300 (308)
Q Consensus 224 yPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~~~~~~~LLFSaHglP~r~ 300 (308)
.|..+.-.....++.+.+.+++....-.-.+..+.+...+|.+.+.+++.+.+.+.... . ++.+=..+.|+|+-+
T Consensus 70 ~p~~~~~~~~~~~~~l~~~l~~~~rilpgg~~~~s~ll~~P~~l~~ig~~la~~~~~~~-i-D~VvgvetkGIpLA~ 144 (268)
T TIGR01743 70 IPKMSQAEAEEFVEELCQSLSEPERILPGGYLYLTDILGKPSILSKIGKILASVFAERE-I-DAVMTVATKGIPLAY 144 (268)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHCCCcccCCeEEechhhcCHHHHHHHHHHHHHHhcCCC-C-CEEEEEccchHHHHH
Confidence 45656555556666666666554321111366777889999999999888877765321 2 233334566766543
No 155
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=22.63 E-value=4.7e+02 Score=22.06 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=41.7
Q ss_pred eecCCCCHHHHHHHHHHcCCCEEE-EeecCccccccchhhHHHHHHHHHHHhccCCCCCeEEccCCCCC
Q 021762 196 MRYWYPFTEEAVQQIKRDRITRLV-VLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQR 263 (308)
Q Consensus 196 MrY~~P~I~eal~~L~~~GidrIV-vLPLyPqyS~sTtgS~~~~l~ea~~e~~~~~~i~v~~I~~~~~~ 263 (308)
.......+++..+-+.+.+++.+| .+|+...=+.+.....++.|.+.+++.- +++++.+++..+..
T Consensus 33 ~~~~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~--~~ipV~~~DEr~TT 99 (135)
T PF03652_consen 33 RRNREKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRF--PGIPVILVDERLTT 99 (135)
T ss_dssp ECCCCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH---TSEEEEEECSCSH
T ss_pred CCCCchHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhc--CCCcEEEECCChhH
Confidence 444467777777777778888765 5888776555544444555555555432 45789888877754
No 156
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=22.54 E-value=2.4e+02 Score=25.88 Aligned_cols=55 Identities=18% Similarity=0.041 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCc
Q 021762 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (308)
Q Consensus 170 ~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyP 225 (308)
.+.+..++.+++.+.+.|.++....-+..+...+...+.++++.+.+-|+ +..++
T Consensus 146 ~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi-~~~~~ 200 (334)
T cd06342 146 AYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVF-FGGYY 200 (334)
T ss_pred chhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEE-EcCcc
Confidence 46677788888888877755544443444556788899999998888554 33344
No 157
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=22.03 E-value=3.9e+02 Score=24.83 Aligned_cols=50 Identities=8% Similarity=-0.126 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEE
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVv 220 (308)
+.+..++.+++.|.+.|..+.....+....+.....+.++++.++|-|++
T Consensus 144 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~~ 193 (333)
T cd06358 144 WPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLS 193 (333)
T ss_pred hhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcCCCEEEE
Confidence 34455667777777776555444556666777788888888888874443
No 158
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=21.99 E-value=1.9e+02 Score=29.13 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=29.9
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhc-CCCceeEEeeecCCC--CHHHHHHHHHHcCCCEEE
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAK-NLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLV 219 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~-g~~~~V~~AMrY~~P--~I~eal~~L~~~GidrIV 219 (308)
||||.|.. .+..+.+.|-+.+.+. +..-.+.+.+. .+| ..+|.++.|++.|+++|-
T Consensus 108 ~gGGtPs~-l~~~~l~~ll~~l~~~~~~~~~~e~tie-~np~~lt~e~l~~l~~aG~~ris 166 (453)
T PRK09249 108 WGGGTPTF-LSPEQLRRLMALLREHFNFAPDAEISIE-IDPRELDLEMLDALRELGFNRLS 166 (453)
T ss_pred ECCccccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEE-ecCCcCCHHHHHHHHHcCCCEEE
Confidence 58999976 2333333333333322 11111233332 234 567999999999997653
No 159
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=21.95 E-value=5.2e+02 Score=25.12 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=28.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHH--HHHHHHHH
Q 021762 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKR 212 (308)
Q Consensus 165 gSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~--eal~~L~~ 212 (308)
