Query 021764
Match_columns 308
No_of_seqs 447 out of 2548
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:58:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lnz_A SPO0B-associated GTP-bi 100.0 2.6E-29 8.8E-34 230.9 11.4 214 69-304 87-330 (342)
2 1svi_A GTP-binding protein YSX 100.0 7.7E-28 2.6E-32 202.9 18.8 188 109-303 7-194 (195)
3 3pqc_A Probable GTP-binding pr 100.0 5.2E-27 1.8E-31 197.2 20.9 187 110-304 8-194 (195)
4 4dhe_A Probable GTP-binding pr 100.0 1.3E-27 4.6E-32 205.9 17.7 191 109-304 13-211 (223)
5 4dkx_A RAS-related protein RAB 99.9 5.9E-25 2E-29 189.6 13.3 154 125-303 13-175 (216)
6 4dcu_A GTP-binding protein ENG 99.9 1.4E-23 4.9E-28 200.2 20.6 174 123-307 193-372 (456)
7 2hjg_A GTP-binding protein ENG 99.9 1.4E-23 4.9E-28 199.2 19.9 173 123-306 173-351 (436)
8 1udx_A The GTP-binding protein 99.9 3.8E-24 1.3E-28 200.9 14.6 214 69-305 86-326 (416)
9 2nzj_A GTP-binding protein REM 99.9 2.1E-23 7E-28 172.1 16.1 160 125-306 4-171 (175)
10 3iev_A GTP-binding protein ERA 99.9 3E-23 1E-27 188.3 18.4 166 125-302 10-180 (308)
11 2il1_A RAB12; G-protein, GDP, 99.9 1.6E-23 5.6E-28 176.6 14.9 160 123-304 24-190 (192)
12 3q72_A GTP-binding protein RAD 99.9 1.5E-23 5E-28 171.7 13.6 156 125-305 2-165 (166)
13 1kao_A RAP2A; GTP-binding prot 99.9 4.7E-23 1.6E-27 168.1 15.3 155 126-304 4-166 (167)
14 4bas_A ADP-ribosylation factor 99.9 2.9E-23 9.9E-28 175.1 14.3 164 119-306 11-191 (199)
15 2fn4_A P23, RAS-related protei 99.9 5.2E-23 1.8E-27 170.4 15.5 162 122-307 6-175 (181)
16 2gf9_A RAS-related protein RAB 99.9 2.8E-23 9.6E-28 174.3 13.9 161 123-306 20-187 (189)
17 2a5j_A RAS-related protein RAB 99.9 4.5E-23 1.5E-27 173.5 15.2 161 123-306 19-186 (191)
18 3q85_A GTP-binding protein REM 99.9 3.7E-23 1.3E-27 169.8 14.1 158 125-305 2-168 (169)
19 1z0f_A RAB14, member RAS oncog 99.9 7.7E-23 2.6E-27 169.1 15.9 158 123-303 13-177 (179)
20 2hup_A RAS-related protein RAB 99.9 5.5E-23 1.9E-27 174.8 15.3 160 123-305 27-194 (201)
21 2cxx_A Probable GTP-binding pr 99.9 1.5E-22 5.3E-27 169.2 17.6 171 126-306 2-186 (190)
22 3tkl_A RAS-related protein RAB 99.9 7.2E-23 2.5E-27 172.3 15.7 161 123-306 14-181 (196)
23 1zbd_A Rabphilin-3A; G protein 99.9 1E-22 3.5E-27 172.7 16.7 158 125-305 8-172 (203)
24 3kkq_A RAS-related protein M-R 99.9 1.6E-22 5.6E-27 168.4 17.5 158 123-304 16-182 (183)
25 2ew1_A RAS-related protein RAB 99.9 6.2E-23 2.1E-27 174.8 15.0 159 124-305 25-190 (201)
26 3tw8_B RAS-related protein RAB 99.9 2.5E-23 8.4E-28 172.4 12.1 159 123-306 7-173 (181)
27 2bov_A RAla, RAS-related prote 99.9 1.8E-22 6.1E-27 171.1 17.6 161 121-305 10-178 (206)
28 1z06_A RAS-related protein RAB 99.9 4.6E-23 1.6E-27 173.0 13.6 160 122-304 17-188 (189)
29 2oil_A CATX-8, RAS-related pro 99.9 7.3E-23 2.5E-27 172.2 14.8 160 124-306 24-190 (193)
30 2fg5_A RAB-22B, RAS-related pr 99.9 2.2E-23 7.7E-28 175.6 11.5 159 120-303 18-185 (192)
31 3bc1_A RAS-related protein RAB 99.9 1.9E-22 6.6E-27 168.8 17.1 161 123-306 9-187 (195)
32 1u8z_A RAS-related protein RAL 99.9 1.5E-22 5.2E-27 165.2 16.1 155 125-303 4-166 (168)
33 2p5s_A RAS and EF-hand domain 99.9 1.1E-22 3.6E-27 172.4 15.6 163 122-303 25-196 (199)
34 3dz8_A RAS-related protein RAB 99.9 2.6E-23 8.9E-28 174.9 11.7 161 123-306 21-188 (191)
35 1z0j_A RAB-22, RAS-related pro 99.9 7.2E-23 2.5E-27 167.9 14.0 155 125-302 6-167 (170)
36 2a9k_A RAS-related protein RAL 99.9 2.2E-22 7.6E-27 167.5 16.9 160 124-307 17-184 (187)
37 4dsu_A GTPase KRAS, isoform 2B 99.9 2.4E-22 8.2E-27 167.7 16.8 157 125-306 4-168 (189)
38 1fzq_A ADP-ribosylation factor 99.9 2.3E-22 8E-27 168.0 16.7 159 123-306 14-180 (181)
39 2g6b_A RAS-related protein RAB 99.9 1.4E-22 4.7E-27 168.1 14.9 160 124-306 9-176 (180)
40 1g16_A RAS-related protein SEC 99.9 6.2E-23 2.1E-27 168.2 12.7 157 125-305 3-166 (170)
41 2dyk_A GTP-binding protein; GT 99.9 6.2E-23 2.1E-27 166.9 12.5 157 125-302 1-160 (161)
42 3t5g_A GTP-binding protein RHE 99.9 1.4E-23 4.8E-28 174.5 8.8 158 124-305 5-170 (181)
43 1r2q_A RAS-related protein RAB 99.9 8.8E-23 3E-27 167.2 13.1 155 125-302 6-167 (170)
44 2lkc_A Translation initiation 99.9 2.7E-22 9.4E-27 165.9 16.2 161 123-306 6-173 (178)
45 3iby_A Ferrous iron transport 99.9 9.7E-23 3.3E-27 180.2 13.9 161 125-301 1-164 (256)
46 1ek0_A Protein (GTP-binding pr 99.9 1.2E-22 4.1E-27 166.4 13.5 155 126-302 4-167 (170)
47 2bme_A RAB4A, RAS-related prot 99.9 1.5E-22 5.2E-27 168.8 14.4 159 124-305 9-174 (186)
48 1c1y_A RAS-related protein RAP 99.9 1.8E-22 6.1E-27 165.0 14.3 154 126-302 4-165 (167)
49 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.4E-22 8.2E-27 166.1 15.2 158 124-304 6-174 (177)
50 2efe_B Small GTP-binding prote 99.9 9.3E-23 3.2E-27 169.2 12.6 158 124-304 11-175 (181)
51 2hxs_A RAB-26, RAS-related pro 99.9 1.1E-22 3.7E-27 168.4 12.9 157 124-303 5-172 (178)
52 2qu8_A Putative nucleolar GTP- 99.9 1.7E-21 5.8E-26 168.7 20.8 172 123-305 27-206 (228)
53 3cbq_A GTP-binding protein REM 99.9 2.4E-22 8.2E-27 170.1 15.0 160 122-304 20-188 (195)
54 1mky_A Probable GTP-binding pr 99.9 9.7E-22 3.3E-26 186.7 20.8 172 124-306 179-357 (439)
55 3clv_A RAB5 protein, putative; 99.9 3E-22 1E-26 168.8 15.5 160 123-306 5-206 (208)
56 2f7s_A C25KG, RAS-related prot 99.9 1.5E-22 5.2E-27 173.5 13.8 158 123-305 23-200 (217)
57 2h57_A ADP-ribosylation factor 99.9 1.1E-22 3.9E-27 170.8 12.7 160 123-306 19-189 (190)
58 1z2a_A RAS-related protein RAB 99.9 9.6E-23 3.3E-27 166.8 11.7 155 124-303 4-166 (168)
59 1x3s_A RAS-related protein RAB 99.9 1.6E-22 5.5E-27 169.8 13.2 156 125-304 15-178 (195)
60 1upt_A ARL1, ADP-ribosylation 99.9 5.4E-22 1.8E-26 163.0 16.0 156 124-304 6-169 (171)
61 1zd9_A ADP-ribosylation factor 99.9 2.4E-22 8.1E-27 168.7 14.0 158 125-306 22-187 (188)
62 1z08_A RAS-related protein RAB 99.9 1.2E-22 4E-27 166.7 11.9 154 125-303 6-168 (170)
63 3ihw_A Centg3; RAS, centaurin, 99.9 7.9E-22 2.7E-26 165.3 17.1 160 121-307 16-183 (184)
64 1ky3_A GTP-binding protein YPT 99.9 1.9E-22 6.4E-27 167.2 12.9 164 123-307 6-181 (182)
65 3cph_A RAS-related protein SEC 99.9 5.1E-22 1.7E-26 169.3 15.8 159 123-305 18-183 (213)
66 2fu5_C RAS-related protein RAB 99.9 4.6E-23 1.6E-27 171.7 9.1 157 124-305 7-172 (183)
67 2bcg_Y Protein YP2, GTP-bindin 99.9 2E-22 7E-27 171.3 13.3 159 124-305 7-172 (206)
68 1r8s_A ADP-ribosylation factor 99.9 5.3E-22 1.8E-26 162.0 15.0 154 126-304 1-162 (164)
69 2y8e_A RAB-protein 6, GH09086P 99.9 2.2E-22 7.6E-27 166.3 12.9 156 126-304 15-177 (179)
70 2atv_A RERG, RAS-like estrogen 99.9 1.2E-21 4.3E-26 165.3 17.7 159 123-306 26-193 (196)
71 2wji_A Ferrous iron transport 99.9 4.3E-22 1.5E-26 163.8 14.0 157 126-302 4-163 (165)
72 2erx_A GTP-binding protein DI- 99.9 4.5E-22 1.5E-26 163.2 14.0 156 125-304 3-167 (172)
73 1zj6_A ADP-ribosylation factor 99.9 9.5E-22 3.3E-26 164.7 16.0 157 123-304 14-178 (187)
74 2ce2_X GTPase HRAS; signaling 99.9 1.9E-21 6.3E-26 158.3 17.1 153 126-303 4-164 (166)
75 2iwr_A Centaurin gamma 1; ANK 99.9 1.6E-21 5.3E-26 161.7 16.7 155 125-306 7-171 (178)
76 2o52_A RAS-related protein RAB 99.9 3.1E-22 1E-26 169.9 12.6 157 124-305 24-189 (200)
77 3oes_A GTPase rhebl1; small GT 99.9 8.4E-23 2.9E-27 173.3 8.6 160 122-305 21-188 (201)
78 3con_A GTPase NRAS; structural 99.9 1.5E-21 5.3E-26 163.5 15.9 157 125-306 21-185 (190)
79 2h17_A ADP-ribosylation factor 99.9 5.1E-22 1.7E-26 165.6 12.7 155 122-301 18-180 (181)
80 1ksh_A ARF-like protein 2; sma 99.9 1E-21 3.4E-26 164.1 14.2 157 123-304 16-180 (186)
81 1mky_A Probable GTP-binding pr 99.9 2E-21 6.8E-26 184.6 17.7 162 126-304 2-166 (439)
82 3reg_A RHO-like small GTPase; 99.9 3.7E-22 1.3E-26 168.2 11.2 160 123-304 21-188 (194)
83 2gf0_A GTP-binding protein DI- 99.9 1.4E-21 4.9E-26 164.6 14.9 157 123-304 6-171 (199)
84 4djt_A GTP-binding nuclear pro 99.9 1.1E-22 3.9E-27 174.5 8.1 160 123-305 9-176 (218)
85 3c5c_A RAS-like protein 12; GD 99.9 7.7E-22 2.6E-26 165.7 12.6 156 123-303 19-185 (187)
86 1f6b_A SAR1; gtpases, N-termin 99.9 4.7E-22 1.6E-26 168.7 11.4 152 125-301 25-196 (198)
87 3b1v_A Ferrous iron uptake tra 99.9 6.8E-22 2.3E-26 176.2 13.0 158 125-302 3-162 (272)
88 1wf3_A GTP-binding protein; GT 99.9 1.4E-21 4.9E-26 176.6 15.2 159 126-302 8-171 (301)
89 2g3y_A GTP-binding protein GEM 99.9 1.5E-21 5.2E-26 167.7 14.6 160 123-305 35-204 (211)
90 3a1s_A Iron(II) transport prot 99.9 4.8E-21 1.6E-25 169.5 18.0 159 125-303 5-166 (258)
91 3cpj_B GTP-binding protein YPT 99.9 4.2E-22 1.4E-26 171.9 10.8 158 123-303 11-175 (223)
92 1vg8_A RAS-related protein RAB 99.9 7.5E-22 2.6E-26 167.6 12.2 159 124-305 7-176 (207)
93 2atx_A Small GTP binding prote 99.9 8E-22 2.8E-26 165.9 12.0 161 123-302 16-191 (194)
94 3q3j_B RHO-related GTP-binding 99.9 3.2E-22 1.1E-26 171.8 9.6 162 123-304 25-203 (214)
95 3i8s_A Ferrous iron transport 99.9 7.3E-22 2.5E-26 176.3 12.1 162 125-302 3-167 (274)
96 1m2o_B GTP-binding protein SAR 99.9 7.8E-22 2.7E-26 166.1 11.5 152 125-301 23-189 (190)
97 2fh5_B SR-beta, signal recogni 99.9 1.9E-21 6.3E-26 166.4 14.0 157 124-301 6-213 (214)
98 2b6h_A ADP-ribosylation factor 99.9 1.8E-21 6E-26 164.2 13.6 158 121-303 25-190 (192)
99 1moz_A ARL1, ADP-ribosylation 99.9 1.1E-21 3.6E-26 163.3 12.0 159 123-306 16-182 (183)
100 3t1o_A Gliding protein MGLA; G 99.9 5.5E-22 1.9E-26 166.6 10.4 158 123-306 12-194 (198)
101 2q3h_A RAS homolog gene family 99.9 1.2E-21 4E-26 165.9 12.1 165 123-306 18-197 (201)
102 2wjg_A FEOB, ferrous iron tran 99.9 4.7E-21 1.6E-25 160.1 15.5 161 125-305 7-170 (188)
103 2j1l_A RHO-related GTP-binding 99.9 1.2E-21 4.3E-26 168.0 12.0 163 124-305 33-210 (214)
104 3gj0_A GTP-binding nuclear pro 99.9 3E-22 1E-26 172.4 7.8 156 122-304 12-175 (221)
105 2yc2_C IFT27, small RAB-relate 99.9 4.2E-22 1.4E-26 168.9 8.1 158 124-304 19-192 (208)
106 1pui_A ENGB, probable GTP-bind 99.9 9.3E-21 3.2E-25 161.4 16.5 176 123-304 24-199 (210)
107 2gj8_A MNME, tRNA modification 99.9 1.6E-21 5.5E-26 161.7 11.2 157 126-305 5-167 (172)
108 2x77_A ADP-ribosylation factor 99.9 1.4E-21 4.8E-26 163.8 10.8 158 123-305 20-185 (189)
109 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.3E-21 4.4E-26 162.9 10.3 160 125-303 5-179 (186)
110 2gco_A H9, RHO-related GTP-bin 99.9 2.2E-21 7.4E-26 164.7 11.4 160 125-303 25-199 (201)
111 3bwd_D RAC-like GTP-binding pr 99.9 5.8E-22 2E-26 164.6 6.9 161 123-302 6-179 (182)
112 2hjg_A GTP-binding protein ENG 99.8 1.4E-21 4.9E-26 185.4 10.2 159 125-303 3-164 (436)
113 2fv8_A H6, RHO-related GTP-bin 99.8 2.7E-21 9.4E-26 164.8 10.9 160 125-303 25-199 (207)
114 2j0v_A RAC-like GTP-binding pr 99.8 1.1E-21 3.7E-26 167.6 8.4 162 124-304 8-180 (212)
115 3llu_A RAS-related GTP-binding 99.8 6.7E-21 2.3E-25 161.0 12.6 168 119-302 14-195 (196)
116 1m7b_A RND3/RHOE small GTP-bin 99.8 2.3E-21 7.8E-26 162.0 9.6 161 124-303 6-182 (184)
117 3k53_A Ferrous iron transport 99.8 1.7E-20 5.9E-25 167.0 15.6 160 125-304 3-166 (271)
118 2cjw_A GTP-binding protein GEM 99.8 1.3E-20 4.6E-25 159.0 13.9 159 124-305 5-173 (192)
119 3gee_A MNME, tRNA modification 99.8 1.2E-20 4E-25 180.4 14.9 157 126-303 234-397 (476)
120 1xzp_A Probable tRNA modificat 99.8 7.4E-21 2.5E-25 181.9 13.3 157 126-303 244-404 (482)
121 4dcu_A GTP-binding protein ENG 99.8 3.1E-21 1.1E-25 184.1 10.6 173 110-302 8-183 (456)
122 4gzl_A RAS-related C3 botulinu 99.8 1.8E-21 6E-26 165.8 7.8 160 123-301 28-202 (204)
123 1gwn_A RHO-related GTP-binding 99.8 4.2E-21 1.4E-25 163.9 9.9 162 123-303 26-203 (205)
124 3o47_A ADP-ribosylation factor 99.8 1.7E-20 5.9E-25 171.6 12.4 156 124-304 164-327 (329)
125 3l0i_B RAS-related protein RAB 99.8 8.3E-23 2.8E-27 173.1 -3.6 158 123-303 31-195 (199)
126 2aka_B Dynamin-1; fusion prote 99.8 2.8E-20 9.7E-25 167.2 11.9 176 121-305 22-254 (299)
127 3lvq_E ARF-GAP with SH3 domain 99.8 2.8E-20 9.7E-25 179.2 12.5 157 125-306 322-486 (497)
128 3t5d_A Septin-7; GTP-binding p 99.8 5.9E-20 2E-24 163.8 12.6 164 125-301 8-201 (274)
129 3th5_A RAS-related C3 botulinu 99.7 7.1E-22 2.4E-26 167.8 0.0 161 123-302 28-203 (204)
130 3geh_A MNME, tRNA modification 99.8 5E-20 1.7E-24 175.4 11.6 157 126-304 225-384 (462)
131 1ega_A Protein (GTP-binding pr 99.8 2.9E-19 9.9E-24 161.5 15.7 160 126-301 9-172 (301)
132 2xtp_A GTPase IMAP family memb 99.8 1.4E-19 4.9E-24 159.7 12.4 172 122-304 19-208 (260)
133 1wb1_A Translation elongation 99.8 3.3E-19 1.1E-23 171.0 15.4 161 125-303 19-188 (482)
134 2zej_A Dardarin, leucine-rich 99.8 8.2E-20 2.8E-24 152.7 9.7 157 126-304 3-178 (184)
135 3lxw_A GTPase IMAP family memb 99.8 5.5E-19 1.9E-23 155.2 14.8 171 123-304 19-208 (247)
136 3sjy_A Translation initiation 99.8 3.4E-19 1.2E-23 167.4 14.0 163 122-302 5-190 (403)
137 3j2k_7 ERF3, eukaryotic polype 99.8 7.2E-19 2.5E-23 166.8 16.2 158 121-296 13-217 (439)
138 3qq5_A Small GTP-binding prote 99.8 3.1E-20 1E-24 174.8 6.5 163 119-302 28-194 (423)
139 2f9l_A RAB11B, member RAS onco 99.8 8.7E-19 3E-23 148.3 14.4 157 125-304 5-168 (199)
140 1s0u_A EIF-2-gamma, translatio 99.8 2.6E-18 9E-23 161.6 18.5 163 122-302 5-196 (408)
141 3lxx_A GTPase IMAP family memb 99.8 1.5E-18 5.3E-23 151.3 15.6 175 120-304 24-214 (239)
142 2e87_A Hypothetical protein PH 99.8 5.9E-18 2E-22 156.5 20.0 164 123-305 165-337 (357)
143 2wkq_A NPH1-1, RAS-related C3 99.8 2.3E-19 8E-24 163.1 9.2 161 124-303 154-329 (332)
144 3r7w_A Gtpase1, GTP-binding pr 99.8 8.6E-19 3E-23 158.8 12.3 159 126-300 4-177 (307)
145 1kk1_A EIF2gamma; initiation o 99.8 2.8E-18 9.7E-23 161.5 16.0 163 122-302 7-198 (410)
146 2qtf_A Protein HFLX, GTP-bindi 99.8 7.4E-18 2.5E-22 156.0 17.4 171 122-305 176-355 (364)
147 1oix_A RAS-related protein RAB 99.8 2.7E-18 9.1E-23 144.6 12.5 155 125-302 29-190 (191)
148 3tr5_A RF-3, peptide chain rel 99.8 2.8E-18 9.6E-23 165.9 12.7 115 124-251 12-149 (528)
149 2x2e_A Dynamin-1; nitration, h 99.8 6.7E-19 2.3E-23 162.6 7.9 169 123-303 29-257 (353)
150 2elf_A Protein translation elo 99.8 3.7E-18 1.3E-22 158.4 12.1 148 127-304 23-180 (370)
151 3p26_A Elongation factor 1 alp 99.7 4.5E-18 1.5E-22 163.3 11.4 150 124-293 32-227 (483)
152 3izy_P Translation initiation 99.7 2.8E-19 9.7E-24 172.5 3.0 161 124-303 3-167 (537)
153 3dpu_A RAB family protein; roc 99.7 9.9E-19 3.4E-23 169.9 6.6 157 123-304 39-208 (535)
154 2c78_A Elongation factor TU-A; 99.7 4.2E-18 1.4E-22 160.1 9.6 161 124-301 10-209 (405)
155 3c5h_A Glucocorticoid receptor 99.7 1.5E-17 5.2E-22 146.6 12.2 86 207-303 162-254 (255)
156 1jwy_B Dynamin A GTPase domain 99.7 1.2E-17 4.1E-22 151.3 11.8 169 122-303 21-261 (315)
157 1d2e_A Elongation factor TU (E 99.7 1.3E-17 4.5E-22 156.2 12.0 160 126-302 4-193 (397)
158 3r7w_B Gtpase2, GTP-binding pr 99.7 1.7E-17 6E-22 150.2 11.8 153 127-301 1-171 (331)
159 1g7s_A Translation initiation 99.7 2.5E-17 8.7E-22 161.1 13.4 164 125-304 5-218 (594)
160 3cb4_D GTP-binding protein LEP 99.7 2.2E-17 7.6E-22 161.5 12.8 157 124-302 3-180 (599)
161 2j69_A Bacterial dynamin-like 99.7 6.8E-17 2.3E-21 161.2 16.0 169 124-304 68-325 (695)
162 2qag_A Septin-2, protein NEDD5 99.7 2.6E-17 8.9E-22 152.3 12.0 166 125-304 37-233 (361)
163 1zun_B Sulfate adenylate trans 99.7 2.5E-17 8.4E-22 156.1 12.1 156 124-295 23-215 (434)
164 1zo1_I IF2, translation initia 99.7 1.7E-18 5.8E-23 165.8 2.5 158 124-300 3-163 (501)
165 1nrj_B SR-beta, signal recogni 99.7 2.5E-17 8.5E-22 141.0 9.4 117 122-252 9-136 (218)
166 3izq_1 HBS1P, elongation facto 99.7 1.9E-17 6.4E-22 162.8 9.6 155 123-294 165-362 (611)
167 2ywe_A GTP-binding protein LEP 99.7 5.3E-17 1.8E-21 158.6 12.7 156 124-302 5-182 (600)
168 1jny_A EF-1-alpha, elongation 99.7 8.8E-17 3E-21 152.4 11.6 158 124-295 5-204 (435)
169 3mca_A HBS1, elongation factor 99.7 2.8E-18 9.5E-23 168.3 0.8 158 123-300 175-393 (592)
170 3zvr_A Dynamin-1; hydrolase, D 99.7 8.6E-17 2.9E-21 160.2 10.8 167 123-301 49-275 (772)
171 3p32_A Probable GTPase RV1496/ 99.7 3.3E-16 1.1E-20 144.6 13.6 156 124-304 78-284 (355)
172 1f60_A Elongation factor EEF1A 99.7 2E-17 6.9E-22 157.7 5.5 154 125-294 7-202 (458)
173 3avx_A Elongation factor TS, e 99.7 2.3E-16 7.9E-21 161.7 12.5 162 123-301 294-483 (1289)
174 4a9a_A Ribosome-interacting GT 99.7 3.2E-16 1.1E-20 145.0 11.9 121 120-249 67-195 (376)
175 1r5b_A Eukaryotic peptide chai 99.7 1.2E-16 4E-21 152.7 7.9 157 125-295 43-243 (467)
176 1wxq_A GTP-binding protein; st 99.7 6.1E-17 2.1E-21 151.4 5.6 87 126-220 1-114 (397)
177 3t34_A Dynamin-related protein 99.6 3.9E-16 1.3E-20 144.3 10.5 164 124-300 33-257 (360)
178 2h5e_A Peptide chain release f 99.6 1.6E-15 5.5E-20 146.7 15.1 114 125-251 13-149 (529)
179 2www_A Methylmalonic aciduria 99.6 2.9E-16 9.9E-21 144.6 8.3 156 124-304 73-279 (349)
180 1h65_A Chloroplast outer envel 99.6 1.3E-15 4.5E-20 135.2 11.5 124 124-252 38-170 (270)
181 2xex_A Elongation factor G; GT 99.6 4.7E-15 1.6E-19 147.9 16.2 117 122-251 7-142 (693)
182 1dar_A EF-G, elongation factor 99.6 3.6E-15 1.2E-19 148.7 15.3 116 123-251 10-144 (691)
183 3def_A T7I23.11 protein; chlor 99.6 3.9E-15 1.3E-19 131.6 13.5 123 124-251 35-166 (262)
184 2dy1_A Elongation factor G; tr 99.6 1.5E-14 5E-19 143.8 17.2 113 124-249 8-139 (665)
185 2rdo_7 EF-G, elongation factor 99.6 2.5E-14 8.6E-19 142.8 18.1 116 123-251 8-149 (704)
186 2ged_A SR-beta, signal recogni 99.6 3.3E-15 1.1E-19 125.1 8.6 116 123-252 46-172 (193)
187 2qnr_A Septin-2, protein NEDD5 99.6 7.1E-15 2.4E-19 132.6 11.3 170 124-303 17-213 (301)
188 3vqt_A RF-3, peptide chain rel 99.6 1.7E-14 5.7E-19 140.2 13.3 115 125-252 31-168 (548)
189 2p67_A LAO/AO transport system 99.6 9.5E-15 3.3E-19 134.1 10.8 155 125-304 56-261 (341)
190 1yrb_A ATP(GTP)binding protein 99.5 2.1E-14 7.2E-19 126.3 11.4 170 125-305 14-258 (262)
191 2wsm_A Hydrogenase expression/ 99.5 3.5E-15 1.2E-19 127.9 5.9 155 124-306 29-216 (221)
192 2qpt_A EH domain-containing pr 99.5 6.5E-14 2.2E-18 136.1 15.4 128 121-251 61-233 (550)
193 2qag_C Septin-7; cell cycle, c 99.5 2.9E-14 1E-18 133.8 11.5 165 124-300 30-223 (418)
194 3h2y_A GTPase family protein; 99.5 2.4E-15 8.4E-20 139.3 -1.6 124 126-253 161-290 (368)
195 2hf9_A Probable hydrogenase ni 99.5 4.1E-14 1.4E-18 121.6 5.7 62 236-305 164-225 (226)
196 3ec1_A YQEH GTPase; atnos1, at 99.5 4.5E-15 1.6E-19 137.6 -0.4 124 126-253 163-291 (369)
197 3j25_A Tetracycline resistance 99.4 7.3E-14 2.5E-18 138.2 7.4 115 125-252 2-135 (638)
198 1jal_A YCHF protein; nucleotid 99.4 8.4E-13 2.9E-17 121.4 12.6 85 126-219 3-108 (363)
199 2dby_A GTP-binding protein; GD 99.4 3.8E-13 1.3E-17 124.3 10.3 85 126-219 2-111 (368)
200 2qm8_A GTPase/ATPase; G protei 99.4 6.7E-13 2.3E-17 121.5 11.5 110 171-304 148-261 (337)
201 1n0u_A EF-2, elongation factor 99.4 4.9E-13 1.7E-17 136.0 9.1 114 124-250 18-164 (842)
202 4fn5_A EF-G 1, elongation fact 99.4 2.4E-12 8.4E-17 128.8 11.4 117 122-251 10-152 (709)
203 2qag_B Septin-6, protein NEDD5 99.3 1.7E-11 6E-16 114.7 13.2 151 125-285 42-217 (427)
204 3ohm_A Guanine nucleotide-bind 99.2 1.7E-11 5.7E-16 111.4 6.6 127 165-304 160-318 (327)
205 3sop_A Neuronal-specific septi 99.2 1.2E-10 4.3E-15 103.1 10.7 126 126-252 3-156 (270)
206 4fid_A G protein alpha subunit 99.2 4.6E-11 1.6E-15 108.9 7.5 126 166-304 155-328 (340)
207 1puj_A YLQF, conserved hypothe 99.1 2.5E-10 8.5E-15 101.8 10.7 60 125-185 120-179 (282)
208 1u0l_A Probable GTPase ENGC; p 99.1 1.7E-11 5.9E-16 110.4 2.7 132 140-299 32-168 (301)
209 1tq4_A IIGP1, interferon-induc 99.1 1.3E-09 4.5E-14 101.9 14.7 168 126-303 70-252 (413)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.4E-09 4.9E-14 101.0 13.7 86 126-219 21-127 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.1 1.7E-10 5.6E-15 107.2 6.9 86 126-220 23-129 (396)
212 1cip_A Protein (guanine nucleo 99.0 2E-10 7E-15 105.5 6.5 131 161-304 182-344 (353)
213 2j37_W Signal recognition part 99.0 4.9E-10 1.7E-14 107.3 7.8 159 124-301 100-310 (504)
214 1zcb_A G alpha I/13; GTP-bindi 99.0 8.4E-10 2.9E-14 101.7 7.5 131 161-304 190-353 (362)
215 2xtz_A Guanine nucleotide-bind 98.9 3.2E-09 1.1E-13 97.5 7.5 118 172-304 184-345 (354)
216 1azs_C GS-alpha; complex (lyas 98.8 5.9E-09 2E-13 97.0 8.6 126 164-304 209-385 (402)
217 3l82_B F-box only protein 4; T 98.8 4.4E-09 1.5E-13 88.7 6.5 116 173-304 98-223 (227)
218 3cnl_A YLQF, putative uncharac 98.8 1.8E-09 6.1E-14 95.2 4.4 59 126-185 100-158 (262)
219 1puj_A YLQF, conserved hypothe 98.8 3E-08 1E-12 88.2 11.6 94 197-304 13-106 (282)
220 3h2y_A GTPase family protein; 98.7 4.6E-08 1.6E-12 90.4 8.9 100 193-302 58-158 (368)
221 3ec1_A YQEH GTPase; atnos1, at 98.7 8.4E-08 2.9E-12 88.6 10.1 100 193-302 60-160 (369)
222 3szr_A Interferon-induced GTP- 98.6 2.9E-07 1E-11 90.4 13.9 79 172-252 148-230 (608)
223 3l2o_B F-box only protein 4; s 98.6 7.4E-08 2.5E-12 85.1 7.8 100 193-304 199-308 (312)
224 1f5n_A Interferon-induced guan 98.6 7.2E-08 2.5E-12 93.9 7.0 101 123-230 36-143 (592)
225 2yv5_A YJEQ protein; hydrolase 98.5 2.4E-07 8.2E-12 83.2 9.0 86 205-299 77-164 (302)
226 3dm5_A SRP54, signal recogniti 98.5 4.1E-07 1.4E-11 85.5 10.2 144 125-293 100-280 (443)
227 2v3c_C SRP54, signal recogniti 98.5 1.8E-07 6.1E-12 88.1 6.7 115 125-250 99-252 (432)
228 3cnl_A YLQF, putative uncharac 98.3 2.5E-07 8.7E-12 81.4 4.1 81 203-300 17-97 (262)
229 3kl4_A SRP54, signal recogniti 98.3 2.3E-06 8E-11 80.3 8.7 145 125-292 97-278 (433)
230 1j8m_F SRP54, signal recogniti 98.0 1E-05 3.5E-10 72.3 6.8 145 126-294 99-281 (297)
231 2rcn_A Probable GTPase ENGC; Y 98.0 8.9E-06 3.1E-10 74.5 6.4 122 60-183 125-280 (358)
232 1t9h_A YLOQ, probable GTPase E 97.8 1.1E-05 3.7E-10 72.5 4.3 84 205-297 84-170 (307)
233 3e70_C DPA, signal recognition 97.8 0.00013 4.3E-09 66.1 10.2 22 126-147 130-151 (328)
234 1t9h_A YLOQ, probable GTPase E 97.6 1.9E-05 6.5E-10 70.8 1.9 124 56-183 77-236 (307)
235 3q5d_A Atlastin-1; G protein, 97.6 0.00016 5.6E-09 68.0 8.2 24 124-147 66-89 (447)
236 2xxa_A Signal recognition part 97.5 0.0005 1.7E-08 64.6 10.2 22 125-146 100-121 (433)
237 2yv5_A YJEQ protein; hydrolase 97.5 0.00018 6.3E-09 64.3 6.6 54 127-182 167-227 (302)
238 2rcn_A Probable GTPase ENGC; Y 97.4 0.00064 2.2E-08 62.1 10.1 82 206-298 129-213 (358)
239 2yhs_A FTSY, cell division pro 97.4 0.00097 3.3E-08 63.4 10.9 21 127-147 295-315 (503)
240 1vma_A Cell division protein F 97.3 0.00086 2.9E-08 60.0 9.4 21 127-147 106-126 (306)
241 1u0l_A Probable GTPase ENGC; p 97.3 0.00017 5.8E-09 64.4 4.6 57 127-183 171-233 (301)
242 3ney_A 55 kDa erythrocyte memb 97.1 0.00017 5.9E-09 60.3 1.8 22 127-148 21-42 (197)
243 1zu4_A FTSY; GTPase, signal re 97.0 0.012 4E-07 52.9 13.9 22 126-147 106-127 (320)
244 1ex7_A Guanylate kinase; subst 96.8 0.00024 8.2E-09 58.9 0.8 21 128-148 4-24 (186)
245 2ffh_A Protein (FFH); SRP54, s 96.7 0.0074 2.5E-07 56.4 10.1 22 126-147 99-120 (425)
246 1ye8_A Protein THEP1, hypothet 96.7 0.00078 2.7E-08 55.3 3.1 22 127-148 2-23 (178)
247 1kgd_A CASK, peripheral plasma 96.7 0.00086 2.9E-08 54.9 2.9 22 127-148 7-28 (180)
248 1lvg_A Guanylate kinase, GMP k 96.6 0.00094 3.2E-08 55.6 2.9 22 127-148 6-27 (198)
249 1znw_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 54.9 2.9 22 127-148 22-43 (207)
250 3tr0_A Guanylate kinase, GMP k 96.4 0.0014 4.7E-08 54.3 2.9 22 127-148 9-30 (205)
251 3a00_A Guanylate kinase, GMP k 96.4 0.0014 4.8E-08 53.8 2.9 22 127-148 3-24 (186)
252 1zp6_A Hypothetical protein AT 96.4 0.0016 5.5E-08 53.3 3.0 22 127-148 11-32 (191)
253 1z6g_A Guanylate kinase; struc 96.4 0.0016 5.6E-08 55.0 2.9 22 127-148 25-46 (218)
254 1s96_A Guanylate kinase, GMP k 96.3 0.0019 6.6E-08 54.8 2.9 22 127-148 18-39 (219)
255 3c8u_A Fructokinase; YP_612366 96.2 0.0019 6.3E-08 54.1 2.6 23 126-148 23-45 (208)
256 4gp7_A Metallophosphoesterase; 96.2 0.0023 7.7E-08 51.9 2.8 21 127-147 11-31 (171)
257 3tif_A Uncharacterized ABC tra 96.2 0.0023 8E-08 54.9 3.0 22 127-148 33-54 (235)
258 1bif_A 6-phosphofructo-2-kinas 96.1 0.0021 7.1E-08 60.9 2.6 24 125-148 39-62 (469)
259 4dzz_A Plasmid partitioning pr 96.1 0.0098 3.3E-07 49.0 6.5 62 172-249 77-143 (206)
260 3tau_A Guanylate kinase, GMP k 96.1 0.0026 9E-08 53.2 2.9 22 127-148 10-31 (208)
261 2pcj_A ABC transporter, lipopr 96.1 0.0026 9E-08 54.1 2.9 22 127-148 32-53 (224)
262 1htw_A HI0065; nucleotide-bind 96.1 0.0029 9.9E-08 50.9 2.9 22 127-148 35-56 (158)
263 1kag_A SKI, shikimate kinase I 96.1 0.003 1E-07 50.8 2.9 22 127-148 6-27 (173)
264 4ido_A Atlastin-1; GTPase, GTP 96.0 0.026 8.9E-07 52.9 9.4 24 123-146 65-88 (457)
265 2j41_A Guanylate kinase; GMP, 96.0 0.0032 1.1E-07 52.1 2.9 22 127-148 8-29 (207)
266 2onk_A Molybdate/tungstate ABC 96.0 0.0034 1.2E-07 54.1 3.1 22 127-148 26-47 (240)
267 2bdt_A BH3686; alpha-beta prot 96.0 0.0034 1.2E-07 51.4 2.9 21 127-147 4-24 (189)
268 3asz_A Uridine kinase; cytidin 96.0 0.0033 1.1E-07 52.4 2.8 22 127-148 8-29 (211)
269 2cbz_A Multidrug resistance-as 96.0 0.0034 1.2E-07 53.9 3.0 23 127-149 33-55 (237)
270 1b0u_A Histidine permease; ABC 96.0 0.0034 1.2E-07 54.7 3.0 22 127-148 34-55 (262)
271 3kb2_A SPBC2 prophage-derived 96.0 0.004 1.4E-07 49.8 3.2 22 127-148 3-24 (173)
272 3gfo_A Cobalt import ATP-bindi 95.9 0.0035 1.2E-07 55.1 3.0 22 127-148 36-57 (275)
273 1sgw_A Putative ABC transporte 95.9 0.0037 1.3E-07 52.9 3.0 22 127-148 37-58 (214)
274 4g1u_C Hemin import ATP-bindin 95.9 0.0036 1.2E-07 54.8 3.0 22 127-148 39-60 (266)
275 1np6_A Molybdopterin-guanine d 95.9 0.0045 1.5E-07 50.6 3.3 24 125-148 6-29 (174)
276 2qor_A Guanylate kinase; phosp 95.9 0.0037 1.3E-07 52.0 2.9 22 127-148 14-35 (204)
277 1g6h_A High-affinity branched- 95.9 0.0037 1.3E-07 54.3 3.0 22 127-148 35-56 (257)
278 2ff7_A Alpha-hemolysin translo 95.9 0.0038 1.3E-07 54.0 3.0 22 127-148 37-58 (247)
279 4eun_A Thermoresistant glucoki 95.9 0.0038 1.3E-07 51.8 2.9 22 127-148 31-52 (200)
280 1mv5_A LMRA, multidrug resista 95.9 0.0039 1.3E-07 53.7 3.0 22 127-148 30-51 (243)
281 1ukz_A Uridylate kinase; trans 95.9 0.0062 2.1E-07 50.4 4.1 29 120-148 10-38 (203)
282 2i3b_A HCR-ntpase, human cance 95.9 0.004 1.4E-07 51.6 2.9 22 127-148 3-24 (189)
283 2pze_A Cystic fibrosis transme 95.9 0.0041 1.4E-07 53.1 3.0 22 127-148 36-57 (229)
284 2olj_A Amino acid ABC transpor 95.9 0.0041 1.4E-07 54.3 3.0 22 127-148 52-73 (263)
285 1ji0_A ABC transporter; ATP bi 95.9 0.0042 1.4E-07 53.4 3.0 22 127-148 34-55 (240)
286 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0045 1.5E-07 53.6 3.2 22 127-148 31-52 (250)
287 2if2_A Dephospho-COA kinase; a 95.8 0.0048 1.6E-07 51.1 3.3 22 126-147 2-23 (204)
288 2v9p_A Replication protein E1; 95.8 0.0044 1.5E-07 55.3 3.1 21 127-147 128-148 (305)
289 1vpl_A ABC transporter, ATP-bi 95.8 0.0045 1.5E-07 53.8 3.0 22 127-148 43-64 (256)
290 2ghi_A Transport protein; mult 95.8 0.0045 1.5E-07 53.9 3.0 22 127-148 48-69 (260)
291 2qi9_C Vitamin B12 import ATP- 95.8 0.0045 1.6E-07 53.6 3.0 22 127-148 28-49 (249)
292 2zu0_C Probable ATP-dependent 95.8 0.0048 1.6E-07 54.0 3.1 22 127-148 48-69 (267)
293 2ixe_A Antigen peptide transpo 95.8 0.0046 1.6E-07 54.2 3.0 22 127-148 47-68 (271)
294 2bbw_A Adenylate kinase 4, AK4 95.8 0.0054 1.8E-07 52.6 3.3 21 126-146 28-48 (246)
295 3b85_A Phosphate starvation-in 95.8 0.0038 1.3E-07 52.5 2.3 22 127-148 24-45 (208)
296 3lw7_A Adenylate kinase relate 95.7 0.0051 1.7E-07 49.0 2.9 19 127-145 3-21 (179)
297 2eyu_A Twitching motility prot 95.7 0.0049 1.7E-07 53.7 3.0 22 127-148 27-48 (261)
298 2f1r_A Molybdopterin-guanine d 95.7 0.0026 9E-08 51.8 1.2 23 126-148 3-25 (171)
299 1knq_A Gluconate kinase; ALFA/ 95.7 0.0052 1.8E-07 49.6 2.9 21 127-147 10-30 (175)
300 2ihy_A ABC transporter, ATP-bi 95.7 0.005 1.7E-07 54.2 3.0 22 127-148 49-70 (279)
301 3lnc_A Guanylate kinase, GMP k 95.7 0.0035 1.2E-07 53.2 1.8 22 127-148 29-51 (231)
302 2yz2_A Putative ABC transporte 95.7 0.0052 1.8E-07 53.7 3.0 22 127-148 35-56 (266)
303 2nq2_C Hypothetical ABC transp 95.7 0.0052 1.8E-07 53.3 2.9 22 127-148 33-54 (253)
304 3t61_A Gluconokinase; PSI-biol 95.7 0.0069 2.4E-07 50.1 3.6 23 126-148 19-41 (202)
305 3uie_A Adenylyl-sulfate kinase 95.7 0.0056 1.9E-07 50.7 2.9 22 127-148 27-48 (200)
306 1cke_A CK, MSSA, protein (cyti 95.6 0.0059 2E-07 51.3 3.1 23 126-148 6-28 (227)
307 1ly1_A Polynucleotide kinase; 95.6 0.0063 2.2E-07 49.0 3.1 21 127-147 4-24 (181)
308 4a74_A DNA repair and recombin 95.6 0.0056 1.9E-07 51.4 2.8 22 127-148 27-48 (231)
309 3aez_A Pantothenate kinase; tr 95.6 0.0056 1.9E-07 54.8 2.9 23 126-148 91-113 (312)
310 3ec2_A DNA replication protein 95.5 0.0056 1.9E-07 49.7 2.5 22 127-148 40-61 (180)
311 3vaa_A Shikimate kinase, SK; s 95.5 0.0082 2.8E-07 49.7 3.5 22 126-147 26-47 (199)
312 1qhx_A CPT, protein (chloramph 95.5 0.007 2.4E-07 48.8 2.9 22 127-148 5-26 (178)
313 2ehv_A Hypothetical protein PH 95.5 0.0071 2.4E-07 51.4 3.1 21 127-147 32-52 (251)
314 3nh6_A ATP-binding cassette SU 95.5 0.0046 1.6E-07 55.3 1.9 22 127-148 82-103 (306)
315 2pjz_A Hypothetical protein ST 95.5 0.0073 2.5E-07 52.7 3.2 22 127-148 32-53 (263)
316 1nks_A Adenylate kinase; therm 95.5 0.0077 2.6E-07 49.0 3.1 22 127-148 3-24 (194)
317 1jjv_A Dephospho-COA kinase; P 95.5 0.0078 2.7E-07 49.9 3.1 22 126-147 3-24 (206)
318 3fvq_A Fe(3+) IONS import ATP- 95.4 0.0072 2.5E-07 55.1 3.1 23 127-149 32-54 (359)
319 2jaq_A Deoxyguanosine kinase; 95.4 0.0082 2.8E-07 49.3 3.1 22 127-148 2-23 (205)
320 3tui_C Methionine import ATP-b 95.4 0.0079 2.7E-07 55.0 3.1 23 127-149 56-78 (366)
321 2jeo_A Uridine-cytidine kinase 95.4 0.0079 2.7E-07 51.6 2.9 21 127-147 27-47 (245)
322 2bbs_A Cystic fibrosis transme 95.4 0.0077 2.7E-07 53.3 2.9 23 127-149 66-88 (290)
323 1lw7_A Transcriptional regulat 95.3 0.0066 2.3E-07 55.4 2.5 23 126-148 171-193 (365)
324 1z47_A CYSA, putative ABC-tran 95.3 0.0085 2.9E-07 54.6 3.2 23 127-149 43-65 (355)
325 1xjc_A MOBB protein homolog; s 95.3 0.01 3.6E-07 48.2 3.3 24 125-148 4-27 (169)
326 2qt1_A Nicotinamide riboside k 95.3 0.011 3.8E-07 49.0 3.5 23 126-148 22-44 (207)
327 2yyz_A Sugar ABC transporter, 95.3 0.0091 3.1E-07 54.5 3.2 23 127-149 31-53 (359)
328 3fb4_A Adenylate kinase; psych 95.3 0.01 3.5E-07 49.5 3.3 21 127-147 2-22 (216)
329 3trf_A Shikimate kinase, SK; a 95.3 0.012 4E-07 47.8 3.5 22 126-147 6-27 (185)
330 2kjq_A DNAA-related protein; s 95.3 0.0069 2.4E-07 48.0 2.1 22 127-148 38-59 (149)
331 3rlf_A Maltose/maltodextrin im 95.3 0.0091 3.1E-07 54.9 3.1 23 127-149 31-53 (381)
332 2it1_A 362AA long hypothetical 95.2 0.0094 3.2E-07 54.5 3.1 23 127-149 31-53 (362)
333 3dl0_A Adenylate kinase; phosp 95.2 0.011 3.7E-07 49.4 3.3 21 127-147 2-22 (216)
334 1y63_A LMAJ004144AAA protein; 95.2 0.014 4.8E-07 47.6 3.9 23 126-148 11-33 (184)
335 1g29_1 MALK, maltose transport 95.2 0.0099 3.4E-07 54.6 3.2 23 127-149 31-53 (372)
336 1kht_A Adenylate kinase; phosp 95.2 0.011 3.6E-07 48.1 3.1 21 127-147 5-25 (192)
337 2rhm_A Putative kinase; P-loop 95.2 0.01 3.5E-07 48.3 3.0 21 127-147 7-27 (193)
338 1v43_A Sugar-binding transport 95.2 0.01 3.5E-07 54.4 3.1 23 127-149 39-61 (372)
339 3zvl_A Bifunctional polynucleo 95.1 0.042 1.5E-06 51.0 7.4 22 127-148 260-281 (416)
340 3iij_A Coilin-interacting nucl 95.1 0.016 5.6E-07 46.8 4.1 22 126-147 12-33 (180)
341 1via_A Shikimate kinase; struc 95.1 0.011 3.8E-07 47.7 3.0 23 126-148 5-27 (175)
342 3cm0_A Adenylate kinase; ATP-b 95.1 0.012 4.1E-07 47.7 3.2 21 127-147 6-26 (186)
343 2cdn_A Adenylate kinase; phosp 95.1 0.016 5.6E-07 47.8 4.1 22 126-147 21-42 (201)
344 2gza_A Type IV secretion syste 95.1 0.011 3.6E-07 54.1 3.0 22 127-148 177-198 (361)
345 1zak_A Adenylate kinase; ATP:A 95.1 0.014 4.7E-07 49.1 3.5 22 126-147 6-27 (222)
346 1sq5_A Pantothenate kinase; P- 95.1 0.01 3.5E-07 52.9 2.8 23 126-148 81-103 (308)
347 3jvv_A Twitching mobility prot 95.1 0.01 3.6E-07 54.0 2.9 22 127-148 125-146 (356)
348 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.011 3.6E-07 53.4 2.9 22 127-148 173-194 (330)
349 1rz3_A Hypothetical protein rb 95.1 0.011 3.8E-07 49.0 2.8 22 126-147 23-44 (201)
350 1rj9_A FTSY, signal recognitio 95.0 0.011 3.9E-07 52.6 2.9 22 126-147 103-124 (304)
351 2x8a_A Nuclear valosin-contain 95.0 0.012 4.1E-07 51.6 2.9 21 128-148 47-67 (274)
352 3gd7_A Fusion complex of cysti 95.0 0.012 4.2E-07 54.3 3.1 22 127-148 49-70 (390)
353 1aky_A Adenylate kinase; ATP:A 94.9 0.017 5.9E-07 48.4 3.7 22 126-147 5-26 (220)
354 3tqc_A Pantothenate kinase; bi 94.9 0.016 5.6E-07 52.0 3.7 25 123-147 90-114 (321)
355 3d31_A Sulfate/molybdate ABC t 94.9 0.0088 3E-07 54.4 1.9 23 127-149 28-50 (348)
356 1ixz_A ATP-dependent metallopr 94.9 0.013 4.6E-07 50.2 2.9 21 128-148 52-72 (254)
357 1uf9_A TT1252 protein; P-loop, 94.8 0.016 5.5E-07 47.6 3.2 24 125-148 8-31 (203)
358 2plr_A DTMP kinase, probable t 94.8 0.015 5.2E-07 48.0 3.1 21 127-147 6-26 (213)
359 2ewv_A Twitching motility prot 94.8 0.013 4.5E-07 53.7 2.9 22 127-148 138-159 (372)
360 4e22_A Cytidylate kinase; P-lo 94.8 0.016 5.5E-07 49.9 3.3 21 126-146 28-48 (252)
361 1odf_A YGR205W, hypothetical 3 94.8 0.018 6.1E-07 51.0 3.6 24 125-148 31-54 (290)
362 3b9q_A Chloroplast SRP recepto 94.8 0.014 4.7E-07 52.0 2.9 21 127-147 102-122 (302)
363 2pt5_A Shikimate kinase, SK; a 94.8 0.016 5.5E-07 46.1 3.1 21 127-147 2-22 (168)
364 2v54_A DTMP kinase, thymidylat 94.8 0.016 5.3E-07 47.7 3.0 22 127-148 6-27 (204)
365 1tev_A UMP-CMP kinase; ploop, 94.8 0.016 5.5E-07 47.1 3.1 21 127-147 5-25 (196)
366 2c95_A Adenylate kinase 1; tra 94.8 0.02 6.8E-07 46.7 3.6 22 126-147 10-31 (196)
367 1zd8_A GTP:AMP phosphotransfer 94.8 0.018 6.1E-07 48.6 3.4 22 126-147 8-29 (227)
368 2iyv_A Shikimate kinase, SK; t 94.8 0.017 5.7E-07 46.9 3.1 22 126-147 3-24 (184)
369 1gtv_A TMK, thymidylate kinase 94.8 0.0064 2.2E-07 50.5 0.6 22 127-148 2-23 (214)
370 2z0h_A DTMP kinase, thymidylat 94.8 0.015 5.3E-07 47.4 2.9 22 127-148 2-23 (197)
371 1e4v_A Adenylate kinase; trans 94.8 0.017 5.7E-07 48.3 3.2 21 127-147 2-22 (214)
372 2yvu_A Probable adenylyl-sulfa 94.7 0.016 5.4E-07 47.2 2.9 23 126-148 14-36 (186)
373 2vp4_A Deoxynucleoside kinase; 94.7 0.012 4.3E-07 49.8 2.3 22 127-148 22-43 (230)
374 2w0m_A SSO2452; RECA, SSPF, un 94.7 0.016 5.4E-07 48.5 2.9 21 127-147 25-45 (235)
375 2pbr_A DTMP kinase, thymidylat 94.7 0.016 5.6E-07 47.1 2.9 21 127-147 2-22 (195)
376 1oxx_K GLCV, glucose, ABC tran 94.7 0.0086 2.9E-07 54.6 1.2 23 127-149 33-55 (353)
377 1e6c_A Shikimate kinase; phosp 94.7 0.02 6.9E-07 45.7 3.3 22 126-147 3-24 (173)
378 3cwq_A Para family chromosome 94.6 0.064 2.2E-06 44.7 6.5 64 172-250 69-134 (209)
379 2wwf_A Thymidilate kinase, put 94.6 0.018 6E-07 47.7 3.0 22 126-147 11-32 (212)
380 2pez_A Bifunctional 3'-phospho 94.6 0.018 6E-07 46.6 2.9 21 127-147 7-27 (179)
381 2bwj_A Adenylate kinase 5; pho 94.6 0.018 6E-07 47.2 2.8 23 126-148 13-35 (199)
382 3tlx_A Adenylate kinase 2; str 94.6 0.022 7.4E-07 48.8 3.5 23 125-147 29-51 (243)
383 1nij_A Hypothetical protein YJ 94.6 0.013 4.6E-07 52.4 2.2 24 125-148 4-27 (318)
384 3kta_A Chromosome segregation 94.5 0.019 6.6E-07 46.4 3.0 21 127-147 28-48 (182)
385 1jbk_A CLPB protein; beta barr 94.5 0.019 6.6E-07 46.0 2.9 23 126-148 44-66 (195)
386 1ak2_A Adenylate kinase isoenz 94.5 0.026 8.9E-07 47.8 3.8 24 125-148 16-39 (233)
387 1nn5_A Similar to deoxythymidy 94.5 0.02 6.8E-07 47.5 3.0 22 126-147 10-31 (215)
388 1cr0_A DNA primase/helicase; R 94.5 0.018 6.1E-07 50.7 2.8 22 127-148 37-58 (296)
389 1p9r_A General secretion pathw 94.5 0.018 6.1E-07 53.7 2.9 22 127-148 169-190 (418)
390 2ze6_A Isopentenyl transferase 94.5 0.019 6.5E-07 49.6 2.9 22 127-148 3-24 (253)
391 2oap_1 GSPE-2, type II secreti 94.5 0.019 6.4E-07 55.0 3.1 22 127-148 262-283 (511)
392 1qf9_A UMP/CMP kinase, protein 94.5 0.021 7.2E-07 46.3 3.0 22 126-147 7-28 (194)
393 1iy2_A ATP-dependent metallopr 94.4 0.019 6.6E-07 50.0 2.9 21 128-148 76-96 (278)
394 2obl_A ESCN; ATPase, hydrolase 94.4 0.02 6.7E-07 52.1 3.0 22 127-148 73-94 (347)
395 1gvn_B Zeta; postsegregational 94.4 0.019 6.3E-07 50.7 2.7 22 126-147 34-55 (287)
396 2npi_A Protein CLP1; CLP1-PCF1 94.4 0.019 6.4E-07 54.2 2.8 22 127-148 140-161 (460)
397 1in4_A RUVB, holliday junction 94.4 0.02 6.9E-07 51.5 2.9 22 127-148 53-74 (334)
398 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.024 8.3E-07 49.0 3.4 22 126-147 5-26 (260)
399 3sr0_A Adenylate kinase; phosp 94.3 0.026 8.8E-07 47.3 3.3 22 127-148 2-23 (206)
400 3nwj_A ATSK2; P loop, shikimat 94.3 0.022 7.5E-07 49.2 2.9 21 127-147 50-70 (250)
401 3b60_A Lipid A export ATP-bind 94.3 0.025 8.6E-07 54.9 3.6 22 127-148 371-392 (582)
402 2xb4_A Adenylate kinase; ATP-b 94.2 0.026 9E-07 47.5 3.2 21 127-147 2-22 (223)
403 2vli_A Antibiotic resistance p 94.2 0.018 6.1E-07 46.5 2.1 22 126-147 6-27 (183)
404 2cvh_A DNA repair and recombin 94.2 0.024 8.4E-07 47.0 2.9 21 127-147 22-42 (220)
405 2og2_A Putative signal recogni 94.2 0.023 7.8E-07 51.8 2.9 21 127-147 159-179 (359)
406 1uj2_A Uridine-cytidine kinase 94.2 0.029 9.9E-07 48.2 3.4 24 124-147 21-44 (252)
407 3b5x_A Lipid A export ATP-bind 94.1 0.029 9.8E-07 54.5 3.7 22 127-148 371-392 (582)
408 1n0w_A DNA repair protein RAD5 94.1 0.025 8.7E-07 47.7 2.9 22 127-148 26-47 (243)
409 1zuh_A Shikimate kinase; alpha 94.1 0.031 1.1E-06 44.5 3.3 23 125-147 7-29 (168)
410 1yqt_A RNAse L inhibitor; ATP- 94.0 0.027 9.4E-07 54.2 3.3 26 122-148 45-70 (538)
411 3ozx_A RNAse L inhibitor; ATP 94.0 0.031 1E-06 53.8 3.6 22 127-148 27-48 (538)
412 3be4_A Adenylate kinase; malar 94.0 0.03 1E-06 46.9 3.2 22 126-147 6-27 (217)
413 1vht_A Dephospho-COA kinase; s 94.0 0.027 9.2E-07 47.0 2.9 22 126-147 5-26 (218)
414 1m7g_A Adenylylsulfate kinase; 94.0 0.028 9.7E-07 46.8 2.9 22 127-148 27-48 (211)
415 3euj_A Chromosome partition pr 94.0 0.026 9E-07 53.5 2.9 21 127-147 31-51 (483)
416 2dpy_A FLII, flagellum-specifi 93.9 0.027 9.3E-07 52.8 3.0 22 127-148 159-180 (438)
417 2yl4_A ATP-binding cassette SU 93.9 0.026 8.8E-07 55.0 2.9 22 127-148 372-393 (595)
418 3qf4_B Uncharacterized ABC tra 93.9 0.029 9.8E-07 54.7 3.1 22 127-148 383-404 (598)
419 2p5t_B PEZT; postsegregational 93.8 0.025 8.5E-07 48.7 2.3 23 126-148 33-55 (253)
420 1lv7_A FTSH; alpha/beta domain 93.8 0.031 1.1E-06 47.9 2.9 22 127-148 47-68 (257)
421 4eaq_A DTMP kinase, thymidylat 93.8 0.032 1.1E-06 47.4 2.9 22 127-148 28-49 (229)
422 2f6r_A COA synthase, bifunctio 93.7 0.04 1.4E-06 48.3 3.5 24 124-147 74-97 (281)
423 3j16_B RLI1P; ribosome recycli 93.7 0.033 1.1E-06 54.4 3.1 28 121-149 100-127 (608)
424 4a82_A Cystic fibrosis transme 93.7 0.026 8.9E-07 54.8 2.4 22 127-148 369-390 (578)
425 3bos_A Putative DNA replicatio 93.6 0.036 1.2E-06 46.4 2.9 23 126-148 53-75 (242)
426 2p65_A Hypothetical protein PF 93.6 0.026 9E-07 45.1 2.0 23 126-148 44-66 (187)
427 3qf4_A ABC transporter, ATP-bi 93.6 0.031 1.1E-06 54.3 2.8 22 127-148 371-392 (587)
428 1svm_A Large T antigen; AAA+ f 93.6 0.035 1.2E-06 51.0 2.9 21 127-147 171-191 (377)
429 3umf_A Adenylate kinase; rossm 93.5 0.041 1.4E-06 46.5 3.1 21 128-148 32-52 (217)
430 2w58_A DNAI, primosome compone 93.5 0.039 1.3E-06 45.4 2.9 23 126-148 55-77 (202)
431 2grj_A Dephospho-COA kinase; T 93.5 0.042 1.4E-06 45.4 3.1 23 126-148 13-35 (192)
432 4f4c_A Multidrug resistance pr 93.5 0.027 9.3E-07 60.0 2.4 22 127-148 1107-1128(1321)
433 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.046 1.6E-06 43.1 3.1 21 127-147 25-45 (149)
434 3bk7_A ABC transporter ATP-bin 93.4 0.038 1.3E-06 54.0 3.0 26 122-148 115-140 (607)
435 3ozx_A RNAse L inhibitor; ATP 93.3 0.039 1.3E-06 53.1 3.0 22 127-148 296-317 (538)
436 1ltq_A Polynucleotide kinase; 93.3 0.045 1.5E-06 48.1 3.1 21 127-147 4-24 (301)
437 3r20_A Cytidylate kinase; stru 93.2 0.056 1.9E-06 46.2 3.5 22 126-147 10-31 (233)
438 3ake_A Cytidylate kinase; CMP 93.1 0.049 1.7E-06 44.8 2.9 21 127-147 4-24 (208)
439 1nlf_A Regulatory protein REPA 93.1 0.045 1.5E-06 47.7 2.8 21 127-147 32-52 (279)
440 3qf7_A RAD50; ABC-ATPase, ATPa 93.1 0.047 1.6E-06 49.8 3.1 20 127-146 25-44 (365)
441 1yqt_A RNAse L inhibitor; ATP- 93.0 0.052 1.8E-06 52.2 3.3 23 127-149 314-336 (538)
442 1njg_A DNA polymerase III subu 93.0 0.051 1.7E-06 45.1 2.9 22 127-148 47-68 (250)
443 1q3t_A Cytidylate kinase; nucl 93.0 0.068 2.3E-06 45.3 3.7 22 126-147 17-38 (236)
444 2chg_A Replication factor C sm 92.9 0.054 1.9E-06 44.4 2.9 22 127-148 40-61 (226)
