Query 021767
Match_columns 308
No_of_seqs 185 out of 1318
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1575 Voltage-gated shaker-l 100.0 3.9E-55 8.3E-60 394.5 23.2 255 37-308 10-278 (336)
2 COG0667 Tas Predicted oxidored 100.0 9.4E-55 2E-59 398.3 24.2 248 39-308 1-262 (316)
3 COG0656 ARA1 Aldo/keto reducta 100.0 6.9E-54 1.5E-58 379.6 19.7 215 39-308 3-219 (280)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 4.1E-51 8.8E-56 380.2 26.1 256 38-308 12-285 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 5E-51 1.1E-55 375.6 24.8 251 41-308 1-269 (317)
6 PRK10625 tas putative aldo-ket 100.0 1.2E-50 2.6E-55 377.3 25.5 258 39-308 1-292 (346)
7 PLN02587 L-galactose dehydroge 100.0 1.6E-49 3.4E-54 365.3 23.5 245 41-308 1-249 (314)
8 KOG1577 Aldo/keto reductase fa 100.0 3.7E-50 8.1E-55 356.0 18.2 220 41-308 6-240 (300)
9 PRK10376 putative oxidoreducta 100.0 4.8E-46 1E-50 338.4 23.7 225 40-308 8-241 (290)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 9.5E-46 2.1E-50 335.5 24.5 235 41-308 1-240 (285)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4.2E-46 9E-51 334.9 21.4 206 48-308 2-207 (267)
12 COG4989 Predicted oxidoreducta 100.0 1E-46 2.2E-51 321.1 14.8 233 39-308 1-246 (298)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.3E-45 2.7E-50 334.3 19.6 233 51-308 1-236 (283)
14 PRK14863 bifunctional regulato 100.0 4.3E-45 9.2E-50 331.9 19.2 231 46-308 2-235 (292)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2E-43 4.4E-48 318.6 21.3 211 41-308 6-217 (275)
16 KOG1576 Predicted oxidoreducta 100.0 1.5E-40 3.2E-45 285.5 15.7 243 38-308 21-274 (342)
17 COG1453 Predicted oxidoreducta 100.0 2.2E-38 4.8E-43 284.0 17.0 208 39-264 1-213 (391)
18 KOG3023 Glutamate-cysteine lig 98.3 1.1E-06 2.4E-11 75.6 6.7 72 178-254 156-227 (285)
19 PF07021 MetW: Methionine bios 94.1 2.5 5.4E-05 36.0 13.5 153 77-260 5-172 (193)
20 cd03319 L-Ala-DL-Glu_epimerase 92.9 4.2 9.2E-05 37.3 14.3 157 71-259 134-291 (316)
21 PF03102 NeuB: NeuB family; I 89.7 1.9 4.2E-05 38.1 8.1 122 69-211 52-190 (241)
22 PRK08392 hypothetical protein; 89.2 14 0.0003 31.9 14.9 156 74-251 15-178 (215)
23 PRK07945 hypothetical protein; 88.7 11 0.00023 35.1 12.7 163 73-251 111-288 (335)
24 cd03315 MLE_like Muconate lact 84.6 28 0.00061 30.9 15.0 157 72-259 86-243 (265)
25 PRK08609 hypothetical protein; 84.3 30 0.00064 34.7 14.0 160 75-251 351-522 (570)
26 cd03316 MR_like Mandelate race 83.9 26 0.00057 32.5 12.9 157 71-254 139-298 (357)
27 PRK13796 GTPase YqeH; Provisio 83.6 26 0.00057 32.9 12.7 142 50-208 34-178 (365)
28 COG0635 HemN Coproporphyrinoge 83.4 9.4 0.0002 36.7 9.7 115 49-203 148-276 (416)
29 PRK09856 fructoselysine 3-epim 83.3 14 0.0003 32.9 10.3 52 238-304 94-145 (275)
30 COG1748 LYS9 Saccharopine dehy 80.7 7 0.00015 37.1 7.5 81 73-171 79-159 (389)
31 PRK04452 acetyl-CoA decarbonyl 80.5 42 0.00091 31.0 12.3 98 151-257 84-185 (319)
32 KOG0259 Tyrosine aminotransfer 80.2 55 0.0012 31.0 13.5 57 71-132 79-135 (447)
33 cd01965 Nitrogenase_MoFe_beta_ 79.3 34 0.00073 32.9 12.0 107 106-220 66-185 (428)
34 TIGR01928 menC_lowGC/arch o-su 79.2 52 0.0011 30.3 14.6 155 71-260 132-287 (324)
35 TIGR01278 DPOR_BchB light-inde 78.6 72 0.0016 31.5 14.3 107 106-220 70-191 (511)
36 PRK07328 histidinol-phosphatas 78.5 43 0.00093 29.9 11.8 170 74-251 19-225 (269)
37 PRK13361 molybdenum cofactor b 78.0 57 0.0012 30.0 15.5 141 69-231 44-195 (329)
38 TIGR00190 thiC thiamine biosyn 77.4 27 0.00058 33.2 10.1 141 71-251 75-220 (423)
39 PRK13352 thiamine biosynthesis 77.0 28 0.0006 33.2 10.1 85 138-251 139-223 (431)
40 COG2089 SpsE Sialic acid synth 77.0 53 0.0012 30.4 11.6 126 69-212 86-225 (347)
41 PRK13958 N-(5'-phosphoribosyl) 76.8 10 0.00022 32.6 6.9 66 153-228 18-84 (207)
42 TIGR00542 hxl6Piso_put hexulos 76.3 20 0.00044 32.0 9.1 52 238-304 98-149 (279)
43 PRK06740 histidinol-phosphatas 75.9 67 0.0015 29.8 14.3 104 146-251 156-288 (331)
44 PRK00164 moaA molybdenum cofac 75.5 66 0.0014 29.5 17.8 164 68-251 47-227 (331)
45 PF00682 HMGL-like: HMGL-like 74.6 57 0.0012 28.3 13.8 130 70-217 11-150 (237)
46 TIGR03569 NeuB_NnaB N-acetylne 74.2 66 0.0014 29.9 11.9 141 69-229 72-226 (329)
47 cd01974 Nitrogenase_MoFe_beta 74.2 79 0.0017 30.4 13.0 119 91-220 62-190 (435)
48 cd03174 DRE_TIM_metallolyase D 73.9 32 0.00068 30.3 9.6 105 139-253 16-134 (265)
49 PRK13209 L-xylulose 5-phosphat 73.5 52 0.0011 29.3 11.0 16 238-253 103-118 (283)
50 PF01261 AP_endonuc_2: Xylose 73.1 11 0.00024 31.5 6.2 55 237-304 74-128 (213)
51 TIGR01862 N2-ase-Ialpha nitrog 73.1 71 0.0015 30.9 12.4 115 91-220 94-220 (443)
52 cd03318 MLE Muconate Lactonizi 73.0 82 0.0018 29.4 12.8 152 73-254 144-297 (365)
53 cd01973 Nitrogenase_VFe_beta_l 72.9 96 0.0021 30.2 13.6 119 91-220 63-191 (454)
54 cd01966 Nitrogenase_NifN_1 Nit 72.7 54 0.0012 31.5 11.4 116 92-220 59-187 (417)
55 TIGR01496 DHPS dihydropteroate 72.4 71 0.0015 28.5 13.4 102 140-254 21-125 (257)
56 PRK01222 N-(5'-phosphoribosyl) 72.2 29 0.00062 29.9 8.6 74 140-228 12-86 (210)
57 PRK14476 nitrogenase molybdenu 72.1 75 0.0016 30.9 12.3 117 93-220 71-198 (455)
58 TIGR03586 PseI pseudaminic aci 71.9 78 0.0017 29.4 11.8 138 70-229 74-225 (327)
59 cd00308 enolase_like Enolase-s 71.6 26 0.00057 30.3 8.4 88 160-259 120-208 (229)
60 PRK05588 histidinol-phosphatas 71.2 73 0.0016 28.1 16.0 166 73-252 16-214 (255)
61 cd00739 DHPS DHPS subgroup of 71.2 76 0.0016 28.3 14.1 144 140-306 22-168 (257)
62 cd03321 mandelate_racemase Man 70.1 86 0.0019 29.2 12.0 152 72-253 142-294 (355)
63 KOG0059 Lipid exporter ABCA1 a 70.0 29 0.00063 36.8 9.6 73 138-212 669-767 (885)
64 PRK02910 light-independent pro 69.7 1.1E+02 0.0023 30.4 13.0 106 106-220 70-191 (519)
65 PRK13210 putative L-xylulose 5 69.6 57 0.0012 28.9 10.4 16 238-253 98-113 (284)
66 cd00423 Pterin_binding Pterin 69.5 82 0.0018 28.0 14.4 104 140-255 22-128 (258)
67 COG0135 TrpF Phosphoribosylant 69.0 64 0.0014 27.9 9.9 81 153-251 19-102 (208)
68 COG4152 ABC-type uncharacteriz 68.9 51 0.0011 29.6 9.2 73 138-212 101-199 (300)
69 PRK00208 thiG thiazole synthas 68.8 85 0.0018 27.9 14.5 106 138-252 72-180 (250)
70 TIGR02666 moaA molybdenum cofa 68.2 99 0.0021 28.4 15.7 142 69-230 42-193 (334)
71 cd03327 MR_like_2 Mandelate ra 67.3 1.1E+02 0.0023 28.4 12.5 156 71-254 120-280 (341)
72 PRK14017 galactonate dehydrata 67.1 78 0.0017 29.8 11.1 158 71-255 124-287 (382)
73 COG0422 ThiC Thiamine biosynth 66.5 1.2E+02 0.0025 28.8 11.4 137 71-251 76-221 (432)
74 CHL00076 chlB photochlorophyll 66.2 1.4E+02 0.0031 29.5 14.2 105 106-220 70-196 (513)
75 cd07944 DRE_TIM_HOA_like 4-hyd 65.3 57 0.0012 29.2 9.3 106 138-252 16-127 (266)
76 cd03325 D-galactonate_dehydrat 64.1 1.2E+02 0.0027 28.1 14.2 157 72-254 124-285 (352)
77 KOG1549 Cysteine desulfurase N 63.3 38 0.00082 32.5 7.9 154 74-252 58-216 (428)
78 TIGR00381 cdhD CO dehydrogenas 62.8 1.4E+02 0.0031 28.3 11.9 99 153-261 150-254 (389)
79 cd03323 D-glucarate_dehydratas 62.7 1.4E+02 0.0031 28.3 12.3 152 71-256 168-321 (395)
80 TIGR02370 pyl_corrinoid methyl 62.6 61 0.0013 27.5 8.6 150 71-248 10-164 (197)
81 cd03322 rpsA The starvation se 62.2 38 0.00083 31.7 7.9 83 160-254 189-272 (361)
82 PF00682 HMGL-like: HMGL-like 62.1 1E+02 0.0022 26.6 10.3 103 139-250 11-124 (237)
83 COG1121 ZnuC ABC-type Mn/Zn tr 61.4 55 0.0012 29.2 8.3 51 157-209 155-205 (254)
84 cd01977 Nitrogenase_VFe_alpha 61.4 1.5E+02 0.0033 28.2 12.8 116 91-220 64-191 (415)
85 PRK07329 hypothetical protein; 60.8 1.2E+02 0.0025 26.7 12.8 106 145-252 82-213 (246)
86 COG2102 Predicted ATPases of P 60.7 84 0.0018 27.4 8.9 102 177-305 75-177 (223)
87 TIGR01860 VNFD nitrogenase van 60.2 1.7E+02 0.0037 28.4 12.3 117 90-220 102-230 (461)
88 PRK13352 thiamine biosynthesis 60.1 20 0.00043 34.2 5.4 99 180-305 123-223 (431)
89 TIGR02534 mucon_cyclo muconate 59.5 47 0.001 31.1 8.0 72 181-257 227-299 (368)
90 COG1082 IolE Sugar phosphate i 58.6 96 0.0021 27.2 9.6 110 182-304 19-142 (274)
91 cd07943 DRE_TIM_HOA 4-hydroxy- 58.3 1.2E+02 0.0026 26.9 10.1 105 139-252 19-130 (263)
92 TIGR01284 alt_nitrog_alph nitr 58.0 1.9E+02 0.0041 28.1 12.8 115 92-220 102-228 (457)
93 PF00148 Oxidored_nitro: Nitro 58.0 81 0.0017 29.7 9.5 105 106-218 59-172 (398)
94 COG1149 MinD superfamily P-loo 57.5 30 0.00065 31.2 5.9 94 151-259 155-251 (284)
95 PLN02363 phosphoribosylanthran 56.9 41 0.00088 30.0 6.7 75 140-228 56-131 (256)
96 cd04742 NPD_FabD 2-Nitropropan 56.8 57 0.0012 31.3 8.1 72 182-255 29-103 (418)
97 CHL00200 trpA tryptophan synth 55.8 1.5E+02 0.0033 26.5 11.8 10 159-168 42-51 (263)
98 COG1140 NarY Nitrate reductase 55.2 5.7 0.00012 37.2 1.0 55 190-249 263-317 (513)
99 PRK09997 hydroxypyruvate isome 54.4 1.2E+02 0.0026 26.6 9.4 52 238-304 89-140 (258)
100 PLN02591 tryptophan synthase 53.8 1.6E+02 0.0035 26.1 11.6 11 158-168 28-38 (250)
101 COG0159 TrpA Tryptophan syntha 53.6 1.7E+02 0.0037 26.3 12.0 47 202-249 77-124 (265)
102 PLN00191 enolase 53.4 2.3E+02 0.0049 27.7 11.8 82 160-253 311-394 (457)
103 PRK05283 deoxyribose-phosphate 53.2 1.2E+02 0.0026 27.1 9.0 81 70-161 143-227 (257)
104 TIGR00126 deoC deoxyribose-pho 53.2 1.5E+02 0.0033 25.6 17.4 160 70-252 15-180 (211)
105 PRK09856 fructoselysine 3-epim 52.5 80 0.0017 27.9 8.1 61 196-258 3-71 (275)
106 PRK13210 putative L-xylulose 5 52.2 1.7E+02 0.0036 25.9 10.2 98 152-251 25-150 (284)
107 PRK12581 oxaloacetate decarbox 52.1 2.4E+02 0.0052 27.6 15.8 164 65-249 97-264 (468)
108 cd04728 ThiG Thiazole synthase 52.0 1.7E+02 0.0038 26.0 14.9 106 138-252 72-180 (248)
109 COG2896 MoaA Molybdenum cofact 52.0 2E+02 0.0043 26.7 12.1 133 69-222 42-185 (322)
110 TIGR03822 AblA_like_2 lysine-2 51.7 2E+02 0.0043 26.5 13.2 82 178-260 153-240 (321)
111 PRK15408 autoinducer 2-binding 51.7 2E+02 0.0043 26.5 12.1 91 121-223 21-111 (336)
112 PRK07535 methyltetrahydrofolat 51.4 1.8E+02 0.0039 26.0 13.8 100 140-254 23-123 (261)
113 cd06543 GH18_PF-ChiA-like PF-C 50.7 2E+02 0.0043 26.2 13.2 188 52-259 72-265 (294)
114 PF01175 Urocanase: Urocanase; 50.7 2.3E+02 0.005 28.0 11.0 129 79-227 108-257 (546)
115 smart00633 Glyco_10 Glycosyl h 50.3 1.8E+02 0.0039 25.6 9.9 112 140-254 101-225 (254)
116 PRK15072 bifunctional D-altron 50.2 1E+02 0.0022 29.4 8.7 84 160-255 232-316 (404)
117 PF13378 MR_MLE_C: Enolase C-t 50.2 19 0.00042 27.2 3.2 51 200-255 4-54 (111)
118 TIGR00262 trpA tryptophan synt 49.8 1.9E+02 0.0041 25.7 12.0 10 159-168 37-46 (256)
119 KOG0023 Alcohol dehydrogenase, 49.7 80 0.0017 29.3 7.4 153 34-250 169-324 (360)
120 TIGR02932 vnfK_nitrog V-contai 49.4 2.6E+02 0.0056 27.2 13.7 119 91-221 66-196 (457)
121 cd01821 Rhamnogalacturan_acety 48.9 1.5E+02 0.0033 24.5 9.1 98 192-304 36-149 (198)
122 PRK13347 coproporphyrinogen II 48.7 1.7E+02 0.0037 28.3 10.2 121 76-202 152-290 (453)
123 TIGR00538 hemN oxygen-independ 48.3 2.1E+02 0.0046 27.6 10.8 63 139-203 215-290 (455)
124 PRK05692 hydroxymethylglutaryl 48.2 93 0.002 28.2 7.8 99 145-253 28-139 (287)
125 PLN02746 hydroxymethylglutaryl 48.1 1.1E+02 0.0024 28.7 8.3 99 145-253 70-181 (347)
126 cd00954 NAL N-Acetylneuraminic 48.0 2.1E+02 0.0045 25.7 12.4 111 138-255 17-136 (288)
127 PF04343 DUF488: Protein of un 47.5 68 0.0015 24.8 6.0 93 206-300 2-100 (122)
128 TIGR01060 eno phosphopyruvate 47.2 2.7E+02 0.0058 26.8 12.5 81 160-252 278-362 (425)
129 PRK08446 coproporphyrinogen II 47.0 1.7E+02 0.0036 27.3 9.5 122 76-203 98-231 (350)
130 PRK09485 mmuM homocysteine met 46.2 2.3E+02 0.0051 25.8 14.8 151 71-228 44-223 (304)
131 TIGR00048 radical SAM enzyme, 46.1 2.2E+02 0.0048 26.6 10.2 94 163-258 219-333 (355)
132 PF04748 Polysacc_deac_2: Dive 46.1 1.3E+02 0.0028 26.0 8.0 123 70-217 71-202 (213)
133 TIGR01422 phosphonatase phosph 46.0 1.2E+02 0.0025 26.5 8.0 35 179-214 103-137 (253)
134 cd01981 Pchlide_reductase_B Pc 46.0 2.8E+02 0.006 26.6 15.1 30 191-220 163-195 (430)
135 TIGR01228 hutU urocanate hydra 45.9 69 0.0015 31.4 6.6 132 79-227 109-258 (545)
136 TIGR00126 deoC deoxyribose-pho 45.6 1.5E+02 0.0032 25.6 8.3 77 70-159 129-205 (211)
137 PRK09427 bifunctional indole-3 44.9 72 0.0016 31.1 6.8 65 153-229 274-339 (454)
138 PRK13478 phosphonoacetaldehyde 44.9 1.2E+02 0.0026 26.8 7.9 34 179-213 105-138 (267)
139 TIGR03597 GTPase_YqeH ribosome 44.8 2.7E+02 0.0058 26.1 12.7 142 50-208 28-172 (360)
140 COG4555 NatA ABC-type Na+ tran 44.6 1.4E+02 0.0031 26.0 7.7 72 138-211 104-201 (245)
141 TIGR03822 AblA_like_2 lysine-2 44.6 2.5E+02 0.0055 25.7 14.2 135 70-219 119-260 (321)
142 PRK05414 urocanate hydratase; 44.5 78 0.0017 31.1 6.8 132 79-227 118-267 (556)
143 TIGR03234 OH-pyruv-isom hydrox 44.5 2E+02 0.0043 25.0 9.2 52 238-304 88-139 (254)
144 cd01967 Nitrogenase_MoFe_alpha 44.3 2.6E+02 0.0057 26.3 10.6 112 93-219 66-188 (406)
145 PRK13111 trpA tryptophan synth 44.3 2.3E+02 0.005 25.2 12.3 122 146-308 26-149 (258)
146 PF02638 DUF187: Glycosyl hydr 44.3 1.2E+02 0.0026 27.8 8.0 67 238-304 74-157 (311)
147 TIGR03849 arch_ComA phosphosul 44.0 1.7E+02 0.0037 25.8 8.4 22 146-168 12-33 (237)
148 cd06300 PBP1_ABC_sugar_binding 43.9 2.1E+02 0.0046 24.6 9.7 75 140-222 13-90 (272)
149 cd01968 Nitrogenase_NifE_I Nit 43.9 2.9E+02 0.0063 26.2 12.6 117 89-220 61-187 (410)
150 PRK14459 ribosomal RNA large s 43.6 2.9E+02 0.0063 26.2 10.6 98 162-259 241-360 (373)
151 PF00290 Trp_syntA: Tryptophan 43.4 91 0.002 27.9 6.8 24 140-164 22-45 (259)
152 PTZ00081 enolase; Provisional 43.4 2E+02 0.0044 27.8 9.6 97 139-252 281-381 (439)
153 PRK00507 deoxyribose-phosphate 42.3 1.5E+02 0.0032 25.8 7.8 76 70-158 133-208 (221)
154 PF06506 PrpR_N: Propionate ca 42.2 57 0.0012 27.1 5.1 68 176-252 62-130 (176)
155 PRK12331 oxaloacetate decarbox 42.1 1.4E+02 0.0031 29.0 8.4 102 145-253 28-142 (448)
156 cd03324 rTSbeta_L-fuconate_deh 42.1 3.2E+02 0.0069 26.2 14.0 153 71-254 196-352 (415)
157 PRK06294 coproporphyrinogen II 42.1 1.9E+02 0.0042 27.1 9.2 122 76-203 103-243 (370)
158 COG0329 DapA Dihydrodipicolina 41.5 2.8E+02 0.006 25.3 11.4 117 139-259 22-143 (299)
159 PRK12323 DNA polymerase III su 41.4 1.6E+02 0.0035 30.2 8.8 71 139-214 104-176 (700)
160 cd02070 corrinoid_protein_B12- 41.3 2.2E+02 0.0048 24.1 10.0 150 71-248 9-162 (201)
161 cd02932 OYE_YqiM_FMN Old yello 41.2 2.9E+02 0.0063 25.4 13.0 85 123-211 219-310 (336)
162 PRK09058 coproporphyrinogen II 41.1 3.4E+02 0.0074 26.2 13.0 26 140-166 228-253 (449)
163 cd01321 ADGF Adenosine deamina 40.6 3.1E+02 0.0066 25.6 10.6 16 237-252 236-251 (345)
164 PRK13803 bifunctional phosphor 40.2 1.7E+02 0.0036 29.7 8.9 76 140-228 12-88 (610)
165 PRK09284 thiamine biosynthesis 40.2 1.8E+02 0.0039 29.0 8.6 120 138-302 291-410 (607)
166 cd00959 DeoC 2-deoxyribose-5-p 40.1 2.3E+02 0.005 24.0 16.7 159 70-252 14-179 (203)
167 TIGR01290 nifB nitrogenase cof 40.1 3.6E+02 0.0077 26.1 13.8 111 138-260 59-200 (442)
168 TIGR03679 arCOG00187 arCOG0018 39.5 2.5E+02 0.0054 24.2 13.7 131 146-305 46-177 (218)
169 PRK09282 pyruvate carboxylase 39.4 1.2E+02 0.0026 30.6 7.7 97 148-251 31-140 (592)
170 COG3693 XynA Beta-1,4-xylanase 39.0 3.2E+02 0.007 25.4 11.3 88 140-230 169-263 (345)
171 PLN02444 HMP-P synthase 38.9 1.9E+02 0.0041 28.9 8.5 87 139-260 297-383 (642)
172 COG4130 Predicted sugar epimer 38.8 1.8E+02 0.0039 25.5 7.4 80 203-303 51-137 (272)
173 PF02679 ComA: (2R)-phospho-3- 38.6 76 0.0016 28.2 5.4 102 145-252 24-131 (244)
174 PLN02389 biotin synthase 38.4 3.5E+02 0.0076 25.6 14.0 131 69-216 115-254 (379)
175 TIGR01502 B_methylAsp_ase meth 38.4 1.8E+02 0.0038 27.9 8.3 72 180-256 280-357 (408)
176 KOG2792 Putative cytochrome C 38.4 95 0.0021 27.8 5.9 75 193-302 143-224 (280)
177 PF10566 Glyco_hydro_97: Glyco 38.2 91 0.002 28.2 5.9 57 202-258 30-97 (273)
178 PRK05660 HemN family oxidoredu 38.2 2.9E+02 0.0063 26.0 9.7 93 71-202 141-242 (378)
179 COG1131 CcmA ABC-type multidru 38.0 98 0.0021 28.1 6.3 63 144-209 141-203 (293)
180 cd01948 EAL EAL domain. This d 37.9 2.5E+02 0.0054 23.7 9.5 117 124-252 82-207 (240)
181 PRK09545 znuA high-affinity zi 37.8 3E+02 0.0066 25.1 9.6 52 202-260 237-288 (311)
182 cd03317 NAAAR N-acylamino acid 37.6 1.5E+02 0.0032 27.5 7.6 151 73-258 139-290 (354)
183 KOG0256 1-aminocyclopropane-1- 37.6 1.4E+02 0.003 28.7 7.2 67 159-225 192-267 (471)
184 PLN02540 methylenetetrahydrofo 37.4 4.4E+02 0.0096 26.5 15.5 156 73-249 15-197 (565)
185 PRK07003 DNA polymerase III su 37.4 2E+02 0.0043 30.2 8.7 96 140-249 100-197 (830)
186 COG2200 Rtn c-di-GMP phosphodi 37.3 2.9E+02 0.0063 24.3 10.0 133 106-253 69-212 (256)
187 COG4992 ArgD Ornithine/acetylo 37.1 1.6E+02 0.0035 28.2 7.6 170 84-302 39-219 (404)
188 PRK14463 ribosomal RNA large s 37.0 3E+02 0.0064 25.8 9.4 86 178-265 234-338 (349)
189 TIGR01927 menC_gamma/gm+ o-suc 36.7 2.2E+02 0.0048 25.9 8.5 74 182-260 196-270 (307)
190 KOG1321 Protoheme ferro-lyase 36.6 2.3E+02 0.005 26.3 8.2 60 182-244 144-210 (395)
191 TIGR02668 moaA_archaeal probab 36.4 3.2E+02 0.0069 24.5 14.3 158 69-247 39-213 (302)
192 TIGR02109 PQQ_syn_pqqE coenzym 36.3 3.5E+02 0.0076 25.0 12.0 13 180-192 70-82 (358)
193 PF01619 Pro_dh: Proline dehyd 36.2 1.4E+02 0.003 27.4 7.0 169 73-258 92-284 (313)
194 cd00740 MeTr MeTr subgroup of 36.0 3.1E+02 0.0067 24.3 10.1 104 140-255 24-127 (252)
195 PRK13361 molybdenum cofactor b 35.9 3.5E+02 0.0075 24.8 13.4 21 238-258 174-196 (329)
196 PRK09989 hypothetical protein; 35.9 3E+02 0.0065 24.0 9.6 14 238-251 89-102 (258)
197 TIGR00735 hisF imidazoleglycer 35.7 3.1E+02 0.0067 24.1 12.7 91 150-250 162-253 (254)
198 TIGR01093 aroD 3-dehydroquinat 35.6 2.9E+02 0.0063 23.8 11.8 102 139-254 75-186 (228)
199 TIGR00190 thiC thiamine biosyn 35.6 54 0.0012 31.2 4.1 86 197-305 133-220 (423)
200 cd04740 DHOD_1B_like Dihydroor 35.6 3.3E+02 0.0071 24.4 12.7 83 71-163 100-186 (296)
201 PF06415 iPGM_N: BPG-independe 35.5 2.3E+02 0.005 24.7 7.9 73 180-252 16-99 (223)
202 TIGR01861 ANFD nitrogenase iro 35.4 4.6E+02 0.0099 26.0 12.3 116 91-220 104-231 (513)
203 PRK00912 ribonuclease P protei 35.3 3E+02 0.0065 23.9 11.6 145 73-252 16-172 (237)
204 cd00019 AP2Ec AP endonuclease 35.1 3.2E+02 0.0069 24.1 10.3 17 150-166 17-33 (279)
205 COG2987 HutU Urocanate hydrata 34.9 1E+02 0.0023 29.8 5.9 110 101-227 146-267 (561)
206 cd00952 CHBPH_aldolase Trans-o 34.9 3.6E+02 0.0077 24.6 10.3 109 138-255 25-143 (309)
207 cd06598 GH31_transferase_CtsZ 34.5 1.1E+02 0.0025 28.0 6.2 53 202-254 22-90 (317)
208 PRK14477 bifunctional nitrogen 34.5 2.2E+02 0.0048 30.5 9.0 115 93-220 550-674 (917)
209 COG4130 Predicted sugar epimer 34.4 2.4E+02 0.0052 24.7 7.5 17 146-162 20-36 (272)
210 cd01017 AdcA Metal binding pro 34.3 3E+02 0.0065 24.5 8.9 52 201-259 204-255 (282)
211 cd03319 L-Ala-DL-Glu_epimerase 34.3 3.3E+02 0.0072 24.6 9.3 96 140-252 134-233 (316)
212 TIGR01285 nifN nitrogenase mol 34.1 1.7E+02 0.0038 28.1 7.6 117 93-220 70-197 (432)
213 PRK12268 methionyl-tRNA synthe 34.0 2.2E+02 0.0048 28.3 8.6 98 89-194 6-119 (556)
214 PF11020 DUF2610: Domain of un 33.9 30 0.00065 24.9 1.7 26 283-308 47-72 (82)
215 cd00950 DHDPS Dihydrodipicolin 33.9 3.4E+02 0.0074 24.1 10.0 111 138-255 17-134 (284)
216 PRK14834 undecaprenyl pyrophos 33.9 3.4E+02 0.0074 24.1 8.8 71 140-212 43-123 (249)
217 PF01402 RHH_1: Ribbon-helix-h 33.9 30 0.00065 20.7 1.6 20 288-307 9-28 (39)
218 cd07939 DRE_TIM_NifV Streptomy 33.8 3.3E+02 0.0072 24.0 12.6 130 137-308 15-159 (259)
219 PF07287 DUF1446: Protein of u 33.6 2.1E+02 0.0046 27.0 7.8 15 238-252 62-76 (362)
220 PF01118 Semialdhyde_dh: Semia 33.5 55 0.0012 25.2 3.4 28 71-98 75-102 (121)
221 cd06593 GH31_xylosidase_YicI Y 33.4 1.3E+02 0.0028 27.3 6.4 53 201-253 21-85 (308)
222 PF10668 Phage_terminase: Phag 33.4 19 0.00042 24.5 0.7 16 292-307 24-39 (60)
223 TIGR03821 AblA_like_1 lysine-2 33.4 3.9E+02 0.0084 24.6 12.7 80 180-260 161-246 (321)
224 PF00697 PRAI: N-(5'phosphorib 33.3 1.9E+02 0.0042 24.4 7.0 66 152-229 15-81 (197)
225 TIGR01428 HAD_type_II 2-haloal 32.9 2.5E+02 0.0055 23.1 7.7 33 179-212 96-128 (198)
226 TIGR02313 HpaI-NOT-DapA 2,4-di 32.8 3.7E+02 0.0081 24.2 10.7 111 138-255 17-135 (294)
227 PF13407 Peripla_BP_4: Peripla 32.8 1.9E+02 0.0041 24.8 7.2 74 141-223 13-86 (257)
228 PF13380 CoA_binding_2: CoA bi 32.8 96 0.0021 23.8 4.7 54 191-252 54-107 (116)
229 PRK14462 ribosomal RNA large s 32.7 4.2E+02 0.0092 24.9 10.5 80 178-259 247-339 (356)
230 PF14871 GHL6: Hypothetical gl 32.3 37 0.0008 27.0 2.3 21 237-257 47-67 (132)
231 cd06595 GH31_xylosidase_XylS-l 32.2 1.4E+02 0.0031 26.9 6.4 55 200-254 21-94 (292)
232 PRK00730 rnpA ribonuclease P; 31.7 2E+02 0.0043 23.1 6.3 63 122-190 46-110 (138)
233 PRK05628 coproporphyrinogen II 31.7 4.3E+02 0.0094 24.7 11.0 27 139-166 172-198 (375)
234 cd02069 methionine_synthase_B1 31.7 3.4E+02 0.0073 23.4 9.2 150 71-248 13-168 (213)
235 PRK14457 ribosomal RNA large s 31.5 4.4E+02 0.0094 24.6 14.8 143 107-258 165-330 (345)
236 COG2884 FtsE Predicted ATPase 31.5 3.4E+02 0.0075 23.4 8.5 69 139-209 109-203 (223)
237 PRK13015 3-dehydroquinate dehy 31.5 2.3E+02 0.005 23.0 6.6 79 139-232 26-106 (146)
238 cd06594 GH31_glucosidase_YihQ 31.5 1.2E+02 0.0026 27.9 5.8 52 202-253 21-90 (317)
239 cd03320 OSBS o-Succinylbenzoat 31.3 2.1E+02 0.0046 25.2 7.3 73 181-259 167-239 (263)
240 PLN02489 homocysteine S-methyl 31.3 4.3E+02 0.0093 24.5 15.2 173 71-253 53-273 (335)
241 TIGR02814 pfaD_fam PfaD family 31.3 2.5E+02 0.0054 27.3 8.0 71 182-254 34-107 (444)
242 cd03326 MR_like_1 Mandelate ra 31.3 4.6E+02 0.0099 24.8 12.7 151 71-249 160-313 (385)
243 PF00762 Ferrochelatase: Ferro 31.2 3.5E+02 0.0077 24.8 8.8 89 140-256 205-297 (316)
244 PRK01313 rnpA ribonuclease P; 31.2 2.5E+02 0.0054 22.2 6.8 63 122-189 47-113 (129)
245 PF05570 DUF765: Circovirus pr 30.7 36 0.00078 18.8 1.3 14 3-16 1-14 (29)
246 COG2159 Predicted metal-depend 30.5 4.1E+02 0.009 24.0 10.4 101 152-256 55-166 (293)
247 cd01828 sialate_O-acetylestera 30.4 2.8E+02 0.0061 22.1 8.3 95 193-304 24-127 (169)
248 PF01964 ThiC: ThiC family; I 30.4 52 0.0011 31.3 3.2 138 71-252 74-220 (420)
249 PF13289 SIR2_2: SIR2-like dom 30.4 1.9E+02 0.0041 22.3 6.2 67 179-251 75-143 (143)
250 PRK06256 biotin synthase; Vali 30.3 3.9E+02 0.0085 24.4 9.1 130 69-217 90-229 (336)
251 cd06592 GH31_glucosidase_KIAA1 30.1 1.7E+02 0.0036 26.7 6.5 52 202-253 28-89 (303)
252 PRK15108 biotin synthase; Prov 30.1 3.9E+02 0.0084 24.9 9.0 66 139-210 76-143 (345)
253 cd00466 DHQase_II Dehydroquina 30.0 2E+02 0.0043 23.2 6.0 79 139-232 24-104 (140)
254 PRK04527 argininosuccinate syn 30.0 4.5E+02 0.0098 25.2 9.4 18 286-303 237-254 (400)
255 PRK06424 transcription factor; 29.9 56 0.0012 26.5 2.9 20 238-257 24-46 (144)
256 PRK01060 endonuclease IV; Prov 29.6 2.6E+02 0.0057 24.6 7.7 54 195-250 3-63 (281)
257 cd07937 DRE_TIM_PC_TC_5S Pyruv 29.6 2.8E+02 0.0062 24.8 7.8 16 148-163 26-41 (275)
258 cd06591 GH31_xylosidase_XylS X 29.5 1.6E+02 0.0034 27.1 6.2 53 202-254 22-86 (319)
259 PRK00077 eno enolase; Provisio 29.5 5.2E+02 0.011 24.8 13.1 96 140-252 262-361 (425)
260 cd06597 GH31_transferase_CtsY 29.4 1.6E+02 0.0035 27.4 6.3 52 202-253 22-104 (340)
261 PF01297 TroA: Periplasmic sol 29.4 2E+02 0.0043 25.1 6.8 51 201-258 183-233 (256)
262 TIGR00655 PurU formyltetrahydr 29.2 4.3E+02 0.0093 23.8 13.4 144 74-252 13-165 (280)
263 PRK03031 rnpA ribonuclease P; 29.2 2.7E+02 0.0059 21.5 6.7 65 122-190 47-114 (122)
264 PRK13537 nodulation ABC transp 29.2 4.3E+02 0.0093 24.0 9.1 51 158-210 155-205 (306)
265 cd03329 MR_like_4 Mandelate ra 29.0 4.8E+02 0.01 24.3 15.3 154 71-253 143-298 (368)
266 KOG0369 Pyruvate carboxylase [ 28.8 3.9E+02 0.0084 27.6 8.9 146 73-259 43-196 (1176)
267 cd07943 DRE_TIM_HOA 4-hydroxy- 28.6 4.1E+02 0.0089 23.4 16.4 24 70-93 19-42 (263)
268 COG1751 Uncharacterized conser 28.5 2.1E+02 0.0045 23.6 5.9 74 71-158 12-85 (186)
269 PRK14456 ribosomal RNA large s 28.4 4.4E+02 0.0095 24.9 9.1 80 177-258 261-353 (368)
270 PRK01018 50S ribosomal protein 28.4 2.2E+02 0.0047 21.3 5.8 61 180-253 4-64 (99)
271 cd08561 GDPD_cytoplasmic_ScUgp 28.4 3.2E+02 0.007 23.7 7.9 72 184-255 125-220 (249)
272 COG2069 CdhD CO dehydrogenase/ 28.4 4.7E+02 0.01 24.1 8.7 97 152-258 160-262 (403)
273 PRK10826 2-deoxyglucose-6-phos 28.3 2.1E+02 0.0045 24.3 6.5 33 179-212 96-128 (222)
274 PRK03620 5-dehydro-4-deoxygluc 28.3 4.5E+02 0.0098 23.8 10.7 109 138-254 24-139 (303)
275 PRK07379 coproporphyrinogen II 28.3 5.2E+02 0.011 24.5 10.0 121 77-203 116-255 (400)
276 PRK13505 formate--tetrahydrofo 28.1 1.4E+02 0.003 29.9 5.7 55 204-259 359-413 (557)
277 PRK07764 DNA polymerase III su 28.1 3.4E+02 0.0074 28.7 9.0 97 140-250 101-199 (824)
278 PLN03228 methylthioalkylmalate 27.9 6.1E+02 0.013 25.1 11.1 130 145-308 108-259 (503)
279 CHL00162 thiG thiamin biosynth 27.9 4.5E+02 0.0097 23.6 8.7 107 138-253 80-195 (267)
280 cd03313 enolase Enolase: Enola 27.6 5.5E+02 0.012 24.5 10.1 81 160-252 277-361 (408)
281 TIGR02026 BchE magnesium-proto 27.5 5.9E+02 0.013 24.9 12.8 109 140-256 223-345 (497)
282 COG1058 CinA Predicted nucleot 27.5 1.2E+02 0.0025 27.2 4.8 65 73-148 21-86 (255)
283 COG2022 ThiG Uncharacterized e 27.4 4.4E+02 0.0095 23.4 9.1 108 138-254 79-189 (262)
284 COG4464 CapC Capsular polysacc 27.4 2.6E+02 0.0056 24.5 6.6 29 70-98 17-45 (254)
285 cd07948 DRE_TIM_HCS Saccharomy 27.3 4.5E+02 0.0097 23.4 9.7 94 145-253 24-131 (262)
286 PRK13753 dihydropteroate synth 27.3 4.7E+02 0.01 23.7 14.2 103 140-256 23-128 (279)
287 PF00701 DHDPS: Dihydrodipicol 27.2 4.5E+02 0.0098 23.4 10.9 111 137-255 17-135 (289)
288 PRK12558 glutamyl-tRNA synthet 27.2 2.7E+02 0.0059 27.0 7.6 68 139-217 48-115 (445)
289 PRK10551 phage resistance prot 27.0 4.4E+02 0.0094 26.1 9.2 100 142-252 364-472 (518)
290 TIGR01182 eda Entner-Doudoroff 26.8 3E+02 0.0066 23.6 7.1 88 140-252 18-106 (204)
291 PRK02901 O-succinylbenzoate sy 26.7 4.8E+02 0.01 24.1 8.9 71 181-259 173-244 (327)
292 TIGR00853 pts-lac PTS system, 26.6 1E+02 0.0022 22.9 3.7 28 237-264 65-92 (95)
293 PRK13790 phosphoribosylamine-- 26.5 69 0.0015 30.2 3.4 19 238-256 42-60 (379)
294 PRK00507 deoxyribose-phosphate 26.5 4.3E+02 0.0093 22.9 14.5 133 70-226 19-156 (221)
295 TIGR00683 nanA N-acetylneurami 26.5 4.8E+02 0.01 23.5 10.8 111 138-256 17-137 (290)
296 PRK02399 hypothetical protein; 26.4 2E+02 0.0043 27.6 6.3 42 146-196 199-240 (406)
297 PF01081 Aldolase: KDPG and KH 26.2 3.1E+02 0.0068 23.3 7.0 59 181-252 47-106 (196)
298 cd01976 Nitrogenase_MoFe_alpha 26.1 5.9E+02 0.013 24.4 12.9 115 91-220 75-201 (421)
299 COG3033 TnaA Tryptophanase [Am 26.0 1.6E+02 0.0034 28.0 5.4 52 200-251 168-223 (471)
300 PRK02842 light-independent pro 25.9 4.7E+02 0.01 25.0 9.1 106 106-220 81-194 (427)
301 PRK14461 ribosomal RNA large s 25.9 2.1E+02 0.0045 27.1 6.3 140 106-259 184-353 (371)
302 PRK04147 N-acetylneuraminate l 25.8 4.9E+02 0.011 23.4 11.1 110 138-254 20-137 (293)
303 PRK06015 keto-hydroxyglutarate 25.7 2.9E+02 0.0063 23.7 6.8 87 140-251 14-101 (201)
304 cd03321 mandelate_racemase Man 25.7 5.4E+02 0.012 23.8 10.7 13 291-303 278-290 (355)
305 cd03314 MAL Methylaspartate am 25.6 2.6E+02 0.0056 26.4 7.0 69 181-254 245-319 (369)
306 cd02742 GH20_hexosaminidase Be 25.6 1.1E+02 0.0024 27.9 4.4 16 237-252 75-90 (303)
307 PLN02880 tyrosine decarboxylas 25.6 2.1E+02 0.0045 28.1 6.6 76 144-219 190-271 (490)
308 PRK09061 D-glutamate deacylase 25.5 6.6E+02 0.014 24.7 11.6 117 74-202 170-286 (509)
309 cd06602 GH31_MGAM_SI_GAA This 25.4 2E+02 0.0043 26.7 6.2 53 202-254 22-86 (339)
310 TIGR01917 gly_red_sel_B glycin 25.4 3.3E+02 0.0072 26.3 7.6 73 181-255 289-372 (431)
311 PF09370 TIM-br_sig_trns: TIM- 25.3 1E+02 0.0022 27.7 4.0 52 142-203 66-117 (268)
312 PRK03459 rnpA ribonuclease P; 25.3 3.2E+02 0.007 21.2 6.5 63 122-189 48-113 (122)
313 TIGR01283 nifE nitrogenase mol 25.2 6.3E+02 0.014 24.4 12.8 115 91-220 98-226 (456)
314 TIGR00238 KamA family protein. 25.1 5.5E+02 0.012 23.7 11.9 23 238-260 241-263 (331)
315 PRK08776 cystathionine gamma-s 25.1 3.5E+02 0.0075 25.7 7.9 16 205-220 163-178 (405)
316 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.1 5E+02 0.011 23.2 16.5 25 70-94 18-42 (275)
317 cd07945 DRE_TIM_CMS Leptospira 25.0 5.1E+02 0.011 23.3 15.5 118 140-264 109-233 (280)
318 PRK13602 putative ribosomal pr 24.9 2.2E+02 0.0047 20.4 5.1 15 238-252 44-58 (82)
319 TIGR01188 drrA daunorubicin re 24.9 5.1E+02 0.011 23.3 9.0 49 159-209 142-190 (302)
320 COG1104 NifS Cysteine sulfinat 24.9 1.8E+02 0.0039 27.7 5.7 25 178-202 102-127 (386)
321 KOG0053 Cystathionine beta-lya 24.9 2.3E+02 0.0049 27.2 6.4 79 180-263 129-208 (409)
322 TIGR03699 mena_SCO4550 menaqui 24.8 5.5E+02 0.012 23.6 10.2 133 69-217 71-223 (340)
323 PLN02444 HMP-P synthase 24.8 85 0.0018 31.3 3.6 95 180-304 283-377 (642)
324 PRK09490 metH B12-dependent me 24.8 8.4E+02 0.018 27.2 11.4 91 154-255 395-488 (1229)
325 COG3215 PilZ Tfp pilus assembl 24.7 1.9E+02 0.0042 22.0 4.7 69 74-153 21-105 (117)
326 PRK14455 ribosomal RNA large s 24.6 4.9E+02 0.011 24.4 8.6 81 177-259 245-338 (356)
327 TIGR03820 lys_2_3_AblA lysine- 24.4 6.5E+02 0.014 24.3 13.3 164 70-250 138-317 (417)
328 PRK08084 DNA replication initi 24.4 4.6E+02 0.01 22.6 8.4 49 159-207 97-146 (235)
329 PRK05395 3-dehydroquinate dehy 24.3 2.5E+02 0.0054 22.8 5.7 80 139-233 26-107 (146)
330 cd00668 Ile_Leu_Val_MetRS_core 24.3 1.5E+02 0.0033 26.9 5.2 49 141-195 81-131 (312)
331 cd06600 GH31_MGAM-like This fa 24.3 2E+02 0.0044 26.3 6.0 52 202-253 22-83 (317)
332 TIGR00398 metG methionyl-tRNA 24.2 4E+02 0.0086 26.3 8.4 47 142-194 68-114 (530)
333 cd06604 GH31_glucosidase_II_Ma 24.2 2.1E+02 0.0045 26.5 6.1 52 202-253 22-83 (339)
334 TIGR01088 aroQ 3-dehydroquinat 24.1 2.9E+02 0.0063 22.3 6.0 79 139-232 24-104 (141)
335 smart00052 EAL Putative diguan 24.0 4.3E+02 0.0094 22.1 8.9 101 142-252 99-208 (241)
336 cd06603 GH31_GANC_GANAB_alpha 23.7 1.8E+02 0.0039 26.9 5.6 52 202-253 22-83 (339)
337 PF05378 Hydant_A_N: Hydantoin 23.7 1.6E+02 0.0035 24.5 4.7 27 173-200 129-155 (176)
338 PRK00499 rnpA ribonuclease P; 23.5 3.4E+02 0.0073 20.7 6.7 64 122-190 38-104 (114)
339 COG1122 CbiO ABC-type cobalt t 23.3 5E+02 0.011 22.7 8.0 70 138-208 109-204 (235)
340 TIGR00674 dapA dihydrodipicoli 23.3 5.4E+02 0.012 23.0 10.2 112 138-256 15-133 (285)
341 COG2949 SanA Uncharacterized m 23.3 3.6E+02 0.0079 23.4 6.7 98 142-254 76-180 (235)
342 cd00885 cinA Competence-damage 23.0 1.8E+02 0.004 24.0 5.0 46 74-130 20-65 (170)
343 cd00814 MetRS_core catalytic c 23.0 1.6E+02 0.0034 27.0 5.0 47 141-193 68-114 (319)
344 PRK08195 4-hyroxy-2-oxovalerat 23.0 6.1E+02 0.013 23.5 18.4 24 70-93 22-45 (337)
345 TIGR00618 sbcc exonuclease Sbc 22.9 1.7E+02 0.0036 31.8 5.8 49 159-209 978-1026(1042)
346 PRK15063 isocitrate lyase; Pro 22.9 4E+02 0.0086 25.8 7.6 73 143-222 263-344 (428)
347 TIGR02329 propionate_PrpR prop 22.8 4.9E+02 0.011 25.9 8.7 65 179-252 85-150 (526)
348 COG0419 SbcC ATPase involved i 22.8 2E+02 0.0043 30.7 6.3 58 147-206 827-886 (908)
349 PRK14832 undecaprenyl pyrophos 22.5 5.6E+02 0.012 22.9 9.4 73 140-213 47-128 (253)
350 cd01834 SGNH_hydrolase_like_2 22.5 2.1E+02 0.0045 23.1 5.3 101 193-304 36-150 (191)
351 PF00155 Aminotran_1_2: Aminot 22.5 3.5E+02 0.0075 24.6 7.3 53 200-252 129-186 (363)
352 cd06589 GH31 The enzymes of gl 22.5 2.7E+02 0.0059 24.6 6.3 54 201-254 21-86 (265)
353 PLN02590 probable tyrosine dec 22.5 3.4E+02 0.0073 27.1 7.5 76 143-218 237-318 (539)
354 cd08568 GDPD_TmGDE_like Glycer 22.4 2.2E+02 0.0047 24.4 5.6 20 72-91 13-32 (226)
355 PF01120 Alpha_L_fucos: Alpha- 22.3 1.6E+02 0.0034 27.4 4.9 34 224-257 125-161 (346)
356 cd00537 MTHFR Methylenetetrahy 22.3 4.3E+02 0.0092 23.4 7.6 104 138-249 69-188 (274)
357 PRK10528 multifunctional acyl- 22.2 4.5E+02 0.0098 21.7 9.9 66 187-252 40-113 (191)
358 PF05378 Hydant_A_N: Hydantoin 22.1 2.9E+02 0.0064 22.9 6.1 47 200-247 130-176 (176)
359 PRK12999 pyruvate carboxylase; 22.1 1.1E+03 0.024 26.1 14.1 72 141-214 653-730 (1146)
360 PRK06361 hypothetical protein; 22.0 4.8E+02 0.01 21.9 15.1 183 74-307 11-196 (212)
361 PRK11359 cyclic-di-GMP phospho 21.9 7.4E+02 0.016 25.4 10.3 68 178-253 678-754 (799)
362 TIGR00676 fadh2 5,10-methylene 21.8 5.7E+02 0.012 22.7 14.9 157 73-250 15-186 (272)
363 COG0274 DeoC Deoxyribose-phosp 21.8 5.5E+02 0.012 22.5 8.2 80 68-164 19-98 (228)
364 PRK04390 rnpA ribonuclease P; 21.7 3.8E+02 0.0083 20.7 7.0 64 122-189 44-109 (120)
365 PRK05458 guanosine 5'-monophos 21.7 6.5E+02 0.014 23.3 10.0 117 121-252 20-145 (326)
366 PRK10060 RNase II stability mo 21.7 7.6E+02 0.016 25.1 10.1 68 178-253 541-617 (663)
367 PRK03170 dihydrodipicolinate s 21.4 5.9E+02 0.013 22.7 11.4 110 138-255 18-135 (292)
368 PRK07428 nicotinate-nucleotide 21.4 5.7E+02 0.012 23.2 8.2 21 193-213 217-237 (288)
369 smart00481 POLIIIAc DNA polyme 21.4 1.1E+02 0.0025 20.5 2.9 15 238-252 19-33 (67)
370 cd01320 ADA Adenosine deaminas 21.4 6.1E+02 0.013 22.9 11.7 113 140-253 67-192 (325)
371 PRK10558 alpha-dehydro-beta-de 21.3 3E+02 0.0066 24.4 6.3 70 183-257 9-79 (256)
372 COG4108 PrfC Peptide chain rel 21.3 6E+02 0.013 24.9 8.4 82 167-252 20-138 (528)
373 PF01055 Glyco_hydro_31: Glyco 21.3 2.5E+02 0.0054 26.8 6.2 53 202-254 41-103 (441)
374 cd02810 DHOD_DHPD_FMN Dihydroo 21.3 4.9E+02 0.011 23.1 7.9 83 71-161 109-194 (289)
375 PRK05718 keto-hydroxyglutarate 21.2 5.4E+02 0.012 22.2 7.7 52 70-132 24-75 (212)
376 cd04734 OYE_like_3_FMN Old yel 21.2 6.6E+02 0.014 23.2 10.3 105 78-200 146-250 (343)
377 cd07940 DRE_TIM_IPMS 2-isoprop 21.2 5.8E+02 0.013 22.5 17.2 85 177-264 142-231 (268)
378 cd02933 OYE_like_FMN Old yello 21.1 6.6E+02 0.014 23.2 12.6 30 69-98 141-177 (338)
379 PLN02428 lipoic acid synthase 21.1 6.9E+02 0.015 23.4 14.4 168 69-258 129-325 (349)
380 cd00405 PRAI Phosphoribosylant 21.0 5E+02 0.011 21.7 10.2 41 159-206 73-113 (203)
381 PF07894 DUF1669: Protein of u 21.0 6.4E+02 0.014 22.9 8.6 83 156-250 117-200 (284)
382 cd04501 SGNH_hydrolase_like_4 21.0 4.5E+02 0.0097 21.1 9.9 103 191-305 32-142 (183)
383 PRK13644 cbiO cobalt transport 20.9 5.9E+02 0.013 22.5 8.2 47 158-206 153-199 (274)
384 PRK00133 metG methionyl-tRNA s 20.8 7.7E+02 0.017 25.2 9.9 98 89-194 5-117 (673)
385 COG4451 RbcS Ribulose bisphosp 20.7 4.2E+02 0.0091 20.8 6.3 63 138-200 18-92 (127)
386 TIGR03278 methan_mark_10 putat 20.6 7.5E+02 0.016 23.7 11.3 15 287-301 230-244 (404)
387 cd02067 B12-binding B12 bindin 20.5 3.2E+02 0.007 20.5 5.7 13 189-201 47-59 (119)
388 cd06601 GH31_lyase_GLase GLase 20.4 3E+02 0.0064 25.5 6.3 51 202-252 22-82 (332)
389 PRK12410 glutamylglutaminyl-tR 20.4 5.3E+02 0.012 25.0 8.1 63 140-213 46-108 (433)
390 cd07938 DRE_TIM_HMGL 3-hydroxy 20.4 3.3E+02 0.0071 24.4 6.4 98 145-253 22-133 (274)
391 PF00809 Pterin_bind: Pterin b 20.3 5.2E+02 0.011 22.0 7.4 48 153-200 157-205 (210)
392 TIGR00035 asp_race aspartate r 20.2 5.6E+02 0.012 22.0 8.3 66 140-206 15-89 (229)
393 PRK12267 methionyl-tRNA synthe 20.1 4.9E+02 0.011 26.5 8.3 100 89-196 7-121 (648)
394 TIGR03522 GldA_ABC_ATP gliding 20.1 5.7E+02 0.012 23.0 8.0 50 158-210 150-199 (301)
395 PRK00396 rnpA ribonuclease P; 20.0 4.5E+02 0.0096 20.8 6.5 63 122-189 46-111 (130)
396 PLN02591 tryptophan synthase 20.0 6.2E+02 0.013 22.4 14.1 29 71-99 14-42 (250)
397 COG2861 Uncharacterized protei 20.0 1.2E+02 0.0027 26.8 3.4 19 285-303 191-209 (250)
No 1
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=3.9e-55 Score=394.51 Aligned_cols=255 Identities=36% Similarity=0.581 Sum_probs=222.5
Q ss_pred CCcceeecC--CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHh
Q 021767 37 WPWEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFIS 114 (308)
Q Consensus 37 ~~m~~~~lg--g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~ 114 (308)
..|+++++| |++||++|||||.+ ..|+.. .+++++++++++|+++|+|+||||++||+ |.+|+++|++|+
T Consensus 10 ~~~~~~~lg~~gl~Vs~lglG~m~~---~~~~~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~----~~~E~llg~~i~ 81 (336)
T KOG1575|consen 10 LGMLRRKLGNSGLKVSPLGLGCMGW---TTFGGQ-IDKEEAFELLDHAYEAGINFFDTAEVYGN----GQSEELLGEFIK 81 (336)
T ss_pred hcceeeeccCCCceecceeecceee---eccccC-CCHHHHHHHHHHHHHcCCCEEehhhhcCC----cccHHHHHHHHH
Confidence 458999999 89999999999843 345555 78899999999999999999999999998 999999999999
Q ss_pred hCCCCCCCCCCEEEEeccCCCC-----CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 021767 115 EIPGQKQVQNNIVIATKFAAYP-----WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE 189 (308)
Q Consensus 115 ~~~~~~~~R~~v~i~tK~~~~~-----~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~ 189 (308)
+++ ..|++|+|+||++... .+.+..++...++.||++|+++||||||+||+|.. .|++ +++++|.++++
T Consensus 82 ~~~---~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~-~pie--e~m~aL~~lve 155 (336)
T KOG1575|consen 82 SRG---WRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPM-VPIE--ETMRALTDLVE 155 (336)
T ss_pred hcC---CcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCC-CCHH--HHHHHHHHHHh
Confidence 965 5899999999998643 55688999999999999999999999999998754 6765 49999999999
Q ss_pred cCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCC-
Q 021767 190 KGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPS- 268 (308)
Q Consensus 190 ~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~- 268 (308)
+||||+||+|+++++++.++...+. +|+.++|++||+++|+.++.+++++|++.||++++||||++|+|+++|...