.+||...-++||+++.+.|...+ ++. .-|..|+.. ++.+.+.+
T Consensus 195 D~~Lt~~G~~QA~~l~~~l~~~~-~~d----~i~sSpl~Ra~qTA~~i~~ 239 (372)
T PRK07238 195 NPELTEVGRRQAAAAARYLAARG-GID----AVVSSPLQRARDTAAAAAK 239 (372)
T ss_pred CCCcCHHHHHHHHHHHHHHhccC-CCC----EEEECChHHHHHHHHHHHH
Confidence 46888888999999998886531 222 245677766 55555543
No 160
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=21.94 E-value=1.8e+02 Score=25.69 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCC
Q 021762 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216 (308)
Q Consensus 173 ~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~Gid 216 (308)
+.|.+.++..+.. +.+ .-+.+-...+...+.++++++.|+-
T Consensus 42 ~~~~~~l~~~~~~-~vd--gii~~~~~~~~~~~~i~~~~~~~ip 82 (273)
T cd06305 42 AKQADQIDQAIAQ-KVD--AIIIQHGRAEVLKPWVKRALDAGIP 82 (273)
T ss_pred HHHHHHHHHHHHc-CCC--EEEEecCChhhhHHHHHHHHHcCCC
Confidence 4566666666543 333 2332222223456778888887776
No 161
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.73 E-value=6.1e+02 Score=23.01 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEee--ecCCC----------CHHHHHHHHHHcCCCEEEEeecCccccccchhhHHHH
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGM--RYWYP----------FTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV 238 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AM--rY~~P----------~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS~~~~ 238 (308)
++...++.|++.+.+.|..+.+...+ ....| .+..+++-..+-|++.|++-|-+ +........++.
T Consensus 42 ~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~--~~~~~~e~~~~~ 119 (273)
T smart00518 42 LSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGS--YLKQSKEEALNR 119 (273)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc--ccCCCHHHHHHH
Q ss_pred HHHHHHHhccCCCCCeEEccCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEE
Q 021762 239 LQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVSFIV 291 (308)
Q Consensus 239 l~ea~~e~~~~~~i~v~~I~~~~~~p~YI~a~a~~I~e~l~~~~~~~~~~LLF 291 (308)
+.+.+++......--.-.++.-+..+..+-.-.+.+.+.++.....+.+.+.|
T Consensus 120 ~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v~~~~~~g~~l 172 (273)
T smart00518 120 IIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEIIDLIKELDRIGVCI 172 (273)
T ss_pred HHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHHHHhcCCCCCeEEEE
No 162
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=21.43 E-value=2e+02 Score=25.20 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCC
Q 021762 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216 (308)
Q Consensus 173 ~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~Gid 216 (308)
+.|.+.++..+. .+.+.-+..+ .+..++.++.+...|+-
T Consensus 42 ~~~~~~i~~l~~-~~vdgiii~~----~~~~~~~~~~l~~~~ip 80 (268)
T cd06298 42 EKELKVLNNLLA-KQVDGIIFMG----GKISEEHREEFKRSPTP 80 (268)
T ss_pred HHHHHHHHHHHH-hcCCEEEEeC----CCCcHHHHHHHhcCCCC
Confidence 445566665443 3344333322 23335677777766654
No 163
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=21.41 E-value=1.3e+02 Score=26.98 Aligned_cols=45 Identities=11% Similarity=-0.037 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEE
Q 021762 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (308)
Q Consensus 173 ~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVv 220 (308)
++|.+.++..+. .+.+--+-.+ .-.+..++.++++.+.|+--+++
T Consensus 41 ~~~~~~i~~~~~-~~~dgiii~~--~~~~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 41 EKVLSAIDNLGA-QGAKGFVICV--PDVKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcc--CchhhhHHHHHHHHhCCCeEEEe
Confidence 456666666543 3333222222 11245567788888888754433
No 164
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=21.17 E-value=2.1e+02 Score=29.54 Aligned_cols=110 Identities=16% Similarity=0.240 Sum_probs=53.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhc--CCCceeEEeeecCCC--CHHHHHHHHHHcCCCEEEEeecCccccccchhh---
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAK--NLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVVLPLYPQFSISTTGS--- 234 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~--g~~~~V~~AMrY~~P--~I~eal~~L~~~GidrIVvLPLyPqyS~sTtgS--- 234 (308)
+|||+|..- +.++.+.|-+.+.+. +......+.+..+.| ..+|.++.|++.|+++|- +=||-....+-.