445 2px0_A Flagellar biosynthesis 92.9 0.051 1.8E-06 48.1 2.8 22 126-147 106-127 (296)
446 3bk7_A ABC transporter ATP-bin 92.8 0.054 1.8E-06 52.9 3.1 23 127-149 384-406 (607)
447 2b8t_A Thymidine kinase; deoxy 92.7 0.13 4.5E-06 43.5 5.1 40 211-250 91-130 (223)
448 3b9p_A CG5977-PA, isoform A; A 92.7 0.056 1.9E-06 47.3 2.9 23 126-148 55-77 (297)
449 2qmh_A HPR kinase/phosphorylas 92.7 0.064 2.2E-06 44.7 3.0 22 127-148 36-57 (205)
450 3h4m_A Proteasome-activating n 92.7 0.058 2E-06 46.8 2.9 23 126-148 52-74 (285)
451 3j16_B RLI1P; ribosome recycli 92.6 0.06 2.1E-06 52.5 3.1 22 128-149 381-402 (608)
452 3n70_A Transport activator; si 92.6 0.07 2.4E-06 41.6 3.0 22 127-148 26-47 (145)
453 1zcb_A G alpha I/13; GTP-bindi 92.6 0.072 2.5E-06 48.6 3.4 24 123-146 31-54 (362)
454 2dr3_A UPF0273 protein PH0284; 92.5 0.066 2.2E-06 45.1 3.0 21 127-147 25-45 (247)
455 2qz4_A Paraplegin; AAA+, SPG7, 92.5 0.085 2.9E-06 45.0 3.7 23 126-148 40-62 (262)
456 3syl_A Protein CBBX; photosynt 92.5 0.086 2.9E-06 46.2 3.8 24 125-148 67-90 (309)
457 1tue_A Replication protein E1; 92.4 0.062 2.1E-06 45.0 2.5 21 127-147 60-80 (212)
458 3gmt_A Adenylate kinase; ssgci 92.4 0.078 2.7E-06 45.1 3.2 23 126-148 9-31 (230)
459 1sxj_E Activator 1 40 kDa subu 92.4 0.07 2.4E-06 47.8 3.1 21 127-147 38-58 (354)
460 3cf0_A Transitional endoplasmi 92.3 0.067 2.3E-06 47.2 2.9 22 127-148 51-72 (301)
461 2qby_A CDC6 homolog 1, cell di 92.2 0.067 2.3E-06 48.1 2.8 22 127-148 47-68 (386)
462 1fnn_A CDC6P, cell division co 92.2 0.076 2.6E-06 48.0 3.2 23 126-148 45-67 (389)
463 3t15_A Ribulose bisphosphate c 92.2 0.09 3.1E-06 46.3 3.6 22 127-148 38-59 (293)
464 1qhl_A Protein (cell division 92.2 0.012 4.2E-07 50.1 -2.1 21 128-148 30-50 (227)
465 1l8q_A Chromosomal replication 92.1 0.073 2.5E-06 47.3 2.9 23 126-148 38-60 (324)
466 1sxj_C Activator 1 40 kDa subu 92.1 0.092 3.1E-06 47.0 3.5 23 126-148 47-69 (340)
467 2ga8_A Hypothetical 39.9 kDa p 92.0 0.11 3.6E-06 47.3 3.8 24 125-148 24-47 (359)
468 1pzn_A RAD51, DNA repair and r 92.0 0.077 2.6E-06 48.1 2.8 22 127-148 133-154 (349)
469 3cr8_A Sulfate adenylyltranfer 91.8 0.052 1.8E-06 52.4 1.6 22 127-148 371-392 (552)
470 4f4c_A Multidrug resistance pr 91.8 0.091 3.1E-06 56.0 3.5 22 127-148 446-467 (1321)
471 3d3q_A TRNA delta(2)-isopenten 91.6 0.099 3.4E-06 47.2 3.1 22 127-148 9-30 (340)
472 4fcw_A Chaperone protein CLPB; 91.6 0.11 3.8E-06 45.5 3.5 22 127-148 49-70 (311)
473 3tqf_A HPR(Ser) kinase; transf 91.6 0.1 3.6E-06 42.4 2.9 22 127-148 18-39 (181)
474 3g5u_A MCG1178, multidrug resi 91.6 0.093 3.2E-06 55.7 3.3 22 127-148 418-439 (1284)
475 3qks_A DNA double-strand break 91.6 0.11 3.6E-06 43.2 3.1 21 127-147 25-45 (203)
476 1ofh_A ATP-dependent HSL prote 91.5 0.095 3.2E-06 45.8 2.9 23 126-148 51-73 (310)
477 3crm_A TRNA delta(2)-isopenten 91.5 0.095 3.3E-06 47.0 2.9 22 127-148 7-28 (323)
478 1d2n_A N-ethylmaleimide-sensit 91.4 0.1 3.5E-06 45.1 2.9 23 126-148 65-87 (272)
479 1p5z_B DCK, deoxycytidine kina 91.4 0.069 2.3E-06 46.1 1.8 24 125-148 24-47 (263)
480 1a7j_A Phosphoribulokinase; tr 91.4 0.065 2.2E-06 47.2 1.6 22 126-147 6-27 (290)
481 3co5_A Putative two-component 91.3 0.067 2.3E-06 41.6 1.5 22 127-148 29-50 (143)
482 2ocp_A DGK, deoxyguanosine kin 91.2 0.11 3.6E-06 44.2 2.8 22 127-148 4-25 (241)
483 3a8t_A Adenylate isopentenyltr 91.1 0.15 5E-06 46.0 3.7 22 127-148 42-63 (339)
484 2iw3_A Elongation factor 3A; a 91.1 0.065 2.2E-06 55.0 1.5 22 127-148 701-722 (986)
485 1ko7_A HPR kinase/phosphatase; 90.9 0.12 4.2E-06 46.0 3.0 23 127-149 146-168 (314)
486 2iw3_A Elongation factor 3A; a 90.9 0.12 3.9E-06 53.2 3.1 22 127-148 463-484 (986)
487 4edh_A DTMP kinase, thymidylat 90.9 0.13 4.4E-06 43.1 2.9 21 127-147 8-28 (213)
488 1sxj_D Activator 1 41 kDa subu 90.9 0.12 4.1E-06 46.1 2.9 22 127-148 60-81 (353)
489 3ux8_A Excinuclease ABC, A sub 90.9 0.077 2.6E-06 52.4 1.7 20 127-146 350-369 (670)
490 2r62_A Cell division protease 90.9 0.06 2E-06 46.3 0.9 22 127-148 46-67 (268)
491 3m6a_A ATP-dependent protease 90.9 0.11 3.9E-06 49.9 2.9 22 127-148 110-131 (543)
492 1xwi_A SKD1 protein; VPS4B, AA 90.8 0.12 4.1E-06 46.1 2.9 23 126-148 46-68 (322)
493 4b4t_K 26S protease regulatory 90.8 0.12 4.1E-06 48.2 2.9 22 127-148 208-229 (428)
494 3exa_A TRNA delta(2)-isopenten 90.8 0.13 4.4E-06 45.9 3.0 22 127-148 5-26 (322)
495 2h92_A Cytidylate kinase; ross 90.8 0.13 4.5E-06 42.7 2.9 22 126-147 4-25 (219)
496 3lda_A DNA repair protein RAD5 90.7 0.13 4.3E-06 47.6 3.0 20 127-146 180-199 (400)
497 1tf7_A KAIC; homohexamer, hexa 90.7 0.12 4E-06 49.5 2.8 20 128-147 42-63 (525)
498 2v1u_A Cell division control p 90.7 0.11 3.7E-06 46.8 2.5 23 126-148 45-67 (387)
499 3eie_A Vacuolar protein sortin 90.6 0.13 4.4E-06 45.8 2.9 23 126-148 52-74 (322)
500 2dhr_A FTSH; AAA+ protein, hex 90.6 0.12 4.2E-06 49.1 2.9 22 127-148 66-87 (499)
No 1
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.96 E-value=2.6e-29 Score=230.89 Aligned_cols=214 Identities=24% Similarity=0.308 Sum_probs=155.3
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCC--------------CCeEEEEc
Q 021764 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDG--------------LPEFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~--------------~~~I~lvG 132 (308)
|.||+||.+.+.++. +.++..+++++++++||.|| .+|.+|.++.+++|+.++.+ .++|+|+|
T Consensus 87 ~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG-~Gn~~f~~~~~~~p~~~~~g~~g~~~~~~leLk~la~V~lvG 165 (342)
T 1lnz_A 87 IKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGG-RGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVG 165 (342)
T ss_dssp EEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCC-CCGGGSCBTTBSSCCCCCCCCCCCEEEEEEEEECCCCEEEES
T ss_pred EEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCc-cCccccccccccccccccCCCCcchhhHhhhhhhcCeeeeeC
Confidence 999999999987664 45566779999999999885 99999999999999988776 35899999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeC--CCEEEecCCCcccC-CCchhhhhchHHHHHHHHHhcCC
Q 021764 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIN--DSWYLVDLPGYGYA-AAPRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~--~~~~liDtpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.+|||||||+|+|++.+ ..+...+.+|.. ...+.++ ..+.+|||||+.+. ..... +...|+.....
T Consensus 166 ~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~-------l~~~fl~~i~~ 236 (342)
T 1lnz_A 166 FPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG-------LGHQFLRHIER 236 (342)
T ss_dssp STTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT-------THHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch-------hHHHHHHHHHh
Confidence 99999999999999875 234555555543 2344454 37999999998652 22222 33344444444
Q ss_pred ccEEEEEEeCCC---CCChhHH-HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021764 208 LVSVFLLIDASI---PAKPIDL-EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 208 ~~~vl~ViD~~~---~~~~~~~-~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
++++++|+|+++ .....+. .+...+. ..++|+++|+||+|+... .+.++++.+.+. ...
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--------~e~~~~l~~~l~----~~~ 304 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--------AENLEAFKEKLT----DDY 304 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--------HHHHHHHHHHCC----SCC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--------HHHHHHHHHHhh----cCC
Confidence 567999999987 3333322 1222222 147999999999999752 233444444332 226
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 279 PWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++++||++++|+++++++|.+.+.+
T Consensus 305 ~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 305 PVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 89999999999999999999988764
No 2
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=7.7e-28 Score=202.85 Aligned_cols=188 Identities=38% Similarity=0.584 Sum_probs=137.5
Q ss_pred HHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCch
Q 021764 109 EFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 109 ~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~ 188 (308)
+|..+.....+.+....++|+++|.+|||||||+|+|++..+...+.+.+++|.....+..++++.+|||||+.......
T Consensus 7 ~~~~s~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 86 (195)
T 1svi_A 7 EIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSK 86 (195)
T ss_dssp EEEEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCH
T ss_pred EEEEecCChhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCH
Confidence 45555555556677788999999999999999999999987666778888888877777777899999999987654433
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021764 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
.....+..++..|+..+..++++++|+|++++.+..+.++..|+...+.|+++|+||+|+.+..+ .....+++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-----~~~~~~~~~~ 161 (195)
T 1svi_A 87 SEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGK-----WDKHAKVVRQ 161 (195)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGG-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHH-----HHHHHHHHHH
Confidence 33446777888888888777889999999998888887778888888999999999999986442 2222334443
Q ss_pred HHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 269 LIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+.. ....+++++||++|+|+++++++|.+.+.
T Consensus 162 ~~~~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 162 TLNI--DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHTC--CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcc--cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 3331 13478999999999999999999988763
No 3
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=5.2e-27 Score=197.22 Aligned_cols=187 Identities=43% Similarity=0.686 Sum_probs=144.8
Q ss_pred HhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchh
Q 021764 110 FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189 (308)
Q Consensus 110 f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~ 189 (308)
|..+.....+.+....++|+++|.+|||||||+|+|++.. ...+.+.++++........+.++.+|||||+........
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 86 (195)
T 3pqc_A 8 LVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKK 86 (195)
T ss_dssp EEEEECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHH
T ss_pred HHHHhcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECCcEEEEECCCCccccCChh
Confidence 3444455556667788899999999999999999999986 456778888888777777778999999999865433333
Q ss_pred hhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021764 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
....+..++..|+.....++++++|+|++......+..+..|+...++|+++|+||+|+.+..+ .....+++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-----~~~~~~~~~~~ 161 (195)
T 3pqc_A 87 ERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSE-----RAKKLEEHRKV 161 (195)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGG-----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHH-----HHHHHHHHHHH
Confidence 3346777888999999888999999999988888777788888888999999999999985432 22223333333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.... ...+++++||++|+|+++++++|.+.+.+
T Consensus 162 ~~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 162 FSKY--GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHSS--CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred Hhhc--CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 3321 23689999999999999999999988753
No 4
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=1.3e-27 Score=205.90 Aligned_cols=191 Identities=31% Similarity=0.548 Sum_probs=148.3
Q ss_pred HHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC----CCEEEecCCCcccC
Q 021764 109 EFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN----DSWYLVDLPGYGYA 184 (308)
Q Consensus 109 ~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpG~~~~ 184 (308)
+|..+.....+.+....++|+++|.+|||||||+|+|++.++...+...+++|.....+... ..+.+|||||+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 13 RFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp EEEEEECSGGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred hHHhcccchhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 34445555556667778899999999999999999999987556788888888876666654 48999999998765
Q ss_pred CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHH
Q 021764 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
....+....|..++..|+.....++++++|+|++++.+..+..+..++...++|+++|+||+|+....+ .....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~-----~~~~~~ 167 (223)
T 4dhe_A 93 EVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQE-----SINALR 167 (223)
T ss_dssp CCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHH-----HHHHHH
T ss_pred cCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhh-----HHHHHH
Confidence 444444456778888999998888999999999988888887888888888899999999999986432 222344
Q ss_pred HHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 265 DFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 265 ~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+.+.+.... ....+++++||++|+|+++++++|.+.+..
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 168 ATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 4444444321 245789999999999999999999988754
No 5
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.92 E-value=5.9e-25 Score=189.61 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=113.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+|+|.+|||||||+++|+.+.+...+.++.|.......+..++ .+.+|||+|.. +|..+...|
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe----------~~~~l~~~~ 82 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE----------RFRSLIPSY 82 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTT----------TCGGGHHHH
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCch----------hhhhHHHHH
Confidence 46999999999999999999999877666666666555555555555 57899999953 455677888
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++.++. +++|+|.++..++... ..|+. ..+.|++||+||+|+.+.+. +..++.+++.+.++
T Consensus 83 ~~~a~~---~ilv~di~~~~Sf~~i--~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----V~~~e~~~~a~~~~---- 149 (216)
T 4dkx_A 83 IRDSAA---AVVVYDITNVNSFQQT--TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----VSIEEGERKAKELN---- 149 (216)
T ss_dssp HTTCSE---EEEEEETTCHHHHHTH--HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT----
T ss_pred hccccE---EEEEeecchhHHHHHH--HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----ccHHHHhhHHHHhC----
Confidence 876655 8999999987666543 22222 36789999999999987654 46677777777765
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++|+++||++|+||+++|+.|.+.+.
T Consensus 150 --~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 150 --VMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp --CEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred --CeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 78999999999999999999987764
No 6
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=1.4e-23 Score=200.24 Aligned_cols=174 Identities=21% Similarity=0.326 Sum_probs=122.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+|+|++.+. ..++..+++|.+. ..+..++ .+.+|||||+.+.....+..+.+..+..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 4467999999999999999999998754 5677888888764 3455555 7999999998754322221124433333
Q ss_pred H-HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--C
Q 021764 200 D-YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--T 276 (308)
Q Consensus 200 ~-~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 276 (308)
. ++.. ++++++|+|++.+....+..+..++.+.++|+++|+||||+.+... ...+++.+.+.+.+. .
T Consensus 272 ~~~~~~---ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~ 341 (456)
T 4dcu_A 272 LKAIDR---SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE-------STMKEFEENIRDHFQFLD 341 (456)
T ss_dssp HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCS-------SHHHHHHHHHHHHCGGGT
T ss_pred HHHHhh---CCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCch-------HHHHHHHHHHHHhcccCC
Confidence 2 3333 3559999999999888888888888888999999999999986432 123333444433322 3
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
..+++++||++|+|++++|+++.+.+..+.+
T Consensus 342 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 342 YAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999887654
No 7
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=1.4e-23 Score=199.17 Aligned_cols=173 Identities=21% Similarity=0.341 Sum_probs=118.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+|+|++.++ ..++..+|+|.+. ..+.+++ .+.+|||||+.+.....+.-+.+..+..
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTT-EEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCc-eeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 3567999999999999999999999764 4577888888764 3445555 7999999998653322111113332322
Q ss_pred -HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--C
Q 021764 200 -DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--T 276 (308)
Q Consensus 200 -~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 276 (308)
.++.. ++++++|+|++++.+.++..+...+...++|+++|+||+|+.+... ...+++.+.+...+. .
T Consensus 252 ~~~~~~---ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-------~~~~~~~~~~~~~l~~~~ 321 (436)
T 2hjg_A 252 LKAIDR---SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE-------STMKEFEENIRDHFQFLD 321 (436)
T ss_dssp HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCT-------THHHHHHHHHHHHCGGGT
T ss_pred HHHHHh---CCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcch-------HHHHHHHHHHHHhcccCC
Confidence 23343 3569999999999998888777777778999999999999986432 112233333333222 3
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|+|++++++.+.+.+..+.
T Consensus 322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 322 YAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 479999999999999999999999888764
No 8
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.91 E-value=3.8e-24 Score=200.92 Aligned_cols=214 Identities=19% Similarity=0.264 Sum_probs=150.0
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCC--------------CeEEEEc
Q 021764 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGL--------------PEFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~--------------~~I~lvG 132 (308)
|.||+||.+.+.++. +.++..+++++++++||.|| .+|.+|.++.+++|+.++.+. ..|+|+|
T Consensus 86 ~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG-~Gn~~f~~~~~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG 164 (416)
T 1udx_A 86 IEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGG-RGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVG 164 (416)
T ss_dssp EEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCC-CCGGGGCCSSCSSCCEEECCCCCCEEEEEEEECCSCSEEEEC
T ss_pred EecCCccEEEecCCCcEEeeccCCCceEEEecCCCCC-cccceeecccccCcccccCCCCceEeeeeeEEcCCCEEEEEC
Confidence 999999999987665 45566779999999999885 999999999999998665553 3799999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeC--CCEEEecCCCcccCC-CchhhhhchHHHHHHHHHhcCC
Q 021764 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIN--DSWYLVDLPGYGYAA-APRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~--~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.+|||||||+++|++... .+...+.+|.. ...+.++ ..++++|+||+.+.. ....+. ..++.....
T Consensus 165 ~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~-------~~fl~~~er 235 (416)
T 1udx_A 165 YPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLG-------LEFLRHIAR 235 (416)
T ss_dssp CGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSC-------HHHHHHHTS
T ss_pred CCCCcHHHHHHHHHcCCc--cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhh-------HHHHHHHHH
Confidence 999999999999998742 34444444432 3344444 368999999986531 111111 122333344
Q ss_pred ccEEEEEEeCCCCCChhHH-----HHHHHhc-cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 208 LVSVFLLIDASIPAKPIDL-----EYASWLG-QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 208 ~~~vl~ViD~~~~~~~~~~-----~l~~~~~-~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
++.+++++|.+ .....+. ++..+.. ...+|.++|+||+|+... +.++.+.+.+.. ...+++
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---------~~~~~l~~~l~~---~g~~vi 302 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---------EAVKALADALAR---EGLAVL 302 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---------HHHHHHHHHHHT---TTSCEE
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---------HHHHHHHHHHHh---cCCeEE
Confidence 56799999997 2222111 2222211 136899999999998742 334455554432 246899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHH
Q 021764 282 MTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++||++++|+++++++|.+.+.+.
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred EEECCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999988653
No 9
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.91 E-value=2.1e-23 Score=172.13 Aligned_cols=160 Identities=15% Similarity=0.122 Sum_probs=105.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+ ....+.++.+.....+.+++ .+.+|||||.... .+..+...+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 74 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL--------DKSWSQESC 74 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHHT
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCC-ccccCccccceeEEEEEECCEEEEEEEEecCCCCcc--------chhhhHHhh
Confidence 46999999999999999999999765 34455677776666666665 5789999996421 012233343
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+.. ++++++|+|.++..+.... .+...+. ..++|+++|+||+|+.+.++ +..+..+.+...++
T Consensus 75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~~~~~~~----- 142 (175)
T 2nzj_A 75 LQG---GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCRE----VSVEEGRACAVVFD----- 142 (175)
T ss_dssp TTS---CSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCC----SCHHHHHHHHHHHT-----
T ss_pred ccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccc----cCHHHHHHHHHHcC-----
Confidence 333 4568999999876554432 1222222 24799999999999986543 23444444444432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|+|+++++++|.+.+...+
T Consensus 143 -~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 143 -CKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp -SEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred -CeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999887654
No 10
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=3e-23 Score=188.26 Aligned_cols=166 Identities=23% Similarity=0.291 Sum_probs=122.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC-C-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN-D-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.-.|+++|.+|||||||+|+|++.+. ..++..+++|+.. ..+..+ + ++.+|||||+........++..+......
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 34899999999999999999999864 5677888887653 334444 4 79999999997644223344455555566
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHH-HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLEY-ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~l-~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
++.. +|++++|+|++++.+..+..+ ...+...++|+++|+||+|+..... ......+.+.+.+....+
T Consensus 89 ~l~~---aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~--------~~~~~~~~l~~~~~~~~~ 157 (308)
T 3iev_A 89 SLEE---ADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAK--------NVLPLIDEIHKKHPELTE 157 (308)
T ss_dssp HHHH---CSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGG--------GGHHHHHHHHHHCTTCCC
T ss_pred Hhhc---CCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHH--------HHHHHHHHHHHhccCCCe
Confidence 6654 455999999999888887766 6777777899999999999983221 123333334444334578
Q ss_pred EEEeecCCCCCHHHHHHHHHHHH
Q 021764 280 WIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++++||++|.|+++++++|.+.+
T Consensus 158 i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 158 IVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHS
T ss_pred EEEEeCCCCCCHHHHHHHHHHhC
Confidence 99999999999999999998865
No 11
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.6e-23 Score=176.56 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=110.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+..++.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~ 93 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSITS 93 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH----------HHHHHHH
Confidence 3456999999999999999999999866545556666666666666665 68999999953 4555777
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHH---HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYAS---WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~---~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++..++ ++++|+|++++.+..+. .+.. .....++|+++|+||+|+.+.++ +..+..+.+.+.+
T Consensus 94 ~~~~~~d---~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----v~~~~~~~~~~~~----- 161 (192)
T 2il1_A 94 AYYRSAK---GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE----ITRQQGEKFAQQI----- 161 (192)
T ss_dssp HHHHHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHTS-----
T ss_pred HHhcCCC---EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc----cCHHHHHHHHHhc-----
Confidence 7776654 48999999976554432 1111 12235799999999999976433 2334444443322
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+++++||++|+|+++++++|.+.+.+
T Consensus 162 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 162 TGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 13789999999999999999999987653
No 12
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.90 E-value=1.5e-23 Score=171.67 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=96.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|++... ....+.++++.. ..+.+++ .+.+|||||.. .+..+...+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD----------GGRWLPGHC 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE-EEEEETTEEEEEEEEECC----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccceE-EEEEECCEEEEEEEEECCCCc----------cchhhhhhh
Confidence 46999999999999999999998654 455666777664 3334444 58899999964 233355566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..+ +++++|+|.+++.+.... .+...+ ...++|+++|+||+|+.+... +..+..+.+....
T Consensus 70 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 136 (166)
T 3q72_A 70 MAMG---DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE----VSVDEGRACAVVF------ 136 (166)
T ss_dssp ---C---CEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCC----SCHHHHHHHHHHT------
T ss_pred hhhC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccc----cCHHHHHHHHHHh------
Confidence 5544 458999999976554332 111111 125799999999999986543 2344444444443
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|+|++++|++|.+.+..+
T Consensus 137 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 137 DCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp TCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999999988765
No 13
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.90 E-value=4.7e-23 Score=168.11 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=109.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+.....++.+.. ....+.+++ .+.+|||||.. .+..++..++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~ 72 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTE----------QFASMRDLYI 72 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTT----------CCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCch----------hhHHHHHHHh
Confidence 589999999999999999999876543333333322 234445554 48899999953 3445666776
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.+++.+.... ++..+....++|+++|+||+|+.+..+ +..+..+.+.+..+
T Consensus 73 ~~~~---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~------ 139 (167)
T 1kao_A 73 KNGQ---GFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE----VSSSEGRALAEEWG------ 139 (167)
T ss_dssp HHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----SCHHHHHHHHHHHT------
T ss_pred ccCC---EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccccc----CCHHHHHHHHHHhC------
Confidence 6654 48999999876543332 222333335899999999999975433 23444555554442
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.|+++++++|.+.+.+
T Consensus 140 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 140 CPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp SCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 689999999999999999999988765
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.90 E-value=2.9e-23 Score=175.11 Aligned_cols=164 Identities=15% Similarity=0.209 Sum_probs=108.1
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHH
Q 021764 119 DCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 119 ~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
..+....++|+++|.+|||||||+++|++..+.. ...++.+. ....+.... .+.+|||||.. .+..
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~Dt~G~~----------~~~~ 78 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFEKGRVAFTVFDMGGAK----------KFRG 78 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEEETTEEEEEEEECCSG----------GGGG
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEEeCCEEEEEEECCCCH----------hHHH
Confidence 3445566799999999999999999999987543 33455553 333444444 79999999964 2333
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc----------CCCCEEEEeecCCCCCcccCCCCCchhhHH
Q 021764 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ----------NQIPMTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~----------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
++..|+. .++++++|+|++++.+.... .+..++.. .++|+++|+||+|+..... .+
T Consensus 79 ~~~~~~~---~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---------~~ 146 (199)
T 4bas_A 79 LWETYYD---NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT---------AA 146 (199)
T ss_dssp GGGGGCT---TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC---------HH
T ss_pred HHHHHHh---cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC---------HH
Confidence 4444443 45569999999987665443 22223222 2899999999999986532 22
Q ss_pred HHHHHHHhh---hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 265 DFQELIQGF---FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 265 ~~~~~~~~~---~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
++.+.+... ....++++++||++|+|++++|++|.+.+....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 147 ELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp HHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 232222211 123478999999999999999999999887654
No 15
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.90 E-value=5.2e-23 Score=170.44 Aligned_cols=162 Identities=14% Similarity=0.193 Sum_probs=110.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....++|+++|.+|||||||+++|++..+.....++.+.... ..+.+++ .+.+|||||... +..++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~ 74 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEE----------FGAMR 74 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTT----------TSCCH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchh----------hHHHH
Confidence 345679999999999999999999997543333333333222 3444554 588999999642 22245
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021764 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..++..++ ++++|+|.++..+.... ++.......++|+++|+||+|+.+.+. +..+..+.+....
T Consensus 75 ~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~--- 144 (181)
T 2fn4_A 75 EQYMRAGH---GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----VPRSEASAFGASH--- 144 (181)
T ss_dssp HHHHHHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----SCHHHHHHHHHHT---
T ss_pred HHHHhhCC---EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc----cCHHHHHHHHHHc---
Confidence 56666544 48999999876544332 122223346899999999999976443 2334444443332
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021764 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
..+++++||++|.|+++++++|.+.+.++.+
T Consensus 145 ---~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 145 ---HVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp ---TCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred ---CCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 3789999999999999999999998876553
No 16
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.90 E-value=2.8e-23 Score=174.32 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=113.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||..... ..+.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 89 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR----------TITT 89 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC----------CSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh----------hhHH
Confidence 3457999999999999999999999876545556667666655555544 68999999964311 1233
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++. .++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.+.+. +..+..+++.+.++
T Consensus 90 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 158 (189)
T 2gf9_A 90 AYYR---GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERV----VPAEDGRRLADDLG---- 158 (189)
T ss_dssp GGGT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT----
T ss_pred Hhcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccC----CCHHHHHHHHHHcC----
Confidence 3333 34569999999876544332 1222222 24799999999999976433 23455566655543
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|+++++++|.+.+.+..
T Consensus 159 --~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 159 --FEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred --CeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999876654
No 17
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.90 E-value=4.5e-23 Score=173.50 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=111.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+||+++|.+|||||||+++|++.++.....++.+.+.....+.+++ .+.+|||||... +..++.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 88 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES----------FRSITR 88 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG----------TSCCCH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh----------hhhhHH
Confidence 3456999999999999999999999876444455556666666666665 689999999542 222344
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++.. ++++++|+|+++..+..+. .+...+. ..++|+++|+||+|+.+.+. +..+..+.+.+..+
T Consensus 89 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~~---- 157 (191)
T 2a5j_A 89 SYYRG---AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD----VKREEGEAFAREHG---- 157 (191)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT----
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccc----cCHHHHHHHHHHcC----
Confidence 55554 4559999999876544332 1111121 25799999999999975433 23445555554443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|+|++++|++|.+.+.+..
T Consensus 158 --~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 158 --LIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp --CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988776543
No 18
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.90 E-value=3.7e-23 Score=169.78 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=100.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHH-HHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDK-FTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~-~~~~ 200 (308)
.+||+++|.+|||||||+++|++..........++.......+.+++ .+.+|||||... +.. +...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~ 71 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD----------AGGWLQDH 71 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC------------------CH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccc----------cchhhhhh
Confidence 46999999999999999999997654333333333333344455555 578999999642 211 3334
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++..+ +++++|+|.+++.+.... .+..... ..++|+++|+||+|+.+... +..+..+.+.+.+
T Consensus 72 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 139 (169)
T 3q85_A 72 CLQTG---DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE----VSLEEGRHLAGTL----- 139 (169)
T ss_dssp HHHHC---SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHT-----
T ss_pred hhccC---CEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhccc----CCHHHHHHHHHHc-----
Confidence 44443 458999999876544332 1111111 24799999999999975443 3445555555444
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|+|++++|+++.+.+...
T Consensus 140 -~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 140 -SCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp -TCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred -CCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 36899999999999999999999887653
No 19
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.90 E-value=7.7e-23 Score=169.10 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=112.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+...+.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 82 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE----------RFRAVTR 82 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG----------GTCHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh----------HhhhhHH
Confidence 3457999999999999999999999876544555666666555666654 68999999953 3444666
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHH-HHH---HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDLE-YAS---WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~~-l~~---~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++..++ ++++|+|++++.+..+.. +.. .....++|+++|+||+|+.+... +..+.++++.+..
T Consensus 83 ~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 150 (179)
T 1z0f_A 83 SYYRGAA---GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD----VTYEEAKQFAEEN----- 150 (179)
T ss_dssp HHHHTCS---EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHT-----
T ss_pred HHhccCC---EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc----cCHHHHHHHHHHc-----
Confidence 7766554 589999998765443321 111 11236799999999999975432 2334444444333
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|.|++++|++|.+.+.
T Consensus 151 -~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 151 -GLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred -CCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999988763
No 20
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.90 E-value=5.5e-23 Score=174.75 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=109.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. ++..++.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 96 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE----------RFRTITQ 96 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCG----------GGHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH----------hHHHHHH
Confidence 3457999999999999999999998765433344444444455566655 68999999953 4555777
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.|+..+ +++++|+|+++..+.... .+...+. ..++|+++|+||+|+.+.+. +..+.++++.+.++
T Consensus 97 ~~~~~~---d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~~~~~~~---- 165 (201)
T 2hup_A 97 SYYRSA---NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----VSLAEAQSLAEHYD---- 165 (201)
T ss_dssp HHHTTC---SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHTT----
T ss_pred HHHhhC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccc----cCHHHHHHHHHHcC----
Confidence 777654 458999999876544332 1111121 25799999999999976432 23444555544432
Q ss_pred CCC-CEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 276 TAP-PWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 276 ~~~-~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
. +++++||++|+|++++|++|.+.+...