T Consensus 156 ~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e 232 (336)
T KOG1575|consen 156 QGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGE 232 (336)
T ss_pred cCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccc
Confidence 9999999999999999999988743 669999999999999988878999999999999999999999999998654
Q ss_pred CCCCCchhhhhhccc------cChHHHHHHHHHHHHHhCCCcccCC
Q 021767 269 KLPRGPRALLFRQIL------PGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 269 ~~~~~~~~~~~~~~~------~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
+.+.+.....|.... +.+..+++++.++|+|+|+|++|+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlA 278 (336)
T KOG1575|consen 233 DSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLA 278 (336)
T ss_pred ccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 445554443333322 4477889999999999999999986
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=9.4e-55 Score=398.32 Aligned_cols=248 Identities=35% Similarity=0.593 Sum_probs=213.4
Q ss_pred cceeecC--CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhC
Q 021767 39 WEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEI 116 (308)
Q Consensus 39 m~~~~lg--g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~ 116 (308)
|++++|| |++||+||||||.+|+. +...+.+++.++|++|+++|||+||||+.||. |.||++||++|+.+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~----~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~----g~sE~ilG~~l~~~ 72 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD----TDDEEEAEAIEILDAALDAGINFFDTADVYGD----GRSEEILGEALKER 72 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC----CCchhhhHHHHHHHHHHHcCCCEEECccccCC----CchHHHHHHHHhcc
Confidence 7899999 99999999999999863 22334457788999999999999999999998 89999999999985
Q ss_pred CCCCCCCCCEEEEeccCCCC--------CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHH
Q 021767 117 PGQKQVQNNIVIATKFAAYP--------WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMY 188 (308)
Q Consensus 117 ~~~~~~R~~v~i~tK~~~~~--------~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~ 188 (308)
. .|++++|+||++... .+.++++|+++++.||+|||||||||||+||||.. .|.+ +++++|.+|+
T Consensus 73 ~----~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~-~p~~--e~~~aL~~l~ 145 (316)
T COG0667 73 G----RRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPE-TPIE--ETLEALDELV 145 (316)
T ss_pred C----CCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCC-CCHH--HHHHHHHHHH
Confidence 3 299999999998653 34699999999999999999999999999999763 5544 4799999999
Q ss_pred HcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCC
Q 021767 189 EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPS 268 (308)
Q Consensus 189 ~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~ 268 (308)
++||||+||+||++.+++.++.+.+ .+++++|.+||+++|..+. +++++|+++||++++||||++|+|++||.++
T Consensus 146 ~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~ 220 (316)
T COG0667 146 REGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLPG 220 (316)
T ss_pred HcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCCC
Confidence 9999999999999999999998763 4799999999999986665 6999999999999999999999999999875
Q ss_pred CCCCCchh---hhh-hccccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 269 KLPRGPRA---LLF-RQILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 269 ~~~~~~~~---~~~-~~~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
+.+.+. ..+ ....+...+++..++++|+++|+||+|+|
T Consensus 221 --~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~A 262 (316)
T COG0667 221 --PEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVA 262 (316)
T ss_pred --cchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 322222 122 22556778888999999999999999986
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=6.9e-54 Score=379.61 Aligned_cols=215 Identities=30% Similarity=0.480 Sum_probs=188.3
Q ss_pred cceeecC-CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCC
Q 021767 39 WEKVKMG-PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIP 117 (308)
Q Consensus 39 m~~~~lg-g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~ 117 (308)
+.+.+|+ |.+||.||||||++++. +...+.|.+|++.|||+||||..||+ |+.+|+++++
T Consensus 3 ~~~~~l~~g~~iP~iGlGt~~~~~~----------~~~~~av~~Al~~Gyr~IDTA~~Ygn-------E~~VG~aI~~-- 63 (280)
T COG0656 3 KTKVTLNNGVEIPAIGLGTWQIGDD----------EWAVRAVRAALELGYRLIDTAEIYGN-------EEEVGEAIKE-- 63 (280)
T ss_pred CceeecCCCCcccCcceEeeecCCc----------hhHHHHHHHHHHhCcceEecHhHhcC-------HHHHHHHHHh--
Confidence 5668888 88999999999997642 33889999999999999999999998 9999999998
Q ss_pred CCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEE
Q 021767 118 GQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVG 197 (308)
Q Consensus 118 ~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 197 (308)
++++|+++||+||+|.. +.+++.+.+++++||++||+||+|||+||||... ......++|++|++++++||||+||
T Consensus 64 -s~v~ReelFittKvw~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~~~~~~etw~alE~l~~~G~ir~IG 139 (280)
T COG0656 64 -SGVPREELFITTKVWPS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-KYVVIEETWKALEELVDEGLIRAIG 139 (280)
T ss_pred -cCCCHHHeEEEeecCCc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-cCccHHHHHHHHHHHHhcCCccEEE
Confidence 56899999999999876 3478999999999999999999999999999542 1111457999999999999999999
Q ss_pred eecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccc-cCCCCCCCCCCCCchh
Q 021767 198 VSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGM-LTGKYTPSKLPRGPRA 276 (308)
Q Consensus 198 vSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~-L~~~~~~~~~~~~~~~ 276 (308)
||||+.++|+++++. ..+.|++||++|||+.+.. +++++|+++||.+++||||+.|. |...
T Consensus 140 VSNF~~~~L~~l~~~---~~~~p~~NQIe~hp~~~q~---el~~~~~~~gI~v~AysPL~~g~~l~~~------------ 201 (280)
T COG0656 140 VSNFGVEHLEELLSL---AKVKPAVNQIEYHPYLRQP---ELLPFCQRHGIAVEAYSPLAKGGKLLDN------------ 201 (280)
T ss_pred eeCCCHHHHHHHHHh---cCCCCceEEEEeccCCCcH---HHHHHHHHcCCEEEEECCcccccccccC------------
Confidence 999999999999886 4478999999999997654 69999999999999999999654 3222
Q ss_pred hhhhccccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 277 LLFRQILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
..|.+||++||+|++||+
T Consensus 202 --------------~~l~~Ia~k~g~t~AQv~ 219 (280)
T COG0656 202 --------------PVLAEIAKKYGKTPAQVA 219 (280)
T ss_pred --------------hHHHHHHHHhCCCHHHHH
Confidence 689999999999999985
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=4.1e-51 Score=380.18 Aligned_cols=256 Identities=25% Similarity=0.382 Sum_probs=209.3
Q ss_pred CcceeecC--CceeCcceeccCc-cCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHh
Q 021767 38 PWEKVKMG--PLSASPMGFGTWA-WGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFIS 114 (308)
Q Consensus 38 ~m~~~~lg--g~~vs~lglG~~~-~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~ 114 (308)
.|+|++|| |++||+||||||+ +|. ..+.+++.++|+.|++.|||+||||+.||+ ..|.||+.+|++|+
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~~g~-------~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~--~~g~sE~~lG~~l~ 82 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHNFGH-------VNALESQRAILRKAFDLGITHFDLANNYGP--PPGSAEENFGRLLR 82 (346)
T ss_pred CcceeecCCCCcccccccccCccccCC-------CCCHHHHHHHHHHHHHCCCCEEEChhhhCC--CCCCcHHHHHHHHH
Confidence 39999999 9999999999996 431 134567899999999999999999999993 12789999999998
Q ss_pred hCCCCCCCCCCEEEEeccCCC--C----CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHH
Q 021767 115 EIPGQKQVQNNIVIATKFAAY--P----WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMY 188 (308)
Q Consensus 115 ~~~~~~~~R~~v~i~tK~~~~--~----~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~ 188 (308)
+.. ...|+++||+||++.. . .+.+++++++++++||++||+||||+|++|||+.. .+. +++|++|++|+
T Consensus 83 ~~~--~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~-~~~--~e~~~al~~l~ 157 (346)
T PRK09912 83 EDF--AAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDEN-TPM--EETASALAHAV 157 (346)
T ss_pred hcc--cCCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCC-CCH--HHHHHHHHHHH
Confidence 631 1259999999998632 1 13579999999999999999999999999998643 443 45899999999
Q ss_pred HcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCC
Q 021767 189 EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPS 268 (308)
Q Consensus 189 ~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~ 268 (308)
++||||+||||||++++++++.+.+...+++++++|++||++++..++.+++++|+++||++++|+||++|+|+++|.+.
T Consensus 158 ~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~ 237 (346)
T PRK09912 158 QSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG 237 (346)
T ss_pred HcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC
Confidence 99999999999999999998888766666788999999999998766558999999999999999999999999998653
Q ss_pred CCCCCchh-------hhhhc--cccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 269 KLPRGPRA-------LLFRQ--ILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 269 ~~~~~~~~-------~~~~~--~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
. |.+.+. ..|.+ ..+...++++.|.++|+++|+|++|||
T Consensus 238 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~A 285 (346)
T PRK09912 238 I-PQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMA 285 (346)
T ss_pred C-CCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 2 222110 01111 123445677899999999999999986
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=5e-51 Score=375.56 Aligned_cols=251 Identities=28% Similarity=0.440 Sum_probs=205.3
Q ss_pred eeecC--CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCC
Q 021767 41 KVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPG 118 (308)
Q Consensus 41 ~~~lg--g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~ 118 (308)
||+|| |++||+||||||.+.+ . ..+.+++.++|+.|++.|||+||||+.||. |.||+.+|++|++.
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g-----~-~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~----g~sE~~lG~~l~~~-- 68 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFG-----G-QISDEMAEQLLTLAYENGINLFDTAEVYAA----GKAEVVLGNILKKK-- 68 (317)
T ss_pred CcccCCCCCeecceeecCCccCC-----C-CCCHHHHHHHHHHHHHcCCCeEECccccCC----CccHHHHHHHHHhc--
Confidence 57788 9999999999997321 1 246688999999999999999999999998 88999999999863
Q ss_pred CCCCCCCEEEEeccCCC-----CCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCc
Q 021767 119 QKQVQNNIVIATKFAAY-----PWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV 193 (308)
Q Consensus 119 ~~~~R~~v~i~tK~~~~-----~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~i 193 (308)
+..|++++|+||++.. ..+.+++++++++++||++||+||||+|++|||+.. .+. .++|++|++|+++|||
T Consensus 69 -~~~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~-~~~--~e~~~aL~~l~~~G~i 144 (317)
T TIGR01293 69 -GWRRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPN-TPM--EETVRAMTYVINQGMA 144 (317)
T ss_pred -CCCcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCC-CCH--HHHHHHHHHHHHcCCe
Confidence 1469999999998532 124589999999999999999999999999999643 343 3589999999999999
Q ss_pred cEEEeecCCHHHHHHHHHHHHHcC-CCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCC
Q 021767 194 RAVGVSNYGPNQLVKIHDYLTARG-VPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPR 272 (308)
Q Consensus 194 r~iGvSn~~~~~l~~~~~~~~~~~-~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~ 272 (308)
|+||||||+.+++.++...+...+ ++++++|++||++++...+.+++++|+++||++++|+||++|+|+++|... .+.
T Consensus 145 r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~ 223 (317)
T TIGR01293 145 MYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPP 223 (317)
T ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCC
Confidence 999999999999988877666555 578999999999998754448999999999999999999999999998654 232
Q ss_pred Cchhhh-----hhc-----cccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 273 GPRALL-----FRQ-----ILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 273 ~~~~~~-----~~~-----~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
+.+... +.. ......+.++.|+++|+++|+|++|||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqla 269 (317)
T TIGR01293 224 YSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLA 269 (317)
T ss_pred cccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 222110 110 011245667889999999999999986
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.2e-50 Score=377.31 Aligned_cols=258 Identities=25% Similarity=0.408 Sum_probs=210.1
Q ss_pred cceeecC--CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCC---CCCchHHHHHHHH
Q 021767 39 WEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGR---LNGKSEKLLGKFI 113 (308)
Q Consensus 39 m~~~~lg--g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~---~~g~sE~~lG~~L 113 (308)
|+|++|| |++||+||||||+||+. .+.+++.++|+.|++.|||+||||+.||.++ ..|.||..+|++|
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~-------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL 73 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ-------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWL 73 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC-------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHH
Confidence 7799999 99999999999998742 3568899999999999999999999998421 3488999999999
Q ss_pred hhCCCCCCCCCCEEEEeccCCCC----------CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCC----------
Q 021767 114 SEIPGQKQVQNNIVIATKFAAYP----------WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYA---------- 173 (308)
Q Consensus 114 ~~~~~~~~~R~~v~i~tK~~~~~----------~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~---------- 173 (308)
++. ..|++++|+||++... ...+++.+++++++||++||+||||||++|||+....
T Consensus 74 ~~~----~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~ 149 (346)
T PRK10625 74 AKR----GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWT 149 (346)
T ss_pred hhc----CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccc
Confidence 863 2599999999985321 1358999999999999999999999999999853100
Q ss_pred ----ChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCC-CceeeeeccCcccCCcchhhHHHHHHHhCC
Q 021767 174 ----PPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGV-PLCSAQVQFSLLSMGENQLEIKNICDSLGI 248 (308)
Q Consensus 174 ----~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~-~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi 248 (308)
.....++|++|++|+++||||+||||||+.+++.++...+...+. .+.++|++||++++..+. +++++|+++||
T Consensus 150 ~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll~~~~~~gi 228 (346)
T PRK10625 150 DSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLAEVSQYEGV 228 (346)
T ss_pred cccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHHHHHHHcCC
Confidence 112346999999999999999999999999999988776655554 488899999999887644 89999999999
Q ss_pred cEEEcccccccccCCCCCCCCCCCCchhhh---hhc-cccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 249 RLISYSPLGLGMLTGKYTPSKLPRGPRALL---FRQ-ILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 249 ~v~a~spl~~G~L~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
++++|+||++|+|+++|.....|.+.+... |.. ..+...++++.|+++|++||+|++|||
T Consensus 229 ~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqva 292 (346)
T PRK10625 229 ELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMA 292 (346)
T ss_pred eEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999986543333322111 211 123456678899999999999999986
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.6e-49 Score=365.28 Aligned_cols=245 Identities=26% Similarity=0.360 Sum_probs=199.5
Q ss_pred eeecC--CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCC
Q 021767 41 KVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPG 118 (308)
Q Consensus 41 ~~~lg--g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~ 118 (308)
||+|| |++||+||||||+||+. |+ ..+.+++.++|++|++.|||+||||+.||. |.||+.+|++|++..
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~~--~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----g~sE~~lG~al~~~~- 71 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--FG--PVSEEDAIASVREAFRLGINFFDTSPYYGG----TLSEKVLGKALKALG- 71 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--CC--CCCHHHHHHHHHHHHHcCCCEEECcCccCC----CchHHHHHHHHHhCC-
Confidence 57888 89999999999999852 33 356788999999999999999999999998 999999999998743
Q ss_pred CCCCCCCEEEEeccCCCC--CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEE
Q 021767 119 QKQVQNNIVIATKFAAYP--WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAV 196 (308)
Q Consensus 119 ~~~~R~~v~i~tK~~~~~--~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i 196 (308)
..|+++||+||++... .+.+++.+++++++||++||+||||+|++|||+.........++|++|++|+++||||+|
T Consensus 72 --~~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~i 149 (314)
T PLN02587 72 --IPREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFI 149 (314)
T ss_pred --CCcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEE
Confidence 4799999999997532 356899999999999999999999999999986321111223689999999999999999
Q ss_pred EeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchh
Q 021767 197 GVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRA 276 (308)
Q Consensus 197 GvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~ 276 (308)
|||||+.++++.+.+.+....+.+..+|++||+.++.. .+++++|+++||++++|+||++|+|++++.+.
T Consensus 150 GvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------- 219 (314)
T PLN02587 150 GITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL--EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-------- 219 (314)
T ss_pred EecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH--HHHHHHHHHcCceEEEechhhccccCCCCCCC--------
Confidence 99999999888776643322234555789999887543 38999999999999999999999999875321
Q ss_pred hhhhccccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 277 LLFRQILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
++...+...++++.++++|+++|+|++|+|
T Consensus 220 --~~~~~~~~~~~~~~l~~~a~~~~~s~aq~a 249 (314)
T PLN02587 220 --WHPAPPELKSACAAAATHCKEKGKNISKLA 249 (314)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 111123345667889999999999999985
No 8
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=3.7e-50 Score=355.95 Aligned_cols=220 Identities=30% Similarity=0.486 Sum_probs=190.0
Q ss_pred eeecC-CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCC-C
Q 021767 41 KVKMG-PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIP-G 118 (308)
Q Consensus 41 ~~~lg-g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~-~ 118 (308)
+++|. |.+||.||||||+. +.+++.+.++.|++.||||||||..|++ |+.+|++|+++. +
T Consensus 6 ~~~Ln~G~~mP~iGlGTw~~-----------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N-------E~evG~aik~~i~~ 67 (300)
T KOG1577|consen 6 TVKLNNGFKMPIIGLGTWQS-----------PPGQVAEAVKAAIKAGYRHIDTAHVYGN-------EKEVGEAIKELLAE 67 (300)
T ss_pred eEeccCCCccceeeeEeccc-----------ChhhHHHHHHHHHHhCcceeechhhhCC-------hHHHHHHHHHHhhh
Confidence 78888 99999999999982 3578999999999999999999999999 999999999865 3
Q ss_pred CCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCC-------------CCChhHHHHHHHHH
Q 021767 119 QKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTAN-------------YAPPQELALWNGLV 185 (308)
Q Consensus 119 ~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~-------------~~~~~~~~~~~~l~ 185 (308)
.+++|+++||+||+|... ..++.++.++++||++||+||+|||++|||-.. +...+..++|++||
T Consensus 68 ~~v~RediFiTSKlw~~~--~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE 145 (300)
T KOG1577|consen 68 GGVKREDIFITSKLWPTD--HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAME 145 (300)
T ss_pred CCcchhhheeeeccCccc--cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHH
Confidence 568999999999998753 478999999999999999999999999999432 01124567999999
Q ss_pred HHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCC
Q 021767 186 AMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKY 265 (308)
Q Consensus 186 ~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~ 265 (308)
+++++|++|+||||||+..+|++++..++ ++|.++|+++||. ..+.+++++|+++||.+.||||||++.- ++
T Consensus 146 ~~~~~Gl~rsIGVSNF~~~~le~ll~~~k---i~P~vnQvE~HP~---~~Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~- 217 (300)
T KOG1577|consen 146 KLVDEGLVRSIGVSNFNIKQLEELLNLAK---IKPAVNQVECHPY---LQQKKLVEFCKSKGIVVTAYSPLGSPGR-GS- 217 (300)
T ss_pred HHHHcCCceEeeeecCCHHHHHHHHhcCC---CCCccceeeccCC---cChHHHHHHHhhCCcEEEEecCCCCCCC-cc-
Confidence 99999999999999999999999998764 8899999999996 4555899999999999999999998632 00
Q ss_pred CCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 266 TPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
..... +.+.+||+|||+|||||+
T Consensus 218 -----------~ll~~---------~~l~~iA~K~~kt~aQIl 240 (300)
T KOG1577|consen 218 -----------DLLED---------PVLKEIAKKYNKTPAQIL 240 (300)
T ss_pred -----------ccccC---------HHHHHHHHHhCCCHHHHH
Confidence 01111 689999999999999984
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.8e-46 Score=338.36 Aligned_cols=225 Identities=21% Similarity=0.306 Sum_probs=187.3
Q ss_pred ceeecCCceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCC
Q 021767 40 EKVKMGPLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQ 119 (308)
Q Consensus 40 ~~~~lgg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~ 119 (308)
.+++|+|++||+||||||++|+...||. ..+.+++.++|+.|++.|||+||||+.||+ |.+|+.+|++|+.
T Consensus 8 ~~~~l~g~~vs~iglG~~~lg~~~~~g~-~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----~~sE~~lg~~l~~---- 78 (290)
T PRK10376 8 GTFTLGGRSVNRLGYGAMQLAGPGVFGP-PKDRDAAIAVLREAVALGVNHIDTSDFYGP----HVTNQLIREALHP---- 78 (290)
T ss_pred CceecCCeeecccceeccccCCCCcCCC-CCCHHHHHHHHHHHHHcCCCeEEChhhcCC----CcHHHHHHHHHhc----
Confidence 3456779999999999999986544553 345678999999999999999999999998 8899999999965
Q ss_pred CCCCCCEEEEeccCCC-------CCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCC--hhHHHHHHHHHHHHHc
Q 021767 120 KQVQNNIVIATKFAAY-------PWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAP--PQELALWNGLVAMYEK 190 (308)
Q Consensus 120 ~~~R~~v~i~tK~~~~-------~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~--~~~~~~~~~l~~l~~~ 190 (308)
.|++++|+||++.. ..+.+++.+++++++||++||+||||+|++||+++...| ....++|++|++|+++
T Consensus 79 --~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~ 156 (290)
T PRK10376 79 --YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQ 156 (290)
T ss_pred --CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 59999999998642 134579999999999999999999999999985321122 2245699999999999
Q ss_pred CCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCC
Q 021767 191 GLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKL 270 (308)
Q Consensus 191 G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~ 270 (308)
||||+||||||+.++++++.+. .+++++|++||++++.. .+++++|+++||++++|+||+++..
T Consensus 157 Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~--~~~~~~~~~~gi~v~a~~pL~g~~~--------- 220 (290)
T PRK10376 157 GLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRAD--DALIDALARDGIAYVPFFPLGGFTP--------- 220 (290)
T ss_pred CceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCCh--HHHHHHHHHcCCEEEEeecCCCCCh---------
Confidence 9999999999999999887764 46899999999998753 3799999999999999999974310
Q ss_pred CCCchhhhhhccccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 271 PRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
+ ..+.+.++|+++|+|++|+|
T Consensus 221 --------~---------~~~~l~~ia~~~~~t~aq~a 241 (290)
T PRK10376 221 --------L---------QSSTLSDVAASLGATPMQVA 241 (290)
T ss_pred --------h---------hhHHHHHHHHHhCCCHHHHH
Confidence 0 01578999999999999985
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=9.5e-46 Score=335.45 Aligned_cols=235 Identities=37% Similarity=0.606 Sum_probs=199.9
Q ss_pred eeecC--CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCC
Q 021767 41 KVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPG 118 (308)
Q Consensus 41 ~~~lg--g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~ 118 (308)
+++|| |.+||+||||||.++.. | .+.+++.++++.|++.|||+||||+.||. |.||+.+|++|++..
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~--~----~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~----g~sE~~lG~al~~~~- 69 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG--Y----VDEEEAAAAVRAALDAGINFIDTADVYGD----GESEELLGEALKERG- 69 (285)
T ss_pred CcccCCCCceecCcceeccccCCC--C----CCHHHHHHHHHHHHHcCCCeEECccccCC----CCCHHHHHHHHhccC-
Confidence 46788 89999999999998743 1 46689999999999999999999999998 889999999999842
Q ss_pred CCCCCCCEEEEeccCCCC---CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccE
Q 021767 119 QKQVQNNIVIATKFAAYP---WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRA 195 (308)
Q Consensus 119 ~~~~R~~v~i~tK~~~~~---~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 195 (308)
.|++++|+||++... .+.+++.+++++++||++|++||||+|+||||+... + ...++|++|++++++|+||+
T Consensus 70 ---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~-~-~~~~~~~~l~~l~~~G~ir~ 144 (285)
T cd06660 70 ---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDT-P-DIEETLRALEELVKEGKIRA 144 (285)
T ss_pred ---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC-C-CHHHHHHHHHHHHHcCCccE
Confidence 499999999998653 236899999999999999999999999999986442 2 34679999999999999999
Q ss_pred EEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCch
Q 021767 196 VGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPR 275 (308)
Q Consensus 196 iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~ 275 (308)
||||||+.+.+.++.+.+ ..+|+++|++||++++.... +++++|+++||++++|+||++|.|++++.....+..
T Consensus 145 iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~-- 218 (285)
T cd06660 145 IGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPE-- 218 (285)
T ss_pred EEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCCCCCCCh--
Confidence 999999999998887754 36899999999999987655 799999999999999999999999877543321110
Q ss_pred hhhhhccccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 276 ALLFRQILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
......+..+|+++++|++|+|
T Consensus 219 -----------~~~~~~~~~~~~~~~~s~~q~a 240 (285)
T cd06660 219 -----------GDLLEALKEIAEKHGVTPAQVA 240 (285)
T ss_pred -----------hhHHHHHHHHHHHhCCCHHHHH
Confidence 1134789999999999999875
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=4.2e-46 Score=334.95 Aligned_cols=206 Identities=22% Similarity=0.368 Sum_probs=176.6
Q ss_pred eeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEE
Q 021767 48 SASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIV 127 (308)
Q Consensus 48 ~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~ 127 (308)
+||.||||||+++ .+++.++++.|++.|||+||||+.||+ |+.+|++|++. ++.|+++|
T Consensus 2 ~vs~lglGt~~~~-----------~~~~~~~i~~A~~~Gi~~~DTA~~Yg~-------E~~lG~al~~~---~~~R~~v~ 60 (267)
T PRK11172 2 SIPAFGLGTFRLK-----------DQVVIDSVKTALELGYRAIDTAQIYDN-------EAAVGQAIAES---GVPRDELF 60 (267)
T ss_pred CCCCEeeEccccC-----------hHHHHHHHHHHHHcCCCEEEccchhCC-------HHHHHHHHHHc---CCChhHeE
Confidence 6999999999864 267899999999999999999999997 99999999863 25799999
Q ss_pred EEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHH
Q 021767 128 IATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLV 207 (308)
Q Consensus 128 i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~ 207 (308)
|+||++.. ..+++.+++++++||+|||+||||+|++|||+... .....++|++|++|+++||||+||||||+.++++
T Consensus 61 i~TK~~~~--~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~-~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~ 137 (267)
T PRK11172 61 ITTKIWID--NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPND-EVSVEEFMQALLEAKKQGLTREIGISNFTIALMK 137 (267)
T ss_pred EEEEeCCC--CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHH
Confidence 99998643 45799999999999999999999999999985431 1223468999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChH
Q 021767 208 KIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLK 287 (308)
Q Consensus 208 ~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (308)
++++.+. ..+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 138 ~~~~~~~--~~~~~~~Q~~~~~~~~~---~~ll~~~~~~gi~v~a~spl~~G~~~~~----------------------- 189 (267)
T PRK11172 138 QAIAAVG--AENIATNQIELSPYLQN---RKVVAFAKEHGIHVTSYMTLAYGKVLKD----------------------- 189 (267)
T ss_pred HHHHhcC--CCCCeEEeeecCCCCCc---HHHHHHHHHCCCEEEEECCCCCCcccCC-----------------------
Confidence 8876421 12689999999999863 3899999999999999999999865321
Q ss_pred HHHHHHHHHHHHhCCCcccCC
Q 021767 288 PLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 288 ~~~~~l~~ia~~~g~s~aqva 308 (308)
+.|+++|+++|+|++|+|
T Consensus 190 ---~~l~~~a~~~~~s~aqva 207 (267)
T PRK11172 190 ---PVIARIAAKHNATPAQVI 207 (267)
T ss_pred ---HHHHHHHHHhCCCHHHHH
Confidence 468999999999999975
No 12
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1e-46 Score=321.12 Aligned_cols=233 Identities=25% Similarity=0.401 Sum_probs=203.6
Q ss_pred cceeecC--CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhC
Q 021767 39 WEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEI 116 (308)
Q Consensus 39 m~~~~lg--g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~ 116 (308)
|++++|+ ++++|++.+|+|++.. |+ .++.+....++.|+|.|||+||-|++||. |.+|+++|.+|+..
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~---~~~~e~~~~Ie~~le~Gitt~DhADIYGg----y~cE~~fg~aL~l~ 70 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN---MSARELLSFIETALELGITTFDHADIYGG----YQCEALFGEALKLA 70 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc---CCHHHHHHHHHHHHHcCcccchhhhhcCC----ccHHHHHHHHHhcC
Confidence 6789999 8999999999999864 44 45578999999999999999999999999 99999999999987
Q ss_pred CCCCCCCCCEEEEeccCCC----------CCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHH
Q 021767 117 PGQKQVQNNIVIATKFAAY----------PWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVA 186 (308)
Q Consensus 117 ~~~~~~R~~v~i~tK~~~~----------~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~ 186 (308)
+ ..|+++.|+||+|.. +++.+.++|.+++|+||++|+|||+|+++||+||.-. +.+++.+++..
T Consensus 71 p---~lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLm---d~eeVAeAf~~ 144 (298)
T COG4989 71 P---GLREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLM---DAEEVAEAFTH 144 (298)
T ss_pred h---hhhhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccC---CHHHHHHHHHH
Confidence 6 489999999999852 4677999999999999999999999999999997544 45679999999
Q ss_pred HHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCC
Q 021767 187 MYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYT 266 (308)
Q Consensus 187 l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~ 266 (308)
|++.||||++|||||++.|++.+.+.+. .++.+||+++|+++.....++.+++|+++.|.+++||||++|.+
T Consensus 145 L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~----- 216 (298)
T COG4989 145 LHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGL----- 216 (298)
T ss_pred HHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcc-----
Confidence 9999999999999999999988876633 46899999999999887777899999999999999999999843
Q ss_pred CCCCCCCchhhhhhccccChHHHHHHHHHHHHHhC-CCcccCC
Q 021767 267 PSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRG-KTIPQLL 308 (308)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g-~s~aqva 308 (308)
|.. .+..+++.++|..||+++| +|..+||
T Consensus 217 ------------F~g-~~~~q~l~~~l~~ia~e~ga~s~~~Va 246 (298)
T COG4989 217 ------------FLG-DDKFQRLRKVLDRIAEEYGAVSITAVA 246 (298)
T ss_pred ------------ccC-CcchHHHHHHHHHHHHHhCcccHHHHH
Confidence 221 2445667789999999999 6877764
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.3e-45 Score=334.32 Aligned_cols=233 Identities=33% Similarity=0.589 Sum_probs=187.1
Q ss_pred cceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEe
Q 021767 51 PMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIAT 130 (308)
Q Consensus 51 ~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~t 130 (308)
+||||||++|+. ..+.+++.++|+.|++.|||+||||+.||+ |.||+.+|++|++.. .+|++++|+|
T Consensus 1 ~l~lG~~~~~~~------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~----g~sE~~lg~~l~~~~---~~r~~~~i~t 67 (283)
T PF00248_consen 1 PLGLGTWRLGGE------RVSEEEAEAILRRALEAGINFFDTADSYGN----GRSERILGRALRKSR---VPRDDIFIST 67 (283)
T ss_dssp SBEEECTTBTTT------TSTHHHHHHHHHHHHHTT--EEEECGGGGG----GTHHHHHHHHHHHTS---STGGGSEEEE
T ss_pred CEEEEccccCCC------CCCHHHHHHHHHHHHHcCCCeecccccccc----ccccccccccccccc---cccccccccc
Confidence 589999998752 467899999999999999999999999988 889999999999833 6899999999
Q ss_pred ccC---CCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHH
Q 021767 131 KFA---AYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLV 207 (308)
Q Consensus 131 K~~---~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~ 207 (308)
|+. ......+++.+++++++||++||+||||+|++|||+.... ...++|++|++|+++|+||+||||||+++.++
T Consensus 68 K~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 145 (283)
T PF00248_consen 68 KVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED--ALEEVWEALEELKKEGKIRHIGVSNFSPEQLE 145 (283)
T ss_dssp EEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS--HHHHHHHHHHHHHHTTSEEEEEEES--HHHHH
T ss_pred cccccccccccccccccccccccccccccccchhcccccccccccc--ccchhhhhhhhccccccccccccccccccccc
Confidence 991 1224569999999999999999999999999999964432 34679999999999999999999999999888
Q ss_pred HHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChH
Q 021767 208 KIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLK 287 (308)
Q Consensus 208 ~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (308)
.+.. ...++|+++|++||++++.... +++++|+++||++++|+||++|+|++++.....+..... .....
T Consensus 146 ~~~~---~~~~~~~~~q~~~n~~~~~~~~-~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~------~~~~~ 215 (283)
T PF00248_consen 146 AALK---IGSIPPDVVQINYNLLNRREEE-GLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRAS------LRDAQ 215 (283)
T ss_dssp HHHT---CTSS-ESEEEEE-BTTBHBGGH-HHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSG------SSTHG
T ss_pred cccc---cccccccccccccccccccccc-cccccccccccccccccccccCccccccccCCCcccccc------cchhh
Confidence 8722 2336899999999999655554 999999999999999999999999998765432221110 01133
Q ss_pred HHHHHHHHHHHHhCCCcccCC
Q 021767 288 PLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 288 ~~~~~l~~ia~~~g~s~aqva 308 (308)
+..+.+.++|+++|+|++|+|
T Consensus 216 ~~~~~l~~~a~~~g~s~~q~a 236 (283)
T PF00248_consen 216 ELADALRELAEEHGVSPAQLA 236 (283)
T ss_dssp GGHHHHHHHHHHHTSSHHHHH
T ss_pred hhhhhhhhhhhhcccccchhh
Confidence 445799999999999999975
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=4.3e-45 Score=331.94 Aligned_cols=231 Identities=21% Similarity=0.257 Sum_probs=185.5
Q ss_pred CceeCcceeccCccCCCCc-C--CCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCC
Q 021767 46 PLSASPMGFGTWAWGNQFL-W--GYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQV 122 (308)
Q Consensus 46 g~~vs~lglG~~~~g~~~~-~--~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~ 122 (308)
+++||+||||||+||+... | .+...+.+++.++|+.|++.|||+||||+.||. ||+.+|++|+. ..
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~------SE~~lG~al~~-----~~ 70 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR------AETVLGQLIPR-----PV 70 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh------HHHHHhhhhcc-----CC
Confidence 4689999999999985311 1 123467889999999999999999999999997 89999999975 13
Q ss_pred CCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCC
Q 021767 123 QNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYG 202 (308)
Q Consensus 123 R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 202 (308)
|++++|+||.. ..+++.+++++++||+|||+||||+|++|||+....+. ..++|++|++|+++||||+||||||+
T Consensus 71 ~~~~~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~-~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 71 PFRVTLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPH-GAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred ceEeecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcc-hHHHHHHHHHHHHcCCcceEeeeccC
Confidence 56789999853 34789999999999999999999999999986433332 23589999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhcc
Q 021767 203 PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQI 282 (308)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 282 (308)
++++.++... .+|+++|++||++++..+..+++++|+++||++++|+||++|+|++... ..+ ..+
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~-----~~~--- 210 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP-----AQL--- 210 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc-----cch---
Confidence 9988766432 5799999999999987654479999999999999999999999975311 111 011
Q ss_pred ccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 283 LPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 283 ~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
.+....+..+.++++++++|++|+|
T Consensus 211 -~~~~~~~~~~~~~~~~~~~s~aqla 235 (292)
T PRK14863 211 -KGASGRLSRVRRMIAEGRSDPLQAA 235 (292)
T ss_pred -hhhhHHHHHHHHHHHHcCCCHHHHH
Confidence 1223445678888889999999975
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2e-43 Score=318.63 Aligned_cols=211 Identities=25% Similarity=0.445 Sum_probs=179.6
Q ss_pred eeecC-CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCC
Q 021767 41 KVKMG-PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQ 119 (308)
Q Consensus 41 ~~~lg-g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~ 119 (308)
+++|. |++||+||||||+++ .+++.++|++|++.|+|+||||+.||+ |+.+|++|++..
T Consensus 6 ~~~l~~g~~v~~lglG~~~~~-----------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~-------E~~lG~al~~~~-- 65 (275)
T PRK11565 6 VIKLQDGNVMPQLGLGVWQAS-----------NEEVITAIHKALEVGYRSIDTAAIYKN-------EEGVGKALKEAS-- 65 (275)
T ss_pred eEEcCCCCccCCcceECccCC-----------HHHHHHHHHHHHHhCCCEEEchhhhCC-------HHHHHHHHHHcC--
Confidence 46675 999999999999752 478999999999999999999999997 999999998742
Q ss_pred CCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEee
Q 021767 120 KQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS 199 (308)
Q Consensus 120 ~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 199 (308)
+.|++++|+||++. .+++.+++++++||++|++||||+|++|||+....+ ..++|++|++|+++|+||+||||
T Consensus 66 -~~R~~~~i~tK~~~----~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~--~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 66 -VAREELFITTKLWN----DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDH--YVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred -CCHHHEEEEEEecC----cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCc--HHHHHHHHHHHHHcCCeeEEeec
Confidence 46999999999863 367899999999999999999999999998654322 24689999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhh
Q 021767 200 NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLF 279 (308)
Q Consensus 200 n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~ 279 (308)
||+.++++++.+. .+++|.++|++||++++. .+++++|+++||.+++|+||++|.- + .|
T Consensus 139 n~~~~~l~~~~~~---~~v~~~~~Q~~~~~~~~~---~~~~~~~~~~~i~~~a~spl~~G~~-~--------------~~ 197 (275)
T PRK11565 139 NFQIHHLQRLIDE---TGVTPVINQIELHPLMQQ---RQLHAWNATHKIQTESWSPLAQGGK-G--------------VF 197 (275)
T ss_pred cCCHHHHHHHHHh---CCCCceeeeeecCCccch---HHHHHHHHHCCCEEEEEccCCCCCc-c--------------cc
Confidence 9999999887643 446789999999998763 3899999999999999999997631 0 01
Q ss_pred hccccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 280 RQILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 280 ~~~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
.. +.|.++|++||+|++|||
T Consensus 198 ~~---------~~l~~ia~~~g~s~aq~a 217 (275)
T PRK11565 198 DQ---------KVIRDLADKYGKTPAQIV 217 (275)
T ss_pred cC---------HHHHHHHHHhCCCHHHHH
Confidence 11 579999999999999985
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.5e-40 Score=285.48 Aligned_cols=243 Identities=24% Similarity=0.309 Sum_probs=198.3
Q ss_pred CcceeecC--CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhh
Q 021767 38 PWEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISE 115 (308)
Q Consensus 38 ~m~~~~lg--g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~ 115 (308)
.|+||.|| |++||+|+||+..++.. ++ ..+.++....+..|+.+|||+|||++.||. +.||..+|.++++
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~--fg--d~~~e~~i~tv~eA~k~GINyiDTsp~Ygq----s~se~~lg~al~~ 92 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQL--FG--DEDEEEGILTVIEAFKSGINYIDTSPYYGQ----SRSEEGLGLALKD 92 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhh--cC--CcchhhhHHHHHHHHHccccceecCcccCc----chhHHHHHHHHhh
Confidence 48999999 99999999999999865 33 245567777777799999999999999999 9999999999999
Q ss_pred CCCCCCCCCCEEEEeccCCCC------CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCC-CCChhHHHHHHHHHHHH
Q 021767 116 IPGQKQVQNNIVIATKFAAYP------WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTAN-YAPPQELALWNGLVAMY 188 (308)
Q Consensus 116 ~~~~~~~R~~v~i~tK~~~~~------~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~-~~~~~~~~~~~~l~~l~ 188 (308)
++|+.+||+||++... ++++.+.+|+++++||+||++||+|++++|..+.- .......+++.+|+++|
T Consensus 93 -----vPR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk 167 (342)
T KOG1576|consen 93 -----VPREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELK 167 (342)
T ss_pred -----CChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHH
Confidence 7899999999999753 57799999999999999999999999999966432 11223456899999999
Q ss_pred HcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeee--eccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCC
Q 021767 189 EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQ--VQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYT 266 (308)
Q Consensus 189 ~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q--~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~ 266 (308)
++||||+|||+.|..+-+.++.+. ....++++- .+|++.+... ...+++.+.+|++|+.-++++.|+|+.+=.
T Consensus 168 ~~Gk~RfiGitgypldvl~~~ae~---~~G~~dvvlsY~ry~l~d~tL--l~~~~~~~sk~vgVi~AsalsmgLLt~~gp 242 (342)
T KOG1576|consen 168 QEGKIRFIGITGYPLDVLTECAER---GKGRLDVVLSYCRYTLNDNTL--LRYLKRLKSKGVGVINASALSMGLLTNQGP 242 (342)
T ss_pred hcCceeEeeecccchHHHHHHHhc---CCCceeeehhhhhhccccHHH--HHHHHHHHhcCceEEehhhHHHHHhhcCCC
Confidence 999999999999999988887643 113466654 6666654333 267888899999999999999999987521
Q ss_pred CCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 267 PSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
+ .|++..+++.+...+-.++|++.|+....+|
T Consensus 243 ---~-------~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA 274 (342)
T KOG1576|consen 243 ---P-------PWHPASDELKEAAKAAAEYCQSRNVELGKLA 274 (342)
T ss_pred ---C-------CCCCCCHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 1 2555667778888888999999998776543
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=284.01 Aligned_cols=208 Identities=23% Similarity=0.290 Sum_probs=176.2
Q ss_pred cceeecC--CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhC
Q 021767 39 WEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEI 116 (308)
Q Consensus 39 m~~~~lg--g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~ 116 (308)
|.||+++ |.++|.+|||||++... |+ ...+.+.+.++|++|+++||||||||..|.. |.||..+|++|++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~-~~id~~~~~~~i~~aie~GiNyidTA~~Yh~----g~sE~~lgkaL~~- 72 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ-GSIDEENANETIDYAIEHGINYIDTAWPYHG----GESEEFLGKALKD- 72 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC-CCccHHHHHHHHHHHHHcCCceEeecccccC----CCchHHHHHHhhh-
Confidence 7899999 99999999999997643 43 4467788999999999999999999999966 7799999999998
Q ss_pred CCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCC-CCChhHHHHHHHHHHHHHcCCccE
Q 021767 117 PGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTAN-YAPPQELALWNGLVAMYEKGLVRA 195 (308)
Q Consensus 117 ~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~-~~~~~~~~~~~~l~~l~~~G~ir~ 195 (308)
..|++|+++||+..++ -.+.+.+++-++++|++|++||+|+|+||....+ +......++++.++++|++|+||+
T Consensus 73 ----~~Rekv~LaTKlp~~~-~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~ 147 (391)
T COG1453 73 ----GYREKVKLATKLPSWP-VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRN 147 (391)
T ss_pred ----cccceEEEEeecCCcc-ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEE
Confidence 3799999999996542 2388999999999999999999999999987532 111233357999999999999999
Q ss_pred EEeecCC-HHHHHHHHHHHHHcCCCceeeeeccCcccCCcch-hhHHHHHHHhCCcEEEcccccccccCCC
Q 021767 196 VGVSNYG-PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQ-LEIKNICDSLGIRLISYSPLGLGMLTGK 264 (308)
Q Consensus 196 iGvSn~~-~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~ 264 (308)
+|+|.|+ .+.+.+++.. .+++.+|++||.+++.... .+.+++|.++|++|+.++|+.+|-|..+
T Consensus 148 ~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~ 213 (391)
T COG1453 148 AGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN 213 (391)
T ss_pred eeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC
Confidence 9999997 5566666654 6799999999999875431 2789999999999999999999988764
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.35 E-value=1.1e-06 Score=75.60 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcc
Q 021767 178 LALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 178 ~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
..+|+.||+++.+|+|..||||.|+..+|++++..+. +.|.++|+++.-++.-+. +|.++|..++|.+...+
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCH--HHHHHhhhcceeeeecC
Confidence 4689999999999999999999999999999988754 889999999988876555 89999999999997654
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=94.09 E-value=2.5 Score=35.95 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHH--------
Q 021767 77 QTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC-------- 148 (308)
Q Consensus 77 ~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~-------- 148 (308)
+++...++.|-+.+|.....|. +-+.|++. + ++.. .| -..+.+.+.+++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~----------LL~~L~~~------k-~v~g---~G---vEid~~~v~~cv~rGv~Viq 61 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGE----------LLAYLKDE------K-QVDG---YG---VEIDPDNVAACVARGVSVIQ 61 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchH----------HHHHHHHh------c-CCeE---EE---EecCHHHHHHHHHcCCCEEE
Confidence 4566778889999998766553 44666552 1 1110 11 133566666554
Q ss_pred ---HHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeee
Q 021767 149 ---RASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQV 225 (308)
Q Consensus 149 ---e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 225 (308)
++.|....-+.+|.+.+... -.....-.+.|+++.+-|+-.=|++.||..+..+.-+- ..|--|..-+.
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqt-----LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~---~~GrmPvt~~l 133 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQT-----LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLL---LRGRMPVTKAL 133 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhH-----HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHH---hcCCCCCCCCC
Confidence 55566666667777776621 00112234567788888887789999999887664322 24444777888
Q ss_pred ccCcccCCcc----hhhHHHHHHHhCCcEEEcccccccc
Q 021767 226 QFSLLSMGEN----QLEIKNICDSLGIRLISYSPLGLGM 260 (308)
Q Consensus 226 ~~~~~~~~~~----~~~l~~~~~~~gi~v~a~spl~~G~ 260 (308)
+|+.++...- -.+..++|++.||.|.-..++..+.
T Consensus 134 Py~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 134 PYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 9888775432 2478999999999999988888764
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.91 E-value=4.2 Score=37.26 Aligned_cols=157 Identities=11% Similarity=0.096 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+.++..+.++.+++.|++.|+.-- |.. ...+...=+++++. .. ++-|.-+... .++.+.. ..+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~---~~~d~~~v~~lr~~-----~g-~~~l~vD~n~---~~~~~~A-~~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGD---LEDDIERIRAIREA-----AP-DARLRVDANQ---GWTPEEA-VELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCC---hhhHHHHHHHHHHh-----CC-CCeEEEeCCC---CcCHHHH-HHHHH
Confidence 446677888888999999998743 320 01122222344442 12 5667777632 2344433 22333
Q ss_pred HHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCc
Q 021767 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~ 229 (308)
.|++++ +.++..|- .+ + -++.+.+|++.-.|. ..|=+-++..++.++++. ...+++|+....
T Consensus 199 ~l~~~~-----l~~iEeP~---~~-~---d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~ 261 (316)
T cd03319 199 ELAELG-----VELIEQPV---PA-G---DDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMK 261 (316)
T ss_pred HHHhcC-----CCEEECCC---CC-C---CHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccc
Confidence 444444 44444331 11 1 256778888887776 334555678887777653 347888887655
Q ss_pred ccCCcchhhHHHHHHHhCCcEEEccccccc
Q 021767 230 LSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 230 ~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 259 (308)
+---..-.++..+|+++||.++..+-+.++
T Consensus 262 ~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 262 TGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 321112247899999999999876554443
No 21
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=89.67 E-value=1.9 Score=38.13 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHH-----------------HHhhCCCCCCCCCCEEEEec
Q 021767 69 ESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGK-----------------FISEIPGQKQVQNNIVIATK 131 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~-----------------~L~~~~~~~~~R~~v~i~tK 131 (308)
+.+.++..++.+++-+.||.+|=|.-.-.. -.++-+ .|+... .....++|+|=
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s-------~d~l~~~~~~~~KIaS~dl~n~~lL~~~A---~tgkPvIlSTG 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEES-------VDFLEELGVPAYKIASGDLTNLPLLEYIA---KTGKPVILSTG 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHH-------HHHHHHHT-SEEEE-GGGTT-HHHHHHHH---TT-S-EEEE-T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHH-------HHHHHHcCCCEEEeccccccCHHHHHHHH---HhCCcEEEECC
Confidence 356788999999999999999866543221 111111 011110 13455777776
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHH
Q 021767 132 FAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHD 211 (308)
Q Consensus 132 ~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~ 211 (308)
.. +.+.|+++++...++- .-|+.++|+......|.+.. -++.|..|++.=- --||.|.|+.....-+..
T Consensus 122 ~s------tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~-NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~~A 190 (241)
T PF03102_consen 122 MS------TLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDV-NLRVIPTLKERFG-VPVGYSDHTDGIEAPIAA 190 (241)
T ss_dssp T--------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG---TTHHHHHHHHST-SEEEEEE-SSSSHHHHHH
T ss_pred CC------CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHc-ChHHHHHHHHhcC-CCEEeCCCCCCcHHHHHH
Confidence 63 6777887777664443 46999999987665555442 4677777775544 568999998754443333
No 22
>PRK08392 hypothetical protein; Provisional
Probab=89.18 E-value=14 Score=31.91 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHH
Q 021767 74 QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLA 153 (308)
Q Consensus 74 ~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~ 153 (308)
...+.++.|.+.|++.|=.+++..... ...-+..+.+. +.+. .+.++.| +.|.- -++.++. ....++.++
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~-~~~~~~y~~~i-~~l~----~~~~i~i--l~GiE-~~~~~~~-~~~~~~~~~ 84 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFT-PSKFNAYINEI-RQWG----EESEIVV--LAGIE-ANITPNG-VDITDDFAK 84 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccc-hhhHHHHHHHH-HHHh----hccCceE--EEeEE-eeecCCc-chhHHHHHh
Confidence 367889999999999996666643200 00112222222 1211 1123322 22211 0111111 223333444
Q ss_pred hhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeec-------C-CHHHHHHHHHHHHHcCCCceeeee
Q 021767 154 RLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN-------Y-GPNQLVKIHDYLTARGVPLCSAQV 225 (308)
Q Consensus 154 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn-------~-~~~~l~~~~~~~~~~~~~~~~~Q~ 225 (308)
+ .||+ +.-+|+.. .+.......+.+.++.+.+.+.-+|=-. + ..+.++++++.+.+.|..+.+|-
T Consensus 85 ~--~D~v-I~SvH~~~---~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt- 157 (215)
T PRK08392 85 K--LDYV-IASVHEWF---GRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS- 157 (215)
T ss_pred h--CCEE-EEEeecCc---CCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-
Confidence 3 4555 55668431 1112345778888888999877776311 1 13567788888888887677663
Q ss_pred ccCcccCCcchhhHHHHHHHhCCcEE
Q 021767 226 QFSLLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
.+ +.+. ..+++.|++.|+.++
T Consensus 158 ~~----~~p~-~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 158 RY----RVPD-LEFIRECIKRGIKLT 178 (215)
T ss_pred CC----CCCC-HHHHHHHHHcCCEEE
Confidence 11 1233 379999999998764
No 23
>PRK07945 hypothetical protein; Provisional
Probab=88.66 E-value=11 Score=35.10 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCCceeCCcCCCCC-CCCCchHHHHHHHHhhCCC-CCCCCC-CEEEEeccCCCCCCCChHHHHHHHH
Q 021767 73 SQLQQTFNLAVENGINLFDTADSYGTG-RLNGKSEKLLGKFISEIPG-QKQVQN-NIVIATKFAAYPWRLTPGQFVNACR 149 (308)
Q Consensus 73 ~~~~~~l~~A~e~Gi~~~DtA~~Yg~~-~~~g~sE~~lG~~L~~~~~-~~~~R~-~v~i~tK~~~~~~~~~~~~i~~~~e 149 (308)
....++++.|.+.|+..+=.+++...+ ...+.+...+-+.+....+ ....++ +|++--=+...+ +.+.+. .+
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~~-~g~~~~----~~ 185 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDILD-DGSLDQ----EP 185 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecccC-CCCcch----hH
Confidence 346789999999999988666664321 0112223322222221100 001122 122222222111 111222 23
Q ss_pred HHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeec----------CC--HHHHHHHHHHHHHcC
Q 021767 150 ASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN----------YG--PNQLVKIHDYLTARG 217 (308)
Q Consensus 150 ~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn----------~~--~~~l~~~~~~~~~~~ 217 (308)
+.|+. .||+ +.-+|+... .+.....+.|.++.+.+++.-||=-. .. ...+.++++.+...+
T Consensus 186 ~~l~~--~D~v-IgSvH~~~~----~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g 258 (335)
T PRK07945 186 ELLDR--LDVV-VASVHSKLR----MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHG 258 (335)
T ss_pred HHHHh--CCEE-EEEeecCCC----CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhC
Confidence 33333 4665 666787532 12234568888888888888887321 11 112466667777777
Q ss_pred CCceeeeeccCcccCCcchhhHHHHHHHhCCcEE
Q 021767 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
..+.+|-. .+...+. ..+++.|++.|+.++
T Consensus 259 ~~lEINt~---~~r~~P~-~~il~~a~e~G~~vt 288 (335)
T PRK07945 259 TAVEINSR---PERRDPP-TRLLRLALDAGCLFS 288 (335)
T ss_pred CEEEEeCC---CCCCCCh-HHHHHHHHHcCCeEE
Confidence 76666643 2222333 389999999999764
No 24
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=84.64 E-value=28 Score=30.87 Aligned_cols=157 Identities=14% Similarity=0.161 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHH
Q 021767 72 DSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRAS 151 (308)
Q Consensus 72 ~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~s 151 (308)
.++..+.++.+++.|++.|-.-- |.. ...+...=+++++. ..+++.|.-.... .++.+...+-+ +.
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKv--g~~---~~~d~~~v~~vr~~-----~g~~~~l~vDan~---~~~~~~a~~~~-~~ 151 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKV--GRD---PARDVAVVAALREA-----VGDDAELRVDANR---GWTPKQAIRAL-RA 151 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec--CCC---HHHHHHHHHHHHHh-----cCCCCEEEEeCCC---CcCHHHHHHHH-HH
Confidence 45667777888899999887542 210 01122233445542 2345555555421 23544433333 33
Q ss_pred HHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcc
Q 021767 152 LARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLL 230 (308)
Q Consensus 152 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~ 230 (308)
|+.+ ++.++..|-.. . -++.+.++++.-.+. ..|=+-++..++.++++. ..++++|+..+..
T Consensus 152 l~~~-----~i~~iEeP~~~----~---d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~ 214 (265)
T cd03315 152 LEDL-----GLDYVEQPLPA----D---DLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKT 214 (265)
T ss_pred HHhc-----CCCEEECCCCc----c---cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccc
Confidence 3444 44455544211 1 256777788776655 344555677877776653 3478888876654
Q ss_pred cCCcchhhHHHHHHHhCCcEEEccccccc
Q 021767 231 SMGENQLEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 231 ~~~~~~~~l~~~~~~~gi~v~a~spl~~G 259 (308)
---.+-..+.+.|+++|+.++..+.+.++
T Consensus 215 GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 215 GGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred cCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 22112247899999999999876655544
No 25
>PRK08609 hypothetical protein; Provisional
Probab=84.30 E-value=30 Score=34.73 Aligned_cols=160 Identities=13% Similarity=0.157 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCCceeCCcCCCCCC-CCCchHHHHHHHH---hhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 75 LQQTFNLAVENGINLFDTADSYGTGR-LNGKSEKLLGKFI---SEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 75 ~~~~l~~A~e~Gi~~~DtA~~Yg~~~-~~g~sE~~lG~~L---~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
..++++.|.+.|+++|=.++++.... ..|.+...+-..+ +...+ ....=+|++-.=+.. .++....-.+.
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~-~~~~i~Il~GiEv~i-----~~~g~~d~~~~ 424 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNE-KYPEIDILSGIEMDI-----LPDGSLDYDDE 424 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHH-hcCCCeEEEEEEEee-----cCCcchhhcHH
Confidence 55699999999999998887763211 1123333333222 11110 001112333332222 11222222333
Q ss_pred HHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeec------C--CHHHHHHHHHHHHHcCCCcee
Q 021767 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN------Y--GPNQLVKIHDYLTARGVPLCS 222 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn------~--~~~~l~~~~~~~~~~~~~~~~ 222 (308)
.|+. .||+ +.-+|++- . . ...++++.+.++.+.|.+.-||=-. + -...++++++.+...|..
T Consensus 425 ~L~~--~D~v-I~SvH~~~-~-~--~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~--- 494 (570)
T PRK08609 425 VLAE--LDYV-IAAIHSSF-S-Q--SEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTA--- 494 (570)
T ss_pred HHHh--hCEE-EEEeecCC-C-C--CHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCE---
Confidence 4544 4665 66778642 1 1 2344678889998889877776322 1 135567777777766654
Q ss_pred eeeccCcccCCcchhhHHHHHHHhCCcEE
Q 021767 223 AQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 223 ~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
+|++-+++..... ..++..|++.|+.++
T Consensus 495 lEINa~~~r~~~~-~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 495 LELNANPNRLDLS-AEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEcCCccccCcc-HHHHHHHHHcCCEEE
Confidence 4444544433333 389999999999754
No 26
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=83.89 E-value=26 Score=32.51 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCc--CCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTAD--SYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~--~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~ 148 (308)
+.++..+.++.+.+.|++.|-.-- .|...+.. .-+...=+++++. ..+++.|...... .++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~-~~d~~~v~~ir~~-----~g~~~~l~vDaN~---~~~~~~a~--- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDL-REDLARVRAVREA-----VGPDVDLMVDANG---RWDLAEAI--- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHH-HHHHHHHHHHHHh-----hCCCCEEEEECCC---CCCHHHHH---
Confidence 356677778888899999886432 22100000 0112222444442 2345666666632 23544433
Q ss_pred HHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeecc
Q 021767 149 RASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQF 227 (308)
Q Consensus 149 e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 227 (308)
+.+++|. ..++.+++.|-. + . -++.+.++++.-.+. ..|=|-++++.+.++++. ..++++|+..
T Consensus 207 -~~~~~l~--~~~i~~iEqP~~---~-~---~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~ 271 (357)
T cd03316 207 -RLARALE--EYDLFWFEEPVP---P-D---DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDV 271 (357)
T ss_pred -HHHHHhC--ccCCCeEcCCCC---c-c---CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCc
Confidence 2333342 235556665421 1 1 256777888876555 344556678888877653 2478888876
Q ss_pred CcccCCcchhhHHHHHHHhCCcEEEcc
Q 021767 228 SLLSMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
.-+---..-..+.+.|+++|+.++..+
T Consensus 272 ~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 272 TKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred cccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 554211122478999999999987654
No 27
>PRK13796 GTPase YqeH; Provisional
Probab=83.63 E-value=26 Score=32.92 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=84.4
Q ss_pred CcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcC---CCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCE
Q 021767 50 SPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENG---INLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNI 126 (308)
Q Consensus 50 s~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~G---i~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v 126 (308)
..++--|.++-..........++++..++++..-+.- +-.+|..+.-+. -...+.+.+. .+.-+
T Consensus 34 ~~~C~RC~~l~hy~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s------~~~~L~~~~~-------~kpvi 100 (365)
T PRK13796 34 EVYCQRCFRLKHYNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS------WIPGLHRFVG-------NNPVL 100 (365)
T ss_pred CeEchhhhhhhccCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCc------hhHHHHHHhC-------CCCEE
Confidence 3455555554332111123356677778877776554 445776664443 1333333332 34568
Q ss_pred EEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHH
Q 021767 127 VIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQL 206 (308)
Q Consensus 127 ~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 206 (308)
+|.+|.--.+.....+.+++-++...+.+|....|++.+.-.. .....++++.+.+..+.+.+--||.+|.+-..|
T Consensus 101 LViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~----g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 101 LVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK----GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred EEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC----CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 8999985432223455666666666677776656777776332 223345778887777778899999999996654
Q ss_pred HH
Q 021767 207 VK 208 (308)
Q Consensus 207 ~~ 208 (308)
..