T Consensus 224 fGGGTPt~L-~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RIS---IGvQS~~d~vLk~ig 299 (488)
T PRK08207 224 FGGGTPTSL-TAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRIS---INPQTMNDETLKAIG 299 (488)
T ss_pred EeCCCccCC-CHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEE---EcCCcCCHHHHHHhC
Confidence 389999642 223333333333222 111222444444565 367999999999998643 566643321211
Q ss_pred ---HHHHHHHHHHHhccC--CCCCeEEccCCCCChHHHHHHHHHHHHH
Q 021762 235 ---SIRVLQNIFREDAYL--SRLPVSIIRSWYQREGYVNSMADLIQKE 277 (308)
Q Consensus 235 ---~~~~l~ea~~e~~~~--~~i~v~~I~~~~~~p~YI~a~a~~I~e~ 277 (308)
..+.+.++++..+.. ..+.+.+|-....+. .+-+.+.++..
T Consensus 300 R~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt--~ed~~~tl~~l 345 (488)
T PRK08207 300 RHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEG--LEEVKHTLEEI 345 (488)
T ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCC--HHHHHHHHHHH
Confidence 123333443332211 124467777765443 33344444443
No 165
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.11 E-value=5.8e+02 Score=22.49 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=8.8
Q ss_pred HHHHHHHHHHcCCC
Q 021762 203 TEEAVQQIKRDRIT 216 (308)
Q Consensus 203 I~eal~~L~~~Gid 216 (308)
..+.++++.+.|+-
T Consensus 71 ~~~~i~~~~~~~ip 84 (271)
T cd06321 71 IAPAVKRAQAAGIV 84 (271)
T ss_pred hHHHHHHHHHCCCe
Confidence 35667777766653
No 166
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=21.08 E-value=4.2e+02 Score=23.43 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=8.8
Q ss_pred cCCCCchhHHHHHHH
Q 021762 162 IGGGSPLRKITDEQA 176 (308)
Q Consensus 162 IGggSPL~~iT~~Qa 176 (308)
++|+ |+..++-+..
T Consensus 28 v~g~-pli~~~l~~l 41 (233)
T cd06425 28 FCNK-PMIEHQIEAL 41 (233)
T ss_pred ECCc-chHHHHHHHH
Confidence 4555 8887775543
No 167
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=21.03 E-value=1.9e+02 Score=25.62 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCCceeEEeeecCCC-CHHHHHHHHHHcCCC
Q 021762 173 DEQAQALKTALEAKNLPVNVYVGMRYWYP-FTEEAVQQIKRDRIT 216 (308)
Q Consensus 173 ~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P-~I~eal~~L~~~Gid 216 (308)
+.|.+.++..+. .+.+.-+..+.....+ ...+.++++.+.|+.
T Consensus 42 ~~~~~~i~~l~~-~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ip 85 (273)
T cd01541 42 ERERKCLENMLS-QGIDGLIIEPTKSALPNPNIDLYLKLEKLGIP 85 (273)
T ss_pred HHHHHHHHHHHH-cCCCEEEEeccccccccccHHHHHHHHHCCCC
Confidence 456666766554 3444433322111111 123566777777775
No 168
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=21.02 E-value=7.1e+02 Score=24.96 Aligned_cols=26 Identities=8% Similarity=0.339 Sum_probs=18.1
Q ss_pred CCCeEEccCCCCChHHHHHHHHHHHH
Q 021762 251 RLPVSIIRSWYQREGYVNSMADLIQK 276 (308)
Q Consensus 251 ~i~v~~I~~~~~~p~YI~a~a~~I~e 276 (308)
+++..+|...+.+|.+.+-+.+-++.