T Consensus 166 --~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 166 --ILCAIETSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp --CSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 5 899999999999999999999887654
No 21
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.90 E-value=1.5e-22 Score=169.22 Aligned_cols=171 Identities=23% Similarity=0.360 Sum_probs=119.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCC-chhhhhchHHHHHHHHHh
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA-PRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~~ 204 (308)
++|+++|.+|||||||+++|++..+. ....++++.....+.++ .+.+|||||+..... .......+..++..|+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS--SSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc--cCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999997642 44556666655555554 899999999754221 111123566778888887
Q ss_pred -cCCccEEEEEEeCCCCCCh-----------hHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 205 -RSTLVSVFLLIDASIPAKP-----------IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 205 -~~~~~~vl~ViD~~~~~~~-----------~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
.+.++++++|+|..+.... .+.++...+...++|+++|+||+|+.... .+..+++.+.++.
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------QEVINFLAEKFEV 151 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------HHHHHHHHHHHTC
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------HHHHHHHHHHhhh
Confidence 8888889999998643211 12233444445689999999999998632 3345555555542
Q ss_pred hhc-CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 273 FFQ-TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 273 ~~~-~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+. ...+++++||++|+|+++++++|.+.+.+.+
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 100 0135899999999999999999999886644
No 22
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.90 E-value=7.2e-23 Score=172.25 Aligned_cols=161 Identities=20% Similarity=0.264 Sum_probs=114.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....+..+.+.....+.+++ .+.+|||||.. .+..++.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 83 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITS 83 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGCTTHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH----------hhhhhHH
Confidence 3457999999999999999999999765444445555555556666665 58899999953 2333555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++..+ +++++|+|+++..+.... .+...+ ...++|+++|+||+|+.+... +..+..+.+.+.++
T Consensus 84 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 152 (196)
T 3tkl_A 84 SYYRGA---HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV----VDYTTAKEFADSLG---- 152 (196)
T ss_dssp HHHTTC---SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----SCHHHHHHHHHHTT----
T ss_pred HHHhhC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccc----cCHHHHHHHHHHcC----
Confidence 666544 459999999976543332 111111 124789999999999986543 23344555544443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|++++|++|.+.+....
T Consensus 153 --~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 153 --IPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp --CCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred --CcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999887653
No 23
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.90 E-value=1e-22 Score=172.67 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=114.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+..++..+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~ 77 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE----------RYRTITTAY 77 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch----------hhcchHHHh
Confidence 46999999999999999999999876444555666666555555554 68999999963 344566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|++++.+.... .+...+. ..++|+++|+||+|+.+... +..+..+.+.+.++
T Consensus 78 ~~~~---d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~------ 144 (203)
T 1zbd_A 78 YRGA---MGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----VSSERGRQLADHLG------ 144 (203)
T ss_dssp GGGC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----SCHHHHHHHHHHHT------
T ss_pred hcCC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccc----cCHHHHHHHHHHCC------
Confidence 5544 459999999876544332 1111221 25799999999999976433 24455566655543
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|.|++++|++|.+.+.+.
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 145 FEFFEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999877543
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.90 E-value=1.6e-22 Score=168.35 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=111.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||... +..++.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 84 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEE----------FSAMRE 84 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGG----------GCSSHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchh----------hHHHHH
Confidence 4457999999999999999999998755433333333333 34444554 366799999542 233555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++..++ ++++|+|.+++.+.... .+.......++|+++|+||+|+.+.+. +..+..+.+.+.++
T Consensus 85 ~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----v~~~~~~~~~~~~~--- 154 (183)
T 3kkq_A 85 QYMRTGD---GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK----VTRDQGKEMATKYN--- 154 (183)
T ss_dssp HHHHHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----SCHHHHHHHHHHHT---
T ss_pred HHHhcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccC----cCHHHHHHHHHHhC---
Confidence 6666654 48999999976444332 222333347899999999999976443 34555666666554
Q ss_pred cCCCCEEEeecC-CCCCHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSV-TNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~-~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||+ +|+|++++|++|.+.+.+
T Consensus 155 ---~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 155 ---IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp ---CCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred ---CeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 789999999 999999999999988754
No 25
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=6.2e-23 Score=174.83 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=112.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+..++..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~ 94 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE----------RFRSITQS 94 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 357999999999999999999999765434444555555555666665 68999999953 34445555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++.. ++++++|+|+++..+.... .+...+ ...++|+++|+||+|+.+.++ +..+..+.+.+..
T Consensus 95 ~~~~---~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~~~~~~------ 161 (201)
T 2ew1_A 95 YYRS---ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE----VSQQRAEEFSEAQ------ 161 (201)
T ss_dssp GSTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----SCHHHHHHHHHHH------
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----cCHHHHHHHHHHc------
Confidence 5543 4569999999876544332 111111 235789999999999975433 2344555554443
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|+|++++|++|.+.+...
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 162 DMYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 27899999999999999999999877654
No 26
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=172.40 Aligned_cols=159 Identities=23% Similarity=0.235 Sum_probs=110.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....+..+.+.....+.+++ .+.+|||||..... .++.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 76 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR----------TITS 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS----------SCCG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh----------hhHH
Confidence 4557999999999999999999999865433444444445555666665 58999999954311 1223
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++. .++++++|+|++++.+.... ..|+. ..++|+++|+||+|+.+... +..+....+....+
T Consensus 77 ~~~~---~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~--- 144 (181)
T 3tw8_B 77 TYYR---GTHGVIVVYDVTSAESFVNV--KRWLHEINQNCDDVCRILVGNKNDDPERKV----VETEDAYKFAGQMG--- 144 (181)
T ss_dssp GGGT---TCSEEEEEEETTCHHHHHHH--HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT---
T ss_pred HHhc---cCCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECCCCchhcc----cCHHHHHHHHHHcC---
Confidence 3333 34569999999986544432 22332 24689999999999876543 23344555544443
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|+++++++|.+.+...+
T Consensus 145 ---~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 145 ---IQLFETSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp ---CCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ---CeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999887654
No 27
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.90 E-value=1.8e-22 Score=171.15 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=112.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHH
Q 021764 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
+....++|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||.. .+..+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~ 78 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE----------DYAAI 78 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTT----------CCHHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChh----------hhHHH
Confidence 344567999999999999999999998765333333333332 23444554 68899999954 34556
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
+..|+...+. +++|+|+++..+.... .+..+....++|+++|+||+|+.+..+ +..+.+..+.+.++
T Consensus 79 ~~~~~~~~~~---~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~- 150 (206)
T 2bov_A 79 RDNYFRSGEG---FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----VSVEEAKNRAEQWN- 150 (206)
T ss_dssp HHHHHHHCSE---EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHHT-
T ss_pred HHHHHhhCCE---EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccc----ccHHHHHHHHHHhC-
Confidence 7777776554 8999999976544332 122222234899999999999976443 23444555544432
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|.|++++|++|.+.+.+.
T Consensus 151 -----~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 151 -----VNYVETSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp -----CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred -----CeEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999999887654
No 28
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.89 E-value=4.6e-23 Score=172.99 Aligned_cols=160 Identities=24% Similarity=0.287 Sum_probs=109.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchH-HH
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWD-KF 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~-~~ 197 (308)
....++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. ++. .+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 86 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE----------RFRKSM 86 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH----------HHHTTT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch----------hhhhhh
Confidence 34457999999999999999999998766444555556655555666655 68999999953 233 35
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
+..|+.. ++++++|+|+++..+.... ++.......++|+++|+||+|+.+.++ +..+..+.+.+..
T Consensus 87 ~~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~-- 157 (189)
T 1z06_A 87 VQHYYRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----VPTDLAQKFADTH-- 157 (189)
T ss_dssp HHHHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHT--
T ss_pred hHHHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce----eCHHHHHHHHHHc--
Confidence 5566554 4559999999876443332 222233346899999999999976433 2344444444433
Q ss_pred hhcCCCCEEEeecCCC---CCHHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSSVTN---QGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g---~gi~el~~~i~~~~~~ 304 (308)
..+++++||++| +|++++|++|.+.+.+
T Consensus 158 ----~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 158 ----SMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp ----TCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred ----CCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 368999999999 9999999999877643
No 29
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.89 E-value=7.3e-23 Score=172.21 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=111.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +..++..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 93 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER----------YRAITSA 93 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT----------TCTTHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhhHH
Confidence 347999999999999999999999865444445556555555555543 688999999743 2234556
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++..+ +++++|+|++++.+.... .+...+. ..++|+++|+||+|+...+. +..+..+.+.+..
T Consensus 94 ~~~~~---d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 160 (193)
T 2oil_A 94 YYRGA---VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQARE----VPTEEARMFAENN------ 160 (193)
T ss_dssp HHTTC---CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT------
T ss_pred HhccC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccc----cCHHHHHHHHHHc------
Confidence 65544 458999999876543322 1122221 24789999999999976432 2334444443332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.++++++||++|.|+++++++|.+.+.+..
T Consensus 161 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 161 GLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 368999999999999999999998776543
No 30
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.2e-23 Score=175.61 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=113.5
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHH
Q 021764 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
......++|+++|.+|||||||+++|++..+...+.++.+.+.....+..++ .+.+|||||.. .+..
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~ 87 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE----------RFHS 87 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG----------GGGG
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch----------hhHh
Confidence 3334557999999999999999999999876556677788777666666554 68999999953 2333
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021764 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
.+..++..+ +++++|+|++++.+.... ..|+. ..++|+++|+||+|+.+.+. +..+.++++.+.+
T Consensus 88 ~~~~~~~~~---d~iilV~d~~~~~s~~~~--~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----v~~~~~~~~~~~~ 158 (192)
T 2fg5_A 88 LAPMYYRGS---AAAVIVYDITKQDSFYTL--KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----VPLKDAKEYAESI 158 (192)
T ss_dssp GTHHHHTTC---SEEEEEEETTCTHHHHHH--HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHTT
T ss_pred hhHHhhccC---CEEEEEEeCCCHHHHHHH--HHHHHHHHHhCCCCCcEEEEEECcccccccc----cCHHHHHHHHHHc
Confidence 455565544 459999999886554432 22322 24799999999999975332 2334444443332
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|.|+++++++|.+.+.
T Consensus 159 ------~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 159 ------GAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp ------TCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ------CCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 378999999999999999999988654
No 31
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.89 E-value=1.9e-22 Score=168.81 Aligned_cols=161 Identities=20% Similarity=0.227 Sum_probs=112.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE-EEEEEeCC------------CEEEecCCCcccCCCchh
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC-INHFRIND------------SWYLVDLPGYGYAAAPRE 189 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~------------~~~liDtpG~~~~~~~~~ 189 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.+.. ...+..++ .+.+|||||..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------- 81 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE------- 81 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG-------
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH-------
Confidence 34579999999999999999999987654444444454443 33444432 58899999963
Q ss_pred hhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHH
Q 021764 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
.+...+..++.. ++++++|+|++++.+..+. .+...+. ..++|+++|+||+|+.+... +..+.++
T Consensus 82 ---~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~ 151 (195)
T 3bc1_A 82 ---RFRSLTTAFFRD---AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----VKEEEAR 151 (195)
T ss_dssp ---GGHHHHHHTTTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----SCHHHHH
T ss_pred ---HHHHHHHHHHcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc----cCHHHHH
Confidence 344566565544 4569999999876554432 1122121 15899999999999976432 2345555
Q ss_pred HHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 265 DFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
++.+..+ .+++++||++|.|+++++++|.+.+.+..
T Consensus 152 ~~~~~~~------~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 152 ELAEKYG------IPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp HHHHHHT------CCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC------CCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 5555443 68999999999999999999998876544
No 32
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.89 E-value=1.5e-22 Score=165.22 Aligned_cols=155 Identities=16% Similarity=0.223 Sum_probs=107.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||.. ++..++..+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~ 72 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE----------DYAAIRDNY 72 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-------------CHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcc----------hhHHHHHHH
Confidence 36999999999999999999999765333333333332 23344444 68899999953 344567777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..++ ++++|+|+++..+.... ++.......++|+++|+||+|+.+..+ +..+....+.+..+
T Consensus 73 ~~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~----- 140 (168)
T 1u8z_A 73 FRSGE---GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----VSVEEAKNRADQWN----- 140 (168)
T ss_dssp HHHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----SCHHHHHHHHHHHT-----
T ss_pred hhcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCc----cCHHHHHHHHHHcC-----
Confidence 76655 48999999976544332 122222235899999999999976443 23444555544432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|.|+++++++|.+.+.
T Consensus 141 -~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 141 -VNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998764
No 33
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=172.42 Aligned_cols=163 Identities=22% Similarity=0.274 Sum_probs=106.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....++|+++|.+|||||||+++|++..+...+.++.+.+.....+.+++ .+.+|||||.. .+...+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 94 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE----------RFRSIA 94 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT----------TCHHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc----------chhhhH
Confidence 44567999999999999999999999876555566666666555666655 58899999953 344567
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHH-HHHHh---ccCCCCEEEEeecCCCCCccc--CCCCCchhhHHHHHHHHHh
Q 021764 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWL---GQNQIPMTLVFTKCDKRKKKK--NGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~ViD~~~~~~~~~~~-l~~~~---~~~~~pvivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 272 (308)
..++..++ ++++|+|++++.+..+.. +...+ ...++|+++|+||+|+..... ....+..+..+.+.+..+
T Consensus 95 ~~~~~~~d---~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~- 170 (199)
T 2p5s_A 95 KSYFRKAD---GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG- 170 (199)
T ss_dssp HHHHHHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-
T ss_pred HHHHhhCC---EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-
Confidence 77776654 489999998765544321 11112 124799999999999963211 111134445555555443
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++++++||++|+|++++|++|.+.+.
T Consensus 171 -----~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 171 -----ALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp -----CEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred -----CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988764
No 34
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.6e-23 Score=174.95 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=116.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..+||+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+..++.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 90 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE----------RYRTITT 90 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH----------HCHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHH
Confidence 3467999999999999999999998765444555556666665665544 58999999942 4555666
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++..+ +++++|+|+++..+.... .+...+. ..++|+++|+||+|+.+.+. +..+..+.+.+.++
T Consensus 91 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 159 (191)
T 3dz8_A 91 AYYRGA---MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERV----VPTEKGQLLAEQLG---- 159 (191)
T ss_dssp HHHTTC---CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT----
T ss_pred HHHccC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----cCHHHHHHHHHHcC----
Confidence 766654 458999999876544332 1222222 25899999999999976543 24455556655553
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|++++|++|.+.+.+..
T Consensus 160 --~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 160 --FDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred --CeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999876543
No 35
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.89 E-value=7.2e-23 Score=167.86 Aligned_cols=155 Identities=17% Similarity=0.284 Sum_probs=111.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+..++..+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~ 75 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE----------RFRALAPMY 75 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch----------hhhcccHhh
Confidence 36999999999999999999999876555667777777666666654 68899999963 233345555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|++++.+.... .+...+ .....|+++|+||+|+.+..+ +..+..+.+.+.. .
T Consensus 76 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----v~~~~~~~~~~~~------~ 142 (170)
T 1z0j_A 76 YRGS---AAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----VMERDAKDYADSI------H 142 (170)
T ss_dssp HTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----SCHHHHHHHHHHT------T
T ss_pred CcCC---CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccc----cCHHHHHHHHHHc------C
Confidence 5544 458999999876554432 122222 235789999999999986443 2344444444433 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|+++++++|.+.+
T Consensus 143 ~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 143 AIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 7899999999999999999998764
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.89 E-value=2.2e-22 Score=167.48 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=111.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||.. .+..++..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 85 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE----------DYAAIRDN 85 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTT----------CCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCc----------ccHHHHHH
Confidence 346999999999999999999998765333333333322 23344444 58899999953 34456777
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++..++ ++++|+|+++..+.... ++..+....++|+++|+||+|+.+... +..+.+..+.+.+
T Consensus 86 ~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 153 (187)
T 2a9k_A 86 YFRSGE---GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----VSVEEAKNRAEQW----- 153 (187)
T ss_dssp HHHHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----SCHHHHHHHHHHT-----
T ss_pred HhccCC---EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----cCHHHHHHHHHHc-----
Confidence 777655 48999999876543332 222223335899999999999976433 2334444444332
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
..+++++||++|.|+++++++|.+.+.+.+.
T Consensus 154 -~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 154 -NVNYVETSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 3689999999999999999999998876543
No 37
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.89 E-value=2.4e-22 Score=167.75 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=108.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+|+|++..+.....++.+ +.....+..++ .+.+|||||... +..++..|
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 72 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQY 72 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC-------------CTTHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHH----------HHHHHHHH
Confidence 46999999999999999999998764333333322 22233444444 377899999542 23355666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..++ ++++|+|.++..+.... .+..+....+.|+++|+||+|+.+.. +..+..+.+.+.++
T Consensus 73 ~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----~~~~~~~~~~~~~~----- 139 (189)
T 4dsu_A 73 MRTGE---GFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----VDTKQAQDLARSYG----- 139 (189)
T ss_dssp HHHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----SCHHHHHHHHHHHT-----
T ss_pred HhcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc-----cCHHHHHHHHHHcC-----
Confidence 66654 48999999876544332 12222334689999999999998543 24555666665553
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|+++++++|.+.+....
T Consensus 140 -~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 140 -IPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -CeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999887654
No 38
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.89 E-value=2.3e-22 Score=167.96 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=109.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++..+ ..+.++.|.+. ..+.+++ .+.+|||||.. .+...+..|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~ 80 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQGFKLNVWDIGGQR----------KIRPYWRSY 80 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEETTEEEEEEECSSCG----------GGHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEECCEEEEEEECCCCH----------HHHHHHHHH
Confidence 3457999999999999999999998754 45566666443 3444445 78999999953 455567777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+..+ +++++|+|+++..+.... .+..++. ..++|+++|+||+|+..... .+++.+.++.. .
T Consensus 81 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~ 148 (181)
T 1fzq_A 81 FENT---DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---------ASEIAEGLNLHTIR 148 (181)
T ss_dssp HTTC---SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---------HHHHHHHTTGGGCC
T ss_pred hCCC---CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC---------HHHHHHHhCchhcc
Confidence 7654 458999999987655442 2223332 25799999999999976432 23333333211 1
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
....+++++||++|+|++++|++|.+.+.+.+
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (181)
T 1fzq_A 149 DRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 180 (181)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHTC----
T ss_pred CCceEEEEccCCCCCCHHHHHHHHHHHHHhcc
Confidence 12357999999999999999999998876543
No 39
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.4e-22 Score=168.09 Aligned_cols=160 Identities=20% Similarity=0.207 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..++|+++|.+|||||||+++|++..+.. ...++.+.+.....+..++ .+.+|||||.. .+...+.
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~ 78 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE----------RFRSVTH 78 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHH
Confidence 34699999999999999999999976521 2333444444444445555 68999999953 2333444
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++.. ++++++|+|++++.+..+. .+...+. ..++|+++|+||+|+.+... +..+..+.+.+..+
T Consensus 79 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 147 (180)
T 2g6b_A 79 AYYRD---AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----VKREDGEKLAKEYG---- 147 (180)
T ss_dssp CCGGG---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----SCHHHHHHHHHHHT----
T ss_pred HHccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccc----cCHHHHHHHHHHcC----
Confidence 55544 4569999999876544332 1111111 26799999999999986443 23445555554442
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|+++++++|.+.+.+..
T Consensus 148 --~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 148 --LPFMETSAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp --CCEEECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred --CeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999998876543
No 40
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.89 E-value=6.2e-23 Score=168.24 Aligned_cols=157 Identities=21% Similarity=0.276 Sum_probs=105.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++.++.....++.+.+.....+.+++ .+.+|||||... +...+..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~ 72 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER----------FRTITTAY 72 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGG----------TSCCCHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh----------hhhhHHHH
Confidence 46999999999999999999998765443444445445455566554 588999999642 12233445
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+.. ++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.... +..+..+.+.+.++
T Consensus 73 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~------ 138 (170)
T 1g16_A 73 YRG---AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-----VTADQGEALAKELG------ 138 (170)
T ss_dssp HTT---EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----SCHHHHHHHHHHHT------
T ss_pred hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-----cCHHHHHHHHHHcC------
Confidence 443 4569999999876543332 1111111 2479999999999994322 24455555555443
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|.|+++++++|.+.+.+.
T Consensus 139 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 139 IPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999888654
No 41
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.89 E-value=6.2e-23 Score=166.93 Aligned_cols=157 Identities=26% Similarity=0.332 Sum_probs=104.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+++|+++|.+|||||||+++|++... ......++++... ..+..++ .+.+|||||...... ....+...+..+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~ 76 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRS-AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRA 76 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCe-eeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHH
Confidence 36899999999999999999998753 3445566665432 3344444 799999999764321 111223333344
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+ ..++++++|+|++++.+..+..+..++...++|+++|+||+|+.+.. +.++++. .+ + ..+++
T Consensus 77 ~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~-~~----~-~~~~~ 139 (161)
T 2dyk_A 77 L---EDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE--------LYLGPLY-GL----G-FGDPI 139 (161)
T ss_dssp T---TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG--------GGCGGGG-GG----S-SCSCE
T ss_pred H---HhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch--------HhHHHHH-hC----C-CCCeE
Confidence 3 34556999999998877777677777777789999999999997642 1122222 11 1 13799
Q ss_pred EeecCCCCCHHHHHHHHHHHH
Q 021764 282 MTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~ 302 (308)
++||++|+|+++++++|.+.+
T Consensus 140 ~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 140 PTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ECBTTTTBSHHHHHHHHHHHC
T ss_pred EEecccCCChHHHHHHHHHhC
Confidence 999999999999999998753
No 42
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=1.4e-23 Score=174.53 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=109.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+. ...+..++ .+.+|||||..... .++..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~ 73 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYS----------IFPQT 73 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTC----------CCCGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhh----------HHHHH
Confidence 456999999999999999999998766555555655554 44455554 57899999975321 12223
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++.. ++++++|+|.++..+.... ++.......++|+++|+||+|+.+.+. +..+..+.+.+.++
T Consensus 74 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 142 (181)
T 3t5g_A 74 YSID---INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----ISYEEGKALAESWN---- 142 (181)
T ss_dssp GTTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCC----SCHHHHHHHHHHTT----
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcce----ecHHHHHHHHHHhC----
Confidence 3333 4569999999976544432 222233345899999999999975443 34455555555543
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|.|++++|++|.+.+..+
T Consensus 143 --~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 143 --AAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp --CEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred --CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999887653
No 43
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.89 E-value=8.8e-23 Score=167.17 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=108.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+...+..+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~ 75 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE----------RYHSLAPMY 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH----------HhhhhhHHh
Confidence 36999999999999999999998765444556666666555565554 68999999954 233355566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh-c--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL-G--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~-~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|++++.+.... .+...+ . ..+.|+++|+||+|+.+... +..+....+.+.. .
T Consensus 76 ~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----~~~~~~~~~~~~~------~ 142 (170)
T 1r2q_A 76 YRGA---QAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA----VDFQEAQSYADDN------S 142 (170)
T ss_dssp HTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT------T
T ss_pred ccCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccc----cCHHHHHHHHHHc------C
Confidence 5544 458999999876544332 111111 1 25789999999999975432 2333444443332 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|+|+++++++|.+.+
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 143 LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998754
No 44
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.89 E-value=2.7e-22 Score=165.94 Aligned_cols=161 Identities=16% Similarity=0.215 Sum_probs=109.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++..+.....+..+.+.....+.+++ .+.+|||||...... ++.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~-- 73 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT----------MRA-- 73 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC----------SCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH----------HHH--
Confidence 4567999999999999999999999764322112222222223344454 788999999643211 111
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hc----
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQ---- 275 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~---- 275 (308)
.....++++++|+|++++......+....+...++|+++|+||+|+.... .+++...+... +.
T Consensus 74 -~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~ 142 (178)
T 2lkc_A 74 -RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN----------PDRVMQELMEYNLVPEEWG 142 (178)
T ss_dssp -SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC----------HHHHHHHHTTTTCCBTTTT
T ss_pred -HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC----------HHHHHHHHHhcCcChhHcC
Confidence 22345677999999988776666666666666789999999999997532 12222222211 11
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
...+++++||++|+|+++++++|.+.+..++
T Consensus 143 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 143 GDTIFCKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SSEEEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred CcccEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 1258999999999999999999999887654
No 45
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=9.7e-23 Score=180.20 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=115.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+++|+++|.+|||||||+|+|++.. ..+...||+|.. ...+.+++ .+.+|||||+...............+.+.|
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 3689999999999999999999985 456777888754 34555555 799999999864332100000122355566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+.. ..+|++++|+|+++. .....+..++.+.++|+++|+||+|+..... .....+.+.+.++ ++++
T Consensus 79 ~~~-~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~-----~~~~~~~l~~~lg------~~vi 144 (256)
T 3iby_A 79 VID-LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRG-----ISIDTEKLESLLG------CSVI 144 (256)
T ss_dssp HHH-SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTT-----CEECHHHHHHHHC------SCEE
T ss_pred Hhh-CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCC-----cHHHHHHHHHHcC------CCEE
Confidence 543 446789999999873 3334566777778999999999999876443 2233555555553 7999
Q ss_pred EeecCCCCCHHHHHHHHHHH
Q 021764 282 MTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~ 301 (308)
++||++|.|+++++++|.+.
T Consensus 145 ~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 145 PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ECBGGGTBSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999764
No 46
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=1.2e-22 Score=166.38 Aligned_cols=155 Identities=21% Similarity=0.298 Sum_probs=110.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+...+..++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~ 73 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE----------RFASLAPXYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh----------hhhhhhhhhh
Confidence 5899999999999999999999875444556666666666666655 68999999953 2333556666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
..+ +++++|+|++++.+..+. ..|+. ..+.|+++|+||+|+...... ..+..+..+.+.+..+
T Consensus 74 ~~~---d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~v~~~~~~~~~~~~~----- 142 (170)
T 1ek0_A 74 RNA---QAALVVYDVTKPQSFIKA--RHWVKELHEQASKDIIIALVGNKIDXLQEGGE-RKVAREEGEKLAEEKG----- 142 (170)
T ss_dssp TTC---SEEEEEEETTCHHHHHHH--HHHHHHHHHHSCTTCEEEEEEECGGGGGSSCC-CCSCHHHHHHHHHHHT-----
T ss_pred ccC---cEEEEEEecCChHHHHHH--HHHHHHHHHhcCCCCcEEEEEECCCccccccc-cCCCHHHHHHHHHHcC-----
Confidence 544 458999999976554332 22221 257999999999999764221 1134444555544432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|+++++++|.+.+
T Consensus 143 -~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 143 -LLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998654
No 47
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.89 E-value=1.5e-22 Score=168.83 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=109.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+...+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 78 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE----------RFRSVTRS 78 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHHH
Confidence 357999999999999999999998765333333334344445555555 68899999953 34445555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH-HH---HHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLE-YA---SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~-l~---~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++.. ++++++|+|++++.+..... +. ......++|+++|+||+|+..... +..+....+.+..
T Consensus 79 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 145 (186)
T 2bme_A 79 YYRG---AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE----VTFLEASRFAQEN------ 145 (186)
T ss_dssp TSTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT------
T ss_pred HHhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc----cCHHHHHHHHHHc------
Confidence 5543 45699999999765443321 11 112236799999999999975432 2334444443332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.++++++||++|+|++++|++|.+.+...
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 146 ELMFLETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 37899999999999999999999877543
No 48
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.89 E-value=1.8e-22 Score=165.01 Aligned_cols=154 Identities=17% Similarity=0.216 Sum_probs=105.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||... +..++..++
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~ 72 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ----------FTAMRDLYM 72 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCS----------STTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHH----------HHHHHHHHh
Confidence 5899999999999999999998764333333322222 23334443 588999999642 233566666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.+++.+.... .+.......++|+++|+||+|+.+.+. +..+..+.+.+.+. .
T Consensus 73 ~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~ 140 (167)
T 1c1y_A 73 KNGQ---GFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV----VGKEQGQNLARQWC-----N 140 (167)
T ss_dssp HHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHTT-----S
T ss_pred ccCC---EEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc----CCHHHHHHHHHHcc-----C
Confidence 6654 48999999876443332 122222335899999999999976432 23444555444331 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|+++++++|.+.+
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 141 CAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998865
No 49
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=2.4e-22 Score=166.15 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+..++..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE----------RFRSLRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG----------GGHHHHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch----------hhhhhHHH
Confidence 456999999999999999999998765444555556555556666665 68999999953 34445555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
++.. ++++++|+|.+++.+.... ++..... ..++|+++|+||+|+.... +..+.++.+.+..
T Consensus 76 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----~~~~~~~~~~~~~-- 145 (177)
T 1wms_A 76 FYRG---SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----VSTEEAQAWCRDN-- 145 (177)
T ss_dssp GGTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----SCHHHHHHHHHHT--
T ss_pred HHhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-----cCHHHHHHHHHhc--
Confidence 5443 4569999999876544332 1111111 1678999999999997322 2344444444321
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+++++||++|.|+++++++|.+.+.+
T Consensus 146 ---~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 146 ---GDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp ---TCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ---CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 24789999999999999999999887643
No 50
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.89 E-value=9.3e-23 Score=169.24 Aligned_cols=158 Identities=19% Similarity=0.244 Sum_probs=110.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+...+..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 80 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLAPM 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG----------GGGGGTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh----------hhhhhhHH
Confidence 346999999999999999999999865444445556555555555554 68999999953 23334555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++..+ +++++|+|++++.+.... .+...+. ..++|+++|+||+|+.+... +..+.++++.+..
T Consensus 81 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----~~~~~~~~~~~~~------ 147 (181)
T 2efe_B 81 YYRGA---AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK----VTAEDAQTYAQEN------ 147 (181)
T ss_dssp HHTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----SCHHHHHHHHHHT------
T ss_pred HhccC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccccc----CCHHHHHHHHHHc------
Confidence 55544 458999999876554332 1222222 24789999999999976433 2344444444432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|+|+++++++|.+.+..
T Consensus 148 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 148 GLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp TCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999887644
No 51
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=1.1e-22 Score=168.38 Aligned_cols=157 Identities=16% Similarity=0.119 Sum_probs=109.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..++|+++|.+|||||||+++|++..+.....++.+.......+.+++ .+.+|||||... +..++.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI----------GGKMLD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT----------TCTTHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc----------ccchhh
Confidence 346999999999999999999998765444455555555555555543 689999999642 223455
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc-----CCCC-EEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ-----NQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~~-----~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
.|+..+ +++++|+|++++.+..+. .+...+.. ...| +++|+||+|+.+.+. +..+..+.+.+..+
T Consensus 75 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----~~~~~~~~~~~~~~- 146 (178)
T 2hxs_A 75 KYIYGA---QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----IKPEKHLRFCQENG- 146 (178)
T ss_dssp HHHTTC---SEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----SCHHHHHHHHHHHT-
T ss_pred HHHhhC---CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccc----cCHHHHHHHHHHcC-
Confidence 666544 459999999876554332 11121211 2566 899999999976432 23455555555443
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|+|++++|++|.+.+.
T Consensus 147 -----~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 147 -----FSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp -----CEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred -----CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988764
No 52
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.89 E-value=1.7e-21 Score=168.74 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+|+|++..+. ....+++|... ..+..++ .+.+|||||.............+. .+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD--VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT-TIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE--EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH-HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH-HHH
Confidence 45679999999999999999999998643 45556655543 3334444 799999999854221110000011 222
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhH---HHHHHHhccC--CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPID---LEYASWLGQN--QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~---~~l~~~~~~~--~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++ ...+++++|+|+++..+... ..+...+... ++|+++|+||+|+..... +..+..+.+.+... ..
T Consensus 104 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~-~~ 175 (228)
T 2qu8_A 104 ALA---HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----LSIDNKLLIKQILD-NV 175 (228)
T ss_dssp HHH---TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----CCHHHHHHHHHHHH-HC
T ss_pred Hhh---ccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----hHHHHHHHHHHHHH-hc
Confidence 332 33456999999998766432 2333334333 899999999999986543 12222222333222 21
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
....+++++||++|+|++++|++|.+.+...
T Consensus 176 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 176 KNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 1126899999999999999999999887654
No 53
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.89 E-value=2.4e-22 Score=170.14 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=105.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHH-H
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDK-F 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~-~ 197 (308)
....++|+++|.+|||||||+++|++........+..+.+.....+.+++ .+.+|||||... +.. +
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----------~~~~~ 89 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD----------AGGWL 89 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG----------GGHHH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc----------chhhh
Confidence 34567999999999999999999986432111122222233334455555 578899999642 222 4
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHh-c---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWL-G---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~-~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
...|+..+ +++++|+|.++..+.... .+...+ . ..++|+++|+||+|+.+.+. +..+..+.+.+.+
T Consensus 90 ~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~a~~~-- 160 (195)
T 3cbq_A 90 RDHCLQTG---DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE----VSLEEGRHLAGTL-- 160 (195)
T ss_dssp HHHHHHHC---SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----SCHHHHHHHHHHT--
T ss_pred HHHhhccC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCC----cCHHHHHHHHHHh--
Confidence 55566554 458999999876544332 111111 1 14799999999999976443 2344455554433
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|++|.+.+..
T Consensus 161 ----~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 161 ----SCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp ----TCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred ----CCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 2689999999999999999999987754
No 54
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=9.7e-22 Score=186.72 Aligned_cols=172 Identities=23% Similarity=0.335 Sum_probs=115.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCch-hhhhchHHH-H
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPR-ELRTDWDKF-T 198 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~-~~~~~~~~~-~ 198 (308)
..++|+|+|++|||||||+|+|++..+ ..+++.+|+|++. ..+.+++ .+.+|||||+....... +....+... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 457999999999999999999999764 5688899988764 4455666 78999999985422110 000111111 1
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--C
Q 021764 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--T 276 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 276 (308)
..++.. ++++++|+|++.+.+..+..+..++...++|+++|+||||+.+... ...+++.+.+...+. .
T Consensus 258 ~~~i~~---ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~ 327 (439)
T 1mky_A 258 VDSIEK---ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHRE-------KRYDEFTKLFREKLYFID 327 (439)
T ss_dssp HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGG-------GCHHHHHHHHHHHCGGGT
T ss_pred HHHHhh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchh-------hHHHHHHHHHHHHhccCC
Confidence 233333 3558999999988888777777777778999999999999976432 112333333322221 3
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|.|++++++.+.+.+..+.
T Consensus 328 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 328 YSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp TSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 478999999999999999999999887764
No 55
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.89 E-value=3e-22 Score=168.76 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=107.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC--------------------------------
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-------------------------------- 170 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------------------------- 170 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.......+.++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 345799999999999999999999986543344444444433333332
Q ss_pred --------CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHH-HH-HHhccCCCCEE
Q 021764 171 --------DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE-YA-SWLGQNQIPMT 240 (308)
Q Consensus 171 --------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~-l~-~~~~~~~~pvi 240 (308)
..+.+|||||... +...+..++..+ +++++|+|++++.+..+.. +. .+....++|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~---d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQER----------YASIVPLYYRGA---TCAIVVFDISNSNTLDRAKTWVNQLKISSNYIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGG----------CTTTHHHHHTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cccCccceeEEEEEECCCcHH----------HHHHHHHHhcCC---CEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 3578999999542 223455655544 4599999999875544421 11 22222459999
Q ss_pred EEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 241 LVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 241 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+|+||+| ..... +..+.++++.+.. ..+++++||++|.|+++++++|.+.+.+..
T Consensus 152 lv~NK~D-~~~~~----~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 152 LVANKID-KNKFQ----VDILEVQKYAQDN------NLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp EEEECTT-CC-CC----SCHHHHHHHHHHT------TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEECCC-ccccc----CCHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999 32221 2334444444332 368999999999999999999998876654
No 56
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.89 E-value=1.5e-22 Score=173.54 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-------------CCEEEecCCCcccCCCchh
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-------------DSWYLVDLPGYGYAAAPRE 189 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~~~~liDtpG~~~~~~~~~ 189 (308)
+..++|+|+|.+|||||||+++|++..+.....++.+.+.....+.++ ..+.+|||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------- 95 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------- 95 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-------
Confidence 345799999999999999999999876533333333322222333332 258999999942
Q ss_pred hhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-------CCCCEEEEeecCCCCCcccCCCCCchhh
Q 021764 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-------NQIPMTLVFTKCDKRKKKKNGGKRPEEN 262 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~-------~~~pvivV~NK~Dl~~~~~~~~~~~~~~ 262 (308)
.+..++..++..+ +++++|+|+++..+..+. ..|+.. .++|+++|+||+|+..... +..+.
T Consensus 96 ---~~~~~~~~~~~~~---d~iilV~D~~~~~s~~~~--~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----v~~~~ 163 (217)
T 2f7s_A 96 ---RFRSLTTAFFRDA---MGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----VNERQ 163 (217)
T ss_dssp ---HHHHHHHHHHTTC---CEEEEEEETTCHHHHHHH--HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----SCHHH
T ss_pred ---hHHhHHHHHhcCC---CEEEEEEECcCHHHHHHH--HHHHHHHHHhcCcCCCCEEEEEECCccccccc----cCHHH
Confidence 4555666666544 459999999876554432 344432 5789999999999976433 23445
Q ss_pred HHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 263 LNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++++.+.+ ..+++++||++|.|+++++++|.+.+.+.
T Consensus 164 ~~~~~~~~------~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 164 ARELADKY------GIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp HHHHHHHT------TCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC------CCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 55555443 37899999999999999999999887654
No 57
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=170.77 Aligned_cols=160 Identities=18% Similarity=0.246 Sum_probs=104.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCC-cceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRK-KLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...++|+++|.+|||||||+++|++.. +.....++.+ .....+.+++ .+.+|||||... +..++..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 86 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSSLSFTVFDMSGQGR----------YRNLWEH 86 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSSCEEEEEEECCSTT----------TGGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECCEEEEEEECCCCHH----------HHHHHHH
Confidence 445799999999999999999999875 2333333333 3444555555 799999999642 2224444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH-h
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ-G 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~ 272 (308)
++..+ +++++|+|++++.+.... .+..++.. .++|+++|+||+|+.... . .+++.+.+. .
T Consensus 87 ~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~---~~~~~~~~~~~ 154 (190)
T 2h57_A 87 YYKEG---QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV------T---SVKVSQLLCLE 154 (190)
T ss_dssp GGGGC---SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC------C---HHHHHHHHTGG
T ss_pred HHhcC---CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC------C---HHHHHHHhChh
Confidence 54443 569999999876444332 22233332 579999999999997532 2 233333332 1
Q ss_pred hh-cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 273 FF-QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 273 ~~-~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+ ....+++++||++|+|+++++++|.+.++++.
T Consensus 155 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 155 NIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp GCCSSCEEEEECBTTTTBTHHHHHHHHHHHC----
T ss_pred hccCCceEEEEccCCCCcCHHHHHHHHHHHHHHhc
Confidence 11 23468999999999999999999999887654
No 58
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.88 E-value=9.6e-23 Score=166.78 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=109.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||... +..++..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE----------FDAITKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG----------TTCCCHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh----------HHHHHHH
Confidence 346999999999999999999999765444455555555555555554 689999999542 2223445
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++.. ++++++|+|++++.+.... ..|+. ..+.|+++|+||+|+.+.+. +..+.++.+.+.++
T Consensus 74 ~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 140 (168)
T 1z2a_A 74 YYRG---AQACVLVFSTTDRESFEAI--SSWREKVVAEVGDIPTALVQNKIDLLDDSC----IKNEEAEGLAKRLK---- 140 (168)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTH--HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----SCHHHHHHHHHHHT----
T ss_pred HhcC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECcccCcccc----cCHHHHHHHHHHcC----
Confidence 5544 3559999999876543332 22222 15799999999999976433 23455555555443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|.|+++++++|.+.+.
T Consensus 141 --~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 141 --LRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp --CEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred --CeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 68999999999999999999988764
No 59
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.6e-22 Score=169.79 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=110.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +..++..+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 84 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER----------FRTLTPSY 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG----------GCCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh----------hhhhhHHH
Confidence 46999999999999999999999876545556666666666666654 589999999642 22345566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..+ +++++|+|++++.+.... .+...+. ..++|+++|+||+|+.... +..+....+.+..
T Consensus 85 ~~~~---d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~------ 150 (195)
T 1x3s_A 85 YRGA---QGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-----VDRNEGLKFARKH------ 150 (195)
T ss_dssp HTTC---CEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----SCHHHHHHHHHHT------
T ss_pred hccC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----cCHHHHHHHHHHc------
Confidence 5544 459999999876544332 1122222 2478999999999995422 2334444444332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|+++++++|.+.+.+
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 151 SMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999987754
No 60
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=5.4e-22 Score=162.96 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=107.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..++|+++|.+|||||||+++|++..+. ...++.+ .....+.+++ .+.+|||||... +..++..++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~~~~ 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKNLKFQVWDLGGLTS----------IRPYWRCYY 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETTEEEEEEEECCCGG----------GGGGGGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECCEEEEEEECCCChh----------hhHHHHHHh
Confidence 3469999999999999999999987642 2333333 3344455555 799999999642 222344444
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hc
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 275 (308)
. .++++++|+|++++.+.... .+..++.. .++|+++|+||+|+.+... .+++.+.+... ..
T Consensus 73 ~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~ 140 (171)
T 1upt_A 73 S---NTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT---------SSEMANSLGLPALKD 140 (171)
T ss_dssp T---TCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHHTGGGCTT
T ss_pred c---cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---------HHHHHHHhCchhccC
Confidence 3 45669999999988665443 23333332 6899999999999976432 23333333221 11
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+++++||++|+|+++++++|.+.+.+
T Consensus 141 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 141 RKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 23579999999999999999999988753
No 61
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.88 E-value=2.4e-22 Score=168.75 Aligned_cols=158 Identities=17% Similarity=0.119 Sum_probs=107.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.++|+++|.+|||||||+++|++.++.....++.+.+. ..+..++ .+.+|||||.. ++..++..++.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~ 89 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGNVTIKLWDIGGQP----------RFRSMWERYCR 89 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETTEEEEEEEECCSH----------HHHTTHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEeCCEEEEEEECCCCH----------hHHHHHHHHHc
Confidence 46999999999999999999998765433444444433 3344444 78999999953 34445666664
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cC
Q 021764 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QT 276 (308)
Q Consensus 204 ~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 276 (308)
. ++++++|+|+++..+.... .+..++. ..++|+++|+||+|+..... .+++.+.+.... ..
T Consensus 90 ~---~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~ 157 (188)
T 1zd9_A 90 G---VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD---------EKELIEKMNLSAIQDR 157 (188)
T ss_dssp T---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC---------HHHHHHHTTGGGCCSS
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC---------HHHHHHHhChhhhccC
Confidence 4 4559999999986555442 2233333 26899999999999976421 233333332211 13
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|.|+++++++|.+.+.+++
T Consensus 158 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 187 (188)
T 1zd9_A 158 EICCYSISCKEKDNIDITLQWLIQHSKSRR 187 (188)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHTCC---
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 467999999999999999999998776543
No 62
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.88 E-value=1.2e-22 Score=166.74 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +..++..+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 75 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER----------FHALGPIY 75 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CCS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHh----------hhhhHHHH
Confidence 46999999999999999999998765444444555555445566554 588999999542 22233333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+. .++++++|+|++++.+.... ..|+. ..++|+++|+||+|+.+.+. +..+..+.+.+.+
T Consensus 76 ~~---~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 141 (170)
T 1z08_A 76 YR---DSNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEKERH----VSIQEAESYAESV----- 141 (170)
T ss_dssp ST---TCSEEEEEEETTCHHHHHHH--HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----SCHHHHHHHHHHT-----
T ss_pred hc---cCCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCeEEEEEECcccccccc----cCHHHHHHHHHHc-----
Confidence 33 44669999999876544332 22221 25799999999999976433 2344455544433
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|.|+++++++|.+.+.
T Consensus 142 -~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 142 -GAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp -TCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -CCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999988764
No 63
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.88 E-value=7.9e-22 Score=165.34 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=109.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHH
Q 021764 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
++...+||+++|.+|||||||+++|++..+.....++ .......+.+++ .+.+|||||.. .+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~-- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE--GGRFKKEIVVDGQSYLLLIRDEGGPP----------ELQ-- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT--CEEEEEEEEETTEEEEEEEEECSSSC----------CHH--
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC--cceEEEEEEECCEEEEEEEEECCCCh----------hhh--
Confidence 3445679999999999999999999998754333333 222234555555 57789999963 222
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~~----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
|+..+ +++++|+|.++..+..+. .+...+.. .+.|+++|+||+|+...... .+..+.++++.+.++
T Consensus 82 ---~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~v~~~~~~~~~~~~~- 152 (184)
T 3ihw_A 82 ---FAAWV---DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPR--VIDDSRARKLSTDLK- 152 (184)
T ss_dssp ---HHHHC---SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCC--CSCHHHHHHHHHHTT-
T ss_pred ---eecCC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccc--ccCHHHHHHHHHHcC-
Confidence 44544 458999999987655542 22222221 47899999999999632221 134455555555442
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021764 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
..+++++||++|+|++++|++|.+.+.+.++
T Consensus 153 ----~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 153 ----RCTYYETCATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp ----TCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred ----CCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999998877654
No 64
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.88 E-value=1.9e-22 Score=167.20 Aligned_cols=164 Identities=17% Similarity=0.236 Sum_probs=105.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.....+.++ + .+.+|||||.. .+...+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 75 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE----------RFQSLG 75 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh----------Hhhhhh
Confidence 445799999999999999999999976544444555555555555554 2 58999999953 233344
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021764 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
..++. .++++++|+|++++.+.... ++..... ..++|+++|+||+|+..... .+..+....+.+..
T Consensus 76 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~v~~~~~~~~~~~~ 149 (182)
T 1ky3_A 76 VAFYR---GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---IVSEKSAQELAKSL 149 (182)
T ss_dssp -CCST---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---CSCHHHHHHHHHHT
T ss_pred HHHhh---cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---cCCHHHHHHHHHhc
Confidence 44443 44669999999876544332 1111111 16789999999999964322 12344444444321
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021764 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
...+++++||++|+|+++++++|.+.+.+.++
T Consensus 150 -----~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 150 -----GDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp -----TSCCEEEEBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred -----CCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 24789999999999999999999998876554
No 65
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=5.1e-22 Score=169.34 Aligned_cols=159 Identities=22% Similarity=0.288 Sum_probs=110.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +...+.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 87 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER----------FRTITT 87 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG----------GTCCCH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHH
Confidence 4457999999999999999999998765444445555555555666665 689999999642 222344
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++.. ++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.... +..+..+.+.+.++
T Consensus 88 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~---- 155 (213)
T 3cph_A 88 AYYRG---AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-----VTADQGEALAKELG---- 155 (213)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-----SCHHHHHHHHHHHT----
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-----cCHHHHHHHHHHcC----
Confidence 55544 4559999999876543332 1111111 2478999999999994322 24455555555443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++++++||++|.|+++++++|.+.+.+.