T Consensus 177 iN 178 (365)
T PRK13796 177 IN 178 (365)
T ss_pred HH
Confidence 43
No 28
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=83.44 E-value=9.4 Score=36.66 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=66.9
Q ss_pred eCcceeccCccCCCCcC-CCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEE
Q 021767 49 ASPMGFGTWAWGNQFLW-GYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIV 127 (308)
Q Consensus 49 vs~lglG~~~~g~~~~~-~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~ 127 (308)
|-+|.+|...|.....- -....+.+++.+.++.+.+.|+.-+-.-=+||-|
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP---------------------------- 199 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLP---------------------------- 199 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------------------------
Confidence 45777777665431100 0011234556666666666666655444455531
Q ss_pred EEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEec-CCCC---------CCCChh--HHHHHHH-HHHHHHcCCcc
Q 021767 128 IATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLH-WSTA---------NYAPPQ--ELALWNG-LVAMYEKGLVR 194 (308)
Q Consensus 128 i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH-~~~~---------~~~~~~--~~~~~~~-l~~l~~~G~ir 194 (308)
.-+.+.+++.+++.++ |+.|+|.+|.+- -|.. ...|.. ..+.++. .+.|.+.|. +
T Consensus 200 ----------~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~ 267 (416)
T COG0635 200 ----------GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-R 267 (416)
T ss_pred ----------CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-c
Confidence 2277788888888876 889999999884 3321 011211 1234444 455667777 8
Q ss_pred EEEeecCCH
Q 021767 195 AVGVSNYGP 203 (308)
Q Consensus 195 ~iGvSn~~~ 203 (308)
.+|+|||.-
T Consensus 268 ~yeisnfa~ 276 (416)
T COG0635 268 QYEISNFAK 276 (416)
T ss_pred EEeechhcC
Confidence 999999986
No 29
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=83.25 E-value=14 Score=32.86 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=31.2
Q ss_pred hHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 238 EIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
..+++|+..|...+...|...|.. . . .....+...+.++.+.++|+++|++.
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~-----~------~----~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL-----T------P----PNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC-----C------C----HHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 567888888888876655432210 0 0 01122344566778888888888754
No 30
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.68 E-value=7 Score=37.08 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHH
Q 021767 73 SQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASL 152 (308)
Q Consensus 73 ~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL 152 (308)
-....++++|++.|++++|||.+... ...+....+ +..+.+..-+|-.+ +.+---....+++-.
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~-------~~~~~~~a~--------~Agit~v~~~G~dP-Gi~nv~a~~a~~~~~ 142 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP-------PWKLDEEAK--------KAGITAVLGCGFDP-GITNVLAAYAAKELF 142 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch-------hhhhhHHHH--------HcCeEEEcccCcCc-chHHHHHHHHHHHhh
Confidence 34568999999999999999987664 333333332 34566666665322 223222333333322
Q ss_pred HhhCCCcccEEEecCCCCC
Q 021767 153 ARLQIEQIGIGQLHWSTAN 171 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~ 171 (308)
. .++++|+|..+-|+..
T Consensus 143 ~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 143 D--EIESIDIYVGGLGEHG 159 (389)
T ss_pred c--cccEEEEEEecCCCCC
Confidence 2 5899999999987544
No 31
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=80.48 E-value=42 Score=31.03 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=54.1
Q ss_pred HHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccE-EEeecC---CHHHHHHHHHHHHHcCCCceeeeec
Q 021767 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRA-VGVSNY---GPNQLVKIHDYLTARGVPLCSAQVQ 226 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~-iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~~ 226 (308)
.-+.+|.|+||+-+.-.. .+....+.++..+.++...+.=.+=- |..|.. +++.++..++.++. -++-++-..
T Consensus 84 q~~~~GAd~Idl~~~s~d-p~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g--~~pLInSat 160 (319)
T PRK04452 84 CVEEYGADMITLHLISTD-PNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEG--ERCLLGSAE 160 (319)
T ss_pred HHHHhCCCEEEEECCCCC-cccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCC--CCCEEEECC
Confidence 335789888888654421 11001122223344444433323332 555533 57788888877542 235454443
Q ss_pred cCcccCCcchhhHHHHHHHhCCcEEEccccc
Q 021767 227 FSLLSMGENQLEIKNICDSLGIRLISYSPLG 257 (308)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 257 (308)
.. .. ..+.+.|+++|..+++.+|..
T Consensus 161 ~e-----n~-~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 ED-----NY-KKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred HH-----HH-HHHHHHHHHhCCeEEEEcHHH
Confidence 21 12 278999999999999977554
No 32
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=80.16 E-value=55 Score=31.05 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEecc
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKF 132 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~ 132 (308)
+..++.+.+..|+++|- ...|+...+.-.+-+.+.+.+.+.....+..++|||++-+
T Consensus 79 ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred CCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 34678888899999883 3467653333447788888875543345789999999987
No 33
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=79.30 E-value=34 Score=32.85 Aligned_cols=107 Identities=10% Similarity=0.056 Sum_probs=54.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCC-----CcccEEEecCCCCCCCCh-hHHH
Q 021767 106 EKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI-----EQIGIGQLHWSTANYAPP-QELA 179 (308)
Q Consensus 106 E~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~-----d~iDl~~lH~~~~~~~~~-~~~~ 179 (308)
|+.|-++|++..+ +.+.+=++|.|-+-. +-+-..++...+++.. ..+.++.+|.|+...... ....
T Consensus 66 ~~~L~~~i~~~~~-~~~p~~I~v~~tC~~-------~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~ 137 (428)
T cd01965 66 EDNLIEALKNLLS-RYKPDVIGVLTTCLT-------ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDN 137 (428)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEECCcch-------hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHH
Confidence 7788888876421 123444777777632 2222223333334432 235677888775442111 1122
Q ss_pred HHHHHHH-H------HHcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 180 LWNGLVA-M------YEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 180 ~~~~l~~-l------~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
++++|-+ + ++.++|.-||-++.+...+.++.+.++..|+++
T Consensus 138 a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v 185 (428)
T cd01965 138 AVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEP 185 (428)
T ss_pred HHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCE
Confidence 3333332 2 234668888877665444555555555566554
No 34
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=79.19 E-value=52 Score=30.26 Aligned_cols=155 Identities=10% Similarity=0.005 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+.++..+.++...+.|++.|=.-- +. ..+...=+++++. . .++-|.--... .++.+..+ .
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-----~~d~~~v~~vr~~----~--~~~~l~vDaN~---~~~~~~a~--~-- 191 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-----QIMHQLVKLRRLR----F--PQIPLVIDANE---SYDLQDFP--R-- 191 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-----chhHHHHHHHHHh----C--CCCcEEEECCC---CCCHHHHH--H--
Confidence 345666777888899999874321 11 1233333455542 2 23333333321 23555432 1
Q ss_pred HHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCc
Q 021767 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~ 229 (308)
+++|. ..++.++..| +.. +-++.+.+|++.-.+. ..|=|.++..++..+++. ..++++|+...-
T Consensus 192 -~~~l~--~~~~~~iEeP------~~~-~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~ 256 (324)
T TIGR01928 192 -LKELD--RYQLLYIEEP------FKI-DDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGR 256 (324)
T ss_pred -HHHHh--hCCCcEEECC------CCh-hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcch
Confidence 23332 2366666644 211 1357788888876655 557778888888877653 347888887665
Q ss_pred ccCCcchhhHHHHHHHhCCcEEEcccccccc
Q 021767 230 LSMGENQLEIKNICDSLGIRLISYSPLGLGM 260 (308)
Q Consensus 230 ~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 260 (308)
+--=..-..+...|+.+||.++..+.+.+|+
T Consensus 257 ~GGit~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 257 LGGLTEVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred hcCHHHHHHHHHHHHHcCCeEEEcceEcccH
Confidence 3211122378999999999998766565553
No 35
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=78.56 E-value=72 Score=31.52 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=59.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCCh-hHHHHHHHH
Q 021767 106 EKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPP-QELALWNGL 184 (308)
Q Consensus 106 E~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~-~~~~~~~~l 184 (308)
++.|-++|++..+ ..+.+-++|.+-+ ..+-+-..++...++++.+.++++.++.++...... ....+++++
T Consensus 70 ~~~L~~aI~~~~~-~~~P~~I~V~sTC-------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~l 141 (511)
T TIGR01278 70 QTRLVDTVRRVDD-RFKPDLIVVTPSC-------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQL 141 (511)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCC-------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHH
Confidence 7777788766421 1234446666665 445555556666666665568899999875432211 111122222
Q ss_pred HH-H----------HHcCCccEEEeecC---CHHHHHHHHHHHHHcCCCc
Q 021767 185 VA-M----------YEKGLVRAVGVSNY---GPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 185 ~~-l----------~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~~~ 220 (308)
-+ + .+.+.|.-||.++. ++..+.++.+.++..|+.+
T Consensus 142 v~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 142 VRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred HHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 11 1 13456888998763 4566666666666666544
No 36
>PRK07328 histidinol-phosphatase; Provisional
Probab=78.53 E-value=43 Score=29.87 Aligned_cols=170 Identities=13% Similarity=0.129 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCCceeCCcCCCCC--------CCCCchHHHHHHHHhhCCC--CCCCCCCEEEEeccCCCCCCCChHH
Q 021767 74 QLQQTFNLAVENGINLFDTADSYGTG--------RLNGKSEKLLGKFISEIPG--QKQVQNNIVIATKFAAYPWRLTPGQ 143 (308)
Q Consensus 74 ~~~~~l~~A~e~Gi~~~DtA~~Yg~~--------~~~g~sE~~lG~~L~~~~~--~~~~R~~v~i~tK~~~~~~~~~~~~ 143 (308)
...+.++.|.+.|+..+=.+++.... ...+....-+-..++.... .+..+=+|++--=++. -+ .
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~-----~~-~ 92 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADY-----HP-G 92 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEecc-----cC-C
Confidence 36688999999999987555543210 0011111122222221100 0011112333333321 11 2
Q ss_pred HHHHHHHHHHhhCCCcccEEEecCCCCC-C--C-------ChhHH----HHHHHHHHHHHcCCccEEEeecC--------
Q 021767 144 FVNACRASLARLQIEQIGIGQLHWSTAN-Y--A-------PPQEL----ALWNGLVAMYEKGLVRAVGVSNY-------- 201 (308)
Q Consensus 144 i~~~~e~sL~~L~~d~iDl~~lH~~~~~-~--~-------~~~~~----~~~~~l~~l~~~G~ir~iGvSn~-------- 201 (308)
....+++.|++...||+ |.-+|+.+.. . . ..+.. ..++.+.++.+.|.+.-||=-..
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~ 171 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRP 171 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCC
Confidence 23445556677666776 6777975321 0 0 01111 23346778888898887773221
Q ss_pred ---CHHHHHHHHHHHHHcCCCceeeeeccC--cccCCcchhhHHHHHHHhCCcEE
Q 021767 202 ---GPNQLVKIHDYLTARGVPLCSAQVQFS--LLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 202 ---~~~~l~~~~~~~~~~~~~~~~~Q~~~~--~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
..+.++++++.+...+..+.+|-..+. .-+..+ ...+++.|++.|+.++
T Consensus 172 ~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp-~~~il~~~~~~g~~it 225 (269)
T PRK07328 172 REDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYP-SPALLRACRERGIPVV 225 (269)
T ss_pred chhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCC-CHHHHHHHHHcCCCEE
Confidence 123456777777777776766643221 111122 2378999999998864
No 37
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=77.97 E-value=57 Score=30.04 Aligned_cols=141 Identities=14% Similarity=0.181 Sum_probs=81.2
Q ss_pred CCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCC--chHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHH
Q 021767 69 ESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNG--KSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVN 146 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g--~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~ 146 (308)
..+.++..++++.+.+.|+..|--. |. ++.- .-++++. .+++.. .-.++.|+|-.. .+.+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~t---GG-EPllr~dl~~li~-~i~~~~----~l~~i~itTNG~---------ll~~ 105 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLT---GG-EPLVRRGCDQLVA-RLGKLP----GLEELSLTTNGS---------RLAR 105 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---Cc-CCCccccHHHHHH-HHHhCC----CCceEEEEeChh---------HHHH
Confidence 4678899999999999999877543 32 2111 1122222 233311 112566776641 1222
Q ss_pred HHHHHHHhhCCCcccEEEecCCCCC-CC----ChhHHHHHHHHHHHHHcCC----ccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 147 ACRASLARLQIEQIGIGQLHWSTAN-YA----PPQELALWNGLVAMYEKGL----VRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 147 ~~e~sL~~L~~d~iDl~~lH~~~~~-~~----~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
.-+.|...|++++- +-|+..+.+ +. ......+++.++.+++.|. |..+.+...+.+++.++++.+...+
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 34456667777665 344443221 11 1234579999999999986 2334445578899999999888777
Q ss_pred CCceeeeeccCccc
Q 021767 218 VPLCSAQVQFSLLS 231 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~ 231 (308)
+.+. =++|-|+.
T Consensus 184 i~~~--~ie~mP~g 195 (329)
T PRK13361 184 LDIA--FIEEMPLG 195 (329)
T ss_pred CeEE--EEecccCC
Confidence 5433 34455543
No 38
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=77.42 E-value=27 Score=33.17 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHHHHcCCC-ceeCCcCCCCCCCCCchHHHHHHHH-hhCCCCCCCCCCEEE---EeccCCCCCCCChHHHH
Q 021767 71 MDSQLQQTFNLAVENGIN-LFDTADSYGTGRLNGKSEKLLGKFI-SEIPGQKQVQNNIVI---ATKFAAYPWRLTPGQFV 145 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~-~~DtA~~Yg~~~~~g~sE~~lG~~L-~~~~~~~~~R~~v~i---~tK~~~~~~~~~~~~i~ 145 (308)
+.+.=.+-++.|++.|-. ..|.+. .|+ -..+-+.+ +..+ ++-..|=| ..+......+.+.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Ggd-------l~~iR~~il~~s~---vpvGTVPiYqa~~~~~~~~~~mt~d~~~ 143 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GGD-------LDEIRKAILDAVP---VPVGTVPIYQAAEKVHGAVEDMDEDDMF 143 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CCC-------HHHHHHHHHHcCC---CCccCccHHHHHHHhcCChhhCCHHHHH
Confidence 334445668999999976 446653 344 33444443 3211 11110000 00000011345888888
Q ss_pred HHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeee
Q 021767 146 NACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQV 225 (308)
Q Consensus 146 ~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 225 (308)
+.+|+-.+ |=+|++-+|+- + ..+.++.++++|+ ..||.+-...-+..+... + -
T Consensus 144 ~~ie~qa~----dGVDfmTiH~G------i----~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~---~--------~ 196 (423)
T TIGR00190 144 RAIEKQAK----DGVDFMTIHAG------V----LLEYVERLKRSGR--ITGIVSRGGAILAAWMLH---H--------H 196 (423)
T ss_pred HHHHHHHH----hCCCEEEEccc------h----hHHHHHHHHhCCC--ccCeecCcHHHHHHHHHH---c--------C
Confidence 88887776 55788999952 1 4678999999994 568877777665554432 1 1
Q ss_pred ccCcccCCcchhhHHHHHHHhCCcEE
Q 021767 226 QFSLLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
.=||+...+ +++++.|+++++.+.
T Consensus 197 ~ENPlye~f--D~lLeI~~~yDVtlS 220 (423)
T TIGR00190 197 KENPLYKNF--DYILEIAKEYDVTLS 220 (423)
T ss_pred CcCchHHHH--HHHHHHHHHhCeeee
Confidence 224443222 289999999999984
No 39
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=76.98 E-value=28 Score=33.19 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=59.2
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
+.+.+.+.+.+|+-.+ |=+|++-+|+- + ..+.++.++++|+ ..||.+-...-+..+... +
T Consensus 139 ~mt~d~~~~~ie~qa~----~GVDfmTiHcG------i----~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~---n- 198 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK----DGVDFMTIHCG------V----TRETLERLKKSGR--IMGIVSRGGSFLAAWMLH---N- 198 (431)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccc------h----hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHH---c-
Confidence 4588888888887776 55788999952 1 3578899999985 568877777665554332 1
Q ss_pred CCceeeeeccCcccCCcchhhHHHHHHHhCCcEE
Q 021767 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
-.=||+...+ +++++.|+++++.+.
T Consensus 199 -------~~ENPlye~f--D~lLeI~~~yDVtlS 223 (431)
T PRK13352 199 -------NKENPLYEHF--DYLLEILKEYDVTLS 223 (431)
T ss_pred -------CCcCchHHHH--HHHHHHHHHhCeeee
Confidence 1234443322 289999999999984
No 40
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=76.97 E-value=53 Score=30.36 Aligned_cols=126 Identities=18% Similarity=0.106 Sum_probs=78.7
Q ss_pred CCcHHHHHHHHHHHHHcCCCceeCCcCCCC---------CC-CCCc----hHHHHHHHHhhCCCCCCCCCCEEEEeccCC
Q 021767 69 ESMDSQLQQTFNLAVENGINLFDTADSYGT---------GR-LNGK----SEKLLGKFISEIPGQKQVQNNIVIATKFAA 134 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~---------~~-~~g~----sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~ 134 (308)
+++.+.-.++.++|-+.|+-+|=|--.+.. +- -.+. ...+|-...+ .-+.++++|-..
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~-------~~kPiIlSTGma- 157 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK-------KGKPIILSTGMA- 157 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh-------cCCCEEEEcccc-
Confidence 356677889999999999998865544432 00 0000 1222222222 234677777764
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHH
Q 021767 135 YPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDY 212 (308)
Q Consensus 135 ~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 212 (308)
+.+.+.++++...+.=. .|+.+||+......|.++ --+++|..|++.= -.-||+|.|+..-+.-+...
T Consensus 158 -----~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed-~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 158 -----TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFED-VNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred -----cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHH-hhHHHHHHHHHHh-CCccccccCccchhHHHHHH
Confidence 56778888776555433 399999998766666543 2356666666655 44599999998866655554
No 41
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=76.82 E-value=10 Score=32.64 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=41.3
Q ss_pred HhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEee-cCCHHHHHHHHHHHHHcCCCceeeeeccC
Q 021767 153 ARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS-NYGPNQLVKIHDYLTARGVPLCSAQVQFS 228 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~ 228 (308)
..+|.|++=+++... ...+ ++.+ ..+.+.+.. .+.++.+||. |-+++.+.++.+. ..++++|++-+
T Consensus 18 ~~~GaD~iGfIf~~~-SpR~--V~~~-~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHG~ 84 (207)
T PRK13958 18 SQLPIDAIGFIHYEK-SKRH--QTIT-QIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-----TSINTIQLHGT 84 (207)
T ss_pred HHcCCCEEEEecCCC-Cccc--CCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-----CCCCEEEECCC
Confidence 459999999875442 1122 2222 223333322 3568899996 7778888877654 56899999753
No 42
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=76.33 E-value=20 Score=31.99 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=29.3
Q ss_pred hHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 238 EIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
..++.|++.|..++... ++.. .+. ... ........+.++.+.++|+++|+.+
T Consensus 98 ~~i~~a~~lG~~~v~~~---~~~~--~~~------~~~----~~~~~~~~~~l~~l~~~A~~~Gv~l 149 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLA---GYDV--YYE------EHD----EETRRRFREGLKEAVELAARAQVTL 149 (279)
T ss_pred HHHHHHHHhCCCEEEec---Cccc--ccC------cCC----HHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 67888889998887642 1100 000 000 1112334556678888888888764
No 43
>PRK06740 histidinol-phosphatase; Validated
Probab=75.90 E-value=67 Score=29.78 Aligned_cols=104 Identities=12% Similarity=0.127 Sum_probs=63.3
Q ss_pred HHHHHHHHhhCCCcccEEEecCCCCC-CC-Ch------------hHHHHHHHHHHHHHcCCccEEEee------cCC---
Q 021767 146 NACRASLARLQIEQIGIGQLHWSTAN-YA-PP------------QELALWNGLVAMYEKGLVRAVGVS------NYG--- 202 (308)
Q Consensus 146 ~~~e~sL~~L~~d~iDl~~lH~~~~~-~~-~~------------~~~~~~~~l~~l~~~G~ir~iGvS------n~~--- 202 (308)
..+++.|.....||+ +.-+|+.+.. +. +. .....++.+.++.+.|++..||=- |+.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 345556666677776 6777875311 11 10 012356788889999998888722 121
Q ss_pred ---HHHHHHHHHHHHHcCCCceeeee-ccC--cccCCcchhhHHHHHHHhCCcEE
Q 021767 203 ---PNQLVKIHDYLTARGVPLCSAQV-QFS--LLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 203 ---~~~l~~~~~~~~~~~~~~~~~Q~-~~~--~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
.+.++++++.+...+..+.+|-. .+. ..+..+. ..+++.|++.|+.++
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~-~~il~~~~e~Gv~~t 288 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPS-PLFLQVLAKHEVPIT 288 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcC-HHHHHHHHHCCCeEE
Confidence 23677777777778877777753 121 1111122 378999999999875
No 44
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=75.54 E-value=66 Score=29.52 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=90.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHH
Q 021767 68 QESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNA 147 (308)
Q Consensus 68 ~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~ 147 (308)
...+.++..++++.+.+.|++.+.-.. |.|-..-.-.+++ +.+++.. .-.++.|+|-... +.+
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li-~~i~~~~----~~~~i~itTNG~l---------l~~- 109 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDII-AALAALP----GIRDLALTTNGYL---------LAR- 109 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHH-HHHHhcC----CCceEEEEcCchh---------HHH-
Confidence 346778999999999999998776432 2211111122222 2233310 1235777776521 112
Q ss_pred HHHHHHhhCCCcccEEEecCCCCC-C----CChhHHHHHHHHHHHHHcCC----ccEEEeecCCHHHHHHHHHHHHHcCC
Q 021767 148 CRASLARLQIEQIGIGQLHWSTAN-Y----APPQELALWNGLVAMYEKGL----VRAVGVSNYGPNQLVKIHDYLTARGV 218 (308)
Q Consensus 148 ~e~sL~~L~~d~iDl~~lH~~~~~-~----~~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~~~ 218 (308)
.-+.|...|++.+- +-+|..+++ + .....+.++++++.+++.|. |..+.+-+.+.+++.++.+.++..++
T Consensus 110 ~~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 110 RAAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred HHHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 22334455655443 333433211 0 11234568999999999986 33444446677889998888876654
Q ss_pred CceeeeeccCcccCC--------cchhhHHHHHHHhCCcEE
Q 021767 219 PLCSAQVQFSLLSMG--------ENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 219 ~~~~~Q~~~~~~~~~--------~~~~~l~~~~~~~gi~v~ 251 (308)
.+.-++|.++... ....++++..+++|+.+.
T Consensus 189 --~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 189 --QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred --eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 3444555554322 112467888888865543
No 45
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=74.57 E-value=57 Score=28.28 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=66.8
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCC-cCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHH
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTA-DSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA-~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~ 148 (308)
.+.++..++++...+.||..|+.. +..+. ...+.+.+..+.. +. ..+.+.+ ....+.++..+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-----~~~~~v~~~~~~~-----~~--~~~~~~~-----~~~~~~i~~~~ 73 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-----DDFEQVRRLREAL-----PN--ARLQALC-----RANEEDIERAV 73 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-----HHHHHHHHHHHHH-----HS--SEEEEEE-----ESCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-----HHHHHhhhhhhhh-----cc--cccceee-----eehHHHHHHHH
Confidence 456888899999999999999999 33332 1233344444331 22 2333333 12455666666
Q ss_pred HHHHHhhCCCcccEEEecCCC-----CCCCC-hhHHHHHHHHHHHHHcCCccEEEe---ecCCHHHHHHHHHHHHHcC
Q 021767 149 RASLARLQIEQIGIGQLHWST-----ANYAP-PQELALWNGLVAMYEKGLVRAVGV---SNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 149 e~sL~~L~~d~iDl~~lH~~~-----~~~~~-~~~~~~~~~l~~l~~~G~ir~iGv---Sn~~~~~l~~~~~~~~~~~ 217 (308)
+.. ...|.+.+.++.-=++. ...+. ...+.+.+.++.+++.|.--.+++ +.++++.+.++.+.+...+
T Consensus 74 ~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g 150 (237)
T PF00682_consen 74 EAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG 150 (237)
T ss_dssp HHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT
T ss_pred Hhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC
Confidence 533 45677776654322110 00000 001234455666667777666665 3345555555555544443
No 46
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=74.23 E-value=66 Score=29.88 Aligned_cols=141 Identities=20% Similarity=0.157 Sum_probs=79.2
Q ss_pred CCcHHHHHHHHHHHHHcCCCceeCCcCCC---------CCC-CCCc----hHHHHHHHHhhCCCCCCCCCCEEEEeccCC
Q 021767 69 ESMDSQLQQTFNLAVENGINLFDTADSYG---------TGR-LNGK----SEKLLGKFISEIPGQKQVQNNIVIATKFAA 134 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg---------~~~-~~g~----sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~ 134 (308)
+.+.+....+.+++-+.|+.+|=|.-.-. .+- -.|. .-.+|- .+.+ ....|+|+|-..
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~-~~A~------~gkPvilStGma- 143 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLK-KIAR------FGKPVILSTGMA- 143 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHH-HHHh------cCCcEEEECCCC-
Confidence 35678888999999999999885443211 100 0000 111221 1111 234566666552
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHH
Q 021767 135 YPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLT 214 (308)
Q Consensus 135 ~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 214 (308)
+.+.++.+++...+. |.+.-|+.+||+......+.+. --++++..|++.=. .-||+|.|+.....-+...
T Consensus 144 -----tl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~-~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAv-- 213 (329)
T TIGR03569 144 -----TLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFED-VNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAV-- 213 (329)
T ss_pred -----CHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCccc-CCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHH--
Confidence 788899998887643 4321259999987543333322 12566666666543 4699999987643333332
Q ss_pred HcCCCceeeeeccCc
Q 021767 215 ARGVPLCSAQVQFSL 229 (308)
Q Consensus 215 ~~~~~~~~~Q~~~~~ 229 (308)
..| -+++.-++.+
T Consensus 214 alG--A~iIEkH~tl 226 (329)
T TIGR03569 214 ALG--ATVIEKHFTL 226 (329)
T ss_pred HcC--CCEEEeCCCh
Confidence 233 2366666655
No 47
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=74.18 E-value=79 Score=30.43 Aligned_cols=119 Identities=11% Similarity=0.071 Sum_probs=55.8
Q ss_pred eCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCC-CcccEEEecCCC
Q 021767 91 DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI-EQIGIGQLHWST 169 (308)
Q Consensus 91 DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~-d~iDl~~lH~~~ 169 (308)
+..-+||. |+.|-++|++..+ ..+.+=++|.|-+-. ..--+++..-+++.-++... ..+.++.++.|+
T Consensus 62 E~d~V~Gg-------~~~L~~ai~~~~~-~~~p~~I~v~ttC~~---~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpg 130 (435)
T cd01974 62 EDAAVFGG-------QNNLIDGLKNAYA-VYKPDMIAVSTTCMA---EVIGDDLNAFIKNAKNKGSIPADFPVPFANTPS 130 (435)
T ss_pred CCceEECc-------HHHHHHHHHHHHH-hcCCCEEEEeCCchH---hhhhccHHHHHHHHHHhccCCCCCeEEEecCCC
Confidence 34457886 7888888876421 123445777777632 11122233333322222211 147889999775
Q ss_pred CCCCCh-hHHHHHHHHH-HHH-------HcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 170 ANYAPP-QELALWNGLV-AMY-------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 170 ~~~~~~-~~~~~~~~l~-~l~-------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
..-+.. ....++++|- .+. +.++|.-||-.+...+.+.++.+.++..|+.+
T Consensus 131 f~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~ 190 (435)
T cd01974 131 FVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDY 190 (435)
T ss_pred CccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCE
Confidence 432111 1122333332 222 23346556522222222555555555666554
No 48
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=73.90 E-value=32 Score=30.28 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=62.1
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcC-CccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG-LVRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
++.+...+-++ .|.++|+++|++-..-.+.. .|.. .+.++.++++++.+ .++...++.-..+.++.+.+ .+
T Consensus 16 ~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~--~p~~-~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~----~g 87 (265)
T cd03174 16 FSTEDKLEIAE-ALDEAGVDSIEVGSGASPKA--VPQM-EDDWEVLRAIRKLVPNVKLQALVRNREKGIERALE----AG 87 (265)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEeccCcCccc--cccC-CCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHh----CC
Confidence 45555555554 47789999999877653311 1221 23578888999988 57766776544555554433 33
Q ss_pred CCceeeeeccCccc--------CCc-----chhhHHHHHHHhCCcEEEc
Q 021767 218 VPLCSAQVQFSLLS--------MGE-----NQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~--------~~~-----~~~~l~~~~~~~gi~v~a~ 253 (308)
++.+++.+..-+ +.. .-...+++++++|+.+...
T Consensus 88 --~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 134 (265)
T cd03174 88 --VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS 134 (265)
T ss_pred --cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 455555554431 111 1135688889999887543
No 49
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.51 E-value=52 Score=29.28 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=11.7
Q ss_pred hHHHHHHHhCCcEEEc
Q 021767 238 EIKNICDSLGIRLISY 253 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~ 253 (308)
..++.|++.|+.++..
T Consensus 103 ~~i~~a~~lG~~~i~~ 118 (283)
T PRK13209 103 KAIQLAQDLGIRVIQL 118 (283)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 5677888888887764
No 50
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.15 E-value=11 Score=31.49 Aligned_cols=55 Identities=24% Similarity=0.189 Sum_probs=33.8
Q ss_pred hhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 237 LEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 237 ~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
...+++|++.|+..+...+-..+.... .. .....+...+.++.+.++|+++|+++
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~---------~~----~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPE---------DD----TEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTT---------SS----HHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCCceeecCcccccccC---------CC----HHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 367999999999988755332000000 00 11123445667788999999999764
No 51
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=73.09 E-value=71 Score=30.89 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=60.4
Q ss_pred eCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCC-CCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCC
Q 021767 91 DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQ-NNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWST 169 (308)
Q Consensus 91 DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R-~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~ 169 (308)
+..-+||. |+.|-++|++..+ ..++ +=|+|.|-+.. ...-+++..-+++.-++++ +.++.+|.++
T Consensus 94 E~d~V~Gg-------~~~L~~aI~~~~~-~~~p~~~I~V~~tC~~---~liGdDi~~v~~~~~~~~~---~pvi~v~t~g 159 (443)
T TIGR01862 94 ESDIVFGG-------EKKLKKLIHEAFT-EFPLIKAISVYATCPT---GLIGDDIEAVAKEVSKEIG---KDVVAVNCPG 159 (443)
T ss_pred ccceeeCc-------HHHHHHHHHHHHH-hCCccceEEEECCChH---HHhccCHHHHHHHHHHhcC---CCEEEEecCC
Confidence 33456886 7788888875431 1233 55777777632 1122233333333333443 6899999886
Q ss_pred CCCCCh--hHHHHHHH-HHHHH--------HcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 170 ANYAPP--QELALWNG-LVAMY--------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 170 ~~~~~~--~~~~~~~~-l~~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
...... ....+.++ ++.+. +.++|.-||-.++ +..++++.+.++..|+++
T Consensus 160 f~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v 220 (443)
T TIGR01862 160 FAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQV 220 (443)
T ss_pred ccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeE
Confidence 442111 11122232 33343 2567888886554 334555555566666554
No 52
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=73.00 E-value=82 Score=29.41 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcC-CCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHH
Q 021767 73 SQLQQTFNLAVENG-INLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRAS 151 (308)
Q Consensus 73 ~~~~~~l~~A~e~G-i~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~s 151 (308)
++..+.+..+++.| ++.|=.-- |.. +.....+.+ +++++. -.+++.|.--... .++.+...+- -+.
T Consensus 144 ~~~~~~~~~~~~~G~f~~~KiKv--g~~-~~~~d~~~v-~avr~~-----~g~~~~l~iDaN~---~~~~~~A~~~-~~~ 210 (365)
T cd03318 144 ERDIAEAEEMLEAGRHRRFKLKM--GAR-PPADDLAHV-EAIAKA-----LGDRASVRVDVNQ---AWDESTAIRA-LPR 210 (365)
T ss_pred HHHHHHHHHHHhCCCceEEEEEe--CCC-ChHHHHHHH-HHHHHH-----cCCCcEEEEECCC---CCCHHHHHHH-HHH
Confidence 34445566677888 88875421 110 000112223 444442 2234444444321 2244432221 233
Q ss_pred HHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcc
Q 021767 152 LARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLL 230 (308)
Q Consensus 152 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~ 230 (308)
|+.+ ++.++..|- +.+ -++.+.+|+++..+. ..|=+-++..++.++++. -.++++|+....+
T Consensus 211 l~~~-----~~~~iEeP~----~~~---~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~ 273 (365)
T cd03318 211 LEAA-----GVELIEQPV----PRE---NLDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKS 273 (365)
T ss_pred HHhc-----CcceeeCCC----Ccc---cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeeccc
Confidence 3333 455555442 111 267788888876665 556666778888877654 2367788765543
Q ss_pred cCCcchhhHHHHHHHhCCcEEEcc
Q 021767 231 SMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 231 ~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
---..-.++..+|+++||.++..+
T Consensus 274 GGit~~~~~~~~a~~~gi~~~~~~ 297 (365)
T cd03318 274 GGLRRAQKVAAIAEAAGIALYGGT 297 (365)
T ss_pred CCHHHHHHHHHHHHHcCCceeecC
Confidence 211122478999999999988643
No 53
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=72.91 E-value=96 Score=30.16 Aligned_cols=119 Identities=11% Similarity=0.096 Sum_probs=61.5
Q ss_pred eCCcCCCCCCCCCchHHHHHHHHhhCCCCCCC-CCCEEEEeccCCCCCCCChHHHHHHHHHHHH-hhCCCcccEEEecCC
Q 021767 91 DTADSYGTGRLNGKSEKLLGKFISEIPGQKQV-QNNIVIATKFAAYPWRLTPGQFVNACRASLA-RLQIEQIGIGQLHWS 168 (308)
Q Consensus 91 DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~-R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~-~L~~d~iDl~~lH~~ 168 (308)
+..-+||. |+.|-++|+...+ ..+ .+=++|.|-+...--+-+.+.+-+.+++-++ +..--.+.++.+|.|
T Consensus 63 E~d~VfGG-------~~~L~~~I~~~~~-~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tp 134 (454)
T cd01973 63 EDSAVFGG-------AKRVEEGVLVLAR-RYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTP 134 (454)
T ss_pred CCceEECc-------HHHHHHHHHHHHH-hcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCC
Confidence 44457886 8888888876431 011 2347787777431111133333333333221 111014688899988
Q ss_pred CCCCCChhHHHHHHHHHHHHH--------cCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 169 TANYAPPQELALWNGLVAMYE--------KGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~--------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
+..- . ...+...+++.+.+ +++|.-||-.+ ++..+.++.+.++..|+.+
T Consensus 135 gF~G-s-~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 135 SFKG-S-MVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred CcCC-C-HHHHHHHHHHHHHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCE
Confidence 6442 2 12233344444332 46688887443 4556666666666666543
No 54
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=72.73 E-value=54 Score=31.46 Aligned_cols=116 Identities=10% Similarity=0.061 Sum_probs=62.5
Q ss_pred CCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhC-CCcccEEEecCCCC
Q 021767 92 TADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQ-IEQIGIGQLHWSTA 170 (308)
Q Consensus 92 tA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~-~d~iDl~~lH~~~~ 170 (308)
..-.||. |+.+-++|++..+ +.+.+=++|.|-+... .--+++..-+++.-++.. ...+.++.+|.|+.
T Consensus 59 ~d~VfGg-------~~~L~~~i~~~~~-~~~p~~I~V~ttc~~e---iIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf 127 (417)
T cd01966 59 VSTILGG-------GENLEEALDTLAE-RAKPKVIGLLSTGLTE---TRGEDIAGALKQFRAEHPELADVPVVYVSTPDF 127 (417)
T ss_pred CcEEECC-------HHHHHHHHHHHHH-hcCCCEEEEECCCccc---ccccCHHHHHHHHHhhccccCCCeEEEecCCCC
Confidence 3346886 7777777766321 1234557777776432 122233333333222310 01467888998754
Q ss_pred CCCChhHHHHHHHHHHH------------HHcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 171 NYAPPQELALWNGLVAM------------YEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 171 ~~~~~~~~~~~~~l~~l------------~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
.- .. ..+...+++.+ ++.++|.-||-++.++..+.++.+.++..|+.+
T Consensus 128 ~g-~~-~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v 187 (417)
T cd01966 128 EG-SL-EDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEP 187 (417)
T ss_pred CC-cH-HHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 32 11 22222333222 235668888866666777778777777777654
No 55
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=72.45 E-value=71 Score=28.46 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEE-ecCCCCCCCChh--HHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHc
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQ-LHWSTANYAPPQ--ELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~-lH~~~~~~~~~~--~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~ 216 (308)
+++.+.+..++.+ .-|.++||+-- --+|+......+ .+.+...++.+++.-.+ -|.+=+++++.++.+++.
T Consensus 21 ~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~---- 94 (257)
T TIGR01496 21 SVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEA---- 94 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHc----
Confidence 5666666666554 46899999942 222332211111 12355666667666223 378888999999888764
Q ss_pred CCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcc
Q 021767 217 GVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 217 ~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
|. ..+|-+.. .. ..++++.++++|..++.+.
T Consensus 95 G~-~iINsis~--~~----~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 95 GA-DIINDVSG--GQ----DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CC-CEEEECCC--CC----CchhHHHHHHcCCcEEEEe
Confidence 33 33443332 21 2378999999999998843
No 56
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=72.16 E-value=29 Score=29.94 Aligned_cols=74 Identities=27% Similarity=0.250 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEee-cCCHHHHHHHHHHHHHcCC
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS-NYGPNQLVKIHDYLTARGV 218 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~ 218 (308)
+.+.++.+ ..+|.|++=+++... ...+ ++.+ ..+.+.+.. .+.++.+||. |-+++.+.++.+. .
T Consensus 12 ~~eda~~~-----~~~Gad~iGfI~~~~-S~R~--V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-----~ 76 (210)
T PRK01222 12 TPEDAEAA-----AELGADAIGFVFYPK-SPRY--VSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-----V 76 (210)
T ss_pred cHHHHHHH-----HHcCCCEEEEccCCC-CCCc--CCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-----c
Confidence 44554444 359999998864332 1122 2222 223333322 3568999987 5567777776554 5
Q ss_pred CceeeeeccC
Q 021767 219 PLCSAQVQFS 228 (308)
Q Consensus 219 ~~~~~Q~~~~ 228 (308)
.++++|++-+
T Consensus 77 ~~d~vQLHg~ 86 (210)
T PRK01222 77 PLDLLQLHGD 86 (210)
T ss_pred CCCEEEECCC
Confidence 6899999753
No 57
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=72.13 E-value=75 Score=30.87 Aligned_cols=117 Identities=14% Similarity=0.054 Sum_probs=59.3
Q ss_pred CcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCC
Q 021767 93 ADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANY 172 (308)
Q Consensus 93 A~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~ 172 (308)
.-+||. |+.|-++|++..+ ..+.+=++|.|-+-..--+-+.+.+-+.+++-..+ ...+.++.++.|+..-
T Consensus 71 d~VfGg-------~~~L~~aI~~~~~-~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~--~~~~pvi~v~tpgF~g 140 (455)
T PRK14476 71 TTILGG-------DENVEEAILNICK-KAKPKIIGLCTTGLTETRGDDVAGALKEIRARHPE--LADTPIVYVSTPDFKG 140 (455)
T ss_pred ceEeCC-------HHHHHHHHHHHHH-hhCCCEEEEeCcchHhhhhccHHHHHHHHHhhccc--cCCCeEEEecCCCCCC
Confidence 347886 7888888876421 02345566666652210011333333333222111 1135788888875432
Q ss_pred CCh--hHHHHHHHHHH-HH--------HcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 173 APP--QELALWNGLVA-MY--------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 173 ~~~--~~~~~~~~l~~-l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
.. ....++++|.+ +. +.++|.-||-+|+++..+.++.+.++..|+.+
T Consensus 141 -~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 141 -ALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred -cHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 21 11123333322 21 34568888766666666677777666666654
No 58
>TIGR03586 PseI pseudaminic acid synthase.
Probab=71.91 E-value=78 Score=29.39 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=76.8
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCCcCCCC---------CC-CCCc----hHHHHHHHHhhCCCCCCCCCCEEEEeccCCC
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTADSYGT---------GR-LNGK----SEKLLGKFISEIPGQKQVQNNIVIATKFAAY 135 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~---------~~-~~g~----sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~ 135 (308)
.+.+...++.+++-+.|+.++=|.-.-.. +- -.|. .-.+| +.+.+ ....|+|+|-..
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL-~~va~------~gkPvilstG~~-- 144 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLI-RYVAK------TGKPIIMSTGIA-- 144 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHH-HHHHh------cCCcEEEECCCC--
Confidence 45677778888999999998854432211 00 0000 01111 11111 234455555442
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHH
Q 021767 136 PWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTA 215 (308)
Q Consensus 136 ~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 215 (308)
+.+.+..+++...+ -| .-|+.++|+......+... --+++|..|++.=. .-||+|.|+.....-+... .
T Consensus 145 ----t~~Ei~~Av~~i~~-~g--~~~i~LlhC~s~YP~~~~~-~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAv--a 213 (327)
T TIGR03586 145 ----TLEEIQEAVEACRE-AG--CKDLVLLKCTSSYPAPLED-ANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAV--A 213 (327)
T ss_pred ----CHHHHHHHHHHHHH-CC--CCcEEEEecCCCCCCCccc-CCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHH--H
Confidence 67888888887654 23 2479999987543333222 12566777776554 3699999986653333332 2
Q ss_pred cCCCceeeeeccCc
Q 021767 216 RGVPLCSAQVQFSL 229 (308)
Q Consensus 216 ~~~~~~~~Q~~~~~ 229 (308)
.|. .++.-++++
T Consensus 214 ~GA--~iIEkH~tl 225 (327)
T TIGR03586 214 LGA--CVIEKHFTL 225 (327)
T ss_pred cCC--CEEEeCCCh
Confidence 332 466666665
No 59
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=71.58 E-value=26 Score=30.30 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=54.3
Q ss_pred ccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhh
Q 021767 160 IGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLE 238 (308)
Q Consensus 160 iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~ 238 (308)
.++.++..|- +.+ -++.+.+|.+...+. ..+=|-++...+.++++. ..++++|+..+.+---..-.+
T Consensus 120 ~~i~~iEeP~----~~~---d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~ 187 (229)
T cd00308 120 YGLAWIEEPC----APD---DLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRR 187 (229)
T ss_pred cCCCeEECCC----Ccc---CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHH
Confidence 4666666442 111 256777888887666 334455566666555442 347888887655421112237
Q ss_pred HHHHHHHhCCcEEEccccccc
Q 021767 239 IKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 239 l~~~~~~~gi~v~a~spl~~G 259 (308)
+.++|+++|+.++..+.+.++
T Consensus 188 i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 188 AADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHHHcCCEEeecCCCCCH
Confidence 889999999999987666544
No 60
>PRK05588 histidinol-phosphatase; Provisional
Probab=71.24 E-value=73 Score=28.08 Aligned_cols=166 Identities=12% Similarity=0.191 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHcCCCceeCCcCCCCC-C-C--CC-chHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHH
Q 021767 73 SQLQQTFNLAVENGINLFDTADSYGTG-R-L--NG-KSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNA 147 (308)
Q Consensus 73 ~~~~~~l~~A~e~Gi~~~DtA~~Yg~~-~-~--~g-~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~ 147 (308)
....+.++.|.+.|+..+ .+++...+ + . .. .-+..+ +.++++ ...+|++---++. .++ ....
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~-----~~~~I~~GiE~~~-----~~~-~~~~ 82 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKY-----RNNKLLLGIELGM-----EKD-LIEE 82 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHH-----hcCCcceEEEecc-----cCC-CHHH
Confidence 346788999999999988 77664221 0 0 00 111222 222222 1134444444422 222 3455
Q ss_pred HHHHHHhhCCCcccEEEecCCCCCCC-------ChhH----HHHHHHHHHHHH-cCCccEEE---ee----cC-------
Q 021767 148 CRASLARLQIEQIGIGQLHWSTANYA-------PPQE----LALWNGLVAMYE-KGLVRAVG---VS----NY------- 201 (308)
Q Consensus 148 ~e~sL~~L~~d~iDl~~lH~~~~~~~-------~~~~----~~~~~~l~~l~~-~G~ir~iG---vS----n~------- 201 (308)
+++.|++...||+ +.-+|+.+.... ..+. +..++.+.++.+ .+++.-|| .. .+
T Consensus 83 ~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~ 161 (255)
T PRK05588 83 NKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYY 161 (255)
T ss_pred HHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccH
Confidence 6777777777776 688897531100 0011 224567777776 46555544 11 00
Q ss_pred --CHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 202 --GPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 202 --~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
-...++++++.+.+.+..+.+|-..+..-........+++.|++.|+.++.
T Consensus 162 ~~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~ 214 (255)
T PRK05588 162 DEFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYIT 214 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEE
Confidence 134456677777777776776653221100011223678888888887543
No 61
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=71.21 E-value=76 Score=28.28 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEe-cCCCCCCCCh--hHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHc
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQL-HWSTANYAPP--QELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~l-H~~~~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~ 216 (308)
+.+.+.+..++.+ +-|.|+||+-.- -+|+...... +.+.+...++.+++.-.+- |.|=+++++.++++++.
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~---- 95 (257)
T cd00739 22 SLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA---- 95 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh----
Confidence 5555555555544 458999998643 2343221111 1123444566677663443 78889999999988774
Q ss_pred CCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHH
Q 021767 217 GVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEI 296 (308)
Q Consensus 217 ~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 296 (308)
| ...+|-+ +... .+.++++.++++|..++.+-. .|. +... .....|....++....++..-+.
T Consensus 96 G-~~iINdi--sg~~---~~~~~~~l~~~~~~~vV~m~~--~g~------p~~~---~~~~~~~~~~~~~~~~~~~~i~~ 158 (257)
T cd00739 96 G-ADIINDV--SGGS---DDPAMLEVAAEYGAPLVLMHM--RGT------PKTM---QENPYYEDVVDEVLSFLEARLEA 158 (257)
T ss_pred C-CCEEEeC--CCCC---CChHHHHHHHHcCCCEEEECC--CCC------Cccc---ccCCCcccHHHHHHHHHHHHHHH
Confidence 3 2334433 2221 113889999999999998432 121 0000 00011222223333445566677
Q ss_pred HHHhCCCccc
Q 021767 297 AERRGKTIPQ 306 (308)
Q Consensus 297 a~~~g~s~aq 306 (308)
|+++|++..+
T Consensus 159 ~~~~Gi~~~~ 168 (257)
T cd00739 159 AESAGVARNR 168 (257)
T ss_pred HHHcCCCHHH
Confidence 8888876544
No 62
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=70.14 E-value=86 Score=29.19 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHH
Q 021767 72 DSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRAS 151 (308)
Q Consensus 72 ~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~s 151 (308)
.++..+.++..++.|++.|=.--.... -..+...=+++++. ..+++.|..-.. ..++.+...+-++ .
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~----~~~d~~~v~air~~-----~g~~~~l~vDaN---~~~~~~~A~~~~~-~ 208 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPT----ADEDLAVVRSIRQA-----VGDGVGLMVDYN---QSLTVPEAIERGQ-A 208 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCC----hHhHHHHHHHHHHh-----hCCCCEEEEeCC---CCcCHHHHHHHHH-H
Confidence 355666677777889987643211111 01122333455552 234566655542 1235554333322 2
Q ss_pred HHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcc
Q 021767 152 LARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLL 230 (308)
Q Consensus 152 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~ 230 (308)
|+.+ ++.++..|- +.+ -++.+.+|++.--|. ..|=+.++..++..+++. -.++++|+..+-+
T Consensus 209 l~~~-----~i~~iEeP~----~~~---d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~ 271 (355)
T cd03321 209 LDQE-----GLTWIEEPT----LQH---DYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKI 271 (355)
T ss_pred HHcC-----CCCEEECCC----CCc---CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhh
Confidence 3333 555666442 111 256777787765432 456666788888877653 2478888876654
Q ss_pred cCCcchhhHHHHHHHhCCcEEEc
Q 021767 231 SMGENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 231 ~~~~~~~~l~~~~~~~gi~v~a~ 253 (308)
---.+-.++.++|+.+|+.++..
T Consensus 272 GGit~~~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 272 GGVTGWLRASALAEQAGIPMSSH 294 (355)
T ss_pred CCHHHHHHHHHHHHHcCCeeccc
Confidence 21112247899999999998643
No 63
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=70.05 E-value=29 Score=36.77 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHHHHhhC--------------------------CCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcC
Q 021767 138 RLTPGQFVNACRASLARLQ--------------------------IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG 191 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G 191 (308)
++...++++.++..|+.++ +....+++|..|....+|.....+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4466788888899888776 45678899998877778877788999999999999
Q ss_pred CccEEEeecCCHHHHHHHHHH
Q 021767 192 LVRAVGVSNYGPNQLVKIHDY 212 (308)
Q Consensus 192 ~ir~iGvSn~~~~~l~~~~~~ 212 (308)
+ +|=+++|+-++.+.+...
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 9 888999998887776544
No 64
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=69.73 E-value=1.1e+02 Score=30.39 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=56.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCCh-hHHHHHHHH
Q 021767 106 EKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPP-QELALWNGL 184 (308)
Q Consensus 106 E~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~-~~~~~~~~l 184 (308)
|+.|-++|++..+ ..+.+-|+|.|-+ ..+-|-..++...++++. .++++.++.++...... ....++.++
T Consensus 70 ~ekL~~aI~~~~~-~~~P~~I~V~sTC-------~seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~~al~~l 140 (519)
T PRK02910 70 AELLKDTLRRADE-RFQPDLIVVGPSC-------TAELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAADETFYQL 140 (519)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCc-------HHHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHHHHHHHHH
Confidence 6667777765321 0123345676666 344555555555555654 36799999885432211 111122222
Q ss_pred H-HHH-----------HcCCccEEEeecC---CHHHHHHHHHHHHHcCCCc
Q 021767 185 V-AMY-----------EKGLVRAVGVSNY---GPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 185 ~-~l~-----------~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~~~ 220 (308)
- .+. +.+.|.-||.++. ++..+.++.+.+...|+.+
T Consensus 141 v~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~v 191 (519)
T PRK02910 141 VRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDV 191 (519)
T ss_pred HHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeE
Confidence 2 221 2345888888652 4566677766666666543
No 65
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=69.58 E-value=57 Score=28.90 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=11.7
Q ss_pred hHHHHHHHhCCcEEEc
Q 021767 238 EIKNICDSLGIRLISY 253 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~ 253 (308)
..++.|++.|+..+..
T Consensus 98 ~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 98 KAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 5677788888877753
No 66
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=69.46 E-value=82 Score=27.95 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEe-cCCCCCCCCh--hHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHc
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQL-HWSTANYAPP--QELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~l-H~~~~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~ 216 (308)
+.+.+.+..++.+ .-|.|+||+-.- -+|+....+. +.+.+...++.+++.-.+- |.|-+++++.++.+++.
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~---- 95 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKA---- 95 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHh----
Confidence 5666666666554 468999999643 3343211111 2234666777777663343 88999999999988775
Q ss_pred CCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccc
Q 021767 217 GVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSP 255 (308)
Q Consensus 217 ~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 255 (308)
..+.+|-+ +... .+.++++.++++|..++.+..
T Consensus 96 -g~~iINdi--s~~~---~~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 96 -GADIINDV--SGGR---GDPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred -CCCEEEeC--CCCC---CChHHHHHHHHcCCCEEEECc
Confidence 23334433 2221 113889999999999987653
No 67
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=68.95 E-value=64 Score=27.88 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=51.0
Q ss_pred HhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC-ccEEEee-cCCHHHHHHHHHHHHHcCCCceeeeeccCcc
Q 021767 153 ARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVS-NYGPNQLVKIHDYLTARGVPLCSAQVQFSLL 230 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~ 230 (308)
..+|.||+-+++.-. ...+.. .+...++.+.-. ++.+||. |.+.+.+.++++. ..++++|++-.
T Consensus 19 ~~~gad~iG~If~~~-SpR~Vs------~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-----~~ld~VQlHG~-- 84 (208)
T COG0135 19 AKAGADYIGFIFVPK-SPRYVS------PEQAREIASAVPKVKVVGVFVNESIEEILEIAEE-----LGLDAVQLHGD-- 84 (208)
T ss_pred HHcCCCEEEEEEcCC-CCCcCC------HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-----cCCCEEEECCC--
Confidence 358999988776652 112222 234444444444 8899987 5567777777664 57999999764
Q ss_pred cCCcchhhHHHHHHHhC-CcEE
Q 021767 231 SMGENQLEIKNICDSLG-IRLI 251 (308)
Q Consensus 231 ~~~~~~~~l~~~~~~~g-i~v~ 251 (308)
+..+.++..+++. +.++
T Consensus 85 ----e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 85 ----EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred ----CCHHHHHHHHhhcCCceE
Confidence 2236677777664 5554
No 68
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=68.94 E-value=51 Score=29.55 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=54.4
Q ss_pred CCChHHHHHHHHHHHHhhC--------------------------CCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcC
Q 021767 138 RLTPGQFVNACRASLARLQ--------------------------IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG 191 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G 191 (308)
+.....+++.++..|+|+. +...||+.|..|-...+|+..+-+-+++-+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 4467888888888888886 24456666665544456665555667888999999
Q ss_pred CccEEEeecCCHHHHHHHHHH
Q 021767 192 LVRAVGVSNYGPNQLVKIHDY 212 (308)
Q Consensus 192 ~ir~iGvSn~~~~~l~~~~~~ 212 (308)
. .|=+|+|.-++++++.+.
T Consensus 181 a--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred C--EEEEecchHHHHHHHhhh
Confidence 8 788999999999888664
No 69
>PRK00208 thiG thiazole synthase; Reviewed
Probab=68.82 E-value=85 Score=27.90 Aligned_cols=106 Identities=11% Similarity=0.036 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
..+.+...+-.+-..+-+++++|-|=.+..+ .+..-+..+++++.++|.++|.+- +=+|+-++....++.+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~--~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~----- 143 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDD--KTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA----- 143 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCC--CCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-----
Confidence 4577877777888888889998887777633 333335567899999999999865 44666677776666553
Q ss_pred CCceeeeeccCcccC--CcchhhHHHHHHHh-CCcEEE
Q 021767 218 VPLCSAQVQFSLLSM--GENQLEIKNICDSL-GIRLIS 252 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~~--~~~~~~l~~~~~~~-gi~v~a 252 (308)
.+++++.--.++-. .....++++..++. ++.|++
T Consensus 144 -G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIv 180 (250)
T PRK00208 144 -GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIV 180 (250)
T ss_pred -CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 34555331122221 11123567777664 788776
No 70
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=68.22 E-value=99 Score=28.42 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHH
Q 021767 69 ESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~ 148 (308)
..+.++..++++.+.+.|++.|.-.. |.|-..-.-.+++.. +++.. .-.++.|+|.... +.+ .