T Consensus 126 gi~~~~v~g~~~d~~~~~~i~~~~ra 151 (452)
T cd00578 126 GIPFKVVYGHWKDEDVLRKIESWARA 151 (452)
T ss_pred CCceeEEECCCCCHHHHHHHHHHHHH
Confidence 36778888888888877666555543
No 169
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.99 E-value=2.5e+02 Score=27.49 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=29.0
Q ss_pred cCCCCchhHH---HHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEE
Q 021762 162 IGGGSPLRKI---TDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRL 218 (308)
Q Consensus 162 IGggSPL~~i---T~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrI 218 (308)
+|||.|..-- -++..+.|++.+. .+.++.+-. .-....+|.++.|++.|+++|
T Consensus 62 ~GGGTPs~L~~~~l~~ll~~i~~~~~---~~~eitiE~-nP~~lt~e~l~~lk~~G~nri 117 (353)
T PRK05904 62 LGGGTPNCLNDQLLDILLSTIKPYVD---NNCEFTIEC-NPELITQSQINLLKKNKVNRI 117 (353)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhcC---CCCeEEEEe-ccCcCCHHHHHHHHHcCCCEE
Confidence 4899996622 2233333333331 122333321 223346799999999999875
No 170
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=20.96 E-value=2.1e+02 Score=25.25 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEe
Q 021762 172 TDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (308)
Q Consensus 172 T~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvL 221 (308)
.+.|.+.++..+. .+.+.-+..+.. +. ...++++.+.|+. +|++
T Consensus 41 ~~~~~~~i~~~~~-~~vdgii~~~~~---~~-~~~~~~~~~~~ip-vV~~ 84 (268)
T cd06270 41 AEKEREAIEFLLE-RRCDALILHSKA---LS-DDELIELAAQVPP-LVLI 84 (268)
T ss_pred hHHHHHHHHHHHH-cCCCEEEEecCC---CC-HHHHHHHhhCCCC-EEEE
Confidence 3456666665554 344544444321 11 1237888877875 4444
No 171
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=20.93 E-value=2.7e+02 Score=26.09 Aligned_cols=52 Identities=15% Similarity=-0.018 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEe
Q 021762 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (308)
Q Consensus 170 ~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvL 221 (308)
.+.+...+.+++.|.+.|.++.....+.-+.......+.++++.++|-|++.
T Consensus 147 ~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~V~~~ 198 (333)
T cd06328 147 AFGRDGVAAFKAALEKLGAAIVTEEYAPTDTTDFTPYAQRLLDALKKVLFVI 198 (333)
T ss_pred cccHHHHHHHHHHHHhCCCEEeeeeeCCCCCcchHHHHHHHHhcCCCEEEEE
Confidence 3566677788888887776655555555667778888999999999876554
No 172
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=20.87 E-value=2.5e+02 Score=26.40 Aligned_cols=50 Identities=10% Similarity=-0.047 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEE
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVv 220 (308)
+.+..++..++.|.+.|.++.-...+..+...+...+.++++.+.|-|++
T Consensus 144 ~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~ 193 (334)
T cd06356 144 FGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKIQAAKPDFVMS 193 (334)
T ss_pred hhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHHHhcCCCEEEE
Confidence 56677777788887777655445556667788888888888888885543
No 173
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=20.82 E-value=2.4e+02 Score=26.57 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=36.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 021762 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPL 223 (308)
Q Consensus 163 GggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPL 223 (308)
||.||=.+++...+.++.++|++.|.++ ..- .+...+.+.++.+.++| ++++.
T Consensus 11 gg~s~e~~vsl~s~~~v~~aL~~~g~~~--~~~----~~~~~~~~~~l~~~~~d--~vf~~ 63 (296)
T PRK14569 11 GGDSPEREVSLKSGKAVLDSLISQGYDA--VGV----DASGKELVAKLLELKPD--KCFVA 63 (296)
T ss_pred CCCCCchHhHHHHHHHHHHHHHHcCCEE--EEE----cCCchhHHHHhhccCCC--EEEEe
Confidence 8999999999999999999998876543 221 11123445666666777 44443
No 174
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=20.73 E-value=2.2e+02 Score=28.25 Aligned_cols=57 Identities=23% Similarity=0.417 Sum_probs=31.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhc-CCCceeEEeeecCCC--CHHHHHHHHHHcCCCEEEE
Q 021762 162 IGGGSPLRKITDEQAQALKTALEAK-NLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVV 220 (308)
Q Consensus 162 IGggSPL~~iT~~Qa~aL~~~L~~~-g~~~~V~~AMrY~~P--~I~eal~~L~~~GidrIVv 220 (308)
+|||.|-.- ..++.+.|-+.+.+. +....+.+.+. ..| ..+|.++.|++.|+++|-+
T Consensus 72 ~GGGTps~l-~~~~l~~ll~~i~~~~~~~~~~eit~E-~~P~~lt~e~l~~l~~~Gvnrisl 131 (400)
T PRK07379 72 FGGGTPSLL-SVEQLERILTTLDQRFGIAPDAEISLE-IDPGTFDLEQLQGYRSLGVNRVSL 131 (400)
T ss_pred ECCCccccC-CHHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHCCCCEEEE
Confidence 499999753 223333333333221 22222344443 233 3568899999999987654
No 175
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=20.68 E-value=3.8e+02 Score=25.80 Aligned_cols=56 Identities=23% Similarity=0.027 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCcc
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPq 226 (308)
+.+..++.+++.|.+.|.+..+...+.=........+.++++.|.|-|++.+.++.