T Consensus 156 --~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 156 --IPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp --CCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999887654
No 66
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.88 E-value=4.6e-23 Score=171.69 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +..++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 76 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTA 76 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh----------hhhhHHH
Confidence 346999999999999999999998754333333334444444555554 689999999642 2223334
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
++. .++++++|+|++++.+.... ..|+. ..++|+++|+||+|+.+.+. +..+.++.+.+.++
T Consensus 77 ~~~---~~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~~--- 144 (183)
T 2fu5_C 77 YYR---GAMGIMLVYDITNEKSFDNI--RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----VSKERGEKLALDYG--- 144 (183)
T ss_dssp TTT---TCSEEEEEEETTCHHHHHHH--HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----SCHHHHHHHHHHHT---
T ss_pred HHh---cCCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCCEEEEEECccCCccCc----CCHHHHHHHHHHcC---
Confidence 443 34569999999986544332 22322 24789999999999976433 24455566655543
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|+|++++|++|.+.+...
T Consensus 145 ---~~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 145 ---IKFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp ---CEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999877654
No 67
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.88 E-value=2e-22 Score=171.33 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=110.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.... ..++..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTITSS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH----------HHHHHH
Confidence 357999999999999999999999865444445555555555666655 6899999996431 112333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH-HHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLE-YASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~-l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++. .++++++|+|++++.+..... +...+ ...+.|+++|+||+|+.+.+. +..+....+.+..
T Consensus 77 ~~~---~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 143 (206)
T 2bcg_Y 77 YYR---GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----VEYDVAKEFADAN------ 143 (206)
T ss_dssp GGT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----SCHHHHHHHHHHT------
T ss_pred hcc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----cCHHHHHHHHHHc------
Confidence 443 345699999999765544321 11111 125789999999999986433 2334444444332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|.|++++|++|.+.+.+.
T Consensus 144 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 144 KMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 37899999999999999999999887654
No 68
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.88 E-value=5.3e-22 Score=162.05 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=104.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
+||+++|.+|||||||+++|++..+.. . .|........+..++ .+.+|||||.. .+..++..++..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~~ 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYFQN 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-C--CCCSSCCEEEEECSSCEEEEEECCCCG----------GGHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-c--cCcCceeEEEEEECCEEEEEEEcCCCh----------hhHHHHHHHhcc
Confidence 489999999999999999999876432 2 333223333444444 79999999963 455566666654
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCC
Q 021764 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTA 277 (308)
Q Consensus 205 ~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 277 (308)
+ +++++|+|++++.+.... .+..++. ..+.|+++|+||+|+.+... .+++.+.+.... ...
T Consensus 68 ~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~ 135 (164)
T 1r8s_A 68 T---QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRHRN 135 (164)
T ss_dssp C---SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGGCSSCC
T ss_pred C---CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC---------HHHHHHHhCcccccCcc
Confidence 4 558999999987655432 2222222 24799999999999975321 233333332211 123
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.|+++++++|.+.+.+
T Consensus 136 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 136 WYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 579999999999999999999987654
No 69
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.88 E-value=2.2e-22 Score=166.31 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=107.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+...+..++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~~ 84 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLIPSYI 84 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH----------HHHHHHHHHh
Confidence 6999999999999999999998765433344444444445555555 68999999953 2333455666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
..+ +++++|+|++++.+.... .+...+ ...++|+++|+||+|+.+... +..+....+.+.. ..
T Consensus 85 ~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~------~~ 151 (179)
T 2y8e_A 85 RDS---TVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----VSTEEGERKAKEL------NV 151 (179)
T ss_dssp HTC---SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----SCHHHHHHHHHHH------TC
T ss_pred cCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCc----CCHHHHHHHHHHc------CC
Confidence 554 458999999875443322 111111 125799999999999976443 2334444444443 27
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 279 PWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++++||++|+|+++++++|.+.+..
T Consensus 152 ~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 152 MFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999999886543
No 70
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.2e-21 Score=165.30 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=110.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++.++.....++.+... ...+.+++ .+.+|||||... ..++.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 93 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-----------TIQRE 93 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-----------CHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-----------ccchh
Confidence 3457999999999999999999999865433334444332 23344444 588999999753 12555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++..++ ++++|+|++++.+..+. .+.......++|+++|+||+|+.+.+. +..+....+.+.++
T Consensus 94 ~~~~~~d---~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~~~~~~~--- 163 (196)
T 2atv_A 94 GHMRWGE---GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----VSTEEGEKLATELA--- 163 (196)
T ss_dssp HHHHHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----SCHHHHHHHHHHHT---
T ss_pred hhhccCC---EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccc----cCHHHHHHHHHHhC---
Confidence 6666654 48999999876544332 112222236899999999999976433 24455555555442
Q ss_pred cCCCCEEEeecCCCC-CHHHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQ-GRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~-gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|. |++++|++|.+.+.+.+
T Consensus 164 ---~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 164 ---CAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp ---SEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred ---CeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 789999999999 99999999998876543
No 71
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=4.3e-22 Score=163.80 Aligned_cols=157 Identities=24% Similarity=0.296 Sum_probs=103.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+ .....+++|.. ...+.+++ .+.+|||||........ ....+...|+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~~~~~ 77 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV--YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDYI 77 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS--SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS----HHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe--eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc----hhHHHHHHHH
Confidence 5899999999999999999998753 23445555443 33455544 78999999976422111 1123555666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
... .++++++|+|+++... ...+...+...++|+++|+||+|+...... . ...+.+.+.++ .++++
T Consensus 78 ~~~-~~~~~i~v~D~~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~-~~~~~~~~~~~------~~~~~ 143 (165)
T 2wji_A 78 INE-KPDLVVNIVDATALER--NLYLTLQLMEMGANLLLALNKMDLAKSLGI----E-IDVDKLEKILG------VKVVP 143 (165)
T ss_dssp HHH-CCSEEEEEEETTCHHH--HHHHHHHHHHTTCCEEEEEECHHHHHHTTC----C-CCHHHHHHHHT------SCEEE
T ss_pred hcC-CCCEEEEEecCCchhH--hHHHHHHHHhcCCCEEEEEEchHhccccCh----h-hHHHHHHHHhC------CCEEE
Confidence 532 3467999999986321 122333334468999999999998754321 1 23455555543 68999
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 021764 283 TSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~ 302 (308)
+||++|+|++++|++|.+.+
T Consensus 144 ~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 144 LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CBGGGTBSHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=4.5e-22 Score=163.22 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=105.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+|+|++..+.....++.+.+.. ..+..++ .+.+|||||.. .+..++..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH----------QFPAMQRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCS----------SCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCch----------hhHHHHHHh
Confidence 368999999999999999999987643333333333222 2233333 58899999964 344466666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+..++ ++++|+|++++.+.... .+...+.. .++|+++|+||+|+.+.++ +..+..+.+.+..
T Consensus 72 ~~~~~---~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----v~~~~~~~~~~~~----- 139 (172)
T 2erx_A 72 ISKGH---AFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----VQSSEAEALARTW----- 139 (172)
T ss_dssp HHHCS---EEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----SCHHHHHHHHHHH-----
T ss_pred cccCC---EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccc----cCHHHHHHHHHHh-----
Confidence 66644 48999999875443321 12222221 4799999999999976543 2334444444433
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|+++++++|.+.+..
T Consensus 140 -~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 140 -KCAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp -TCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred -CCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 2689999999999999999999887643
No 73
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=9.5e-22 Score=164.66 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=107.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|+++++. .+.++.+.+. ..+.+++ .+.+|||||... +..++..+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 80 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINNTRFLMWDIGGQES----------LRSSWNTY 80 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETTEEEEEEECCC--------------CGGGHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECCEEEEEEECCCCHh----------HHHHHHHH
Confidence 34579999999999999999999987664 4555555432 3344455 799999999642 22345555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+.. ++++++|+|++++.+.... .+..+.. ..++|+++|+||+|+.+.. . .+++.+.+... .
T Consensus 81 ~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---~~~i~~~~~~~~~~ 148 (187)
T 1zj6_A 81 YTN---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM------T---VAEISQFLKLTSIK 148 (187)
T ss_dssp HTT---CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------C---HHHHHHHHTGGGCC
T ss_pred hcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC------C---HHHHHHHhChhhhc
Confidence 544 4569999999988665543 2223332 2689999999999997532 1 22333333221 1
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
....+++++||++|+|+++++++|.+.+..
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 149 DHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp SSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 234689999999999999999999987643
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.88 E-value=1.9e-21 Score=158.25 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=105.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+.....++.+.. ....+..++ .+.+|||||.. ++..++..++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~ 72 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQE----------EYSAMRDQYM 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCS----------SCCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCch----------hhhHHHHHhh
Confidence 589999999999999999999876433333333322 223344444 47899999954 2334666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-H----HHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDL-E----YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~-~----l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|+++..+..+. . +.......++|+++|+||+|+.... ...+..+++.+..+
T Consensus 73 ~~~~---~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~------ 138 (166)
T 2ce2_X 73 RTGE---GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-----VESRQAQDLARSYG------ 138 (166)
T ss_dssp HHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----SCHHHHHHHHHHHT------
T ss_pred ccCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----cCHHHHHHHHHHcC------
Confidence 6554 48999999875443332 1 1112222479999999999998632 24455566655543
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|.|+++++++|.+.+.
T Consensus 139 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 139 IPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998764
No 75
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.88 E-value=1.6e-21 Score=161.67 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|++..+.. ..++.+... ...+.+++ .+.+|||||... ..|
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~---------------~~~ 69 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD---------------AKF 69 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC---------------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch---------------hHH
Confidence 4699999999999999999999987643 445555433 34445554 578999999542 234
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~-l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+..+ +++++|+|.+++.+..+.. +..++.. .++|+++|+||+|+...... .+..+.++.+.+.+.
T Consensus 70 ~~~~---d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~--~v~~~~~~~~~~~~~--- 141 (178)
T 2iwr_A 70 SGWA---DAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPR--VVGDARARALXADMK--- 141 (178)
T ss_dssp HHHC---SEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCC--CSCHHHHHHHHHHHS---
T ss_pred HHhC---CEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccC--cCCHHHHHHHHHhhc---
Confidence 5544 4589999999876555432 2223321 47899999999999532211 134455555554442
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|+|++++|++|.+.+....
T Consensus 142 --~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 142 --RCSYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp --SEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 368999999999999999999998776544
No 76
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.88 E-value=3.1e-22 Score=169.91 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=103.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+..++..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE----------RFRSVTRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHH----------HHSCCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH----------hHHHHHHH
Confidence 346999999999999999999998765444444445555555555655 68999999953 22223445
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHh------ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWL------GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~------~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
++.. ++++++|+|++++.+.... ..|+ ...++|+++|+||+|+..... +..+....+.+..
T Consensus 94 ~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~---- 160 (200)
T 2o52_A 94 YYRG---AAGALLVYDITSRETYNSL--AAWLTDARTLASPNIVVILCGNKKDLDPERE----VTFLEASRFAQEN---- 160 (200)
T ss_dssp HHTT---CSEEEEEEETTCHHHHHTH--HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT----
T ss_pred Hhcc---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCcEEEEEECCCcccccc----cCHHHHHHHHHHc----
Confidence 5554 3559999999876544332 2222 125799999999999975432 2333444443332
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|.|++++|++|.+.+...
T Consensus 161 --~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 161 --ELMFLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp --TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 37899999999999999999999877554
No 77
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.87 E-value=8.4e-23 Score=173.30 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=105.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||..... .++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 89 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYS----------ILP 89 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTC----------CCC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchH----------HHH
Confidence 34567999999999999999999999865433333333222 22233322 57899999964321 122
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021764 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..++.. ++++++|+|+++..+.... .+...+. ..++|+++|+||+|+..... +..+..+.+.+.++
T Consensus 90 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~~-- 160 (201)
T 3oes_A 90 YSFIIG---VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----VQAVEGKKLAESWG-- 160 (201)
T ss_dssp GGGTTT---CCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCC----SCHHHHHHHHHHHT--
T ss_pred HHHHhc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccc----cCHHHHHHHHHHhC--
Confidence 333333 4569999999976544332 1111121 24789999999999986543 34455556655553
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|.|++++|++|.+.+.+.
T Consensus 161 ----~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 161 ----ATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp ----CEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred ----CeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999999887653
No 78
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.87 E-value=1.5e-21 Score=163.53 Aligned_cols=157 Identities=18% Similarity=0.263 Sum_probs=102.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+......+.+.. ....+..++ .+.+|||||.. .+..++..+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~ 89 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQE----------EYSAMRDQY 89 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC---------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChH----------HHHHHHHHh
Confidence 3699999999999999999999876433223332222 223444444 48899999954 233355555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+.. ++++++|+|.++..+..+. .+..+....++|+++|+||+|+.... +..+.++++.+.++
T Consensus 90 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~----- 156 (190)
T 3con_A 90 MRT---GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----VDTKQAHELAKSYG----- 156 (190)
T ss_dssp CTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----SCHHHHHHHHHHHT-----
T ss_pred hCc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----CCHHHHHHHHHHcC-----
Confidence 544 4458999999876544332 11112222579999999999997632 24455566655543
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
++++++||++|.|+++++++|.+.+.+.+
T Consensus 157 -~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 157 -IPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred -CeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999887654
No 79
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.87 E-value=5.1e-22 Score=165.59 Aligned_cols=155 Identities=16% Similarity=0.166 Sum_probs=106.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
....++|+++|.+|||||||+++|++.++ ..+.++.+.+. ..+.+++ .+.+|||||... +..++..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 84 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINNTRFLMWDIGGQES----------LRSSWNT 84 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETTEEEEEEEESSSGG----------GTCGGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECCEEEEEEECCCCHh----------HHHHHHH
Confidence 34457999999999999999999999876 55666666543 3344455 799999999642 2223444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-- 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-- 273 (308)
++. .++++++|+|+++..+.... .+..++. ..++|+++|+||+|+.... . .+++.+.+...
T Consensus 85 ~~~---~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---~~~i~~~~~~~~~ 152 (181)
T 2h17_A 85 YYT---NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM------T---VAEISQFLKLTSI 152 (181)
T ss_dssp GGT---TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------C---HHHHHHHTTGGGC
T ss_pred Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC------C---HHHHHHHhCcccc
Confidence 444 34569999999988666543 2233333 2689999999999997632 1 22333333211
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021764 274 FQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....++++++||++|+|+++++++|.+.
T Consensus 153 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 153 KDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred cCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 1123589999999999999999998753
No 80
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.87 E-value=1e-21 Score=164.12 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++.+ .....++.+. ....+.+++ .+.+|||||.. ++...+..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~ 82 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHRGFKLNIWDVGGQK----------SLRSYWRNY 82 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEETTEEEEEEEECCSH----------HHHTTGGGG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEECCEEEEEEECCCCH----------hHHHHHHHH
Confidence 456799999999999999999999876 3344444443 334445555 79999999963 222233333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+ ..++++++|+|++++.+..+. .+...+. ..++|+++|+||+|+.+... .+++.+.+... .
T Consensus 83 ~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~ 150 (186)
T 1ksh_A 83 F---ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS---------CNAIQEALELDSIR 150 (186)
T ss_dssp C---TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGGCC
T ss_pred h---cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC---------HHHHHHHhChhhcc
Confidence 3 345669999999987665442 2222322 25799999999999976432 23333333211 1
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
....+++++||++|+|+++++++|.+.+.+
T Consensus 151 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 151 SHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 234689999999999999999999987753
No 81
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=2e-21 Score=184.59 Aligned_cols=162 Identities=23% Similarity=0.259 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+|+|.||||||||+|+|++.+. +.+.+.||+|++. ..+.+++ .+.+|||||+..... ..+...+......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc-chHHHHHHHHHHHHH
Confidence 6899999999999999999999753 5678899998763 4455555 799999999864221 111223344455555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.. +|++++|+|++.+.+..+..+..|+...++|+++|+||+|+.+.. .... ..+.. . ++ ..++++
T Consensus 80 ~~---ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~-------~~~~--~~~~~-~-lg-~~~~~~ 144 (439)
T 1mky_A 80 RE---ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF-------EREV--KPELY-S-LG-FGEPIP 144 (439)
T ss_dssp TT---CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH-------HHHT--HHHHG-G-GS-SCSCEE
T ss_pred Hh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-------HHHH--HHHHH-h-cC-CCCEEE
Confidence 44 456999999999888888788888877789999999999975310 1111 01111 1 11 136899
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 021764 283 TSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+||++|.|+++++++|.+.+.+
T Consensus 145 iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 145 VSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeccCCCCHHHHHHHHHHhccc
Confidence 9999999999999999887754
No 82
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.87 E-value=3.7e-22 Score=168.17 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=108.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.. ..+..++ .+.+|||||... +..++.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 89 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEE----------YDRLRP 89 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGG----------GTTTGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHH----------HHHHhH
Confidence 34469999999999999999999998653333333333222 2333444 468999999532 222333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++. .++++++|+|++++.+..+. .+...+. ..++|+++|+||+|+.+.... .+..+..+++.+.++
T Consensus 90 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~---- 160 (194)
T 3reg_A 90 LSYA---DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD--DVTKQEGDDLCQKLG---- 160 (194)
T ss_dssp GGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTT--CCCHHHHHHHHHHHT----
T ss_pred hhcc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCC--cccHHHHHHHHHhcC----
Confidence 4443 34569999999987555442 2222222 247999999999999854221 134556666666654
Q ss_pred CCCC-EEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 276 TAPP-WIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~-~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+ ++++||++|+|++++|++|.+.+..
T Consensus 161 --~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 161 --CVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp --CSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred --CCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 45 9999999999999999999987754
No 83
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.4e-21 Score=164.62 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=107.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.. ..+..++ .+.+|||||.. .+..++.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 74 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSH----------QFPAMQR 74 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGG----------SCHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChH----------HhHHHHH
Confidence 45579999999999999999999987653333333333322 2233333 68899999953 3445666
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.++..++ ++++|+|++++.+.... .+..++. ..++|+++|+||+|+.... +..+....+.+.++
T Consensus 75 ~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~-- 144 (199)
T 2gf0_A 75 LSISKGH---AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----VDTREAQAVAQEWK-- 144 (199)
T ss_dssp HHHHHCS---EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----SCHHHHHHHHHHHT--
T ss_pred HhhccCC---EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----cCHHHHHHHHHHhC--
Confidence 7766654 48999999875443322 1222221 1478999999999997532 23444555544443
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.|+++++++|.+.+.+
T Consensus 145 ----~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 145 ----CAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp ----CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred ----CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999999999987643
No 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.87 E-value=1.1e-22 Score=174.45 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=107.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
...++|+++|.+|||||||+|+|++..+......+.+.+.....+...+ .+.+|||||..... .+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA----------VLK 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS----------CCC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc----------hHH
Confidence 3457999999999999999999998776556667777665544444332 48899999964321 133
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-HHHH---HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-EYAS---WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~---~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
..++.. ++++++|+|++++.+..+. .+.. .....++|+++|+||+|+.+... +..+....+.+.
T Consensus 79 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~----- 146 (218)
T 4djt_A 79 DVYYIG---ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----ISKKLVMEVLKG----- 146 (218)
T ss_dssp HHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--------CCHHHHHHHTTT-----
T ss_pred HHHhhc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----cCHHHHHHHHHH-----
Confidence 344444 4559999999987554443 1111 11234689999999999976432 122222222221
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
...+++++||++|.|+++++++|.+.+..+
T Consensus 147 -~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 147 -KNYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp -CCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred -cCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 247899999999999999999999987654
No 85
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.87 E-value=7.7e-22 Score=165.67 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=105.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+||+++|.+|||||||+++|++..+...+.++.+... ...+.+++ .+.+|||||..... .+ .
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~-~ 86 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPR----------NC-E 86 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CC----------CT-H
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcch----------hH-H
Confidence 3446999999999999999999999865444444444333 22334444 57899999964211 12 3
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHH-HHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~~-l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
.|+..+ +++++|+|.++..+..... +...+.. .++|+++|+||+|+.+.+. +..+..+++.+.++
T Consensus 87 ~~~~~~---~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~~- 158 (187)
T 3c5c_A 87 RYLNWA---HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----VTKAEGVALAGRFG- 158 (187)
T ss_dssp HHHTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----SCHHHHHHHHHHHT-
T ss_pred HHHhhC---CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----cCHHHHHHHHHHcC-
Confidence 455443 5589999999765544321 1111111 5899999999999975443 34455666665553
Q ss_pred hhcCCCCEEEeec-CCCCCHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSS-VTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA-~~g~gi~el~~~i~~~~~ 303 (308)
++++++|| ++|+|++++|++|.+.+.
T Consensus 159 -----~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 159 -----CLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp -----CEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred -----CcEEEEeecCccccHHHHHHHHHHHHh
Confidence 68999999 899999999999988764
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=4.7e-22 Score=168.66 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=99.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..+|+++|.+|||||||+++|++.++ ..+.++.+.+. ..+.+++ .+.+|||||... ++.++..|+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~ 91 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELTIAGMTFTTFDLGGHIQ----------ARRVWKNYLP 91 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETTEEEEEEEECC--------------CCGGGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCcee--EEEEECCEEEEEEECCCcHh----------hHHHHHHHHh
Confidence 45999999999999999999998764 34445555442 3455555 789999999642 2224445555
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh----
Q 021764 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF---- 274 (308)
Q Consensus 204 ~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---- 274 (308)
. ++++++|+|++++.+..+. .+..++. ..++|+++|+||+|+.... ..+.+. +.++...
T Consensus 92 ~---~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~~~~~~---~~~~~~~~~~~ 159 (198)
T 1f6b_A 92 A---INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI------SEERLR---EMFGLYGQTTG 159 (198)
T ss_dssp G---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC------CHHHHH---HHHTCTTTCCC
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccC------CHHHHH---HHhCccccccc
Confidence 4 4559999999987655432 2222222 2589999999999997521 333333 3332110
Q ss_pred ----------cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021764 275 ----------QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 ----------~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....++++|||++|+|++++|++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 160 KGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp SSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 124679999999999999999999764
No 87
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.87 E-value=6.8e-22 Score=176.22 Aligned_cols=158 Identities=23% Similarity=0.317 Sum_probs=113.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC--CCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN--DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.++|+++|.+|||||||+|+|++.. ..+...||+|.......++ ..+.+|||||........ ....+.+.|+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~----~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS----PEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS----HHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC----hHHHHHHHHH
Confidence 4689999999999999999999975 3467778887754433333 389999999975422111 1123566676
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.. ..+|++++|+|+++.. ....+...+.+.++|+++|+||+|+..... .....+.+.+.++ +++++
T Consensus 77 ~~-~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~l~~~lg------~~vi~ 142 (272)
T 3b1v_A 77 LS-QRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQG-----KKINVDKLSYHLG------VPVVA 142 (272)
T ss_dssp HT-TCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTT-----CCCCHHHHHHHHT------SCEEE
T ss_pred hc-CCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCC-----cHHHHHHHHHHcC------CCEEE
Confidence 54 3467799999998642 222334444557899999999999875432 1234566666654 78999
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 021764 283 TSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~ 302 (308)
+||++|+|+++++++|.+.+
T Consensus 143 ~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 143 TSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CBTTTTBSHHHHHHHHHHSC
T ss_pred EEccCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 88
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=1.4e-21 Score=176.58 Aligned_cols=159 Identities=26% Similarity=0.244 Sum_probs=112.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.||||||||+|+|++.+. ..++..+++|+.. ..+..++ ++.+|||||+..... .+...+......+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~-~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~--~l~~~~~~~~~~~- 83 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGEFMDQEVYEA- 83 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce-eeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh--HHHHHHHHHHHHH-
Confidence 3799999999999999999999764 5567777777642 2233334 799999999875321 2222233333333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccC--CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQN--QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~--~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
...+|++++|+|++++.+..+..+...+... ++|+++|+||+|+.... ..+.+ .+... ....++
T Consensus 84 --l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~--------~~~~~---~~~~~-~~~~~~ 149 (301)
T 1wf3_A 84 --LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP--------EEAMK---AYHEL-LPEAEP 149 (301)
T ss_dssp --TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH--------HHHHH---HHHHT-STTSEE
T ss_pred --HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCch--------HHHHH---HHHHh-cCcCcE
Confidence 3456779999999988777766666666655 89999999999997532 10222 22222 223579
Q ss_pred EEeecCCCCCHHHHHHHHHHHH
Q 021764 281 IMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++||++|.|+++++++|.+.+
T Consensus 150 ~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 150 RMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp EECCTTCHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999997643
No 89
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.5e-21 Score=167.67 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=104.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceecc--CCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTS--KTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~--~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
...+||+|+|.+|||||||+++|++.+. .+.. +..|.+.....+.+++ .+.+|||+|... .+..+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~-~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~---------~~~~l 104 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHD-SMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG---------ENEWL 104 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCC-TTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH---------HHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-CCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc---------hhhhH
Confidence 4457999999999999999999997532 1222 2234443344555555 467899998431 11122
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHH-HHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~-l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
...|+ ...+++++|+|.++..++.... +...+. ..++|+++|+||+|+.+.+. +..+..+.+...+
T Consensus 105 ~~~~~---~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----v~~~e~~~~a~~~-- 175 (211)
T 2g3y_A 105 HDHCM---QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE----VSVSEGRACAVVF-- 175 (211)
T ss_dssp HHCCC---CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----SCHHHHHHHHHHH--
T ss_pred HHHHH---hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----EeHHHHHHHHHHc--
Confidence 22222 2345689999998765554431 222222 24799999999999975433 2333444444333
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.++++++||++|+||+++|++|.+.+...
T Consensus 176 ----~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 176 ----DCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp ----TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ----CCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 26899999999999999999999887543
No 90
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.87 E-value=4.8e-21 Score=169.48 Aligned_cols=159 Identities=28% Similarity=0.351 Sum_probs=114.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+|+|++..+ .+...||+|.... .+..++ .+.+|||||........ ....+.+.|
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~--~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~e~v~~~~ 78 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ--YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS----IDEKIARDY 78 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE--EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS----HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC----HHHHHHHHH
Confidence 36899999999999999999999763 3566778877643 344444 79999999975432211 011245566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+.. ..++++++|+|+++..+ ...+...+.+.++|+++|+||+|+..... .....+.+.+.++ ++++
T Consensus 79 ~~~-~~~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~~~~~-----i~~~~~~l~~~lg------~~vi 144 (258)
T 3a1s_A 79 LLK-GDADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEAKKTG-----MKIDRYELQKHLG------IPVV 144 (258)
T ss_dssp HHH-SCCSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHHHHTT-----CCBCHHHHHHHHC------SCEE
T ss_pred Hhh-cCCCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCCCccc-----hHHHHHHHHHHcC------CCEE
Confidence 544 44578999999987532 23344455567899999999999875443 1223566666654 7999
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021764 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||++|.|+++++++|.+.+.
T Consensus 145 ~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 145 FTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeeCCcCHHHHHHHHHHHhh
Confidence 9999999999999999988764
No 91
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.2e-22 Score=171.93 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+|+|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +..++.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 80 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER----------YRAITS 80 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTT----------TTCCCG
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccc----------hhhhHH
Confidence 3457999999999999999999999876444455556656555666665 689999999642 112333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++. .++++++|+|++++.+..+. .+...+. ..++|+++|+||+|+..... +..+....+.+..
T Consensus 81 ~~~~---~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~----- 148 (223)
T 3cpj_B 81 AYYR---GAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRA----VPTEESKTFAQEN----- 148 (223)
T ss_dssp GGTT---TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCC----SCHHHHHHHHHHT-----
T ss_pred HHhc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc----cCHHHHHHHHHHc-----
Confidence 3433 34569999999876554442 1111111 24789999999999976432 2334444444332
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|+|++++|++|.+.+.
T Consensus 149 -~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 149 -QLLFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp -TCEEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred -CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999988764
No 92
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.87 E-value=7.5e-22 Score=167.57 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=107.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.... ..++..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 76 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF----------QSLGVA 76 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG----------SCSCCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHhHHH
Confidence 457999999999999999999999865444444555555555555554 5899999996421 112223
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
++. .++++++|+|++++.+.... ++..... ..++|+++|+||+|+.... +..+....+.+..
T Consensus 77 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~-- 146 (207)
T 1vg8_A 77 FYR---GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----VATKRAQAWCYSK-- 146 (207)
T ss_dssp GGT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----SCHHHHHHHHHHT--
T ss_pred HHh---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-----cCHHHHHHHHHhc--
Confidence 333 34569999999876544332 1111111 1478999999999997422 2334444443321
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
...+++++||++|.|+++++++|.+.+...
T Consensus 147 ---~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 147 ---NNIPYFETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp ---TSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 247899999999999999999999877543
No 93
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=8e-22 Score=165.95 Aligned_cols=161 Identities=18% Similarity=0.129 Sum_probs=106.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||.... ..++.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~ 84 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDY----------DRLRP 84 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSS----------TTTGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcch----------hHHHH
Confidence 3457999999999999999999998765333333333332 23344444 5789999996431 12333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHH
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~ 267 (308)
.++. .++++++|+|++++.+.... .+...+.. .++|+++|+||+|+..... ....+..+....+.
T Consensus 85 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (194)
T 2atx_A 85 LSYP---MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA 161 (194)
T ss_dssp GGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred HhcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH
Confidence 3433 34569999999876554433 12222222 3899999999999976421 00113444555555
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+.++ ..+++++||++|+|++++|++|.+.+
T Consensus 162 ~~~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 162 KEIG-----ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHT-----CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcC-----CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 5543 24899999999999999999998765
No 94
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.87 E-value=3.2e-22 Score=171.80 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=108.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+||+++|.+|||||||+++|++..+.....++.+.+.. ..+.+++ .+.+|||||.. .+..++.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSP----------YYDNVRP 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSG----------GGTTTGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCH----------hHHHHHH
Confidence 44579999999999999999999998654333344433332 2233333 58899999964 2223444
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhH-H-HHHHHhc--cCCCCEEEEeecCCCCCcc--------cCCCCCchhhHHHHH
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPID-L-EYASWLG--QNQIPMTLVFTKCDKRKKK--------KNGGKRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~-~-~l~~~~~--~~~~pvivV~NK~Dl~~~~--------~~~~~~~~~~~~~~~ 267 (308)
.|+.. ++++++|+|+++..+..+ . .+...+. ..+.|+++|+||+|+.+.. .....+..+..+.+.
T Consensus 94 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (214)
T 3q3j_B 94 LCYSD---SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 170 (214)
T ss_dssp GGCTT---CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHcCC---CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH
Confidence 44444 456999999998765554 1 2222222 2479999999999997531 001123556666666
Q ss_pred HHHHhhhcCCC-CEEEeecCCCCC-HHHHHHHHHHHHHH
Q 021764 268 ELIQGFFQTAP-PWIMTSSVTNQG-RDEILLHMAQLRNY 304 (308)
Q Consensus 268 ~~~~~~~~~~~-~~~~vSA~~g~g-i~el~~~i~~~~~~ 304 (308)
+.++ + ++++|||++|.| ++++|++|.+.+..
T Consensus 171 ~~~~------~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 171 KQLG------AEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHT------CSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHcC------CCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 6654 5 899999999998 99999999987754
No 95
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.86 E-value=7.3e-22 Score=176.26 Aligned_cols=162 Identities=21% Similarity=0.240 Sum_probs=114.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+|+|++.. ..+...+|+|... ..+..++ .+.+|||||+...............+.+.|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 4689999999999999999999986 4567788877654 3444433 799999999865331111011112244555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+. ...+|++++|+|+++. .....+..++.+.++|+++|+||+|+.+... .....+.+.+.++ ++++
T Consensus 81 ~~-~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~-----~~~~~~~l~~~lg------~~~i 146 (274)
T 3i8s_A 81 IL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQN-----IRIEIDALSARLG------CPVI 146 (274)
T ss_dssp HH-HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTT-----EEECHHHHHHHHT------SCEE
T ss_pred Hh-hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhh-----HHHHHHHHHHhcC------CCEE
Confidence 43 3455779999999873 2333455566667899999999999875432 2334556666554 7999
Q ss_pred EeecCCCCCHHHHHHHHHHHH
Q 021764 282 MTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~ 302 (308)
++||++|+|+++++++|.+.+
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCC
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 999999999999999997654
No 96
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.86 E-value=7.8e-22 Score=166.14 Aligned_cols=152 Identities=22% Similarity=0.285 Sum_probs=103.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..+|+++|.+|||||||+++|++.++ ..+.++.+.+ ...+.+++ .+.+|||||... ++.++..|+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~ 89 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRL-ATLQPTWHPT--SEELAIGNIKFTTFDLGGHIQ----------ARRLWKDYFP 89 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCC-CCCCCCCSCE--EEEEEETTEEEEEEECCCSGG----------GTTSGGGGCT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC-CccccCCCCC--eEEEEECCEEEEEEECCCCHH----------HHHHHHHHHh
Confidence 45999999999999999999998764 3444455543 34555665 789999999643 2223334443
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh----
Q 021764 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF---- 274 (308)
Q Consensus 204 ~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---- 274 (308)
.++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.+.. .. +++.+.++...
T Consensus 90 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~~---~~~~~~~~~~~~~~~ 157 (190)
T 1m2o_B 90 ---EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV------SE---AELRSALGLLNTTGS 157 (190)
T ss_dssp ---TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------CH---HHHHHHTTCSSCCC-
T ss_pred ---cCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC------CH---HHHHHHhCCcccccc
Confidence 44669999999987665443 1222222 3689999999999997521 22 23333332211
Q ss_pred -----cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021764 275 -----QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 -----~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...++++++||++|+|++++|++|.+.
T Consensus 158 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 158 QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp --CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 123679999999999999999998753
No 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.86 E-value=1.9e-21 Score=166.37 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHH-HH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDK-FT 198 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~-~~ 198 (308)
..++|+++|.+|||||||+++|++..+.. ..++++.....+.+++ .+.+|||||.. .+.. ++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 72 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRD---TQTSITDSSAIYKVNNNRGNSLTLIDLPGHE----------SLRFQLL 72 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCC---BCCCCSCEEEEEECSSTTCCEEEEEECCCCH----------HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc---ccCCcceeeEEEEecCCCccEEEEEECCCCh----------hHHHHHH
Confidence 45799999999999999999999876432 2333333333455552 59999999963 3444 55
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH---HHHHHh-----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021764 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL---EYASWL-----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~ViD~~~~~~~~~~---~l~~~~-----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
..|+.. ++++++|+|+++....... .+..++ ...++|+++|+||+|+..... .....+.+.+.+
T Consensus 73 ~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~l~~~l 144 (214)
T 2fh5_B 73 DRFKSS---ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS-----AKLIQQQLEKEL 144 (214)
T ss_dssp HHHGGG---EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC-----HHHHHHHHHHHH
T ss_pred HHHHhh---CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc-----HHHHHHHHHHHH
Confidence 566544 4569999999863211111 111111 134789999999999986543 333344444443
Q ss_pred H-------------------h-hhc------------CCCCEEEeecCCC------CCHHHHHHHHHHH
Q 021764 271 Q-------------------G-FFQ------------TAPPWIMTSSVTN------QGRDEILLHMAQL 301 (308)
Q Consensus 271 ~-------------------~-~~~------------~~~~~~~vSA~~g------~gi~el~~~i~~~ 301 (308)
. . ... ..++|++|||++| +|++++|++|.+.
T Consensus 145 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 145 NTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 3 1 111 1567999999999 9999999999875
No 98
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.86 E-value=1.8e-21 Score=164.24 Aligned_cols=158 Identities=14% Similarity=0.136 Sum_probs=104.9
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
.....++|+++|.+|||||||+++|++.++. ...++.+ .....+..++ .+.+|||||... +..++.
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 91 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNICFTVWDVGGQDK----------IRPLWR 91 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETTEEEEEEECC---------------CTTHH
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECCEEEEEEECCCCHh----------HHHHHH
Confidence 3455679999999999999999999987653 2333333 3334455555 799999999642 233555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++..+ +++++|+|++++.+.... .+..++. ..++|+++|+||+|+..... .+++.+.+....
T Consensus 92 ~~~~~~---d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---------~~~i~~~~~~~~ 159 (192)
T 2b6h_A 92 HYFQNT---QGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP---------VSELTDKLGLQH 159 (192)
T ss_dssp HHHHTC---CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGG
T ss_pred HHhccC---CEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC---------HHHHHHHhCccc
Confidence 666554 458999999987655442 2222222 24799999999999975421 334444433221
Q ss_pred --cCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 275 --QTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 275 --~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
....+++++||++|.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 160 LRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp CSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 12357999999999999999999987653
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=1.1e-21 Score=163.26 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=106.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++.++ ..+.++.+.. ...+.+++ .+.+|||||..... ..+..+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 82 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKNLKLNVWDLGGQTSIR----------PYWRCY 82 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETTEEEEEEEEC----CC----------TTGGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECCEEEEEEECCCCHhHH----------HHHHHH
Confidence 4457999999999999999999998765 4555565543 33445544 78999999975311 123333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+ ..++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.+.. . .+++.+.+... .
T Consensus 83 ~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~---~~~i~~~~~~~~~~ 150 (183)
T 1moz_A 83 Y---ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL------S---ASEVSKELNLVELK 150 (183)
T ss_dssp T---TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC------C---HHHHHHHTTTTTCC
T ss_pred h---ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC------C---HHHHHHHhCccccc
Confidence 3 345679999999987665543 2233332 2679999999999997532 1 23333333211 1
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
....+++++||++|+|+++++++|.+.+.+..
T Consensus 151 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 151 DRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp SSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 12357999999999999999999999887643
No 100
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.86 E-value=5.5e-22 Score=166.59 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=104.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCC-------CCceEEEEE----E-EeCC---CEEEecCCCcccCCCc
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKT-------PGKTQCINH----F-RIND---SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~-------~~~t~~~~~----~-~~~~---~~~liDtpG~~~~~~~ 187 (308)
...+||+++|.+|||||||++.+.+.. ....... ...|..... + ..++ .+.+|||||..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----- 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV----- 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC-----
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH-----
Confidence 345799999999999999998887753 2222111 111221111 1 1222 58899999964
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhH----HHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCC
Q 021764 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID----LEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKR 258 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~----~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~ 258 (308)
.+..++..++..+ +++++|+|++++....+ ..+..|+.. .++|+++|+||+|+.+..
T Consensus 86 -----~~~~~~~~~~~~~---d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~------ 151 (198)
T 3t1o_A 86 -----FYNASRKLILRGV---DGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDAL------ 151 (198)
T ss_dssp -----SCSHHHHHHTTTC---CEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCC------
T ss_pred -----HHHHHHHHHHhcC---CEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccccc------
Confidence 3444666666554 45899999985433322 134455543 589999999999997642
Q ss_pred chhhHHHHHHHHHhhhcCCC-CEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 259 PEENLNDFQELIQGFFQTAP-PWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~-~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+.++++.+.. .. +++++||++|+|++++|++|.+.+.+..
T Consensus 152 ~~~~~~~~~~~~------~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 152 PVEMVRAVVDPE------GKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CHHHHHHHHCTT------CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc------CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 334444433322 35 8999999999999999999999887654
No 101
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=165.87 Aligned_cols=165 Identities=21% Similarity=0.175 Sum_probs=104.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||..... .++.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 86 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFD----------KLRP 86 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCS----------SSGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHH----------HHhH
Confidence 4457999999999999999999998764333333333222 23344554 57799999974321 1333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHH
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~ 267 (308)
.++.. ++++++|+|++++.+..+.. +...+.. .++|+++|+||+|+..... ....+..+....+.
T Consensus 87 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (201)
T 2q3h_A 87 LCYTN---TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA 163 (201)
T ss_dssp GGGTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhcCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH
Confidence 34433 45699999999766554431 2222221 4899999999999975321 01113444555555
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+.++ ..+++++||++|.|++++|++|.+.+.+..
T Consensus 164 ~~~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 164 EEIK-----AASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp HHHT-----CSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HhcC-----CcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 5443 248999999999999999999998876554
No 102
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=4.7e-21 Score=160.14 Aligned_cols=161 Identities=24% Similarity=0.271 Sum_probs=111.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+ .....++++.. ...+.+++ .+.+|||||........ ....+...|
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~~~~ 80 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV--YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDY 80 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE--EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS----HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--cccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc----HHHHHHHHH
Confidence 36999999999999999999998753 34555665543 34455555 79999999976432111 112355566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+... .++++++|+|.++.. ....+...+...+.|+++|+||+|+..... .....+++.+.++ .+++
T Consensus 81 ~~~~-~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~------~~~~ 146 (188)
T 2wjg_A 81 IINE-KPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLG-----IEIDVDKLEKILG------VKVV 146 (188)
T ss_dssp HHHH-CCSEEEEEEEGGGHH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTT-----CCCCHHHHHHHHT------SCEE
T ss_pred Hhcc-CCCEEEEEecchhHH--HHHHHHHHHHhcCCCEEEEEEhhhcccccc-----chHHHHHHHHHhC------CCeE
Confidence 5542 246799999987521 112233344457899999999999875432 1234556655553 6899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHH
Q 021764 282 MTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++||++|+|+++++++|.+.+...
T Consensus 147 ~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 147 PLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp ECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred EEEecCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999887543
No 103
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=167.96 Aligned_cols=163 Identities=16% Similarity=0.176 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||.. .+..++..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~ 101 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD----------DYDRLRPL 101 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCch----------hhhHHHHH
Confidence 457999999999999999999998765333333333222 23344444 58899999953 33335555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHH
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQE 268 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~ 268 (308)
++. .++++++|+|++++.+..... +...+. ..++|+++|+||+|+...... ...+..+....+.+
T Consensus 102 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 178 (214)
T 2j1l_A 102 FYP---DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR 178 (214)
T ss_dssp ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred Hhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH
Confidence 554 345699999998765544321 222222 147999999999999864310 00123333444444
Q ss_pred HHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 269 LIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.++ ..+++++||++|.|++++|++|.+.+.+.
T Consensus 179 ~~~-----~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 179 SVG-----AVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HTT-----CSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred hcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 332 24899999999999999999999887654
No 104
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.86 E-value=3e-22 Score=172.37 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=112.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....+||+++|.+|||||||+++|+.+.+...+.+++|++.....+..++ .+.+|||||... +..++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 81 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK----------FGGLR 81 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG----------TSCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH----------HhHHH
Confidence 34457999999999999999999777666567788888888776666654 689999999542 22244
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021764 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..++.. ++++++|+|++++.+.... ..|+. ..++|+++|+||+|+.+... ......+.+..
T Consensus 82 ~~~~~~---~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------~~~~~~~~~~~--- 147 (221)
T 3gj0_A 82 DGYYIQ---AQCAIIMFDVTSRVTYKNV--PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------KAKSIVFHRKK--- 147 (221)
T ss_dssp HHHHTT---CCEEEEEEETTCHHHHHTH--HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------CGGGCCHHHHH---
T ss_pred HHHHhc---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECCccccccc------cHHHHHHHHHc---
Confidence 455554 4459999999976554432 22222 14799999999999976432 12233333333
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|++|.+.+..
T Consensus 148 ---~~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 148 ---NLQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp ---TCEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred ---CCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2789999999999999999999987643
No 105
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.86 E-value=4.2e-22 Score=168.94 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC--CcceeccCCCCceEEEEEEEeCC-----CEEEecCCCcccCCCchhhhhchHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRR--KKLALTSKTPGKTQCINHFRIND-----SWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~--~~~~~~~~~~~~t~~~~~~~~~~-----~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
..++|+++|.+|||||||+++|++. .+.....++.+.......+.+++ .+.+|||||.. .+..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~ 88 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD----------LYKE 88 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH----------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH----------HHHH
Confidence 3469999999999999999999987 44322333333223334555554 48999999963 3334
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc------CCCCEEEEeecCCCCC-cccCCCCCchhhHHHHHH
Q 021764 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ------NQIPMTLVFTKCDKRK-KKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~~------~~~pvivV~NK~Dl~~-~~~~~~~~~~~~~~~~~~ 268 (308)
++..++ ..++++++|+|++++.+.... .+...+.. .++|+++|+||+|+.. ... +..+.++++.+
T Consensus 89 ~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----v~~~~~~~~~~ 161 (208)
T 2yc2_C 89 QISQYW---NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----VRLDMAQDWAT 161 (208)
T ss_dssp HHSTTC---CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------C----CCHHHHHHHHH
T ss_pred HHHHHH---hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----CCHHHHHHHHH
Confidence 444443 345679999999876554332 12222211 4799999999999986 332 23455555554
Q ss_pred HHHhhhcCCCCEEEeecCC-CCCHHHHHHHHHHHHHH
Q 021764 269 LIQGFFQTAPPWIMTSSVT-NQGRDEILLHMAQLRNY 304 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~-g~gi~el~~~i~~~~~~ 304 (308)
.++ .+++++||++ |.|++++|++|.+.+.+
T Consensus 162 ~~~------~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 162 TNT------LDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp HTT------CEEEECCC-------CHHHHHHHHHHHH
T ss_pred HcC------CEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 432 7899999999 99999999999987654
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.86 E-value=9.3e-21 Score=161.39 Aligned_cols=176 Identities=37% Similarity=0.559 Sum_probs=116.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
....+|+++|.+|||||||+|+|++..+...+.+++|++.....+.+++.+.+|||||+.......+....|......|+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 103 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 103 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHH
Confidence 34458999999999999999999997655566778888876666666668999999998643222222224555566666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....++.+++++|.+.+.+..+.++..|+...+.|+++|+||+|+....+ .......+...+.+ ......+++
T Consensus 104 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~-----~~~~~~~~~~~~~~-~~~~~~~~~ 177 (210)
T 1pui_A 104 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA-----RKAQLNMVREAVLA-FNGDVQVET 177 (210)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH-----HHHHHHHHHHHHGG-GCSCEEEEE
T ss_pred HhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh-----HHHHHHHHHHHHHh-cCCCCceEE
Confidence 666677889999999988777666677777778899999999999875321 11113333333332 222357899
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 021764 283 TSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+||+++.|+++++++|.+.+.+
T Consensus 178 ~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHHHC-
T ss_pred EeecCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999887643
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.86 E-value=1.6e-21 Score=161.71 Aligned_cols=157 Identities=24% Similarity=0.276 Sum_probs=103.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.+|||||||+|+|++... ..++..+++|.+ ...+.+++ .+.+|||||+.......+ ...+... ..++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~-~~~~ 81 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVE-RIGIERA-WQEI 81 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHH-HHHHHHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-ceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHH-HHHHHHH-HHHH
Confidence 5899999999999999999998753 345667777653 34555655 789999999864221111 0001111 1233
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
. .++++++|+|+++..+..+..+...+. ..++|+++|+||+|+.+... ... . ....+
T Consensus 82 ~---~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~----------~--~~~~~ 141 (172)
T 2gj8_A 82 E---QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMS----------E--VNGHA 141 (172)
T ss_dssp H---TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEE----------E--ETTEE
T ss_pred H---hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhh----------h--ccCCc
Confidence 3 345699999999877655443333222 24699999999999864211 000 0 01367
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 280 WIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++++||++|+|++++|++|.+.+...