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~l~~li~~-i~~~~----gi~~v~itTNG~l---------l~~-~ 104 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKDLVELVAR-LAALP----GIEDIALTTNGLL---------LAR-H 104 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCCHHHHHHH-HHhcC----CCCeEEEEeCchh---------HHH-H
Confidence 46788999999999999988776432 211111112233332 33311 1126778885421 111 2
Q ss_pred HHHHHhhCCCcccEEEecCCCCC----CC--ChhHHHHHHHHHHHHHcCCc--c--EEEeecCCHHHHHHHHHHHHHcCC
Q 021767 149 RASLARLQIEQIGIGQLHWSTAN----YA--PPQELALWNGLVAMYEKGLV--R--AVGVSNYGPNQLVKIHDYLTARGV 218 (308)
Q Consensus 149 e~sL~~L~~d~iDl~~lH~~~~~----~~--~~~~~~~~~~l~~l~~~G~i--r--~iGvSn~~~~~l~~~~~~~~~~~~ 218 (308)
-+.|.+.|++++- +-++..++. .. ......++++++.+++.|.- + .+-+.+.+.+++.++.+.+...++
T Consensus 105 ~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv 183 (334)
T TIGR02666 105 AKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGV 183 (334)
T ss_pred HHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 3446666765543 234433221 11 12456799999999999862 2 233346788899999998887776
Q ss_pred CceeeeeccCcc
Q 021767 219 PLCSAQVQFSLL 230 (308)
Q Consensus 219 ~~~~~Q~~~~~~ 230 (308)
.+.. ++|.++
T Consensus 184 ~~~~--ie~mp~ 193 (334)
T TIGR02666 184 TLRF--IELMPL 193 (334)
T ss_pred eEEE--EeccCC
Confidence 4333 345444
No 71
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=67.27 E-value=1.1e+02 Score=28.43 Aligned_cols=156 Identities=11% Similarity=0.110 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCC----chHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNG----KSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVN 146 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g----~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~ 146 (308)
+.++..+.++.+++.|++.|=.--..+. ..+ ..+...=+++++. -..++-|.--.. ..++.+...+
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~--~~~~~~~~~d~~~v~avr~~-----~g~~~~l~vDan---~~~~~~~A~~ 189 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGP--SDGHAGLRKNVELVRAIREA-----VGYDVDLMLDCY---MSWNLNYAIK 189 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCC--CcchHHHHHHHHHHHHHHHH-----hCCCCcEEEECC---CCCCHHHHHH
Confidence 3466667778888999998854321111 001 0111122344442 123444443331 1235544332
Q ss_pred HHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeee
Q 021767 147 ACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQV 225 (308)
Q Consensus 147 ~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 225 (308)
.+++|. .+|+.++..|- +.+ -++.+.+|+++..+. ..|=+.++..++.++++. ..++++|+
T Consensus 190 ----~~~~l~--~~~~~~iEeP~----~~~---d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~ 251 (341)
T cd03327 190 ----MARALE--KYELRWIEEPL----IPD---DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQP 251 (341)
T ss_pred ----HHHHhh--hcCCccccCCC----Ccc---CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEec
Confidence 233332 24566666442 111 257788888887776 556677888888877653 34788888
Q ss_pred ccCcccCCcchhhHHHHHHHhCCcEEEcc
Q 021767 226 QFSLLSMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
..+-.---.+-.++.++|+++|+.++..+
T Consensus 252 d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 252 DVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 76553211122478999999999987653
No 72
>PRK14017 galactonate dehydratase; Provisional
Probab=67.10 E-value=78 Score=29.85 Aligned_cols=158 Identities=12% Similarity=0.100 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCC-CCCCC----chHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGT-GRLNG----KSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFV 145 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~-~~~~g----~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~ 145 (308)
+.++..+.+..+++.|++.|=.--. +. +...+ ..+...=+++++. --.++.|.--... .++.+.
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~-~~~~~~~~~~~~~~d~~~i~avr~~-----~g~~~~l~vDaN~---~w~~~~-- 192 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGT-EELQYIDSPRKVDAAVARVAAVREA-----VGPEIGIGVDFHG---RVHKPM-- 192 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCc-CCccccccHHHHHHHHHHHHHHHHH-----hCCCCeEEEECCC---CCCHHH--
Confidence 3456667778888999998865310 00 00000 0111222334442 1234545444421 235443
Q ss_pred HHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeee
Q 021767 146 NACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQ 224 (308)
Q Consensus 146 ~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q 224 (308)
..+.++.|. .+++.++..|- +.+ -++.+.+|++...+. ..|=|-++...+..+++. ..++++|
T Consensus 193 --A~~~~~~l~--~~~~~~iEeP~----~~~---d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~ 256 (382)
T PRK14017 193 --AKVLAKELE--PYRPMFIEEPV----LPE---NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQ 256 (382)
T ss_pred --HHHHHHhhc--ccCCCeEECCC----CcC---CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEe
Confidence 233333442 24566666542 111 257788888887665 556677888888877663 2478888
Q ss_pred eccCcccCCcchhhHHHHHHHhCCcEEEccc
Q 021767 225 VQFSLLSMGENQLEIKNICDSLGIRLISYSP 255 (308)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 255 (308)
+..+.+---..-..+.+.|+++||.++..+.
T Consensus 257 ~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 257 PDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred cCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 8765432111224789999999999986653
No 73
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=66.48 E-value=1.2e+02 Score=28.83 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHHHHcCCC-ceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEe--------ccCCCCCCCCh
Q 021767 71 MDSQLQQTFNLAVENGIN-LFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIAT--------KFAAYPWRLTP 141 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~-~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~t--------K~~~~~~~~~~ 141 (308)
+-++=.+-+..|.+.|-. ..|.+.. |+ -..+-+++-+. .++=|-| |......+++.
T Consensus 76 ~i~~EveK~~~A~~~GADtvMDLStG-gd-------l~eiR~~ii~~-------s~vPvGTVPIYqA~~~~~~~~~~~t~ 140 (432)
T COG0422 76 DIDEEVEKAVWAIKWGADTVMDLSTG-GD-------LHEIREWIIRN-------SPVPVGTVPIYQALEEVNGKVEDLTE 140 (432)
T ss_pred CHHHHHHHHHHHHHhCcceeEecccC-CC-------HHHHHHHHHhc-------CCCCcCCchHHHHHHHHhcchhhCCH
Confidence 344445677899999955 5576643 55 55556665331 1111111 01101135688
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCce
Q 021767 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLC 221 (308)
Q Consensus 142 ~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 221 (308)
+.+...+++..+ +-+|.+.+|.- + .++.++.+++.|++ .|+.+-....+..+.-. ++
T Consensus 141 d~~~~~v~~qa~----~GVdfmTIHaG------V----~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~---~~---- 197 (432)
T COG0422 141 DDFFDTVEKQAE----QGVDFMTIHAG------V----LLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLH---NH---- 197 (432)
T ss_pred HHHHHHHHHHHH----hCCcEEEeehh------h----hHHHHHHHHhcCce--eeeeccchHHHHHHHHH---cC----
Confidence 888888887776 44788999931 1 46889999999974 67777676655544221 11
Q ss_pred eeeeccCcccCCcchhhHHHHHHHhCCcEE
Q 021767 222 SAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 222 ~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
.=|++...+. ++++.|+++++.+.
T Consensus 198 ----~ENply~~fd--~lleI~k~yDvtlS 221 (432)
T COG0422 198 ----KENPLYEHFD--ELLEIFKEYDVTLS 221 (432)
T ss_pred ----CcCchhhhHH--HHHHHHHHhCeeee
Confidence 2234432222 89999999999984
No 74
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=66.21 E-value=1.4e+02 Score=29.50 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=50.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhC-CCcccEEEecCCCCCCCChhHHHHHHHH
Q 021767 106 EKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQ-IEQIGIGQLHWSTANYAPPQELALWNGL 184 (308)
Q Consensus 106 E~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~-~d~iDl~~lH~~~~~~~~~~~~~~~~~l 184 (308)
|+.+-+.|++..+ ..+.+=++|.|-+. .+-|-..++...+.++ -.-++++.+|.|...-.. ......++
T Consensus 70 ~~kL~~~I~~~~~-~~~P~~I~V~tTC~-------~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~--~~g~~~~l 139 (513)
T CHL00076 70 QEKVVDNITRKDK-EERPDLIVLTPTCT-------SSILQEDLQNFVDRASIESDSDVILADVNHYRVNE--LQAADRTL 139 (513)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEECCCCc-------hhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccH--HHHHHHHH
Confidence 6666666654211 12445566666663 2223333333333232 123689999987433111 11121222
Q ss_pred HHHH------------------HcCCccEEEeecC---CHHHHHHHHHHHHHcCCCc
Q 021767 185 VAMY------------------EKGLVRAVGVSNY---GPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 185 ~~l~------------------~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~~~ 220 (308)
+.+. ..++|.-||.++. +...+.++.+.+...|+.+
T Consensus 140 ~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 140 EQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred HHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 2222 2466888987742 2455666666665555443
No 75
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=65.34 E-value=57 Score=29.19 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCC---CChhHHHHHHHHHHHHHcCCccEEEeecCCH---HHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANY---APPQELALWNGLVAMYEKGLVRAVGVSNYGP---NQLVKIHD 211 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~---~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~---~~l~~~~~ 211 (308)
.++.+... .+-+.|.++|+|+|++-+........ .-....+.++.+.++.+ +..+..+++.... +.+..
T Consensus 16 ~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~--- 90 (266)
T cd07944 16 DFGDEFVK-AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEP--- 90 (266)
T ss_pred cCCHHHHH-HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHH---
Confidence 34555544 45556999999999998765322110 00111234555555543 3466666665442 33332
Q ss_pred HHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 212 YLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 212 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
+...++ +.+.+.+..-+.. .-.+.+++++++|+.+..
T Consensus 91 -a~~~gv--~~iri~~~~~~~~-~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 91 -ASGSVV--DMIRVAFHKHEFD-EALPLIKAIKEKGYEVFF 127 (266)
T ss_pred -HhcCCc--CEEEEecccccHH-HHHHHHHHHHHCCCeEEE
Confidence 222333 3333332221111 113678888888876653
No 76
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=64.11 E-value=1.2e+02 Score=28.10 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHcCCCceeCCcCCCCCC-CCC---chHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHH
Q 021767 72 DSQLQQTFNLAVENGINLFDTADSYGTGR-LNG---KSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNA 147 (308)
Q Consensus 72 ~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~-~~g---~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~ 147 (308)
.++..+.+..+.+.|++.|=.--....+. +.+ ..+...=+++++. -..++.|..-... .++.+.
T Consensus 124 ~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~-----~g~~~~l~vDaN~---~~~~~~---- 191 (352)
T cd03325 124 PSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREA-----VGPDIDIGVDFHG---RVSKPM---- 191 (352)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHh-----hCCCCEEEEECCC---CCCHHH----
Confidence 35566677778889999886532211100 000 1122333455542 2235555444421 224443
Q ss_pred HHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeec
Q 021767 148 CRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQ 226 (308)
Q Consensus 148 ~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~ 226 (308)
..+.++.|. ..++.++..|- +.+ -++.+.+|+++.-+. ..|=|.++..++..+++. -.++++|+.
T Consensus 192 A~~~~~~l~--~~~i~~iEeP~----~~~---d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d 257 (352)
T cd03325 192 AKDLAKELE--PYRLLFIEEPV----LPE---NVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPD 257 (352)
T ss_pred HHHHHHhcc--ccCCcEEECCC----Ccc---CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecC
Confidence 333333442 34566666442 111 267888888876655 456677788888877653 247888887
Q ss_pred cCcccCCcchhhHHHHHHHhCCcEEEcc
Q 021767 227 FSLLSMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
...+---..-..+.++|+++||.++..+
T Consensus 258 ~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 258 ISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred ccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 6543211122478999999999998654
No 77
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=63.32 E-value=38 Score=32.52 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCCceeCCcCCCCCCC--CCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHH
Q 021767 74 QLQQTFNLAVENGINLFDTADSYGTGRL--NGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRAS 151 (308)
Q Consensus 74 ~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~--~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~s 151 (308)
...+.+...+..+..--|.- .|+.... .-.+-..+.+.|.. ..++|++++-. .. +.+-+.+++-..
T Consensus 58 ~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInA------d~~dIiFts~A-TE----s~Nlvl~~v~~~ 125 (428)
T KOG1549|consen 58 RVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINA------DPSDIVFTSGA-TE----SNNLVLKGVARF 125 (428)
T ss_pred HHHHHHHHHHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCC------CCCcEEEeCCc-hH----HHHHHHHHhhcc
Confidence 44555566666555444433 4553100 01122334444433 33444444332 21 334444444444
Q ss_pred HHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC-ccEEEeecCCHHHHHHHHHHHHHcC--CCceeeeeccC
Q 021767 152 LARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYLTARG--VPLCSAQVQFS 228 (308)
Q Consensus 152 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~--~~~~~~Q~~~~ 228 (308)
... +++. .++.+|.- + ..+....+.++++|. ++++.|.+-....++++.+..+... +-++.+..+..
T Consensus 126 ~~~-~~~k-~iitl~~e---H-----~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~g 195 (428)
T KOG1549|consen 126 FGD-KTKK-HIITLQTE---H-----PCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIG 195 (428)
T ss_pred ccc-cccc-eEEEeccc---C-----cchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcc
Confidence 444 4444 56666621 1 124556666677775 6666666544445555544432111 01222222221
Q ss_pred cccCCcchhhHHHHHHHhCCcEEE
Q 021767 229 LLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
.+ ..-+++...|++.||.++.
T Consensus 196 v~---~Pv~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 196 VL---QPVKEIVKICREEGVQVHV 216 (428)
T ss_pred cc---ccHHHHHHHhCcCCcEEEe
Confidence 11 1113677777777776554
No 78
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=62.77 E-value=1.4e+02 Score=28.31 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=56.8
Q ss_pred HhhCCCcccEEEecCCCCCCC--ChhHHHHHHHHHHHHHcCCcc-EEEee---cCCHHHHHHHHHHHHHcCCCceeeeec
Q 021767 153 ARLQIEQIGIGQLHWSTANYA--PPQELALWNGLVAMYEKGLVR-AVGVS---NYGPNQLVKIHDYLTARGVPLCSAQVQ 226 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~~~--~~~~~~~~~~l~~l~~~G~ir-~iGvS---n~~~~~l~~~~~~~~~~~~~~~~~Q~~ 226 (308)
+.++ +|++.||....+.. .-...++.+.+++..+.=.+= -|+=| ..+++.++..++.+. |-++-++-..
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~--G~kpLL~SAt 224 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAE--GERCLLASAN 224 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhC--CCCcEEEecC
Confidence 4554 68888886432211 111223556666654433322 22222 457888888887754 2245544333
Q ss_pred cCcccCCcchhhHHHHHHHhCCcEEEccccccccc
Q 021767 227 FSLLSMGENQLEIKNICDSLGIRLISYSPLGLGML 261 (308)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 261 (308)
... .. ..+.+.|+++|..+++++|..-+.+
T Consensus 225 ~e~----Ny-~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 225 LDL----DY-EKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred chh----hH-HHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 221 12 2789999999999999998876653
No 79
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=62.68 E-value=1.4e+02 Score=28.31 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHH-cCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVE-NGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACR 149 (308)
Q Consensus 71 ~~~~~~~~l~~A~e-~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e 149 (308)
+.++..+.++.+++ .|++.|=.-. |.. + ...+...=+++++. . .++.|..-... .++.+...
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~-~-~~~di~~v~avRea----~--~~~~l~vDaN~---~w~~~~A~---- 230 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG--GVL-P-GEEEIEAVKALAEA----F--PGARLRLDPNG---AWSLETAI---- 230 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec--CCC-C-HHHHHHHHHHHHHh----C--CCCcEEEeCCC---CcCHHHHH----
Confidence 44556666677765 6999885432 210 0 01112222444442 2 23444444421 23544433
Q ss_pred HHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccC
Q 021767 150 ASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFS 228 (308)
Q Consensus 150 ~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~ 228 (308)
+.+++|. - ++.++..|- + -++.+.+|++...+- ..|-|-++..++.++++. ..++++|....
T Consensus 231 ~~~~~l~--~-~l~~iEeP~----~-----d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~ 293 (395)
T cd03323 231 RLAKELE--G-VLAYLEDPC----G-----GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHH 293 (395)
T ss_pred HHHHhcC--c-CCCEEECCC----C-----CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeeccc
Confidence 3334453 2 666777442 2 157788888887665 556666777777776653 24788888765
Q ss_pred cccCCcchhhHHHHHHHhCCcEEEcccc
Q 021767 229 LLSMGENQLEIKNICDSLGIRLISYSPL 256 (308)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~gi~v~a~spl 256 (308)
..---..-.++.++|+++||.+...+..
T Consensus 294 ~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 294 FWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred cccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 4321112247899999999999876654
No 80
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=62.56 E-value=61 Score=27.51 Aligned_cols=150 Identities=9% Similarity=0.063 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+.+++.++++.+++.|++..|.- +..+..+++... ..+.++++++.-=. ...+.+++.+..
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~------------~~~l~p~m~~iG-~~w~~gei~va~~~------~a~~~~~~~l~~ 70 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI------------EKGLMAGMGVVG-KLFEDGELFLPHVM------MSADAMLAGIKV 70 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH------------HHHHHHHHHHHH-HHHcCCCccHHHHH------HHHHHHHHHHHH
Confidence 56789999999999999877643 223333333211 00234444442111 133445555555
Q ss_pred HHHhhCCC----cccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC-ccEEEeecCCHHHHHHHHHHHHHcCCCceeeee
Q 021767 151 SLARLQIE----QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQV 225 (308)
Q Consensus 151 sL~~L~~d----~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 225 (308)
....+..+ .---+++-.+..+... .+..-.-.-|+..|. +.++|. +-+.+.+.+.... ..|+++.+
T Consensus 71 l~~~~~~~~~~~~~~~vv~~t~~gd~H~---lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~-----~~pd~v~l 141 (197)
T TIGR02370 71 LTPEMEKAVETEVLGKVVCGVAEGDVHD---IGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKK-----EKPLMLTG 141 (197)
T ss_pred HHHHhhccccCCCCCeEEEEeCCCchhH---HHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHH-----cCCCEEEE
Confidence 54555421 1112344333222211 223333445667786 777886 4466766665543 56888888
Q ss_pred ccCcccCCcchhhHHHHHHHhCC
Q 021767 226 QFSLLSMGENQLEIKNICDSLGI 248 (308)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~gi 248 (308)
.+.....-..-.++++.+++.|.
T Consensus 142 S~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 142 SALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred ccccccCHHHHHHHHHHHHHcCC
Confidence 77665443334578899999864
No 81
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=62.16 E-value=38 Score=31.71 Aligned_cols=83 Identities=11% Similarity=-0.037 Sum_probs=55.9
Q ss_pred ccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhh
Q 021767 160 IGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLE 238 (308)
Q Consensus 160 iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~ 238 (308)
+++.++..|- +.+ -++.+.+|++...+. ..|=|-++..++..+++. ..++++|+...-+---..-.+
T Consensus 189 ~~l~~iEeP~----~~~---d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGit~~~~ 256 (361)
T cd03322 189 YRLFWMEDPT----PAE---NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGITPARK 256 (361)
T ss_pred cCCCEEECCC----Ccc---cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCHHHHHH
Confidence 4666666442 111 267888888887765 667777888888887664 347888887655321112247
Q ss_pred HHHHHHHhCCcEEEcc
Q 021767 239 IKNICDSLGIRLISYS 254 (308)
Q Consensus 239 l~~~~~~~gi~v~a~s 254 (308)
+.++|+++||.++..+
T Consensus 257 ia~~A~~~gi~~~~h~ 272 (361)
T cd03322 257 IADLASLYGVRTGWHG 272 (361)
T ss_pred HHHHHHHcCCeeeccC
Confidence 8999999999997654
No 82
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=62.13 E-value=1e+02 Score=26.61 Aligned_cols=103 Identities=12% Similarity=0.167 Sum_probs=59.2
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCC
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGV 218 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~ 218 (308)
++.+.. ..+-+.|.++|+++|++- +|. ...++.+.++.+.+.... .+-.+++....+.++...+.+...+.
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~---~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~ 81 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPF---ASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGI 81 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCT---SSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTS
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccc---cCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccC
Confidence 344444 445556999999999987 221 111222344555555555 55566777778888886665655555
Q ss_pred CceeeeeccCcccCC------c-----chhhHHHHHHHhCCcE
Q 021767 219 PLCSAQVQFSLLSMG------E-----NQLEIKNICDSLGIRL 250 (308)
Q Consensus 219 ~~~~~Q~~~~~~~~~------~-----~~~~l~~~~~~~gi~v 250 (308)
+...+-...|..+.. . .-.+.+.+++++|+.+
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 433333444442111 0 1136789999999988
No 83
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=61.41 E-value=55 Score=29.20 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=40.0
Q ss_pred CCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHH
Q 021767 157 IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKI 209 (308)
Q Consensus 157 ~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 209 (308)
....|+++|..|-...++....++++-|.+|+++|+ .|=+.+|+...+.+.
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~ 205 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAY 205 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhh
Confidence 467899999988655566666789999999999987 677888887766544
No 84
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=61.37 E-value=1.5e+02 Score=28.23 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=59.1
Q ss_pred eCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCC-CCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCC
Q 021767 91 DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQ-NNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWST 169 (308)
Q Consensus 91 DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R-~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~ 169 (308)
++.-+||. |+.|-++|++..+ ..++ +=++|.|-+.. ..--++++.-+++.-++.+ -++++.+|.|+
T Consensus 64 E~d~VfGg-------~~~L~~aI~~~~~-~~p~p~~i~V~~tc~~---~liGdDi~~v~~~~~~~~~--~~~vi~v~tpg 130 (415)
T cd01977 64 ESHVVFGG-------EKKLKKNIIEAFK-EFPDIKRMTVYTTCTT---ALIGDDIKAVAKEVMEELP--DVDIFVCNAPG 130 (415)
T ss_pred ccceeecc-------HHHHHHHHHHHHH-hCCCCcEEEEECCCch---hhhcCCHHHHHHHHHHhcC--CCeEEEEeCCC
Confidence 45567886 7888888876432 1222 33777777643 1222333333333333332 26799999886
Q ss_pred CCCCCh--hHHHHHH-HHHHHH--------HcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 170 ANYAPP--QELALWN-GLVAMY--------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 170 ~~~~~~--~~~~~~~-~l~~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
...... ....+.+ .++++. +.+.|.-||-.++ ...++++.+.++..|+++
T Consensus 131 f~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~-~~d~~ei~~lL~~~Gl~v 191 (415)
T cd01977 131 FAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNI-QGDTEVLQKYFERMGIQV 191 (415)
T ss_pred cCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCC-cccHHHHHHHHHHcCCeE
Confidence 432111 1111122 233333 2467888885443 334555555555566554
No 85
>PRK07329 hypothetical protein; Provisional
Probab=60.75 E-value=1.2e+02 Score=26.70 Aligned_cols=106 Identities=11% Similarity=0.059 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhCCCcccEEEecCCCCC-CCC-----hhHH----HHHHHHHHHHHcC-CccEEEeec----------CC-
Q 021767 145 VNACRASLARLQIEQIGIGQLHWSTAN-YAP-----PQEL----ALWNGLVAMYEKG-LVRAVGVSN----------YG- 202 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~iDl~~lH~~~~~-~~~-----~~~~----~~~~~l~~l~~~G-~ir~iGvSn----------~~- 202 (308)
...+++.|.+...||+ +.-+|+.+.. ... .+.. ..++.+.++.+.+ .+.-||==. .+
T Consensus 82 ~~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~ 160 (246)
T PRK07329 82 EDDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEEL 160 (246)
T ss_pred HHHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcCh
Confidence 3445566666777887 7888976321 100 1112 2347888888876 666555111 11
Q ss_pred ---HHHHHHHHHHHHHcCCCceeeeeccC-cccCCcchhhHHHHHHHhCCcEEE
Q 021767 203 ---PNQLVKIHDYLTARGVPLCSAQVQFS-LLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 203 ---~~~l~~~~~~~~~~~~~~~~~Q~~~~-~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
...++++++.+...+..+.+|-..+. ....... ..+++.|++.|+..+.
T Consensus 161 ~~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~-~~~l~~~~~~g~~~i~ 213 (246)
T PRK07329 161 KAFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLY-RYAIELYKQLGGKLFS 213 (246)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcch-HHHHHHHHHcCCeEEE
Confidence 23455666777777777777654331 1111111 3678999999986443
No 86
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=60.66 E-value=84 Score=27.42 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEeec-CCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccc
Q 021767 177 ELALWNGLVAMYEKGLVRAVGVSN-YGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSP 255 (308)
Q Consensus 177 ~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 255 (308)
.+++.++|..|+ +..|..-. ++..|..++...|+..|.. .|.|+-... +.++++..-+.|..++.-+.
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d-~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRD-PEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCC-HHHHHHHHHHcCCeEEEEEE
Confidence 344666666666 44444322 3566777777778777653 244553333 33888888889988887777
Q ss_pred ccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCcc
Q 021767 256 LGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIP 305 (308)
Q Consensus 256 l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~a 305 (308)
-+.|+ ..++... .+ ..+.++.|..+.++||+.|+
T Consensus 144 sa~gL-~~~~lGr---------~i------~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAEGL-DESWLGR---------RI------DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred eccCC-ChHHhCC---------cc------CHHHHHHHHHHHHhcCCCcc
Confidence 77774 2222111 11 12445789999999999875
No 87
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=60.19 E-value=1.7e+02 Score=28.44 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=57.8
Q ss_pred eeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCC-CCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCC
Q 021767 90 FDTADSYGTGRLNGKSEKLLGKFISEIPGQKQV-QNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWS 168 (308)
Q Consensus 90 ~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~-R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~ 168 (308)
-+..-+||. |+.|-++|++..+ ..+ .+-++|.|-+-. ..--+++..-+++.-++. .-++++.+|.|
T Consensus 102 ~E~d~VfGg-------~~kL~~aI~~~~~-~~~~p~~I~V~tTC~~---elIGDDi~~v~~~~~~~~--~~~~vi~v~tp 168 (461)
T TIGR01860 102 KESHVVFGG-------EKQLEKSIHEAFD-EFPDIKRMIVYTTCPT---ALIGDDIKAVAKKVQKEL--PDVDIFTVECP 168 (461)
T ss_pred CCCceeeCc-------HHHHHHHHHHHHH-hCCCCCEEEEEccCch---hhhcCCHHHHHHHHHHhc--CCCcEEEEeCC
Confidence 344557886 8888888876432 112 234777776532 112223333333322232 13589999988
Q ss_pred CCCCCCh--hHHHHHHHH-HHH--------HHcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 169 TANYAPP--QELALWNGL-VAM--------YEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 169 ~~~~~~~--~~~~~~~~l-~~l--------~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
+...... ....+.+++ +++ +..+.|.-||-.++ ...+.++.+.++..|+++
T Consensus 169 gf~g~s~~~G~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gi~v 230 (461)
T TIGR01860 169 GFAGVSQSKGHHVLNIGWINEKVGTLEPEITSEYTINVIGDYNI-QGDTQVLQKYWDKMGIQV 230 (461)
T ss_pred CcCCcccchHHHHHHHHHHHHHhcccCCCCCCCCcEEEECCCCC-cccHHHHHHHHHHcCCcE
Confidence 6442111 111112221 211 22567888884443 333455555555566654
No 88
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=60.09 E-value=20 Score=34.19 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhC--CcEEEccccc
Q 021767 180 LWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLG--IRLISYSPLG 257 (308)
Q Consensus 180 ~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~g--i~v~a~spl~ 257 (308)
+++++.+..++++ ++.+.+.+.+-+.++.=...|+.|.++-.-.| . +.++.+++.+ ++++++ |
T Consensus 123 iYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~-------~-~~~~~~~~~~R~~giVSR---G 187 (431)
T PRK13352 123 IYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT-------R-ETLERLKKSGRIMGIVSR---G 187 (431)
T ss_pred HHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------H-HHHHHHHhcCCccCeecC---C
Confidence 5677777755554 67778888766655533335555555433222 2 7777787643 444432 2
Q ss_pred ccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCcc
Q 021767 258 LGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIP 305 (308)
Q Consensus 258 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~a 305 (308)
+.++. .|--.+-.++|. -+-.+.|-+||++|++|.+
T Consensus 188 Gs~~~-~WM~~n~~ENPl-----------ye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 188 GSFLA-AWMLHNNKENPL-----------YEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHH-HHHHHcCCcCch-----------HHHHHHHHHHHHHhCeeee
Confidence 22222 111000011221 2224688899999988753
No 89
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=59.46 E-value=47 Score=31.14 Aligned_cols=72 Identities=17% Similarity=0.076 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccccc
Q 021767 181 WNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLG 257 (308)
Q Consensus 181 ~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 257 (308)
++.+.+|++...+. ..|=|-++..++.++++. ..++++|+...-+---..-..+...|+.+|+.++..+.+.
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~ 299 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLE 299 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchh
Confidence 56777788876665 567777888887777653 3477888766553211122378999999999998754443
No 90
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=58.60 E-value=96 Score=27.15 Aligned_cols=110 Identities=24% Similarity=0.298 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCccEEEeec---CCHH--HHHHHHHHHHHcCCCceeeeeccC-cccCCcch--------hhHHHHHHHhC
Q 021767 182 NGLVAMYEKGLVRAVGVSN---YGPN--QLVKIHDYLTARGVPLCSAQVQFS-LLSMGENQ--------LEIKNICDSLG 247 (308)
Q Consensus 182 ~~l~~l~~~G~ir~iGvSn---~~~~--~l~~~~~~~~~~~~~~~~~Q~~~~-~~~~~~~~--------~~l~~~~~~~g 247 (308)
+.++..++.| ...|.+.. +..+ .+.++.+.+...|..+...+...+ .++..... ...++.|++.|
T Consensus 19 ~~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg 97 (274)
T COG1082 19 EILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELG 97 (274)
T ss_pred HHHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcC
Confidence 4556666667 66666663 1111 145555556666666665555555 34332210 23789999999
Q ss_pred CcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 248 IRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 248 i~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
+.++...+-... +..... .+ +...+...+.+..+.++|+++++..
T Consensus 98 ~~~vv~~~g~~~---~~~~~~-~~--------~~~~~~~~~~l~~l~~~a~~~~i~l 142 (274)
T COG1082 98 AKVVVVHPGLGA---GADDPD-SP--------EEARERWAEALEELAEIAEELGIGL 142 (274)
T ss_pred CCeEEeecccCC---cCCCCC-CC--------cccHHHHHHHHHHHHHHHHHhCCce
Confidence 887664443221 111000 00 0011345677789999999987654
No 91
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=58.31 E-value=1.2e+02 Score=26.89 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCC---CCCChhHHHHHHHHHHHHHc-CCccEEEeecC---CHHHHHHHHH
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTA---NYAPPQELALWNGLVAMYEK-GLVRAVGVSNY---GPNQLVKIHD 211 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~---~~~~~~~~~~~~~l~~l~~~-G~ir~iGvSn~---~~~~l~~~~~ 211 (308)
++.+...+ +-+.|.++|++++++-+...... ...+... .-|+.++.+++. +..+...++.+ ..+.++.+.
T Consensus 19 ~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~-~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~- 95 (263)
T cd07943 19 FTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFAAH-TDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA- 95 (263)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCCCC-ChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH-
Confidence 35555444 44558889999999976532110 0011111 135566666443 34666665532 344444333
Q ss_pred HHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 212 YLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 212 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
..+ ++.+.+.++.-+. ..-.+.+++++++|+.+..
T Consensus 96 ---~~g--~~~iri~~~~s~~-~~~~~~i~~ak~~G~~v~~ 130 (263)
T cd07943 96 ---DLG--VDVVRVATHCTEA-DVSEQHIGAARKLGMDVVG 130 (263)
T ss_pred ---HcC--CCEEEEEechhhH-HHHHHHHHHHHHCCCeEEE
Confidence 233 3444433322111 1223678888888876644
No 92
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=58.02 E-value=1.9e+02 Score=28.15 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=57.1
Q ss_pred CCcCCCCCCCCCchHHHHHHHHhhCCCCCCC-CCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCC
Q 021767 92 TADSYGTGRLNGKSEKLLGKFISEIPGQKQV-QNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTA 170 (308)
Q Consensus 92 tA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~-R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~ 170 (308)
..-+||. |+.|-++|++..+ ..+ .+-++|.|-+-. ..--+++..-+++.-++.+ .+.++.+|.|+.
T Consensus 102 ~diVfGg-------e~kL~~aI~e~~~-~~p~p~~I~V~stC~~---~lIGDDi~~v~~e~~~~~~--~~pvv~v~t~gf 168 (457)
T TIGR01284 102 SHVVFGG-------EKKLKRCILEAFR-EFPEIKRMYTYATCTT---ALIGDDIDAIAREVMEEIP--DVDVFAINAPGF 168 (457)
T ss_pred CceEecH-------HHHHHHHHHHHHH-hCCCCceEEEECCChH---HhhccCHHHHHHHHHHhcC--CCeEEEeeCCCc
Confidence 3346775 8888888876431 112 233777777632 1112233333333222321 267999998864
Q ss_pred CCCC-h-hHHHHHHH-HHHHH--------HcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 171 NYAP-P-QELALWNG-LVAMY--------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 171 ~~~~-~-~~~~~~~~-l~~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
.... . ....+.++ ++++. +.+.|.-||-.|. +..+.++.+.++..|+.+
T Consensus 169 ~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gl~v 228 (457)
T TIGR01284 169 AGPSQSKGHHVANITWINDKVGTAEPEITTEYDVNLIGEYNI-QGDLWVLKKYFERMGIQV 228 (457)
T ss_pred CCcccchHHHHHHHHHHHHHhCccCcccCCCCeEEEEccCCc-hhhHHHHHHHHHHcCCeE
Confidence 4211 1 11112222 23333 2467888886554 344555555566666544
No 93
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=57.98 E-value=81 Score=29.72 Aligned_cols=105 Identities=20% Similarity=0.202 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCCh--hHHHHHHH
Q 021767 106 EKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPP--QELALWNG 183 (308)
Q Consensus 106 E~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~--~~~~~~~~ 183 (308)
|+.+-+++++..+ ...++=++|.|-+-+. .--+++..-+++.-++.+. .++.+|.+... ... ....++++
T Consensus 59 ~~kL~~~i~~~~~-~~~P~~i~v~~sC~~~---iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~-~~~~~G~~~a~~~ 130 (398)
T PF00148_consen 59 EEKLREAIKEIAE-KYKPKAIFVVTSCVPE---IIGDDIEAVARELQEEYGI---PVIPVHTPGFS-GSYSQGYDAALRA 130 (398)
T ss_dssp HHHHHHHHHHHHH-HHSTSEEEEEE-HHHH---HTTTTHHHHHHHHHHHHSS---EEEEEE--TTS-SSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHh-cCCCcEEEEECCCCHH---HhCCCHHHHHHHhhcccCC---cEEEEECCCcc-CCccchHHHHHHH
Confidence 7777777654321 0234667787776321 1112233333333344553 88889977542 221 22335555
Q ss_pred HHHHH-H------cCCccEEEeecCCHHHHHHHHHHHHHcCC
Q 021767 184 LVAMY-E------KGLVRAVGVSNYGPNQLVKIHDYLTARGV 218 (308)
Q Consensus 184 l~~l~-~------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~ 218 (308)
|-+.. + .+.|.-||.++.....+.++.+.++..|+
T Consensus 131 l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi 172 (398)
T PF00148_consen 131 LAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGI 172 (398)
T ss_dssp HHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTE
T ss_pred HHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCC
Confidence 54443 2 36788889998886667777776666664
No 94
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=57.52 E-value=30 Score=31.16 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=61.9
Q ss_pred HHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeec---CCHHHHHHHHHHHHHcCCCceeeeecc
Q 021767 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN---YGPNQLVKIHDYLTARGVPLCSAQVQF 227 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn---~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 227 (308)
++++..-+..|+..+..|..---| .+..++...+ .|=|+- ++..++.++++.++..+++..++-+.|
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~gCp--------Vi~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~ 224 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTGCP--------VIASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRY 224 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCCCh--------HHHhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecC
Confidence 333444344788888876322222 2233444443 344443 455677888888888889988888888
Q ss_pred CcccCCcchhhHHHHHHHhCCcEEEccccccc
Q 021767 228 SLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 259 (308)
|+.+ . ++.++|++.||.+++--|+..-
T Consensus 225 ~~g~----s-~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 225 NLGD----S-EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred CCCc----h-HHHHHHHHcCCCeeEECCcchh
Confidence 6642 2 7899999999999998888653
No 95
>PLN02363 phosphoribosylanthranilate isomerase
Probab=56.93 E-value=41 Score=30.05 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEee-cCCHHHHHHHHHHHHHcCC
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS-NYGPNQLVKIHDYLTARGV 218 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~ 218 (308)
+.+.++.+. ++|.|++=+++... ...+ ++.+ ..+.+.+......++.|||. |-+++.+.++.+. .
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~-SpR~--Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-----~ 121 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPK-SKRS--ISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADS-----S 121 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCC-CCCc--CCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-----c
Confidence 556666555 48999999875432 1122 2222 23444443333247789985 7778877776554 5
Q ss_pred CceeeeeccC
Q 021767 219 PLCSAQVQFS 228 (308)
Q Consensus 219 ~~~~~Q~~~~ 228 (308)
.++++|++-+
T Consensus 122 ~ld~VQLHG~ 131 (256)
T PLN02363 122 DLELVQLHGN 131 (256)
T ss_pred CCCEEEECCC
Confidence 6899999753
No 96
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=56.80 E-value=57 Score=31.35 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHc---CCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccc
Q 021767 182 NGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR---GVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSP 255 (308)
Q Consensus 182 ~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~---~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 255 (308)
+-...+=+.|-+..+|..+.+++++++.++.++.. +-|+-+|-+ .++-+... ..++++.|.++||.++..+.
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~-e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPEL-EEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchh-HHHHHHHHHHcCCCEEEecc
Confidence 44556778899999999999999999998888763 345655543 33322222 24789999999999876553
No 97
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=55.77 E-value=1.5e+02 Score=26.48 Aligned_cols=10 Identities=20% Similarity=0.026 Sum_probs=6.6
Q ss_pred cccEEEecCC
Q 021767 159 QIGIGQLHWS 168 (308)
Q Consensus 159 ~iDl~~lH~~ 168 (308)
-+|++=|--|
T Consensus 42 Gad~iElGiP 51 (263)
T CHL00200 42 GADIIELGIP 51 (263)
T ss_pred CCCEEEECCC
Confidence 4677777766
No 98
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=55.18 E-value=5.7 Score=37.20 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=34.2
Q ss_pred cCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCc
Q 021767 190 KGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (308)
Q Consensus 190 ~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~ 249 (308)
-|+||++||-=|+++++.++...-+ .-++.+....++- ++.+..+++.+++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~----e~dly~~Q~~ifL-DP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN----EKDLYERQLDVFL-DPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc----HHHHHHHHHhhhc-CCCCHHHHHHHHHcCCc
Confidence 4999999999999999887754311 1222222222222 12233778888888875
No 99
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=54.39 E-value=1.2e+02 Score=26.63 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=29.0
Q ss_pred hHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 238 EIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
+.+++|++.|...+... .|.....+ .... ..+...+.+..+.++|+++|+..
T Consensus 89 ~~i~~a~~lga~~i~~~---~g~~~~~~--------~~~~----~~~~~~~~l~~l~~~a~~~Gv~l 140 (258)
T PRK09997 89 AAIRYARALGNKKINCL---VGKTPAGF--------SSEQ----IHATLVENLRYAANMLMKEDILL 140 (258)
T ss_pred HHHHHHHHhCCCEEEEC---CCCCCCCC--------CHHH----HHHHHHHHHHHHHHHHHHcCCEE
Confidence 67889999999876421 11111110 0011 12334455677788888888753
No 100
>PLN02591 tryptophan synthase
Probab=53.77 E-value=1.6e+02 Score=26.14 Aligned_cols=11 Identities=9% Similarity=-0.118 Sum_probs=7.7
Q ss_pred CcccEEEecCC
Q 021767 158 EQIGIGQLHWS 168 (308)
Q Consensus 158 d~iDl~~lH~~ 168 (308)
..+|++-|--|
T Consensus 28 ~Gad~iElGiP 38 (250)
T PLN02591 28 CGADVIELGVP 38 (250)
T ss_pred CCCCEEEECCC
Confidence 45777777766
No 101
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=53.60 E-value=1.7e+02 Score=26.31 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHcCCC-ceeeeeccCcccCCcchhhHHHHHHHhCCc
Q 021767 202 GPNQLVKIHDYLTARGVP-LCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~-~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~ 249 (308)
+.++.-++++..+..+.. |.+.+.-||++.+.-.+ ..++.|++.|+.
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie-~F~~~~~~~Gvd 124 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIE-KFLRRAKEAGVD 124 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHH-HHHHHHHHcCCC
Confidence 444444444444434332 55666666665443332 455566666554
No 102
>PLN00191 enolase
Probab=53.39 E-value=2.3e+02 Score=27.70 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=53.6
Q ss_pred ccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEE-e-ecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchh
Q 021767 160 IGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVG-V-SNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQL 237 (308)
Q Consensus 160 iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG-v-Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~ 237 (308)
.++.+|-.| +... -|+.+.+|.+..++.-+| = ...+++.+.++++. ...+++++..|-+-.-.+-.
T Consensus 311 y~I~~IEDP------l~~~-D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~-----~aad~i~iKl~qiGGITea~ 378 (457)
T PLN00191 311 YPIVSIEDP------FDQD-DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE-----KACNALLLKVNQIGTVTESI 378 (457)
T ss_pred CCcEEEECC------CCcc-cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----CCCCEEEecccccCCHHHHH
Confidence 467778744 2111 277888888888887666 1 12468888877664 34677777666442212234
Q ss_pred hHHHHHHHhCCcEEEc
Q 021767 238 EIKNICDSLGIRLISY 253 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~ 253 (308)
++.++|+++|+.++.-
T Consensus 379 ~~a~lA~~~G~~~~is 394 (457)
T PLN00191 379 EAVKMSKAAGWGVMTS 394 (457)
T ss_pred HHHHHHHHCCCEEEeC
Confidence 7899999999999763
No 103
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=53.24 E-value=1.2e+02 Score=27.11 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=52.9
Q ss_pred CcHH-HHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHH---HHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHH
Q 021767 70 SMDS-QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLL---GKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFV 145 (308)
Q Consensus 70 ~~~~-~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~l---G~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~ 145 (308)
++++ +..++.+.++++|..|+=|+.-|+.+ |.+.+-+ -+.++++. ..++ +--|...- =.+.+...
T Consensus 143 L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~---gAt~edv~lm~~~i~~~~----~~~~--vgIKAsGG--Irt~~~A~ 211 (257)
T PRK05283 143 LKDEALIRKASEIAIKAGADFIKTSTGKVPV---NATLEAARIMLEVIRDMG----VAKT--VGFKPAGG--VRTAEDAA 211 (257)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCC---CCCHHHHHHHHHHHHhcc----cCCC--eeEEccCC--CCCHHHHH
Confidence 3445 48889999999999999999999751 4444333 33333210 1122 33343211 12788888
Q ss_pred HHHHHHHHhhCCCccc
Q 021767 146 NACRASLARLQIEQIG 161 (308)
Q Consensus 146 ~~~e~sL~~L~~d~iD 161 (308)
+-++.--+.||.+|++
T Consensus 212 ~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 212 QYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHhChhhcC
Confidence 9999999999998876
No 104
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=53.17 E-value=1.5e+02 Score=25.60 Aligned_cols=160 Identities=9% Similarity=0.062 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHH
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACR 149 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e 149 (308)
.+.++..++++.|.+.|+.-+-..+.|-. ...+.|+. .++-|+|=++-+....+.+.-...++
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~v~---------~a~~~l~~--------~~v~v~tVigFP~G~~~~~~K~~E~~ 77 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSYVP---------LAKELLKG--------TEVRICTVVGFPLGASTTDVKLYETK 77 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHHHH---------HHHHHcCC--------CCCeEEEEeCCCCCCCcHHHHHHHHH
Confidence 46788999999999998877766555432 33444432 36777877764322234444445555
Q ss_pred HHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc--CC-ccEE-EeecCCHHHHHHHHHHHHHcCCCceeeee
Q 021767 150 ASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GL-VRAV-GVSNYGPNQLVKIHDYLTARGVPLCSAQV 225 (308)
Q Consensus 150 ~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~--G~-ir~i-GvSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 225 (308)
+.++ +|.|-||+++-... ...-+...+.+.+.+.++. |+ ++-| -.+-.+.+++.++.+.+...| .++++.
T Consensus 78 ~Av~-~GAdEiDvv~n~g~---l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaG--ADfvKT 151 (211)
T TIGR00126 78 EAIK-YGADEVDMVINIGA---LKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAG--ADFVKT 151 (211)
T ss_pred HHHH-cCCCEEEeecchHh---hhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC--CCEEEe
Confidence 5554 79999998765421 0111234467777777764 54 3332 122235567777777776665 456666
Q ss_pred c--cCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 226 Q--FSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 226 ~--~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
. |.+-.-..++-.++...-...+++-+
T Consensus 152 sTGf~~~gat~~dv~~m~~~v~~~v~IKa 180 (211)
T TIGR00126 152 STGFGAGGATVEDVRLMRNTVGDTIGVKA 180 (211)
T ss_pred CCCCCCCCCCHHHHHHHHHHhccCCeEEE
Confidence 6 66433233322233222223455554
No 105
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=52.54 E-value=80 Score=27.86 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=36.9
Q ss_pred EEeecCCHH--HHHHHHHHHHHcCCCceeeeeccCc---ccCC---cchhhHHHHHHHhCCcEEEcccccc
Q 021767 196 VGVSNYGPN--QLVKIHDYLTARGVPLCSAQVQFSL---LSMG---ENQLEIKNICDSLGIRLISYSPLGL 258 (308)
Q Consensus 196 iGvSn~~~~--~l~~~~~~~~~~~~~~~~~Q~~~~~---~~~~---~~~~~l~~~~~~~gi~v~a~spl~~ 258 (308)
||+|++... .+.+.++.+++.|+ +.+++.... +... ....++.+.++++||.+.++.|...
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~--~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGY--DGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCC--CEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc
Confidence 677776544 36677777776664 444442110 1111 1124688899999999998877554
No 106
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=52.25 E-value=1.7e+02 Score=25.86 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=48.2
Q ss_pred HHhhCCCcccEEEecCCCCCCC--ChhHHHHHHHHHHHHHcCC-ccEEEeecC--------CH-------HHHHHHHHHH
Q 021767 152 LARLQIEQIGIGQLHWSTANYA--PPQELALWNGLVAMYEKGL-VRAVGVSNY--------GP-------NQLVKIHDYL 213 (308)
Q Consensus 152 L~~L~~d~iDl~~lH~~~~~~~--~~~~~~~~~~l~~l~~~G~-ir~iGvSn~--------~~-------~~l~~~~~~~ 213 (308)
.+++|.++|++..-. +..... ..+...+-+..+.+.+.|. |-.++++++ +. +.++++++.+
T Consensus 25 ~~~~G~~~iEl~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a 103 (284)
T PRK13210 25 AKELGFDFVEMSVDE-SDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLA 103 (284)
T ss_pred HHHcCCCeEEEecCC-cccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 357999999986432 111111 1122233344455777774 344444432 11 3356666667
Q ss_pred HHcCCCceeeeeccCcc-cCCc---------chhhHHHHHHHhCCcEE
Q 021767 214 TARGVPLCSAQVQFSLL-SMGE---------NQLEIKNICDSLGIRLI 251 (308)
Q Consensus 214 ~~~~~~~~~~Q~~~~~~-~~~~---------~~~~l~~~~~~~gi~v~ 251 (308)
...|.+..++- .+... .... .-.++.++++++||.+.
T Consensus 104 ~~lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 150 (284)
T PRK13210 104 QDLGIRTIQLA-GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA 150 (284)
T ss_pred HHhCCCEEEEC-CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 77666543321 11111 0100 01357888899998654
No 107
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=52.09 E-value=2.4e+02 Score=27.62 Aligned_cols=164 Identities=13% Similarity=0.148 Sum_probs=85.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHH
Q 021767 65 WGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQF 144 (308)
Q Consensus 65 ~~~~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i 144 (308)
.|+...+++-....++.|.++||..|=..+.-.. .+.+-.+++...+.| ..-.+.|+-...+ ..+.+.+
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd-------~~n~~~ai~~ak~~G-~~~~~~i~yt~sp---~~t~~y~ 165 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDALND-------PRNIQQALRAVKKTG-KEAQLCIAYTTSP---VHTLNYY 165 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEcccCCC-------HHHHHHHHHHHHHcC-CEEEEEEEEEeCC---cCcHHHH
Confidence 4555666777888899999999987766655444 333333333211001 1111333333321 2356666
Q ss_pred HHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHH-HHHcCCCceee
Q 021767 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDY-LTARGVPLCSA 223 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~~~~~~ 223 (308)
.+.+++ +..+|. |.+.|-..-.-..| .++.+.+..+++...+ -||+=.|+-..+..+... +-+.| .+.+
T Consensus 166 ~~~a~~-l~~~Ga---d~I~IkDtaG~l~P---~~v~~Lv~alk~~~~~-pi~~H~Hnt~GlA~An~laAieAG--ad~v 235 (468)
T PRK12581 166 LSLVKE-LVEMGA---DSICIKDMAGILTP---KAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLAAVEAG--ADRI 235 (468)
T ss_pred HHHHHH-HHHcCC---CEEEECCCCCCcCH---HHHHHHHHHHHhccCC-eEEEEeCCCCccHHHHHHHHHHcC--CCEE
Confidence 666665 456775 55666532222233 4455666666665544 478877764443333222 22344 4455
Q ss_pred eeccCcccCCcc---hhhHHHHHHHhCCc
Q 021767 224 QVQFSLLSMGEN---QLEIKNICDSLGIR 249 (308)
Q Consensus 224 Q~~~~~~~~~~~---~~~l~~~~~~~gi~ 249 (308)
..-.+++-.+.. -+.++..++..|+.
T Consensus 236 D~ai~g~g~gagN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 236 DTALSPFSEGTSQPATESMYLALKEAGYD 264 (468)
T ss_pred EeeccccCCCcCChhHHHHHHHHHhcCCC
Confidence 555555544322 23566667666544
No 108
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=51.98 E-value=1.7e+02 Score=25.95 Aligned_cols=106 Identities=12% Similarity=0.042 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
.++.+.-.+-.+-..+-+++++|-|=.+..+ .+-.-+..+++++.++|.++|.+- +=+|+-++...+++.+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~--~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~----- 143 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDD--KTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA----- 143 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCc--cccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-----
Confidence 4577887788888888889999888777743 322224556899999999999865 44666677766666553
Q ss_pred CCceeeeeccCcccC--CcchhhHHHHHHH-hCCcEEE
Q 021767 218 VPLCSAQVQFSLLSM--GENQLEIKNICDS-LGIRLIS 252 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~~--~~~~~~l~~~~~~-~gi~v~a 252 (308)
.+++++.--.++.. .....++++..++ .++.|++
T Consensus 144 -G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 144 -GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred -CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 34555332222221 1212356666666 4778776
No 109
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=51.95 E-value=2e+02 Score=26.66 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=83.8
Q ss_pred CCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCC--CCCCCCCEEEEeccCCCCCCCChHHHHH
Q 021767 69 ESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPG--QKQVQNNIVIATKFAAYPWRLTPGQFVN 146 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~--~~~~R~~v~i~tK~~~~~~~~~~~~i~~ 146 (308)
..+.++...+++.+.+.|++=+=- -|. |..+-+-|.+..+ +...-.++-++|.. ....
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRl---TGG-------EPllR~dl~eIi~~l~~~~~~~islTTNG----------~~L~ 101 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRL---TGG-------EPLLRKDLDEIIARLARLGIRDLSLTTNG----------VLLA 101 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEE---eCC-------CchhhcCHHHHHHHHhhcccceEEEecch----------hhHH
Confidence 467899999999999999987743 343 4444333322110 00123567777765 2344
Q ss_pred HHHHHHHhhCCCcccEEEecCCCCC-CC----ChhHHHHHHHHHHHHHcCC----ccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 147 ACRASLARLQIEQIGIGQLHWSTAN-YA----PPQELALWNGLVAMYEKGL----VRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 147 ~~e~sL~~L~~d~iDl~~lH~~~~~-~~----~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
....-|+.-|++.|- +-||..+++ +. .-....+++.+++..++|. |..+=+-+.+.+++..+++++...+
T Consensus 102 ~~a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~ 180 (322)
T COG2896 102 RRAADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERG 180 (322)
T ss_pred HHHHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcC
Confidence 566667777877765 344443321 00 0123568999999999987 4566667788999999999888766
Q ss_pred CCcee
Q 021767 218 VPLCS 222 (308)
Q Consensus 218 ~~~~~ 222 (308)
..+.+
T Consensus 181 ~~lrf 185 (322)
T COG2896 181 AQLRF 185 (322)
T ss_pred CceEE
Confidence 54333
No 110
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=51.72 E-value=2e+02 Score=26.50 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCccEEEeecC----CHHH-HHHHHHHHHHcCCCceeeeeccCcccC-CcchhhHHHHHHHhCCcEE
Q 021767 178 LALWNGLVAMYEKGLVRAVGVSNY----GPNQ-LVKIHDYLTARGVPLCSAQVQFSLLSM-GENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 178 ~~~~~~l~~l~~~G~ir~iGvSn~----~~~~-l~~~~~~~~~~~~~~~~~Q~~~~~~~~-~~~~~~l~~~~~~~gi~v~ 251 (308)
..+.+-++.+++-+.++.|.+.+- ++.. -.++++.++..+.. ..+.++.|-... ...-.+-++.+++.||.+.
T Consensus 153 ~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~ 231 (321)
T TIGR03822 153 RRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAEARAACARLIDAGIPMV 231 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEE
Confidence 346677777887777765555431 1221 12333333334432 233333331110 1111345777788888888
Q ss_pred Ecccccccc
Q 021767 252 SYSPLGLGM 260 (308)
Q Consensus 252 a~spl~~G~ 260 (308)
..++|-.|.
T Consensus 232 ~q~vLl~gv 240 (321)
T TIGR03822 232 SQSVLLRGV 240 (321)
T ss_pred EEeeEeCCC
Confidence 877777663
No 111
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=51.67 E-value=2e+02 Score=26.53 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=62.3
Q ss_pred CCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeec
Q 021767 121 QVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN 200 (308)
Q Consensus 121 ~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 200 (308)
..++.+.++.|....+ -...+.+.+++..+++| +++.+ ..+. +.+ .....+.++.+..+| +..|-++.
T Consensus 21 ~~~~~i~~v~k~~~~p---f~~~~~~Gi~~aa~~~G---~~v~~-~~~~-~~d---~~~q~~~i~~li~~~-vdgIiv~~ 88 (336)
T PRK15408 21 QAAERIAFIPKLVGVG---FFTSGGNGAKEAGKELG---VDVTY-DGPT-EPS---VSGQVQLINNFVNQG-YNAIIVSA 88 (336)
T ss_pred cCCcEEEEEECCCCCH---HHHHHHHHHHHHHHHhC---CEEEE-ECCC-CCC---HHHHHHHHHHHHHcC-CCEEEEec
Confidence 3577898999975433 35678888999999998 45544 2232 111 223457888888876 88899988
Q ss_pred CCHHHHHHHHHHHHHcCCCceee
Q 021767 201 YGPNQLVKIHDYLTARGVPLCSA 223 (308)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~ 223 (308)
.+.+.+...++.+...++|+.++
T Consensus 89 ~d~~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 89 VSPDGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEe
Confidence 88777777777777777765444
No 112
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=51.37 E-value=1.8e+02 Score=25.96 Aligned_cols=100 Identities=8% Similarity=-0.008 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCCh-hHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCC
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPP-QELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGV 218 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~ 218 (308)
+.+.+.+..++.. .-|.|+||+-.=- .+. +.+.+...++.+++.-.+ -|-|-+++++.++.+++.+. |
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~~------~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~--G- 91 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAGT------AVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAK--G- 91 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCC------CchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCC--C-
Confidence 4555555555543 5689999985321 111 223455666666654333 37888999999998887633 3
Q ss_pred CceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcc
Q 021767 219 PLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 219 ~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
.+.+|-+.... ....++++.++++|+.++...
T Consensus 92 ~~iINsIs~~~----~~~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 92 PPLINSVSAEG----EKLEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred CCEEEeCCCCC----ccCHHHHHHHHHhCCCEEEEe
Confidence 34455443211 112378999999999998743
No 113
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=50.75 E-value=2e+02 Score=26.23 Aligned_cols=188 Identities=11% Similarity=0.109 Sum_probs=92.7
Q ss_pred ceeccCccCCCCcCCCCCCcHHHHHHHHHHHHH-cCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEe
Q 021767 52 MGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVE-NGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIAT 130 (308)
Q Consensus 52 lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e-~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~t 130 (308)
|.||.|.-+. +.....+.++..+.+...++ .|.+.+|---.|+...+ ..+-..+-++|+.+.+ .+.++.|+-
T Consensus 72 iS~GG~~g~~---~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d-~~~~~~~~~al~~Lq~---~~p~l~vs~ 144 (294)
T cd06543 72 VSFGGASGTP---LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTD-TAAIDRRAQALALLQK---EYPDLKISF 144 (294)
T ss_pred EEecCCCCCc---cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCcccc-chhHHHHHHHHHHHHH---HCCCcEEEE
Confidence 5778776321 11123345555555555554 59999997666654111 1123455666665421 223566665
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhhC--CCcccEEEecCCCCC-CCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHH
Q 021767 131 KFAAYPWRLTPGQFVNACRASLARLQ--IEQIGIGQLHWSTAN-YAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLV 207 (308)
Q Consensus 131 K~~~~~~~~~~~~i~~~~e~sL~~L~--~d~iDl~~lH~~~~~-~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~ 207 (308)
-+...+..++.+.+ .+-+..+..| +|+|.++-+..-... ...+ -..+..+.+.++.+=+--+=+ ++..++-
T Consensus 145 Tlp~~p~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~m-g~~a~~aa~~~~~ql~~~~~~---~s~~~~~ 218 (294)
T cd06543 145 TLPVLPTGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDM-GAAAISAAESLHDQLKDLYPK---LSDAELW 218 (294)
T ss_pred ecCCCCCCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccH-HHHHHHHHHHHHHHHHHHccC---CCHHHHH
Confidence 55433334444332 2333334444 456666655432211 0122 223455665555543322222 2333222
Q ss_pred HHHHHHHHcCCCceeeeeccC--cccCCcchhhHHHHHHHhCCcEEEccccccc
Q 021767 208 KIHDYLTARGVPLCSAQVQFS--LLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 208 ~~~~~~~~~~~~~~~~Q~~~~--~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 259 (308)
.. -|+.|.+-+.... .+..... ..+.++++++||+.++|-.+...