T Consensus 160 yg~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~ 215 (366)
T COG0683 160 YGEGLADAFKAALKALGGEVVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGGYGPD 215 (366)
T ss_pred cchhHHHHHHHHHHhCCCeEEEEEeeCCCCCChHHHHHHHHhcCCCEEEECCCCcc
Confidence 55677888888898888763333555555666888999999999996666665554
No 176
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=20.63 E-value=2.1e+02 Score=28.97 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=33.4
Q ss_pred hhcccCCCCchh---HHHHHHHHHHHHHHHhcCCCceeEEeee-cCCCCHHHHHHHHHHcCCCEEE
Q 021762 158 GYAAIGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMR-YWYPFTEEAVQQIKRDRITRLV 219 (308)
Q Consensus 158 ~Y~~IGggSPL~---~iT~~Qa~aL~~~L~~~g~~~~V~~AMr-Y~~P~I~eal~~L~~~GidrIV 219 (308)
..-.+|||.|.. ..-++..+.|++.++ ....+.+.+. ......+|.++.|++.|++++-
T Consensus 105 ~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~---~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvs 167 (453)
T PRK13347 105 SQLHWGGGTPTILNPDQFERLMAALRDAFD---FAPEAEIAVEIDPRTVTAEMLQALAALGFNRAS 167 (453)
T ss_pred EEEEEcCcccccCCHHHHHHHHHHHHHhCC---CCCCceEEEEeccccCCHHHHHHHHHcCCCEEE
Confidence 344469999975 444444555544432 1111233322 2223467999999999998763
No 177
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=20.52 E-value=6.8e+02 Score=23.11 Aligned_cols=55 Identities=13% Similarity=-0.031 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCcc
Q 021762 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (308)
Q Consensus 171 iT~~Qa~aL~~~L~~~g~~~~V~~AMrY~~P~I~eal~~L~~~GidrIVvLPLyPq 226 (308)
+.+..++.+++.+.+.|.++.-..-+..+.+.....+.+|++.+.|-| ++..++.
T Consensus 153 ~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i-~~~~~~~ 207 (345)
T cd06338 153 FSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAV-VVAGHFP 207 (345)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEE-EECCcch
Confidence 445667777778877665443223334456778889999999998844 4555544
No 178
>PTZ00445 p36-lilke protein; Provisional
Probab=20.22 E-value=7.2e+02 Score=23.28 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=58.0
Q ss_pred HhhcccCCCCchhHHHHHHHHHHHHHHHhcCCCceeE-E---eee-----cCCCC-------------HHHHHHHHHHcC
Q 021762 157 EGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVY-V---GMR-----YWYPF-------------TEEAVQQIKRDR 214 (308)
Q Consensus 157 ~~Y~~IGggSPL~~iT~~Qa~aL~~~L~~~g~~~~V~-~---AMr-----Y~~P~-------------I~eal~~L~~~G 214 (308)
..|...++-+-+ -..+-+.+..+.|++.|+.+.+. + .+- ||.|. +.+.+++|.+.|
T Consensus 14 ~~~~~~~~~~~~--~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~ 91 (219)
T PTZ00445 14 KEYIESGLFDHL--NPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSN 91 (219)
T ss_pred HHHHHhcccccC--CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCC
Confidence 456655544433 23455677778888877543111 1 122 67775 566777888899
Q ss_pred CCEEEEeecCcccc--ccchhhHH---HHHHHHHHHhccCCCCC--eEEccCCCCChHHH
Q 021762 215 ITRLVVLPLYPQFS--ISTTGSSI---RVLQNIFREDAYLSRLP--VSIIRSWYQREGYV 267 (308)
Q Consensus 215 idrIVvLPLyPqyS--~sTtgS~~---~~l~ea~~e~~~~~~i~--v~~I~~~~~~p~YI 267 (308)
+. |+|+....|-. ....+.++ +.++..+++..-...+. +-+=+.||++|.-.
T Consensus 92 I~-v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y 150 (219)
T PTZ00445 92 IK-ISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDY 150 (219)
T ss_pred Ce-EEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhh
Confidence 95 66666555522 22222222 45666666433111221 33566778888433
Done!