T Consensus 142 ~~~~SA~~g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 142 LIRLSARTGEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHC---
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 99999999999999999999877543
No 108
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.86 E-value=1.4e-21 Score=163.75 Aligned_cols=158 Identities=18% Similarity=0.161 Sum_probs=107.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++.++. ...++.+.. ...+.+++ .+.+|||||...... .+..+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~~ 86 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYKNISFEVWDLGGQTGVRP----------YWRCY 86 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEETTEEEEEEEECCSSSSCC----------CCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEECCEEEEEEECCCCHhHHH----------HHHHH
Confidence 34579999999999999999999987653 334444433 33444555 799999999753211 22233
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+. .++++++|+|++++.+.... .+..++.. .++|+++|+||+|+.+... .+++.+.+... .
T Consensus 87 ~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~ 154 (189)
T 2x77_A 87 FS---DTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---------EAEIAEQLGVSSIM 154 (189)
T ss_dssp ST---TCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGGCC
T ss_pred hh---cCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---------HHHHHHHhChhhcc
Confidence 33 45669999999988765543 23333332 5799999999999976431 23333333211 1
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
....+++++||++|+|+++++++|.+.+.+.
T Consensus 155 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 155 NRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred CCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 1235799999999999999999999988653
No 109
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.86 E-value=1.3e-21 Score=162.88 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=103.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||... +..++..+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 73 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED----------YDRLRPLS 73 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGG----------GTTTGGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHh----------HHHHHHHh
Confidence 35999999999999999999998765433333333322 22334444 577999999742 22233333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHH
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~ 269 (308)
+. .++++++|+|++++.+..+.. +...+.. .++|+++|+||+|+.+.... ...+..+....+.+.
T Consensus 74 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (186)
T 1mh1_A 74 YP---QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150 (186)
T ss_dssp CT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred cc---CCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh
Confidence 33 446699999998765554431 2222222 38999999999999754210 001223333333333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++ ..+++++||++|+|+++++++|.+.+.
T Consensus 151 ~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 151 IG-----AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TT-----CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cC-----CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 22 248999999999999999999988763
No 110
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.85 E-value=2.2e-21 Score=164.67 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=103.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|++..+.....++.+.... ..+.+++ .+.+|||||... +..++..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 93 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQED----------YDRLRPLS 93 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGG----------GTTTGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchh----------HHHHHHHh
Confidence 469999999999999999999997654333333333322 2344444 688999999542 22233333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHH
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~ 269 (308)
+. .++++++|+|+++..+.... .+...+.. .++|+++|+||+|+...... ...+..+....+.+.
T Consensus 94 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 170 (201)
T 2gco_A 94 YP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR 170 (201)
T ss_dssp CT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred cC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh
Confidence 33 34569999999876544432 22233322 38999999999999864210 001223334444333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++ ..+++++||++|+|+++++++|.+.+-
T Consensus 171 ~~-----~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 171 IS-----AFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CC-----CcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 32 237999999999999999999988653
No 111
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.85 E-value=5.8e-22 Score=164.58 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=97.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||++++++..+.....++.+.... ..+..++ .+.+|||||... +..++.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 74 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQED----------YNRLRP 74 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CT----------TTTTGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChh----------hhhhHH
Confidence 34579999999999999999999987643222222221111 1112222 567999999642 222333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCcccC------CCCCchhhHHHHHHH
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKKN------GGKRPEENLNDFQEL 269 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~~------~~~~~~~~~~~~~~~ 269 (308)
.++. .++++++|+|++++.+..+.. +...+.. .++|+++|+||+|+.+.... ...+..+..+++.+.
T Consensus 75 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~ 151 (182)
T 3bwd_D 75 LSYR---GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL 151 (182)
T ss_dssp GGGT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH
T ss_pred hhcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH
Confidence 4443 345699999998765544431 2222222 47999999999999764320 011233444555544
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++ ..+++++||++|+|++++|++|.+.+
T Consensus 152 ~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 152 IG-----APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HT-----CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cC-----CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 43 24899999999999999999998764
No 112
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=1.4e-21 Score=185.42 Aligned_cols=159 Identities=21% Similarity=0.279 Sum_probs=101.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--CC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.||||||||+|+|++... +.+.+.+|+|++...... ++ .+.+|||||+...... +...+...+..+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--FLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------C--HHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh--HHHHHHHHHHHH
Confidence 36899999999999999999998754 678889999987554443 33 7999999998643211 233455556666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+..+ |++++|+|+..+.+..+.++..++...++|+++|+||+|+...... ..++ +. ++ ..+++
T Consensus 80 ~~~a---d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~--------~~~~---~~--lg-~~~~~ 142 (436)
T 2hjg_A 80 MDEA---DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN--------IYDF---YS--LG-FGEPY 142 (436)
T ss_dssp HHHC---SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C--------CCSS---GG--GS-SCCCE
T ss_pred HHhC---CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh--------HHHH---HH--cC-CCCeE
Confidence 6554 4599999999998888888888888889999999999998753210 0111 11 11 13789
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021764 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||++|.|++++++++.+.+.
T Consensus 143 ~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 143 PISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ECBTTTTBTHHHHHHHHHHTGG
T ss_pred EEeCcCCCChHHHHHHHHHhcC
Confidence 9999999999999999987664
No 113
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.7e-21 Score=164.79 Aligned_cols=160 Identities=16% Similarity=0.190 Sum_probs=100.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.... ..+..++ .+.+|||||.... ..++..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~ 93 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDY----------DRLRPLS 93 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTC----------TTTGGGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHH----------HHHHHhh
Confidence 359999999999999999999998654333334343332 2344554 6889999996431 1123333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHH
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~ 269 (308)
+ ..++++++|+|+++..+.... .+...+.. .++|+++|+||+|+...... ...+..+....+.+.
T Consensus 94 ~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 170 (207)
T 2fv8_A 94 Y---PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVR 170 (207)
T ss_dssp C---TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred c---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHh
Confidence 3 334669999999876544332 22223322 48999999999999764210 001222333333333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++ ..+++++||++|+|+++++++|.+.+-
T Consensus 171 ~~-----~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 171 IQ-----AYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp TT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cC-----CCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22 237999999999999999999998764
No 114
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.85 E-value=1.1e-21 Score=167.56 Aligned_cols=162 Identities=18% Similarity=0.133 Sum_probs=106.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||... +..++..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQED----------YSRLRPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCC----------CCC--CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHH----------HHHHHHh
Confidence 457999999999999999999998765433334444332 22344444 688999999743 2223444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCcccC----CCCCchhhHHHHHHHHHh
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKKN----GGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~ 272 (308)
++.. ++++++|+|.+++.+..+. .+...+.. .++|+++|+||+|+.+.... ...+..+..+++.+.++
T Consensus 77 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~- 152 (212)
T 2j0v_A 77 SYRG---ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG- 152 (212)
T ss_dssp GGTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-
T ss_pred hccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-
Confidence 4443 4569999999876554442 12222222 37999999999999764320 00113444555554443
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|+|++++|++|.+.+.+
T Consensus 153 ----~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 153 ----AAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp ----CSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred ----CceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 2489999999999999999999987653
No 115
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.85 E-value=6.7e-21 Score=161.00 Aligned_cols=168 Identities=14% Similarity=0.069 Sum_probs=98.7
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--C--CCEEEecCCCcccCCCchhhhhch
Q 021764 119 DCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--N--DSWYLVDLPGYGYAAAPRELRTDW 194 (308)
Q Consensus 119 ~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~--~~~~liDtpG~~~~~~~~~~~~~~ 194 (308)
..+....+||+++|.+|||||||++++.+... ...+.....+.......+ + ..+.+|||||... +
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~ 82 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD----------F 82 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC----------T
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHH----------H
Confidence 34456678999999999999999999988532 222211111211122222 2 2799999999642 1
Q ss_pred HHHH---HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021764 195 DKFT---KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 195 ~~~~---~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
.... ..|+..+ +++++|+|+++........+..|+.. .+.|+++|+||+|+........ .......+.
T Consensus 83 ~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~v~~~~ 158 (196)
T 3llu_A 83 FDPTFDYEMIFRGT---GALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIE-TQRDIHQRA 158 (196)
T ss_dssp TCTTCCHHHHHHTC---SEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH-HHHHHHHHH
T ss_pred HhhhhhcccccccC---CEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhH-HHhHHHHHH
Confidence 1122 4666654 45899999998622222344455443 5899999999999976321000 000111111
Q ss_pred HHHHHhhh--cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 267 QELIQGFF--QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 267 ~~~~~~~~--~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+.+.... ...++++++||++ +|++++|+.|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 159 NDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 22222211 2347899999999 99999999998753
No 116
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.85 E-value=2.3e-21 Score=162.04 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=105.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...+|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||... +..++..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 74 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY----------YDNVRPL 74 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGG----------GTTTGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChh----------hhhhHHh
Confidence 346999999999999999999999765433333333322 22334443 588999999642 2223333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHH
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQE 268 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~ 268 (308)
++. .++++++|+|.+++.+..+. .+...+.. .+.|+++|+||+|+..... ....+..+..+++.+
T Consensus 75 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 151 (184)
T 1m7b_A 75 SYP---DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 151 (184)
T ss_dssp GCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred hcC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH
Confidence 333 34569999999976554432 12222221 4799999999999975310 011234455555555
Q ss_pred HHHhhhcCCCCEEEeecC-CCCCHHHHHHHHHHHHH
Q 021764 269 LIQGFFQTAPPWIMTSSV-TNQGRDEILLHMAQLRN 303 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~-~g~gi~el~~~i~~~~~ 303 (308)
.++ ..+++++||+ ++.|++++|++|.+.+-
T Consensus 152 ~~~-----~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 152 QIG-----AATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHT-----CSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred HcC-----CcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 543 3689999999 68999999999988753
No 117
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.85 E-value=1.7e-20 Score=166.96 Aligned_cols=160 Identities=23% Similarity=0.301 Sum_probs=112.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+|+|++..+ .+...+++|... ..+.+++ .+.+|||||+........ ...+.+.|
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----~~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ--HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSI----DELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE--EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCH----HHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCH----HHHHHHHh
Confidence 46999999999999999999999754 456677776654 3445555 799999999864222111 11244455
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
+. ...+|++++|+|+++.. ....+...+.+.+ +|+++|+||+|+.+... .....+.+.+.++ +++
T Consensus 77 ~~-~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~l~~~lg------~~~ 142 (271)
T 3k53_A 77 IL-DGNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKG-----AKIDIKKMRKELG------VPV 142 (271)
T ss_dssp HH-TTCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHT-----CCCCHHHHHHHHS------SCE
T ss_pred hh-ccCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccc-----cHHHHHHHHHHcC------CcE
Confidence 43 34567899999998742 2223333333455 99999999999876443 1223556666554 789
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHH
Q 021764 281 IMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++||++|.|++++++++.+.+..
T Consensus 143 ~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 143 IPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988754
No 118
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.84 E-value=1.3e-20 Score=158.97 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC--CCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK--TPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
..+||+++|.+|||||||+|+|++... .+... ..+.+.....+.+++ .+.+|||+|.... + . .+.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~----~---~--~~~ 74 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHD-SMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE----N---E--WLH 74 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSC-CC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----------C--TTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcC-CcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch----h---h--hHH
Confidence 346999999999999999999997432 12222 233333334455555 4678999985321 1 1 123
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021764 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..|+..++ ++++|+|.++..++... .+...+ ...++|+++|+||+|+...+. +..+..+.+....
T Consensus 75 ~~~~~~~~---~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----v~~~~~~~~a~~~--- 144 (192)
T 2cjw_A 75 DHCMQVGD---AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXRE----VSVSEGRAXAVVF--- 144 (192)
T ss_dssp GGHHHHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHT---
T ss_pred HhhcccCC---EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcccc----ccHHHHHHHHHHh---
Confidence 34555444 48999999876555443 111212 224799999999999975432 2233333333222
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.++++++||++|.|++++|++|.+.+...
T Consensus 145 ---~~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 145 ---DXKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp ---TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ---CCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 36899999999999999999999877543
No 119
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.84 E-value=1.2e-20 Score=180.44 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=91.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+|+|++.+. ..+++.+++|++. ..+.+++ .+.+|||||+.......+ .+ ..+...
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve---~~--gi~~~~ 307 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIE---HE--GIRRSR 307 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHH---HH--HHHHHH
Confidence 3799999999999999999999754 5688889988875 4455565 799999999864221111 10 112223
Q ss_pred HhcCCccEEEEEEeCCCCCCh----hHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021764 203 LNRSTLVSVFLLIDASIPAKP----IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~----~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.....+|++++|+|++++.+. ...++...+. ++|+++|+||+|+..... ...+.+.+. . ..
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~-------~~~~~l~~~-~-----~~ 372 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD-------ALIRAIADG-T-----GT 372 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH-------HHHHHHHHH-H-----TS
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc-------hhHHHHHhc-C-----CC
Confidence 345567889999999998876 3334444443 799999999999986432 111222222 1 26
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 279 PWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+++++||++|+|+++++++|.+.+.
T Consensus 373 ~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 373 EVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998875
No 120
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.84 E-value=7.4e-21 Score=181.94 Aligned_cols=157 Identities=22% Similarity=0.303 Sum_probs=113.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcc-cCCCchhhhhchHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYG-YAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~-~~~~~~~~~~~~~~~~~~~ 201 (308)
++|+|+|.||||||||+|+|++.++ +++++.+++|++. ..+.+++ .+.+|||||+. +.....+ ...+ .....+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve-~~gi-~~~~~~ 320 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE-RLGI-ERTLQE 320 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC-CCCH-HHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHH-HHHH-HHHHHH
Confidence 5899999999999999999999754 5678888888764 4455555 79999999987 4322111 0001 123344
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+..+ |++++|+|++++.+..+.++...+ .++|+++|+||+|+.... . .+++.+.. ....+++
T Consensus 321 ~~~a---D~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~------~---~~~~~~~~----~~~~~~i 382 (482)
T 1xzp_A 321 IEKA---DIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKI------N---EEEIKNKL----GTDRHMV 382 (482)
T ss_dssp HHHC---SEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCC------C---HHHHHHHH----TCSTTEE
T ss_pred hhcc---cEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccccc------C---HHHHHHHh----cCCCcEE
Confidence 4444 559999999988887776666555 479999999999997531 1 22332222 2236899
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021764 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||++|+|+++++++|.+.+.
T Consensus 383 ~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 383 KISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998654
No 121
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=3.1e-21 Score=184.12 Aligned_cols=173 Identities=19% Similarity=0.202 Sum_probs=103.4
Q ss_pred HhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC---CCEEEecCCCcccCCC
Q 021764 110 FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN---DSWYLVDLPGYGYAAA 186 (308)
Q Consensus 110 f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~ 186 (308)
...++...|....-..++|+|+|.+|||||||+|+|++.+. +.+...+|+|++....... ..+.+|||||+....
T Consensus 8 ~~~~~~~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~- 85 (456)
T 4dcu_A 8 HHHSSGLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD- 85 (456)
T ss_dssp ---------------CCEEEEECSSSSSHHHHHHHHEEEEE-C-----------CEEEECTTCSSCCEEECCCC------
T ss_pred ccccCCCCCChhhcCCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcc-
Confidence 34556666777777788999999999999999999999754 5678889999876554442 379999999986322
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021764 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
.....++......++..+ |++++|+|+..+.+..+.++..++...++|+++|+||+|+.+... ..
T Consensus 86 -~~~~~~~~~~~~~~~~~a---d~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~-----------~~ 150 (456)
T 4dcu_A 86 -EPFLAQIRQQAEIAMDEA---DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-----------NI 150 (456)
T ss_dssp --CCHHHHHHHHHHHHHHC---SEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--------------------
T ss_pred -hHHHHHHHHHHHhhHhhC---CEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh-----------hH
Confidence 122235555666666654 459999999998888888889999888999999999999874321 11
Q ss_pred HHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 267 QELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 267 ~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+.+.. . ...++++||++|.|++++++++.+.+
T Consensus 151 ~e~~~l--g-~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 151 YDFYSL--G-FGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp CCSGGG--S-SSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred HHHHHc--C-CCceEEeecccccchHHHHHHHHhhc
Confidence 111111 1 23578999999999999999987755
No 122
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=1.8e-21 Score=165.81 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+.. ....+.+++ .+.+|||||... +..++.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 96 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLED----------YDRLRP 96 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGG----------GTTTGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchh----------hHHHHH
Confidence 345799999999999999999999875432222222211 122333443 466999999642 222333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHH
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~ 267 (308)
.++. .++++++|+|++++.+..+.. +...+.. .++|+++|+||+|+...... ...+..+....+.
T Consensus 97 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 4gzl_A 97 LSYP---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
T ss_dssp GGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHH
Confidence 3333 446699999999876655432 2223322 48999999999999764320 0001223333333
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021764 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+.++ ..+++++||++|+|++++|++|.+.
T Consensus 174 ~~~~-----~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 174 KEIG-----AVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHTT-----CSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HhcC-----CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 3322 2469999999999999999999874
No 123
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=4.2e-21 Score=163.85 Aligned_cols=162 Identities=19% Similarity=0.182 Sum_probs=105.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+||+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||... +..++.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 94 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY----------YDNVRP 94 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGG----------GTTTGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHh----------hhHHHH
Confidence 3456999999999999999999999865433333333322 22344443 588999999642 222333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHH
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~ 267 (308)
.++. .++++++|+|+++..+..+. .+...+.. .+.|+++|+||+|+..... ....+..+..+++.
T Consensus 95 ~~~~---~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 171 (205)
T 1gwn_A 95 LSYP---DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 171 (205)
T ss_dssp GGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH
Confidence 3333 34569999999976554432 12222221 4799999999999975310 01123445555555
Q ss_pred HHHHhhhcCCCCEEEeecC-CCCCHHHHHHHHHHHHH
Q 021764 268 ELIQGFFQTAPPWIMTSSV-TNQGRDEILLHMAQLRN 303 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~-~g~gi~el~~~i~~~~~ 303 (308)
+.++ ..++++|||+ +|+|++++|++|.+.+-
T Consensus 172 ~~~~-----~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 172 KQIG-----AATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HHHT-----CSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHcC-----CCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 5543 2589999999 68999999999988754
No 124
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=171.61 Aligned_cols=156 Identities=14% Similarity=0.146 Sum_probs=105.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..++|+|+|.+|||||||+++|++..+... .|+.......+...+ .+.+|||||.. .+..++..++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~---~pT~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYF 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE---EEETTEEEEEEEETTEEEEEEECC---------------CCSHHHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc---ccccceEEEEEecCcEEEEEEECCCCH----------hHHHHHHHHh
Confidence 345999999999999999999998765322 232333334444444 79999999943 2333455555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--c
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--Q 275 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 275 (308)
.. ++++++|+|+++..+.... .+..++.. .++|+++|+||+|+.+... .+++.+.+.... .
T Consensus 231 ~~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---------~~~i~~~~~~~~~~~ 298 (329)
T 3o47_A 231 QN---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRH 298 (329)
T ss_dssp TT---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHHTCTTCCS
T ss_pred cc---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---------HHHHHHHhchhhhhc
Confidence 44 4569999999987776543 22333332 4899999999999986432 344444444322 1
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..++++++||++|.|++++|++|.+.+.+
T Consensus 299 ~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 299 RNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 34679999999999999999999987753
No 125
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.83 E-value=8.3e-23 Score=173.07 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+|+|++..+.....+..+.+.....+.+++ .+.+|||||..... .++.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 100 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TITS 100 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC----------CCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH----------HHHH
Confidence 3457999999999999999999998765444444445555556666655 58999999964321 1222
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++. .++++++|+|+++..+.... .+...+. ..++|+++|+||+|+.+.+. +..+..+.+.+.+
T Consensus 101 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----v~~~~~~~~~~~~----- 168 (199)
T 3l0i_B 101 SYYR---GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV----VDYTTAKEFADSL----- 168 (199)
T ss_dssp C--C---CCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----CCSCC-CHHHHTT-----
T ss_pred HHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcccc----CCHHHHHHHHHHc-----
Confidence 3333 34569999999986654443 1122222 24789999999999976543 1223344444443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.++++++||++|.|++++|++|.+.+.
T Consensus 169 -~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 169 -GIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp -TCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred -CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 278999999999999999999987654
No 126
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=2.8e-20 Score=167.21 Aligned_cols=176 Identities=19% Similarity=0.237 Sum_probs=112.6
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcce----eccCCCC----------------------ceEE-----------
Q 021764 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLA----LTSKTPG----------------------KTQC----------- 163 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~----~~~~~~~----------------------~t~~----------- 163 (308)
+....++|+++|.+|||||||+|+|++.++.+ .++..|+ +++.
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 34556899999999999999999999976532 2334443 2211
Q ss_pred ---------------EEEEEe-CCCEEEecCCCcccCCC---chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChh
Q 021764 164 ---------------INHFRI-NDSWYLVDLPGYGYAAA---PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPI 224 (308)
Q Consensus 164 ---------------~~~~~~-~~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~ 224 (308)
...... ...+.+|||||+..... ...+...+..++..|+...+. ++++|+|++......
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~il~v~d~~~~~~~~ 179 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENC--LILAVSPANSDLANS 179 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTE--EEEEEEESSSCGGGC
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCe--EEEEEecCCcchhhh
Confidence 000111 24799999999875321 122222456677777765443 366899998876655
Q ss_pred HH-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 225 DL-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 225 ~~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+. .+..++...++|+++|+||+|+.+.... . .+.+...+........+++++||++|.|+++++++|.+...
T Consensus 180 ~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~----~---~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 180 DALKIAKEVDPQGQRTIGVITKLDLMDEGTD----A---RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHHHHHCTTCSSEEEEEECGGGSCTTCC----C---HHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEEccccCCCCch----H---HHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 53 4677777778999999999999864320 1 11111110000001246889999999999999999987554
Q ss_pred HH
Q 021764 304 YW 305 (308)
Q Consensus 304 ~~ 305 (308)
.+
T Consensus 253 ~~ 254 (299)
T 2aka_B 253 FF 254 (299)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 127
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=2.8e-20 Score=179.19 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=106.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.++|+|+|.+|||||||+|+|++.++ . ...++.......+.+++ .+.+|||||... +..++..|+.
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~--~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~ 388 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-V--TTIPTVGFNVETVTYKNVKFNVWDVGGQDK----------IRPLWRHYYT 388 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-C--CCCCCSSEEEEEEESSSCEEEEEEECCCGG----------GSGGGGGGGT
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-C--CcCCccceeEEEEEeCCEEEEEEECCCcHH----------HHHHHHHHhc
Confidence 36999999999999999999999864 2 23333333344455554 799999999542 2234445554
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cC
Q 021764 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QT 276 (308)
Q Consensus 204 ~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 276 (308)
. +|++++|+|++++.+..+. .+..++. ..++|+++|+||+|+.+... .+++.+.+.... ..
T Consensus 389 ~---ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~ 456 (497)
T 3lvq_E 389 G---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---------PHEIQEKLGLTRIRDR 456 (497)
T ss_dssp T---CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC---------HHHHHHHTTCTTCCSS
T ss_pred c---CCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC---------HHHHHHHhchhhhhcC
Confidence 3 4569999999987665443 2223322 25899999999999976431 233433333211 12
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|+|++++|++|.+.++.+.
T Consensus 457 ~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 457 NWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHCC---
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 356999999999999999999999877654
No 128
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.82 E-value=5.9e-20 Score=163.79 Aligned_cols=164 Identities=18% Similarity=0.274 Sum_probs=94.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceecc------CCCCceEEE--EEEEeCC---CEEEecCCCcccCCCchhhhhc
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTS------KTPGKTQCI--NHFRIND---SWYLVDLPGYGYAAAPRELRTD 193 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~------~~~~~t~~~--~~~~~~~---~~~liDtpG~~~~~~~~~~~~~ 193 (308)
.++|+++|.+|+|||||+|+|++.+...... ..++++... ..+..++ .+.+|||||+.+.....+ .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~---~ 84 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN---C 84 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT---T
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh---h
Confidence 4799999999999999999998865322111 023333332 2333333 689999999875433222 3
Q ss_pred hHHHH-------HHHHHhc----------CCccEEEEEEeCCC-CCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCC
Q 021764 194 WDKFT-------KDYFLNR----------STLVSVFLLIDASI-PAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNG 255 (308)
Q Consensus 194 ~~~~~-------~~~~~~~----------~~~~~vl~ViD~~~-~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~ 255 (308)
|..+. ..|+... ..+|++++++|.+. +....+.++..++.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~--- 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPE--- 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHH---
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHH---
Confidence 33343 4555441 12356788886654 677777777887776 89999999999987533
Q ss_pred CCCchhhHHHHHHHHHhhh-cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021764 256 GKRPEENLNDFQELIQGFF-QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....+.+.+.+.+ ...++++++||++++|+++++++|.+.
T Consensus 161 ------e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 161 ------ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred ------HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 2333333332222 235789999999999999999998764
No 129
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=7.1e-22 Score=167.84 Aligned_cols=161 Identities=18% Similarity=0.152 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||.. ++..++.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 96 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE----------DYDRLRP 96 (204)
Confidence 4457999999999999999999998754322222222111 11222222 46699999964 3334555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhccC--CCCEEEEeecCCCCCcccCCC--------CCchhhHHHHH
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQN--QIPMTLVFTKCDKRKKKKNGG--------KRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~--~l~~~~~~~--~~pvivV~NK~Dl~~~~~~~~--------~~~~~~~~~~~ 267 (308)
.++..+ +++++|+|++++.+..+. .+...+... ++|+++|+||+|+.+...... .+..+....+.
T Consensus 97 ~~~~~~---d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 3th5_A 97 LSYPQT---DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
Confidence 555544 458999999887665543 222223222 799999999999976432100 01122222333
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+.++ ..+++++||++|+|+++++++|.+.+
T Consensus 174 ~~~~-----~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 174 KEIG-----AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 2222 13899999999999999999988653
No 130
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.81 E-value=5e-20 Score=175.42 Aligned_cols=157 Identities=24% Similarity=0.293 Sum_probs=105.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+|+|++.++ .+++..+++|++. ..+.+++ .+.+|||||+.+.....+ .+ ..+...
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve---~~--gi~~~~ 298 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVE---KI--GVERSR 298 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHB-SCCSCCTTCCHHHHHHEEEETTEEEEECC-------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHH---HH--HHHHHh
Confidence 3899999999999999999999754 5677788888754 3445555 799999999854221111 00 112223
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....+|++++|+|++++.+..+.++...+. .+|+++|+||+|+....... . +. .+....++++
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~------~-------~~-~~~~~~~~i~ 362 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT------S-------LE-YPENITQIVH 362 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST------T-------CC-CCTTCCCEEE
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH------H-------HH-HhccCCcEEE
Confidence 3455678899999999988887766666654 48999999999998654311 0 00 1112478999
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 021764 283 TSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+||++|+|+++++++|.+.+..
T Consensus 363 iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 363 TAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EBTTTTBSHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999987753
No 131
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.81 E-value=2.9e-19 Score=161.51 Aligned_cols=160 Identities=23% Similarity=0.250 Sum_probs=109.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcc-cCCCchhhhhchHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYG-YAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~-~~~~~~~~~~~~~~~~~~~ 201 (308)
.+|+|+|++|||||||+|+|++.+. ..++..+++|+.. ..+..++ ++.++||||+. ... ..+.. .+....
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~-~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~--~~l~~---~~~~~~ 82 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK--RAINR---LMNKAA 82 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH--HHHHH---HHTCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-cccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch--hhHHH---HHHHHH
Confidence 3799999999999999999999754 5567777777532 2334444 79999999975 110 00000 011111
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
......+|++++|+|++. .+..+..+...+...++|+++|+||+|+... ...+....+.+.+.++ ...++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~--------~~~~~~~l~~l~~~~~-~~~~i 152 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE--------KADLLPHLQFLASQMN-FLDIV 152 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC--------HHHHHHHHHHHHTTSC-CSEEE
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc--------HHHHHHHHHHHHHhcC-cCceE
Confidence 123456688999999987 7766666666666678999999999998752 1223333333433322 23699
Q ss_pred EeecCCCCCHHHHHHHHHHH
Q 021764 282 MTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~ 301 (308)
++||++|.|++++++++.+.
T Consensus 153 ~iSA~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 153 PISAETGLNVDTIAAIVRKH 172 (301)
T ss_dssp ECCTTTTTTHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998764
No 132
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.81 E-value=1.4e-19 Score=159.72 Aligned_cols=172 Identities=16% Similarity=0.117 Sum_probs=106.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-ceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHH
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-KTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
....++|+|+|.+|||||||+|+|++... ......++ +|.. ...+.+++ ++.+|||||+.......+ .....+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~--~~~~~i 95 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQA-FESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCE--ALYKEV 95 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCC-SCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCH--HHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHH--HHHHHH
Confidence 34567999999999999999999998752 12222232 3332 23444554 799999999875432211 011112
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccC-----CCCEEEEee-cCCCCCcccCCCCCchh--------hH
Q 021764 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQN-----QIPMTLVFT-KCDKRKKKKNGGKRPEE--------NL 263 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~-----~~pvivV~N-K~Dl~~~~~~~~~~~~~--------~~ 263 (308)
.+.+......+|++++|+|++. ....+..+..++... ..|.++|+| |+|+.... ... .+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~------~~~~i~~~~~~~~ 168 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS------LMDYMHDSDNKAL 168 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC------HHHHHHHCCCHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc------HHHHHHhcchHHH
Confidence 2222234456678999999985 454444444555432 567777777 99997431 111 12
Q ss_pred HHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 264 NDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+.+.+.++..+....+ +++||++|.|++++|++|.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 169 SKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHh
Confidence 2333333322110112 889999999999999999998865
No 133
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.80 E-value=3.3e-19 Score=171.01 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=109.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce-----eccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA-----LTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~-----~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
.++|+++|.+|+|||||+++|++..... .....+|+|.+. ..+.+++ .+.+|||||+. .
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~----------~--- 85 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA----------D--- 85 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH----------H---
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH----------H---
Confidence 4699999999999999999999865111 123344555543 2344455 79999999953 2
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-hc
Q 021764 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-FQ 275 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 275 (308)
+.+........+|++++|+|++++...+..+...++...++|+++|+||+|+.+... .++..+++.+.+... ..
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~-----~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEE-----IKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHH-----HHHHHHHHHHHHHHSSSG
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchh-----HHHHHHHHHHHHhhhccc
Confidence 444444556667889999999988777766666677777899999999999985321 122233444444332 11
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
...+++++||++|+|+++|+++|.+.+.
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 2478999999999999999999998765
No 134
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.80 E-value=8.2e-20 Score=152.74 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=94.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--cceeccCCCCceEEEEEEEe------CCCEEEecCCCcccCCCchhhhhchHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRK--KLALTSKTPGKTQCINHFRI------NDSWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~--~~~~~~~~~~~t~~~~~~~~------~~~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
+||+++|.+|||||||+++|++.. +.....++.|.......+.. ...+.+|||+|.. ++..+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~ 72 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE----------EFYST 72 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH----------HHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH----------HHHHh
Confidence 589999999999999999999853 21222233333322222221 1268899999953 33334
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH
Q 021764 198 TKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ 271 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~ViD~~~~~-~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 271 (308)
...|+..++ ++++|+|.+++. +... +..|+. ..+.|+++|+||+|+.+... .........+.+.
T Consensus 73 ~~~~~~~~~---~~i~v~d~~~~~~s~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~ 142 (184)
T 2zej_A 73 HPHFMTQRA---LYLAVYDLSKGQAEVDA--MKPWLFNIKARASSSPVILVGTHLDVSDEKQ-----RKACMSKITKELL 142 (184)
T ss_dssp SHHHHHHSE---EEEEEEEGGGCHHHHHT--HHHHHHHHHHHCTTCEEEEEEECGGGCCHHH-----HHHHHHHHHHHTT
T ss_pred hHHHccCCc---EEEEEEeCCcchhHHHH--HHHHHHHHHhhCCCCcEEEEEECCCcccchh-----hHHHHHHHHHHHH
Confidence 555665543 478899998763 2222 233332 14799999999999975321 1111122222222
Q ss_pred hhhcCCCC----EEEeecCCCC-CHHHHHHHHHHHHHH
Q 021764 272 GFFQTAPP----WIMTSSVTNQ-GRDEILLHMAQLRNY 304 (308)
Q Consensus 272 ~~~~~~~~----~~~vSA~~g~-gi~el~~~i~~~~~~ 304 (308)
+.. ..+ ++++||++|. |++++++.|.+.+.+
T Consensus 143 ~~~--~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 143 NKR--GFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TCT--TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred Hhc--CCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 211 244 9999999997 999999999887653
No 135
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.80 E-value=5.5e-19 Score=155.23 Aligned_cols=171 Identities=14% Similarity=0.128 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+|+|.+|||||||+|+|++.+.........++|.. ...+..++ .+.+|||||+.......+ ...+..+.+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKT-DPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHH-STTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcH-HHHHHHHHH
Confidence 44579999999999999999999997642211222234433 23344444 799999999864332110 112223444
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhH-----HHHHH
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENL-----NDFQE 268 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~-----~~~~~ 268 (308)
.++.....++++++|+|++. ....+..+..++.. .+.|+++++||+|+.... ..+.+ +.+.+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~------~~~~l~~~~~~~l~~ 170 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS------LHDYVSNTENRALRE 170 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC------HHHHHHHCCCHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC------HHHHHhhcccHHHHH
Confidence 44455677888999999985 55555555555543 278999999999997532 22222 12333
Q ss_pred HHHhhhcCCCCEEEeecCC-----CCCHHHHHHHHHHHHHH
Q 021764 269 LIQGFFQTAPPWIMTSSVT-----NQGRDEILLHMAQLRNY 304 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~-----g~gi~el~~~i~~~~~~ 304 (308)
.+... +.+++.+++.. +.|+++|++.|.+++.+
T Consensus 171 l~~~~---g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 171 LVAEC---GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHT---TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHc---CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 33322 24566666554 58999999999998875
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.80 E-value=3.4e-19 Score=167.37 Aligned_cols=163 Identities=15% Similarity=0.190 Sum_probs=103.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcc---eeccCC---------C-CceE-------EEEE-EEeCCCEEEecCCC
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKL---ALTSKT---------P-GKTQ-------CINH-FRINDSWYLVDLPG 180 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~---~~~~~~---------~-~~t~-------~~~~-~~~~~~~~liDtpG 180 (308)
....++|+++|.+|+|||||+|+|++.... ...... + +.+. .... ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 345679999999999999999999984211 000000 0 0000 0000 00013688999999
Q ss_pred cccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccC-CCCEEEEeecCCCCCcccCCCCC
Q 021764 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQN-QIPMTLVFTKCDKRKKKKNGGKR 258 (308)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~-~~~~~~l~~~~~~~-~~pvivV~NK~Dl~~~~~~~~~~ 258 (308)
.. .|...+.. ....+|++++|+|++.+. ..+..+...++... .+|+++|+||+|+.+..+
T Consensus 85 h~----------~~~~~~~~---~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~----- 146 (403)
T 3sjy_A 85 HE----------VLMATMLS---GAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEE----- 146 (403)
T ss_dssp CG----------GGHHHHHH---HHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH-----
T ss_pred cH----------HHHHHHHH---HHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHH-----
Confidence 53 33333333 344567799999999876 44444444444432 359999999999986432
Q ss_pred chhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 259 PEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+..+++.+.+........+++++||++|+|+++|+++|.+.+
T Consensus 147 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 147 ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 22334444444443333457999999999999999999998754
No 137
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.80 E-value=7.2e-19 Score=166.82 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=101.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------e------eccCCCCceEEEEE--EEe
Q 021764 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKL-----------------------A------LTSKTPGKTQCINH--FRI 169 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------~------~~~~~~~~t~~~~~--~~~ 169 (308)
+.....+|+++|.+|+|||||+++|++.... + .....+|+|.+... +..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3455679999999999999999999654210 0 01123567766543 333
Q ss_pred CC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhHHHHHHHhccCCCC-EE
Q 021764 170 ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PIDLEYASWLGQNQIP-MT 240 (308)
Q Consensus 170 ~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~-------~~~~~l~~~~~~~~~p-vi 240 (308)
++ .+.+|||||+. +|...+.. ....+|++++|+|++.+.. .+..+....+...++| ++
T Consensus 93 ~~~~~~iiDTPGh~----------~f~~~~~~---~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iI 159 (439)
T 3j2k_7 93 EKKHFTILDAPGHK----------SFVPNMIG---GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 159 (439)
T ss_pred CCeEEEEEECCChH----------HHHHHHHh---hHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEE
Confidence 33 79999999964 33333333 3445677999999998754 2444445555556788 99
Q ss_pred EEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh---c----CCCCEEEeecCCCCCHHHHHH
Q 021764 241 LVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF---Q----TAPPWIMTSSVTNQGRDEILL 296 (308)
Q Consensus 241 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~vSA~~g~gi~el~~ 296 (308)
+|+||+|+..... ..+..+++.+.+..++ + ...+++++||++|+|++++.+
T Consensus 160 vviNK~Dl~~~~~-----~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 160 VLINKMDDPTVNW-----SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEeecCCCcccch-----HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999999964221 1222222222222211 1 146899999999999999655
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.80 E-value=3.1e-20 Score=174.85 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=105.1
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC--CEEEecCCCcccCCCchhhhhch
Q 021764 119 DCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND--SWYLVDLPGYGYAAAPRELRTDW 194 (308)
Q Consensus 119 ~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~ 194 (308)
..+....++|+++|.+|+|||||+|+|++..+ ...+..+++|... ..+.+.+ .+.+|||||+.+...... ..+
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~--~~~ 104 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNV-SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGR--LRV 104 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCC--CCH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCC-CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhH--HHH
Confidence 34556678999999999999999999998754 4456677776543 3344443 799999999865322111 011
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
. ....++. .+|++++|+|+ .......++..++.+.++|+++|+||+|+..... . +..+.+.+.+
T Consensus 105 ~-~~~~~l~---~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~------~----~~~~~l~~~~ 168 (423)
T 3qq5_A 105 E-KARRVFY---RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKA------E----ELKGLYESRY 168 (423)
T ss_dssp H-HHHHHHT---SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCC------T----HHHHHSSCCT
T ss_pred H-HHHHHHh---cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccH------H----HHHHHHHHHc
Confidence 1 2334443 35669999999 4555566677777778999999999999987542 1 2222222222
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|.|+++++++|.+.+
T Consensus 169 --g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 169 --EAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp --TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred --CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 37899999999999999999998876
No 139
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.79 E-value=8.7e-19 Score=148.29 Aligned_cols=157 Identities=22% Similarity=0.278 Sum_probs=105.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|++|||||||+++|++..+.....++.+.......+.+++ .+.+|||||... ++.+...+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~----------~~~~~~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER----------YRRITSAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG----------TTCCCHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHH
Confidence 46999999999999999999999865444455556655556666666 467899999542 11233344
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+.. .+++++|+|.....+..+. .+...+ ...+.|+++|+||+|+.+... +..+....+.... .
T Consensus 75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----~~~~~a~~l~~~~------~ 141 (199)
T 2f9l_A 75 YRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTDEARAFAEKN------N 141 (199)
T ss_dssp HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHT------T
T ss_pred Hhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC----cCHHHHHHHHHHc------C
Confidence 443 3458999999876544332 111111 125789999999999976433 1233333333322 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+.++++||+++.|+++++++|.+.+..
T Consensus 142 ~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 142 LSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999987754
No 140
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.79 E-value=2.6e-18 Score=161.57 Aligned_cols=163 Identities=21% Similarity=0.233 Sum_probs=102.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEE----EE---------Ee-------------CCCEE
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCIN----HF---------RI-------------NDSWY 174 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~----~~---------~~-------------~~~~~ 174 (308)
+...++|+++|.+++|||||+++|++..... .....+|.|.... .+ .. ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3456799999999999999999999643111 1112233333211 11 00 13589
Q ss_pred EecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccCC-CCEEEEeecCCCCCcc
Q 021764 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKK 252 (308)
Q Consensus 175 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~-~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~ 252 (308)
+|||||+. .+.+.++.....+|++++|+|++++. ..+..+....+...+ .|+++|+||+|+.+..
T Consensus 85 iiDtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 85 FVDSPGHE-------------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEECSSHH-------------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred EEECCCHH-------------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 99999953 25566677777889999999999875 444444333333333 5899999999998643
Q ss_pred cCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 253 KNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
. ..+..+++.+.+........+++++||++|+|+++|+++|.+.+
T Consensus 152 ~-----~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 152 Q-----AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp T-----TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred H-----HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 2 22344555555554333458999999999999999999998754
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=151.25 Aligned_cols=175 Identities=16% Similarity=0.182 Sum_probs=101.2
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCC-chhhhhchH
Q 021764 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAA-PRELRTDWD 195 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~-~~~~~~~~~ 195 (308)
.+....++|+|+|.+|||||||+|+|++........+..++|.. ...+.+++ .+.+|||||+.+... ..+. ..
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~---~~ 100 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAET---SK 100 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHH---HH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHH---HH
Confidence 34456689999999999999999999997642211121134433 23445555 799999999876432 2221 12
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCc--hhhHHHHHH
Q 021764 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRP--EENLNDFQE 268 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~--~~~~~~~~~ 268 (308)
.+.+.+......++++++|+|++.... .+.....++. ...+|+++|+||+|+.........+. .+.++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 344444455566788999999985443 3333333332 23469999999999976543110000 123344433
Q ss_pred HHHhhhcCCCCEEEeecCCC-----CCHHHHHHHHHHHHHH
Q 021764 269 LIQGFFQTAPPWIMTSSVTN-----QGRDEILLHMAQLRNY 304 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g-----~gi~el~~~i~~~~~~ 304 (308)
.++ ..++.+++..+ .|+.+|++.+.+++.+
T Consensus 180 ~~~------~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFG------DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHS------SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcC------CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 332 46777777654 7899999999888754
No 142
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.79 E-value=5.9e-18 Score=156.47 Aligned_cols=164 Identities=20% Similarity=0.257 Sum_probs=105.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
.+.++|+++|.+|||||||+|+|++.. ......+++|... ..+..++ .+.+|||||+.+.... +.. . +..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~-~---~~~ 237 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPIS-ERN-E---IEK 237 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCST-TSC-H---HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchh-hhh-H---HHH
Confidence 456799999999999999999999975 2344455555433 3333333 6899999998653211 100 0 111
Q ss_pred HHH-HhcCCccEEEEEEeCCCCC--ChhH-HHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021764 200 DYF-LNRSTLVSVFLLIDASIPA--KPID-LEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~-~~~~~~~~vl~ViD~~~~~--~~~~-~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..+ .....++++++|+|++... +... ..+...+.. .++|+++|+||+|+.... .+++..+.+..
T Consensus 238 ~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~---------~~~~~~~~~~~- 307 (357)
T 2e87_A 238 QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE---------NIKRLEKFVKE- 307 (357)
T ss_dssp HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH---------HHHHHHHHHHH-
T ss_pred HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH---------HHHHHHHHHHh-
Confidence 111 1122356799999988754 3332 122222221 289999999999997532 13333333322
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
...+++++||++|+|+++++++|.+.+...
T Consensus 308 --~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 308 --KGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp --TTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred --cCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 247899999999999999999999988654
No 143
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.78 E-value=2.3e-19 Score=163.12 Aligned_cols=161 Identities=18% Similarity=0.132 Sum_probs=102.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||++++++..+.....++.+... ...+..++ .+.+|||||... +...+..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 222 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLED----------YDRLRPL 222 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGG----------GTTTGGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchh----------hhHHHHH
Confidence 346999999999999999999998754332222222111 22334444 466999999642 2223333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHH
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQE 268 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~ 268 (308)
++. .++++++|+|++++.+..+.. +...+.. .++|+++|+||+|+..... ....+..+....+.+
T Consensus 223 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 299 (332)
T 2wkq_A 223 SYP---QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 299 (332)
T ss_dssp GCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred hcc---CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence 333 345699999999866554431 2222222 3899999999999975321 001123344444444
Q ss_pred HHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 269 LIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+ ..+++++||++|+|++++|++|.+.+-
T Consensus 300 ~~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 300 EIG-----AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HTT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcC-----CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 332 238999999999999999999988653
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=8.6e-19 Score=158.81 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=100.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC--CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||+++|.+|||||||+++|++... ...+..+++|... ..+.+++ .+.+|||||.... ....+...+..+
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~-~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~~ 77 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS-AFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDHI 77 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC-TGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHHH
Confidence 5999999999999999999998732 3445555555543 3333333 7899999996321 000002244455
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCch----hhHHHHHHHHH
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPE----ENLNDFQELIQ 271 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~-l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~----~~~~~~~~~~~ 271 (308)
+.. ++++++|+|+++..+..+.. +..++. ..++|+++|+||+|+.+... .. ...++..+..
T Consensus 78 ~~~---ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~-----r~~~~~v~~~~~~~~~- 148 (307)
T 3r7w_A 78 FQM---VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDK-----REELFQIMMKNLSETS- 148 (307)
T ss_dssp HTT---CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHH-----HHHHHHHHHHHHHHHH-
T ss_pred hcc---CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhh-----hhHHHHHHHHHHHHHH-
Confidence 544 45699999999887666542 233332 24799999999999986221 11 0112222222
Q ss_pred hhhcC-CCCEEEeecCCCCCHHHHHHHHHH
Q 021764 272 GFFQT-APPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 272 ~~~~~-~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
..++. .++++++||++ .|+.++|..+.+
T Consensus 149 ~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 149 SEFGFPNLIGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp HTTTCCSCEEEECCTTS-SHHHHHHHHHHH
T ss_pred HHcCCCCeEEEEeeecC-ChHHHHHHHHHH
Confidence 22221 37899999999 889888887765
No 145
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.78 E-value=2.8e-18 Score=161.45 Aligned_cols=163 Identities=21% Similarity=0.243 Sum_probs=107.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEE----EEEEe----------------------CCCEE
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCI----NHFRI----------------------NDSWY 174 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~----~~~~~----------------------~~~~~ 174 (308)
+...++|+++|.+|+|||||+++|++..... .....+|.|... ..+.. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3445799999999999999999999642111 111223333321 11100 13589
Q ss_pred EecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhcc-CCCCEEEEeecCCCCCcc
Q 021764 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQ-NQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 175 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~-~~~~~~l~~~~~~-~~~pvivV~NK~Dl~~~~ 252 (308)
+|||||+. .+...++.....+|++++|+|++++. ..+..+....+.. ...|+++|+||+|+.+..
T Consensus 87 iiDtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 87 FIDAPGHE-------------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEECSSHH-------------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred EEECCChH-------------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence 99999953 25566667777788899999999875 4444433333332 235899999999998643
Q ss_pred cCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 253 KNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
. ..+..+++.+.+........+++++||++|+|+++|+++|.+.+
T Consensus 154 ~-----~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 154 K-----ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp H-----HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred H-----HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 1 12334445555543323457999999999999999999998754
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.77 E-value=7.4e-18 Score=156.00 Aligned_cols=171 Identities=20% Similarity=0.220 Sum_probs=101.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHH
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
+.+.+.|+|+|.+|||||||+|+|++... .+...+++|.+ ...+.+++ .+.++||||+..... ..+...|...