T Consensus 219 ~~------ig~TpMiG~nD~~~e~ft~~da-~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 219 AM------IGVTPMIGVNDVGSEVFTLADA-QTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HH------ccccccccccCCCCceeeHHHH-HHHHHHHHhCCCCeEeeeeccCC
Confidence 11 1234554443322 1222222 38999999999999998888764
No 114
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=50.73 E-value=2.3e+02 Score=27.97 Aligned_cols=129 Identities=13% Similarity=0.092 Sum_probs=69.3
Q ss_pred HHHHHHcCCCce--eCCcCCCC-C---CCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHH------
Q 021767 79 FNLAVENGINLF--DTADSYGT-G---RLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVN------ 146 (308)
Q Consensus 79 l~~A~e~Gi~~~--DtA~~Yg~-~---~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~------ 146 (308)
.+...+.|++.+ -||..|-. | .-.|..|.++.-+-+.+. +-.+.++||++-+|.-. -.+-+.
T Consensus 108 f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g--~~L~Gk~~lTaGLGGMg----GAQplA~~m~g~ 181 (546)
T PF01175_consen 108 FERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFG--GDLAGKLFLTAGLGGMG----GAQPLAATMAGG 181 (546)
T ss_dssp HHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHST--TS-TT-EEEEE--STTC----CHHHHHHHHTT-
T ss_pred HHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcC--CCCcceEEEEecccccc----cchHHHHHhcCc
Confidence 455667888866 36665532 1 123556666655544443 35788999999997421 111111
Q ss_pred -------HHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCC
Q 021767 147 -------ACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVP 219 (308)
Q Consensus 147 -------~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 219 (308)
.-++.-+|+.+.|+|.+. +. .+++++.+++.+++|+..+||+-.--.+.++++++ .++.
T Consensus 182 v~l~vEvd~~ri~kR~~~g~ld~~~--------~~--ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~----~~i~ 247 (546)
T PF01175_consen 182 VGLIVEVDPSRIEKRLEQGYLDEVT--------DD--LDEALARAKEARAKKEPLSIGLLGNAADLWEELVE----RGII 247 (546)
T ss_dssp EEEEEES-HHHHHHHHHTTSSSEEE--------SS--HHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHH----TT--
T ss_pred eEEEEEECHHHHHHHHhCCCeeEEc--------CC--HHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHH----cCCC
Confidence 123444678889999643 11 24589999999999999999998766666776654 3555
Q ss_pred cee--eeecc
Q 021767 220 LCS--AQVQF 227 (308)
Q Consensus 220 ~~~--~Q~~~ 227 (308)
|++ -|...
T Consensus 248 pDl~tDQTS~ 257 (546)
T PF01175_consen 248 PDLVTDQTSA 257 (546)
T ss_dssp -SEE---SST
T ss_pred CCcccCCCcc
Confidence 555 47765
No 115
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=50.34 E-value=1.8e+02 Score=25.61 Aligned_cols=112 Identities=10% Similarity=0.095 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC-ccEEEeecC------CHHHHHHHHHH
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNY------GPNQLVKIHDY 212 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~------~~~~l~~~~~~ 212 (308)
.++.+..+++...+. .- .+- +++|.-.............+-+++|++.|. |-.||+=.| ++..+...++.
T Consensus 101 G~~~i~~af~~ar~~-~P-~a~-l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~ 177 (254)
T smart00633 101 GEDYIEKAFRYAREA-DP-DAK-LFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDR 177 (254)
T ss_pred ChHHHHHHHHHHHHh-CC-CCE-EEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHH
Confidence 346667777655443 22 223 334421111111223357888999999999 999998655 46777777776
Q ss_pred HHHcCCCceeeeeccCcccCCcc----hhhHHHHHHHhC--CcEEEcc
Q 021767 213 LTARGVPLCSAQVQFSLLSMGEN----QLEIKNICDSLG--IRLISYS 254 (308)
Q Consensus 213 ~~~~~~~~~~~Q~~~~~~~~~~~----~~~l~~~~~~~g--i~v~a~s 254 (308)
....|.++.+-.+.+........ -.++++.|.++. .+|+-|.
T Consensus 178 ~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg 225 (254)
T smart00633 178 FASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWG 225 (254)
T ss_pred HHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeC
Confidence 66677776665555543221000 136888898875 5666664
No 116
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=50.24 E-value=1e+02 Score=29.41 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=55.7
Q ss_pred ccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhh
Q 021767 160 IGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLE 238 (308)
Q Consensus 160 iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~ 238 (308)
.++.++..|- +.+ -++.+.+|++.-.+. ..|=|-++...+..+++. ..++++|+...-.---..-.+
T Consensus 232 ~~l~~iEeP~----~~~---d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~k 299 (404)
T PRK15072 232 YRLFWLEDPT----PAE---NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRR 299 (404)
T ss_pred cCCcEEECCC----Ccc---CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHH
Confidence 4677777542 111 257788888887666 567777888888887663 247888876654321112247
Q ss_pred HHHHHHHhCCcEEEccc
Q 021767 239 IKNICDSLGIRLISYSP 255 (308)
Q Consensus 239 l~~~~~~~gi~v~a~sp 255 (308)
+.++|+.+|+.++....
T Consensus 300 ia~lA~~~gi~~~~h~~ 316 (404)
T PRK15072 300 IADFAALYQVRTGSHGP 316 (404)
T ss_pred HHHHHHHcCCceeeccC
Confidence 89999999999987543
No 117
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=50.21 E-value=19 Score=27.16 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccc
Q 021767 200 NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSP 255 (308)
Q Consensus 200 n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 255 (308)
.++...+.++++. -.++++|+...-+--=.+-..+.++|+++|+.++..+.
T Consensus 4 ~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 4 LFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp SSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 3455555555542 23566666543321101123677788888888777665
No 118
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=49.80 E-value=1.9e+02 Score=25.73 Aligned_cols=10 Identities=10% Similarity=-0.157 Sum_probs=6.5
Q ss_pred cccEEEecCC
Q 021767 159 QIGIGQLHWS 168 (308)
Q Consensus 159 ~iDl~~lH~~ 168 (308)
-+|++-|--|
T Consensus 37 Gad~iElGiP 46 (256)
T TIGR00262 37 GADALELGVP 46 (256)
T ss_pred CCCEEEECCC
Confidence 4677777765
No 119
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.66 E-value=80 Score=29.31 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=86.8
Q ss_pred CCCCCcceeecC-CceeCcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcCCC--ceeCCcCCCCCCCCCchHHHHH
Q 021767 34 PLFWPWEKVKMG-PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGIN--LFDTADSYGTGRLNGKSEKLLG 110 (308)
Q Consensus 34 ~~~~~m~~~~lg-g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~Gi~--~~DtA~~Yg~~~~~g~sE~~lG 110 (308)
+.-.+|++..++ |..+-.+|+|. +|. - .+++|...|.+ .||+++.= -|
T Consensus 169 TvYspLk~~g~~pG~~vgI~GlGG--LGh------------~---aVq~AKAMG~rV~vis~~~~k--------ke---- 219 (360)
T KOG0023|consen 169 TVYSPLKRSGLGPGKWVGIVGLGG--LGH------------M---AVQYAKAMGMRVTVISTSSKK--------KE---- 219 (360)
T ss_pred EEeehhHHcCCCCCcEEEEecCcc--cch------------H---HHHHHHHhCcEEEEEeCCchh--------HH----
Confidence 444678999998 99999999997 552 1 26677777765 66765321 23
Q ss_pred HHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc
Q 021767 111 KFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK 190 (308)
Q Consensus 111 ~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~ 190 (308)
++++.+. -|.||.+.- +++. .+++..++. .+++.+--+--| + +-..+.-||..
T Consensus 220 ea~~~LG------Ad~fv~~~~-------d~d~-~~~~~~~~d-g~~~~v~~~a~~-------~-----~~~~~~~lk~~ 272 (360)
T KOG0023|consen 220 EAIKSLG------ADVFVDSTE-------DPDI-MKAIMKTTD-GGIDTVSNLAEH-------A-----LEPLLGLLKVN 272 (360)
T ss_pred HHHHhcC------cceeEEecC-------CHHH-HHHHHHhhc-Ccceeeeecccc-------c-----hHHHHHHhhcC
Confidence 4455532 345555442 2333 334444433 333333322111 1 33577889999
Q ss_pred CCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcE
Q 021767 191 GLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRL 250 (308)
Q Consensus 191 G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v 250 (308)
|++-.+|+-+- +..+.-+- .-+-...+-.|.+-...+.++++++|.+++|..
T Consensus 273 Gt~V~vg~p~~-~~~~~~~~-------lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 273 GTLVLVGLPEK-PLKLDTFP-------LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred CEEEEEeCcCC-cccccchh-------hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 99999999664 22222110 012223445555443444458999999998764
No 120
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=49.40 E-value=2.6e+02 Score=27.22 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=59.5
Q ss_pred eCCcCCCCCCCCCchHHHHHHHHhhCCCCCC-CCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCC----cccEEEe
Q 021767 91 DTADSYGTGRLNGKSEKLLGKFISEIPGQKQ-VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIE----QIGIGQL 165 (308)
Q Consensus 91 DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~-~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d----~iDl~~l 165 (308)
+..-+||. |+.|-++|++..+ .. ..+=++|.|-+... .--++|..-+++.-+++.-+ .+.++.+
T Consensus 66 E~dvVfGG-------~~kL~~aI~~~~~-~~~~p~~I~V~ttC~~e---iIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v 134 (457)
T TIGR02932 66 EESAVFGG-------AKRIEEGVLTLAR-RYPNLRVIPIITTCSTE---TIGDDIEGSIRKVNRALKKEFPDRKIKLVPV 134 (457)
T ss_pred CCceEECc-------HHHHHHHHHHHHH-hCCCCCEEEEECCchHH---hhcCCHHHHHHHHHhhhhhhcCCCCCeEEEe
Confidence 44457887 8888888876431 01 12347777776321 11223333333322222111 4688999
Q ss_pred cCCCCCCCCh-hHHHHHHHHHH-HH-----HcCCccEEEeecCCHHHHHHHHHHHHHcCCCce
Q 021767 166 HWSTANYAPP-QELALWNGLVA-MY-----EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLC 221 (308)
Q Consensus 166 H~~~~~~~~~-~~~~~~~~l~~-l~-----~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 221 (308)
|.|+..-... ....++++|-+ +. ++++|.-||-.+ ++..+.++.+.+...|+.+.
T Consensus 135 ~tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn 196 (457)
T TIGR02932 135 HTPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDAN 196 (457)
T ss_pred eCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEE
Confidence 9886442111 11223333332 21 246677776443 35556666666666665543
No 121
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=48.89 E-value=1.5e+02 Score=24.47 Aligned_cols=98 Identities=10% Similarity=0.055 Sum_probs=53.5
Q ss_pred CccEEEeecCCHHHHH---HHHHHHHHc-CCCceeeeeccCcccCCc-------ch-----hhHHHHHHHhCCcEEEccc
Q 021767 192 LVRAVGVSNYGPNQLV---KIHDYLTAR-GVPLCSAQVQFSLLSMGE-------NQ-----LEIKNICDSLGIRLISYSP 255 (308)
Q Consensus 192 ~ir~iGvSn~~~~~l~---~~~~~~~~~-~~~~~~~Q~~~~~~~~~~-------~~-----~~l~~~~~~~gi~v~a~sp 255 (308)
.|...|+++.+..++. ++....... ...+.++++-.|=..... ++ ..+++.++++|+.++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 4666788877766543 222222211 234555666555433321 11 3588889999999888777
Q ss_pred ccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 256 LGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 256 l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
.... .+.... ...+...+..+.++++|+++|+..
T Consensus 116 ~~~~----~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 116 VTRR----TFDEGG-----------KVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred cccc----ccCCCC-----------cccccchhHHHHHHHHHHHhCCCE
Confidence 5421 111000 011233444578899999998764
No 122
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=48.74 E-value=1.7e+02 Score=28.30 Aligned_cols=121 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceeCCcCCCCCC-----CCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 76 QQTFNLAVENGINLFDTADSYGTGR-----LNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 76 ~~~l~~A~e~Gi~~~DtA~~Yg~~~-----~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
.+.++...+.|+|.+.-+-.-.++. .-+.+.+.+-++++...+.++..-.+.+..-+... +.+.+.+.++.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq----t~e~~~~tl~~ 227 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQ----TVESFRETLDK 227 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC----CHHHHHHHHHH
Q ss_pred HHHhhCCCcccEEEe-cCCC------------CCCCChhHHHHHHHHHHHHHcCCccEEEeecCC
Q 021767 151 SLARLQIEQIGIGQL-HWST------------ANYAPPQELALWNGLVAMYEKGLVRAVGVSNYG 202 (308)
Q Consensus 151 sL~~L~~d~iDl~~l-H~~~------------~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 202 (308)
.+ +|+.+++.+|-+ |.|. .............+.+.|.+.|..+ +|++||.
T Consensus 228 ~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~fa 290 (453)
T PRK13347 228 VI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHFA 290 (453)
T ss_pred HH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-Eecccee
No 123
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=48.27 E-value=2.1e+02 Score=27.65 Aligned_cols=63 Identities=14% Similarity=0.290 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEe-cCCCC--------CC-CC--hhHHHHHH-HHHHHHHcCCccEEEeecCCH
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQL-HWSTA--------NY-AP--PQELALWN-GLVAMYEKGLVRAVGVSNYGP 203 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~l-H~~~~--------~~-~~--~~~~~~~~-~l~~l~~~G~ir~iGvSn~~~ 203 (308)
.+.+.+++.++..++ |+.+++.+|.+ +.|.. .. .+ .+..+.++ +.+.|.+.|. ..++++||.-
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 378888888887665 89999988877 22210 00 11 11112223 4455666775 5599999874
No 124
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=48.25 E-value=93 Score=28.21 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeee
Q 021767 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQ 224 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q 224 (308)
+..+-+.|.++|+++|++-.++.| ...|..... ++.+..+.+...++...++ -+...++.+.+. .++.+.
T Consensus 28 k~~ia~~L~~~Gv~~IEvgsf~~p--~~~p~~~d~-~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~------g~~~v~ 97 (287)
T PRK05692 28 KIALIDRLSAAGLSYIEVASFVSP--KWVPQMADA-AEVMAGIQRRPGVTYAALT-PNLKGLEAALAA------GADEVA 97 (287)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCc--ccccccccH-HHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc------CCCEEE
Q ss_pred eccCcccCCcchh-------------hHHHHHHHhCCcEEEc
Q 021767 225 VQFSLLSMGENQL-------------EIKNICDSLGIRLISY 253 (308)
Q Consensus 225 ~~~~~~~~~~~~~-------------~l~~~~~~~gi~v~a~ 253 (308)
+-++.-+.-...+ +.+++++++|+.+.++
T Consensus 98 i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 98 VFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
No 125
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=48.10 E-value=1.1e+02 Score=28.67 Aligned_cols=99 Identities=7% Similarity=-0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeee
Q 021767 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQ 224 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q 224 (308)
+..+-+.|.++|+++|++-..-.|..-..--+..++.+.+..+.. ++..+++- +...++.+++. ..+.+.
T Consensus 70 Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~---~~~~~l~~-n~~die~A~~~------g~~~v~ 139 (347)
T PLN02746 70 KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEG---ARFPVLTP-NLKGFEAAIAA------GAKEVA 139 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccC---CceeEEcC-CHHHHHHHHHc------CcCEEE
Q ss_pred eccCc--------ccCCcch-----hhHHHHHHHhCCcEEEc
Q 021767 225 VQFSL--------LSMGENQ-----LEIKNICDSLGIRLISY 253 (308)
Q Consensus 225 ~~~~~--------~~~~~~~-----~~l~~~~~~~gi~v~a~ 253 (308)
+.++. +++..++ .+++++++++|+.+.++
T Consensus 140 i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 140 VFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
No 126
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=48.02 E-value=2.1e+02 Score=25.74 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHH---HHHHHHHHHHHcCCc-cEEEeecCCHHHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQEL---ALWNGLVAMYEKGLV-RAVGVSNYGPNQLVKIHDYL 213 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~---~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~ 213 (308)
..+.+.+++-++..++.+|++- +++-....+...++.+ .+++...+.. .|++ --+|++..+..+..++.+.+
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~g---i~~~GstGE~~~Lt~~Er~~~~~~~~~~~-~~~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDG---LYVNGSTGEGFLLSVEERKQIAEIVAEAA-KGKVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCE---EEECcCCcCcccCCHHHHHHHHHHHHHHh-CCCCeEEeccCCCCHHHHHHHHHHH
Confidence 5688889998888888667654 5554332232333333 3344333333 3554 34589888887777777778
Q ss_pred HHcCCCceeeeeccCcccCCcchhhHHHH----HHHh-CCcEEEccc
Q 021767 214 TARGVPLCSAQVQFSLLSMGENQLEIKNI----CDSL-GIRLISYSP 255 (308)
Q Consensus 214 ~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~----~~~~-gi~v~a~sp 255 (308)
.+.|..-.++..+|..- ..+++++++ |+.- ++.++.|.-
T Consensus 93 ~~~Gad~v~~~~P~y~~---~~~~~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 93 EELGYDAISAITPFYYK---FSFEEIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred HHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 88776544444444321 233356554 4555 789988854
No 127
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=47.54 E-value=68 Score=24.78 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCC--ceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCC-CCCCCCCCCCchhhhhhcc
Q 021767 206 LVKIHDYLTARGVP--LCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTG-KYTPSKLPRGPRALLFRQI 282 (308)
Q Consensus 206 l~~~~~~~~~~~~~--~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~-~~~~~~~~~~~~~~~~~~~ 282 (308)
++++++.+...++. +||-..++|- ........+-..+.+.||..+=+.-||.-.-.. .|..+. ........|...
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~-~~~~~k~~l~~~l~~~gi~Y~~~~~Lg~~~~~r~~~~~~~-~~~~f~~~Y~~~ 79 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSR-KPGFNKEDLASFLEEAGIEYVWLPELGPSRELRKWYHEDP-DWDEFFERYRAE 79 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCC-CCCCCHHHHHHHHHHCCceEeechhhcCcccchhhhcccc-cHHHHHHHHHHH
Confidence 34555555556654 4444555555 445556678889999999988777766532111 122111 112222234432
Q ss_pred c---cChHHHHHHHHHHHHHh
Q 021767 283 L---PGLKPLLRSLKEIAERR 300 (308)
Q Consensus 283 ~---~~~~~~~~~l~~ia~~~ 300 (308)
. +...+.++.|.+++.+.
T Consensus 80 l~~~~~~~~~l~~L~~~~~~~ 100 (122)
T PF04343_consen 80 LESNPEFQEGLERLAELAREG 100 (122)
T ss_pred HcccHhHHHHHHHHHHHHcCC
Confidence 2 33456666777666654
No 128
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=47.19 E-value=2.7e+02 Score=26.79 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=48.9
Q ss_pred ccEEEecCCCCCCCChhHHHHHHHHHHHHHcC--CccEEEeec--CCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcc
Q 021767 160 IGIGQLHWSTANYAPPQELALWNGLVAMYEKG--LVRAVGVSN--YGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGEN 235 (308)
Q Consensus 160 iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvSn--~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~ 235 (308)
.+++++-.|- +.+ -|+.+.+|.+.- .+.-+|==+ .+...+.++++. -..+++|+..+-+-.=.+
T Consensus 278 ~~i~~iEdPl----~~~---D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~-----~a~d~v~ik~~~iGGIte 345 (425)
T TIGR01060 278 YPIVSIEDGL----SEE---DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM-----GVANSILIKPNQIGTLTE 345 (425)
T ss_pred CCcEEEEcCC----Ccc---cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh-----CCCCEEEecccccCCHHH
Confidence 4677777442 111 267777776664 555444222 247777777653 346777777665422122
Q ss_pred hhhHHHHHHHhCCcEEE
Q 021767 236 QLEIKNICDSLGIRLIS 252 (308)
Q Consensus 236 ~~~l~~~~~~~gi~v~a 252 (308)
-.++.+.|+.+|+.++.
T Consensus 346 a~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 346 TLDAVELAKKAGYTAVI 362 (425)
T ss_pred HHHHHHHHHHcCCcEEE
Confidence 34789999999999654
No 129
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=46.99 E-value=1.7e+02 Score=27.27 Aligned_cols=122 Identities=15% Similarity=0.065 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCCceeCCcCCCCCC-----CCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 76 QQTFNLAVENGINLFDTADSYGTGR-----LNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 76 ~~~l~~A~e~Gi~~~DtA~~Yg~~~-----~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
.+.++...+.|+|.+-..-.-.++. +-+.+-..+-++++...+.+. +.|-+-.=+|.+ .-+.+.+++.++.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~--~~v~iDli~GlP--gqt~~~~~~~l~~ 173 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGF--ENISIDLIYDTP--LDNKKLLKEELKL 173 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CEEEEEeecCCC--CCCHHHHHHHHHH
Confidence 3556666777999873322211100 002333344445544211111 112122222322 3378888888877
Q ss_pred HHHhhCCCcccEEEecC-CCCCC------CChhHHHHHHHHHHHHHcCCccEEEeecCCH
Q 021767 151 SLARLQIEQIGIGQLHW-STANY------APPQELALWNGLVAMYEKGLVRAVGVSNYGP 203 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~-~~~~~------~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 203 (308)
.+ +|+.+++.+|.+.- |.... .+.+..-...+.+.|.+.|. ..+++|||.-
T Consensus 174 ~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 174 AK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred HH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 65 49999999988863 21100 01122223345566777785 4588888864
No 130
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=46.21 E-value=2.3e+02 Score=25.78 Aligned_cols=151 Identities=13% Similarity=0.056 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCC---CCCch----HHHHHHHHhhCCC--CCCCCCCEEEEeccCCCC-----
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGR---LNGKS----EKLLGKFISEIPG--QKQVQNNIVIATKFAAYP----- 136 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~---~~g~s----E~~lG~~L~~~~~--~~~~R~~v~i~tK~~~~~----- 136 (308)
.++...++-+..+++|-+.|.|.....+.. ..|.. +++.-.+++-..+ ....+.+++|+.=+|+..
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~ 123 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLAD 123 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCC
Confidence 445667777888999999999988765521 22322 3444444331110 001122588888888643
Q ss_pred -------CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc--CCccEEEeecC------
Q 021767 137 -------WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GLVRAVGVSNY------ 201 (308)
Q Consensus 137 -------~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~------ 201 (308)
+..+.+.+++...+..+.|--..+|++++--. ... .++..+++.+++. ++--.+.++--
T Consensus 124 ~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~----~~~--~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~ 197 (304)
T PRK09485 124 GSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETI----PNL--DEAEALVELLKEEFPGVPAWLSFTLRDGTHIS 197 (304)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecc----CCH--HHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCC
Confidence 12467888888888888886567999999843 111 2344455555544 55444444421
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccC
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFS 228 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~ 228 (308)
+...++++++.+... ..++++-+++.
T Consensus 198 ~G~~~~~~~~~l~~~-~~~~~iGiNC~ 223 (304)
T PRK09485 198 DGTPLAEAAALLAAS-PQVVAVGVNCT 223 (304)
T ss_pred CCCCHHHHHHHHhcC-CCceEEEecCC
Confidence 112345555544321 23677777775
No 131
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=46.12 E-value=2.2e+02 Score=26.65 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=58.2
Q ss_pred EEecCCCCCC----CCh----hHHHHHHHHHHHHH-cCC---ccEEEee--cCCHHHHHHHHHHHHHcCCCceeeeeccC
Q 021767 163 GQLHWSTANY----APP----QELALWNGLVAMYE-KGL---VRAVGVS--NYGPNQLVKIHDYLTARGVPLCSAQVQFS 228 (308)
Q Consensus 163 ~~lH~~~~~~----~~~----~~~~~~~~l~~l~~-~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~ 228 (308)
+-||.++++. .|. ..+.+++++.++.+ .|+ |+++=+. |-+.+++.++.+.++. .++.++-++||
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn 296 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG--TKCKVNLIPWN 296 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCceEEEecc
Confidence 6689775321 111 23557777776544 443 4444333 4456888888887653 45677888999
Q ss_pred cccCC----cch---hhHHHHHHHhCCcEEEcccccc
Q 021767 229 LLSMG----ENQ---LEIKNICDSLGIRLISYSPLGL 258 (308)
Q Consensus 229 ~~~~~----~~~---~~l~~~~~~~gi~v~a~spl~~ 258 (308)
+.... +.. ..+.++.+++|+.+......|.
T Consensus 297 p~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 297 PFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 86532 111 2356677888999988777765
No 132
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=46.10 E-value=1.3e+02 Score=26.00 Aligned_cols=123 Identities=10% Similarity=0.066 Sum_probs=59.3
Q ss_pred CcHHHHHHHHHHHHHc-----CCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHH
Q 021767 70 SMDSQLQQTFNLAVEN-----GINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQF 144 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~-----Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i 144 (308)
.++++..+.++.+++. |+|----+....+ +..+...++.+. .|.-+||=++.... .
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~-------~~~m~~vl~~l~----~~gl~FvDS~T~~~-------s- 131 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSD-------REAMRWVLEVLK----ERGLFFVDSRTTPR-------S- 131 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC--------HHHHHHHHHHHH----HTT-EEEE-S--TT---------
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCC-------HHHHHHHHHHHH----HcCCEEEeCCCCcc-------c-
Confidence 5678899999999987 5554433333343 666666665542 47778886776322 1
Q ss_pred HHHHHHHHHhhCCCc--ccEEEecCCCCCCCChhH-HHHHHHHHHHHHcCCccEEEeecC-CHHHHHHHHHHHHHcC
Q 021767 145 VNACRASLARLQIEQ--IGIGQLHWSTANYAPPQE-LALWNGLVAMYEKGLVRAVGVSNY-GPNQLVKIHDYLTARG 217 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~--iDl~~lH~~~~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~ 217 (308)
...+.-+++|+.+ .|+|+=| ..+.... .++-++....+++|.+-.||=..- +.+.|.++....+..|
T Consensus 132 --~a~~~A~~~gvp~~~rdvfLD~----~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~Tl~~L~~~~~~l~~~g 202 (213)
T PF04748_consen 132 --VAPQVAKELGVPAARRDVFLDN----DQDEAAIRRQLDQAARIARKQGSAIAIGHPRPETLEALEEWLPELEAQG 202 (213)
T ss_dssp --SHHHHHHHCT--EEE-SEETTS----T-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHcCCCEEeeceecCC----CCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCHHHHHHHHHHHhHHhhCC
Confidence 1333445566542 3543323 1111111 233445556777888666664322 2344555544444444
No 133
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=46.03 E-value=1.2e+02 Score=26.52 Aligned_cols=35 Identities=6% Similarity=0.111 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHH
Q 021767 179 ALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLT 214 (308)
Q Consensus 179 ~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 214 (308)
++.+.|+.|++.|.--.| +||.+...+..+++...
T Consensus 103 g~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~g 137 (253)
T TIGR01422 103 GVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAA 137 (253)
T ss_pred CHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHH
Confidence 367889999999854444 67767777776665543
No 134
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=46.02 E-value=2.8e+02 Score=26.56 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=19.7
Q ss_pred CCccEEEeecCC---HHHHHHHHHHHHHcCCCc
Q 021767 191 GLVRAVGVSNYG---PNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 191 G~ir~iGvSn~~---~~~l~~~~~~~~~~~~~~ 220 (308)
..|.-||.++.+ +..+.++.+.++..|+.+
T Consensus 163 ~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v 195 (430)
T cd01981 163 PSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEV 195 (430)
T ss_pred CcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeE
Confidence 568888887643 556666666666666654
No 135
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=45.87 E-value=69 Score=31.37 Aligned_cols=132 Identities=17% Similarity=0.125 Sum_probs=82.9
Q ss_pred HHHHHHcCCCce--eCCcCCC---C-CCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHH-------
Q 021767 79 FNLAVENGINLF--DTADSYG---T-GRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFV------- 145 (308)
Q Consensus 79 l~~A~e~Gi~~~--DtA~~Yg---~-~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~------- 145 (308)
.+..-+.|+..+ -||..|- . |.-.|..|.++.-+-+.+.. -.+.++||++-+|.-.. ..+..+.
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~--~L~G~~~lTaGLGGMgG-AQPlA~~mag~v~i 185 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGG--SLKGKWVLTAGLGGMGG-AQPLAVTMNGGVSI 185 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCC--CCceeEEEEeCCCcccc-ccHHHHHHcCceEE
Confidence 455567788866 3555442 1 33557788887666655432 36888999999874210 0111110
Q ss_pred ---HHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCcee
Q 021767 146 ---NACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCS 222 (308)
Q Consensus 146 ---~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 222 (308)
-.-.+.-+|+.+.|+|.+. + +.+++++..++.+++|+..+||+-.--.+.++++.+ .++.|++
T Consensus 186 ~vEvd~~ri~kR~~~gyld~~~--------~--~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~----r~i~pDl 251 (545)
T TIGR01228 186 AVEVDESRIDKRLETKYCDEQT--------D--SLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLK----RGVVPDV 251 (545)
T ss_pred EEEECHHHHHHHHhcCcceeEc--------C--CHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHH----cCCCCCC
Confidence 0123344688899999632 1 124588999999999999999998866777777655 3555555
Q ss_pred --eeecc
Q 021767 223 --AQVQF 227 (308)
Q Consensus 223 --~Q~~~ 227 (308)
-|...
T Consensus 252 vtDQTSa 258 (545)
T TIGR01228 252 VTDQTSA 258 (545)
T ss_pred cCCCCcc
Confidence 47655
No 136
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=45.64 E-value=1.5e+02 Score=25.63 Aligned_cols=77 Identities=14% Similarity=0.317 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHH
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACR 149 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e 149 (308)
+++++.....+.+.+.|..|+=|+.-|+. .|.+..-+ +.+++. .+++ +-.|...- -.+.+...+-++
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~---~gat~~dv-~~m~~~-----v~~~--v~IKaaGG--irt~~~a~~~i~ 195 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGA---GGATVEDV-RLMRNT-----VGDT--IGVKASGG--VRTAEDAIAMIE 195 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCC---CCCCHHHH-HHHHHH-----hccC--CeEEEeCC--CCCHHHHHHHHH
Confidence 45577789999999999999999988874 14333332 222231 1222 23333211 127788888888
Q ss_pred HHHHhhCCCc
Q 021767 150 ASLARLQIEQ 159 (308)
Q Consensus 150 ~sL~~L~~d~ 159 (308)
.--.|+|+++
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 8889999875
No 137
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=44.93 E-value=72 Score=31.06 Aligned_cols=65 Identities=18% Similarity=0.116 Sum_probs=39.1
Q ss_pred HhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEee-cCCHHHHHHHHHHHHHcCCCceeeeeccCc
Q 021767 153 ARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS-NYGPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~ 229 (308)
..+|.|++-+++... ...+. +.+ ..+.+.+... ++.+||- |-+++.+.++.+. ..++++|++-+-
T Consensus 274 ~~~GaD~lGfIf~~~-SpR~V--~~~-~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~e 339 (454)
T PRK09427 274 YDAGAVYGGLIFVEK-SPRYV--SLE-QAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGDE 339 (454)
T ss_pred HhCCCCEEeeEeCCC-CCCCC--CHH-HHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCCC
Confidence 457899988864432 11222 222 2233322222 8899987 6677777776554 568999998753
No 138
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=44.91 E-value=1.2e+02 Score=26.79 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHH
Q 021767 179 ALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYL 213 (308)
Q Consensus 179 ~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 213 (308)
++.+.|+.|+++|..-.| +||.+...+..+++..
T Consensus 105 g~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~ 138 (267)
T PRK13478 105 GVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLA 138 (267)
T ss_pred CHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHH
Confidence 367788899999863333 5666666666655543
No 139
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=44.82 E-value=2.7e+02 Score=26.07 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=80.3
Q ss_pred CcceeccCccCCCCcCCCCCCcHHHHHHHHHHHHHcC---CCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCE
Q 021767 50 SPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENG---INLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNI 126 (308)
Q Consensus 50 s~lglG~~~~g~~~~~~~~~~~~~~~~~~l~~A~e~G---i~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v 126 (308)
..++--|..+-..........++++..+++....+.- +-.+|..+..+.+ -..+-+.+. .+.-+
T Consensus 28 ~~~C~RC~~l~hy~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~------~~~l~~~~~-------~~pii 94 (360)
T TIGR03597 28 EVYCQRCFRLKHYNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL------IPELKRFVG-------GNPVL 94 (360)
T ss_pred CeeecchhhhhccCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc------cHHHHHHhC-------CCCEE
Confidence 3455555554322111122346677777766665432 3356765544431 112223322 24568
Q ss_pred EEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHH
Q 021767 127 VIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQL 206 (308)
Q Consensus 127 ~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 206 (308)
+|.+|+--.+.....+.+.+-+.+.++.++....|++.+.-- ......++++.+.++.+.+.+--+|.+|.+-..+
T Consensus 95 lV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk----~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 95 LVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAK----KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred EEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCC----CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 899999643333345666666666677777654566666532 2223445778887776667889999999986554
Q ss_pred HH
Q 021767 207 VK 208 (308)
Q Consensus 207 ~~ 208 (308)
-.
T Consensus 171 iN 172 (360)
T TIGR03597 171 IN 172 (360)
T ss_pred HH
Confidence 43
No 140
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=44.65 E-value=1.4e+02 Score=26.01 Aligned_cols=72 Identities=17% Similarity=0.078 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHHHHHhhC--------------------------CCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcC
Q 021767 138 RLTPGQFVNACRASLARLQ--------------------------IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG 191 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G 191 (308)
+.+...+++.+++.-++|+ +...+++++..|....+-.....+.+.+.+++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 3466666777666666665 34456666665543322233445778889999999
Q ss_pred CccEEEeecCCHHHHHHHHH
Q 021767 192 LVRAVGVSNYGPNQLVKIHD 211 (308)
Q Consensus 192 ~ir~iGvSn~~~~~l~~~~~ 211 (308)
+ .|=+|+|...+++.+.+
T Consensus 184 r--~viFSSH~m~EvealCD 201 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCD 201 (245)
T ss_pred c--EEEEecccHHHHHHhhh
Confidence 8 57788888777665533
No 141
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=44.55 E-value=2.5e+02 Score=25.75 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=73.5
Q ss_pred CcHHHHHHHHHHHHHc-CCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHH
Q 021767 70 SMDSQLQQTFNLAVEN-GINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~-Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~ 148 (308)
.+.++..+++++..+. ||+-+--+. |. +.-.+...+.+.++...+ ......+.|.|+.-.. .+..+...+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GD--Pl~~~~~~L~~ll~~l~~-i~~v~~iri~Tr~~v~----~p~rit~el 189 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GD--PLVLSPRRLGDIMARLAA-IDHVKIVRFHTRVPVA----DPARVTPAL 189 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CC--cccCCHHHHHHHHHHHHh-CCCccEEEEeCCCccc----ChhhcCHHH
Confidence 3557778888877655 777542211 11 111122333343333211 0123346777776321 233344455
Q ss_pred HHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEE------EeecCCHHHHHHHHHHHHHcCCC
Q 021767 149 RASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAV------GVSNYGPNQLVKIHDYLTARGVP 219 (308)
Q Consensus 149 e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i------GvSn~~~~~l~~~~~~~~~~~~~ 219 (308)
-+.|++.|. . ..+.+|..... .+ ..+++++++.|++.|..-.+ |+ |.+.+.+.++.+.+...++.
T Consensus 190 l~~L~~~g~-~-v~i~l~~~h~~--el-~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 190 IAALKTSGK-T-VYVALHANHAR--EL-TAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIK 260 (321)
T ss_pred HHHHHHcCC-c-EEEEecCCChh--hc-CHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCe
Confidence 556666663 2 35777854221 11 24689999999999962111 43 67788888888877777764
No 142
>PRK05414 urocanate hydratase; Provisional
Probab=44.50 E-value=78 Score=31.15 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=82.7
Q ss_pred HHHHHHcCCCce--eCCcCCC---C-CCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHH-------
Q 021767 79 FNLAVENGINLF--DTADSYG---T-GRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFV------- 145 (308)
Q Consensus 79 l~~A~e~Gi~~~--DtA~~Yg---~-~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~------- 145 (308)
.+..-+.|+..+ -||..|- . |.-.|..|.++.-+-+.+. +-.+.++||++-+|.-.. ..+..+.
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~--g~L~G~~~lTaGLGGMgG-AQPlA~~mag~v~i 194 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG--GDLAGRLVLTAGLGGMGG-AQPLAATMAGAVCL 194 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC--CCCceeEEEEecCCcccc-ccHHHHHhcCceEE
Confidence 455566788766 3565442 1 2355778888766655542 246888999999874210 0111100
Q ss_pred ---HHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCcee
Q 021767 146 ---NACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCS 222 (308)
Q Consensus 146 ---~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 222 (308)
-.-.+.-+|+.+.|+|.+. .. .+++++..++.+++|+..+||+-.--.+.++++++ .++.|++
T Consensus 195 ~vEvd~~ri~kR~~~gyld~~~--------~~--Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~----~~i~pDl 260 (556)
T PRK05414 195 AVEVDESRIDKRLRTGYLDEKA--------DD--LDEALALAEEAKAAGEPLSIGLLGNAADVLPELVR----RGIRPDL 260 (556)
T ss_pred EEEECHHHHHHHHhCCcceeEc--------CC--HHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHH----cCCCCCc
Confidence 0123344788899999632 11 24588999999999999999998866777777654 3555555
Q ss_pred --eeecc
Q 021767 223 --AQVQF 227 (308)
Q Consensus 223 --~Q~~~ 227 (308)
-|...
T Consensus 261 vtDQTSa 267 (556)
T PRK05414 261 VTDQTSA 267 (556)
T ss_pred cCcCccc
Confidence 47655
No 143
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=44.46 E-value=2e+02 Score=25.04 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=28.0
Q ss_pred hHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 238 EIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
..++.|++.|...+... .|...++ .+. ........+.++.+.++|+++|++.
T Consensus 88 ~~i~~a~~lg~~~i~~~---~g~~~~~--------~~~----~~~~~~~~~~l~~l~~~A~~~gi~l 139 (254)
T TIGR03234 88 LAIAYARALGCPQVNCL---AGKRPAG--------VSP----EEARATLVENLRYAADALDRIGLTL 139 (254)
T ss_pred HHHHHHHHhCCCEEEEC---cCCCCCC--------CCH----HHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 57888999998877421 1211110 000 1111233455667777888888754
No 144
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=44.34 E-value=2.6e+02 Score=26.35 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=58.0
Q ss_pred CcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCC
Q 021767 93 ADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANY 172 (308)
Q Consensus 93 A~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~ 172 (308)
.-.||. |+.|-+++++..+ ..+.+=++|.|-+-.. .--+++..-+++.-++.+ +.++.+|.++...
T Consensus 66 d~V~Gg-------~~~L~~~i~~~~~-~~~P~~i~v~~tC~~~---~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g 131 (406)
T cd01967 66 DIVFGG-------EKKLKKAIKEAYE-RFPPKAIFVYSTCPTG---LIGDDIEAVAKEASKELG---IPVIPVNCEGFRG 131 (406)
T ss_pred ceeeCc-------HHHHHHHHHHHHH-hCCCCEEEEECCCchh---hhccCHHHHHHHHHHhhC---CCEEEEeCCCeeC
Confidence 345675 7888888876421 1234447777776321 112223333333223343 7899999875432
Q ss_pred -C-ChhHHHHHHHHHHHH---------HcCCccEEEeecCCHHHHHHHHHHHHHcCCC
Q 021767 173 -A-PPQELALWNGLVAMY---------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVP 219 (308)
Q Consensus 173 -~-~~~~~~~~~~l~~l~---------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 219 (308)
. ......++++|-+.. +.+.|.-||..++. ..+.++.+.++..|+.
T Consensus 132 ~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gi~ 188 (406)
T cd01967 132 VSQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIG-GDAWVIKPLLEELGIR 188 (406)
T ss_pred CcccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccc-hhHHHHHHHHHHcCCE
Confidence 1 112233455544332 34568888987653 3445555555555544
No 145
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=44.33 E-value=2.3e+02 Score=25.23 Aligned_cols=122 Identities=9% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCcccEEEecCCCCCCCCh-hHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCC-ceee
Q 021767 146 NACRASLARLQIEQIGIGQLHWSTANYAPP-QELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVP-LCSA 223 (308)
Q Consensus 146 ~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~-~~~~ 223 (308)
+...+.++.|--.-+|++-|-.| ..+|+ +-.-+.++-.+..++|. +.+++-++++..+..... |.++
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGiP--fSDP~aDGpvIq~a~~~AL~~G~---------~~~~~~~~~~~~r~~~~~~p~vl 94 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGIP--FSDPVADGPVIQAASLRALAAGV---------TLADVFELVREIREKDPTIPIVL 94 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCC--CCCCcccCHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHhcCCCCCEEE
Q ss_pred eeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCC
Q 021767 224 QVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKT 303 (308)
Q Consensus 224 Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 303 (308)
+.-||++.+.-.+ ++++.|++.|+.=+. ..+-..+-.+.+.+.|++||..
T Consensus 95 m~Y~N~i~~~G~e-~f~~~~~~aGvdGvi-----------------------------ipDLp~ee~~~~~~~~~~~gl~ 144 (258)
T PRK13111 95 MTYYNPIFQYGVE-RFAADAAEAGVDGLI-----------------------------IPDLPPEEAEELRAAAKKHGLD 144 (258)
T ss_pred EecccHHhhcCHH-HHHHHHHHcCCcEEE-----------------------------ECCCCHHHHHHHHHHHHHcCCc
Q ss_pred cccCC
Q 021767 304 IPQLL 308 (308)
Q Consensus 304 ~aqva 308 (308)
+..++
T Consensus 145 ~I~lv 149 (258)
T PRK13111 145 LIFLV 149 (258)
T ss_pred EEEEe
No 146
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=44.28 E-value=1.2e+02 Score=27.80 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=37.6
Q ss_pred hHHHHHHHhCCcEEEcccccccccC-CCCCCCCC-------CCC--------chhhhhhccccChHHH-HHHHHHHHHHh
Q 021767 238 EIKNICDSLGIRLISYSPLGLGMLT-GKYTPSKL-------PRG--------PRALLFRQILPGLKPL-LRSLKEIAERR 300 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~spl~~G~L~-~~~~~~~~-------~~~--------~~~~~~~~~~~~~~~~-~~~l~~ia~~~ 300 (308)
.+++.||++||.|.||-.++...-. +......+ +.. .....+.+..++.++. ++.+.+|+++|
T Consensus 74 ~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y 153 (311)
T PF02638_consen 74 FMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY 153 (311)
T ss_pred HHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999844322111 00100011 100 0111234455666554 45889999999
Q ss_pred CCCc
Q 021767 301 GKTI 304 (308)
Q Consensus 301 g~s~ 304 (308)
.+.-
T Consensus 154 dvDG 157 (311)
T PF02638_consen 154 DVDG 157 (311)
T ss_pred CCCe
Confidence 8653
No 147
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.96 E-value=1.7e+02 Score=25.82 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=13.1
Q ss_pred HHHHHHHHhhCCCcccEEEecCC
Q 021767 146 NACRASLARLQIEQIGIGQLHWS 168 (308)
Q Consensus 146 ~~~e~sL~~L~~d~iDl~~lH~~ 168 (308)
+.++..|+-.| +|||++=+-|-
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~G 33 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWG 33 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCc
Confidence 34555555555 57777666653
No 148
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=43.92 E-value=2.1e+02 Score=24.64 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHhh---CCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHc
Q 021767 140 TPGQFVNACRASLARL---QIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L---~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~ 216 (308)
....+.+.+++.++++ |. .+++++.... .+ .....+.++.+..+ ++..|=++..+...+...++.+...
T Consensus 13 ~~~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~---~~---~~~~~~~~~~~~~~-~vdgiIi~~~~~~~~~~~l~~~~~~ 84 (272)
T cd06300 13 WRAQMLDEFKAQAKELKKAGL-ISEFIVTSAD---GD---VAQQIADIRNLIAQ-GVDAIIINPASPTALNPVIEEACEA 84 (272)
T ss_pred HHHHHHHHHHHHHHhhhccCC-eeEEEEecCC---CC---HHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHHHHHHC
Confidence 4567788888888887 62 2466665522 11 12245777777776 6666666555544344444445555
Q ss_pred CCCcee
Q 021767 217 GVPLCS 222 (308)
Q Consensus 217 ~~~~~~ 222 (308)
++|+.+
T Consensus 85 ~iPvv~ 90 (272)
T cd06300 85 GIPVVS 90 (272)
T ss_pred CCeEEE
Confidence 665443
No 149
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=43.90 E-value=2.9e+02 Score=26.23 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=59.2
Q ss_pred ceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCC
Q 021767 89 LFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWS 168 (308)
Q Consensus 89 ~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~ 168 (308)
+-+..-.||. |+.|-++|++..+ ..+.+=++|.|-+...--.-+.+.+.+.++ +++ .+.++.+|.+
T Consensus 61 l~E~d~VfGg-------~~~L~~~i~~~~~-~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~---~~~---~~~vi~v~t~ 126 (410)
T cd01968 61 LSEKDVIFGG-------EKKLYKAILEIIE-RYHPKAVFVYSTCVVALIGDDIDAVCKTAS---EKF---GIPVIPVHSP 126 (410)
T ss_pred CCccceeecc-------HHHHHHHHHHHHH-hCCCCEEEEECCCchhhhccCHHHHHHHHH---Hhh---CCCEEEEECC
Confidence 3445557886 8888888876431 123455777777643211113333333332 233 3578889977
Q ss_pred CCCCCCh-hHHHHHHHHHHHH---------HcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 169 TANYAPP-QELALWNGLVAMY---------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 169 ~~~~~~~-~~~~~~~~l~~l~---------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
+...... ....++++|-+.. +.+.|.-||-.++. ..+.++.+.++..|+++
T Consensus 127 gf~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gl~v 187 (410)
T cd01968 127 GFVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA-GELWGVKPLLEKLGIRV 187 (410)
T ss_pred CcccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc-ccHHHHHHHHHHcCCeE
Confidence 5432211 1222344443322 14678888854443 33445555555556543
No 150
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.63 E-value=2.9e+02 Score=26.16 Aligned_cols=98 Identities=12% Similarity=0.029 Sum_probs=63.2
Q ss_pred EEEecCCCCC----CCC----hhHHHHHHHHHHHH-HcCC---ccEEEee--cCCHHHHHHHHHHHHHcC-CCceeeeec
Q 021767 162 IGQLHWSTAN----YAP----PQELALWNGLVAMY-EKGL---VRAVGVS--NYGPNQLVKIHDYLTARG-VPLCSAQVQ 226 (308)
Q Consensus 162 l~~lH~~~~~----~~~----~~~~~~~~~l~~l~-~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~-~~~~~~Q~~ 226 (308)
.+-||.++++ ..| ....++++++.+.. +.|+ |.++=+. |-+.++++++.+.++... .+..++=++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 3678887642 122 23455788877765 4464 5556454 456777888877766431 146788999
Q ss_pred cCcccCC----cch---hhHHHHHHHhCCcEEEccccccc
Q 021767 227 FSLLSMG----ENQ---LEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 227 ~~~~~~~----~~~---~~l~~~~~~~gi~v~a~spl~~G 259 (308)
||++... +.. ..+.+..+++||.+......|..
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 9997532 111 35778889999999987777653
No 151
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=43.44 E-value=91 Score=27.90 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=10.9
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEE
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQ 164 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~ 164 (308)
+.+...+.++ .|.+-|.|.+.|-+
T Consensus 22 ~~~~~~~~~~-~l~~~GaD~iEiGi 45 (259)
T PF00290_consen 22 DLETTLEILK-ALEEAGADIIEIGI 45 (259)
T ss_dssp SHHHHHHHHH-HHHHTTBSSEEEE-
T ss_pred CHHHHHHHHH-HHHHcCCCEEEECC
Confidence 5555555444 33445554444433
No 152
>PTZ00081 enolase; Provisional
Probab=43.40 E-value=2e+02 Score=27.84 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcC--CccEEEe--ecCCHHHHHHHHHHHH
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG--LVRAVGV--SNYGPNQLVKIHDYLT 214 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--Sn~~~~~l~~~~~~~~ 214 (308)
.+.+.+.+-+.+.++.+ +++++-.|- +.+ -|+.+.+|.+.= .+.-+|= +..+++.+.++++.
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl----~~~---D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~-- 346 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPF----DQD---DWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEK-- 346 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCC----Ccc---cHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHh--
Confidence 35566655555555554 467777442 112 256666776654 5655553 34568888877664
Q ss_pred HcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 215 ARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 215 ~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
-..+++|+..|-+-.=.+-.++...|+++|+.++.
T Consensus 347 ---~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 347 ---KACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred ---CCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 24677777766542112234789999999999875
No 153
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=42.30 E-value=1.5e+02 Score=25.80 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHH
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACR 149 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e 149 (308)
+++++..++.+.+++.|..|+=|+.-|+. .|.+-+.+....+.. +.++-|--=.|.. +.+...+-++
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~---~gat~~~v~~m~~~~------~~~~~IKasGGIr----t~~~a~~~i~ 199 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFST---GGATVEDVKLMRETV------GPRVGVKASGGIR----TLEDALAMIE 199 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCC---CCCCHHHHHHHHHHh------CCCceEEeeCCcC----CHHHHHHHHH
Confidence 46688899999999999999999999864 266666665554442 2333222222222 6666666666
Q ss_pred HHHHhhCCC
Q 021767 150 ASLARLQIE 158 (308)
Q Consensus 150 ~sL~~L~~d 158 (308)
.--.|+||.
T Consensus 200 aGA~riGtS 208 (221)
T PRK00507 200 AGATRLGTS 208 (221)
T ss_pred cCcceEccC
Confidence 555555554
No 154
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=42.19 E-value=57 Score=27.05 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHcC-CccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 176 QELALWNGLVAMYEKG-LVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 176 ~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
...+++++|.++++.+ +|..+|..|... .+..+.+.. ...+.+..|+-. .+-...+..+++.|+.++.
T Consensus 62 s~~Dil~al~~a~~~~~~Iavv~~~~~~~-~~~~~~~ll-----~~~i~~~~~~~~---~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 62 SGFDILRALAKAKKYGPKIAVVGYPNIIP-GLESIEELL-----GVDIKIYPYDSE---EEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp -HHHHHHHHHHCCCCTSEEEEEEESS-SC-CHHHHHHHH-----T-EEEEEEESSH---HHHHHHHHHHHHTT--EEE
T ss_pred CHhHHHHHHHHHHhcCCcEEEEecccccH-HHHHHHHHh-----CCceEEEEECCH---HHHHHHHHHHHHcCCcEEE
Confidence 3456788888888666 344444444432 133333331 235555555431 2223678888899999886
No 155
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=42.13 E-value=1.4e+02 Score=28.99 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEEEecCCCCCCC---ChhHHHHHHHHHHHHHc-CCccE---------EEeecCCHHHHHHHHH
Q 021767 145 VNACRASLARLQIEQIGIGQLHWSTANYA---PPQELALWNGLVAMYEK-GLVRA---------VGVSNYGPNQLVKIHD 211 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~iDl~~lH~~~~~~~---~~~~~~~~~~l~~l~~~-G~ir~---------iGvSn~~~~~l~~~~~ 211 (308)
+..+-+.|.++|++.|++ |....+. ..-.++-|+.++.+++. ..++. +|.+++..+-+++.++
T Consensus 28 kl~ia~~Ld~~Gv~~IE~----~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~ 103 (448)
T PRK12331 28 MLPILEKLDNAGYHSLEM----WGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQ 103 (448)
T ss_pred HHHHHHHHHHcCCCEEEe----cCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHH
Q ss_pred HHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEc
Q 021767 212 YLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 212 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (308)
.+...| ++++.+-..+-+..... ..+++++++|+.+.+.
T Consensus 104 ~A~~~G--vd~irif~~lnd~~n~~-~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 104 KSVENG--IDIIRIFDALNDVRNLE-TAVKATKKAGGHAQVA 142 (448)
T ss_pred HHHHCC--CCEEEEEEecCcHHHHH-HHHHHHHHcCCeEEEE
No 156
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=42.08 E-value=3.2e+02 Score=26.19 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+.++..+.++..++.|++.|=.--.-.. . .....=+++++. -.+++.|.--... .++.+...+-+
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~----~-~d~~~v~avRe~-----vG~~~~L~vDaN~---~w~~~~A~~~~-- 260 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADL----E-DDIRRCRLAREV-----IGPDNKLMIDANQ---RWDVPEAIEWV-- 260 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCH----H-HHHHHHHHHHHh-----cCCCCeEEEECCC---CCCHHHHHHHH--
Confidence 3455667777778899998754211011 0 111222344442 2234444444421 23555433333
Q ss_pred HHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcC----CccEEEeecCCHHHHHHHHHHHHHcCCCceeeeec
Q 021767 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG----LVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQ 226 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G----~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~ 226 (308)
++|. -+++.++..|- +.+ -++.+.+|++.- .=-..|=|-++...+.++++. ...+++|+.
T Consensus 261 --~~L~--~~~l~~iEEP~----~~~---d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d 324 (415)
T cd03324 261 --KQLA--EFKPWWIEEPT----SPD---DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQID 324 (415)
T ss_pred --HHhh--ccCCCEEECCC----CCC---cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeC
Confidence 3332 24566666442 111 256677777764 222345566788877777653 347888887
Q ss_pred cCcccCCcchhhHHHHHHHhCCcEEEcc
Q 021767 227 FSLLSMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
..-.---.+-..+.+.|+.+|+.+....
T Consensus 325 ~~~~GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 325 SCRLGGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred ccccCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 6653211122478999999999987753
No 157
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=42.08 E-value=1.9e+02 Score=27.08 Aligned_cols=122 Identities=12% Similarity=0.102 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCceeCCcCCCCCC-----CCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 76 QQTFNLAVENGINLFDTADSYGTGR-----LNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 76 ~~~l~~A~e~Gi~~~DtA~~Yg~~~-----~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
.+.++...+.|+|.+-..---.+.. .-+.+-..+-++++...+.+. +.+-+--=.|.+ .-+.+.+++.++.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~--~~v~~Dli~GlP--gqt~~~~~~~l~~ 178 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGF--SNLSIDLIYGLP--TQSLSDFIVDLHQ 178 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CeEEEEeecCCC--CCCHHHHHHHHHH
Confidence 3557777788999886554333310 002222233344433211011 112221112222 3388899999988
Q ss_pred HHHhhCCCcccEEEecC-CCCC---------C-CChhH--HH-HHHHHHHHHHcCCccEEEeecCCH
Q 021767 151 SLARLQIEQIGIGQLHW-STAN---------Y-APPQE--LA-LWNGLVAMYEKGLVRAVGVSNYGP 203 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~-~~~~---------~-~~~~~--~~-~~~~l~~l~~~G~ir~iGvSn~~~ 203 (308)
.++ |+.++|.+|.+.- |... . .|.++ .+ ...+.+.|.+.|.. .+++|||..
T Consensus 179 ~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 243 (370)
T PRK06294 179 AIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT-RYELASYAK 243 (370)
T ss_pred HHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC-eeeeeeeeC
Confidence 775 8999999998863 2100 0 01111 11 22355667778874 488998864
No 158
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=41.52 E-value=2.8e+02 Score=25.28 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH--cCCc-cEEEeecCCHHHHHHHHHHHHH
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLV-RAVGVSNYGPNQLVKIHDYLTA 215 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~--~G~i-r~iGvSn~~~~~l~~~~~~~~~ 215 (308)
.+.+.+++-++..++ -| +|=+++-.-..+...+..++-.+.++..++ .|++ --.|++..+.....++.+.+++
T Consensus 22 vD~~a~~~lv~~li~-~G---v~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 22 VDEEALRRLVEFLIA-AG---VDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred cCHHHHHHHHHHHHH-cC---CCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHh
Confidence 566666666655443 23 565555433333333344444555666555 3555 3468888887777777788888
Q ss_pred cCCC-ceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcc-ccccc
Q 021767 216 RGVP-LCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS-PLGLG 259 (308)
Q Consensus 216 ~~~~-~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~s-pl~~G 259 (308)
.|.. +.++-..|+-..+...-...-..|..-++.++.|. |...|
T Consensus 98 ~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg 143 (299)
T COG0329 98 LGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTG 143 (299)
T ss_pred cCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 8864 55555555554322211244555666799999988 55544
No 159
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.36 E-value=1.6e+02 Score=30.25 Aligned_cols=71 Identities=6% Similarity=-0.036 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc--CCccEEEeecCCHHHHHHHHHHHH
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GLVRAVGVSNYGPNQLVKIHDYLT 214 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~ 214 (308)
.+.+.+++-++.....-.....-+|+|+..+. +. ...+++|-+..++ +.+++|.++|.....+.-+...|.
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~----Ls-~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHM----LT-NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHh----cC-HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence 35677777666655443344567888885431 22 2356777777777 889999999976666666666554
No 160
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=41.33 E-value=2.2e+02 Score=24.08 Aligned_cols=150 Identities=12% Similarity=0.075 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+.+.+.++++.+++.|+...|.- +..+..+++... ..+.++++++.-=. +..+.++..+..
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~------------~~~l~p~m~~vG-~~w~~~~i~va~e~------~as~~~~~~l~~ 69 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII------------EEGLAPGMDIVG-DKYEEGEIFVPELL------MAADAMKAGLDL 69 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH------------HHHHHHHHHHHH-HHHccCCeeHHHHH------HHHHHHHHHHHH
Confidence 56788999999999997755432 222223322210 00233444443211 122333444444
Q ss_pred HHHhhCCCc---ccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC-ccEEEeecCCHHHHHHHHHHHHHcCCCceeeeec
Q 021767 151 SLARLQIEQ---IGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQ 226 (308)
Q Consensus 151 sL~~L~~d~---iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~ 226 (308)
....+.... ---+++-.+..+... .+..-.-.-|+..|. +.++| .+-+.+.+.+.... ..|+++-+.
T Consensus 70 l~~~~~~~~~~~~~~vl~~~~~gd~H~---lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~-----~~~d~v~lS 140 (201)
T cd02070 70 LKPLLGKSKSAKKGKVVIGTVEGDIHD---IGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKE-----HKPDILGLS 140 (201)
T ss_pred HHHHHhhcCCCCCCeEEEEecCCccch---HHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHH-----cCCCEEEEe
Confidence 333333221 112344433222211 122222334666776 56667 45566666655443 456777666
Q ss_pred cCcccCCcchhhHHHHHHHhCC
Q 021767 227 FSLLSMGENQLEIKNICDSLGI 248 (308)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~gi 248 (308)
++.-..-..-.++++.+++.+.
T Consensus 141 ~~~~~~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 141 ALMTTTMGGMKEVIEALKEAGL 162 (201)
T ss_pred ccccccHHHHHHHHHHHHHCCC
Confidence 6544332333467777777754
No 161
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=41.19 E-value=2.9e+02 Score=25.44 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=37.8
Q ss_pred CCCEEEEeccCCCC---CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCC---CCCChhHHHHHHHHHHHHHcCCccEE
Q 021767 123 QNNIVIATKFAAYP---WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTA---NYAPPQELALWNGLVAMYEKGLVRAV 196 (308)
Q Consensus 123 R~~v~i~tK~~~~~---~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~---~~~~~~~~~~~~~l~~l~~~G~ir~i 196 (308)
.+++.|..|+.... ...+.+... .+-+.|+..|+|+++ +|.... ...+......++.++++++.=.|--+
T Consensus 219 G~d~~v~vri~~~~~~~~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi 294 (336)
T cd02932 219 PEDKPLFVRISATDWVEGGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVI 294 (336)
T ss_pred CCCceEEEEEcccccCCCCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCCCCEE
Confidence 34667777875421 122333332 233345566665554 331100 00011011123455555655555555
Q ss_pred EeecC-CHHHHHHHHH
Q 021767 197 GVSNY-GPNQLVKIHD 211 (308)
Q Consensus 197 GvSn~-~~~~l~~~~~ 211 (308)
+.-++ ++++.+++++
T Consensus 295 ~~G~i~t~~~a~~~l~ 310 (336)
T cd02932 295 AVGLITDPEQAEAILE 310 (336)
T ss_pred EeCCCCCHHHHHHHHH
Confidence 55554 4555555544
No 162
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=41.07 E-value=3.4e+02 Score=26.23 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEec
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLH 166 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH 166 (308)
+.+.+++.++..++ |+.++|++|.+.
T Consensus 228 T~e~~~~~l~~~~~-l~~~~is~y~L~ 253 (449)
T PRK09058 228 TPEIWQQDLAIVRD-LGLDGVDLYALN 253 (449)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEeccc
Confidence 78888888887765 899999999886
No 163
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=40.63 E-value=3.1e+02 Score=25.56 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=14.1
Q ss_pred hhHHHHHHHhCCcEEE
Q 021767 237 LEIKNICDSLGIRLIS 252 (308)
Q Consensus 237 ~~l~~~~~~~gi~v~a 252 (308)
.++++++++++|.+-.
T Consensus 236 p~ll~~l~~~~I~lEv 251 (345)
T cd01321 236 PLLMDLVKKKNIAIEV 251 (345)
T ss_pred HHHHHHHHHcCCeEEE
Confidence 4899999999999865
No 164
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=40.23 E-value=1.7e+02 Score=29.74 Aligned_cols=76 Identities=18% Similarity=0.090 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEee-cCCHHHHHHHHHHHHHcCC
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS-NYGPNQLVKIHDYLTARGV 218 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~ 218 (308)
+.+.++.+. .+|.|++=+++..... .+ ++.+.+.+.+.+....-.++.|||. |-+++.+.++.+. .
T Consensus 12 ~~eda~~a~-----~~gaD~iGfIf~~~Sp-R~--V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-----~ 78 (610)
T PRK13803 12 DSALISKAV-----DMLPDFIGFIFYEKSP-RF--VGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-----N 78 (610)
T ss_pred cHHHHHHHH-----HcCCCEEEEEecCCCC-CC--CCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-----c
Confidence 455555543 4899999987655321 21 2222212333333323357889985 7778888777654 5
Q ss_pred CceeeeeccC
Q 021767 219 PLCSAQVQFS 228 (308)
Q Consensus 219 ~~~~~Q~~~~ 228 (308)
.++++|++-+
T Consensus 79 ~ld~vQLHG~ 88 (610)
T PRK13803 79 GIDFVQLHGA 88 (610)
T ss_pred CCCEEEECCC
Confidence 6899999764
No 165
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=40.21 E-value=1.8e+02 Score=28.97 Aligned_cols=120 Identities=19% Similarity=0.132 Sum_probs=68.9
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
+++.+.+++.+++..+ +=+|.+-||.- + ..+.++.++ + |-.||.+-....+..+.-. ++
T Consensus 291 ~lt~e~~~d~ieeQAe----qGVDf~TIHaG------v----~~~~v~~~~--~--R~tgIVSRGGSima~Wml~---h~ 349 (607)
T PRK09284 291 DLTWEIFRDTLIEQAE----QGVDYFTIHAG------V----LLRYVPLTA--K--RVTGIVSRGGSIMAKWCLA---HH 349 (607)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChh------h----HHHHHHHHh--C--cccCcccCCHHHHHHHHHH---cC
Confidence 4577777777777665 34678999942 1 244555554 3 7788888887766655322 11
Q ss_pred CCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHH
Q 021767 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIA 297 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia 297 (308)
.=|++...+ +++++.|++++|.+- ||-|+=-|.+. +.+++.+ |. -...+-+|.+.|
T Consensus 350 --------kENplYe~F--D~ileI~k~YDVtlS----LGDGLRPG~ia----DA~D~AQ-~~-----EL~tLGELt~rA 405 (607)
T PRK09284 350 --------KENFLYTHF--EEICEIMAAYDVSFS----LGDGLRPGSIA----DANDEAQ-FA-----ELETLGELTKIA 405 (607)
T ss_pred --------CcCcHHHHH--HHHHHHHHHhCeeee----ccCCcCCCccc----cCCcHHH-HH-----HHHHHHHHHHHH
Confidence 123333222 289999999999984 55554222211 1111111 11 123355777888
Q ss_pred HHhCC
Q 021767 298 ERRGK 302 (308)
Q Consensus 298 ~~~g~ 302 (308)
.++|+
T Consensus 406 ~e~gV 410 (607)
T PRK09284 406 WEHDV 410 (607)
T ss_pred HHcCC
Confidence 88876
No 166
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=40.15 E-value=2.3e+02 Score=23.99 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=89.4
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHH
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACR 149 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e 149 (308)
.+.++..++++.+.+.|+.-+=+.+.+- + ...+.++. ..+.+.+=++.+......+....+++
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~v--------~-~~~~~l~~--------~~~~v~~~~~fp~g~~~~~~k~~eve 76 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCFV--------P-LAREALKG--------SGVKVCTVIGFPLGATTTEVKVAEAR 76 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHHH--------H-HHHHHcCC--------CCcEEEEEEecCCCCCcHHHHHHHHH
Confidence 3568899999999997766554443222 1 22233322 34666666544333345666777788
Q ss_pred HHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc--CCc-cE-EEeecCCHHHHHHHHHHHHHcCCCceeeee
Q 021767 150 ASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GLV-RA-VGVSNYGPNQLVKIHDYLTARGVPLCSAQV 225 (308)
Q Consensus 150 ~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~--G~i-r~-iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 225 (308)
+.++ +|.|-+|+++--.. . ..-....+++.+.+++++ |+. +- +...-.+.+++..+.+.+.+.| .+++..
T Consensus 77 ~A~~-~GAdevdvv~~~g~--~-~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~G--aD~IKT 150 (203)
T cd00959 77 EAIA-DGADEIDMVINIGA--L-KSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAG--ADFIKT 150 (203)
T ss_pred HHHH-cCCCEEEEeecHHH--H-hCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC--CCEEEc
Confidence 8887 79999997654321 0 011223466777777775 432 21 2344445778888888777666 456666
Q ss_pred c--cCcccCCcchhhHH-HHHHHhCCcEEE
Q 021767 226 Q--FSLLSMGENQLEIK-NICDSLGIRLIS 252 (308)
Q Consensus 226 ~--~~~~~~~~~~~~l~-~~~~~~gi~v~a 252 (308)
. |.+..-..+.-.++ +.++ ..+++.+
T Consensus 151 sTG~~~~~at~~~v~~~~~~~~-~~v~ik~ 179 (203)
T cd00959 151 STGFGPGGATVEDVKLMKEAVG-GRVGVKA 179 (203)
T ss_pred CCCCCCCCCCHHHHHHHHHHhC-CCceEEE
Confidence 6 65433333322233 3333 4466554
No 167
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=40.06 E-value=3.6e+02 Score=26.15 Aligned_cols=111 Identities=19% Similarity=0.175 Sum_probs=64.7
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChh-HHHHHHHHHHHHHcC-CccEEEeecCC---HHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQ-ELALWNGLVAMYEKG-LVRAVGVSNYG---PNQLVKIHDY 212 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~-~~~~~~~l~~l~~~G-~ir~iGvSn~~---~~~l~~~~~~ 212 (308)
.++++.+.+.+++....+ ..++.+.+-.+.+ |+. .+.+++.|..++++. -+ .+.+++-. ++.++++.+.
T Consensus 59 ~Ltpee~~~~i~~v~~~~--~~~~~V~iaG~GE---PLl~~e~~~~~l~~~~~~~~~i-~i~lsTNG~~l~e~i~~L~~~ 132 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEI--PQLSVVGIAGPGD---PLANIGKTFQTLELVARQLPDV-KLCLSTNGLMLPEHVDRLVDL 132 (442)
T ss_pred cCCHHHHHHHHHHHHHhc--CCCCEEEEecCCC---cccCccccHHHHHHHHHhcCCC-eEEEECCCCCCHHHHHHHHHC
Confidence 357888888888777665 2345566665532 221 123678888888882 23 57777654 4555554432
Q ss_pred HHHcCCCceeeeeccCcccCCcch--------------------------hhHHHHHHHhCCcEEEcccccccc
Q 021767 213 LTARGVPLCSAQVQFSLLSMGENQ--------------------------LEIKNICDSLGIRLISYSPLGLGM 260 (308)
Q Consensus 213 ~~~~~~~~~~~Q~~~~~~~~~~~~--------------------------~~l~~~~~~~gi~v~a~spl~~G~ 260 (308)
.++.+.+.++-++..... .+-++.+.+.|+.+....++-.|+
T Consensus 133 ------gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 133 ------GVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred ------CCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 245566666654421110 123566778888887777776553
No 168
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=39.45 E-value=2.5e+02 Score=24.19 Aligned_cols=131 Identities=19% Similarity=0.137 Sum_probs=72.6
Q ss_pred HHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEee-cCCHHHHHHHHHHHHHcCCCceeee
Q 021767 146 NACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS-NYGPNQLVKIHDYLTARGVPLCSAQ 224 (308)
Q Consensus 146 ~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q 224 (308)
+.++..-+.||+.. ..+.-+. ..+...+.+..++.+++++| +..|-.- +.+..+.......|...++++
T Consensus 46 ~~~~~~A~~lgip~---~~i~~~~--~~~~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~v~~~~gl~~---- 115 (218)
T TIGR03679 46 ELTRLQAEALGIPL---VKIETSG--EKEKEVEDLKGALKELKREG-VEGIVTGAIASRYQKSRIERICEELGLKV---- 115 (218)
T ss_pred HHHHHHHHHhCCCE---EEEECCC--CChHHHHHHHHHHHHHHHcC-CCEEEECCcccHhHHHHHHHHHHhCCCeE----
Confidence 34455557788753 3333221 12233445778899998885 6654332 334444445545565554432
Q ss_pred eccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 225 VQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
+.|+-. ..+.++++.+.+.|+..+.-+.-+.| |...+-+. .-..+.++.|.++.++||+.|
T Consensus 116 --~~PLw~-~~~~el~~~~~~~G~~~~i~~v~~~~-l~~~~lG~---------------~~~~~~~~~l~~l~~~~~~~~ 176 (218)
T TIGR03679 116 --FAPLWG-RDQEEYLRELVERGFRFIIVSVSAYG-LDESWLGR---------------EIDEKYIEKLKALNKRYGINP 176 (218)
T ss_pred --Eeehhc-CCHHHHHHHHHHCCCEEEEEEEecCC-CChHHCCC---------------ccCHHHHHHHHHHHhhcCccc
Confidence 223322 23348999999999998665554544 32222111 111344578888888888876
Q ss_pred c
Q 021767 305 P 305 (308)
Q Consensus 305 a 305 (308)
.
T Consensus 177 ~ 177 (218)
T TIGR03679 177 A 177 (218)
T ss_pred c
Confidence 3
No 169
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=39.37 E-value=1.2e+02 Score=30.59 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=50.5
Q ss_pred HHHHHHhhCCCcccEEEecCCCCCCCC---hhHHHHHHHHHHHHHcCC-cc---------EEEeecCCHHHHHHHHHHHH
Q 021767 148 CRASLARLQIEQIGIGQLHWSTANYAP---PQELALWNGLVAMYEKGL-VR---------AVGVSNYGPNQLVKIHDYLT 214 (308)
Q Consensus 148 ~e~sL~~L~~d~iDl~~lH~~~~~~~~---~~~~~~~~~l~~l~~~G~-ir---------~iGvSn~~~~~l~~~~~~~~ 214 (308)
+-..|.+.|++.|+++ ....+.- .-.++-|+.|.++++... ++ .+|.++|..+-++...+.+.
T Consensus 31 ia~~l~~~G~~~iE~~----ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~ 106 (592)
T PRK09282 31 IAEKLDKVGFWSLEVW----GGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAA 106 (592)
T ss_pred HHHHHHHcCCCEEEec----CCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHH
Confidence 4445777788888873 1100000 001235777777776632 22 24555666666666666665
Q ss_pred HcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEE
Q 021767 215 ARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 215 ~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
..|+ +++.+-..+-+.. .-...+++++++|..+.
T Consensus 107 ~~Gv--d~irif~~lnd~~-n~~~~i~~ak~~G~~v~ 140 (592)
T PRK09282 107 ENGI--DIFRIFDALNDVR-NMEVAIKAAKKAGAHVQ 140 (592)
T ss_pred HCCC--CEEEEEEecChHH-HHHHHHHHHHHcCCEEE
Confidence 5554 3343333332211 11255777788887665
No 170
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=38.98 E-value=3.2e+02 Score=25.37 Aligned_cols=88 Identities=13% Similarity=0.134 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC-ccEEEeecC------CHHHHHHHHHH
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNY------GPNQLVKIHDY 212 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~------~~~~l~~~~~~ 212 (308)
.++.|+.+++...+ .|-=-.+++..-+....|-....+.+-+++|+++|. |-.||+-+| +.+.....+..
T Consensus 169 gpd~I~~aF~~Are---adP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~ 245 (345)
T COG3693 169 GPDYIKLAFHIARE---ADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLK 245 (345)
T ss_pred ccHHHHHHHHHHHh---hCCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHH
Confidence 67888888887776 222223444422122233334467889999999999 999998765 34444444333
Q ss_pred HHHcCCCceeeeeccCcc
Q 021767 213 LTARGVPLCSAQVQFSLL 230 (308)
Q Consensus 213 ~~~~~~~~~~~Q~~~~~~ 230 (308)
-...|.++.|-.+..+..
T Consensus 246 ~~k~Gl~i~VTELD~~~~ 263 (345)
T COG3693 246 FSKLGLPIYVTELDMSDY 263 (345)
T ss_pred HhhcCCCceEEEeeeecc
Confidence 333478888877766653
No 171
>PLN02444 HMP-P synthase
Probab=38.90 E-value=1.9e+02 Score=28.92 Aligned_cols=87 Identities=18% Similarity=0.131 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCC
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGV 218 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~ 218 (308)
.+.+.+.+.+++..+ +=+|.+-||.- + ..+.++.++ + |-.||.+-....+..+.-. ++
T Consensus 297 lt~d~~~d~ieeQae----qGVDfmTIH~G------v----~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~---~~- 354 (642)
T PLN02444 297 LTWEVFRETLIEQAE----QGVDYFTIHAG------V----LLRYIPLTA--K--RMTGIVSRGGSIHAKWCLA---YH- 354 (642)
T ss_pred CCHHHHHHHHHHHHH----hCCCEEEEChh------h----HHHHHHHHh--C--cccCceeCCcHHHHHHHHH---cC-
Confidence 455566666655554 34677888842 1 234455554 3 6678777776655544321 11
Q ss_pred CceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccc
Q 021767 219 PLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGM 260 (308)
Q Consensus 219 ~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 260 (308)
.=|++...+ +++++.|++++|.+- ||-|+
T Consensus 355 -------kENPlYe~F--D~ileI~k~YDVtlS----LGDGL 383 (642)
T PLN02444 355 -------KENFAYEHW--DDILDICNQYDIALS----IGDGL 383 (642)
T ss_pred -------CcCchHHHH--HHHHHHHHHhCeeee----ccCCc
Confidence 123333222 289999999999984 55554
No 172
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=38.76 E-value=1.8e+02 Score=25.46 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCCceeeee--ccCcccCCc--chhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhh
Q 021767 203 PNQLVKIHDYLTARGVPLCSAQV--QFSLLSMGE--NQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALL 278 (308)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~Q~--~~~~~~~~~--~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~ 278 (308)
+.+++.+ +.+.|+.+..+.- +||.++... +..++.+|++.-|-.-+.+-|+.-|-
T Consensus 51 ~a~vka~---Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s------------------ 109 (272)
T COG4130 51 AAEVKAL---AEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGS------------------ 109 (272)
T ss_pred HHHHHHH---HHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCC------------------
Confidence 4555544 4456655433322 445444221 22478999999999999999998652
Q ss_pred hhc---cccChHHHHHHHHHHHHHhCCC
Q 021767 279 FRQ---ILPGLKPLLRSLKEIAERRGKT 303 (308)
Q Consensus 279 ~~~---~~~~~~~~~~~l~~ia~~~g~s 303 (308)
++. ........+++|+.|-++||++
T Consensus 110 ~~~~~vr~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 110 WPGTAVRREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred CCCcccchHHHHHHHHHhhHHHHHhCcc
Confidence 121 2345677889999999999986
No 173
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=38.56 E-value=76 Score=28.15 Aligned_cols=102 Identities=12% Similarity=0.185 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHH-HHHHHcCCccEEEeecC----CHHHHHHHHHHHHHcCCC
Q 021767 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGL-VAMYEKGLVRAVGVSNY----GPNQLVKIHDYLTARGVP 219 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l-~~l~~~G~ir~iGvSn~----~~~~l~~~~~~~~~~~~~ 219 (308)
...++..|+-.+ +|||++=+-|-.....|. ++++.. +-+++-|.--+.|=+-| ....++++++.|+..|
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~---~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lG-- 97 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPE---EILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELG-- 97 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTC---HHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT--
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCH---HHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcC--
Confidence 355777777777 899999998753322222 233333 33333333333331111 1233455666666555
Q ss_pred ceeeeeccCcccCCcc-hhhHHHHHHHhCCcEEE
Q 021767 220 LCSAQVQFSLLSMGEN-QLEIKNICDSLGIRLIS 252 (308)
Q Consensus 220 ~~~~Q~~~~~~~~~~~-~~~l~~~~~~~gi~v~a 252 (308)
++++.+.-.-++-... ...+++.++++|..++.
T Consensus 98 f~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 98 FDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp -SEEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred CCEEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 3444433332222221 23566666666666553
No 174
>PLN02389 biotin synthase
Probab=38.42 E-value=3.5e+02 Score=25.61 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=67.6
Q ss_pred CCcHHHHHHHHHHHHHcCCCceeCCcC-CCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHH
Q 021767 69 ESMDSQLQQTFNLAVENGINLFDTADS-YGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNA 147 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~DtA~~-Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~ 147 (308)
..+.++..+.++.+.+.|++.|-.... .+.... -..-+.+-+.++.. +...+.|+...|. .+.+
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e-~~~~e~i~eiir~i-----k~~~l~i~~s~G~----l~~E----- 179 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGR-KTNFNQILEYVKEI-----RGMGMEVCCTLGM----LEKE----- 179 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCC-hhHHHHHHHHHHHH-----hcCCcEEEECCCC----CCHH-----
Confidence 468889999999999999998753211 111000 01123455666653 2223445544432 2322
Q ss_pred HHHHHHhhCCCcccEEEecCCC----CCCCChhHHHHHHHHHHHHHcCCccE----EEeecCCHHHHHHHHHHHHHc
Q 021767 148 CRASLARLQIEQIGIGQLHWST----ANYAPPQELALWNGLVAMYEKGLVRA----VGVSNYGPNQLVKIHDYLTAR 216 (308)
Q Consensus 148 ~e~sL~~L~~d~iDl~~lH~~~----~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~~~~~ 216 (308)
.-+.|+..|+|.+-.- +...+ .-..+...++.++.++.+++.|.=-. +|+ +-+.+++.+.+..++..
T Consensus 180 ~l~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt~edrv~~l~~Lr~L 254 (379)
T PLN02389 180 QAAQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL-GEAEEDRVGLLHTLATL 254 (379)
T ss_pred HHHHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC-CCCHHHHHHHHHHHHhc
Confidence 3334455577664331 12100 00112355668899999999995211 244 44555555555555443
No 175
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=38.41 E-value=1.8e+02 Score=27.95 Aligned_cols=72 Identities=7% Similarity=-0.075 Sum_probs=47.7
Q ss_pred HHHHHHHHHHc------CCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEc
Q 021767 180 LWNGLVAMYEK------GLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 180 ~~~~l~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (308)
-++.+.+|++. ..=-..+=|.++.+++.++++. --.+++|+..+-+---.+-.++.++|+.+||.++..
T Consensus 280 ~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g 354 (408)
T TIGR01502 280 QIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVG 354 (408)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 36677777665 3333345667788888887664 347888887765422122347899999999999875
Q ss_pred ccc
Q 021767 254 SPL 256 (308)
Q Consensus 254 spl 256 (308)
+..
T Consensus 355 ~~~ 357 (408)
T TIGR01502 355 GTC 357 (408)
T ss_pred CCC
Confidence 544
No 176
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=38.39 E-value=95 Score=27.78 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=42.2
Q ss_pred ccEEEeecCC---HHHHHHHHHHHHH----cCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCCC
Q 021767 193 VRAVGVSNYG---PNQLVKIHDYLTA----RGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKY 265 (308)
Q Consensus 193 ir~iGvSn~~---~~~l~~~~~~~~~----~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~ 265 (308)
+-|.|+|+.. +++|+++....+. .+.++.=+=+.++|- |+.. ..+.+|+++-.=.++. |||.+
T Consensus 143 LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe-RD~~-~~~~eY~~eF~pkllG--------LTGT~ 212 (280)
T KOG2792|consen 143 LIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE-RDSV-EVVAEYVSEFHPKLLG--------LTGTT 212 (280)
T ss_pred EEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc-cCCH-HHHHHHHHhcChhhhc--------ccCCH
Confidence 5677877653 6777777665442 122221122233332 1122 2678888876655543 66652
Q ss_pred CCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCC
Q 021767 266 TPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGK 302 (308)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 302 (308)
+.++++|++|.+
T Consensus 213 -------------------------eqvk~vak~yRV 224 (280)
T KOG2792|consen 213 -------------------------EQVKQVAKKYRV 224 (280)
T ss_pred -------------------------HHHHHHHHHhEE
Confidence 688888888854
No 177
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=38.20 E-value=91 Score=28.16 Aligned_cols=57 Identities=7% Similarity=0.056 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccCc---------cc--CCcchhhHHHHHHHhCCcEEEcccccc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFSL---------LS--MGENQLEIKNICDSLGIRLISYSPLGL 258 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~~---------~~--~~~~~~~l~~~~~~~gi~v~a~spl~~ 258 (308)
+.+...+.++.|.+.|++...+--.+.- .. ....-.+|++|++++||+|+.|.--..
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~ 97 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET 97 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc
Confidence 5666777777777777654444222210 00 011224788899999988876655443
No 178
>PRK05660 HemN family oxidoreductase; Provisional
Probab=38.18 E-value=2.9e+02 Score=25.99 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+.+++.+.++.+.+.|+..+..--+||- ...+.+.+++.++.
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Gl--------------------------------------pgqt~~~~~~~l~~ 182 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGL--------------------------------------PDQSLEEALDDLRQ 182 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC--------------------------------------CCCCHHHHHHHHHH
Q ss_pred HHHhhCCCcccEEEe---------cCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCC
Q 021767 151 SLARLQIEQIGIGQL---------HWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYG 202 (308)
Q Consensus 151 sL~~L~~d~iDl~~l---------H~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 202 (308)
.++ |+.|+|.+|.+ +......++.+..+.++...+..++.--..+++|||.
T Consensus 183 ~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa 242 (378)
T PRK05660 183 AIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYA 242 (378)
T ss_pred HHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeeccccc
No 179
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=38.04 E-value=98 Score=28.06 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHH
Q 021767 144 FVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKI 209 (308)
Q Consensus 144 i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 209 (308)
.++.+.-.+.-++ ..++++|..|....+|....++|+.|.++.++|. +.|=+|+|..+.++.+
T Consensus 141 ~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~ 203 (293)
T COG1131 141 MKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEEL 203 (293)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHh
Confidence 3444444444443 4699999999877788877889999999999997 5688999998887765
No 180
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=37.87 E-value=2.5e+02 Score=23.68 Aligned_cols=117 Identities=14% Similarity=0.209 Sum_probs=67.6
Q ss_pred CCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCH
Q 021767 124 NNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGP 203 (308)
Q Consensus 124 ~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 203 (308)
....+.-.+... .+..+.+...+...++..+...-.+++-- ++.. .......+.+.++.+++.|. .+++.+|+.
T Consensus 82 ~~~~l~ini~~~--~l~~~~~~~~~~~~l~~~~~~~~~l~iei-~e~~-~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~ 155 (240)
T cd01948 82 PDLRLSVNLSAR--QLRDPDFLDRLLELLAETGLPPRRLVLEI-TESA-LIDDLEEALATLRRLRALGV--RIALDDFGT 155 (240)
T ss_pred CCeEEEEECCHH--HhCCcHHHHHHHHHHHHcCCCHHHEEEEE-ecch-hhCCHHHHHHHHHHHHHCCC--eEEEeCCCC
Confidence 344455554221 12334456777788888877642333222 2111 11122347889999999997 688888764
Q ss_pred H--HHHHHHHHHHHcCCCceeeeeccCcccCCcc-------hhhHHHHHHHhCCcEEE
Q 021767 204 N--QLVKIHDYLTARGVPLCSAQVQFSLLSMGEN-------QLEIKNICDSLGIRLIS 252 (308)
Q Consensus 204 ~--~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~-------~~~l~~~~~~~gi~v~a 252 (308)
. .+..+.. ++|+.+-+..+.+..-.. -..++..|+..|+.+++
T Consensus 156 ~~~~~~~l~~------~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 207 (240)
T cd01948 156 GYSSLSYLKR------LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVA 207 (240)
T ss_pred cHhhHHHHHh------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEE
Confidence 3 3333322 467777766555433111 13689999999999987
No 181
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=37.81 E-value=3e+02 Score=25.12 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGM 260 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 260 (308)
++.+|.++.+.++..+++..+.+..++. ..+-..+++.|+.++...||+.+.
T Consensus 237 s~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~~la~e~g~~v~~ldpl~~~~ 288 (311)
T PRK09545 237 GAQRLHEIRTQLVEQKATCVFAEPQFRP-------AVIESVAKGTSVRMGTLDPLGTNI 288 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCh-------HHHHHHHHhcCCeEEEeccccccc
Confidence 5788999999888888887776665543 144556778899888778887653
No 182
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=37.59 E-value=1.5e+02 Score=27.51 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHH
Q 021767 73 SQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASL 152 (308)
Q Consensus 73 ~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL 152 (308)
++..+.+..+.+.|++.|=.-- +. ..-.+.+ +++++. .. ++-|.--... .++.+..+ + +
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~----~~d~~~l-~~vr~~----~g--~~~l~lDaN~---~~~~~~a~--~---~ 197 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KP----GWDVEPL-KAVRER----FP--DIPLMADANS---AYTLADIP--L---L 197 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--Ch----HHHHHHH-HHHHHH----CC--CCeEEEECCC---CCCHHHHH--H---H
Confidence 5566667777788888763321 21 1112222 444442 12 3334333321 22444432 1 3
Q ss_pred HhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCc-cEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCccc
Q 021767 153 ARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV-RAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLS 231 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~ 231 (308)
++| +..++.++..| +... -+..+.++++.-.+ =..|=|-++...+..+++. -.++++|+....+-
T Consensus 198 ~~l--~~~~i~~iEeP------~~~~-d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~G 263 (354)
T cd03317 198 KRL--DEYGLLMIEQP------LAAD-DLIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVG 263 (354)
T ss_pred HHh--hcCCccEEECC------CChh-HHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccC
Confidence 443 23466666644 2111 25677777765442 2456677888888777653 24678888765532
Q ss_pred CCcchhhHHHHHHHhCCcEEEcccccc
Q 021767 232 MGENQLEIKNICDSLGIRLISYSPLGL 258 (308)
Q Consensus 232 ~~~~~~~l~~~~~~~gi~v~a~spl~~ 258 (308)
--..-.++..+|+.+||.++..+...+
T Consensus 264 Git~~~~i~~~A~~~gi~~~~g~~~es 290 (354)
T cd03317 264 GLTEALKIHDLCQEHGIPVWCGGMLES 290 (354)
T ss_pred CHHHHHHHHHHHHHcCCcEEecCcccc
Confidence 111223789999999999976554433
No 183
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=37.58 E-value=1.4e+02 Score=28.68 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=43.1
Q ss_pred cccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC-ccEEEeec--------CCHHHHHHHHHHHHHcCCCceeeee
Q 021767 159 QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSN--------YGPNQLVKIHDYLTARGVPLCSAQV 225 (308)
Q Consensus 159 ~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn--------~~~~~l~~~~~~~~~~~~~~~~~Q~ 225 (308)
-++++-+|+...+.-.++.+..-.++++.++.|+ |+-+=++| ++++++..++..+...++...+-.+
T Consensus 192 gveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEI 267 (471)
T KOG0256|consen 192 GVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEI 267 (471)
T ss_pred CceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehh
Confidence 3578888876544333344445567777777664 77777776 5677888887777766665544444
No 184
>PLN02540 methylenetetrahydrofolate reductase
Probab=37.41 E-value=4.4e+02 Score=26.49 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHH--HhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 73 SQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKF--ISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 73 ~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~--L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+...+.++.-.+.+-.|+|....-|. ..++.-+.-+ +++. . .+-.+-.+.- .+.+...+...+++
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgG----st~~~Tl~la~~lq~~-----~--Gie~i~HLTC--rd~n~~~L~~~L~~ 81 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGG----STADLTLDIANRMQNM-----I--CVETMMHLTC--TNMPVEKIDHALET 81 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCC----CcHHHHHHHHHHHHHh-----c--CCCeeEEeee--cCCCHHHHHHHHHH
Confidence 45566667777789999997755443 3345444333 3321 0 1111222211 13466777777766
Q ss_pred HHHhhCCCcccEEEecCCCCCC-C---C--hhHHHHHHHHHHHHHc-CCccEEEeecCCH------------------HH
Q 021767 151 SLARLQIEQIGIGQLHWSTANY-A---P--PQELALWNGLVAMYEK-GLVRAVGVSNYGP------------------NQ 205 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~~~-~---~--~~~~~~~~~l~~l~~~-G~ir~iGvSn~~~------------------~~ 205 (308)
. ..+|+.. ++.|....... . . .....+.+-++.+++. |..-.|||+.|.. .+
T Consensus 82 a-~~~GIrN--ILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~d 158 (565)
T PLN02540 82 I-KSNGIQN--ILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKD 158 (565)
T ss_pred H-HHCCCCE--EEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHH
Confidence 6 6788754 45555321110 0 0 1112244555555554 4466799997632 24
Q ss_pred HHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCc
Q 021767 206 LVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (308)
Q Consensus 206 l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~ 249 (308)
+..+.+..+ .|..+.+-|.-|+.= .. .+.++.|++.||.
T Consensus 159 l~~Lk~Kvd-AGAdFiITQlfFD~d---~f-~~f~~~~r~~Gi~ 197 (565)
T PLN02540 159 LAYLKEKVD-AGADLIITQLFYDTD---IF-LKFVNDCRQIGIT 197 (565)
T ss_pred HHHHHHHHH-cCCCEEeeccccCHH---HH-HHHHHHHHhcCCC
Confidence 555544433 466688888888751 22 2788999999844
No 185
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.35 E-value=2e+02 Score=30.23 Aligned_cols=96 Identities=8% Similarity=0.008 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc--CCccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GLVRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
+.+.+++-++...........-+|+|...+ .+. ...+++|.+..++ ..+++|-++|.....+.-++..|
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah----~LT-~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC---- 170 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVH----MLT-NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC---- 170 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChh----hCC-HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe----
Confidence 556677766655433333345688887442 222 2357777777776 58999999997655444443332
Q ss_pred CCceeeeeccCcccCCcchhhHHHHHHHhCCc
Q 021767 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~ 249 (308)
.+++|..+....-...|...|++.||.
T Consensus 171 -----q~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 171 -----LQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred -----EEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 344555543222122334445555554
No 186
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=37.30 E-value=2.9e+02 Score=24.34 Aligned_cols=133 Identities=16% Similarity=0.158 Sum_probs=78.0
Q ss_pred HHHHHHHHhhCCCCCCCCC--CEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHH
Q 021767 106 EKLLGKFISEIPGQKQVQN--NIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNG 183 (308)
Q Consensus 106 E~~lG~~L~~~~~~~~~R~--~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~ 183 (308)
+..+.++++.... .+. .+.++..+.+. .+....+...+.+.+++.+++.- -+.+--.+ .........+...
T Consensus 69 ~~v~~~a~~~~~~---~~~~~~~~l~iNis~~--~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE-~~~~~~~~~~~~~ 141 (256)
T COG2200 69 RWVLEEACRQLRT---WPRAGPLRLAVNLSPV--QLRSPGLVDLLLRLLARLGLPPH-RLVLEITE-SALIDDLDTALAL 141 (256)
T ss_pred HHHHHHHHHHHHh---hhhcCCceEEEEcCHH--HhCCchHHHHHHHHHHHhCCCcc-eEEEEEeC-chhhcCHHHHHHH
Confidence 5566666665321 122 47777777432 22334556677778888776543 23333111 1111122357789
Q ss_pred HHHHHHcCCccEEEeecCC--HHHHHHHHHHHHHcCCCceeeeeccCcccCCc---c----hhhHHHHHHHhCCcEEEc
Q 021767 184 LVAMYEKGLVRAVGVSNYG--PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGE---N----QLEIKNICDSLGIRLISY 253 (308)
Q Consensus 184 l~~l~~~G~ir~iGvSn~~--~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~---~----~~~l~~~~~~~gi~v~a~ 253 (308)
++.|++.| + .|.+..|+ ..-+..+.+ .+|+.+-+.-+.+..-. . -..++..|++.|+.+++-
T Consensus 142 l~~L~~~G-~-~ialDDFGtG~ssl~~L~~------l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaE 212 (256)
T COG2200 142 LRQLRELG-V-RIALDDFGTGYSSLSYLKR------LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAE 212 (256)
T ss_pred HHHHHHCC-C-eEEEECCCCCHHHHHHHhh------CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEe
Confidence 99999999 3 37777775 334544433 57888877666554211 1 136899999999999873
No 187
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=37.12 E-value=1.6e+02 Score=28.16 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=89.8
Q ss_pred HcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEE
Q 021767 84 ENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIG 163 (308)
Q Consensus 84 e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~ 163 (308)
+.|-+++|....|+. .-.|++-..+=++|++ .-++++.++.... ......+-+-|-.+-- ..|-+
T Consensus 39 ~~G~~YlDf~~Giav-~~lGH~hP~iv~al~~------Q~~kl~h~sn~~~-------~~~~~~la~~L~~~s~-~~d~v 103 (404)
T COG4992 39 QQGREYLDFAAGIAV-NNLGHCHPALVEALKE------QAEKLWHVSNLFY-------NEPQAELAEKLVELSP-FADRV 103 (404)
T ss_pred CCCCEeeeeccceee-eccCCCCHHHHHHHHH------HHHHhhhcccccC-------ChHHHHHHHHHHhhCc-cccEE
Confidence 357888998887774 2247788888899987 4566666666632 2334455555544432 47777
Q ss_pred EecCCCCCCCChhHHHHHHHHHHHHH-cCCccEEEeec--CCHHH--H-----HHHHHHHHHcC-CCceeeeeccCcccC
Q 021767 164 QLHWSTANYAPPQELALWNGLVAMYE-KGLVRAVGVSN--YGPNQ--L-----VKIHDYLTARG-VPLCSAQVQFSLLSM 232 (308)
Q Consensus 164 ~lH~~~~~~~~~~~~~~~~~l~~l~~-~G~ir~iGvSn--~~~~~--l-----~~~~~~~~~~~-~~~~~~Q~~~~~~~~ 232 (308)
++-+.. ....+.+++.-.+.-. .+|-+-|.+-| |.... + .+..+ ... ..+.+.+++||=.
T Consensus 104 ff~NSG----aEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~---~F~Pl~~g~~~vpfnDi-- 174 (404)
T COG4992 104 FFCNSG----AEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRK---GFGPLLPGFRHVPFNDI-- 174 (404)
T ss_pred EEcCCc----HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhcc---CCCCCCCCceecCCCCH--
Confidence 777431 1122223332222222 23444444332 11100 0 01111 111 3467778887754
Q ss_pred CcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCC
Q 021767 233 GENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGK 302 (308)
Q Consensus 233 ~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 302 (308)
+-++.+-..++.-+...|.-+- +. ..+.....++.++++|++||+
T Consensus 175 -----~al~~ai~~~taAvivEPIQGE---gG-----------------V~~~~~~fl~~lr~lCd~~g~ 219 (404)
T COG4992 175 -----EALEAAIDEDTAAVIVEPIQGE---GG-----------------VIPAPPEFLKALRELCDEHGA 219 (404)
T ss_pred -----HHHHHHhccCeEEEEEecccCC---CC-----------------CCCCCHHHHHHHHHHHHHhCe
Confidence 3344444447777777777541 11 112234456899999999985
No 188
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.96 E-value=3e+02 Score=25.77 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcC--C--ccEEEee--cCCHHHHHHHHHHHHHcCCCceeeeeccCcccCC----cch---hhHHHHHH
Q 021767 178 LALWNGLVAMYEKG--L--VRAVGVS--NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMG----ENQ---LEIKNICD 244 (308)
Q Consensus 178 ~~~~~~l~~l~~~G--~--ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~----~~~---~~l~~~~~ 244 (308)
+++++++.+..+.+ + ++++=+. |-+.+++.++.+.++. .+..++=++||++... +.. ..+.+..+
T Consensus 234 ~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~--l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~ 311 (349)
T PRK14463 234 AELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSD--IPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLL 311 (349)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc--cCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 45677776666544 2 3444443 5567889988888764 3456777899997532 111 34577788
Q ss_pred HhCCcEEEcccccc------cccCCCC
Q 021767 245 SLGIRLISYSPLGL------GMLTGKY 265 (308)
Q Consensus 245 ~~gi~v~a~spl~~------G~L~~~~ 265 (308)
++||.+......|. |.|..+.
T Consensus 312 ~~gi~v~vR~~~G~di~aaCGqL~~~~ 338 (349)
T PRK14463 312 DKHVTVITRSSRGSDISAACGQLKGKL 338 (349)
T ss_pred HCCceEEEeCCCCcchhhccCcccccc
Confidence 99999998877765 5555443
No 189
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=36.71 E-value=2.2e+02 Score=25.94 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccc
Q 021767 182 NGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGM 260 (308)
Q Consensus 182 ~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 260 (308)
+.+.++.++-.+. ..|=|-++..++.++++. ...+++|+.....---..-..+.+.|+.+||.++..+.+.+|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~-----~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGP-----GWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhc-----CCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 4556666554322 345556677776666542 2366777766543211122478999999999999777666654
No 190
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=36.63 E-value=2.3e+02 Score=26.26 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCccEEEeecCC-------HHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHH
Q 021767 182 NGLVAMYEKGLVRAVGVSNYG-------PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICD 244 (308)
Q Consensus 182 ~~l~~l~~~G~ir~iGvSn~~-------~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~ 244 (308)
++++++++.|.-|.|-+|-|. ...+..+.+..++.+...+ +.++++++++.+..++....
T Consensus 144 ea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~---~~wsiIdrW~t~~glIkafA 210 (395)
T KOG1321|consen 144 EALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERD---IKWSIIDRWPTREGLIKAFA 210 (395)
T ss_pred HHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccC---CceEeeccccccchHHHHHH
Confidence 789999999999999988653 3446666666665554433 57788898887656555443
No 191
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=36.37 E-value=3.2e+02 Score=24.53 Aligned_cols=158 Identities=13% Similarity=0.184 Sum_probs=85.6
Q ss_pred CCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHH
Q 021767 69 ESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~ 148 (308)
..+.++..++++.+.+.|+..|.-.. |.|--...-..++. .+++. .-.++.|+|..- .+ ...
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~iv~-~l~~~-----g~~~v~i~TNG~---------ll-~~~ 100 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITG--GEPLLRKDLIEIIR-RIKDY-----GIKDVSMTTNGI---------LL-EKL 100 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC--cccccccCHHHHHH-HHHhC-----CCceEEEEcCch---------HH-HHH
Confidence 46778899999999999998776432 21111111122222 23331 112567777541 11 123
Q ss_pred HHHHHhhCCCcccEEEecCCCCC-C----CChhHHHHHHHHHHHHHcCC----ccEEEeecCCHHHHHHHHHHHHHcCCC
Q 021767 149 RASLARLQIEQIGIGQLHWSTAN-Y----APPQELALWNGLVAMYEKGL----VRAVGVSNYGPNQLVKIHDYLTARGVP 219 (308)
Q Consensus 149 e~sL~~L~~d~iDl~~lH~~~~~-~----~~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~~~~ 219 (308)
-..|.+.|++.|- +-++..++. + .......+++.++.+++.|. |..+.+-+.+.+++.++++.+...++.
T Consensus 101 ~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~~ 179 (302)
T TIGR02668 101 AKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGAI 179 (302)
T ss_pred HHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCE
Confidence 3345666766544 233433211 0 11134568999999999985 234445557888899999888776653
Q ss_pred ceeeeeccCcccCC--------cchhhHHHHHHHhC
Q 021767 220 LCSAQVQFSLLSMG--------ENQLEIKNICDSLG 247 (308)
Q Consensus 220 ~~~~Q~~~~~~~~~--------~~~~~l~~~~~~~g 247 (308)
+.=++|.+.... ....++.+..+++.
T Consensus 180 --~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~~~ 213 (302)
T TIGR02668 180 --LQLIELMPPGEGEKEFKKYHEDIDPIEEELEKMA 213 (302)
T ss_pred --EEEEEEeECCCCccchhhceecHHHHHHHHHHhc
Confidence 333455554321 11235666666653
No 192
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=36.30 E-value=3.5e+02 Score=24.97 Aligned_cols=13 Identities=23% Similarity=0.141 Sum_probs=6.7
Q ss_pred HHHHHHHHHHcCC
Q 021767 180 LWNGLVAMYEKGL 192 (308)
Q Consensus 180 ~~~~l~~l~~~G~ 192 (308)
+.+.++.+++.|.
T Consensus 70 ~~~ii~~~~~~g~ 82 (358)
T TIGR02109 70 LVELVAHARRLGL 82 (358)
T ss_pred HHHHHHHHHHcCC
Confidence 4455555555553
No 193
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=36.16 E-value=1.4e+02 Score=27.37 Aligned_cols=169 Identities=18% Similarity=0.272 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCC-ceeCCcCCCCCCCCCchHHHHHHHHh---hCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHH
Q 021767 73 SQLQQTFNLAVENGIN-LFDTADSYGTGRLNGKSEKLLGKFIS---EIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (308)
Q Consensus 73 ~~~~~~l~~A~e~Gi~-~~DtA~~Yg~~~~~g~sE~~lG~~L~---~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~ 148 (308)
+...++++.|.+.|+. .||.=..+-. +..+--+.+ ... ..+..++++--.-- ..+++.+.+.+
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~-------~~~~~~~~~~~~~~~---~~~~~vg~tlQaYL---~~t~~~l~~l~ 158 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ-------DAILDLFLELMRKYN---KGWPNVGITLQAYL---KRTPDDLERLL 158 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH-------HHHHHHHHHHCCHHG---TT--SEEEEEETTB---TTHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch-------HHHHHHHHHHhhHhh---CCCCeEEEEEechh---hchHHHHHHHH
Confidence 3577889999999988 5675555443 444333333 111 13445555554421 22677777777
Q ss_pred HHHHHhhCCCcccEEEec---------------CCCCC-C-CChhHHHHHHHHHHHHHcCC-c--cEEEeecCCHHHHHH
Q 021767 149 RASLARLQIEQIGIGQLH---------------WSTAN-Y-APPQELALWNGLVAMYEKGL-V--RAVGVSNYGPNQLVK 208 (308)
Q Consensus 149 e~sL~~L~~d~iDl~~lH---------------~~~~~-~-~~~~~~~~~~~l~~l~~~G~-i--r~iGvSn~~~~~l~~ 208 (308)
+.+-++ |. .+.+=++- +++.. + ...........+..+..++. - -+++|.+|+...+..
T Consensus 159 ~~a~~~-g~-~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~~ 236 (313)
T PF01619_consen 159 ELARRR-GF-RLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIAL 236 (313)
T ss_dssp HHHHHT-TS--EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHHH
T ss_pred HHHHHc-CC-eEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHHH
Confidence 666541 21 12221111 11000 0 11122234556666555554 3 589999999999999
Q ss_pred HHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccc
Q 021767 209 IHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGL 258 (308)
Q Consensus 209 ~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 258 (308)
+.+.+...+.++.--+++|-.+. +.. +++.....+.|..+.-|.|+|.
T Consensus 237 a~~l~~~~~~~~~~~~~efq~L~-Gm~-d~l~~~L~~~g~~v~~YvP~G~ 284 (313)
T PF01619_consen 237 ALELAEELGIPPNDDRVEFQQLY-GMA-DDLSRALAQAGYRVRKYVPYGP 284 (313)
T ss_dssp HHHHHHCTT-GG--GGEEEEEET-TSS-HHHHHHHHHHTSEEEEEEEESE
T ss_pred HHHHHHHcCCCcccccEEeehhc-cCC-HHHHHHHHhCCCCEEEEEecCC
Confidence 99988877765522233333332 122 2788888999999999999983
No 194
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=36.05 E-value=3.1e+02 Score=24.29 Aligned_cols=104 Identities=8% Similarity=-0.017 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCC
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVP 219 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 219 (308)
+++.+.+..++.++ -|.|+||+-. .|. . .+ +.++.-+.+..+++.-.+ -|.|=+++++.++.+++.+. | .
T Consensus 24 ~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~-~~-~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~e~aL~~~~--G-~ 93 (252)
T cd00740 24 DYDEALDVARQQVE-GGAQILDLNV--DYG-G-LD-GVSAMKWLLNLLATEPTV-PLMLDSTNWEVIEAGLKCCQ--G-K 93 (252)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEECC--CCC-C-CC-HHHHHHHHHHHHHHhcCC-cEEeeCCcHHHHHHHHhhCC--C-C
Confidence 66777777777665 5999999854 232 1 11 222333333333332222 37788889999988877531 3 2
Q ss_pred ceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccc
Q 021767 220 LCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSP 255 (308)
Q Consensus 220 ~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 255 (308)
..+|-+.....+ .....+++.++++|..++.+..
T Consensus 94 ~iINsIs~~~~~--e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 94 CVVNSINLEDGE--ERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred cEEEeCCCCCCc--cccHHHHHHHHHhCCCEEEecc
Confidence 344444322111 1123788999999999887543
No 195
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.90 E-value=3.5e+02 Score=24.82 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=14.0
Q ss_pred hHHHHHHHhCCcE--EEcccccc
Q 021767 238 EIKNICDSLGIRL--ISYSPLGL 258 (308)
Q Consensus 238 ~l~~~~~~~gi~v--~a~spl~~ 258 (308)
+++++++++|+.+ +-+.|++.
T Consensus 174 ~~~~~~~~~gi~~~~ie~mP~g~ 196 (329)
T PRK13361 174 DLVEFCRERGLDIAFIEEMPLGE 196 (329)
T ss_pred HHHHHHHhcCCeEEEEecccCCC
Confidence 4588888888765 45566654
No 196
>PRK09989 hypothetical protein; Provisional
Probab=35.87 E-value=3e+02 Score=24.03 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=11.0
Q ss_pred hHHHHHHHhCCcEE
Q 021767 238 EIKNICDSLGIRLI 251 (308)
Q Consensus 238 ~l~~~~~~~gi~v~ 251 (308)
..++.|++.|...+
T Consensus 89 ~~i~~A~~lg~~~v 102 (258)
T PRK09989 89 LALEYALALNCEQV 102 (258)
T ss_pred HHHHHHHHhCcCEE
Confidence 67888888888766
No 197
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=35.68 E-value=3.1e+02 Score=24.13 Aligned_cols=91 Identities=12% Similarity=-0.019 Sum_probs=45.8
Q ss_pred HHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecC-CHHHHHHHHHHHHHcCCCceeeeeccC
Q 021767 150 ASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY-GPNQLVKIHDYLTARGVPLCSAQVQFS 228 (308)
Q Consensus 150 ~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~~Q~~~~ 228 (308)
+.|+++|. |.+.+|..+.+-..... -|+.+.++++.-.+.-|..-.. +.+++.++.+. .+ .+.+.+---
T Consensus 162 ~~l~~~G~---~~iivt~i~~~g~~~g~--~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~---g~--~dgv~~g~a 231 (254)
T TIGR00735 162 KEVEKLGA---GEILLTSMDKDGTKSGY--DLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK---GK--ADAALAASV 231 (254)
T ss_pred HHHHHcCC---CEEEEeCcCcccCCCCC--CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---CC--cceeeEhHH
Confidence 34456664 55666644322110011 2455666666655665554433 56777776553 21 333322111
Q ss_pred cccCCcchhhHHHHHHHhCCcE
Q 021767 229 LLSMGENQLEIKNICDSLGIRL 250 (308)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~gi~v 250 (308)
+........++.+.|+++||.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 232 FHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HhCCCCCHHHHHHHHHHCCCcc
Confidence 1112233348899999999864
No 198
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=35.59 E-value=2.9e+02 Score=23.84 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCC------HHHHHHHHHH
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYG------PNQLVKIHDY 212 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~------~~~l~~~~~~ 212 (308)
.+.+.-.+-++....+++.||+|+=+-. + .+..+.+.+..+.+.++-|+ |.|+ .+.+...++.
T Consensus 75 ~~~~~~~~ll~~~~~~~~~d~vDiEl~~-~---------~~~~~~l~~~~~~~~~kvI~-S~H~f~~tp~~~~l~~~~~~ 143 (228)
T TIGR01093 75 GNEEEYLEELKRAADSPGPDFVDIELFL-P---------DDAVKELINIAKKGGTKIIM-SYHDFQKTPSWEEIVERLEK 143 (228)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEccC-C---------HHHHHHHHHHHHHCCCEEEE-eccCCCCCCCHHHHHHHHHH
Confidence 3544444556666678899999983322 1 11344444444567788776 5552 3455555555
Q ss_pred HHHcCCCceeeeeccCcccCCcchhhHHHHHHHh----CCcEEEcc
Q 021767 213 LTARGVPLCSAQVQFSLLSMGENQLEIKNICDSL----GIRLISYS 254 (308)
Q Consensus 213 ~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~----gi~v~a~s 254 (308)
+...| .+++-+-..+-+... ...++.+.++. .+.+++++
T Consensus 144 ~~~~g--aDivKia~~a~~~~D-~~~ll~~~~~~~~~~~~p~i~~~ 186 (228)
T TIGR01093 144 ALSYG--ADIVKIAVMANSKED-VLTLLEITNKVDEHADVPLITMS 186 (228)
T ss_pred HHHhC--CCEEEEEeccCCHHH-HHHHHHHHHHHHhcCCCCEEEEe
Confidence 55544 444444333322211 12455554332 45665544
No 199
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=35.56 E-value=54 Score=31.23 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=45.3
Q ss_pred EeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhC--CcEEEcccccccccCCCCCCCCCCCCc
Q 021767 197 GVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLG--IRLISYSPLGLGMLTGKYTPSKLPRGP 274 (308)
Q Consensus 197 GvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~g--i~v~a~spl~~G~L~~~~~~~~~~~~~ 274 (308)
.+...+.+.+-+.++.=...|+.|.++-.-. .. +.++.+++.+ ++++++ |+.+++ .|--.+-.++|
T Consensus 133 ~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi-------~~-~~~~~~~~~~R~~giVSR---GGs~~~-~WM~~~~~ENP 200 (423)
T TIGR00190 133 AVEDMDEDDMFRAIEKQAKDGVDFMTIHAGV-------LL-EYVERLKRSGRITGIVSR---GGAILA-AWMLHHHKENP 200 (423)
T ss_pred ChhhCCHHHHHHHHHHHHHhCCCEEEEccch-------hH-HHHHHHHhCCCccCeecC---cHHHHH-HHHHHcCCcCc
Confidence 6677788876666554333556555543322 22 7788888744 455542 222222 21100001111
Q ss_pred hhhhhhccccChHHHHHHHHHHHHHhCCCcc
Q 021767 275 RALLFRQILPGLKPLLRSLKEIAERRGKTIP 305 (308)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~a 305 (308)
. -+-.+.|-+||++|.+|.+
T Consensus 201 l-----------ye~fD~lLeI~~~yDVtlS 220 (423)
T TIGR00190 201 L-----------YKNFDYILEIAKEYDVTLS 220 (423)
T ss_pred h-----------HHHHHHHHHHHHHhCeeee
Confidence 1 2224688899999988753
No 200
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=35.56 E-value=3.3e+02 Score=24.42 Aligned_cols=83 Identities=6% Similarity=0.082 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCC----CCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTG----RLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVN 146 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~----~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~ 146 (308)
+.++..+..+.+.+.|+..||.--...+. ...+...+.+-+.++... ..-++-|..|+.+. .+.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr----~~~~~Pv~vKl~~~-----~~~~~- 169 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK----KATDVPVIVKLTPN-----VTDIV- 169 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH----hccCCCEEEEeCCC-----chhHH-
Confidence 35778888888889999998863222110 012235666666666521 11167788898542 12222
Q ss_pred HHHHHHHhhCCCcccEE
Q 021767 147 ACRASLARLQIEQIGIG 163 (308)
Q Consensus 147 ~~e~sL~~L~~d~iDl~ 163 (308)
.+-+.++..|.|.+++.