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp-~~lve~f~~t- 251 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP-PQIVDAFFVT- 251 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCC-GGGHHHHHHH-
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCC-HHHHHHHHHH-
Confidence 34566699999999999999999999753 34556666643 34555655 789999999865321 1211123222
Q ss_pred HHHHHhcCCccEEEEEEeCCCCC--ChhHH----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 199 KDYFLNRSTLVSVFLLIDASIPA--KPIDL----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~ViD~~~~~--~~~~~----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
+.....+|++++|+|++++. ..... ++...+...++|+++|+||+|+.+.. .........+....
T Consensus 252 ---l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~------~~~~~~~~~~l~~~ 322 (364)
T 2qtf_A 252 ---LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD------LYKKLDLVEKLSKE 322 (364)
T ss_dssp ---HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC------HHHHHHHHHHHHHH
T ss_pred ---HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch------HHHHHHHHHHHHHH
Confidence 23345567799999998764 12111 22222333679999999999997532 11111121111111
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
......+++++||++|+|+++++++|.+.+...
T Consensus 323 l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 323 LYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp HCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 101124689999999999999999999987654
No 147
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.77 E-value=2.7e-18 Score=144.59 Aligned_cols=155 Identities=22% Similarity=0.272 Sum_probs=104.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+|+|++|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||+|..... .++..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----------AITSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----------CCCHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----------hhhHHH
Confidence 46999999999999999999999865444555666655556666666 35679999974311 133445
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021764 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~ViD~~~~~~~~~~~-l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+... +++++|+|..+..+..+.. +...+ ...+.|+++|+||+|+.+... +..+....+.... .
T Consensus 99 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----~~~~~a~~l~~~~------~ 165 (191)
T 1oix_A 99 YRGA---VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTDEARAFAEKN------G 165 (191)
T ss_dssp HTTC---CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT------T
T ss_pred hhcC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc----cCHHHHHHHHHHc------C
Confidence 4433 3488999998654433321 11111 134789999999999975432 1233333333322 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++||+++.|+++++++|.+.+
T Consensus 166 ~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 166 LSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999998754
No 148
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.76 E-value=2.8e-18 Score=165.94 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc--------------eec------cCCCCceEE--EEEEEeCC-CEEEecCCC
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL--------------ALT------SKTPGKTQC--INHFRIND-SWYLVDLPG 180 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~--------------~~~------~~~~~~t~~--~~~~~~~~-~~~liDtpG 180 (308)
..++|+|+|.+|||||||+++|+..... ... ...+|.|.. ...+.+++ .+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 3469999999999999999999721100 000 001233322 23444544 799999999
Q ss_pred cccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021764 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+.+ |...+..++ ..+|++++|+|++.+.......+...+...++|+++|+||+|+...
T Consensus 92 ~~d----------f~~~~~~~l---~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HAD----------FTEDTYRTL---TAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STT----------CCHHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred chh----------HHHHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 753 222333443 4456799999999998888887777787889999999999999753
No 149
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.76 E-value=6.7e-19 Score=162.55 Aligned_cols=169 Identities=21% Similarity=0.241 Sum_probs=109.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcce----eccCCCCce----------------------EE-------------
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLA----LTSKTPGKT----------------------QC------------- 163 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~----~~~~~~~~t----------------------~~------------- 163 (308)
...++|+++|.+|||||||+|+|++.++.+ .++..|+.+ +.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999976532 333344411 11
Q ss_pred -------------EEEEEe-CCCEEEecCCCcccCCC---chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH
Q 021764 164 -------------INHFRI-NDSWYLVDLPGYGYAAA---PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226 (308)
Q Consensus 164 -------------~~~~~~-~~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~ 226 (308)
...+.. ...+++|||||+..... ...+...+..+...|+.... +++++|+|++......+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~iiL~v~~a~~~~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKEN--CLILAVSPANSDLANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTT--EEEEEEEETTSCGGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCC--eEEEEEecCCCccchhHH
Confidence 000111 23799999999875321 22222356667778776544 357888888765554443
Q ss_pred -HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc---CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 227 -EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ---TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 227 -~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++.+.+...+.|+++|+||+|+.+.... ...+.+ ...+. ...+++++||+++.|++++++++.+..
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~--------~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~ 256 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTD--------ARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 256 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCC--------CHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchh--------HHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHHHH
Confidence 3666776778999999999999864320 111111 11111 124678899999999999999998744
Q ss_pred H
Q 021764 303 N 303 (308)
Q Consensus 303 ~ 303 (308)
.
T Consensus 257 ~ 257 (353)
T 2x2e_A 257 K 257 (353)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.75 E-value=3.7e-18 Score=158.35 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=100.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+|+++|.+|+|||||+++|+.. |.|.+ ...+..++ .+.+|||||+.+ |...+..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~----------f~~~~~~--- 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPK----------TLKSLIT--- 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTT----------CHHHHHH---
T ss_pred EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHH----------HHHHHHH---
Confidence 8999999999999999999821 12221 12233333 799999999742 2222223
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCE-EEEee-cCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPM-TLVFT-KCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 204 ~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pv-ivV~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
....+|++++|+| +.+...+..+...++...++|. ++|+| |+|+ +... ..+..+++.+.+........+++
T Consensus 80 ~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~-----~~~~~~~i~~~l~~~~~~~~~ii 152 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHA-----IDELKAKLKVITSGTVLQDWECI 152 (370)
T ss_dssp HHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHH-----HHHHHHHHHHHTTTSTTTTCEEE
T ss_pred HHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHH-----HHHHHHHHHHHHHhcCCCceEEE
Confidence 3345667999999 7777666666666666678888 99999 9999 4321 11222333333332211347899
Q ss_pred E--eecCC---CCCHHHHHHHHHHHHHH
Q 021764 282 M--TSSVT---NQGRDEILLHMAQLRNY 304 (308)
Q Consensus 282 ~--vSA~~---g~gi~el~~~i~~~~~~ 304 (308)
+ +||++ ++|+++++++|.+.+..
T Consensus 153 ~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 153 SLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp ECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred ecccccccCcCCCCHHHHHHHHHhhccc
Confidence 9 99999 99999999999988754
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.74 E-value=4.5e-18 Score=163.32 Aligned_cols=150 Identities=18% Similarity=0.254 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------------eeccCCCCceEEEEE--EEeCC-
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL-----------------------------ALTSKTPGKTQCINH--FRIND- 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~--~~~~~- 171 (308)
...+|+++|.+|+|||||+++|++.... ......+|+|.+... +..++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 3469999999999999999999864110 011123455554333 33333
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-------ChhHHHHHHHhccCC-CCEEEEe
Q 021764 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-------KPIDLEYASWLGQNQ-IPMTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~-------~~~~~~l~~~~~~~~-~pvivV~ 243 (308)
.+.+|||||+. +|...+..++ ..+|++++|+|++.+. ..+..+...++...+ .|+++|+
T Consensus 112 ~~~iiDTPG~~----------~f~~~~~~~~---~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 112 NFTIVDAPGHR----------DFVPNAIMGI---SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp EEEEECCCCCG----------GGHHHHHHHH---TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCcH----------HHHHHHHHhh---hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence 79999999974 3444444444 4456799999999863 234444455555445 5699999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhh---c---CCCCEEEeecCCCCCHHH
Q 021764 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFF---Q---TAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~vSA~~g~gi~e 293 (308)
||+|+.+.. ....+++.+.+...+ + ...+++++||++|+|+++
T Consensus 179 NK~Dl~~~~-------~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 179 NKMDNVDWS-------QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp ECGGGGTTC-------HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ECcCcccch-------HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 999998632 122222222222211 1 146899999999999985
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.74 E-value=2.8e-19 Score=172.54 Aligned_cols=161 Identities=17% Similarity=0.256 Sum_probs=109.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEe--CCCEEEecCCCcccCCCchhhhhchHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRI--NDSWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..++|+++|.+|+|||||+++|.+..+. ....+++|..... +.. +..+.+|||||+.... .++.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~--~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~----------~~~~ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA--AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS----------AMRA 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH--HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT----------TSBB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH----------HHHH
Confidence 3568999999999999999999986532 2345566554322 222 2379999999964311 1222
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
.....+|++++|+|++++...+..+...++...++|+++|+||+|+.+..... ....+..+. .....+....+
T Consensus 71 ---~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~---v~~~l~~~~-~~~e~~~~~~~ 143 (537)
T 3izy_P 71 ---RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEK---VKKELLAYD-VVCEDYGGDVQ 143 (537)
T ss_dssp ---SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCS---SSSHHHHTT-SCCCCSSSSEE
T ss_pred ---HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHH---HHHHHHhhh-hhHHhcCCCce
Confidence 22344566999999999888888877777777899999999999997543211 111121110 00011122358
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Q 021764 280 WIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++++||++|+|+++++++|..++.
T Consensus 144 iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 144 AVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCchhHHHHHHHhhh
Confidence 999999999999999999988764
No 153
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.74 E-value=9.9e-19 Score=169.95 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=92.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE------EEEe-----CCCEEEecCCCcccCCCchhhh
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN------HFRI-----NDSWYLVDLPGYGYAAAPRELR 191 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~------~~~~-----~~~~~liDtpG~~~~~~~~~~~ 191 (308)
...+||+++|.+|||||||+++|++..+.....++.+.+.... .+.. ...+.+|||||...
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~-------- 110 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI-------- 110 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT--------
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH--------
Confidence 4457999999999999999999999865444444444443321 1111 12699999999532
Q ss_pred hchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021764 192 TDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
+..+...|+.. ++++++|+|+++... ...+...+.. .++|+++|+||+|+.+..+ +.. +.+.+.
T Consensus 111 --~~~~~~~~l~~---~d~ii~V~D~s~~~~--~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----v~~---~~~~~~ 176 (535)
T 3dpu_A 111 --MHASHQFFMTR---SSVYMLLLDSRTDSN--KHYWLRHIEKYGGKSPVIVVMNKIDENPSYN----IEQ---KKINER 176 (535)
T ss_dssp --TTTTCHHHHHS---SEEEEEEECGGGGGG--HHHHHHHHHHHSSSCCEEEEECCTTTCTTCC----CCH---HHHHHH
T ss_pred --HHHHHHHHccC---CcEEEEEEeCCCchh--HHHHHHHHHHhCCCCCEEEEEECCCcccccc----cCH---HHHHHH
Confidence 11233344444 456999999986522 1222333332 4699999999999986543 122 223333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
... ...+++++||++|.|+++++++|.+.+..
T Consensus 177 ~~~---~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 177 FPA---IENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CGG---GTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHh---cCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 322 13689999999999999999999987653
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.74 E-value=4.2e-18 Score=160.06 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=104.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC--------Cccee-cc------CCCCceEEEEE--EEeC-CCEEEecCCCcccCC
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRR--------KKLAL-TS------KTPGKTQCINH--FRIN-DSWYLVDLPGYGYAA 185 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~--------~~~~~-~~------~~~~~t~~~~~--~~~~-~~~~liDtpG~~~~~ 185 (308)
..++|+++|.+|+|||||+++|++. .+... .. ...|.|..... +..+ ..+.+|||||+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~--- 86 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA--- 86 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG---
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH---
Confidence 4469999999999999999999973 11110 00 12344544333 3333 379999999964
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHH
Q 021764 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
+|...+..++. .+|++++|+|++++...+..+...++...++| +++|+||+|+....+ ..+...+
T Consensus 87 -------~f~~~~~~~~~---~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~----~~~~~~~ 152 (405)
T 2c78_A 87 -------DYIKNMITGAA---QMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPE----LLDLVEM 152 (405)
T ss_dssp -------GGHHHHHHHHT---TCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHH----HHHHHHH
T ss_pred -------HHHHHHHHHHH---HCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHH----HHHHHHH
Confidence 33334444443 45569999999988877776666666667889 889999999985211 0111122
Q ss_pred HHHHHHHhhhc--CCCCEEEeecCCCCC------------------HHHHHHHHHHH
Q 021764 265 DFQELIQGFFQ--TAPPWIMTSSVTNQG------------------RDEILLHMAQL 301 (308)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~vSA~~g~g------------------i~el~~~i~~~ 301 (308)
++.+.+..... ...+++++||++|.| +++|+++|.+.
T Consensus 153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 209 (405)
T 2c78_A 153 EVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEY 209 (405)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhh
Confidence 33333332211 237899999999987 67777776654
No 155
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=146.64 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=57.8
Q ss_pred CccEEEEEEeCCCC--CChhHHH-HHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021764 207 TLVSVFLLIDASIP--AKPIDLE-YASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 207 ~~~~vl~ViD~~~~--~~~~~~~-l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
.++++++|+|++++ .+..... +...+ ...++|+++|+||+|+..... +++..+..... ...+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~---------v~~~~~~~~~~--~~~~ 230 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY---------IRDAHTFALSK--KNLQ 230 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH---------HHHHHHHHHTS--SSCC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH---------HHHHHHHHHhc--CCCe
Confidence 35779999999987 6654431 11111 235799999999999965321 23333332221 2478
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Q 021764 280 WIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++++||++|.|++++|++|.+.+.
T Consensus 231 ~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 231 VVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999988764
No 156
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.73 E-value=1.2e-17 Score=151.30 Aligned_cols=169 Identities=19% Similarity=0.239 Sum_probs=100.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcc----eeccCCCC---ceEE-------------------------------
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKL----ALTSKTPG---KTQC------------------------------- 163 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~----~~~~~~~~---~t~~------------------------------- 163 (308)
....++|+|+|.+|||||||+|+|++..+. ..++..|+ ++..
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 345679999999999999999999997642 22333442 1110
Q ss_pred -------------------EEE---EEeC-CCEEEecCCCcccCCC---chhhhhchHHHHHHHHHhcCCccEEEEEEeC
Q 021764 164 -------------------INH---FRIN-DSWYLVDLPGYGYAAA---PRELRTDWDKFTKDYFLNRSTLVSVFLLIDA 217 (308)
Q Consensus 164 -------------------~~~---~~~~-~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~ 217 (308)
... +..+ .++.+|||||+..... ...+...+......|+..+ |++++|+|+
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~iilvvd~ 177 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQ---NAIIVAVTP 177 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHST---TEEEEEEEE
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCC---CeEEEEEEe
Confidence 000 1112 3799999999864211 1122234555666666554 458899997
Q ss_pred -CCCCChh-HHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC---C---CC
Q 021764 218 -SIPAKPI-DLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV---T---NQ 289 (308)
Q Consensus 218 -~~~~~~~-~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~---~---g~ 289 (308)
+...... ...+..++...++|+++|+||+|+..... ...+.+.. ........++++|+. + +.
T Consensus 178 ~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~-------~~~~~~~~---~~~~~~~~~~~v~~~sa~~~~~~~ 247 (315)
T 1jwy_B 178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT-------DAMEVLTG---RVIPLTLGFIGVINRSQEDIIAKK 247 (315)
T ss_dssp SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC-------CCHHHHTT---SSSCCTTCEEECCCCCHHHHSSSC
T ss_pred cCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch-------HHHHHHhC---CCccCCCCeEEEecCChhhhccCC
Confidence 4443323 34677788778899999999999986432 11222211 111111456666554 4 78
Q ss_pred CHHHHHHHHHHHHH
Q 021764 290 GRDEILLHMAQLRN 303 (308)
Q Consensus 290 gi~el~~~i~~~~~ 303 (308)
|++++++.+.+.+.
T Consensus 248 gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 248 SIRESLKSEILYFK 261 (315)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999887765
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.73 E-value=1.3e-17 Score=156.24 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=106.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-------ccee-------ccCCCCceEEEEEEEe--C-CCEEEecCCCcccCCCch
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRK-------KLAL-------TSKTPGKTQCINHFRI--N-DSWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~-------~~~~-------~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~ 188 (308)
.+|+++|.+|+|||||+++|++.. +... .....|.|.......+ + ..+.+|||||+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~------ 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA------ 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH------
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH------
Confidence 589999999999999999999731 1000 0113466665443333 3 379999999953
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021764 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
+ +..........+|++++|+|++++...+..+...++...++| +++|+||+|+.+..+ ..+...+++.
T Consensus 78 ----~---f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~----~~~~~~~~~~ 146 (397)
T 1d2e_A 78 ----D---YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSE----MVELVELEIR 146 (397)
T ss_dssp ----H---HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHH----HHHHHHHHHH
T ss_pred ----H---HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHH----HHHHHHHHHH
Confidence 2 333444555677889999999998777766666666667889 689999999975211 0111122333
Q ss_pred HHHHhhh--cCCCCEEEeecCCCCC----------HHHHHHHHHHHH
Q 021764 268 ELIQGFF--QTAPPWIMTSSVTNQG----------RDEILLHMAQLR 302 (308)
Q Consensus 268 ~~~~~~~--~~~~~~~~vSA~~g~g----------i~el~~~i~~~~ 302 (308)
+.+.... ....+++++||++|.| +++|+++|.+.+
T Consensus 147 ~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 3333221 1237999999999775 888998887654
No 158
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.73 E-value=1.7e-17 Score=150.23 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=95.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceec----cCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHH---HHH
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRKKLALT----SKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDK---FTK 199 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~---~~~ 199 (308)
||+++|.+|||||||++++.+..+ +.. .++.|... ..+...-++.+|||+|..+ |+. ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~--~~v~~~v~LqIWDTAGQEr----------f~~~~l~~~ 67 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSL--EHFSTLIDLAVMELPGQLN----------YFEPSYDSE 67 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCC--EEECSSSCEEEEECCSCSS----------SCCCSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeee--EEEccEEEEEEEECCCchh----------ccchhhhhh
Confidence 689999999999999999887532 221 22223222 2222123799999999643 221 356
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.||+.+. ++++|+|.++........+..|+. ..+.|+++|+||+|+....+ ..+..+.+.....+.+
T Consensus 68 ~yyr~a~---~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~-----R~~~~R~V~~~~~~~l 139 (331)
T 3r7w_B 68 RLFKSVG---ALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDF-----KVDAQRDIMQRTGEEL 139 (331)
T ss_dssp HHHTTCS---EEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHH-----HHHHHHHHHHHHHHTT
T ss_pred hhccCCC---EEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhh-----hhhHHHHhhHHHHHHH
Confidence 7776655 489999999862222223333332 25799999999999985321 0111122323222222
Q ss_pred c------CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021764 275 Q------TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 ~------~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
. ..++|+++||++ .||.+.|..+.+.
T Consensus 140 a~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~ 171 (331)
T 3r7w_B 140 LELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQK 171 (331)
T ss_dssp SSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTT
T ss_pred HhhcccccCceEEEeccCC-CcHHHHHHHHHHH
Confidence 2 247899999998 5899999888754
No 159
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.72 E-value=2.5e-17 Score=161.15 Aligned_cols=164 Identities=19% Similarity=0.264 Sum_probs=104.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-CceEE--EEEEEe-----------CC--------CEEEecCCCcc
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-GKTQC--INHFRI-----------ND--------SWYLVDLPGYG 182 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-~~t~~--~~~~~~-----------~~--------~~~liDtpG~~ 182 (308)
.++|+++|.+|+|||||+++|++... ....+ +.|.. ...+.. ++ .+.+|||||+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v---~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAV---ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH---SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC---ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 46999999999999999999997532 11111 22211 111111 01 38999999975
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCC--C---
Q 021764 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGG--K--- 257 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~--~--- 257 (308)
.... ++. +....+|++++|+|++++...+..+...++...++|+++|+||+|+........ .
T Consensus 82 ~F~~----------~~~---r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e 148 (594)
T 1g7s_A 82 AFTT----------LRK---RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFME 148 (594)
T ss_dssp CCTT----------SBC---SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred HHHH----------HHH---HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHH
Confidence 3221 111 223456789999999998877777767777778999999999999975321000 0
Q ss_pred ----Cch---hh----HHHHHHHHHhh-h-----------cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 258 ----RPE---EN----LNDFQELIQGF-F-----------QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 258 ----~~~---~~----~~~~~~~~~~~-~-----------~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
... +. +.++.+.+.+. + ....+++++||++|.|+++|+++|.+.+..
T Consensus 149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 001 11 11222222211 1 123589999999999999999999987754
No 160
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.72 E-value=2.2e-17 Score=161.51 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=98.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-c------eec------cCCCCceEEEE--EEEe---CC---CEEEecCCCcc
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-L------ALT------SKTPGKTQCIN--HFRI---ND---SWYLVDLPGYG 182 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-~------~~~------~~~~~~t~~~~--~~~~---~~---~~~liDtpG~~ 182 (308)
...+|+|+|.+|+|||||+++|+.... . ..+ ....|.|.... .+.+ ++ .+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 356999999999999999999986311 0 001 11234444322 2222 22 58899999974
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhh
Q 021764 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEEN 262 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~ 262 (308)
.|...+..++..+ |++++|+|++++...+...........++|+++|+||+|+.... ..+.
T Consensus 83 ----------dF~~ev~~~l~~a---D~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~------~~~v 143 (599)
T 3cb4_D 83 ----------DFSYEVSRSLAAC---EGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD------PERV 143 (599)
T ss_dssp ----------GGHHHHHHHHHHC---SEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC------HHHH
T ss_pred ----------HHHHHHHHHHHHC---CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc------HHHH
Confidence 3444555555554 55899999999888777655555556789999999999998642 2233
Q ss_pred HHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 263 LNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++.+.++ ....+++++||++|.|+++++++|.+.+
T Consensus 144 ~~ei~~~lg---~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 144 AEEIEDIVG---IDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp HHHHHHHTC---CCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred HHHHHHHhC---CCcceEEEeecccCCCchhHHHHHhhcC
Confidence 344433332 1124699999999999999999998764
No 161
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.72 E-value=6.8e-17 Score=161.22 Aligned_cols=169 Identities=16% Similarity=0.249 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCc--------------eEEE------E------------------
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGK--------------TQCI------N------------------ 165 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~--------------t~~~------~------------------ 165 (308)
..++|+|+|.+|+|||||+|+|++.+. ..++..|++ +... .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~-~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL-LPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC-SCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 346999999999999999999999753 344555555 2211 0
Q ss_pred -----------------EEEeC-----CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCCh
Q 021764 166 -----------------HFRIN-----DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223 (308)
Q Consensus 166 -----------------~~~~~-----~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~ 223 (308)
.+.+. ..+.+|||||+..... ....+..|+.. +|++++|+|++.+.+.
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~~---aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVNN---CHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHHS---SSEEEEEEETTSTTCH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHHh---CCEEEEEEeCCCccch
Confidence 00000 3689999999864221 12355566654 4569999999988887
Q ss_pred hHHHHH-HHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHH----HH----HHHHhhhc------CCCCEEEeecC--
Q 021764 224 IDLEYA-SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLND----FQ----ELIQGFFQ------TAPPWIMTSSV-- 286 (308)
Q Consensus 224 ~~~~l~-~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~----~~----~~~~~~~~------~~~~~~~vSA~-- 286 (308)
.+.++. ..+...++|+++|+||+|+......... ..+.++. +. +.+..... ...++++|||+
T Consensus 217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~e-e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~a 295 (695)
T 2j69_A 217 GERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPD-DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQA 295 (695)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTT-CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHH
T ss_pred hHHHHHHHHHHhhCCCEEEEEECcccccccccChh-hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHH
Confidence 776544 3455568899999999999754311000 0011211 21 22222211 23579999999
Q ss_pred ------------CCCCHHHHHHHHHHHHHH
Q 021764 287 ------------TNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 287 ------------~g~gi~el~~~i~~~~~~ 304 (308)
++.|+++++++|.+.+..
T Consensus 296 l~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 296 LRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 162
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=152.31 Aligned_cols=166 Identities=21% Similarity=0.261 Sum_probs=84.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCccee-ccC------CCCceEEEEEE--EeCC---CEEEecCCCcccCCCchhhhh
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLAL-TSK------TPGKTQCINHF--RIND---SWYLVDLPGYGYAAAPRELRT 192 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~-~~~------~~~~t~~~~~~--~~~~---~~~liDtpG~~~~~~~~~~~~ 192 (308)
.++|+|+|.+|+|||||+|+|++...... ..+ .++.+.....+ ..++ .+.+|||||+.+.....+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e--- 113 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD--- 113 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC---------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH---
Confidence 36899999999999999999887542111 100 12222222222 2222 589999999865322111
Q ss_pred chHHHH-------HHHHHhcCCc----------cEEEEEEeC-CCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccC
Q 021764 193 DWDKFT-------KDYFLNRSTL----------VSVFLLIDA-SIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKN 254 (308)
Q Consensus 193 ~~~~~~-------~~~~~~~~~~----------~~vl~ViD~-~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~ 254 (308)
.|..+. ..|+....++ ++++|+++. ..+....+.++...+. .++|+|+|+||+|+....
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~-- 190 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLK-- 190 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHH--
Confidence 122222 2666655443 367788876 5556666666666664 579999999999998533
Q ss_pred CCCCchhhHHHHHHHHHhhhc-CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 255 GGKRPEENLNDFQELIQGFFQ-TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+..+.+.+..... .+++++++||+++.| ++.|.++.+.+..
T Consensus 191 -------ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 191 -------ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp -------HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 23333333332222 347899999999999 8888777766543
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=2.5e-17 Score=156.13 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc---------eeccCC----------------------CCceEEE--EEEEeC
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL---------ALTSKT----------------------PGKTQCI--NHFRIN 170 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~---------~~~~~~----------------------~~~t~~~--~~~~~~ 170 (308)
..++|+++|.+|+|||||+++|++.... ...+.. .|.|.+. ..+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 4469999999999999999999875310 001111 1233322 223333
Q ss_pred C-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-CEEEEeecCCC
Q 021764 171 D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-PMTLVFTKCDK 248 (308)
Q Consensus 171 ~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~-pvivV~NK~Dl 248 (308)
+ ++.+|||||+. +|...+..++ ..+|++++|+|++++...+..+...++...+. |+++|+||+|+
T Consensus 103 ~~~~~iiDtpGh~----------~f~~~~~~~~---~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHE----------QYTRNMATGA---STCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSG----------GGHHHHHHHH---TTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChH----------HHHHHHHHHH---hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence 3 69999999964 3333444443 45567999999998877666555555555565 59999999999
Q ss_pred CCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHHHH
Q 021764 249 RKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDEIL 295 (308)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~el~ 295 (308)
.+.... ...+..+++.+.+.... ....+++++||++|+|+++++
T Consensus 170 ~~~~~~---~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 170 NGFDER---VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TTSCHH---HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred CcccHH---HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 853110 01112233333333221 123689999999999998843
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.71 E-value=1.7e-18 Score=165.80 Aligned_cols=158 Identities=20% Similarity=0.301 Sum_probs=102.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|+|||||+++|.+.... ....+|+|.... .+.+++ .+.+|||||+..... ++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~--~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~----------~~-- 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA--SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS----------MR-- 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS--BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT----------SB--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc--cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH----------HH--
Confidence 4568999999999999999999875321 222344444332 222333 799999999753211 11
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
.+....+|++++|+|++++...+..+....+...++|+++++||+|+....... ....+.+. ..+.+.+....++
T Consensus 69 -~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~---v~~~l~~~-~~~~~~~~~~~~~ 143 (501)
T 1zo1_I 69 -ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDR---VKNELSQY-GILPEEWGGESQF 143 (501)
T ss_dssp -CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCC---TTCCCCCC-CCCTTCCSSSCEE
T ss_pred -HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHH---HHHHHHHh-hhhHHHhCCCccE
Confidence 133455677999999998766665555666666789999999999997532110 00000000 0001111223689
Q ss_pred EEeecCCCCCHHHHHHHHHH
Q 021764 281 IMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~ 300 (308)
+++||++|+|+++++++|..
T Consensus 144 v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 144 VHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EECCTTTCTTCTTHHHHTTT
T ss_pred EEEeeeeccCcchhhhhhhh
Confidence 99999999999999999864
No 165
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2.5e-17 Score=140.96 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCccee-ccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLAL-TSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
....++|+++|.+|||||||+++|++..+... .+..++++... ....+.+|||||.. .++..+..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~----------~~~~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHV----------KLRYKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCG----------GGTHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcH----------HHHHHHHH
Confidence 34567999999999999999999999764221 12222221111 22379999999974 34446666
Q ss_pred HHHhc-CCccEEEEEEeCC-CCCChhH--HHHHHHhc------cCCCCEEEEeecCCCCCcc
Q 021764 201 YFLNR-STLVSVFLLIDAS-IPAKPID--LEYASWLG------QNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 201 ~~~~~-~~~~~vl~ViD~~-~~~~~~~--~~l~~~~~------~~~~pvivV~NK~Dl~~~~ 252 (308)
|+... ..++++++|+|++ +..+... ..+..++. ..++|+++|+||+|+....
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 66542 2346699999998 5444332 22222222 2589999999999998654
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.9e-17 Score=162.85 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=98.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceecc------------------------------CCCCceEEEE--EEEeC
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTS------------------------------KTPGKTQCIN--HFRIN 170 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~------------------------------~~~~~t~~~~--~~~~~ 170 (308)
...++|+++|.+|+|||||+++|++... .+.. ..+|+|.+.. .+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~-~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN-IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS-CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC-CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4467999999999999999999997632 1111 0245665432 23333
Q ss_pred C-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-------CChhHHHHHHHhccCCCC-EEE
Q 021764 171 D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-------AKPIDLEYASWLGQNQIP-MTL 241 (308)
Q Consensus 171 ~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~-------~~~~~~~l~~~~~~~~~p-viv 241 (308)
+ ++.+|||||+.. +.+........+|++++|+|++.+ ...+..+...++...+.| +++
T Consensus 244 ~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 3 799999999742 444555566677889999999864 122333444444445554 999
Q ss_pred EeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHHH
Q 021764 242 VFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 242 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~el 294 (308)
|+||+|+.+.... ...+..+++...+.... ....+++++||++|.|++++
T Consensus 311 VvNKiDl~~~~~~---~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 311 AMNKMDNVDWSQQ---RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEECTTTTTTCHH---HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEecccccchhHH---HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9999999863210 01111222222222111 11378999999999999875
No 167
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.70 E-value=5.3e-17 Score=158.61 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-c------eecc------CCCCceEEE--EEEEe---CC---CEEEecCCCcc
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-L------ALTS------KTPGKTQCI--NHFRI---ND---SWYLVDLPGYG 182 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-~------~~~~------~~~~~t~~~--~~~~~---~~---~~~liDtpG~~ 182 (308)
..++|+++|.+|+|||||+++|+.... . ..+. ...|.|... ..+.+ ++ .+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 456999999999999999999986311 0 0000 112333321 11222 22 57899999975
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhh
Q 021764 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEEN 262 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~ 262 (308)
.|...+..++. .+|++++|+|++++...+..+........++|+++|+||+|+.... .
T Consensus 85 ----------dF~~ev~r~l~---~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~------~--- 142 (600)
T 2ywe_A 85 ----------DFSYEVSRALA---ACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD------V--- 142 (600)
T ss_dssp ----------GGHHHHHHHHH---TCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC------H---
T ss_pred ----------hHHHHHHHHHH---hCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC------H---
Confidence 33334445444 3456999999999888777665555556789999999999997532 2
Q ss_pred HHHHHHHHHhhhcC-CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 263 LNDFQELIQGFFQT-APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 263 ~~~~~~~~~~~~~~-~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++..+.+.+.+.. ..+++++||++|.|+++++++|.+.+
T Consensus 143 -~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 143 -DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp -HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred -HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 2223333333321 13589999999999999999998764
No 168
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.69 E-value=8.8e-17 Score=152.38 Aligned_cols=158 Identities=15% Similarity=0.212 Sum_probs=92.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCC--ccee---------------------------ccCCCCceEEEE--EEEeCC-
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRK--KLAL---------------------------TSKTPGKTQCIN--HFRIND- 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~--~~~~---------------------------~~~~~~~t~~~~--~~~~~~- 171 (308)
..++|+++|.+|+|||||+++|++.. .... .....|+|.+.. .+...+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 45699999999999999999998641 1000 011345555443 333333
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-------CChhHHHHHHHhccCCC-CEEEEe
Q 021764 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-------AKPIDLEYASWLGQNQI-PMTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~-------~~~~~~~l~~~~~~~~~-pvivV~ 243 (308)
.+.+|||||+. +| ..........+|++++|+|++++ ...+..+...++...+. |+++|+
T Consensus 85 ~~~iiDtpG~~----------~f---~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHR----------DF---VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp EEEECCCSSST----------TH---HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred EEEEEECCCcH----------HH---HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 79999999965 23 33334455667789999999985 33333444444444555 699999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHHHH
Q 021764 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDEIL 295 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~el~ 295 (308)
||+|+.+..... .......+++.+.+.... ...++++++||++|+|+.+++
T Consensus 152 NK~Dl~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 152 NKMDLTEPPYDE-KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp ECGGGSSSTTCH-HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EcccCCCccccH-HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 999998631000 001122233333333221 113789999999999997543
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.68 E-value=2.8e-18 Score=168.25 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------e------eccCCCCceEEEEEEE--eC-
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-----------------------A------LTSKTPGKTQCINHFR--IN- 170 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------~------~~~~~~~~t~~~~~~~--~~- 170 (308)
...++|+++|.+|+|||||+++|++.... . .....+|+|.+..... .+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 34568999999999999999999752100 0 0011346666543322 23
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-------ChhHHHHHHHhccCCCC-EEEE
Q 021764 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-------KPIDLEYASWLGQNQIP-MTLV 242 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~-------~~~~~~l~~~~~~~~~p-vivV 242 (308)
..+.+|||||+..... .+ ......+|++++|+|++.+. ..+..+...++...++| +|+|
T Consensus 255 ~~i~iiDTPGh~~f~~----------~~---~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvv 321 (592)
T 3mca_A 255 KIYEIGDAPGHRDFIS----------GM---IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVS 321 (592)
T ss_dssp ----CCEEESSSEEEE----------EC---CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEE
T ss_pred eEEEEEECCChHHHHH----------HH---HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEE
Confidence 3799999999753110 11 12223456689999998643 44445555566666776 9999
Q ss_pred eecCCCCCcccCCCCCchhhHHHHHHHHHhhh----c---CCCCEEEeecCCCCCHH--------------HHHHHHHH
Q 021764 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQGFF----Q---TAPPWIMTSSVTNQGRD--------------EILLHMAQ 300 (308)
Q Consensus 243 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~vSA~~g~gi~--------------el~~~i~~ 300 (308)
+||+|+.+.. .+..+.+.+.+...+ + ..++++++||++|.|++ +|++.|.+
T Consensus 322 iNKiDl~~~~-------~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~ 393 (592)
T 3mca_A 322 VNKLDLMSWS-------EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ 393 (592)
T ss_dssp EECGGGGTTC-------HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred Eecccccccc-------HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence 9999997521 223333444443333 1 12579999999999998 67777654
No 170
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.68 E-value=8.6e-17 Score=160.16 Aligned_cols=167 Identities=22% Similarity=0.240 Sum_probs=112.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCccee----ccCCC----------------------------------------
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLAL----TSKTP---------------------------------------- 158 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~----~~~~~---------------------------------------- 158 (308)
-..|+|+++|.+|+|||||+|+|++..+.+. ++..|
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3567999999999999999999999764221 11110
Q ss_pred -----CceEEEEEEE--e--CCCEEEecCCCcccCCC---chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH
Q 021764 159 -----GKTQCINHFR--I--NDSWYLVDLPGYGYAAA---PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226 (308)
Q Consensus 159 -----~~t~~~~~~~--~--~~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~ 226 (308)
+.+.....+. . ..+++++||||+..... ..++...+..+...|+. ...|++++|+|++.+....+.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhHH
Confidence 0010111111 1 12689999999986321 22333456677777776 455779999999987776665
Q ss_pred -HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc---CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021764 227 -EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ---TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 227 -~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.+..++...++|+++|+||+|+.+... . ...+.. ..... .+.+++++||++|.|+++|++.+.+.
T Consensus 207 l~ll~~L~~~g~pvIlVlNKiDlv~~~~-----~---~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 207 LKIAKEVDPQGQRTIGVITKLDLMDEGT-----D---ARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHHCTTCSSEEEEEECTTSSCTTC-----C---SHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCcccCCcch-----h---hHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 678888888999999999999986432 1 111111 11111 12467889999999999999999874
No 171
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.68 E-value=3.3e-16 Score=144.57 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=94.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCCCceEEEE-----------------E---------------
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTPGKTQCIN-----------------H--------------- 166 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~~~t~~~~-----------------~--------------- 166 (308)
..+.|+++|.+|||||||+++|... ..+......|+.+.... .
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 4568999999999999999999742 12222222222111000 0
Q ss_pred ---------EEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC
Q 021764 167 ---------FRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ 236 (308)
Q Consensus 167 ---------~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~ 236 (308)
+... ..++++||||+.. .... ....+|++++|+|+......... ...+ .+
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~-------------~~~~---~~~~aD~vl~V~d~~~~~~~~~l--~~~~--~~ 217 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQ-------------SEVA---VANMVDTFVLLTLARTGDQLQGI--KKGV--LE 217 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSS-------------HHHH---HHTTCSEEEEEEESSTTCTTTTC--CTTS--GG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCc-------------HHHH---HHHhCCEEEEEECCCCCccHHHH--HHhH--hh
Confidence 0112 3799999999753 0111 12456779999998765433221 1111 24
Q ss_pred CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 237 ~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+|+++|+||+|+..... .....+++.+.+.... .+..+++++||++|+|+++++++|.+.+..
T Consensus 218 ~p~ivVlNK~Dl~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 218 LADIVVVNKADGEHHKE-----ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GCSEEEEECCCGGGHHH-----HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhH-----HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 69999999999875322 1222333333332211 224789999999999999999999988765
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.67 E-value=2e-17 Score=157.69 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=95.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC--cc---------------------eec------cCCCCceEEEE--EEEeCC-C
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRK--KL---------------------ALT------SKTPGKTQCIN--HFRIND-S 172 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~--~~---------------------~~~------~~~~~~t~~~~--~~~~~~-~ 172 (308)
.++|+++|.+|+|||||+++|++.. .. +.+ ....|.|.+.. .+..++ +
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4699999999999999999998641 00 000 01245554432 333333 7
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCCh-------hHHHHHHHhccCCCC-EEEEee
Q 021764 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP-------IDLEYASWLGQNQIP-MTLVFT 244 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~-------~~~~l~~~~~~~~~p-vivV~N 244 (308)
+.+|||||+. + +.+........+|++++|+|++++... +..+...++...++| +++|+|
T Consensus 87 ~~iiDtPGh~----------~---f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 87 VTVIDAPGHR----------D---FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEECCCCT----------T---HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEECCCcH----------H---HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence 9999999964 2 344444556677889999999865322 333444444456776 999999
Q ss_pred cCCCCCcccCCCCCchhhHHHHHHHHHhhhc--CCCCEEEeecCCCCCHHHH
Q 021764 245 KCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 245 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vSA~~g~gi~el 294 (308)
|+|+.+..+. ...+..+++.+.+....- ...+++++||++|+|++++
T Consensus 154 K~Dl~~~~~~---~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 154 KMDSVKWDES---RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CGGGGTTCHH---HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccccCCHH---HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9999842110 011122233333322210 1378999999999999754
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.67 E-value=2.3e-16 Score=161.68 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=103.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCC-------ccee-------ccCCCCceEEEEEEEe--C-CCEEEecCCCcccCC
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRK-------KLAL-------TSKTPGKTQCINHFRI--N-DSWYLVDLPGYGYAA 185 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~-------~~~~-------~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~ 185 (308)
....+|+++|.+|+|||||+++|++.. +... .....|.|.....+.+ + ..+.+|||||+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe--- 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA--- 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH---
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH---
Confidence 445799999999999999999998731 0000 1123455554332233 2 379999999954
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHH
Q 021764 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
+ +..........+|++++|+|++++...+..+....+...++| +|+|+||+|+.+..+ ..+...+
T Consensus 371 -------d---F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e----~le~i~e 436 (1289)
T 3avx_A 371 -------D---YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEE----LLELVEM 436 (1289)
T ss_dssp -------H---HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHH----HHHHHHH
T ss_pred -------H---HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchh----hHHHHHH
Confidence 2 444555566677889999999988776666655666566888 789999999985221 0111122
Q ss_pred HHHHHHHhhh--cCCCCEEEeecCCC--------CCHHHHHHHHHHH
Q 021764 265 DFQELIQGFF--QTAPPWIMTSSVTN--------QGRDEILLHMAQL 301 (308)
Q Consensus 265 ~~~~~~~~~~--~~~~~~~~vSA~~g--------~gi~el~~~i~~~ 301 (308)
++.+.+.... ....+++++||++| .|+++++++|.+.
T Consensus 437 Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 437 EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 3333333221 12479999999999 4688888888764
No 174
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.2e-16 Score=144.99 Aligned_cols=121 Identities=23% Similarity=0.290 Sum_probs=83.9
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCC-CchhhhhchH
Q 021764 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAA-APRELRTDWD 195 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~-~~~~~~~~~~ 195 (308)
..+.|..+|+|||.||||||||+|+|++.+ +.+.+.|++|.+. ..+.+.+ ++.++||||+.... .+.+
T Consensus 67 v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~------ 138 (376)
T 4a9a_A 67 VARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG------ 138 (376)
T ss_dssp BCBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----C------
T ss_pred EeecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhH------
Confidence 346778899999999999999999999975 5678889988864 4556666 89999999998642 2233
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHH---HHHHHh-ccCCCCEEEEeecCCCC
Q 021764 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDL---EYASWL-GQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~---~l~~~~-~~~~~pvivV~NK~Dl~ 249 (308)
+...++.....+|++++|+|++++....+. ++..+- ....+|.++++||+|..
T Consensus 139 -~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 139 -RGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp -HHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred -HHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 223333444456779999999876433221 222221 12567888899999864
No 175
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.65 E-value=1.2e-16 Score=152.75 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=87.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC--cc---------------------eeccC------CCCceEEEE--EEEeCC-C
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRK--KL---------------------ALTSK------TPGKTQCIN--HFRIND-S 172 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~--~~---------------------~~~~~------~~~~t~~~~--~~~~~~-~ 172 (308)
.++|+++|.+|+|||||+++|+... .. +...+ ..|.|.... .+..++ .
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 4699999999999999999997521 10 01111 234554432 344444 7
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhHHHHHHHhccCCCC-EEEEee
Q 021764 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PIDLEYASWLGQNQIP-MTLVFT 244 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~-------~~~~~l~~~~~~~~~p-vivV~N 244 (308)
+.+|||||+.+ +.+........+|++++|+|++++.. .+..+....+...++| +++|+|
T Consensus 123 ~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN 189 (467)
T 1r5b_A 123 FSLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 189 (467)
T ss_dssp EEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred EEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence 99999999642 33333444566778999999997631 2233334444556787 999999
Q ss_pred cCCCCCcccCCCCCchhhHHHHHHHHHhhhc----CCCCEEEeecCCCCCHHHHH
Q 021764 245 KCDKRKKKKNGGKRPEENLNDFQELIQGFFQ----TAPPWIMTSSVTNQGRDEIL 295 (308)
Q Consensus 245 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vSA~~g~gi~el~ 295 (308)
|+|+....... .......+++.+.+....+ ...+++++||++|.|+++++
T Consensus 190 K~Dl~~~~~~~-~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 190 KMDEPSVQWSE-ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CTTSTTCSSCH-HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccCCCccccH-HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99996421000 0011122233333332201 13679999999999998755
No 176
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=6.1e-17 Score=151.44 Aligned_cols=87 Identities=21% Similarity=0.198 Sum_probs=45.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--E--EE-------------------eC----CCEEEecC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--H--FR-------------------IN----DSWYLVDL 178 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~--~~-------------------~~----~~~~liDt 178 (308)
++|+++|.||||||||+|+|++.+ ..++..|++|.... . +. ++ .++.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 379999999999999999999975 45667777765421 1 11 11 25889999
Q ss_pred CCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC
Q 021764 179 PGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP 220 (308)
Q Consensus 179 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~ 220 (308)
||+..... ....+...++.....+|++++|+|++..
T Consensus 79 pG~~~~a~------~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAH------EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchh------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99864221 1112334444555677889999999875
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.65 E-value=3.9e-16 Score=144.35 Aligned_cols=164 Identities=22% Similarity=0.288 Sum_probs=100.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC----CCC----------------------------------------
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK----TPG---------------------------------------- 159 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~----~~~---------------------------------------- 159 (308)
..+.|+|+|.+|||||||+|+|++..+.+.... .|.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999764221111 000
Q ss_pred --------ceEEEEEEEe----CCCEEEecCCCcccCCC---chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC--C
Q 021764 160 --------KTQCINHFRI----NDSWYLVDLPGYGYAAA---PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA--K 222 (308)
Q Consensus 160 --------~t~~~~~~~~----~~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~--~ 222 (308)
.......+.+ ...+.+|||||+..... .......+..+...|+...+. +++++|+.... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~---iilvv~~~~~~~~~ 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNC---IILAISPANQDLAT 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSE---EEEEEEETTSCGGG
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCe---EEEEeecccCCcCC
Confidence 0000001111 12689999999876321 223334556677777765543 77788765432 2
Q ss_pred hhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHH
Q 021764 223 PIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 223 ~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.....+...+...++|+++|+||+|+.+.... . .+.+.. .......+|+++|++++.++++.+.++..
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~----~---~~~~~~---~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTD----A---VEILEG---RSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC----S---HHHHTT---SSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCccc----H---HHHHcC---ccccccCCeEEEEECChHHhccCCCHHHH
Confidence 23345666666678999999999999864321 1 111111 11223478999999999888876655443
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.65 E-value=1.6e-15 Score=146.75 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=77.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc-ce-------------ecc------CCCCceEE--EEEEEeCC-CEEEecCCCc
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKK-LA-------------LTS------KTPGKTQC--INHFRIND-SWYLVDLPGY 181 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~-~~-------------~~~------~~~~~t~~--~~~~~~~~-~~~liDtpG~ 181 (308)
..+|+++|.+|+|||||+++|+.... +. .+. ...|.|.. ...+.+++ .+.+|||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 46999999999999999999996321 10 000 12233322 22344444 7999999997
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021764 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.+ |...+..++ ..+|++++|+|++.+...+..++..++...++|+++|+||+|+...
T Consensus 93 ~d----------f~~~~~~~l---~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 93 ED----------FSEDTYRTL---TAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TT----------CCHHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred hh----------HHHHHHHHH---HHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 42 222333444 3456699999999988777777777777789999999999999754
No 179
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=144.62 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=88.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCCC-------------------------------------ce
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTPG-------------------------------------KT 161 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~~-------------------------------------~t 161 (308)
..+.|+|+|.||||||||+|+|++. ..+......|+ ++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3568999999999999999999962 11122222221 11
Q ss_pred EEE----EEEEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC
Q 021764 162 QCI----NHFRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ 236 (308)
Q Consensus 162 ~~~----~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~ 236 (308)
... ..+... ..++++||||+... + . .. ...+|++++|+|++.+..... +...+ ..