T Consensus 170 ~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 170 EIARAAEEAGADGLTLI 186 (296)
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 33345677888777653
No 201
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=35.54 E-value=2.3e+02 Score=24.74 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=33.2
Q ss_pred HHHHHHHHHHc-CCccEEEeecC----C-HHHHHHHHHHHHHcCCCceeeeeccCcccCCcc-----hhhHHHHHHHhCC
Q 021767 180 LWNGLVAMYEK-GLVRAVGVSNY----G-PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGEN-----QLEIKNICDSLGI 248 (308)
Q Consensus 180 ~~~~l~~l~~~-G~ir~iGvSn~----~-~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~-----~~~l~~~~~~~gi 248 (308)
+.++++.+++. |++.-+|+.+. + .++|..+++.++..|++...+..-.-=-|..+. -.++.+.|++.|+
T Consensus 16 l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~ 95 (223)
T PF06415_consen 16 LLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAEIGI 95 (223)
T ss_dssp HHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 44555555543 44555665542 2 355666666666666543323221111111111 1356666666666
Q ss_pred cEEE
Q 021767 249 RLIS 252 (308)
Q Consensus 249 ~v~a 252 (308)
+-+|
T Consensus 96 g~IA 99 (223)
T PF06415_consen 96 GRIA 99 (223)
T ss_dssp TEEE
T ss_pred ceEE
Confidence 6544
No 202
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=35.44 E-value=4.6e+02 Score=26.03 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=58.4
Q ss_pred eCCcCCCCCCCCCchHHHHHHHHhhCCCCCC-CCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCC
Q 021767 91 DTADSYGTGRLNGKSEKLLGKFISEIPGQKQ-VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWST 169 (308)
Q Consensus 91 DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~-~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~ 169 (308)
+..-+||. |+.|-++|++..+ .. ..+-++|.|-+.. ...-++|..-+++.-++.. -++++.+|.|+
T Consensus 104 E~diVfGG-------e~kL~~~I~ea~~-~~~~p~~I~V~tTC~t---~lIGDDi~av~k~~~~~~~--~~pVi~v~tpG 170 (513)
T TIGR01861 104 EKHVVFGA-------EKLLKQNIIEAFK-AFPHIKRMTIYQTCAT---ALIGDDIAAIAKEVMEEMP--DVDIFVCNSPG 170 (513)
T ss_pred cCceEeCc-------HHHHHHHHHHHHH-hCCCCCeEEEEccCch---hhccCCHHHHHHHHHHhcC--CCcEEEEeCCC
Confidence 34457886 7755555544211 02 2456888888743 2233444444444444431 26899999886
Q ss_pred CCCCChh--HHHHHHH-HHHHHH--------cCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 170 ANYAPPQ--ELALWNG-LVAMYE--------KGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 170 ~~~~~~~--~~~~~~~-l~~l~~--------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
..-.... ...+.++ ++++.. .+.|.-||-.|+.. .+.++.++++..|+.+
T Consensus 171 F~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~g-D~~eik~lLe~~Gl~v 231 (513)
T TIGR01861 171 FAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQG-DQEVMVDYFQRMGIQV 231 (513)
T ss_pred ccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCcc-CHHHHHHHHHHCCCeE
Confidence 4321111 1112222 233331 25688888666533 2344444455556544
No 203
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=35.29 E-value=3e+02 Score=23.87 Aligned_cols=145 Identities=9% Similarity=0.029 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHH
Q 021767 73 SQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASL 152 (308)
Q Consensus 73 ~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL 152 (308)
....+++..|.+.|+..|=.+++....+ ..+. ..+.+ .+=+|+...-+.. ...+.+..- +
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~---~~~~-~~~~~--------~~i~Il~GiEi~~----~~~~~~~~~----~ 75 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYP---ESKP-ELEDL--------LGFEIFRGVEIVA----SNPSKLRGL----V 75 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCccccc---chhH-HHHHh--------cCCcEEeeEEEec----CCHHHHHHH----H
Confidence 4678999999999999886665543200 0111 11111 1112222222211 133333333 3
Q ss_pred HhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecC---CHHHHHHHHHHHHHcCCCceeeeeccCc
Q 021767 153 ARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY---GPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~~~~~ 229 (308)
++. .+.+|++.+| +.. + +..+.+.+.+.|.-||--.. ....-+.+.+.+...++.+. ++++.
T Consensus 76 ~~~-~~~~d~v~v~-~~~-------~---~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lE---In~s~ 140 (237)
T PRK00912 76 GKF-RKKVDVLAVH-GGD-------E---KVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIE---FNLRD 140 (237)
T ss_pred Hhc-cCcccEEEEe-CCC-------H---HHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEE---EEchH
Confidence 332 2357888899 211 1 12235778888887775421 11112344455666665444 44544
Q ss_pred ccCCc---------chhhHHHHHHHhCCcEEE
Q 021767 230 LSMGE---------NQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 230 ~~~~~---------~~~~l~~~~~~~gi~v~a 252 (308)
+-... ....++..|++.|+.++.
T Consensus 141 ~~~~~~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 141 ILKSRGGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 32111 113789999999988864
No 204
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=35.06 E-value=3.2e+02 Score=24.12 Aligned_cols=17 Identities=0% Similarity=-0.001 Sum_probs=11.7
Q ss_pred HHHHhhCCCcccEEEec
Q 021767 150 ASLARLQIEQIGIGQLH 166 (308)
Q Consensus 150 ~sL~~L~~d~iDl~~lH 166 (308)
+.++.+|.|++.+.+-+
T Consensus 17 ~~a~~~G~d~vEl~~~~ 33 (279)
T cd00019 17 KRAKEIGFDTVAMFLGN 33 (279)
T ss_pred HHHHHcCCCEEEEEcCC
Confidence 34567899988876533
No 205
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=34.87 E-value=1e+02 Score=29.82 Aligned_cols=110 Identities=11% Similarity=0.027 Sum_probs=70.7
Q ss_pred CCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChH--HHH------HHH--HHHHHhhCCCcccEEEecCCCC
Q 021767 101 LNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPG--QFV------NAC--RASLARLQIEQIGIGQLHWSTA 170 (308)
Q Consensus 101 ~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~--~i~------~~~--e~sL~~L~~d~iDl~~lH~~~~ 170 (308)
-.|.-|.++.-+-+.+. +-.+.+++|+.-+|.-... .+- .+. -.+ .+.-.||.+.|+|.. .
T Consensus 146 vqGTyeT~~~~~r~h~~--gdL~Gk~~lTaGLGGMgGA-QplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~----a-- 216 (561)
T COG2987 146 VQGTYETFAEAGRQHFG--GDLKGKWVLTAGLGGMGGA-QPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI----A-- 216 (561)
T ss_pred eechHHHHHHHHHHhcC--CCccceEEEecCCCccccc-chHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh----c--
Confidence 44678888777766553 3578889999988742100 000 000 001 223368889999852 1
Q ss_pred CCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceee--eecc
Q 021767 171 NYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSA--QVQF 227 (308)
Q Consensus 171 ~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~--Q~~~ 227 (308)
. +.+++++-.++..++|+-.+||+-.--++.+.++++ .++.|+++ |...
T Consensus 217 --~--~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~----r~~~pD~vtDQTsa 267 (561)
T COG2987 217 --E--TLDEALALAEEATAAGEPISIGLLGNAAEILPELLR----RGIRPDLVTDQTSA 267 (561)
T ss_pred --C--CHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHH----cCCCCceecccccc
Confidence 1 234588999999999999999998867777777655 46666665 6543
No 206
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.86 E-value=3.6e+02 Score=24.62 Aligned_cols=109 Identities=11% Similarity=0.057 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCCh---hHHHHHHHHHHHHHcCCc-cEEEeecCCHHHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPP---QELALWNGLVAMYEKGLV-RAVGVSNYGPNQLVKIHDYL 213 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~---~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~ 213 (308)
..+.+.+++-++..+. -| +|=+++-.-..+...+ +..++++...+.. .|++ --+|++..+..+..++.+.+
T Consensus 25 ~iD~~~l~~lv~~li~-~G---v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 25 TVDLDETARLVERLIA-AG---VDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEeccCCHHHHHHHHHHH
Confidence 4577777777776665 44 4555554332232222 3334555555444 4544 35699888888877777878
Q ss_pred HHcCCC-ceeeeeccCcccCCcchhhHHHHH----HHh-CCcEEEccc
Q 021767 214 TARGVP-LCSAQVQFSLLSMGENQLEIKNIC----DSL-GIRLISYSP 255 (308)
Q Consensus 214 ~~~~~~-~~~~Q~~~~~~~~~~~~~~l~~~~----~~~-gi~v~a~sp 255 (308)
.+.|.. +.+....|... .+++++++. +.- ++.++.|..
T Consensus 100 ~~~Gad~vlv~~P~y~~~----~~~~l~~yf~~va~a~~~lPv~iYn~ 143 (309)
T cd00952 100 LDLGADGTMLGRPMWLPL----DVDTAVQFYRDVAEAVPEMAIAIYAN 143 (309)
T ss_pred HHhCCCEEEECCCcCCCC----CHHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 877765 33333334333 233565544 455 589998843
No 207
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.55 E-value=1.1e+02 Score=27.98 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccCcc------------cCC----cchhhHHHHHHHhCCcEEEcc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFSLL------------SMG----ENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~------------~~~----~~~~~l~~~~~~~gi~v~a~s 254 (308)
+.+++.++++..++.++|++++.+...-. ... +...++++..+++|+.++.+-
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v 90 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVIT 90 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEE
Confidence 56777777777788888888887753321 111 222589999999999987653
No 208
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=34.48 E-value=2.2e+02 Score=30.47 Aligned_cols=115 Identities=12% Similarity=0.016 Sum_probs=62.5
Q ss_pred CcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhh-CCCcccEEEecCCCCC
Q 021767 93 ADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARL-QIEQIGIGQLHWSTAN 171 (308)
Q Consensus 93 A~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L-~~d~iDl~~lH~~~~~ 171 (308)
.-+||. |+.|-++|+...+ +.+.+=|+|.|-+..- .--+++..-+++.-++. ....+.++.++.|+..
T Consensus 550 ~~VfGG-------~~~L~~~I~~~~~-~~~p~~I~V~tTc~~e---iIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~ 618 (917)
T PRK14477 550 TAIFGG-------WENLKQGILRVIE-KFKPKVIGVMTTGLTE---TMGDDVRSAIVQFREEHPELDDVPVVWASTPDYC 618 (917)
T ss_pred ceEECc-------HHHHHHHHHHHHH-hcCCCEEEEECCchHh---hhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCc
Confidence 347776 7777777765321 1235557777777321 11122222222222221 1123689999988643
Q ss_pred CCChhHHHHHHHHHHHH---------HcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 172 YAPPQELALWNGLVAMY---------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 172 ~~~~~~~~~~~~l~~l~---------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
- .. ..+...+++.+. ..++|.-||-+|.++..++++.+.+...|+.+
T Consensus 619 G-s~-~~G~~~a~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v 674 (917)
T PRK14477 619 G-SL-QEGYAAAVEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDP 674 (917)
T ss_pred c-CH-HHHHHHHHHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCce
Confidence 2 22 223333333332 35678888877766677777777777777654
No 209
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=34.36 E-value=2.4e+02 Score=24.70 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=10.5
Q ss_pred HHHHHHHHhhCCCcccE
Q 021767 146 NACRASLARLQIEQIGI 162 (308)
Q Consensus 146 ~~~e~sL~~L~~d~iDl 162 (308)
+++=...++||+..+.+
T Consensus 20 ~affa~ak~lg~s~Vei 36 (272)
T COG4130 20 EAFFALAKRLGLSKVEI 36 (272)
T ss_pred HHHHHHHHHcCcceeEE
Confidence 44555567898766543
No 210
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=34.35 E-value=3e+02 Score=24.54 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccccccc
Q 021767 201 YGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 259 (308)
-++.+|.++.+.++..+++..+.+..++. .-+-..+++.|+.++.-.||+.+
T Consensus 204 ps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~~la~~~g~~v~~ld~l~~~ 255 (282)
T cd01017 204 PSPKQLAELVEFVKKSDVKYIFFEENASS-------KIAETLAKETGAKLLVLNPLETL 255 (282)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHHHHHHHHcCCcEEEecccccc
Confidence 36788999999888888887776666553 13344678889998877787764
No 211
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.33 E-value=3.3e+02 Score=24.64 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc-CCccEEEe---ecCCHHHHHHHHHHHHH
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK-GLVRAVGV---SNYGPNQLVKIHDYLTA 215 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~-G~ir~iGv---Sn~~~~~l~~~~~~~~~ 215 (308)
+++.+.+.+++.++ .|.+.+++=+ .. .+.. ..+.++.+++. |.+ .|.+ .+|+.++..++.+.+..
T Consensus 134 ~~~~~~~~~~~~~~-~Gf~~iKik~---g~---~~~~---d~~~v~~lr~~~g~~-~l~vD~n~~~~~~~A~~~~~~l~~ 202 (316)
T cd03319 134 TPEAMAAAAKKAAK-RGFPLLKIKL---GG---DLED---DIERIRAIREAAPDA-RLRVDANQGWTPEEAVELLRELAE 202 (316)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEEe---CC---Chhh---HHHHHHHHHHhCCCC-eEEEeCCCCcCHHHHHHHHHHHHh
Confidence 66777777777665 4666666532 11 1111 23444444442 322 2444 34666665555554443
Q ss_pred cCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 216 RGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 216 ~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
. .+..+.-++..- .-..+-+.++..+|.+.+
T Consensus 203 ~--~l~~iEeP~~~~----d~~~~~~L~~~~~ipIa~ 233 (316)
T cd03319 203 L--GVELIEQPVPAG----DDDGLAYLRDKSPLPIMA 233 (316)
T ss_pred c--CCCEEECCCCCC----CHHHHHHHHhcCCCCEEE
Confidence 2 344444334321 112455556666677654
No 212
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=34.10 E-value=1.7e+02 Score=28.14 Aligned_cols=117 Identities=10% Similarity=0.046 Sum_probs=61.9
Q ss_pred CcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCC
Q 021767 93 ADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANY 172 (308)
Q Consensus 93 A~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~ 172 (308)
.-+||. |+.|-++|++..+ ..+.+=++|.|-+-..--+-+.+.+-+.+++-... ..-+.++.+|.|+..-
T Consensus 70 d~VfGg-------~~~L~~~I~~~~~-~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~--~~~~pvi~v~tpgf~g 139 (432)
T TIGR01285 70 STILGG-------DEHIEEAIDTLCQ-RNKPKAIGLLSTGLTETRGEDIARVVRQFREKHPQ--HKGTAVVTVNTPDFKG 139 (432)
T ss_pred ceEECc-------HHHHHHHHHHHHH-hcCCCEEEEeCCCcccccccCHHHHHHHHHhhccc--ccCCeEEEecCCCcCC
Confidence 347886 7788788765321 12345577777764311112444444433322111 1236788888775431
Q ss_pred CCh--hHHHHHHHHH-HHH--------HcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 173 APP--QELALWNGLV-AMY--------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 173 ~~~--~~~~~~~~l~-~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
.. ....++++|- .+. +.++|.-||-++.++..+.++.+.++..|+++
T Consensus 140 -~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~ 197 (432)
T TIGR01285 140 -SLEDGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKP 197 (432)
T ss_pred -chHHHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCce
Confidence 21 1122333332 222 14568888888776666777777676667655
No 213
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=33.99 E-value=2.2e+02 Score=28.26 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=57.0
Q ss_pred ceeCCcCCCCCC-CCCchHH--HHHHHHhhCCCCCCCCCCEEEEeccCCCC---------CCCCh----HHHHHHHHHHH
Q 021767 89 LFDTADSYGTGR-LNGKSEK--LLGKFISEIPGQKQVQNNIVIATKFAAYP---------WRLTP----GQFVNACRASL 152 (308)
Q Consensus 89 ~~DtA~~Yg~~~-~~g~sE~--~lG~~L~~~~~~~~~R~~v~i~tK~~~~~---------~~~~~----~~i~~~~e~sL 152 (308)
+++|++-|.++. +.|++.. ++...+.++.+ ....+|+..+-+-.+. .+.++ +...+.+.+.+
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r--~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQR--LKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHH--hcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 578888887754 6666554 33444433211 1234566555442210 12233 44567788999
Q ss_pred HhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc
Q 021767 153 ARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR 194 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir 194 (308)
++||+++ |.+.-. .++.-...+.+.+++|++.|.|-
T Consensus 84 ~~l~i~~-d~~~~t-----~~~~~~~~~~~~~~~L~~~G~~y 119 (556)
T PRK12268 84 KKLGISY-DLFTRT-----TSPNHHEVVQEFFLKLYENGYIY 119 (556)
T ss_pred HHcCCcC-CCCcCC-----CCHHHHHHHHHHHHHHHHCCCeE
Confidence 9999974 743211 12333456889999999999864
No 214
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=33.94 E-value=30 Score=24.88 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.7
Q ss_pred ccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 283 LPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 283 ~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
.++..+.+..|.++|++.|++-.+|+
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc 72 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELC 72 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 45677888999999999999987764
No 215
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=33.90 E-value=3.4e+02 Score=24.14 Aligned_cols=111 Identities=7% Similarity=0.022 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhH---HHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQE---LALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLT 214 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~---~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 214 (308)
.++.+.+++-++..++ .| +|-+++-....+...+.. .++.+...+.......-.+|++..+..+..++.+.+.
T Consensus 17 ~iD~~~~~~~i~~l~~-~G---v~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 17 SVDFDALERLIEFQIE-NG---TDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHH
Confidence 4678888888886665 45 455555432222222222 2344444444332234458998888887777777788
Q ss_pred HcCCCceeeeeccCcccCCcchhhHHHHH----HHhCCcEEEccc
Q 021767 215 ARGVPLCSAQVQFSLLSMGENQLEIKNIC----DSLGIRLISYSP 255 (308)
Q Consensus 215 ~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~----~~~gi~v~a~sp 255 (308)
..|..-.++..++.. ...+++++++. +.-++.++.|..
T Consensus 93 ~~G~d~v~~~~P~~~---~~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 93 KAGADAALVVTPYYN---KPSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred HcCCCEEEEcccccC---CCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 777664444444322 12233666655 445889888854
No 216
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.90 E-value=3.4e+02 Score=24.13 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCCh-hHHHHHH--------HHHHHHHcC-CccEEEeecCCHHHHHHH
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPP-QELALWN--------GLVAMYEKG-LVRAVGVSNYGPNQLVKI 209 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~-~~~~~~~--------~l~~l~~~G-~ir~iGvSn~~~~~l~~~ 209 (308)
..+.+++-++.+ .++|+.++-+|.+-.-... .|. +...+++ .+..+.+.| +|+.||=-+.=++.+.+.
T Consensus 43 G~~~l~~i~~~c-~~lgI~~lTvYaFS~eN~~-R~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~viGd~~~Lp~~l~~~ 120 (249)
T PRK14834 43 GVEALRRVVRAA-GELGIGYLTLFAFSSENWS-RPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGERAGLEADICAL 120 (249)
T ss_pred HHHHHHHHHHHH-HHcCCCEEEEEEEeccccC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcChhhCCHHHHHH
Confidence 344444444444 4689999999998732111 222 2222222 334456667 688999655545555544
Q ss_pred HHH
Q 021767 210 HDY 212 (308)
Q Consensus 210 ~~~ 212 (308)
++.
T Consensus 121 i~~ 123 (249)
T PRK14834 121 LNE 123 (249)
T ss_pred HHH
Confidence 443
No 217
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=33.89 E-value=30 Score=20.68 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhCCCcccC
Q 021767 288 PLLRSLKEIAERRGKTIPQL 307 (308)
Q Consensus 288 ~~~~~l~~ia~~~g~s~aqv 307 (308)
+..+.|.++|++.|.|.+++
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ 28 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSEL 28 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHH
Confidence 45579999999999987654
No 218
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.82 E-value=3.3e+02 Score=23.97 Aligned_cols=130 Identities=10% Similarity=0.096 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH-cCCccEEEeecCCHHHHHHHHHHHHH
Q 021767 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE-KGLVRAVGVSNYGPNQLVKIHDYLTA 215 (308)
Q Consensus 137 ~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~-~G~ir~iGvSn~~~~~l~~~~~~~~~ 215 (308)
+.++.+...+-++. |.++|+++|++- .|.....-|+.++.+.+ ...++..+.+..+.+.++.+.+.
T Consensus 15 ~~~~~~~k~~i~~~-L~~~Gv~~iE~g---------~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~--- 81 (259)
T cd07939 15 VAFSREEKLAIARA-LDEAGVDEIEVG---------IPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC--- 81 (259)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEe---------cCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC---
Q ss_pred cCCCceeeeeccCcccC--------------CcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhc
Q 021767 216 RGVPLCSAQVQFSLLSM--------------GENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQ 281 (308)
Q Consensus 216 ~~~~~~~~Q~~~~~~~~--------------~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~ 281 (308)
.++.+.+-++.-+. .... +.+++|+++|+.+....+..+
T Consensus 82 ---g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~-~~i~~a~~~G~~v~~~~~~~~----------------------- 134 (259)
T cd07939 82 ---GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLR-RLVGRAKDRGLFVSVGAEDAS----------------------- 134 (259)
T ss_pred ---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHH-HHHHHHHHCCCeEEEeeccCC-----------------------
Q ss_pred cccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 282 ILPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 282 ~~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
....+.+..+.+.+.+.|+..-.++
T Consensus 135 --~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 135 --RADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred --CCCHHHHHHHHHHHHHCCCCEEEeC
No 219
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=33.57 E-value=2.1e+02 Score=26.98 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=7.6
Q ss_pred hHHHHHHHhCCcEEE
Q 021767 238 EIKNICDSLGIRLIS 252 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a 252 (308)
.+++.|+++||.|+.
T Consensus 62 ~~L~~~~~~gIkvI~ 76 (362)
T PF07287_consen 62 PLLPAAAEKGIKVIT 76 (362)
T ss_pred HHHHHHHhCCCCEEE
Confidence 345555555555543
No 220
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=33.46 E-value=55 Score=25.15 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCC
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGT 98 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~ 98 (308)
+.+...+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 4567889999999999999999999964
No 221
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=33.41 E-value=1.3e+02 Score=27.29 Aligned_cols=53 Identities=9% Similarity=0.189 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCCceeeeeccCcccC--------C----cchhhHHHHHHHhCCcEEEc
Q 021767 201 YGPNQLVKIHDYLTARGVPLCSAQVQFSLLSM--------G----ENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~--------~----~~~~~l~~~~~~~gi~v~a~ 253 (308)
.+.+++.++++..++.++|++++++...-... . +...++++..+++|+.++.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~ 85 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLW 85 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEE
Confidence 46777888777788888888887776433221 1 12257999999999998765
No 222
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=33.41 E-value=19 Score=24.49 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=14.3
Q ss_pred HHHHHHHHhCCCcccC
Q 021767 292 SLKEIAERRGKTIPQL 307 (308)
Q Consensus 292 ~l~~ia~~~g~s~aqv 307 (308)
.+.+||+++|+|+.+|
T Consensus 24 ~lkdIA~~Lgvs~~tI 39 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTI 39 (60)
T ss_pred cHHHHHHHHCCCHHHH
Confidence 6899999999998876
No 223
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=33.35 E-value=3.9e+02 Score=24.60 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCccEEEeec----CCHHHH-HHHHHHHHHcCCCceeeeeccCccc-CCcchhhHHHHHHHhCCcEEEc
Q 021767 180 LWNGLVAMYEKGLVRAVGVSN----YGPNQL-VKIHDYLTARGVPLCSAQVQFSLLS-MGENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 180 ~~~~l~~l~~~G~ir~iGvSn----~~~~~l-~~~~~~~~~~~~~~~~~Q~~~~~~~-~~~~~~~l~~~~~~~gi~v~a~ 253 (308)
+.+-++.+..-..++.+|+.+ ..+..+ +++++.++..+.+ .+.++++|-.. -.....+-++.+++.||.+...
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~-~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~q 239 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQ-TVLVVHINHANEIDAEVADALAKLRNAGITLLNQ 239 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCc-EEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEec
Confidence 556667777777888888763 333433 2333334333322 22334554221 0111235677888889998888
Q ss_pred ccccccc
Q 021767 254 SPLGLGM 260 (308)
Q Consensus 254 spl~~G~ 260 (308)
+++..|.
T Consensus 240 tvllkgi 246 (321)
T TIGR03821 240 SVLLRGV 246 (321)
T ss_pred ceeeCCC
Confidence 8887663
No 224
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=33.30 E-value=1.9e+02 Score=24.40 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=37.3
Q ss_pred HHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeec-CCHHHHHHHHHHHHHcCCCceeeeeccCc
Q 021767 152 LARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN-YGPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (308)
Q Consensus 152 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~ 229 (308)
+..+++||+=+.+. |... ..++ .+.+.++.+.-.-+.+||.- -+.+.+.++.+. ..++++|++-+-
T Consensus 15 ~~~~g~d~~Gfi~~--~~S~-R~v~----~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-----~~ld~vQLHG~e 81 (197)
T PF00697_consen 15 AAELGADYLGFIFY--PKSP-RYVS----PDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-----LGLDVVQLHGDE 81 (197)
T ss_dssp HHHHTSSEEEEE----TTCT-TB------HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-----CTESEEEE-SGG
T ss_pred HHHcCCCEEeeecC--CCCC-CccC----HHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-----cCCCEEEECCCC
Confidence 35699999887643 3211 1222 34555665555555899864 345556655443 579999987654
No 225
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=32.90 E-value=2.5e+02 Score=23.14 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHH
Q 021767 179 ALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDY 212 (308)
Q Consensus 179 ~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 212 (308)
++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 96 ~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 96 DVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred CHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 4678999999988 55566888777766665543
No 226
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=32.81 E-value=3.7e+02 Score=24.25 Aligned_cols=111 Identities=8% Similarity=0.068 Sum_probs=63.2
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH--cCCccE-EEeecCCHHHHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLVRA-VGVSNYGPNQLVKIHDYLT 214 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~-iGvSn~~~~~l~~~~~~~~ 214 (308)
..+.+.+++-++..+. -| +|=+++-.-..+...++.++-.+.++...+ .|++.= .||+..+..+..++.+.+.
T Consensus 17 ~iD~~~l~~lv~~~~~-~G---v~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~ 92 (294)
T TIGR02313 17 DIDEEALRELIEFQIE-GG---SHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAE 92 (294)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHH
Confidence 4577888888877775 35 455555544333333333333444444433 465543 5888777766666666677
Q ss_pred HcCCCceeeeeccCcccCCcchhhHHHH----HHHh-CCcEEEccc
Q 021767 215 ARGVPLCSAQVQFSLLSMGENQLEIKNI----CDSL-GIRLISYSP 255 (308)
Q Consensus 215 ~~~~~~~~~Q~~~~~~~~~~~~~~l~~~----~~~~-gi~v~a~sp 255 (308)
+.|..-.++..+|..- +.+++++++ |+.- ++.++.|.-
T Consensus 93 ~~Gad~v~v~pP~y~~---~~~~~l~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 93 EAGADAAMVIVPYYNK---PNQEALYDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred HcCCCEEEEcCccCCC---CCHHHHHHHHHHHHHhccCCCEEEEeC
Confidence 7776544454554321 223355554 4555 788888854
No 227
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.81 E-value=1.9e+02 Score=24.77 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 141 PGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 141 ~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
...+.+.+++.++.+|.+. .++ .. ...+ .....+.++.+.++| +..|=++..++..+...++.+...|+|+
T Consensus 13 ~~~~~~g~~~~a~~~g~~~-~~~-~~---~~~d---~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpv 83 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEV-EIV-FD---AQND---PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPV 83 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEE-EEE-EE---STTT---HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCEE-EEe-CC---CCCC---HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceE
Confidence 4667888999999998633 322 11 1222 234568889998888 8888888777766666666677777765
Q ss_pred eee
Q 021767 221 CSA 223 (308)
Q Consensus 221 ~~~ 223 (308)
..+
T Consensus 84 v~~ 86 (257)
T PF13407_consen 84 VTV 86 (257)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 228
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.78 E-value=96 Score=23.81 Aligned_cols=54 Identities=24% Similarity=0.237 Sum_probs=28.6
Q ss_pred CCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 191 GLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 191 G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
+.+-.+=++. .++.+.++++.+...|.+-.++|.. ..+.+++++|+++|+.++.
T Consensus 54 ~~iDlavv~~-~~~~~~~~v~~~~~~g~~~v~~~~g-------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 54 EPIDLAVVCV-PPDKVPEIVDEAAALGVKAVWLQPG-------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp ST-SEEEE-S--HHHHHHHHHHHHHHT-SEEEE-TT-------S--HHHHHHHHHTT-EEEE
T ss_pred CCCCEEEEEc-CHHHHHHHHHHHHHcCCCEEEEEcc-------hHHHHHHHHHHHcCCEEEe
Confidence 4444333322 4555555555555556554454444 2334899999999999985
No 229
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.74 E-value=4.2e+02 Score=24.87 Aligned_cols=80 Identities=10% Similarity=0.101 Sum_probs=53.0
Q ss_pred HHHHHHHHHHH-HcCC---ccEEEee--cCCHHHHHHHHHHHHHcCCCceeeeeccCcccCC----cch---hhHHHHHH
Q 021767 178 LALWNGLVAMY-EKGL---VRAVGVS--NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMG----ENQ---LEIKNICD 244 (308)
Q Consensus 178 ~~~~~~l~~l~-~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~----~~~---~~l~~~~~ 244 (308)
+++++++.+.. +.|+ |+++=|. |-+.++++++.+.++. .+..++=++||++... +.. ..+.+..+
T Consensus 247 ~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~ 324 (356)
T PRK14462 247 ESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNG--IKAKVNLILFNPHEGSKFERPSLEDMIKFQDYLN 324 (356)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhh--cCcEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34777776444 5555 6666554 4468888888887654 4567888999987532 222 23566677
Q ss_pred HhCCcEEEccccccc
Q 021767 245 SLGIRLISYSPLGLG 259 (308)
Q Consensus 245 ~~gi~v~a~spl~~G 259 (308)
++||.+......|..
T Consensus 325 ~~gi~vtvR~~~G~d 339 (356)
T PRK14462 325 SKGLLCTIRESKGLD 339 (356)
T ss_pred HCCCcEEEeCCCCCc
Confidence 889999887776653
No 230
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=32.35 E-value=37 Score=27.01 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.1
Q ss_pred hhHHHHHHHhCCcEEEccccc
Q 021767 237 LEIKNICDSLGIRLISYSPLG 257 (308)
Q Consensus 237 ~~l~~~~~~~gi~v~a~spl~ 257 (308)
.++++.|+++||.+++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 389999999999999998886
No 231
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.18 E-value=1.4e+02 Score=26.92 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCceeeeeccCc---------------ccCC----cchhhHHHHHHHhCCcEEEcc
Q 021767 200 NYGPNQLVKIHDYLTARGVPLCSAQVQFSL---------------LSMG----ENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 200 n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~---------------~~~~----~~~~~l~~~~~~~gi~v~a~s 254 (308)
.++.+++.++++..++.++|++++-+...- +... +...++++..+++|+.++.+.
T Consensus 21 y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 21 PYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 357788888888888899999988665321 1111 222589999999999987654
No 232
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=31.74 E-value=2e+02 Score=23.14 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=43.0
Q ss_pred CCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhC--CCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc
Q 021767 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQ--IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK 190 (308)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~ 190 (308)
.|=.+.|+-|++. ...++.|++.+.++++.+. ....|++++...... .+..++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~---~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ---PDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC---CCHHHHHHHHHHHHHH
Confidence 5777888889864 3467888888888887663 356899999977532 3344455555555443
No 233
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=31.74 E-value=4.3e+02 Score=24.66 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEec
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLH 166 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH 166 (308)
.+.+.+++.++..+ +|+.+++.+|.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 37888888887665 4889999888776
No 234
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=31.68 E-value=3.4e+02 Score=23.37 Aligned_cols=150 Identities=10% Similarity=-0.007 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+.+.+.++++.+++.|+...|+- ++.+-.++.... ..+.++++++.-=. ...+-++..+..
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii------------~~~l~p~m~~vG-~~w~~gei~vaqe~------~as~~~~~~l~~ 73 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEII------------NGPLMDGMKVVG-DLFGAGKMFLPQVL------KSARVMKAAVAY 73 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH------------HHHHHHHHHHHH-HHHccCCCcHHHHH------HHHHHHHHHHHH
Confidence 56789999999999987655533 222222222210 01233444443221 133444444444
Q ss_pred HHHhhCCC-----cccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC-ccEEEeecCCHHHHHHHHHHHHHcCCCceeee
Q 021767 151 SLARLQIE-----QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQ 224 (308)
Q Consensus 151 sL~~L~~d-----~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q 224 (308)
...++... .---+++-.+..+...+ +..=.-.-|+..|. |-++|. +.+++.+.+.... .+++++.
T Consensus 74 l~~~l~~~~~~~~~~~~vvl~t~~gd~Hdi---G~~iv~~~l~~~G~~Vi~LG~-~vp~e~~v~~~~~-----~~~~~V~ 144 (213)
T cd02069 74 LEPYMEKEKGENSSKGKIVLATVKGDVHDI---GKNLVGVILSNNGYEVIDLGV-MVPIEKILEAAKE-----HKADIIG 144 (213)
T ss_pred HHHHHhhccccCCCCCeEEEEeCCCchhHH---HHHHHHHHHHhCCCEEEECCC-CCCHHHHHHHHHH-----cCCCEEE
Confidence 42222211 11123333332222111 11122234556676 667775 3355555554432 4566666
Q ss_pred eccCcccCCcchhhHHHHHHHhCC
Q 021767 225 VQFSLLSMGENQLEIKNICDSLGI 248 (308)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~gi 248 (308)
+....-..-..-.++++.+++.+.
T Consensus 145 lS~~~~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 145 LSGLLVPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred EccchhccHHHHHHHHHHHHhcCC
Confidence 655543332333467777777765
No 235
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.53 E-value=4.4e+02 Score=24.63 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=81.4
Q ss_pred HHHHHHHhhCCC-CCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhC-CCcccEEEecCCCCC----CCC----hh
Q 021767 107 KLLGKFISEIPG-QKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQ-IEQIGIGQLHWSTAN----YAP----PQ 176 (308)
Q Consensus 107 ~~lG~~L~~~~~-~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~-~d~iDl~~lH~~~~~----~~~----~~ 176 (308)
..+-++++.... .++....+.|+| .|. .+.+++-.+.-+++|+ .+....+-||.+++. ..| ..
T Consensus 165 ~~v~~~i~~l~~~~~i~~r~itvST-~G~------~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~ 237 (345)
T PRK14457 165 DEVLAAIRCLNQDLGIGQRRITVST-VGV------PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYP 237 (345)
T ss_pred HHHHHHHHHHhcccCCccCceEEEC-CCc------hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCC
Confidence 445566655321 124444677777 321 2233333333333332 234577889987642 111 12
Q ss_pred HHHHHHHHHH-HHHcCC---ccEEEee--cCCHHHHHHHHHHHHHcCCCceeeeeccCcccCC----cch---hhHHHHH
Q 021767 177 ELALWNGLVA-MYEKGL---VRAVGVS--NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMG----ENQ---LEIKNIC 243 (308)
Q Consensus 177 ~~~~~~~l~~-l~~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~----~~~---~~l~~~~ 243 (308)
..++.+++.+ +.+.|+ |+++=|- |-+.+.++++.+.++. .+..++=++||++... +.. ..+.+..
T Consensus 238 l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~--l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L 315 (345)
T PRK14457 238 IENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRG--FQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVL 315 (345)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhc--CCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 3446666655 556664 5666454 5567888888887653 4567888999997532 222 2356677
Q ss_pred HHhCCcEEEcccccc
Q 021767 244 DSLGIRLISYSPLGL 258 (308)
Q Consensus 244 ~~~gi~v~a~spl~~ 258 (308)
+++||.+......|.
T Consensus 316 ~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 316 EQRGVAVSVRASRGL 330 (345)
T ss_pred HHCCCeEEEeCCCCC
Confidence 888999987776654
No 236
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=31.49 E-value=3.4e+02 Score=23.45 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHHhhC--------------------------CCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC
Q 021767 139 LTPGQFVNACRASLARLQ--------------------------IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL 192 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ 192 (308)
..++.+++.+.+.|+.-| ++..++++-..|..+.+|....++++.|+++-..|-
T Consensus 109 ~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~Gt 188 (223)
T COG2884 109 KPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGT 188 (223)
T ss_pred CCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCc
Confidence 477888888888888776 678888888888777777767788899999999997
Q ss_pred ccEEEeecCCHHHHHHH
Q 021767 193 VRAVGVSNYGPNQLVKI 209 (308)
Q Consensus 193 ir~iGvSn~~~~~l~~~ 209 (308)
.|=+++|+...+..+
T Consensus 189 --TVl~ATHd~~lv~~~ 203 (223)
T COG2884 189 --TVLMATHDLELVNRM 203 (223)
T ss_pred --EEEEEeccHHHHHhc
Confidence 566788887666543
No 237
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=31.48 E-value=2.3e+02 Score=23.01 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH--cCCccEEEeecCCHHHHHHHHHHHHHc
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~~~~l~~~~~~~~~~ 216 (308)
.+.+.+.+.+++.-+.++++ ++++|-. .+.++.+.+++..+ .|.|-.=|--+|+.-.+..+++.
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~-~~~~QSN---------~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~---- 91 (146)
T PRK13015 26 ETLADVEALCRAAAEALGLE-VEFRQSN---------HEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAA---- 91 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeC---------cHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHc----
Confidence 47889999999999999863 5665554 12457788877754 35555556666666666666654
Q ss_pred CCCceeeeeccCcccC
Q 021767 217 GVPLCSAQVQFSLLSM 232 (308)
Q Consensus 217 ~~~~~~~Q~~~~~~~~ 232 (308)
+..-++.++.+-.+.
T Consensus 92 -~~~P~VEVHiSNi~a 106 (146)
T PRK13015 92 -LELPVIEVHISNVHA 106 (146)
T ss_pred -CCCCEEEEEcCCccc
Confidence 455677788777653
No 238
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=31.48 E-value=1.2e+02 Score=27.86 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeec-cC-------------cc--cC--CcchhhHHHHHHHhCCcEEEc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQ-FS-------------LL--SM--GENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~-~~-------------~~--~~--~~~~~~l~~~~~~~gi~v~a~ 253 (308)
+.+.+.++++..++.++|++++.+. ++ -+ ++ -+...++++..+++|+.++.+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~ 90 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTY 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEE
Confidence 6777888888888888888888664 10 01 11 122258999999999998743
No 239
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.34 E-value=2.1e+02 Score=25.25 Aligned_cols=73 Identities=18% Similarity=0.103 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccccccc
Q 021767 181 WNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 181 ~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 259 (308)
++.+.++. .+.=-..|=|-++...+..+++. ..++++|+....+---..-..+.+.|+.+|+.++..+-+.++
T Consensus 167 ~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~-----~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 167 LAELRRLA-AGVPIALDESLRRLDDPLALAAA-----GALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHhh-cCCCeeeCCccccccCHHHHHhc-----CCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 45566665 33323455555666666666543 346777777654321112247899999999998765444433
No 240
>PLN02489 homocysteine S-methyltransferase
Probab=31.29 E-value=4.3e+02 Score=24.49 Aligned_cols=173 Identities=13% Similarity=0.065 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCC---CCCch----HHHHHHHHhhCCCC------------------CCCCCC
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGR---LNGKS----EKLLGKFISEIPGQ------------------KQVQNN 125 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~---~~g~s----E~~lG~~L~~~~~~------------------~~~R~~ 125 (308)
.++...++=+..+++|-+.+-|...-.+.. ..|.+ +++.-++++-..+. ...+.+
T Consensus 53 ~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 132 (335)
T PLN02489 53 SPHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRP 132 (335)
T ss_pred CHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCC
Confidence 446677777778899999998887655421 12322 22333332210000 011346
Q ss_pred EEEEeccCCCCC--------------CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcC
Q 021767 126 IVIATKFAAYPW--------------RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG 191 (308)
Q Consensus 126 v~i~tK~~~~~~--------------~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G 191 (308)
++|+.-+|++.. ..+.+.+++.....++.|--..+|++.+--.. . ..++..+++.+++.+
T Consensus 133 ~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~----~--l~E~~a~~~~~~~~~ 206 (335)
T PLN02489 133 ILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIP----N--KLEAQAYVELLEEEN 206 (335)
T ss_pred cEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccC----C--hHHHHHHHHHHHHcC
Confidence 888888886431 14668888888888887755669999998431 1 223455566666654
Q ss_pred --CccEEEeecC------CHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHh-CCcEEEc
Q 021767 192 --LVRAVGVSNY------GPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSL-GIRLISY 253 (308)
Q Consensus 192 --~ir~iGvSn~------~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~-gi~v~a~ 253 (308)
+--.|.++.. +...+.++++.+... ..++++-+++.- ...- ..+++..+.. .+.+++|
T Consensus 207 ~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~-~~~~~iGiNC~~--p~~~-~~~l~~l~~~~~~pl~vy 273 (335)
T PLN02489 207 IKIPAWISFNSKDGVNVVSGDSLLECASIADSC-KKVVAVGINCTP--PRFI-HGLILSIRKVTSKPIVVY 273 (335)
T ss_pred CCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhc-CCceEEEecCCC--HHHH-HHHHHHHHhhcCCcEEEE
Confidence 4444555531 123345555544322 246777777752 2111 2555555554 5666654
No 241
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=31.28 E-value=2.5e+02 Score=27.33 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHc-CC-C-ceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcc
Q 021767 182 NGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR-GV-P-LCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 182 ~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~-~~-~-~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
+-...+=+.|-+..+|....+++++++.++.++.. .- + +-+|-+ .++-+... +..+++.|.++||.++..+
T Consensus 34 eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~-e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 34 ELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPAL-EWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCccc-HHHHHHHHHHcCCCEEEec
Confidence 44556778899999999999999999888877652 22 3 544432 22212111 2378999999999987654
No 242
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=31.26 E-value=4.6e+02 Score=24.80 Aligned_cols=151 Identities=10% Similarity=0.034 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+.++..+.++..++.|++.|=.--.... -......=+++++. --+++-|..-... .++.+...+
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~----~~~di~~v~avRe~-----~G~~~~l~vDaN~---~w~~~~A~~---- 223 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAP----LDEDLRRIEAALDV-----LGDGARLAVDANG---RFDLETAIA---- 223 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCC----HHHHHHHHHHHHHh-----cCCCCeEEEECCC---CCCHHHHHH----
Confidence 3455666777788999998754211001 00112222444442 1234444433321 224443222
Q ss_pred HHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCC--Cceeeeecc
Q 021767 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGV--PLCSAQVQF 227 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~--~~~~~Q~~~ 227 (308)
.++.|. .+++.++..|- +.+ -++.+.+|++...+- ..|=|-++...+.++++. ... .++++|+..
T Consensus 224 ~~~~l~--~~~~~~iEeP~----~~~---d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~---~a~~~~~div~~d~ 291 (385)
T cd03326 224 YAKALA--PYGLRWYEEPG----DPL---DYALQAELADHYDGPIATGENLFSLQDARNLLRY---GGMRPDRDVLQFDP 291 (385)
T ss_pred HHHHhh--CcCCCEEECCC----Ccc---CHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHh---CCccccCCEEEeCc
Confidence 333342 34677777552 111 256777888776554 556777788888877653 101 137888876
Q ss_pred CcccCCcchhhHHHHHHHhCCc
Q 021767 228 SLLSMGENQLEIKNICDSLGIR 249 (308)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~gi~ 249 (308)
.-.---.+-..+.+.|+.+|+.
T Consensus 292 ~~~GGit~~~kia~lA~a~gi~ 313 (385)
T cd03326 292 GLSYGLPEYLRMLDVLEAHGWS 313 (385)
T ss_pred hhhCCHHHHHHHHHHHHHcCCC
Confidence 5432111224788999999997
No 243
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=31.17 E-value=3.5e+02 Score=24.83 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCC-CC-CChhHHHHHHHHHHHHHcCCccEEEeec--CCHHHHHHHHHHHHH
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTA-NY-APPQELALWNGLVAMYEKGLVRAVGVSN--YGPNQLVKIHDYLTA 215 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~-~~-~~~~~~~~~~~l~~l~~~G~ir~iGvSn--~~~~~l~~~~~~~~~ 215 (308)
-.+++++..+...++|+...+.+.+-...+. .+ .| .+-+.|++|.++| ++.|=|.. |..+.++-+.
T Consensus 205 Y~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P----~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~----- 274 (316)
T PF00762_consen 205 YPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGP----STEDVLEELAKEG-VKRVVVVPPGFVSDCLETLY----- 274 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSS----BHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHC-----
T ss_pred hHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccc----cHHHHHHHHHhcC-CCeEEEECCccccccHhHHH-----
Confidence 4577888888888999987777766643322 11 22 2568999999999 66665543 3444444332
Q ss_pred cCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccc
Q 021767 216 RGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPL 256 (308)
Q Consensus 216 ~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 256 (308)
.+++ +.-+.++++|+.-..+-|-
T Consensus 275 ---eidi---------------e~re~~~~~G~~~~~~ip~ 297 (316)
T PF00762_consen 275 ---EIDI---------------EYRELAEEAGGEEFVRIPC 297 (316)
T ss_dssp ---CCCC---------------HHHHHHHHHTCCEEEE---
T ss_pred ---HHHH---------------HHHHHHHHcCCceEEEeCC
Confidence 2221 6678889999965555544
No 244
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=31.16 E-value=2.5e+02 Score=22.21 Aligned_cols=63 Identities=8% Similarity=-0.069 Sum_probs=42.6
Q ss_pred CCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCC----CcccEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 021767 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI----EQIGIGQLHWSTANYAPPQELALWNGLVAMYE 189 (308)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~----d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~ 189 (308)
.|=.+.|+-|+|. ...++.+++-+.++++.+.. ...|++++-.+... ..+..++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~--~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDAL--NAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccc--cCCHHHHHHHHHHHHH
Confidence 5667888888864 34678899999999887643 55799999977432 2233445555555444
No 245
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=30.68 E-value=36 Score=18.80 Aligned_cols=14 Identities=29% Similarity=0.135 Sum_probs=8.4
Q ss_pred cccCCCCccccccc
Q 021767 3 FSSSTTPTVAYFSC 16 (308)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (308)
||+|+-++.+++.+
T Consensus 1 masstpaspapsdi 14 (29)
T PF05570_consen 1 MASSTPASPAPSDI 14 (29)
T ss_pred CCcCCCCCCCcHHH
Confidence 56666666666553
No 246
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=30.48 E-value=4.1e+02 Score=24.04 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=59.7
Q ss_pred HHhhCCCcccEEEecCCCCCCCChhHHHH--HHHHHHHHHcCCccEEEeecCCHH----HHHHHHHHHHHcCCCceeeee
Q 021767 152 LARLQIEQIGIGQLHWSTANYAPPQELAL--WNGLVAMYEKGLVRAVGVSNYGPN----QLVKIHDYLTARGVPLCSAQV 225 (308)
Q Consensus 152 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~--~~~l~~l~~~G~ir~iGvSn~~~~----~l~~~~~~~~~~~~~~~~~Q~ 225 (308)
++-++-.++|++.+..+.......+.... -+.+.++.++--=|++|+.+.++. ..+++.+..+. .-++++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~----~gf~g~ 130 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRE----LGFVGV 130 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHh----cCceEE
Confidence 67788889999988841111111111000 246778888888899999998765 33444443332 223444
Q ss_pred ccCcccCCc--ch---hhHHHHHHHhCCcEEEcccc
Q 021767 226 QFSLLSMGE--NQ---LEIKNICDSLGIRLISYSPL 256 (308)
Q Consensus 226 ~~~~~~~~~--~~---~~l~~~~~~~gi~v~a~spl 256 (308)
..++..+.. .. ..+++.|+++|+.++.....
T Consensus 131 ~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 131 KLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred EecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 444433321 11 35899999999999874444
No 247
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.43 E-value=2.8e+02 Score=22.07 Aligned_cols=95 Identities=20% Similarity=0.144 Sum_probs=48.9
Q ss_pred ccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcch-------hhHHHHHHH--hCCcEEEcccccccccCC
Q 021767 193 VRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQ-------LEIKNICDS--LGIRLISYSPLGLGMLTG 263 (308)
Q Consensus 193 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~-------~~l~~~~~~--~gi~v~a~spl~~G~L~~ 263 (308)
+...|++..+..++..-++..........++++-.|=+...... .++++.+++ .++.++..+|.-.+ .
T Consensus 24 v~n~g~~G~~~~~~~~~l~~~~~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~---~ 100 (169)
T cd01828 24 VANRGISGDTTRGLLARLDEDVALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVG---E 100 (169)
T ss_pred eEecCcccccHHHHHHHHHHHhccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcC---c
Confidence 66677777776654433332211223355555555544322111 357888888 77887766655432 0
Q ss_pred CCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 264 KYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
+. . .......+.-+.++++|+++|+..
T Consensus 101 ~~----~----------~~~~~~~~~n~~l~~~a~~~~~~~ 127 (169)
T cd01828 101 LK----S----------IPNEQIEELNRQLAQLAQQEGVTF 127 (169)
T ss_pred cC----c----------CCHHHHHHHHHHHHHHHHHCCCEE
Confidence 00 0 011222334467888888887643
No 248
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=30.39 E-value=52 Score=31.32 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHHHHcCCC-ceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEec--------cCCCCCCCCh
Q 021767 71 MDSQLQQTFNLAVENGIN-LFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATK--------FAAYPWRLTP 141 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~-~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK--------~~~~~~~~~~ 141 (308)
+.+.=.+-++.|.+.|-. ..|.+.. |+ -..+-+.+-+ ...+-|.|= ......+.+.
T Consensus 74 d~~~E~~K~~~A~~~GADtvMDLStg-gd-------l~~iR~~il~-------~~~vpvGTVPiYqa~~~~~~~~~~~t~ 138 (420)
T PF01964_consen 74 DIEEELEKLKIAEKAGADTVMDLSTG-GD-------LDEIRRAILE-------NSPVPVGTVPIYQAAIRKGGSIVDMTE 138 (420)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE---S-TT-------HHHHHHHHHH-------T-SS-EEE-HHHHHHHHTTT-GGG--H
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCC-CC-------HHHHHHHHHH-------hCCCccccchHHHHHHHhCCChhhCCH
Confidence 334445677999999976 4476643 33 3344444433 233444431 1111235688
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCce
Q 021767 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLC 221 (308)
Q Consensus 142 ~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 221 (308)
+.+.+.+|+..+ +=+|++-+|+- + ..+.++.+++++++- |+.+-....+..+... ++
T Consensus 139 d~~~~~ie~qa~----~GVDfmtiH~g------i----t~~~~~~~~~~~R~~--giVSRGGs~l~~WM~~---n~---- 195 (420)
T PF01964_consen 139 DDFFDVIEKQAK----DGVDFMTIHCG------I----TRETLERLKKSGRIM--GIVSRGGSILAAWMLH---NG---- 195 (420)
T ss_dssp HHHHHHHHHHHH----HT--EEEE-TT------------GGGGGGGT--TSSS------HHHHHHHHHHHH---HT----
T ss_pred HHHHHHHHHHHH----cCCCEEEEccc------h----hHHHHHHHhhhcccc--CccccchHHHHHHHHh---cC----
Confidence 889888888776 34788999953 1 346778888888754 6655555554444322 11
Q ss_pred eeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 222 SAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 222 ~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
.=||+...+ +++++.|+++++.+.-
T Consensus 196 ----~ENPly~~f--D~lLeI~k~yDVtLSL 220 (420)
T PF01964_consen 196 ----KENPLYEHF--DRLLEIAKEYDVTLSL 220 (420)
T ss_dssp ----S--HHHHTH--HHHHHHHTTTT-EEEE
T ss_pred ----CcCcHHHhH--HHHHHHHHHhCeeEec
Confidence 123333222 2899999999999853
No 249
>PF13289 SIR2_2: SIR2-like domain
Probab=30.36 E-value=1.9e+02 Score=22.30 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCC--ceeeeeccCcccCCcchhhHHHHHHHhCCcEE
Q 021767 179 ALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVP--LCSAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 179 ~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~--~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
.+++.+..+.....+-.||.|--+. .+..++..+...... ....-+. ........-.+.++.||.+|
T Consensus 75 ~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 75 WFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGKSRPRHYIVI-----PDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccCCCccEEEEE-----cCCchHHHHHHHHHcCCEEC
Confidence 4677888888888999999995444 555555444322211 1111111 11222367788899998874
No 250
>PRK06256 biotin synthase; Validated
Probab=30.34 E-value=3.9e+02 Score=24.44 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=67.0
Q ss_pred CCcHHHHHHHHHHHHHcCCCce-eCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHH
Q 021767 69 ESMDSQLQQTFNLAVENGINLF-DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNA 147 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~-DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~ 147 (308)
..+.++..+.++.+.+.|++.| -.+..++. ....-+.+-+.++... .+-.+-+.+-.+. .+.+
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p---~~~~~~~~~e~i~~i~----~~~~i~~~~~~g~----l~~e----- 153 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGP---SGKEVDQVVEAVKAIK----EETDLEICACLGL----LTEE----- 153 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCC---CchHHHHHHHHHHHHH----hcCCCcEEecCCc----CCHH-----
Confidence 4577889999999999998633 22333332 0111123444554421 1122333333321 2333
Q ss_pred HHHHHHhhCCCcccEEEecCCCCC-----CCChhHHHHHHHHHHHHHcCCccE----EEeecCCHHHHHHHHHHHHHcC
Q 021767 148 CRASLARLQIEQIGIGQLHWSTAN-----YAPPQELALWNGLVAMYEKGLVRA----VGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 148 ~e~sL~~L~~d~iDl~~lH~~~~~-----~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
.-+.|++.|++.+-+- +.. ++. ......++.+++++.+++.|.--. +|+ +-+.+++.+.+..++..+
T Consensus 154 ~l~~LkeaG~~~v~~~-lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~ 229 (336)
T PRK06256 154 QAERLKEAGVDRYNHN-LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELD 229 (336)
T ss_pred HHHHHHHhCCCEEecC-Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCC
Confidence 3344777787654331 111 100 011234567899999999996222 244 556777777777666443
No 251
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.09 E-value=1.7e+02 Score=26.65 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccCccc------C----CcchhhHHHHHHHhCCcEEEc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFSLLS------M----GENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~------~----~~~~~~l~~~~~~~gi~v~a~ 253 (308)
+.+++.++++.+++.++|++++++...... . -+...++++..+++|+.++.+
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~ 89 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLW 89 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEE
Confidence 444455555545555555555544321111 0 011236777777777776543
No 252
>PRK15108 biotin synthase; Provisional
Probab=30.09 E-value=3.9e+02 Score=24.86 Aligned_cols=66 Identities=11% Similarity=0.116 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeec--CCHHHHHHHH
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN--YGPNQLVKIH 210 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn--~~~~~l~~~~ 210 (308)
.+++.|.+.+.. ...+|+..+-+ ...+.+. .....+.+.+.++.+++.|. .+.+|+ .+.+.+.++.
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p--~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~Lk 143 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNP--HERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLA 143 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCC--CcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHH
Confidence 366777766654 44577777632 2222111 11122335566666666653 344554 3445555443
No 253
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=30.03 E-value=2e+02 Score=23.20 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=53.4
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH--cCCccEEEeecCCHHHHHHHHHHHHHc
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~~~~l~~~~~~~~~~ 216 (308)
.+.+.+.+.+++.-+.+|+ .++++|-. .+.++.+.+++..+ +|.|-.=|--+|+.-.+..++..
T Consensus 24 ~tl~~i~~~l~~~a~~~g~-~v~~~QSN---------~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~---- 89 (140)
T cd00466 24 TTLADIEALLRELAAELGV-EVEFFQSN---------HEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAA---- 89 (140)
T ss_pred CCHHHHHHHHHHHHHHcCC-EEEEEeeC---------cHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHc----
Confidence 4789999999999898987 36766654 12457788877754 34555456556666666666654
Q ss_pred CCCceeeeeccCcccC
Q 021767 217 GVPLCSAQVQFSLLSM 232 (308)
Q Consensus 217 ~~~~~~~Q~~~~~~~~ 232 (308)
+...++.++.+-.+.
T Consensus 90 -~~~P~VEVHiSNi~a 104 (140)
T cd00466 90 -VSIPVIEVHISNIHA 104 (140)
T ss_pred -CCCCEEEEecCCccc
Confidence 455677888877643
No 254
>PRK04527 argininosuccinate synthase; Provisional
Probab=29.96 E-value=4.5e+02 Score=25.18 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHhCCC
Q 021767 286 LKPLLRSLKEIAERRGKT 303 (308)
Q Consensus 286 ~~~~~~~l~~ia~~~g~s 303 (308)
..+++..|.+|+.+||+=
T Consensus 237 ~~~li~~lN~i~g~~GvG 254 (400)
T PRK04527 237 GAQILAKLNKLFAQYGVG 254 (400)
T ss_pred HHHHHHHHHHHHhhcccC
Confidence 568899999999999874
No 255
>PRK06424 transcription factor; Provisional
Probab=29.87 E-value=56 Score=26.47 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=16.6
Q ss_pred hHHHHHHHhCCcEEEc---cccc
Q 021767 238 EIKNICDSLGIRLISY---SPLG 257 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~---spl~ 257 (308)
++-+.|.+.|..+..+ +|..
T Consensus 24 ~vC~~Ca~~G~~v~~~~~~~~~~ 46 (144)
T PRK06424 24 NVCDDCAKFGTPVIEHNKFKEVK 46 (144)
T ss_pred ehhHHHHHcCCcccccCCCCccc
Confidence 7888999999999888 5553
No 256
>PRK01060 endonuclease IV; Provisional
Probab=29.64 E-value=2.6e+02 Score=24.61 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=29.9
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccC-cccCC--c----chhhHHHHHHHhCCcE
Q 021767 195 AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFS-LLSMG--E----NQLEIKNICDSLGIRL 250 (308)
Q Consensus 195 ~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~-~~~~~--~----~~~~l~~~~~~~gi~v 250 (308)
.+|+-+.....++++++.+...| ++.+|+... +.... . .-.++-+.++++|+.+
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~~~G--~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAAEIG--ANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred eEEEeeecCCCHHHHHHHHHHcC--CCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 46665544444677777666555 566666432 11110 1 1124777888999884
No 257
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=29.58 E-value=2.8e+02 Score=24.77 Aligned_cols=16 Identities=6% Similarity=-0.004 Sum_probs=11.4
Q ss_pred HHHHHHhhCCCcccEE
Q 021767 148 CRASLARLQIEQIGIG 163 (308)
Q Consensus 148 ~e~sL~~L~~d~iDl~ 163 (308)
+-..|.++|+++|++-
T Consensus 26 ia~~L~~~Gv~~iE~G 41 (275)
T cd07937 26 IAEALDEAGFFSLEVW 41 (275)
T ss_pred HHHHHHHcCCCEEEcc
Confidence 4667777787777775
No 258
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=29.53 E-value=1.6e+02 Score=27.09 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccCccc--------CC----cchhhHHHHHHHhCCcEEEcc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFSLLS--------MG----ENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~--------~~----~~~~~l~~~~~~~gi~v~a~s 254 (308)
+.+++.++++..++.++|++++.+.+.... .. +...++++.++++|+.++.+.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 667777777777778888888877642211 11 122589999999999987653
No 259
>PRK00077 eno enolase; Provisional
Probab=29.49 E-value=5.2e+02 Score=24.85 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcC--CccEEEee--cCCHHHHHHHHHHHHH
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG--LVRAVGVS--NYGPNQLVKIHDYLTA 215 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS--n~~~~~l~~~~~~~~~ 215 (308)
+++...+.+.+.+++ .+++++..|-. + + -|+.+.+|.++- ++.-+|== ..+++.+.++++.