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~----~-------~--~l---~~~~d~vl~V~d~~~~~~~~~--i~~~i--l~ 212 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS----E-------F--AV---ADMVDMFVLLLPPAGGDELQG--IKRGI--IE 212 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C----H-------H--HH---HTTCSEEEEEECCC----------------CC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh----h-------h--hH---HhhCCEEEEEEcCCcchhHHH--hHHHH--Hh
Confidence 100 000112 37899999997521 0 0 11 234577999999986543221 11111 25
Q ss_pred CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 237 ~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.|.++|+||+|+.+... .......+...+.... .+..+++++||++|+|+++++++|.+.+..
T Consensus 213 ~~~ivVlNK~Dl~~~~~-----~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 213 MADLVAVTKSDGDLIVP-----ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp SCSEEEECCCSGGGHHH-----HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeeecCCCchh-----HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 78999999999874211 1112333333332111 123678999999999999999999987654
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.63 E-value=1.3e-15 Score=135.21 Aligned_cols=124 Identities=14% Similarity=0.093 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|+|||||+|+|++..+ ..++..+++|.... .+..++ .+.+|||||+.+...... .+...+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~---~~~~~i~~ 113 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND---MALNIIKS 113 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchH---HHHHHHHH
Confidence 357999999999999999999998754 34556666665432 233344 799999999865322111 12222333
Q ss_pred HHHhcCCccEEEEEEeCCC-CCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcc
Q 021764 201 YFLNRSTLVSVFLLIDASI-PAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~-~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~ 252 (308)
|+ ....++++++|+|.+. .....+.++...+.. ..+|+++|+||+|+....
T Consensus 114 ~~-~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FL-LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HT-TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred Hh-hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 32 2345678999988764 334444444444432 126999999999997543
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.62 E-value=4.7e-15 Score=147.94 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCC--cc--e------eccC------CCCceEE--EEEEEeCC-CEEEecCCCcc
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRK--KL--A------LTSK------TPGKTQC--INHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~--~~--~------~~~~------~~~~t~~--~~~~~~~~-~~~liDtpG~~ 182 (308)
.....+|+|+|.+|+|||||+|+|+... .. . .+.+ .+++|.. ...+.+++ .+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 3456799999999999999999999521 10 0 0111 2233332 22344444 79999999975
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021764 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+ |...+..++.. +|++++|+|++.+.......+...+...++|+++|+||+|+...
T Consensus 87 d----------f~~~~~~~l~~---aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 D----------FTVEVERSLRV---LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp S----------CCHHHHHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred c----------hHHHHHHHHHH---CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 3 22244455554 45699999999988887777677777789999999999999764
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.62 E-value=3.6e-15 Score=148.68 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc-c---ee------ccC------CCCceEE--EEEEEeCC-CEEEecCCCccc
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK-L---AL------TSK------TPGKTQC--INHFRIND-SWYLVDLPGYGY 183 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~-~---~~------~~~------~~~~t~~--~~~~~~~~-~~~liDtpG~~~ 183 (308)
...++|+|+|.+|+|||||+++|+.... . .. +.+ ..+.|.. ...+.+++ .+.+|||||+.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~- 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV- 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST-
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc-
Confidence 3457999999999999999999984210 0 00 000 2233332 23344444 79999999974
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021764 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.|...+..++..+ |++++|+|++.+...........+...++|+++|+||+|+...
T Consensus 89 ---------df~~~~~~~l~~a---D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 ---------DFTIEVERSMRVL---DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ---------TCHHHHHHHHHHC---SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred ---------chHHHHHHHHHHC---CEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 2334555555544 4599999999988887776666677789999999999999754
No 183
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.62 E-value=3.9e-15 Score=131.65 Aligned_cols=123 Identities=17% Similarity=0.149 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+|+|++.+. ..+...+++|... ..+.+++ .+.+|||||+.+.....+ .+...+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~---~~~~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQV-VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNH---QALELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCC-SCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchH---HHHHHHHH
Confidence 346999999999999999999999764 3456666665532 3344455 799999999865332221 22223334
Q ss_pred HHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhcc-----CCCCEEEEeecCCCCCc
Q 021764 201 YFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~-~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~ 251 (308)
++ ....++++++|+|.+.. ....+..+..++.. ..+|+++|+||+|+...
T Consensus 111 ~l-~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 111 FL-VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HT-TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HH-hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 33 33456789999887653 33344344444432 13599999999999643
No 184
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.60 E-value=1.5e-14 Score=143.77 Aligned_cols=113 Identities=21% Similarity=0.263 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc----ee------ccC------CCCceEE--EEEEEeCC-CEEEecCCCcccC
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL----AL------TSK------TPGKTQC--INHFRIND-SWYLVDLPGYGYA 184 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~----~~------~~~------~~~~t~~--~~~~~~~~-~~~liDtpG~~~~ 184 (308)
...+|+|+|.+|+|||||+++|++.... .. ... ..+.+.. ...+.... .+.+|||||..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~-- 85 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG-- 85 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG--
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc--
Confidence 3458999999999999999999953211 00 000 1123322 22333333 78999999964
Q ss_pred CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021764 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
.|...+..++..+ +++++|+|++.+......++...+...++|+++|+||+|+.
T Consensus 86 --------~f~~~~~~~l~~a---d~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 --------DFVGEIRGALEAA---DAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp --------GGHHHHHHHHHHC---SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred --------chHHHHHHHHhhc---CcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 3444555565554 45899999998888777777777777899999999999987
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.59 E-value=2.5e-14 Score=142.84 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc-ce---------eccC------CCCceEEE--EEEEeC--------CCEEEe
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK-LA---------LTSK------TPGKTQCI--NHFRIN--------DSWYLV 176 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~-~~---------~~~~------~~~~t~~~--~~~~~~--------~~~~li 176 (308)
...++|+|+|..|+|||||+++|+.... .. ...+ ..+.|... ..+.++ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 4567999999999999999999975310 00 0111 23444432 223332 368999
Q ss_pred cCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021764 177 DLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 177 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
||||.. .|...+..+++. +|++++|+|++.+...+...+...+...++|+++|+||+|+...
T Consensus 88 DTPG~~----------df~~~~~~~l~~---aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHV----------DFTIEVERSMRV---LDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCcc----------chHHHHHHHHHH---CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 999975 233344555544 45699999999887776666666666678999999999998754
No 186
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.3e-15 Score=125.06 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++..+.. ..+..++++... ....+.+|||||..... ..+..|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~----------~~~~~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLR----------YKLSDY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSS----------CCHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHH----------HHHHHH
Confidence 456799999999999999999999976422 112233332211 23378999999975321 122333
Q ss_pred HHh-cCCccEEEEEEeCC-CCCChhHH--HHHHHhc------cCCCCEEEEeecCCCCCcc
Q 021764 202 FLN-RSTLVSVFLLIDAS-IPAKPIDL--EYASWLG------QNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 202 ~~~-~~~~~~vl~ViD~~-~~~~~~~~--~l~~~~~------~~~~pvivV~NK~Dl~~~~ 252 (308)
+.. ...++++++|+|++ +..+.... .+..++. ..+.|+++|+||+|+....
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 322 23356699999998 43322221 1222221 2489999999999998654
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.58 E-value=7.1e-15 Score=132.63 Aligned_cols=170 Identities=21% Similarity=0.227 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-CcceeccC------CCCceEEEEEEEe--CC---CEEEecCCCcccCCCc----
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRR-KKLALTSK------TPGKTQCINHFRI--ND---SWYLVDLPGYGYAAAP---- 187 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~-~~~~~~~~------~~~~t~~~~~~~~--~~---~~~liDtpG~~~~~~~---- 187 (308)
-.++|+|+|++|||||||+++|++. .+...... .++.......+.. ++ .+.+|||+|+......
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3469999999999999999999875 22111000 1111111111111 12 5899999998532111
Q ss_pred hhhhhchHHHHHHHHHhcCC----------ccEEEEEEeCCC-CCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCC
Q 021764 188 RELRTDWDKFTKDYFLNRST----------LVSVFLLIDASI-PAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGG 256 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~----------~~~vl~ViD~~~-~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~ 256 (308)
..+...+......|+....+ +++++|+++++. +....+.++...+. ...++++|+||+|+....+
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e--- 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKE--- 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHH---
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHH---
Confidence 11111111112255544332 234667776654 36555555555543 3679999999999975321
Q ss_pred CCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021764 257 KRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.....++..+.+... .++++++||+++ |++++|.++.+.+.
T Consensus 173 --~~~~~~~~~~~~~~~---~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 173 --RERLKKRILDEIEEH---NIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp --HHHHHHHHHHHHHHT---TCCCCCCC----------CHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHc---CCeEEecCCccc-cccHHHHHHHHHhh
Confidence 111112223333322 478999999999 99999999887764
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.56 E-value=1.7e-14 Score=140.16 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=82.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc-c-------------eeccC------CCCceE--EEEEEEeCC-CEEEecCCCc
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKK-L-------------ALTSK------TPGKTQ--CINHFRIND-SWYLVDLPGY 181 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~-~-------------~~~~~------~~~~t~--~~~~~~~~~-~~~liDtpG~ 181 (308)
..+|+|+|..++|||||..+|+.... + ..+.+ ..|.|. ....+.+++ .+.++||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 45899999999999999999973210 0 00111 113332 134556666 8999999998
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021764 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
.+ |..+..+....+|.+++|+|+..+...+...+.+.+...++|.++++||+|....+
T Consensus 111 vD-------------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 111 QD-------------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH 168 (548)
T ss_dssp GG-------------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC
T ss_pred HH-------------HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc
Confidence 64 33344455556777999999999999988888888888999999999999987543
No 189
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.56 E-value=9.5e-15 Score=134.08 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=90.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCCCceEE---------------------EEE------------
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTPGKTQC---------------------INH------------ 166 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~~~t~~---------------------~~~------------ 166 (308)
...|+++|.+|+|||||++.|.+. .....+...++++.. +..
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~ 135 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ 135 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHH
Confidence 458999999999999999999742 122333333322210 000
Q ss_pred --------EEe-CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC
Q 021764 167 --------FRI-NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI 237 (308)
Q Consensus 167 --------~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~ 237 (308)
+.. +..+.++||||+... .... ...+|++++|+|++.+....... .. ..++
T Consensus 136 ~~~~~~~~~~~~~~~i~liDTpG~~~~-------------~~~~---~~~aD~vl~Vvd~~~~~~~~~l~--~~--~~~~ 195 (341)
T 2p67_A 136 RARELMLLCEAAGYDVVIVETVGVGQS-------------ETEV---ARMVDCFISLQIAGGGDDLQGIK--KG--LMEV 195 (341)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEECCTTH-------------HHHH---HTTCSEEEEEECC------CCCC--HH--HHHH
T ss_pred HHHHHHHHhhccCCCEEEEeCCCccch-------------HHHH---HHhCCEEEEEEeCCccHHHHHHH--Hh--hhcc
Confidence 002 237999999997531 1111 24567799999997543211110 00 1247
Q ss_pred CEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc----CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 238 PMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ----TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 238 pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
|.++|+||+|+..... .....+++.+.+..... +..+++++||++|+|+++++++|.+.+..
T Consensus 196 p~ivv~NK~Dl~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 196 ADLIVINKDDGDNHTN-----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp CSEEEECCCCTTCHHH-----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred cCEEEEECCCCCChHH-----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 8999999999975321 11122233333322110 13678999999999999999999987653
No 190
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.55 E-value=2.1e-14 Score=126.28 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=96.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHh-----cCCcceeccCCCCceE-------------EEE---------------------
Q 021764 125 LPEFALVGRSNVGKSSLLNSLV-----RRKKLALTSKTPGKTQ-------------CIN--------------------- 165 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~-----~~~~~~~~~~~~~~t~-------------~~~--------------------- 165 (308)
...++++|.+|||||||++.|. +. ....+...++.+. ...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 4578999999999999999998 43 2333333332100 000
Q ss_pred -----------EEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHH-H----H
Q 021764 166 -----------HFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE-Y----A 229 (308)
Q Consensus 166 -----------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~-l----~ 229 (308)
.+..+..+++|||||...... +..+.......... +++++++|+.......+.. . .
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~-------~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~ 164 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFL-------FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL 164 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH-------HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhh-------hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH
Confidence 000012799999999743110 00011111122234 6799999987655544321 1 1
Q ss_pred HHhccCCCCEEEEeecCCCCCcccCCCCCchh---hHHHHHHHH-----------------HhhhcCCCCEEEeecCCCC
Q 021764 230 SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEE---NLNDFQELI-----------------QGFFQTAPPWIMTSSVTNQ 289 (308)
Q Consensus 230 ~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~-----------------~~~~~~~~~~~~vSA~~g~ 289 (308)
......++|+++|+||+|+....+.. ...+ ..+.+.+.+ ...+....+++++||++|+
T Consensus 165 ~~~~~~~~p~~iv~NK~D~~~~~~~~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~ 242 (262)
T 1yrb_A 165 LIDLRLGATTIPALNKVDLLSEEEKE--RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE 242 (262)
T ss_dssp HHHHHHTSCEEEEECCGGGCCHHHHH--HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT
T ss_pred HHhcccCCCeEEEEecccccccccHH--HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc
Confidence 12223478999999999987542100 0001 111111111 0122233589999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 021764 290 GRDEILLHMAQLRNYW 305 (308)
Q Consensus 290 gi~el~~~i~~~~~~~ 305 (308)
|+++++++|.+.+...
T Consensus 243 gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 243 GFEDLETLAYEHYCTC 258 (262)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc
Confidence 9999999999988654
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.55 E-value=3.5e-15 Score=127.86 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCC----cceeccCCCCceEE----------EEEE------------------Ee-C
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRK----KLALTSKTPGKTQC----------INHF------------------RI-N 170 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~----~~~~~~~~~~~t~~----------~~~~------------------~~-~ 170 (308)
..++|+++|.+|||||||+++|++.. ..+.+...++.+.+ ...+ .. +
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45699999999999999999998741 12333333332110 0000 01 1
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021764 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
..+.+|||+|..... .++. . ..+.+++|+|+..+..... .+....++|+++|+||+|+.+
T Consensus 109 ~d~iiidt~G~~~~~--------------~~~~-~-~~~~~i~vvd~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLICP--------------VDFD-L-GENYRVVMVSVTEGDDVVE----KHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSSGG--------------GGCC-C-SCSEEEEEEEGGGCTTHHH----HCHHHHHTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCCCC--------------chhc-c-ccCcEEEEEeCCCcchhhh----hhhhhhhcCCEEEEecccCCc
Confidence 257788888842100 0110 1 1245899999987643221 112223589999999999864
Q ss_pred cccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021764 251 KKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
... ...+++.+.+... ....+++++||++|+|+++++++|.+.+..+.
T Consensus 169 ~~~-------~~~~~~~~~~~~~-~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 169 AVG-------ADVEKMKADAKLI-NPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHT-------CCHHHHHHHHHHH-CTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred chh-------hHHHHHHHHHHHh-CCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 321 1133444444332 23478999999999999999999998876554
No 192
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.54 E-value=6.5e-14 Score=136.15 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=84.5
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEE--------------------------------
Q 021764 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHF-------------------------------- 167 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~-------------------------------- 167 (308)
...+.++|+|+|.+|||||||+|+|++.+... .++..|++++.....
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 34567899999999999999999999976421 355555554321110
Q ss_pred ------EeC----CCEEEecCCCcccCCC-chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhccC
Q 021764 168 ------RIN----DSWYLVDLPGYGYAAA-PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLGQN 235 (308)
Q Consensus 168 ------~~~----~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~-~~~~~~~l~~~~~~~ 235 (308)
.+. .++.+|||||+..... .......|......++..+ |++++|+|++.. .......+...+...
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~a---D~il~VvDa~~~~~~~~~~~~l~~l~~~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERV---DLIILLFDAHKLEISDEFSEAIGALRGH 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHC---SEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhC---CEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence 011 2589999999875211 1110112445666665544 559999999874 555556666777767
Q ss_pred CCCEEEEeecCCCCCc
Q 021764 236 QIPMTLVFTKCDKRKK 251 (308)
Q Consensus 236 ~~pvivV~NK~Dl~~~ 251 (308)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 7899999999999853
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=2.9e-14 Score=133.82 Aligned_cols=165 Identities=18% Similarity=0.264 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC------CCCceEEEEEE--EeCC---CEEEecCCCcccCCCchhhhh
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK------TPGKTQCINHF--RIND---SWYLVDLPGYGYAAAPRELRT 192 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~------~~~~t~~~~~~--~~~~---~~~liDtpG~~~~~~~~~~~~ 192 (308)
-.++|+|+|++|||||||+|+|++..+...... .+........+ ...+ .+.+|||+|+........
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~--- 106 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN--- 106 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-------------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh---
Confidence 346899999999999999999999754211100 11111111111 1112 588999999865321111
Q ss_pred chHHH-------HHHHHHh----------cCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccC
Q 021764 193 DWDKF-------TKDYFLN----------RSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKN 254 (308)
Q Consensus 193 ~~~~~-------~~~~~~~----------~~~~~~vl~ViD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~ 254 (308)
.|..+ ...|+.. ...+++|+|+++++ .+....+.++...+.. ++|+|+|+||+|+....+
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~e- 184 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEE- 184 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHH-
Confidence 11111 2223211 12234577777776 5677777666666654 899999999999975332
Q ss_pred CCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHH
Q 021764 255 GGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.....+.+.+.+... +++++++||+++.++++++..+.+
T Consensus 185 ----v~~~k~~i~~~~~~~---~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 185 ----CQQFKKQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp ----HHHHHHHHHHHHHHH---TCCCCCCC----------------
T ss_pred ----HHHHHHHHHHHHHHc---CCeEEeCCCCCCcCHHHHHHHHHh
Confidence 111112333333322 478999999999999988877665
No 194
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.47 E-value=2.4e-15 Score=139.34 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=81.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-----cceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCc-hhhhhchHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRK-----KLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP-RELRTDWDKFTK 199 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~ 199 (308)
.+|+++|.+|||||||+|+|++.. ....++..||+|.....+.++..+.++||||+.+...- ..+. ...+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVG---KQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSC---HHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhh---HHHHH
Confidence 489999999999999999999852 23457889999998888888778999999999764321 1111 12333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc
Q 021764 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK 253 (308)
Q Consensus 200 ~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~ 253 (308)
.++ .....+.++|++|+.............++...+.|+++++||+|..+..+
T Consensus 238 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 238 LIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEE
T ss_pred Hhc-cccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccccc
Confidence 332 23455668999998532111122223445556789999999999986543
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.46 E-value=4.1e-14 Score=121.55 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=44.3
Q ss_pred CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021764 236 QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 236 ~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..|.++|+||+|+.+... ...+++.+.+... ....+++++||++|+|++++|++|.+.+..+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG-------ADIKKMENDAKRI-NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp TTCSEEEEECGGGHHHHT-------CCHHHHHHHHHHH-CTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hcCCEEEEeccccCchhH-------HHHHHHHHHHHHh-CCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 478899999999875321 1133333333322 2347899999999999999999999887654
No 196
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.46 E-value=4.5e-15 Score=137.59 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=86.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC----CcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCC-chhhhhchHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR----KKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA-PRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~ 200 (308)
.+|+++|.+|+|||||+|+|++. .....++..||+|.....+.++..+.++||||+..... ...+..+ .+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~---~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDAR---DLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTT---THHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHH---HHHH
Confidence 47999999999999999999985 12356788999999888888888899999999976432 2222211 3333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK 253 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~ 253 (308)
++ .....+.++|++|+.............++...+.|+++++||+|..+..+
T Consensus 240 ~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~ 291 (369)
T 3ec1_A 240 IT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTK 291 (369)
T ss_dssp HS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEE
T ss_pred Hh-cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccccc
Confidence 32 23445679999998532111121123445556789999999999986543
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.45 E-value=7.3e-14 Score=138.16 Aligned_cols=115 Identities=21% Similarity=0.280 Sum_probs=84.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc-c---e------eccCCC------CceEE--EEEEEeCC-CEEEecCCCcccCC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKK-L---A------LTSKTP------GKTQC--INHFRIND-SWYLVDLPGYGYAA 185 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~-~---~------~~~~~~------~~t~~--~~~~~~~~-~~~liDtpG~~~~~ 185 (308)
+.+|+|+|+.++|||||..+|+.... + . .+.+.- |.|.. ...+.+++ .+.++||||+.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D-- 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD-- 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH--
Confidence 46899999999999999999974210 0 0 011111 33322 22344444 799999999864
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021764 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
|..+..+....+|++++|+|+..+...+...+.+.+...++|.++++||+|....+
T Consensus 80 -----------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 80 -----------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGID 135 (638)
T ss_dssp -----------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCC
T ss_pred -----------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCC
Confidence 55566667777888999999999998888888888888899999999999987543
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.43 E-value=8.4e-13 Score=121.43 Aligned_cols=85 Identities=21% Similarity=0.187 Sum_probs=53.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC------------------CCEEEecCCCcccCC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN------------------DSWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~------------------~~~~liDtpG~~~~~ 185 (308)
.+|+|+|.||||||||+|+|++.. ..+...|++|... ..+.+. ..+.+|||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 489999999999999999999975 3455556555432 123332 258999999987532
Q ss_pred -CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021764 186 -APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 186 -~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~ 219 (308)
.+..++.. ++. +++ .+|++++|+|+++
T Consensus 81 ~~~~gl~~~---fl~-~ir---~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNK---FLA-NIR---ETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCC---HHH-HHH---TCSEEEEEEECSC
T ss_pred cccchHHHH---HHH-HHH---hcCeEEEEEecCC
Confidence 12233322 222 233 4456999999985
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.43 E-value=3.8e-13 Score=124.29 Aligned_cols=85 Identities=25% Similarity=0.298 Sum_probs=53.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEe----------------------CCCEEEecCCCc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRI----------------------NDSWYLVDLPGY 181 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~----------------------~~~~~liDtpG~ 181 (308)
++|+++|.||||||||+|+|++.. +.+...|++|.. .....+ ...+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 589999999999999999999863 223334433321 111111 235899999999
Q ss_pred ccCC-CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021764 182 GYAA-APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 182 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~ 219 (308)
.... .+..++.. ++. +++ .+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~---fl~-~ir---~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQ---FLA-HIR---EVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHH---HHH-HHH---TCSEEEEEEECCC
T ss_pred cccccccchHHHH---HHH-HHH---hCCEEEEEEECCC
Confidence 7643 22232222 332 233 4456999999975
No 200
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=6.7e-13 Score=121.50 Aligned_cols=110 Identities=13% Similarity=0.168 Sum_probs=63.5
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021764 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
..++++||||+.... . . -...+|++++|+|+..+..... +...+ ...+.++|+||+|+..
T Consensus 148 ~~~iliDT~Gi~~~~-----------~--~---v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 148 FDVILVETVGVGQSE-----------T--A---VADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDGD 207 (337)
T ss_dssp CCEEEEEECSSSSCH-----------H--H---HHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTTC
T ss_pred CCEEEEECCCCCcch-----------h--h---HHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhccC
Confidence 389999999986411 0 0 1134577999999864322110 00011 1246688889999764
Q ss_pred cccCCCCCchhhHHHHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 251 KKKNGGKRPEENLNDFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
... ......+++...+.... .+..+++.+||+++.|+++|++.|.+.+..
T Consensus 208 ~~~----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~ 261 (337)
T 2qm8_A 208 GER----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK 261 (337)
T ss_dssp CHH----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred chh----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 211 01112233322221111 113689999999999999999999988763
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.39 E-value=4.9e-13 Score=135.99 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcce--------ecc------CCCCceEE--EEEEEe-----------------C
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLA--------LTS------KTPGKTQC--INHFRI-----------------N 170 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~--------~~~------~~~~~t~~--~~~~~~-----------------~ 170 (308)
..++|+|+|.+|+|||||+++|+...... ... ...|.|.. ...+.+ +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 34699999999999999999998742100 000 01222221 111122 1
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021764 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
..+.+|||||+.+ |...+..+++.+ |++++|+|++++.+.+...+..++...++|+++|+||+|+..
T Consensus 98 ~~i~liDTPG~~d----------f~~~~~~~l~~a---D~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVD----------FSSEVTAALRVT---DGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCS----------SCHHHHHHHHTC---SEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchh----------hHHHHHHHHHhC---CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 2689999999753 333455555544 458999999999888877665666667899999999999873
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.36 E-value=2.4e-12 Score=128.78 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=79.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcc----e------eccC------CCCceEE--EEEEEeC-------C-CEEE
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKL----A------LTSK------TPGKTQC--INHFRIN-------D-SWYL 175 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~----~------~~~~------~~~~t~~--~~~~~~~-------~-~~~l 175 (308)
-+.+.+|+|+|..++|||||..+|+..... . .+.+ ..|.|.. ...+.+. + .+.+
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 355679999999999999999999742100 0 0111 1233332 1233332 2 5899
Q ss_pred ecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021764 176 VDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 176 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+||||+.+ |..+..+....+|++++|+|+..+...+...+.+.+...++|.++++||+|....
T Consensus 90 IDTPGHvD-------------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 90 IDTPGHVD-------------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp ECCCSCTT-------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred EeCCCCcc-------------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 99999864 3334444455566799999999999998888888888889999999999998643
No 203
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.30 E-value=1.7e-11 Score=114.75 Aligned_cols=151 Identities=17% Similarity=0.311 Sum_probs=87.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce--eccCCCCceEEEEEEEeC--C---CEEEecCCCcccCCCchh--------
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA--LTSKTPGKTQCINHFRIN--D---SWYLVDLPGYGYAAAPRE-------- 189 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~--~~~~~~~~t~~~~~~~~~--~---~~~liDtpG~~~~~~~~~-------- 189 (308)
.++++|+|++|+|||||+|.|++..... .....++.+.....+... . .++++|++|++.......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 3579999999999999999999964211 112234444432222221 2 588999999875322111
Q ss_pred hhhchHHHHHHHHHhcC------C--cc-EEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCch
Q 021764 190 LRTDWDKFTKDYFLNRS------T--LV-SVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPE 260 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~------~--~~-~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~ 260 (308)
+...+..++..+..... . ++ ++++++|+..+.+..+.++.+++. .++|+|+|+||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~--------- 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISK--------- 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCH---------
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccch---------
Confidence 11122223322211110 1 12 477788888888888988888887 68999999999998853
Q ss_pred hhHHHHHHHHHh-hhcCCCCEEEeec
Q 021764 261 ENLNDFQELIQG-FFQTAPPWIMTSS 285 (308)
Q Consensus 261 ~~~~~~~~~~~~-~~~~~~~~~~vSA 285 (308)
..+..+.+.+.. .-..+++++++|.
T Consensus 192 ~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 192 SELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 335555555554 2223466666664
No 204
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.19 E-value=1.7e-11 Score=111.39 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=76.7
Q ss_pred EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC----------CCCChhHH--HHHHH
Q 021764 165 NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS----------IPAKPIDL--EYASW 231 (308)
Q Consensus 165 ~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~----------~~~~~~~~--~l~~~ 231 (308)
..+..++ .+.+|||+|.. .++..|.+||....+ +++|+|.+ +..+..+. .+...
T Consensus 160 ~~~~~~~v~l~iwDtgGQe----------~~R~~w~~yf~~~~~---iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 160 YPFDLQSVIFRMVDVGGQR----------SERRKWIHCFENVTS---IMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp EEEEETTEEEEEEEECCSH----------HHHTTGGGGCSSCSE---EEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred EEEEeeceeeEEEEcCCch----------hHHHHHHHHhCCCCE---EEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 3444555 78999999943 566678888876554 89999765 22111111 11222
Q ss_pred hc---cCCCCEEEEeecCCCCCcccCC-----------C-CCchhhHHHH-HHHHHhhh---cCCCCEEEeecCCCCCHH
Q 021764 232 LG---QNQIPMTLVFTKCDKRKKKKNG-----------G-KRPEENLNDF-QELIQGFF---QTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 232 ~~---~~~~pvivV~NK~Dl~~~~~~~-----------~-~~~~~~~~~~-~~~~~~~~---~~~~~~~~vSA~~g~gi~ 292 (308)
.. ..+.|+++++||+|+...+-.. . .+..+....+ .+.+.... ...+.++++||+++.||+
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 22 1579999999999987543100 0 1122223222 22222111 123567899999999999
Q ss_pred HHHHHHHHHHHH
Q 021764 293 EILLHMAQLRNY 304 (308)
Q Consensus 293 el~~~i~~~~~~ 304 (308)
++|..+.+.+-+
T Consensus 307 ~vF~~v~~~Il~ 318 (327)
T 3ohm_A 307 FVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 205
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.16 E-value=1.2e-10 Score=103.12 Aligned_cols=126 Identities=21% Similarity=0.405 Sum_probs=72.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceec------cCCCCce--EEEEE----EEeCCCEEEecCCCcccCCCchhhhhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALT------SKTPGKT--QCINH----FRINDSWYLVDLPGYGYAAAPRELRTD 193 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~------~~~~~~t--~~~~~----~~~~~~~~liDtpG~~~~~~~~~~~~~ 193 (308)
++++|+|++|+|||||+|.|++....... .+.+.+. ..+.. ......++++|++|+............
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 58999999999999999999984321100 0111111 11111 111225899999998753322111111
Q ss_pred hHHHH----HHHHHh-----------cCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021764 194 WDKFT----KDYFLN-----------RSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 194 ~~~~~----~~~~~~-----------~~~~~~vl~ViD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
...+. ..++.. ...++++++++|.. .+....+.++..++... +++++|+||+|.....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHH
Confidence 11111 111111 11235688888865 78888888888888766 9999999999988543
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.15 E-value=4.6e-11 Score=108.89 Aligned_cols=126 Identities=12% Similarity=0.110 Sum_probs=78.2
Q ss_pred EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC----------CCChhHH--HHHHHh
Q 021764 166 HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI----------PAKPIDL--EYASWL 232 (308)
Q Consensus 166 ~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~----------~~~~~~~--~l~~~~ 232 (308)
.+.+++ .+.+|||+|.. .++.+|.+||..+.+ +++|+|.++ ..+..+. .+...+
T Consensus 155 ~~~~~~v~l~iwDtaGQe----------~~R~~w~~yy~~a~~---iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~ 221 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQR----------SERKXWVSFFSDVDC---AIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIM 221 (340)
T ss_dssp EEESSSCEEEEEECCSCH----------HHHHHHHTTSCSCSE---EEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHH
T ss_pred EEEeeeeeeccccCCCcc----------cccccHHHHhccCCE---EEEEEECCccccccccccccchHHHHHHHHHHHh
Confidence 344444 78999999942 677889888876554 899999982 2222111 111222
Q ss_pred c---cCCCCEEEEeecCCCCCcccCCC--------CCchhhHHHHHHHHHhhh-----------c-------------CC
Q 021764 233 G---QNQIPMTLVFTKCDKRKKKKNGG--------KRPEENLNDFQELIQGFF-----------Q-------------TA 277 (308)
Q Consensus 233 ~---~~~~pvivV~NK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~~~~-----------~-------------~~ 277 (308)
. ..+.|+++++||+|+...+.... .......++..+.+...| . ..
T Consensus 222 ~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (340)
T 4fid_A 222 TNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEK 301 (340)
T ss_dssp HCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CE
T ss_pred hhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcc
Confidence 1 25789999999999875321000 000012334434443333 0 13
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+.++++||++..||+.+|..+.+.+-+
T Consensus 302 iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 668899999999999999999887644
No 207
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.12 E-value=2.5e-10 Score=101.82 Aligned_cols=60 Identities=30% Similarity=0.473 Sum_probs=41.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
..+|+++|.||||||||+|+|.+.+. ..++..||+|+....+..+..+.++||||+.+..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVGKELELLDTPGILWPK 179 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEETTTEEEEECCCCCCSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence 45899999999999999999998753 5688899999887777777799999999998654
No 208
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.11 E-value=1.7e-11 Score=110.39 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=83.7
Q ss_pred HHHHHHhcCCcc-eeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021764 140 SLLNSLVRRKKL-ALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 140 SLin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~ 218 (308)
+|+.+++.+.+. ..+.++.|.... ..+..++++.+||| .. +++.+++.|+..+ |++++|+|++
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qe----------r~~~l~~~~~~~a---d~vilV~D~~ 95 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LH----------RKNLLTKPHVANV---DQVILVVTVK 95 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CC----------CSCEETTTTEESC---CEEEEEECSS
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--cc----------ccceeeccccccC---CEEEEEEeCC
Confidence 577777766554 344555563332 22223447999999 21 2333555555544 5599999999
Q ss_pred CCC-ChhHHHHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021764 219 IPA-KPIDLEYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 219 ~~~-~~~~~~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
++. +... +..|+ ...++|+++|+||+|+.+... .+..+++.+.+.. . .+++++||++|.|++++
T Consensus 96 ~~~~s~~~--l~~~l~~~~~~~~piilv~NK~DL~~~~~------v~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~l 163 (301)
T 1u0l_A 96 MPETSTYI--IDKFLVLAEKNELETVMVINKMDLYDEDD------LRKVRELEEIYSG---L-YPIVKTSAKTGMGIEEL 163 (301)
T ss_dssp TTCCCHHH--HHHHHHHHHHTTCEEEEEECCGGGCCHHH------HHHHHHHHHHHTT---T-SCEEECCTTTCTTHHHH
T ss_pred CCCCCHHH--HHHHHHHHHHCCCCEEEEEeHHHcCCchh------HHHHHHHHHHHhh---h-CcEEEEECCCCcCHHHH
Confidence 876 3332 23343 346899999999999975321 1224444444432 1 68999999999999999
Q ss_pred HHHHH
Q 021764 295 LLHMA 299 (308)
Q Consensus 295 ~~~i~ 299 (308)
|.++.
T Consensus 164 f~~l~ 168 (301)
T 1u0l_A 164 KEYLK 168 (301)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 98764
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.09 E-value=1.3e-09 Score=101.91 Aligned_cols=168 Identities=18% Similarity=0.146 Sum_probs=94.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcce---eccCCCCceEEEEEEEeC--CCEEEecCCCcccCCCchhhhhchHHHHHH
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLA---LTSKTPGKTQCINHFRIN--DSWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~---~~~~~~~~t~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+|++|||||||+|.|++-.... .......+++....+... ..++++|+||+..... .....+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~------~~~~~L~~ 143 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNF------PPDTYLEK 143 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSC------CHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHH------HHHHHHHH
Confidence 379999999999999999999943211 111111111111112222 2689999999864211 22223333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc--CCCC-CchhhHH-HHHHHH----Hh
Q 021764 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK--NGGK-RPEENLN-DFQELI----QG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~--~~~~-~~~~~~~-~~~~~~----~~ 272 (308)
+ .....+..++ ++... ...++..+...+...++|+++|.||.|+.--++ ...+ ...+.+. .+.+.. .+
T Consensus 144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2 1122233343 77654 456667777887778899999999999752110 0000 1122222 222222 11
Q ss_pred hhcCCCCEEEeec--CCCCCHHHHHHHHHHHHH
Q 021764 273 FFQTAPPWIMTSS--VTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA--~~g~gi~el~~~i~~~~~ 303 (308)
.......+|.+|+ ..+.|++++.+.+.+.+.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 1012357899999 677789999999987653
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.07 E-value=1.4e-09 Score=101.03 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=57.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC------------------CEEEecCCCcccCC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND------------------SWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~------------------~~~liDtpG~~~~~ 185 (308)
.+|+|+|.+|||||||+|+|++... +.++..|++|.. ...+.+.+ .+.++|+||+....
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~-a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 4899999999999999999999652 356777776654 23344432 47899999987643
Q ss_pred Cc-hhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021764 186 AP-RELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 186 ~~-~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~ 219 (308)
.. ..++.. ++ .+ ...++.+++|+|+..
T Consensus 100 s~~e~L~~~---fl-~~---ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNA---FL-SH---VRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHH---HH-HH---HTTCSEEEEEEECCC
T ss_pred cHHHHHHHH---HH-HH---HHHHHHHHHHHhccc
Confidence 22 222222 22 22 234566999999864
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.06 E-value=1.7e-10 Score=107.20 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=43.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC------------------CCEEEecCCCcccCC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN------------------DSWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~------------------~~~~liDtpG~~~~~ 185 (308)
.+|+|+|.||||||||+|+|++.+. .++..|++|... ..+.+. ..+.+|||||+....
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 5899999999999999999999753 456666666532 223322 248999999997633
Q ss_pred C-chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC
Q 021764 186 A-PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP 220 (308)
Q Consensus 186 ~-~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~ 220 (308)
. +..++. .+..+++.+ |++++|+|+++.
T Consensus 101 s~~~glg~----~~l~~ir~a---D~Il~VvD~~~~ 129 (396)
T 2ohf_A 101 HNGQGLGN----AFLSHISAC---DGIFHLTRAFED 129 (396)
T ss_dssp ------CC----HHHHHHHTS---SSEEEEEEC---
T ss_pred chhhHHHH----HHHHHHHhc---CeEEEEEecCCC
Confidence 2 222222 222344444 448999999753
No 212
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.04 E-value=2e-10 Score=105.49 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=81.3
Q ss_pred eEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhH-HHHHHH
Q 021764 161 TQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PID-LEYASW 231 (308)
Q Consensus 161 t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~-------~~~-~~l~~~ 231 (308)
+.....+.+++ .+.+|||+|.. .++..|.+||..++ ++++|+|.++..+ ... .+...|
T Consensus 182 Gi~~~~~~~~~~~l~iwDt~GQe----------~~r~~w~~yf~~a~---~iIfV~dls~~d~~l~ed~~~nr~~e~~~~ 248 (353)
T 1cip_A 182 GIVETHFTFKDLHFKMFDVGGQR----------SERKKWIHCFEGVT---AIIFCVALSDYDLVLAEDEEMNRMHESMKL 248 (353)
T ss_dssp SEEEEEEEETTEEEEEEEECCSG----------GGGGGGGGGCTTCS---EEEEEEEGGGGGCEETTEEEEEHHHHHHHH
T ss_pred ceEEEEEeeCCeeEEEEeCCCch----------hhhHHHHHHHhcCC---EEEEEEECccccccccccchhhhHHHHHHH
Confidence 33444555555 79999999953 45557778776654 4999999987432 111 112222
Q ss_pred h----c---cCCCCEEEEeecCCCCCcccC-----------CCCCchhhHHHHHHH-HHhhh----cCCCCEEEeecCCC
Q 021764 232 L----G---QNQIPMTLVFTKCDKRKKKKN-----------GGKRPEENLNDFQEL-IQGFF----QTAPPWIMTSSVTN 288 (308)
Q Consensus 232 ~----~---~~~~pvivV~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~vSA~~g 288 (308)
+ . ..+.|+++++||+|+...... ...+..+....+... +.... ...+.++++||+++
T Consensus 249 ~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~ 328 (353)
T 1cip_A 249 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 328 (353)
T ss_dssp HHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred HHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc
Confidence 2 1 157999999999998643210 001223334333321 11111 23467899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 021764 289 QGRDEILLHMAQLRNY 304 (308)
Q Consensus 289 ~gi~el~~~i~~~~~~ 304 (308)
+||+++|+++.+.+..
T Consensus 329 ~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 329 KNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999987754
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.00 E-value=4.9e-10 Score=107.33 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh------cCCcceeccCC---C-------------CceEEEE---------------E
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLV------RRKKLALTSKT---P-------------GKTQCIN---------------H 166 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~------~~~~~~~~~~~---~-------------~~t~~~~---------------~ 166 (308)
....|+++|.+||||||++++|. +.+ ...++.. + +...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~k-VllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWK-TCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCC-EEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe-EEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 34589999999999999999999 432 2222221 1 0111000 0
Q ss_pred EE-eCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCE-EEEee
Q 021764 167 FR-INDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPM-TLVFT 244 (308)
Q Consensus 167 ~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pv-ivV~N 244 (308)
+. .+..++++||||..... ..+......+. . ....+.+++|+|+..+... ......+.+ .+|+ .+|+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~--~~l~~el~~~~----~-~i~pd~vllVvDa~~g~~~--~~~a~~~~~-~~~i~gvVlN 248 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQE--DSLFEEMLQVA----N-AIQPDNIVYVMDASIGQAC--EAQAKAFKD-KVDVASVIVT 248 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTC--HHHHHHHHHHH----H-HHCCSEEEEEEETTCCTTH--HHHHHHHHH-HHCCCCEEEE
T ss_pred HHHCCCcEEEEeCCCCcccc--hhHHHHHHHHH----h-hhcCceEEEEEeccccccH--HHHHHHHHh-hcCceEEEEe
Confidence 01 12379999999975311 11111111111 1 1134668999999876542 233333333 2675 89999
Q ss_pred cCCCCCcccCCCCCchhhHHHHHHHHHh---------h---hcCCCCEEEeecCCCCC-HHHHHHHHHHH
Q 021764 245 KCDKRKKKKNGGKRPEENLNDFQELIQG---------F---FQTAPPWIMTSSVTNQG-RDEILLHMAQL 301 (308)
Q Consensus 245 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~vSA~~g~g-i~el~~~i~~~ 301 (308)
|+|...... . .-.+...++. . +....+.+++|+..|.| +++|++++.+.
T Consensus 249 K~D~~~~~g-------~-~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKGG-------G-ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCCT-------H-HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccchH-------H-HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999874321 1 1122222210 0 01123446689999999 99999998765
No 214
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.96 E-value=8.4e-10 Score=101.73 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=75.4
Q ss_pred eEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC----------ChhHH--H
Q 021764 161 TQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA----------KPIDL--E 227 (308)
Q Consensus 161 t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~----------~~~~~--~ 227 (308)
+.....+.+++ .+.+|||+|.. .++..+.+||... +++++|+|.++.. +..+. .
T Consensus 190 Gi~~~~~~~~~~~l~i~Dt~Gq~----------~~r~~w~~~f~~~---~~iIfv~dls~~dq~l~ed~~~n~~~es~~~ 256 (362)
T 1zcb_A 190 GIHEYDFEIKNVPFKMVDVGGQR----------SERKRWFECFDSV---TSILFLVSSSEFDQVLMEDRQTNRLTESLNI 256 (362)
T ss_dssp SEEEEEEEETTEEEEEEEECC-----------------CTTSCTTC---CEEEEEEETTCTTCEETTEEEEEHHHHHHHH
T ss_pred ceEEEEeeeCCeEEEEEeccchh----------hhhhhHHHHhCCC---CEEEEEEECccccccccccccccHHHHHHHH
Confidence 33344555555 79999999953 4555677777654 4599999999732 22211 1
Q ss_pred HHHHhc---cCCCCEEEEeecCCCCCcccC-----------CCC-CchhhHHHHH-HHHHhhh----cCCCCEEEeecCC
Q 021764 228 YASWLG---QNQIPMTLVFTKCDKRKKKKN-----------GGK-RPEENLNDFQ-ELIQGFF----QTAPPWIMTSSVT 287 (308)
Q Consensus 228 l~~~~~---~~~~pvivV~NK~Dl~~~~~~-----------~~~-~~~~~~~~~~-~~~~~~~----~~~~~~~~vSA~~ 287 (308)
+..+.. ..+.|+|+++||+|+...+.. ... +..+....+. +.+.... ...+.++++||++
T Consensus 257 ~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d 336 (362)
T 1zcb_A 257 FETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAIN 336 (362)
T ss_dssp HHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTC
T ss_pred HHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCC
Confidence 112222 157899999999998643210 000 1223333322 1221111 2246789999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 021764 288 NQGRDEILLHMAQLRNY 304 (308)
Q Consensus 288 g~gi~el~~~i~~~~~~ 304 (308)
++||+++|+++.+.+.+
T Consensus 337 ~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 337 TENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999887654
No 215
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.86 E-value=3.2e-09 Score=97.53 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=71.7
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC----------CCCChhHHHHHHHh----c---c
Q 021764 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS----------IPAKPIDLEYASWL----G---Q 234 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~----------~~~~~~~~~l~~~~----~---~ 234 (308)
.+.+|||+|.. .++.++.+||...+ ++++|+|.+ +..+..+ ...|+ . .
T Consensus 184 ~l~iwDtaGQe----------~~r~~~~~y~~~~~---~iI~v~dis~ydq~l~e~~~~~s~~~--~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 184 VYRLFDVGGQR----------NERRKWIHLFEGVT---AVIFCAAISEYDQTLFEDEQKNRMME--TKELFDWVLKQPCF 248 (354)
T ss_dssp EEEEEEECCST----------TGGGGTGGGCTTEE---EEEEEEEGGGTTCBCSSCTTSBHHHH--HHHHHHHHHTCGGG
T ss_pred eeEEEECCCch----------hhhHHHHHHhCCCC---EEEEEEECcccccccccccchhHHHH--HHHHHHHHHhcccc
Confidence 58999999953 45567778776554 589999987 2222222 22222 1 2
Q ss_pred CCCCEEEEeecCCCCCcccCCCC-----------------CchhhHHHH-HHHHHhh---h------cCCCCEEEeecCC
Q 021764 235 NQIPMTLVFTKCDKRKKKKNGGK-----------------RPEENLNDF-QELIQGF---F------QTAPPWIMTSSVT 287 (308)
Q Consensus 235 ~~~pvivV~NK~Dl~~~~~~~~~-----------------~~~~~~~~~-~~~~~~~---~------~~~~~~~~vSA~~ 287 (308)
.+.|+++|+||+|+...+..... ...+....+ .+.+... . .....++++||++
T Consensus 249 ~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d 328 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALD 328 (354)
T ss_dssp SSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTC
T ss_pred CCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeec
Confidence 57899999999998643221000 001222222 2221111 0 1123468999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 021764 288 NQGRDEILLHMAQLRNY 304 (308)
Q Consensus 288 g~gi~el~~~i~~~~~~ 304 (308)
++||+++|+++.+.+.+
T Consensus 329 ~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 329 QKLVKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999887654
No 216
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.84 E-value=5.9e-09 Score=97.05 Aligned_cols=126 Identities=12% Similarity=0.140 Sum_probs=77.9
Q ss_pred EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC----------CCChhHHHHHHHh
Q 021764 164 INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI----------PAKPIDLEYASWL 232 (308)
Q Consensus 164 ~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~----------~~~~~~~~l~~~~ 232 (308)
...+.+++ .+.+|||+|.. .++..+.+||..+++ +++|+|.++ ..+..+ ...|+
T Consensus 209 ~~~~~~~~v~l~iwDtaGQe----------~~r~~w~~yf~~a~~---iIfV~dis~ydq~l~ed~~~ns~~e--~~~~~ 273 (402)
T 1azs_C 209 ETKFQVDKVNFHMFDVGGQR----------DERRKWIQCFNDVTA---IIFVVASSSYNMVIREDNQTNRLQE--ALNLF 273 (402)
T ss_dssp EEEEEETTEEEEEEEECCSG----------GGGGGGGGGTTTCCE---EEEEEETTGGGCBCTTTSCSBHHHH--HHHHH
T ss_pred EEEeecCCccceecccchhh----------hhhhhhHhhccCCCE---EEEEEECcccccccccccccchHHH--HHHHH
Confidence 34555555 78999999953 556678888876554 899999987 322222 22332
Q ss_pred c-------cCCCCEEEEeecCCCCCccc---CC----------------------CC-CchhhHHHHH-HHHHhhh----
Q 021764 233 G-------QNQIPMTLVFTKCDKRKKKK---NG----------------------GK-RPEENLNDFQ-ELIQGFF---- 274 (308)
Q Consensus 233 ~-------~~~~pvivV~NK~Dl~~~~~---~~----------------------~~-~~~~~~~~~~-~~~~~~~---- 274 (308)
. ..+.|++||+||+|+...+. .. .. ...+....+. +.+....
T Consensus 274 ~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~ 353 (402)
T 1azs_C 274 KSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASG 353 (402)
T ss_dssp HHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhcccc
Confidence 2 14689999999999864321 00 00 0012233331 1111111
Q ss_pred --cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 275 --QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 --~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+.++++||++++||+++|.++.+.+.+
T Consensus 354 ~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 354 DGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp TTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 013457899999999999999999887654
No 217
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.83 E-value=4.4e-09 Score=88.72 Aligned_cols=116 Identities=9% Similarity=-0.061 Sum_probs=66.9
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhH-HHH---HHHhcc----CCCCEEEEee
Q 021764 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID-LEY---ASWLGQ----NQIPMTLVFT 244 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~-~~l---~~~~~~----~~~pvivV~N 244 (308)
+....+|| .+...+++ .++.+|++||.+.++ +|||+|+++...... .++ ...+.+ .+.|++|.+|
T Consensus 98 ~~~~~~~~-~~~~GGQ~---klRplWr~Yy~~Tdg---lIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlAN 170 (227)
T 3l82_B 98 MFSRHNEG-DDQQGSRY---SVIPQIQKVCEVVDG---FIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSC 170 (227)
T ss_dssp -----------------------CCHHHHHHHCSE---EEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEE
T ss_pred cccccCCC-ccccCcHH---HHHHHHHHHhcCCCE---EEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeC
Confidence 44455665 22233444 677899999988766 899999987643222 233 333432 5789999999
Q ss_pred cC-CCCCcccCCCCCchhhHHHHHHHHHh-hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 245 KC-DKRKKKKNGGKRPEENLNDFQELIQG-FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 245 K~-Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
|. |+.... . ..++.+.++- .....+.+..|||++|+|+.|-++||.+.+..
T Consensus 171 KqqDlp~Am------s---~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 171 ISQGDVKRM------P---CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp ESSTTSCBC------C---HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCcCccCCC------C---HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 95 676543 2 2333333321 12345788999999999999999999876643
No 218
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.83 E-value=1.8e-09 Score=95.22 Aligned_cols=59 Identities=29% Similarity=0.529 Sum_probs=42.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
.+++++|.||||||||+|+|.+... ..+...+|+|+....+..+..+.+|||||+.+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeCCCEEEEECCCcccCc
Confidence 5999999999999999999998754 4567888888876666667789999999998643
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.80 E-value=3e-08 Score=88.24 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021764 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
..++.......+|+|+.|+|+.++.+..+..+.+++ .++|+++|+||+|+.+. +..+.+.+.+.+ .
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~---------~~~~~~~~~~~~---~ 78 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA---------AVTQQWKEHFEN---Q 78 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH---------HHHHHHHHHHHT---T
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH---------HHHHHHHHHHHh---c
Confidence 445555556667889999999998887665666776 47999999999999852 234455555532 2
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+.+++++||+++.|++++++.+.+.+..
T Consensus 79 g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 79 GIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp TCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 3689999999999999999999888764
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.68 E-value=4.6e-08 Score=90.39 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=66.0
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021764 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
+|.+++++++...+ ++++|+|++++......++.+++ .++|+++|+||+|+.+... ..+.++++......
T Consensus 58 ~f~~~l~~i~~~~~---~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~-----~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 58 DFLRILNGIGKSDA---LVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSV-----KHDKVKHWMRYSAK 127 (368)
T ss_dssp HHHHHHHHHHHSCC---EEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTS-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCc---EEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCccc-----CHHHHHHHHHHHHH
Confidence 67788888776543 48999999875322222333443 3799999999999975431 23344444333222
Q ss_pred hhc-CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 273 FFQ-TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 273 ~~~-~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+ ...+++++||++|+|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 211 113789999999999999999997654
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.66 E-value=8.4e-08 Score=88.62 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=68.5
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH-HH
Q 021764 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL-IQ 271 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~ 271 (308)
.|.+++.+++...+ ++++|+|++++......++.+++. ++|+++|+||+|+.+... ..+.++++... +.
T Consensus 60 ~f~~~L~~~~~~~~---lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~~-----~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 60 DFLSMLHRIGESKA---LVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRSV-----KYPKLLRWMRRMAE 129 (369)
T ss_dssp HHHHHHHHHHHHCC---EEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTTC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCc---EEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCCcc-----CHHHHHHHHHHHHH
Confidence 67778888765543 499999999876544444455543 799999999999986431 23334444332 33
Q ss_pred hhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021764 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 272 ~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.......+++.+||++|+|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 2211113789999999999999999997754
No 222
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.64 E-value=2.9e-07 Score=90.41 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=48.9
Q ss_pred CEEEecCCCcccC-CC--chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhccCCCCEEEEeecCC
Q 021764 172 SWYLVDLPGYGYA-AA--PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLGQNQIPMTLVFTKCD 247 (308)
Q Consensus 172 ~~~liDtpG~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~-~~~~~~~l~~~~~~~~~pvivV~NK~D 247 (308)
.+.++|.||+... .. .......+..++..|+.....+ ++.+++.... .......+...+...+.+.|+|+||+|
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~i--il~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETI--SLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCC--EEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCC--ceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 5899999998753 11 2222335556777766554443 6666665533 233345667777777899999999999
Q ss_pred CCCcc
Q 021764 248 KRKKK 252 (308)
Q Consensus 248 l~~~~ 252 (308)
+....
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 98543
No 223
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.61 E-value=7.4e-08 Score=85.11 Aligned_cols=100 Identities=7% Similarity=-0.136 Sum_probs=69.8
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhH-HH---HHHHhc----cCCCCEEEEeec-CCCCCcccCCCCCchhhH
Q 021764 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID-LE---YASWLG----QNQIPMTLVFTK-CDKRKKKKNGGKRPEENL 263 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~-~~---l~~~~~----~~~~pvivV~NK-~Dl~~~~~~~~~~~~~~~ 263 (308)
.++.+|++||.+.++ +|||+|+++...... .+ +...+. ..+.|++|.+|| -|+..... .
T Consensus 199 ~lRplWr~Yy~~tdg---lIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams---------~ 266 (312)
T 3l2o_B 199 SVIPQIQKVCEVVDG---FIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---------C 266 (312)
T ss_dssp CCCHHHHHHHHHCSE---EEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC---------H
T ss_pred HHHHHHHHHhcCCCE---EEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC---------H
Confidence 678899999988766 899999987754322 12 223332 158999999997 58865432 2
Q ss_pred HHHHHHHHh-hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021764 264 NDFQELIQG-FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 264 ~~~~~~~~~-~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++.+.++- .....+.+..|||++|+|+.|-++||.+.+..
T Consensus 267 ~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 267 FYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 333333321 12345788999999999999999999987654
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.56 E-value=7.2e-08 Score=93.87 Aligned_cols=101 Identities=23% Similarity=0.214 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-eeccCCCCceEEEEEEE------eCCCEEEecCCCcccCCCchhhhhchH
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-ALTSKTPGKTQCINHFR------INDSWYLVDLPGYGYAAAPRELRTDWD 195 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-~~~~~~~~~t~~~~~~~------~~~~~~liDtpG~~~~~~~~~~~~~~~ 195 (308)
.....|+|+|.||||||||+|+|++.... .....+.++|.....+. .+..+.++||||+.+...+.. .....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~-~~~~~ 114 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDN-QNDSW 114 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCC-TTHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccch-hHHHH
Confidence 34568999999999999999999997531 11111123333332221 123799999999975322111 00111
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHH
Q 021764 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYAS 230 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~ 230 (308)
.+....+. . -++|+|+....+..+..+..
T Consensus 115 ~fala~ll--s----s~lv~n~~~~i~~~dl~~l~ 143 (592)
T 1f5n_A 115 IFALAVLL--S----STFVYNSIGTINQQAMDQLY 143 (592)
T ss_dssp HHHHHHHH--C----SEEEEEEESCSSHHHHHTTH
T ss_pred HHHHHHHh--c----CeEEEECCCCccHHHHHHHH
Confidence 11111111 1 15677777777776654433
No 225
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.53 E-value=2.4e-07 Score=83.21 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=58.0
Q ss_pred cCCccEEEEEEeCCCCC-ChhHH-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021764 205 RSTLVSVFLLIDASIPA-KPIDL-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 205 ~~~~~~vl~ViD~~~~~-~~~~~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
...+|++++|+|++++. +.... .+...+...++|+++|+||+|+.+..+ .+..+++.+.+... +.++++
T Consensus 77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~------v~~~~~~~~~~~~~---g~~~~~ 147 (302)
T 2yv5_A 77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEE------KKELERWISIYRDA---GYDVLK 147 (302)
T ss_dssp EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHH------HHHHHHHHHHHHHT---TCEEEE
T ss_pred HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccc------cHHHHHHHHHHHHC---CCeEEE
Confidence 34456799999999875 44321 233334457899999999999975320 01133444444322 368999
Q ss_pred eecCCCCCHHHHHHHHH
Q 021764 283 TSSVTNQGRDEILLHMA 299 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~ 299 (308)
+||++|+|++++++.+.
T Consensus 148 ~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 148 VSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CCTTTCTTHHHHHHHTT
T ss_pred EECCCCCCHHHHHhhcc
Confidence 99999999999998764
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.50 E-value=4.1e-07 Score=85.52 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc-----CCcceeccCC----------------CCceEEEE---------------EEE
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVR-----RKKLALTSKT----------------PGKTQCIN---------------HFR 168 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~-----~~~~~~~~~~----------------~~~t~~~~---------------~~~ 168 (308)
...|+++|.+||||||++..|.. +..+..+... .+...... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999974 1122211111 11111100 000
Q ss_pred e-CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCC
Q 021764 169 I-NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247 (308)
Q Consensus 169 ~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~D 247 (308)
. +..++++||||.... ..++-.++..+ ......+.+++|+|+..+... ......+.+.-.+..+|+||+|
T Consensus 180 ~~~~DvVIIDTaGrl~~--d~~lm~el~~i-----~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE--DKALIEEMKQI-----SNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp HTTCSEEEEECCCCSSC--CHHHHHHHHHH-----HHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCS
T ss_pred hCCCCEEEEECCCcccc--hHHHHHHHHHH-----HHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCC
Confidence 0 137999999996431 12211111111 111223569999999875332 2334444444456679999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHH
Q 021764 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~e 293 (308)
..... ......... .+.|+.+++. |+++++
T Consensus 251 ~~~~g-----------G~~ls~~~~---~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 251 GSAKG-----------GGALSAVAA---TGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp SCSSH-----------HHHHHHHHT---TCCCEEEEEC--SSSTTC
T ss_pred Ccccc-----------cHHHHHHHH---HCCCEEEEEc--CCChHH
Confidence 86432 112222221 2478888886 665543
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.47 E-value=1.8e-07 Score=88.12 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCC------------------------CceEEE--------EEE
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTP------------------------GKTQCI--------NHF 167 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~------------------------~~t~~~--------~~~ 167 (308)
...|+++|.+||||||+++.|... .....++..+ +++.+. ..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 347999999999999999999873 1111111110 011110 001
Q ss_pred EeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-C-EEEEeec
Q 021764 168 RINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-P-MTLVFTK 245 (308)
Q Consensus 168 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~-p-vivV~NK 245 (308)
.+..++++||||.... ... +...+.. +......+.+++|+|+..+.. .......+.. .. | ..+|+||
T Consensus 179 -~~~D~vIIDT~G~~~~--~~~----l~~~l~~-i~~~~~~d~vllVvda~~g~~--~~~~~~~~~~-~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 -KKADVLIIDTAGRHKE--EKG----LLEEMKQ-IKEITNPDEIILVIDGTIGQQ--AGIQAKAFKE-AVGEIGSIIVTK 247 (432)
T ss_dssp -SSCSEEEEECCCSCSS--HHH----HHHHHHH-TTSSSCCSEEEEEEEGGGGGG--HHHHHHHHHT-TSCSCEEEEEEC
T ss_pred -hCCCEEEEcCCCCccc--cHH----HHHHHHH-HHHHhcCcceeEEeeccccHH--HHHHHHHHhh-cccCCeEEEEeC
Confidence 1237999999997531 111 1111111 222234577999999976542 2222333332 35 5 8899999
Q ss_pred CCCCC
Q 021764 246 CDKRK 250 (308)
Q Consensus 246 ~Dl~~ 250 (308)
+|...
T Consensus 248 ~D~~~ 252 (432)
T 2v3c_C 248 LDGSA 252 (432)
T ss_dssp SSSCS
T ss_pred CCCcc
Confidence 99763
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.34 E-value=2.5e-07 Score=81.35 Aligned_cols=81 Identities=10% Similarity=0.040 Sum_probs=58.6
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021764 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....+|+|+.|+|+..+....+..+. ++ ++|.++|+||+|+.+. +..+.+.+.+.+. +.++ .
T Consensus 17 ~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~---------~~~~~~~~~~~~~---g~~v-~ 79 (262)
T 3cnl_A 17 DLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADE---------KTTKKWVEFFKKQ---GKRV-I 79 (262)
T ss_dssp HHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCH---------HHHHHHHHHHHHT---TCCE-E
T ss_pred HHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCH---------HHHHHHHHHHHHc---CCeE-E
Confidence 444566789999999988766543333 33 8999999999999853 2244555555432 3567 9
Q ss_pred eecCCCCCHHHHHHHHHH
Q 021764 283 TSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~ 300 (308)
+||+++.|+++|++.+.+
T Consensus 80 iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 80 TTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ECCTTSCHHHHHHHHCCC
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 999999999999887654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.25 E-value=2.3e-06 Score=80.29 Aligned_cols=145 Identities=21% Similarity=0.126 Sum_probs=75.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----Ccceecc----------------CCCCceEEEE---------------EEE
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTS----------------KTPGKTQCIN---------------HFR 168 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~----------------~~~~~t~~~~---------------~~~ 168 (308)
..-|+++|.+||||||++..|... ..+..+. ...+...... ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 347899999999999999999731 1111111 1111111100 000
Q ss_pred e-CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCC
Q 021764 169 I-NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247 (308)
Q Consensus 169 ~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~D 247 (308)
. +..++++||||.........+..+...+. ... ..+.+++|+|+..+... ......+.+.-.+..||+||+|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~----~~~-~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMY----DVL-KPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHH----HHH-CCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHH----Hhh-CCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccc
Confidence 0 23689999999532001111111211121 111 23458999999865332 2334444433456789999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHH
Q 021764 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 292 (308)
..... ...-.+.... +.|+.+++. |++++
T Consensus 250 ~~a~~--------G~als~~~~~------g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 250 GTAKG--------GGALSAVVAT------GATIKFIGT--GEKID 278 (433)
T ss_dssp GCSCH--------HHHHHHHHHH------TCEEEEEEC--CSSSS
T ss_pred ccccc--------hHHHHHHHHH------CCCEEEEEC--CCChH
Confidence 76421 1122222222 378888886 66653
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.97 E-value=1e-05 Score=72.30 Aligned_cols=145 Identities=23% Similarity=0.178 Sum_probs=73.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCC----------------CceEEE---------------EEEE-
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTP----------------GKTQCI---------------NHFR- 168 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~----------------~~t~~~---------------~~~~- 168 (308)
..|+++|.+|+||||++..|... .........+ +..... ....
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~ 178 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS 178 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 36889999999999999999741 1111111110 110000 0001
Q ss_pred eCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCC
Q 021764 169 INDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCD 247 (308)
Q Consensus 169 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~D 247 (308)
.+..++++||||.........+-.+ +... ......+.+++|+|+..+. ...+....+.. ..+ ..+|+||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~e----l~~i-~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEE----MKNI-YEAIKPDEVTLVIDASIGQ--KAYDLASKFNQ-ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHH----HHHH-HHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHH----HHHH-HHHhcCCEEEEEeeCCchH--HHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 1227999999996530011111001 1111 1112345689999997542 22223333333 356 778999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021764 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
.... ......... . ...|+.+++ +|++++++
T Consensus 251 ~~~~-----------~g~~~~~~~-~--~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 251 GTAK-----------GGGALSAVA-A--TGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GCTT-----------HHHHHHHHH-T--TTCCEEEEE--CSSSTTCE
T ss_pred CCcc-----------hHHHHHHHH-H--HCcCEEEEe--CCCChhhc
Confidence 7532 112222222 1 237888877 57777654
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.97 E-value=8.9e-06 Score=74.46 Aligned_cols=122 Identities=21% Similarity=0.259 Sum_probs=62.8
Q ss_pred HHHHhhcCeEEcCCCCCcCCCchhhHHHHh-----CCCe--EEEeecccchhhh-------hHHHhhcccCC-CCCCC--
Q 021764 60 PHVAISLEKLFVPPETEVSIDDSSLSTRIL-----KGSN--IVLSKYARDAQVA-------QAEFVKSSVRT-EDCPS-- 122 (308)
Q Consensus 60 ~~~~~~~~~i~v~~gt~~~~~~~~~~~~~~-----~~~~--i~~~~~~~~~~~~-------~~~f~~s~~~~-~~~~~-- 122 (308)
+.+++++|.+++++........+ .++..+ .+.. |+++|.+...... ...|....... .-.+.
T Consensus 125 ~~i~anvD~v~iv~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 125 KPIAANIDQIVIVSAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEEEECCCEEEEEEESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHHHhcCCEEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 34579999988888765433333 344433 3444 6677766432111 11222111110 00001
Q ss_pred ----------CCCCeEEEEcCCCCCHHHHHHHHhcCCc-ce--eccCCCC----ceEEEEEEEeCCCEEEecCCCccc
Q 021764 123 ----------DGLPEFALVGRSNVGKSSLLNSLVRRKK-LA--LTSKTPG----KTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 123 ----------~~~~~I~lvG~~~vGKSSLin~l~~~~~-~~--~~~~~~~----~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.+ -.++|+|++|||||||+|.|++... .. .+....| ++.......+.....++|+||+.+
T Consensus 204 ~gl~~L~~~~~G-~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 204 DGLKPLEEALTG-RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp BTHHHHHHHHTT-SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred cCHHHHHHhcCC-CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 12 2799999999999999999998643 11 1111112 222222333444556899999754
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.83 E-value=1.1e-05 Score=72.46 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=59.4
Q ss_pred cCCccEEEEEEeCCCCCChhHHHHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021764 205 RSTLVSVFLLIDASIPAKPIDLEYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 205 ~~~~~~vl~ViD~~~~~~~~~~~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
...+|.+++|+|+..+....+ .+.+++ ...++|.++|+||+|+.+... ..+.++.+.+.+... +.+++
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~-----~~~~~~~~~~~y~~~---g~~v~ 154 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQD-----TEDTIQAYAEDYRNI---GYDVY 154 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHH-----HHHHHHHHHHHHHHH---TCCEE
T ss_pred HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhh-----hHHHHHHHHHHHHhC---CCeEE
Confidence 455688999999998766655 445554 357899999999999986320 002355666655432 36899
Q ss_pred EeecCCCCCHHHHHHH
Q 021764 282 MTSSVTNQGRDEILLH 297 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~ 297 (308)
.+||.++.|+++|++.
T Consensus 155 ~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 155 LTSSKDQDSLADIIPH 170 (307)
T ss_dssp ECCHHHHTTCTTTGGG
T ss_pred EEecCCCCCHHHHHhh
Confidence 9999999998887654
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.76 E-value=0.00013 Score=66.11 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.-|+++|++||||||+++.|.+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999987
No 234
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.58 E-value=1.9e-05 Score=70.84 Aligned_cols=124 Identities=21% Similarity=0.237 Sum_probs=62.9
Q ss_pred CCchHHHHhhcCeEEcC-CCCCcCCCchhhHHHHh-----CCCe--EEEeecccchh-h-----hh-HHHhhc-ccC---
Q 021764 56 PEPEPHVAISLEKLFVP-PETEVSIDDSSLSTRIL-----KGSN--IVLSKYARDAQ-V-----AQ-AEFVKS-SVR--- 116 (308)
Q Consensus 56 ~~~~~~~~~~~~~i~v~-~gt~~~~~~~~~~~~~~-----~~~~--i~~~~~~~~~~-~-----~~-~~f~~s-~~~--- 116 (308)
..+..++++++|.++++ +........+ .+++.+ .+.. |+++|.+.... . .+ ..++.. ...
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 34556689999995544 4444444444 344433 3444 66777764321 1 11 122211 110
Q ss_pred --------CCCC--CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-------CceEEEEEEEeCCCEEEecCC
Q 021764 117 --------TEDC--PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-------GKTQCINHFRINDSWYLVDLP 179 (308)
Q Consensus 117 --------~~~~--~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtp 179 (308)
.... ...+. .++|+|++|||||||+|.|.+.... .+.... ++|.....+... ...++|||
T Consensus 156 ~sa~~~~g~~~L~~~~~G~-~~~lvG~sG~GKSTLln~L~g~~~~-~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtp 232 (307)
T 1t9h_A 156 TSSKDQDSLADIIPHFQDK-TTVFAGQSGVGKSSLLNAISPELGL-RTNEISEHLGRGKHTTRHVELIHTS-GGLVADTP 232 (307)
T ss_dssp CCHHHHTTCTTTGGGGTTS-EEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSC
T ss_pred EecCCCCCHHHHHhhcCCC-EEEEECCCCCCHHHHHHHhcccccc-cccceeeecCCCcccccHHHHhhcC-CEEEecCC
Confidence 0000 01232 7999999999999999999985421 111111 233222223333 45789999
Q ss_pred Cccc
Q 021764 180 GYGY 183 (308)
Q Consensus 180 G~~~ 183 (308)
|+..
T Consensus 233 g~~~ 236 (307)
T 1t9h_A 233 GFSS 236 (307)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 9864
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.57 E-value=0.00016 Score=68.00 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
...-|+|+|.+++|||+|+|+|++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 345799999999999999999986
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.48 E-value=0.0005 Score=64.56 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHh
Q 021764 125 LPEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~ 146 (308)
...|+++|.+||||||++..|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4478899999999999999987
No 237
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.45 E-value=0.00018 Score=64.26 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-------CceEEEEEEEeCCCEEEecCCCcc
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-------GKTQCINHFRINDSWYLVDLPGYG 182 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpG~~ 182 (308)
.++++|++|||||||+|.|. ... +...... .+|.....+.....-.++|+||+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 68999999999999999999 542 2111111 123222333333456789999975
No 238
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.43 E-value=0.00064 Score=62.14 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=52.5
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021764 206 STLVSVFLLIDASIPAKPIDLEYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 206 ~~~~~vl~ViD~~~~~~~~~~~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
..+|.+++| |+..+..... .+.+++ ...++|.+||+||+|+.+.. ..+.++.+...+. ..+.+++.
T Consensus 129 anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~------~~~~~~~~~~~y~---~~G~~v~~ 197 (358)
T 2rcn_A 129 ANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDE------GMDFVNEQMDIYR---NIGYRVLM 197 (358)
T ss_dssp ECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHH------HHHHHHHHHHHHH---TTTCCEEE
T ss_pred hcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCch------hHHHHHHHHHHHH---hCCCcEEE
Confidence 345656655 5555544333 344444 34678999999999998532 1112444544443 23578999
Q ss_pred eecCCCCCHHHHHHHH
Q 021764 283 TSSVTNQGRDEILLHM 298 (308)
Q Consensus 283 vSA~~g~gi~el~~~i 298 (308)
+||.++.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999987653
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.38 E-value=0.00097 Score=63.35 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|+|.+|||||||++.|.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 699999999999999999986
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.33 E-value=0.00086 Score=60.01 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+++|.+|+||||++..|.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 689999999999999999876
No 241
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.30 E-value=0.00017 Score=64.40 Aligned_cols=57 Identities=33% Similarity=0.414 Sum_probs=34.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce--eccC----CCCceEEEEEEEeCCCEEEecCCCccc
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRKKLA--LTSK----TPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~--~~~~----~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.++++|++|||||||+|.|.+..... .+.. -..+|.....+.......++|+||+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 68999999999999999999864311 1110 111222122233333457889999753
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.05 E-value=0.00017 Score=60.34 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|||||||+++|.+.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6899999999999999999974
No 243
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.04 E-value=0.012 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.-|+++|.+|+||||++..|.+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 244
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.83 E-value=0.00024 Score=58.93 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021764 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999864
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.72 E-value=0.0074 Score=56.36 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+++|.+|+||||++..|.+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998875
No 246
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.72 E-value=0.00078 Score=55.31 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+++|+|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999885
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.00086 Score=54.88 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999874
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.61 E-value=0.00094 Score=55.62 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999873
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.45 E-value=0.0014 Score=54.87 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.|.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999884
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.45 E-value=0.0014 Score=54.33 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.44 E-value=0.0014 Score=53.83 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3799999999999999999974
No 252
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.40 E-value=0.0016 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999875
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.37 E-value=0.0016 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|||||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999884
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.28 E-value=0.0019 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.|.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999985
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.24 E-value=0.0019 Score=54.10 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|++|+|||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999874
No 256
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.20 E-value=0.0023 Score=51.92 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++++|++|+|||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 589999999999999998664
No 257
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.20 E-value=0.0023 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6999999999999999999985
No 258
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.15 E-value=0.0021 Score=60.92 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+++|.+|+||||+.++|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 259
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.14 E-value=0.0098 Score=49.02 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=39.0
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecC
Q 021764 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKC 246 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~ 246 (308)
.++++|+|+... ......+.. +|.++++++.+... ..-..+...+.. .+.++.+|+|++
T Consensus 77 D~viiD~~~~~~------------~~~~~~l~~---ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 77 DFAIVDGAGSLS------------VITSAAVMV---SDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp SEEEEECCSSSS------------HHHHHHHHH---CSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CEEEEECCCCCC------------HHHHHHHHH---CCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 689999998431 122233333 34588888887655 444445555543 246779999999
Q ss_pred CCC
Q 021764 247 DKR 249 (308)
Q Consensus 247 Dl~ 249 (308)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 954
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.12 E-value=0.0026 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|||||||++.|.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999875
No 261
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.11 E-value=0.0026 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 262
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.10 E-value=0.0029 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999985
No 263
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.06 E-value=0.003 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+|+||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
No 264
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.04 E-value=0.026 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHh
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~ 146 (308)
....-|+|+|..++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 345578899999999999999665
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.02 E-value=0.0032 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+||||||+++.|.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999875
No 266
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.02 E-value=0.0034 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.00 E-value=0.0034 Score=51.41 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 268
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.99 E-value=0.0033 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+|+|||||++.|.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999884
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.98 E-value=0.0034 Score=53.87 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|++|+|||||++.|.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999853
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.96 E-value=0.0034 Score=54.73 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.96 E-value=0.004 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 272
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.95 E-value=0.0035 Score=55.12 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999985
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.94 E-value=0.0037 Score=52.87 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 274
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.94 E-value=0.0036 Score=54.78 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999985
No 275
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.93 E-value=0.0045 Score=50.59 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+-++++|.+|+|||||+++|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 457999999999999999999874
No 276
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.93 E-value=0.0037 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|.+|||||||++.|...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999864
No 277
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.92 E-value=0.0037 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.91 E-value=0.0038 Score=53.96 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999985
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.91 E-value=0.0038 Score=51.79 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+|+|||||++.|.+.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999763
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.90 E-value=0.0039 Score=53.71 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999985
No 281
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.88 E-value=0.0062 Score=50.35 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=23.4
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
........|+|.|.+|+||||+.+.|...
T Consensus 10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 10 FSPDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp SCTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33445558999999999999999999753
No 282
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.88 E-value=0.004 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999874
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.87 E-value=0.0041 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 284
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.86 E-value=0.0041 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 6899999999999999999985
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.85 E-value=0.0042 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.84 E-value=0.0045 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 287
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.84 E-value=0.0048 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 288
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.82 E-value=0.0044 Score=55.34 Aligned_cols=21 Identities=48% Similarity=0.686 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 799999999999999999986
No 289
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.80 E-value=0.0045 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.80 E-value=0.0045 Score=53.91 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6999999999999999999985
No 291
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.79 E-value=0.0045 Score=53.56 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
No 292
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.79 E-value=0.0048 Score=53.98 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 293
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.77 E-value=0.0046 Score=54.19 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 294
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.76 E-value=0.0054 Score=52.59 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHh
Q 021764 126 PEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~ 146 (308)
..|+|+|.+|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999999
No 295
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.76 E-value=0.0038 Score=52.53 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 296
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.75 E-value=0.0051 Score=49.04 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHH
Q 021764 127 EFALVGRSNVGKSSLLNSL 145 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l 145 (308)
-|+|+|.+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 297
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.74 E-value=0.0049 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6999999999999999999873
No 298
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.73 E-value=0.0026 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+|||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.73 E-value=0.0052 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+|+||||+.+.|.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999876
No 300
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.72 E-value=0.005 Score=54.24 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.69 E-value=0.0035 Score=53.22 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=15.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh-cC
Q 021764 127 EFALVGRSNVGKSSLLNSLV-RR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~-~~ 148 (308)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 64
No 302
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.69 E-value=0.0052 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.68 E-value=0.0052 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.67 E-value=0.0069 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.66 E-value=0.0056 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|.+|+||||+.+.|.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
No 306
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.65 E-value=0.0059 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 307
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.62 E-value=0.0063 Score=48.96 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+++|.||+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 308
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.62 E-value=0.0056 Score=51.40 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.60 E-value=0.0056 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.-|+|+|++|+|||||++.|.+-
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 37999999999999999999874
No 310
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.53 E-value=0.0056 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 311
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.52 E-value=0.0082 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999985
No 312
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.50 E-value=0.007 Score=48.78 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+++|.+|+||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999873
No 313
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.49 E-value=0.0071 Score=51.43 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||++.+++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999883
No 314
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.49 E-value=0.0046 Score=55.25 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 7999999999999999999884
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.49 E-value=0.0073 Score=52.70 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 316
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.47 E-value=0.0077 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|.|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 317
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.46 E-value=0.0078 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 318
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.44 E-value=0.0072 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999999853
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.40 E-value=0.0082 Score=49.34 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999863
No 320
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.39 E-value=0.0079 Score=54.99 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58999999999999999999853
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.37 E-value=0.0079 Score=51.58 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|+.|+|||||++.|.+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999987
No 322
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.36 E-value=0.0077 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|+.|+|||||++.|.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999853
No 323
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.34 E-value=0.0066 Score=55.41 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+++|+|.+|+|||||++.|.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999985
No 324
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.33 E-value=0.0085 Score=54.60 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.|.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999853
No 325
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.33 E-value=0.01 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
++.++++|.+|+|||||+++|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999863
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.27 E-value=0.011 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999885
No 327
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.27 E-value=0.0091 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 58999999999999999999853
No 328
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.27 E-value=0.01 Score=49.51 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999965
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.26 E-value=0.012 Score=47.81 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+++|.+|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 330
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.26 E-value=0.0069 Score=47.99 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999884
No 331
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.26 E-value=0.0091 Score=54.89 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.|.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58999999999999999999853
No 332
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.23 E-value=0.0094 Score=54.47 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999999853
No 333
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.21 E-value=0.011 Score=49.38 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999965
No 334
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.20 E-value=0.014 Score=47.58 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999764
No 335
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.20 E-value=0.0099 Score=54.55 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|+|||||++.|.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58999999999999999999853
No 336
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.19 E-value=0.011 Score=48.12 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 337
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.19 E-value=0.01 Score=48.32 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+|+||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 338
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.16 E-value=0.01 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999999853
No 339
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.14 E-value=0.042 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+++|.||+||||+.++|...
T Consensus 260 lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999764
No 340
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.14 E-value=0.016 Score=46.79 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 341
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.14 E-value=0.011 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999763
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.13 E-value=0.012 Score=47.73 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+||||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999975
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.12 E-value=0.016 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 344
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.08 E-value=0.011 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|++.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999985
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.08 E-value=0.014 Score=49.10 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 346
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.07 E-value=0.01 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+|||||++.|.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999873
No 347
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.06 E-value=0.01 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999873
No 348
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.06 E-value=0.011 Score=53.43 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
No 349
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.05 E-value=0.011 Score=49.01 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.-|+|+|.+|+|||||++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 350
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.02 E-value=0.011 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.|+++|++|||||||++.|.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3799999999999999999985
No 351
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.97 E-value=0.012 Score=51.56 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021764 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
++|+|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 352
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.96 E-value=0.012 Score=54.26 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6999999999999999999984
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.91 E-value=0.017 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.90 E-value=0.016 Score=51.97 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
...+-|+|+|.+|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999876
No 355
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.89 E-value=0.0088 Score=54.38 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58999999999999999999853
No 356
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.87 E-value=0.013 Score=50.21 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021764 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
++|+|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999874
No 357
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.84 E-value=0.016 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+|+|.+|+||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999875
No 358
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.83 E-value=0.015 Score=48.00 Aligned_cols=21 Identities=33% Similarity=0.265 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+|+||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 359
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.82 E-value=0.013 Score=53.71 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||||++.|++.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999873
No 360
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.81 E-value=0.016 Score=49.93 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHh
Q 021764 126 PEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~ 146 (308)
..|+|+|++|+||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999998
No 361
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.80 E-value=0.018 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+|+|.+|+|||||++.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 362
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.80 E-value=0.014 Score=51.98 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++++|++||||||+++.|.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.79 E-value=0.016 Score=46.09 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 364
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.79 E-value=0.016 Score=47.74 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|.|.+||||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
No 365
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.78 E-value=0.016 Score=47.09 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+|+||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 366
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.78 E-value=0.02 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.77 E-value=0.018 Score=48.59 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 368
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.77 E-value=0.017 Score=46.89 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+.|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 369
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.77 E-value=0.0064 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.77 E-value=0.015 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 371
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.76 E-value=0.017 Score=48.29 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 372
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.74 E-value=0.016 Score=47.20 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+++|.+|+||||+.+.|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999763
No 373
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.71 E-value=0.012 Score=49.82 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|..|+|||||++.|.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999774
No 374
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.71 E-value=0.016 Score=48.49 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||++.+++
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.70 E-value=0.016 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 376
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.66 E-value=0.0086 Score=54.57 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999853
No 377
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.66 E-value=0.02 Score=45.71 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 378
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.64 E-value=0.064 Score=44.66 Aligned_cols=64 Identities=6% Similarity=-0.130 Sum_probs=37.1
Q ss_pred CEEEecCCCc-ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-CCCCEEEEeecCCCC
Q 021764 172 SWYLVDLPGY-GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-NQIPMTLVFTKCDKR 249 (308)
Q Consensus 172 ~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ViD~~~~~~~~~~~l~~~~~~-~~~pvivV~NK~Dl~ 249 (308)
.++++|||+. .. . .....+.. +|.+++++..+...-..-..+.+++.. .+.++.+|+|++|..
T Consensus 69 D~viiD~p~~~~~-~-----------~~~~~l~~---aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 69 QNIVIDTQARPED-E-----------DLEALADG---CDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp SEEEEEEECCCSS-S-----------HHHHHHHT---SSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred CEEEEeCCCCcCc-H-----------HHHHHHHH---CCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 7999999985 21 1 22233333 345888887763211111233444444 367789999999865
Q ss_pred C
Q 021764 250 K 250 (308)
Q Consensus 250 ~ 250 (308)
.
T Consensus 134 ~ 134 (209)
T 3cwq_A 134 P 134 (209)
T ss_dssp T
T ss_pred c
Confidence 3
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.63 E-value=0.018 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+|+||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999976
No 380
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.63 E-value=0.018 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+|+||||+.+.|.+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 381
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.57 E-value=0.018 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999763
No 382
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.57 E-value=0.022 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
...|+|.|.|||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999975
No 383
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.56 E-value=0.013 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
++-++|+|..|+|||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 456899999999999999999974
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.55 E-value=0.019 Score=46.39 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.+|+|+.|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 385
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.51 E-value=0.019 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.50 E-value=0.026 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+|+|.+|+||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999763
No 387
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.50 E-value=0.02 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+|+||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999976
No 388
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.49 E-value=0.018 Score=50.69 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|+|||||+..+++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 389
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.48 E-value=0.018 Score=53.68 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 390
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.47 E-value=0.019 Score=49.57 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|+|||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999999763
No 391
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.46 E-value=0.019 Score=54.99 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999873
No 392
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.45 E-value=0.021 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 393
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.44 E-value=0.019 Score=50.02 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021764 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999874
No 394
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.43 E-value=0.02 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+++|+|++|+|||||++.|.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999985
No 395
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.40 E-value=0.019 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.-|+|+|.|||||||+.+.|..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 396
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.38 E-value=0.019 Score=54.24 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 7999999999999999999984
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.36 E-value=0.02 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999874
No 398
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.36 E-value=0.024 Score=49.00 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+++|.|||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 399
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.30 E-value=0.026 Score=47.28 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 400
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.30 E-value=0.022 Score=49.25 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+|+||||+.+.|.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 401
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.28 E-value=0.025 Score=54.93 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7999999999999999999985
No 402
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.23 E-value=0.026 Score=47.53 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 403
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.21 E-value=0.018 Score=46.48 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=15.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 404
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.20 E-value=0.024 Score=47.02 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 405
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.18 E-value=0.023 Score=51.84 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+++|.+||||||+++.|.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 689999999999999999987
No 406
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.17 E-value=0.029 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
....|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999976
No 407
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.14 E-value=0.029 Score=54.54 Aligned_cols=22 Identities=50% Similarity=0.652 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999985
No 408
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.11 E-value=0.025 Score=47.71 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|+|||||+..+++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999873
No 409
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.10 E-value=0.031 Score=44.55 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+-.|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 410
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.05 E-value=0.027 Score=54.17 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=22.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|. .++|+|+.|+|||||++.|.+.
T Consensus 45 ~~Ge-~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 45 KEGM-VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CTTS-EEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHhCC
Confidence 3444 7999999999999999999985
No 411
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.04 E-value=0.031 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|+.|+|||||++.|.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999985
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.04 E-value=0.03 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.04 E-value=0.027 Score=47.04 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 414
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.00 E-value=0.028 Score=46.78 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+++|.+|+||||+.+.|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 415
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.96 E-value=0.026 Score=53.46 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||++.|.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999987
No 416
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.95 E-value=0.027 Score=52.77 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+++|+|++|+|||||++.|.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999985
No 417
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.94 E-value=0.026 Score=55.03 Aligned_cols=22 Identities=50% Similarity=0.597 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999985
No 418
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.85 E-value=0.029 Score=54.74 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 8999999999999999999985
No 419
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.81 E-value=0.025 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+++|.||+||||+.+.|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999763
No 420
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.80 E-value=0.031 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|.|++|+|||+|++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
No 421
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.78 E-value=0.032 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|.+|+||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
No 422
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.73 E-value=0.04 Score=48.32 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021764 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
....|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999973
No 423
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.033 Score=54.38 Aligned_cols=28 Identities=36% Similarity=0.633 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCC
Q 021764 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
..+|. .++|+|+.|+|||||++.|.+-.
T Consensus 100 ~~~Ge-i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQ-VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTS-EEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCC-EEEEECCCCChHHHHHHHHhcCC
Confidence 34555 69999999999999999999853
No 424
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.66 E-value=0.026 Score=54.79 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7999999999999999999884
No 425
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.62 E-value=0.036 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|+..+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 426
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.61 E-value=0.026 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|+..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 427
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.60 E-value=0.031 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999884
No 428
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.59 E-value=0.035 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.++|+|++|+|||||++.|.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999986
No 429
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.53 E-value=0.041 Score=46.47 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021764 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|.|+|+|||||+|....|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999864
No 430
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.53 E-value=0.039 Score=45.36 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 431
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.52 E-value=0.042 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999763
No 432
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.51 E-value=0.027 Score=59.96 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|||++|+|||||++.|.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 8999999999999999999873
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.42 E-value=0.046 Score=43.10 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.+|+|+.|+|||||+.++.-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999863
No 434
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.35 E-value=0.038 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=22.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 122 SDGLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|. .++|+|+.|+|||||++.|.+.
T Consensus 115 ~~Ge-~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 115 KDGM-VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CTTS-EEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCC-EEEEECCCCChHHHHHHHHhCC
Confidence 4454 7999999999999999999985
No 435
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.33 E-value=0.039 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 436
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.27 E-value=0.045 Score=48.06 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+++|.||+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 437
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.25 E-value=0.056 Score=46.17 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|++|+||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.14 E-value=0.049 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.13 E-value=0.045 Score=47.68 Aligned_cols=21 Identities=38% Similarity=0.275 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||+..+++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 440
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.13 E-value=0.047 Score=49.78 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 021764 127 EFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~ 146 (308)
-.+|+|+.|+|||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 36799999999999999987
No 441
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.02 E-value=0.052 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|+.|+|||||++.|.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 442
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.02 E-value=0.051 Score=45.13 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+.|.|++|+|||+|+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.97 E-value=0.068 Score=45.29 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|.+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999886
No 444
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.93 E-value=0.054 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+.|.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999763
No 445
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.88 E-value=0.051 Score=48.10 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+++|.+|+||||++..|.+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
No 446
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.83 E-value=0.054 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 447
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.75 E-value=0.13 Score=43.52 Aligned_cols=40 Identities=15% Similarity=-0.036 Sum_probs=26.8
Q ss_pred EEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021764 211 VFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 211 vl~ViD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
-++++|-.........+....+...++++++++-..|-..
T Consensus 91 dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 91 KVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp CEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 3677887765544333444444446899999999998654
No 448
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.71 E-value=0.056 Score=47.27 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|.|.|+||+|||+|++++.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 37999999999999999999874
No 449
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.69 E-value=0.064 Score=44.69 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||+|...|...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999875
No 450
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.67 E-value=0.058 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|+||+|||+|++++.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999864
No 451
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.06 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 021764 128 FALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~ 149 (308)
++|+|+.|+|||||++.|.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999853
No 452
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.59 E-value=0.07 Score=41.58 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|.|.|++|+|||++..++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5999999999999999999764
No 453
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.56 E-value=0.072 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHh
Q 021764 123 DGLPEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~ 146 (308)
....||+|+|.+|+|||||+.++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 446799999999999999999873
No 454
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.54 E-value=0.066 Score=45.14 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999887764
No 455
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.47 E-value=0.085 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|.|.|+||+|||+|++++.+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 456
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.46 E-value=0.086 Score=46.24 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...+.|.|+||+|||++++++...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999887763
No 457
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.39 E-value=0.062 Score=45.00 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.+++.|+||+|||+++.++.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888876
No 458
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.39 E-value=0.078 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+++|+|.|||||||+...|...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999763
No 459
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.35 E-value=0.07 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.+.|.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999887
No 460
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.35 E-value=0.067 Score=47.21 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|.|.|+||+|||+|++++.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999874
No 461
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.23 E-value=0.067 Score=48.12 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|.|++|+|||||++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 462
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.23 E-value=0.076 Score=47.99 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999874
No 463
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.22 E-value=0.09 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+.|.|+||+|||+|..++...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4667799999999999999864
No 464
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.19 E-value=0.012 Score=50.10 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021764 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
++|+|++|+|||||++.+++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999874
No 465
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.13 E-value=0.073 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.-+.|.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999874
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.11 E-value=0.092 Score=47.05 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.+++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 467
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.05 E-value=0.11 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+.|+|+|.+|+||||+...|.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999988763
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.97 E-value=0.077 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+.|+|++|+|||||+..+++.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 469
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.80 E-value=0.052 Score=52.39 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+|+|||||++.|.+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 6999999999999999999874
No 470
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.77 E-value=0.091 Score=55.98 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 8999999999999999999985
No 471
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.60 E-value=0.099 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|||||||...|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 6899999999999999999864
No 472
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.59 E-value=0.11 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|.|++|+|||++++.+.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999999873
No 473
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.59 E-value=0.1 Score=42.40 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|++|+||||+.-.|...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999999875
No 474
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.57 E-value=0.093 Score=55.75 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999884
No 475
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.56 E-value=0.11 Score=43.20 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.+|+|+.|+|||||+.+|.-
T Consensus 25 ~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999853
No 476
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.55 E-value=0.095 Score=45.79 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|+||+|||++++++...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
No 477
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.53 E-value=0.095 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||||...|...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 478
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.42 E-value=0.1 Score=45.08 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|+.++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999874
No 479
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.42 E-value=0.069 Score=46.06 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021764 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+|.|.+|+||||+++.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999998764
No 480
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.36 E-value=0.065 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+-|+|.|.+|+||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999876
No 481
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.32 E-value=0.067 Score=41.60 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|.|.|++|+|||++..++...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5999999999999999988764
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.24 E-value=0.11 Score=44.16 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|++.|.+|+||||+++.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 483
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.14 E-value=0.15 Score=45.99 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|+|||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 484
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.09 E-value=0.065 Score=55.02 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|+|.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 485
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.91 E-value=0.12 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-|+++|.+|+||||+...|....
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHhcC
Confidence 69999999999999999999853
No 486
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.90 E-value=0.12 Score=53.19 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.++
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999964
No 487
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.87 E-value=0.13 Score=43.15 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021764 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|.|.+|+||||+++.|..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999865
No 488
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.86 E-value=0.12 Score=46.08 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+.|.|++|+|||++++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 489
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.86 E-value=0.077 Score=52.40 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 021764 127 EFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~ 146 (308)
.++|+|++|+|||||++.++
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 68999999999999998654
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.85 E-value=0.06 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+.|.|+||+|||+|++++.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999874
No 491
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.85 E-value=0.11 Score=49.90 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|+||+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999874
No 492
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.82 E-value=0.12 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.-|.|.|+||+|||+|++++.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999874
No 493
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.82 E-value=0.12 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|.+.|+||+|||+|+.++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
No 494
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.81 E-value=0.13 Score=45.91 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999864
No 495
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.78 E-value=0.13 Score=42.67 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021764 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998876
No 496
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.74 E-value=0.13 Score=47.58 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 021764 127 EFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~ 146 (308)
-++|+|++|+|||||+..|+
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 68999999999999999775
No 497
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.74 E-value=0.12 Score=49.53 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHH--Hhc
Q 021764 128 FALVGRSNVGKSSLLNS--LVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~--l~~ 147 (308)
++|+|++|+|||||++. +.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 498
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.70 E-value=0.11 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 499
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.62 E-value=0.13 Score=45.80 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021764 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|.|.|+||+|||+|+.++...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999764
No 500
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.62 E-value=0.12 Score=49.09 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021764 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|+||+|||+|++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
Done!