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~---~-~---D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~--- 326 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLD---E-N---DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEK--- 326 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCC---C-c---cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHh---
Confidence 444555555544444 46777875421 1 1 256777777764 55544422 2358888877653
Q ss_pred cCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 216 RGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 216 ~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
-..+++|+..+-+-.-.+-.++..+|+.+|+.++.
T Consensus 327 --~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 327 --GAANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred --CCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 34677887766542212234789999999998664
No 260
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.45 E-value=1.6e+02 Score=27.36 Aligned_cols=52 Identities=12% Similarity=0.270 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeec---------------c-----------Cccc-----CCcchhhHHHHHHHhCCcE
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQ---------------F-----------SLLS-----MGENQLEIKNICDSLGIRL 250 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~---------------~-----------~~~~-----~~~~~~~l~~~~~~~gi~v 250 (308)
+.+++.++++..++.++|++++.+. | +... +-+...++++..+++|+.+
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv 101 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKV 101 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEE
Confidence 5666777777777777888876553 1 1111 1112358999999999999
Q ss_pred EEc
Q 021767 251 ISY 253 (308)
Q Consensus 251 ~a~ 253 (308)
+.|
T Consensus 102 ~l~ 104 (340)
T cd06597 102 LLW 104 (340)
T ss_pred EEE
Confidence 753
No 261
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=29.44 E-value=2e+02 Score=25.15 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccc
Q 021767 201 YGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGL 258 (308)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 258 (308)
.++.++.++.+.++..+++..+.....+. .-+-..+++.|+.++.-.||+.
T Consensus 183 ps~~~l~~l~~~ik~~~v~~i~~e~~~~~-------~~~~~la~~~g~~vv~ld~l~~ 233 (256)
T PF01297_consen 183 PSPKDLAELIKLIKENKVKCIFTEPQFSS-------KLAEALAKETGVKVVYLDPLGG 233 (256)
T ss_dssp S-HHHHHHHHHHHHHTT-SEEEEETTS-T-------HHHHHHHHCCT-EEEESSTTCS
T ss_pred CCHHHHHHHHHHhhhcCCcEEEecCCCCh-------HHHHHHHHHcCCcEEEeCCCcC
Confidence 36888999999888888776655444332 1334447888999998888843
No 262
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=29.22 E-value=4.3e+02 Score=23.85 Aligned_cols=144 Identities=11% Similarity=0.125 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH-HH
Q 021767 74 QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA-SL 152 (308)
Q Consensus 74 ~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~-sL 152 (308)
-..++-....++|+|..|.....-. ..+.++...-+.......+.+.+++.++. .-
T Consensus 13 IVA~Vt~~La~~g~NI~d~sq~~~~-----------------------~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~ 69 (280)
T TIGR00655 13 LVAAISTFIAKHGANIISNDQHTDP-----------------------ETGRFFMRVEFQLEGFRLEESSLLAAFKSALA 69 (280)
T ss_pred hHHHHHHHHHHCCCCEEeeeEEEcC-----------------------CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3556667777999999997765432 12344444444322213477888888888 77
Q ss_pred HhhCCCcccEEEecCCCCCCCCh-----hHHHHHHHHHHHHHcCCc--cEE-EeecCCHHHHHHHHHHHHHcCCCceeee
Q 021767 153 ARLQIEQIGIGQLHWSTANYAPP-----QELALWNGLVAMYEKGLV--RAV-GVSNYGPNQLVKIHDYLTARGVPLCSAQ 224 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~~~~~-----~~~~~~~~l~~l~~~G~i--r~i-GvSn~~~~~l~~~~~~~~~~~~~~~~~Q 224 (308)
+.++.+ +.+|..+... .+ ....-+++|-+..++|.+ .=. =+||+... .. .++..|+|.....
T Consensus 70 ~~~~l~----i~l~~~~~~~-ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~~--~~---~A~~~gIp~~~~~ 139 (280)
T TIGR00655 70 EKFEMT----WELILADKLK-RVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDL--RS---LVERFGIPFHYIP 139 (280)
T ss_pred HHhCCE----EEEecCCCCc-EEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChhH--HH---HHHHhCCCEEEcC
Confidence 888864 4566442210 00 011246777777777864 222 35676422 22 2555667654333
Q ss_pred eccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 225 VQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
.+..++...+..+++..++.++.++.
T Consensus 140 --~~~~~~~~~e~~~~~~l~~~~~Dliv 165 (280)
T TIGR00655 140 --ATKDNRVEHEKRQLELLKQYQVDLVV 165 (280)
T ss_pred --CCCcchhhhHHHHHHHHHHhCCCEEE
Confidence 22223333334788999999888764
No 263
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=29.19 E-value=2.7e+02 Score=21.55 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=42.9
Q ss_pred CCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCC---CcccEEEecCCCCCCCChhHHHHHHHHHHHHHc
Q 021767 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI---EQIGIGQLHWSTANYAPPQELALWNGLVAMYEK 190 (308)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~---d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~ 190 (308)
.|=.+.|+-|++.. ...++.+++.+.+.++.+.. ...|++++-.+... ..+..++.+.|..|.+.
T Consensus 47 ~R~G~~VsKK~~~~--AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~--~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKK--AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAA--ECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccc--hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcc--cCCHHHHHHHHHHHHHH
Confidence 56667777786532 23678888888888876642 35799999877433 23444567777665554
No 264
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=29.17 E-value=4.3e+02 Score=23.96 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=40.4
Q ss_pred CcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHH
Q 021767 158 EQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIH 210 (308)
Q Consensus 158 d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 210 (308)
...++++|..|....++.....+|+.+.+++++|+ .|=+++|..+.++++.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~--till~sH~l~e~~~~~ 205 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK--TILLTTHFMEEAERLC 205 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC--EEEEECCCHHHHHHhC
Confidence 35689999988776677766789999999988885 5778899988777653
No 265
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=28.97 E-value=4.8e+02 Score=24.31 Aligned_cols=154 Identities=9% Similarity=-0.012 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+.++..+.++.+.+.|++.|=.- .++. ... .-....=+++++. --+++.|.--.. ..++.+...+ +-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~-~~~-~~di~~i~~vR~~-----~G~~~~l~vDan---~~~~~~~A~~-~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGP-GVV-RRDLKACLAVREA-----VGPDMRLMHDGA---HWYSRADALR-LGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCc-hhH-HHHHHHHHHHHHH-----hCCCCeEEEECC---CCcCHHHHHH-HHH
Confidence 45667788888899999988652 2221 000 0011222344442 123444443332 1234443322 222
Q ss_pred HHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc-EEEeecCC-HHHHHHHHHHHHHcCCCceeeeeccC
Q 021767 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYG-PNQLVKIHDYLTARGVPLCSAQVQFS 228 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~-~~~l~~~~~~~~~~~~~~~~~Q~~~~ 228 (308)
.|+.+ ++.++..| +... -++.+.+|+++-.+. ..|=+-++ ..++.++++. -.++++|+..+
T Consensus 211 ~l~~~-----~l~~iEeP------~~~~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~-----~a~d~v~~d~~ 273 (368)
T cd03329 211 ALEEL-----GFFWYEDP------LREA-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLA-----GATDFLRADVN 273 (368)
T ss_pred Hhhhc-----CCCeEeCC------CCch-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh-----CCCCEEecCcc
Confidence 33333 45555533 2111 247777888876554 12334456 7777776654 24788888766
Q ss_pred cccCCcchhhHHHHHHHhCCcEEEc
Q 021767 229 LLSMGENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (308)
.+--=..-.++...|+++||.++..
T Consensus 274 ~~GGit~~~~ia~~a~~~gi~~~~h 298 (368)
T cd03329 274 LVGGITGAMKTAHLAEAFGLDVELH 298 (368)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5421122247899999999999754
No 266
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=28.80 E-value=3.9e+02 Score=27.65 Aligned_cols=146 Identities=18% Similarity=0.189 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHH
Q 021767 73 SQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASL 152 (308)
Q Consensus 73 ~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL 152 (308)
|-+.++.+.|-|.|++.+ .+|.. |..+ .--+ .+-|+-|+..|.-++ -..--.+++..
T Consensus 43 EIaIRvFRa~tEL~~~tv---AiYse-------qD~~-sMHR------qKADEaY~iGk~l~P------V~AYL~ideii 99 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTV---AIYSE-------QDRL-SMHR------QKADEAYLIGKGLPP------VGAYLAIDEII 99 (1176)
T ss_pred cchhHHHHHHhhhcceEE---EEEec-------cchh-hhhh------hccccceecccCCCc------hhhhhhHHHHH
Confidence 668899999999999976 47774 3322 2222 256888999998432 12222233333
Q ss_pred HhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHH------HHHHcCCCceeeeec
Q 021767 153 ARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHD------YLTARGVPLCSAQVQ 226 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~------~~~~~~~~~~~~Q~~ 226 (308)
+--+-..+|. +| | .+..+.+. -+.-+...++| |++||= +++-++.+-+ .+-..|+|. +
T Consensus 100 ~iak~~~vda--vH-P--GYGFLSEr--sdFA~av~~AG-i~fiGP---speVi~~mGDKv~AR~~Ai~agVpv--V--- 163 (1176)
T KOG0369|consen 100 SIAKKHNVDA--VH-P--GYGFLSER--SDFAQAVQDAG-IRFIGP---SPEVIDSMGDKVAARAIAIEAGVPV--V--- 163 (1176)
T ss_pred HHHHHcCCCe--ec-C--Cccccccc--hHHHHHHHhcC-ceEeCC---CHHHHHHhhhHHHHHHHHHHcCCCc--c---
Confidence 3333334554 45 3 22222221 13334455555 799998 4555543322 222344432 1
Q ss_pred cCcccCCc--chhhHHHHHHHhCCcEEEccccccc
Q 021767 227 FSLLSMGE--NQLEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 227 ~~~~~~~~--~~~~l~~~~~~~gi~v~a~spl~~G 259 (308)
|-...+ .-++.+++|+++|..+|.-..+++|
T Consensus 164 --PGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 164 --PGTPGPITTVEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred --CCCCCCcccHHHHHHHHHhcCCcEEEeecccCC
Confidence 111111 1138899999999999988888877
No 267
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=28.65 E-value=4.1e+02 Score=23.43 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=20.6
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCC
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTA 93 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA 93 (308)
.+.++..++++...+.||..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 356788899999999999999987
No 268
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=28.52 E-value=2.1e+02 Score=23.59 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+++...-.+++|-+.||.+|=.|..||. +-..+-+.+.. . =++++.|.-.... .-+...+.+.+++
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~------tA~k~lemveg------~-lkvVvVthh~Gf~-e~g~~e~~~E~~~ 77 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY------TALKALEMVEG------D-LKVVVVTHHAGFE-EKGTQEMDEEVRK 77 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH------HHHHHHHhccc------C-ceEEEEEeecccc-cCCceecCHHHHH
Confidence 4455666678888899999999999996 22222222221 1 2366665543221 1244566778888
Q ss_pred HHHhhCCC
Q 021767 151 SLARLQIE 158 (308)
Q Consensus 151 sL~~L~~d 158 (308)
-|+..|.+
T Consensus 78 ~L~erGa~ 85 (186)
T COG1751 78 ELKERGAK 85 (186)
T ss_pred HHHHcCce
Confidence 89899864
No 269
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.43 E-value=4.4e+02 Score=24.89 Aligned_cols=80 Identities=10% Similarity=0.095 Sum_probs=53.7
Q ss_pred HHHHHHHHHH-HHHcC---CccEEEee--cCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcc-------hhhHHHHH
Q 021767 177 ELALWNGLVA-MYEKG---LVRAVGVS--NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGEN-------QLEIKNIC 243 (308)
Q Consensus 177 ~~~~~~~l~~-l~~~G---~ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~-------~~~l~~~~ 243 (308)
..++++++.+ +.+.| +|+++=+. |.+.+++.++.++++. .+..++-++||++..... -..+.+..
T Consensus 261 l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~--~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L 338 (368)
T PRK14456 261 LDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASR--FFCKINLIDYNSIVNIKFEPVCSSTRERFRDRL 338 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhc--CCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHH
Confidence 3567888875 55556 24455444 4567778888887753 346778889998764321 13567788
Q ss_pred HHhCCcEEEcccccc
Q 021767 244 DSLGIRLISYSPLGL 258 (308)
Q Consensus 244 ~~~gi~v~a~spl~~ 258 (308)
+++|+.+......|.
T Consensus 339 ~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 339 LDAGLQVTVRKSYGT 353 (368)
T ss_pred HHCCCcEEeeCCCCc
Confidence 899999998777665
No 270
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=28.37 E-value=2.2e+02 Score=21.26 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEc
Q 021767 180 LWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 180 ~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (308)
+-.+|+..++.|++. +|. .+..+. .+.......++-...+. .....+..+|++++|.++.|
T Consensus 4 ~~~~l~~a~ragkl~-~G~-----~~v~ka---i~~gkaklViiA~D~~~----~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 4 FNRELRVAVDTGKVI-LGS-----KRTIKA---IKLGKAKLVIVASNCPK----DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHHcCCEE-EcH-----HHHHHH---HHcCCceEEEEeCCCCH----HHHHHHHHHHHHcCCCEEEE
Confidence 456788888888865 343 333333 22233445555444332 12247888999999998765
No 271
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.36 E-value=3.2e+02 Score=23.70 Aligned_cols=72 Identities=10% Similarity=0.072 Sum_probs=41.1
Q ss_pred HHHHHHcCCccEEEeecCCHHHHHHHHHHHHHc--C----------------------CCceeeeeccCcccCCcchhhH
Q 021767 184 LVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR--G----------------------VPLCSAQVQFSLLSMGENQLEI 239 (308)
Q Consensus 184 l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~--~----------------------~~~~~~Q~~~~~~~~~~~~~~l 239 (308)
++.+++.|.-+.+=+++|+.+.+.++.+..... + ..+..+.++++.........++
T Consensus 125 ~~~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (249)
T cd08561 125 ADLIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAFVLASRLGLGSLYSPPYDALQIPVRYGGVPLVTPRF 204 (249)
T ss_pred HHHHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHHHHHhhcccccccCCCCcEEEcCcccCCeecCCHHH
Confidence 344445566677888889888888776542100 0 0011222222211111223489
Q ss_pred HHHHHHhCCcEEEccc
Q 021767 240 KNICDSLGIRLISYSP 255 (308)
Q Consensus 240 ~~~~~~~gi~v~a~sp 255 (308)
+..++++|+.+.+|..
T Consensus 205 v~~~~~~G~~v~vWTV 220 (249)
T cd08561 205 VRAAHAAGLEVHVWTV 220 (249)
T ss_pred HHHHHHCCCEEEEEec
Confidence 9999999999999874
No 272
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=28.36 E-value=4.7e+02 Score=24.06 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=59.2
Q ss_pred HHhhCCCcccEEEecCCCCC--CCChhHHHHHHHHHHHHHcCCccE-EEeecCC---HHHHHHHHHHHHHcCCCceeeee
Q 021767 152 LARLQIEQIGIGQLHWSTAN--YAPPQELALWNGLVAMYEKGLVRA-VGVSNYG---PNQLVKIHDYLTARGVPLCSAQV 225 (308)
Q Consensus 152 L~~L~~d~iDl~~lH~~~~~--~~~~~~~~~~~~l~~l~~~G~ir~-iGvSn~~---~~~l~~~~~~~~~~~~~~~~~Q~ 225 (308)
.++.| .|++.+|-...+ ...-...++.+.|+++.++=++-- ||=|.-. ++-++++.+.|. |..+.....
T Consensus 160 Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaE--GeRclLaSa 234 (403)
T COG2069 160 VKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAE--GERCLLASA 234 (403)
T ss_pred HHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhc--CceEEeecc
Confidence 34666 477777754221 111123458899999999887654 5777653 555666665543 333333333
Q ss_pred ccCcccCCcchhhHHHHHHHhCCcEEEcccccc
Q 021767 226 QFSLLSMGENQLEIKNICDSLGIRLISYSPLGL 258 (308)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 258 (308)
+.++ ... .+.+.+.++|=.|++|+++.-
T Consensus 235 nldl---Dy~--~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 235 NLDL---DYE--RIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cccc---CHH--HHHHHHHhcCceEEEeeccCh
Confidence 3322 222 789999999999999998764
No 273
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=28.32 E-value=2.1e+02 Score=24.27 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHH
Q 021767 179 ALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDY 212 (308)
Q Consensus 179 ~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 212 (308)
++.+.|+.|+++|.--.| +||.....++..++.
T Consensus 96 g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~ 128 (222)
T PRK10826 96 GVREALALCKAQGLKIGL-ASASPLHMLEAVLTM 128 (222)
T ss_pred CHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHh
Confidence 377889999999864444 777666666665554
No 274
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=28.31 E-value=4.5e+02 Score=23.80 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH--cCCccE-EEeecCCHHHHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLVRA-VGVSNYGPNQLVKIHDYLT 214 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~-iGvSn~~~~~l~~~~~~~~ 214 (308)
..+.+.+++-++..+. -| +|=+++-.-..+...+..++-.+.++...+ .|++-- +|++. +..+..++.+.+.
T Consensus 24 ~iD~~~l~~li~~l~~-~G---v~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~ 98 (303)
T PRK03620 24 SFDEAAYREHLEWLAP-YG---AAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAE 98 (303)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHH
Confidence 4688888888886665 34 455555433323333333333333333333 455443 48875 7766666667777
Q ss_pred HcCCCceeeeeccCcccCCcchhhHHH----HHHHhCCcEEEcc
Q 021767 215 ARGVPLCSAQVQFSLLSMGENQLEIKN----ICDSLGIRLISYS 254 (308)
Q Consensus 215 ~~~~~~~~~Q~~~~~~~~~~~~~~l~~----~~~~~gi~v~a~s 254 (308)
..|..-.++..+|-. ...+.++++ .|...++.++.|.
T Consensus 99 ~~Gadav~~~pP~y~---~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 99 RAGADGILLLPPYLT---EAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred HhCCCEEEECCCCCC---CCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 777654444444422 122335544 4455689999887
No 275
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=28.26 E-value=5.2e+02 Score=24.50 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=65.2
Q ss_pred HHHHHHHHcCCCceeCCcCCCCCC-----CCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHH
Q 021767 77 QTFNLAVENGINLFDTADSYGTGR-----LNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRAS 151 (308)
Q Consensus 77 ~~l~~A~e~Gi~~~DtA~~Yg~~~-----~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~s 151 (308)
+.++...+.|+|.+-..---.+.. .-+.+.+.+-++++...+.++.. +-+--=+|.+ +-+.+.+++.++..
T Consensus 116 e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~--v~~dlI~GlP--gqt~e~~~~tl~~~ 191 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIEN--FSLDLISGLP--HQTLEDWQASLEAA 191 (400)
T ss_pred HHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCe--EEEEeecCCC--CCCHHHHHHHHHHH
Confidence 456666778999886555444310 11333334444444321111211 2121122222 23888888888877
Q ss_pred HHhhCCCcccEEEecC-CCC---------CCCChhHH---HHH-HHHHHHHHcCCccEEEeecCCH
Q 021767 152 LARLQIEQIGIGQLHW-STA---------NYAPPQEL---ALW-NGLVAMYEKGLVRAVGVSNYGP 203 (308)
Q Consensus 152 L~~L~~d~iDl~~lH~-~~~---------~~~~~~~~---~~~-~~l~~l~~~G~ir~iGvSn~~~ 203 (308)
++ |+.++|.+|.+.- |.. .....+++ +.+ .+.+.|.+.|.. .+++|||.-
T Consensus 192 ~~-l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 192 IA-LNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred Hc-CCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 64 8999999988862 210 00011111 222 366778888875 589999974
No 276
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=28.10 E-value=1.4e+02 Score=29.86 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccccccc
Q 021767 204 NQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 259 (308)
..|++.++.++..++|+.|.=+.| ..|...+-..+.++|+++|+.++....++.|
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKF-d~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKF-VTDTDAEIAALKELCEELGVEVALSEVWAKG 413 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC-CCCCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 446667777777887755543333 2343334446889999999999866666554
No 277
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=28.09 E-value=3.4e+02 Score=28.70 Aligned_cols=97 Identities=10% Similarity=0.057 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc--CCccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GLVRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
..+.||+-.++....--....-+|+|+..+ -+. .+.+++|.+..++ ..+..|-+++.....+..+...
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad----~lt-~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR----- 170 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAH----MVT-PQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR----- 170 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechh----hcC-HHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh-----
Confidence 567777654443322223455788888542 222 3467888888888 8899999986443322222221
Q ss_pred CCceeeeeccCcccCCcchhhHHHHHHHhCCcE
Q 021767 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIRL 250 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v 250 (308)
+..++|..+.......-|...|++.||.+
T Consensus 171 ----c~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 171 ----THHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred ----eeEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 23445555533222224556677778754
No 278
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=27.88 E-value=6.1e+02 Score=25.13 Aligned_cols=130 Identities=16% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC----------ccEEEeecCCHHHHHHHHHHHH
Q 021767 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL----------VRAVGVSNYGPNQLVKIHDYLT 214 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~----------ir~iGvSn~~~~~l~~~~~~~~ 214 (308)
+..+-+.|.++|+|+|.+-+ |....+-+++++.+.+.++ .+-.+++....+.++.+.+...
T Consensus 108 Ki~Ia~~L~~~GVd~IEvG~---------Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~ 178 (503)
T PLN03228 108 KLEIARQLAKLRVDIMEVGF---------PGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALK 178 (503)
T ss_pred HHHHHHHHHHcCCCEEEEeC---------CCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhc
Q ss_pred HcCCCceeeeeccCcccCCcc------------hhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhcc
Q 021767 215 ARGVPLCSAQVQFSLLSMGEN------------QLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQI 282 (308)
Q Consensus 215 ~~~~~~~~~Q~~~~~~~~~~~------------~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 282 (308)
..+.+-..+-+..+.++.... . +.+++++++|...+.+++=-.+
T Consensus 179 ~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~-~~V~~Ak~~G~~~v~f~~EDa~----------------------- 234 (503)
T PLN03228 179 YAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAV-SSIRYAKSLGFHDIQFGCEDGG----------------------- 234 (503)
T ss_pred ccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHH-HHHHHHHHcCCceEEecccccc-----------------------
Q ss_pred ccChHHHHHHHHHHHHHhCCCcccCC
Q 021767 283 LPGLKPLLRSLKEIAERRGKTIPQLL 308 (308)
Q Consensus 283 ~~~~~~~~~~l~~ia~~~g~s~aqva 308 (308)
....+.+..+.+.+.+.|...--++
T Consensus 235 -Rtd~efl~~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 235 -RSDKEFLCKILGEAIKAGATSVGIA 259 (503)
T ss_pred -ccCHHHHHHHHHHHHhcCCCEEEEe
No 279
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=27.88 E-value=4.5e+02 Score=23.60 Aligned_cols=107 Identities=13% Similarity=0.055 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHHHHHhh------CCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARL------QIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHD 211 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L------~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~ 211 (308)
.++.+.-.+-.+-..+-+ ++++|-|=.+..+ .+-.-+..+++++-+.|.++|-+- +=-+|-++-..+++.+
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~--~~LlPD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a~rLed 156 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDP--KYLLPDPIGTLKAAEFLVKKGFTV-LPYINADPMLAKHLED 156 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCC--cccCCChHHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHH
Confidence 446665555555455544 5666666555432 222224457899999999999653 2222333433333333
Q ss_pred HHHHcCCCceeeeeccCcccCC--cchhhHHHHHHH-hCCcEEEc
Q 021767 212 YLTARGVPLCSAQVQFSLLSMG--ENQLEIKNICDS-LGIRLISY 253 (308)
Q Consensus 212 ~~~~~~~~~~~~Q~~~~~~~~~--~~~~~l~~~~~~-~gi~v~a~ 253 (308)
.-..+++.--+|+-.. ......++...+ .+|.|+.-
T Consensus 157 ------~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivd 195 (267)
T CHL00162 157 ------IGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIID 195 (267)
T ss_pred ------cCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEe
Confidence 2356666655554322 222234444444 56777763
No 280
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=27.59 E-value=5.5e+02 Score=24.52 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=48.9
Q ss_pred ccEEEecCCCCCCCChhHHHHHHHHHHHHHcC--CccEEE-e-ecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcc
Q 021767 160 IGIGQLHWSTANYAPPQELALWNGLVAMYEKG--LVRAVG-V-SNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGEN 235 (308)
Q Consensus 160 iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G--~ir~iG-v-Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~ 235 (308)
.+++++-.|-.. +. |+.+.+|.+.- .+.-+| = ..+++..+.++++. ...+++|+..+-+-.-.+
T Consensus 277 ~~i~~iEdPl~~----~D---~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~-----~a~d~v~ik~~~iGGite 344 (408)
T cd03313 277 YPIVSIEDPFDE----DD---WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEK-----KAANALLIKVNQIGTLTE 344 (408)
T ss_pred CCcEEEEeCCCC----cC---HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHH
Confidence 457777755211 11 56666777663 444333 2 23468888877654 246777777665422122
Q ss_pred hhhHHHHHHHhCCcEEE
Q 021767 236 QLEIKNICDSLGIRLIS 252 (308)
Q Consensus 236 ~~~l~~~~~~~gi~v~a 252 (308)
-.++...|+++|+.++.
T Consensus 345 ~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 345 TIEAIKLAKKNGYGVVV 361 (408)
T ss_pred HHHHHHHHHHcCCeEEc
Confidence 34788999999999864
No 281
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.55 E-value=5.9e+02 Score=24.92 Aligned_cols=109 Identities=9% Similarity=0.031 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcC-CccEEEeecC-C-HHHHHHHHHHHHHc
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG-LVRAVGVSNY-G-PNQLVKIHDYLTAR 216 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~-~-~~~l~~~~~~~~~~ 216 (308)
+++.+.+.++...++.|+.++ .+. |++.. .....+.+.++++++.| .--.++++.- + ...-+++++.++..
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~---~~~--Dd~f~-~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~a 296 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFF---ILA--DEEPT-INRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRA 296 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEE---EEE--ecccc-cCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHh
Confidence 888899999988888886543 333 22221 12234566777888887 3233444321 1 10002333334444
Q ss_pred CCCceeeeec--------cCcccCCc---chhhHHHHHHHhCCcEEEcccc
Q 021767 217 GVPLCSAQVQ--------FSLLSMGE---NQLEIKNICDSLGIRLISYSPL 256 (308)
Q Consensus 217 ~~~~~~~Q~~--------~~~~~~~~---~~~~l~~~~~~~gi~v~a~spl 256 (308)
|.. .+++- +..+++.. ...+.++.|+++||.+.+.--+
T Consensus 297 G~~--~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 297 GLV--HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred CCc--EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 532 22221 11222211 1136788999999987654333
No 282
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=27.49 E-value=1.2e+02 Score=27.16 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEecc-CCCCCCCChHHHHHHH
Q 021767 73 SQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKF-AAYPWRLTPGQFVNAC 148 (308)
Q Consensus 73 ~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~-~~~~~~~~~~~i~~~~ 148 (308)
..+.=+-+...+.|+.+.-..-. |+.+..|-++|+... .|.+++|+|-. |+++.+.+.+.+-+++
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~V-------gD~~~~I~~~l~~a~----~r~D~vI~tGGLGPT~DDiT~e~vAka~ 86 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTV-------GDNPDRIVEALREAS----ERADVVITTGGLGPTHDDLTAEAVAKAL 86 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEec-------CCCHHHHHHHHHHHH----hCCCEEEECCCcCCCccHhHHHHHHHHh
Confidence 45666778888999998766655 335999999998753 57888887764 6666665555554443
No 283
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=27.38 E-value=4.4e+02 Score=23.36 Aligned_cols=108 Identities=11% Similarity=0.100 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
..+.+.-.+..+-..+-+++++|-|=.+-.+ ++-.-+..+++++-|.|.++|-+-.- -++-++-..+++.+
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~--~tLlPD~~etl~Aae~Lv~eGF~VlP-Y~~dD~v~arrLee------ 149 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDE--KTLLPDPIETLKAAEQLVKEGFVVLP-YTTDDPVLARRLEE------ 149 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCC--cccCCChHHHHHHHHHHHhCCCEEee-ccCCCHHHHHHHHh------
Confidence 4577777778888889999999988777633 22222445689999999999965321 22223333333333
Q ss_pred CCceeeeeccCcccCCc--ch-hhHHHHHHHhCCcEEEcc
Q 021767 218 VPLCSAQVQFSLLSMGE--NQ-LEIKNICDSLGIRLISYS 254 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~~~~--~~-~~l~~~~~~~gi~v~a~s 254 (308)
.-+.+++---+|+-... .. ..+.-...+.++.++.-.
T Consensus 150 ~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDA 189 (262)
T COG2022 150 AGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDA 189 (262)
T ss_pred cCceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeC
Confidence 23455554444433211 11 133444455588887643
No 284
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=27.38 E-value=2.6e+02 Score=24.51 Aligned_cols=29 Identities=10% Similarity=-0.005 Sum_probs=23.0
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCCcCCCC
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTADSYGT 98 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~ 98 (308)
.+.++..++++.|.++|++-+=..++|-.
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~ 45 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLH 45 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccC
Confidence 45688999999999999997765555544
No 285
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=27.34 E-value=4.5e+02 Score=23.41 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCC-ccEEEeecCCHHHHHHHHHHHHHcCCCceee
Q 021767 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYLTARGVPLCSA 223 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 223 (308)
+..+-+.|.++|++.|.+-. |....+.++..+.+.+.++ .+-.+....+.+.++.+.+. .++.+
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~---------P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~------g~~~i 88 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTS---------PAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET------GVDGV 88 (262)
T ss_pred HHHHHHHHHHcCCCEEEEEC---------CCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc------CcCEE
Q ss_pred eeccCc--------ccCCcch-----hhHHHHHHHhCCcEEEc
Q 021767 224 QVQFSL--------LSMGENQ-----LEIKNICDSLGIRLISY 253 (308)
Q Consensus 224 Q~~~~~--------~~~~~~~-----~~l~~~~~~~gi~v~a~ 253 (308)
-+.+.. +.+..++ .+++++++++|+.+...
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
No 286
>PRK13753 dihydropteroate synthase; Provisional
Probab=27.31 E-value=4.7e+02 Score=23.68 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEec-CCCCCCCCh--hHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHc
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLH-WSTANYAPP--QELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH-~~~~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~ 216 (308)
+.+.+.+..++.+ .-|.|.||+---- +|.....+. +...+...++.+++.+. .|.|-+|.++.++.+++.
T Consensus 23 ~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~a---- 95 (279)
T PRK13753 23 DPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKR---- 95 (279)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHc----
Confidence 5566666666644 4578888885543 343222221 12235578888887753 489999999998887653
Q ss_pred CCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccc
Q 021767 217 GVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPL 256 (308)
Q Consensus 217 ~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 256 (308)
|..+ +|-+ +-+ ...++++.+.+.++.++.+--.
T Consensus 96 Gadi-INDV--sg~----~d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 96 GVGY-LNDI--QGF----PDPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred CCCE-EEeC--CCC----CchHHHHHHHHcCCCEEEEecC
Confidence 4332 2222 222 1237888999999998865544
No 287
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=27.24 E-value=4.5e+02 Score=23.44 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=63.2
Q ss_pred CCCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHH---HHHHHHHHHHHcCCc-cEEEeecCCHHHHHHHHHH
Q 021767 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQEL---ALWNGLVAMYEKGLV-RAVGVSNYGPNQLVKIHDY 212 (308)
Q Consensus 137 ~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~---~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~ 212 (308)
..++.+.+++-++..++. | +|-+++-....+...+..+ ++.+...+.. .|++ -.+|++..+.++..++.+.
T Consensus 17 g~id~~~~~~~i~~l~~~-G---v~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~-~~~~~vi~gv~~~st~~~i~~a~~ 91 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEA-G---VDGLVVLGSTGEFYSLTDEERKELLEIVVEAA-AGRVPVIAGVGANSTEEAIELARH 91 (289)
T ss_dssp SSB-HHHHHHHHHHHHHT-T---SSEEEESSTTTTGGGS-HHHHHHHHHHHHHHH-TTSSEEEEEEESSSHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHc-C---CCEEEECCCCcccccCCHHHHHHHHHHHHHHc-cCceEEEecCcchhHHHHHHHHHH
Confidence 345777777777776643 5 5666665332232233222 3333333333 3454 5679999898888888888
Q ss_pred HHHcCCCceeeeeccCcccCCcchhhHHHHH----HHhCCcEEEccc
Q 021767 213 LTARGVPLCSAQVQFSLLSMGENQLEIKNIC----DSLGIRLISYSP 255 (308)
Q Consensus 213 ~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~----~~~gi~v~a~sp 255 (308)
++..|..-..+..+|... ..+.++++++ ..-++.++.|.-
T Consensus 92 a~~~Gad~v~v~~P~~~~---~s~~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 92 AQDAGADAVLVIPPYYFK---PSQEELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp HHHTT-SEEEEEESTSSS---CCHHHHHHHHHHHHHHSSSEEEEEEB
T ss_pred HhhcCceEEEEecccccc---chhhHHHHHHHHHHhhcCCCEEEEEC
Confidence 888886544444444332 2333555554 445889888873
No 288
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=27.18 E-value=2.7e+02 Score=27.05 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=45.2
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcC
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARG 217 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 217 (308)
.+.+...+.+.+.|+.||+++ |-++.. ......+-+.+++|+++|++ |...| +.++++...+.....+
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~y~Q-------Ser~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~~~r~~~~~~~ 115 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRTFRQ-------SDRFDRYDEAAEKLKAAGRL-YPCYE--TPEELELKRKIQLSRG 115 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-CccccH-------HHHHHHHHHHHHHHHHCCCE-EEecC--chHHHHHHHHHHHhCC
Confidence 366888899999999999985 743221 11122467889999999995 44444 6777776655433333
No 289
>PRK10551 phage resistance protein; Provisional
Probab=26.98 E-value=4.4e+02 Score=26.05 Aligned_cols=100 Identities=12% Similarity=0.184 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCH--HHHHHHHHHHHHcCCC
Q 021767 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGP--NQLVKIHDYLTARGVP 219 (308)
Q Consensus 142 ~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~~~~~~~~~ 219 (308)
+.+...+.+.++.++.+..- +.+.-.+.. ..+.....+.++.|++.|- .|.+.+|+. ..+..+.. .+
T Consensus 364 ~~f~~~l~~~l~~~~~~~~~-LvlEItE~~--~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~L~~------l~ 432 (518)
T PRK10551 364 DSFKADVQRLLASLPADHFQ-IVLEITERD--MVQEEEATKLFAWLHSQGI--EIAIDDFGTGHSALIYLER------FT 432 (518)
T ss_pred chHHHHHHHHHHhCCCCcce-EEEEEechH--hcCCHHHHHHHHHHHHCCC--EEEEECCCCCchhHHHHHh------CC
Confidence 44566677777777765432 222222111 1112235678899999997 677777753 33333322 46
Q ss_pred ceeeeeccCcccCCcc-------hhhHHHHHHHhCCcEEE
Q 021767 220 LCSAQVQFSLLSMGEN-------QLEIKNICDSLGIRLIS 252 (308)
Q Consensus 220 ~~~~Q~~~~~~~~~~~-------~~~l~~~~~~~gi~v~a 252 (308)
++.+-+.-+.+..-.. -..+++.|++.|+.+++
T Consensus 433 vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVA 472 (518)
T PRK10551 433 LDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVA 472 (518)
T ss_pred CCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEE
Confidence 7777665444332111 13589999999999987
No 290
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=26.80 E-value=3e+02 Score=23.61 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecC-CHHHHHHHHHHHHHcCC
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY-GPNQLVKIHDYLTARGV 218 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~ 218 (308)
+++...+ +-+.|-+-|++.+.+=+ + +| ...+.+++++++..=-.||.-+. +.++++.+.+. |-
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~-~------t~----~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA 81 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL-R------TP----VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GA 81 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC-C------Cc----cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CC
Confidence 4444444 33445556766655432 2 11 14566667766543345787765 57777766553 33
Q ss_pred CceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 219 PLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 219 ~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
.|.+ +|. .. .+++++|+++||.++.
T Consensus 82 ~Fiv-----sP~---~~-~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 82 QFIV-----SPG---LT-PELAKHAQDHGIPIIP 106 (204)
T ss_pred CEEE-----CCC---CC-HHHHHHHHHcCCcEEC
Confidence 4432 221 22 2889999999988774
No 291
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=26.69 E-value=4.8e+02 Score=24.10 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCcc-EEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccccccc
Q 021767 181 WNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 181 ~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 259 (308)
++.+.+++++-.|. +.|=|-++..++.++++. ...+++|+..+.+- -- .++++.|+++||.++..|.+.++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~-----~a~dvi~ik~~~~G--Gi-t~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARA-----GAADVAVLKVAPLG--GV-RAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEEeCcchhC--CH-HHHHHHHHHcCCcEEEeCCcccH
Confidence 45666666654333 334444566666655442 34777888776641 11 26788999999999876666544
No 292
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.63 E-value=1e+02 Score=22.86 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=21.9
Q ss_pred hhHHHHHHHhCCcEEEcccccccccCCC
Q 021767 237 LEIKNICDSLGIRLISYSPLGLGMLTGK 264 (308)
Q Consensus 237 ~~l~~~~~~~gi~v~a~spl~~G~L~~~ 264 (308)
.++-+.+.+.|+.+....|..-|.+.|+
T Consensus 65 ~~i~~~~~~~~ipv~~I~~~~Y~~mdg~ 92 (95)
T TIGR00853 65 PDLKKETDKKGIPVEVINGAQYGKLTGA 92 (95)
T ss_pred HHHHHHhhhcCCCEEEeChhhcccCCcc
Confidence 3677888899999998888877766553
No 293
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=26.51 E-value=69 Score=30.18 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=9.6
Q ss_pred hHHHHHHHhCCcEEEcccc
Q 021767 238 EIKNICDSLGIRLISYSPL 256 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~spl 256 (308)
.+.+.+++.||.++.-++-
T Consensus 42 ~~~d~l~~~Gi~~~g~s~~ 60 (379)
T PRK13790 42 GLADILRANGFKVFGPNKQ 60 (379)
T ss_pred HHHHHHHhCCCcEECCCHH
Confidence 4455555555555544433
No 294
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=26.50 E-value=4.3e+02 Score=22.93 Aligned_cols=133 Identities=11% Similarity=0.128 Sum_probs=76.7
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHH-HHHH
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQF-VNAC 148 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i-~~~~ 148 (308)
.+.++..++++.|.+.|+.-+-..+.|-. ...+.|+ ...+-|+|=++-+ .+...-.. ....
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~p~~v~---------~a~~~l~--------~~~v~v~tVigFP-~G~~~~~~K~~e~ 80 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVNPSYVK---------LAAELLK--------GSDVKVCTVIGFP-LGANTTAVKAFEA 80 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEECHHHHH---------HHHHHhC--------CCCCeEEEEeccc-CCCChHHHHHHHH
Confidence 46788999999999988887766655442 3333443 2457777777533 23333233 3344
Q ss_pred HHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc--CC-ccEEEeec-CCHHHHHHHHHHHHHcCCCceeee
Q 021767 149 RASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GL-VRAVGVSN-YGPNQLVKIHDYLTARGVPLCSAQ 224 (308)
Q Consensus 149 e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~--G~-ir~iGvSn-~~~~~l~~~~~~~~~~~~~~~~~Q 224 (308)
++.+ ..|.+-+|++ +.+.... .+ +...+.+.+.++++. |+ +|-|==+. .+.+++.++.+.+...|.. ++.
T Consensus 81 ~~Ai-~~GA~EiD~V-in~~~~~-~g-~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agad--fIK 154 (221)
T PRK00507 81 KDAI-ANGADEIDMV-INIGALK-SG-DWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGAD--FVK 154 (221)
T ss_pred HHHH-HcCCceEeee-ccHHHhc-CC-CHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCC--EEE
Confidence 4444 4789999954 4432111 11 234577777777774 33 23211033 4677888888877776654 444
Q ss_pred ec
Q 021767 225 VQ 226 (308)
Q Consensus 225 ~~ 226 (308)
..
T Consensus 155 Ts 156 (221)
T PRK00507 155 TS 156 (221)
T ss_pred cC
Confidence 43
No 295
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=26.47 E-value=4.8e+02 Score=23.48 Aligned_cols=111 Identities=17% Similarity=0.102 Sum_probs=62.5
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChh---HHHHHHHHHHHHHcCCc-cEEEeecCCHHHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQ---ELALWNGLVAMYEKGLV-RAVGVSNYGPNQLVKIHDYL 213 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~---~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~ 213 (308)
.++.+.+++.++..+. -| .+|-+++-.-..+...+. ..++.+...+.. .|++ --+|++..+.++..++.+.+
T Consensus 17 ~iD~~~~~~~i~~~i~-~G--~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~-~~~~pvi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 17 TINEKGLRQIIRHNID-KM--KVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEA-KDQIALIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred CcCHHHHHHHHHHHHh-CC--CcCEEEECCcccccccCCHHHHHHHHHHHHHHh-CCCCcEEEecCCCCHHHHHHHHHHH
Confidence 4688888888887555 33 256666664332322222 233444444433 3544 24688877887777777778
Q ss_pred HHcCCCceee-eeccCcccCCcchhhHHHHHH----Hh-CCcEEEcccc
Q 021767 214 TARGVPLCSA-QVQFSLLSMGENQLEIKNICD----SL-GIRLISYSPL 256 (308)
Q Consensus 214 ~~~~~~~~~~-Q~~~~~~~~~~~~~~l~~~~~----~~-gi~v~a~spl 256 (308)
.+.|..-.++ ...|.. ..+++++++.+ +. ++.++.|..-
T Consensus 93 ~~~Gad~v~v~~P~y~~----~~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 93 TELGYDCLSAVTPFYYK----FSFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred HHhCCCEEEEeCCcCCC----CCHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 7777653333 333333 23346666553 34 6888888643
No 296
>PRK02399 hypothetical protein; Provisional
Probab=26.39 E-value=2e+02 Score=27.56 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEE
Q 021767 146 NACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAV 196 (308)
Q Consensus 146 ~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i 196 (308)
.+++...++|.-...|.+.+|--.. . =++||+|.++|.+..+
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~-----G----GraME~Li~~G~~~gV 240 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGT-----G----GRAMEKLIDSGLIAGV 240 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCC-----c----hHHHHHHHHcCCceEE
Confidence 3444445555444479999995321 1 2799999999998754
No 297
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.15 E-value=3.1e+02 Score=23.34 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCccEEEeecC-CHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 181 WNGLVAMYEKGLVRAVGVSNY-GPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 181 ~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
.+.++.++++--=-.||.-+. +.++++++.+. |-.|.+- | . ...+++++|+++||.++.
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a----GA~FivS-----P---~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA----GAQFIVS-----P---G-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH----T-SEEEE-----S---S---HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc----CCCEEEC-----C---C-CCHHHHHHHHHcCCcccC
Confidence 344444443322245887765 57777776653 3344331 2 1 223899999999999884
No 298
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.11 E-value=5.9e+02 Score=24.37 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=56.7
Q ss_pred eCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCC-CCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCC
Q 021767 91 DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQ-NNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWST 169 (308)
Q Consensus 91 DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R-~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~ 169 (308)
+..-+||. |+.|-++|++..+ ..++ +-++|.|-+... .--+++..-+++.-++++ ++++.+|.+.
T Consensus 75 E~dvVfGg-------~~kL~~~I~~~~~-~~~p~~~I~V~tTC~~~---iIGdDi~~v~~~~~~~~~---~pvi~v~t~g 140 (421)
T cd01976 75 EKDIVFGG-------DKKLAKAIDEAYE-LFPLNKGISVQSECPVG---LIGDDIEAVARKASKELG---IPVVPVRCEG 140 (421)
T ss_pred ccceecCC-------HHHHHHHHHHHHH-hCCCccEEEEECCChHH---HhccCHHHHHHHHHHhhC---CCEEEEeCCC
Confidence 34446786 7788888876431 1123 557788777321 111223333333333444 5889999875
Q ss_pred CCCCCh--hHH----HHHHHHHHH-----HHcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 170 ANYAPP--QEL----ALWNGLVAM-----YEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 170 ~~~~~~--~~~----~~~~~l~~l-----~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
..-... ... .+++.|... ++.+.|.-||-.++. ..+.++.+.++..|+++
T Consensus 141 f~g~s~~~G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~-~d~~el~~lL~~~Gi~v 201 (421)
T cd01976 141 FRGVSQSLGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIG-GDAWASRILLEEMGLRV 201 (421)
T ss_pred ccCCcccHHHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCC-ccHHHHHHHHHHcCCeE
Confidence 431111 111 222222221 114678888866653 23344445555555543
No 299
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=25.98 E-value=1.6e+02 Score=27.97 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcc----hhhHHHHHHHhCCcEE
Q 021767 200 NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGEN----QLEIKNICDSLGIRLI 251 (308)
Q Consensus 200 n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~----~~~l~~~~~~~gi~v~ 251 (308)
||+.+.|+++++.....++|..+.-+-.|...-.+. -.++.+.|+++||.++
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv 223 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVV 223 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEE
Confidence 455566666655433344555555555555443322 1367888888888876
No 300
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=25.91 E-value=4.7e+02 Score=25.02 Aligned_cols=106 Identities=12% Similarity=0.080 Sum_probs=54.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCC--cccEEEecCCCCCCC-ChhHHHHHH
Q 021767 106 EKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIE--QIGIGQLHWSTANYA-PPQELALWN 182 (308)
Q Consensus 106 E~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d--~iDl~~lH~~~~~~~-~~~~~~~~~ 182 (308)
|+.+-+++++........+=|+|.|-+- .+-|=..++...+++.-+ -++++.+|.|..... ......+++
T Consensus 81 ~~~L~~ai~ei~~~~~~P~~I~V~tTC~-------~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~ 153 (427)
T PRK02842 81 NEELDRVVEELIKRRPNISVLFLVGSCP-------SEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLA 153 (427)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCCh-------HHhhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHHHHHHHHHH
Confidence 8888888877211001244567777763 333333344444444433 367888887754321 111222344
Q ss_pred HHHHHH-----HcCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 183 GLVAMY-----EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 183 ~l~~l~-----~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
+|-+.. +.+.|.-+|..| ...+.++.+.++..|+++
T Consensus 154 alv~~~~~~~~~~~~VniiG~~~--~~d~~el~~lL~~~Gi~v 194 (427)
T PRK02842 154 ALVPFCPEAPADHPSLVLVGSLA--DVVEDQLTLEFKKLGIGV 194 (427)
T ss_pred HHhhhcccccCCCCcEEEEEeCC--cchHHHHHHHHHHcCCee
Confidence 333322 246677788755 333445555555566544
No 301
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.88 E-value=2.1e+02 Score=27.10 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=80.2
Q ss_pred HHHHHHHHhhCCC---CCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccE-EEecCCCCCC----CC---
Q 021767 106 EKLLGKFISEIPG---QKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGI-GQLHWSTANY----AP--- 174 (308)
Q Consensus 106 E~~lG~~L~~~~~---~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl-~~lH~~~~~~----~~--- 174 (308)
.+.+-++++-... -++....+.|+|=.- ...|++-.++ .+ .+-| +-||.|++.. -|
T Consensus 184 ydnV~~ai~il~d~~g~~is~R~ITVST~Gi-------vp~I~~la~~---~~---~v~LAiSLHA~~~e~R~~lmPin~ 250 (371)
T PRK14461 184 YDRWWQAVERLHDPQGFNLGARSMTVSTVGL-------VKGIRRLANE---RL---PINLAISLHAPDDALRSELMPVNR 250 (371)
T ss_pred HHHHHHHHHHhcCccccCcCCCceEEEeecc-------hhHHHHHHhc---cc---CceEEEEeCCCCHHHHHHhcCccc
Confidence 4455566655421 124455677777641 2233332222 11 1233 6789886421 11
Q ss_pred -hhHHHHHHHHHHHHHcCCccEEEe-----e--cCCHHHHHHHHHHHHHcC----CCceeeeeccCcccCCc----ch--
Q 021767 175 -PQELALWNGLVAMYEKGLVRAVGV-----S--NYGPNQLVKIHDYLTARG----VPLCSAQVQFSLLSMGE----NQ-- 236 (308)
Q Consensus 175 -~~~~~~~~~l~~l~~~G~ir~iGv-----S--n~~~~~l~~~~~~~~~~~----~~~~~~Q~~~~~~~~~~----~~-- 236 (308)
...+++++++.+..+.-. |.|-+ - |-+.++..++.+.++... .+..+|-++||+..... ..
T Consensus 251 ~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~ 329 (371)
T PRK14461 251 RYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERER 329 (371)
T ss_pred CCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHH
Confidence 133457788877654332 23322 1 668899998888765321 16789999999975321 11
Q ss_pred -hhHHHHHHHhCCcEEEccccccc
Q 021767 237 -LEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 237 -~~l~~~~~~~gi~v~a~spl~~G 259 (308)
....+.++++||.+......|..
T Consensus 330 i~~F~~~L~~~gi~vtiR~s~G~D 353 (371)
T PRK14461 330 VTTFQRILTDYGIPCTVRVERGVE 353 (371)
T ss_pred HHHHHHHHHHCCceEEEeCCCCcC
Confidence 35677889999999988877653
No 302
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=25.75 E-value=4.9e+02 Score=23.36 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHH---HHHHHHHHHHHcCCc-cEEEeecCCHHHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQEL---ALWNGLVAMYEKGLV-RAVGVSNYGPNQLVKIHDYL 213 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~---~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~ 213 (308)
..+.+.+++-++..+..-| +|=+++-....+...++.+ .+.+...+..+ |++ --.|++..+..+..++.+.+
T Consensus 20 ~iD~~~~~~li~~l~~~~G---v~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagvg~~~t~~ai~~a~~a 95 (293)
T PRK04147 20 QIDEQGLRRLVRFNIEKQG---IDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQVGSVNTAEAQELAKYA 95 (293)
T ss_pred CcCHHHHHHHHHHHHhcCC---CCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecCCCCCHHHHHHHHHHH
Confidence 4577888888776666455 4555555433333333333 34443333333 443 45688777777777777778
Q ss_pred HHcCCCceeeeeccCcccCCcchhhHHHH----HHHhCCcEEEcc
Q 021767 214 TARGVPLCSAQVQFSLLSMGENQLEIKNI----CDSLGIRLISYS 254 (308)
Q Consensus 214 ~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~----~~~~gi~v~a~s 254 (308)
.+.|..-..+..+|-. ...+.+++++ |..-++.++.|.
T Consensus 96 ~~~Gad~v~v~~P~y~---~~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 96 TELGYDAISAVTPFYY---PFSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred HHcCCCEEEEeCCcCC---CCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 7777654444444422 1223355554 445578888886
No 303
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.70 E-value=2.9e+02 Score=23.66 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecC-CHHHHHHHHHHHHHcCC
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY-GPNQLVKIHDYLTARGV 218 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~ 218 (308)
+++...+-++ .|-+-|+..+.+=+= +| +..+.+++++++..=-.||.-+. +.++++++.+. |-
T Consensus 14 ~~~~a~~ia~-al~~gGi~~iEit~~-------tp----~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA 77 (201)
T PRK06015 14 DVEHAVPLAR-ALAAGGLPAIEITLR-------TP----AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GS 77 (201)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeCC-------Cc----cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CC
Confidence 4455444444 344466665554321 11 13456666665533245777665 57777766542 33
Q ss_pred CceeeeeccCcccCCcchhhHHHHHHHhCCcEE
Q 021767 219 PLCSAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 219 ~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 251 (308)
.|.+ +|. .. .+++++|+++||.++
T Consensus 78 ~Fiv-----SP~---~~-~~vi~~a~~~~i~~i 101 (201)
T PRK06015 78 RFIV-----SPG---TT-QELLAAANDSDVPLL 101 (201)
T ss_pred CEEE-----CCC---CC-HHHHHHHHHcCCCEe
Confidence 3332 221 22 288888888888776
No 304
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.68 E-value=5.4e+02 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=9.8
Q ss_pred HHHHHHHHHhCCC
Q 021767 291 RSLKEIAERRGKT 303 (308)
Q Consensus 291 ~~l~~ia~~~g~s 303 (308)
.++.++|+.+|+.
T Consensus 278 ~~ia~~A~~~gi~ 290 (355)
T cd03321 278 LRASALAEQAGIP 290 (355)
T ss_pred HHHHHHHHHcCCe
Confidence 4677888888865
No 305
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.65 E-value=2.6e+02 Score=26.40 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=46.6
Q ss_pred HHHHHHHHHc------CCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcc
Q 021767 181 WNGLVAMYEK------GLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 181 ~~~l~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
++.+.+|.+. +.==..|=|.++...+.++++. -..+++|+..+-.--=.+-.++.++|+.+||.++..+
T Consensus 245 ~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-----~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~ 319 (369)
T cd03314 245 IERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-----GAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGG 319 (369)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-----CCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeC
Confidence 5677777766 3333446667788888877654 3478888877654211222478999999999998754
No 306
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=25.64 E-value=1.1e+02 Score=27.88 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=14.2
Q ss_pred hhHHHHHHHhCCcEEE
Q 021767 237 LEIKNICDSLGIRLIS 252 (308)
Q Consensus 237 ~~l~~~~~~~gi~v~a 252 (308)
.+++++|+++||.||.
T Consensus 75 ~elv~yA~~rgI~viP 90 (303)
T cd02742 75 KDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4799999999999984
No 307
>PLN02880 tyrosine decarboxylase
Probab=25.58 E-value=2.1e+02 Score=28.11 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEE-----EeecCC-HHHHHHHHHHHHHcC
Q 021767 144 FVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAV-----GVSNYG-PNQLVKIHDYLTARG 217 (308)
Q Consensus 144 i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i-----GvSn~~-~~~l~~~~~~~~~~~ 217 (308)
..-++++++.-||+..=.+..+.........++...+-+++++.+++|++=.+ |-++.. .+.+.++.++|+..+
T Consensus 190 aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~ 269 (490)
T PLN02880 190 THSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNG 269 (490)
T ss_pred chHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcC
Confidence 35678888888887654455555332122244555566788888888865443 444443 356777777787777
Q ss_pred CC
Q 021767 218 VP 219 (308)
Q Consensus 218 ~~ 219 (308)
+.
T Consensus 270 iw 271 (490)
T PLN02880 270 MW 271 (490)
T ss_pred CE
Confidence 53
No 308
>PRK09061 D-glutamate deacylase; Validated
Probab=25.52 E-value=6.6e+02 Score=24.74 Aligned_cols=117 Identities=12% Similarity=0.100 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHH
Q 021767 74 QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLA 153 (308)
Q Consensus 74 ~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~ 153 (308)
+..++++.|++.|...|=+...|-. +.+...+-+.++.. .+.+..|......... .+......++++.++
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p----~~~~~eL~~l~~~A-----~~~g~~v~~H~e~~~~-~~~~~e~~av~~~i~ 239 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAP----GTGHKEYLELARLA-----ARAGVPTYTHVRYLSN-VDPRSSVDAYQELIA 239 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCC----CCCHHHHHHHHHHH-----HHcCCEEEEEecCccc-CCchhHHHHHHHHHH
Confidence 3677888899999999977666643 33566666666552 3456777777742210 112222334444443
Q ss_pred hhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCC
Q 021767 154 RLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYG 202 (308)
Q Consensus 154 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 202 (308)
....--.-+.+.|-..... ....+.++.+++++++|.-=..-++-|.
T Consensus 240 lA~~~G~rv~IsHlss~g~--~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 240 AAAETGAHMHICHVNSTSL--RDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHhCCCEEEEeeccCCc--ccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 2221123466667432111 1234578899999999964444555444
No 309
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=25.43 E-value=2e+02 Score=26.73 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccCccc----------CCcch--hhHHHHHHHhCCcEEEcc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFSLLS----------MGENQ--LEIKNICDSLGIRLISYS 254 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~----------~~~~~--~~l~~~~~~~gi~v~a~s 254 (308)
+.+++.++++..++.++|++++.+...... +-+.. .++++..+++|+.++.+.
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 456677777667777778777666433211 11233 589999999999987653
No 310
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.40 E-value=3.3e+02 Score=26.27 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCccEE-----EeecCCH-----H-HHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCc
Q 021767 181 WNGLVAMYEKGLVRAV-----GVSNYGP-----N-QLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (308)
Q Consensus 181 ~~~l~~l~~~G~ir~i-----GvSn~~~-----~-~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~ 249 (308)
++.|.+|.++|+|..+ +..+... . --.++.+.+++.++.-.+.-..+-.++|... -+....++.||.
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga--~m~keiE~~GIP 366 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGA--TMVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHH--HHHHHHHHcCCC
Confidence 5799999999999654 4443322 1 1334555566677654444445555555443 567777889999
Q ss_pred EEEccc
Q 021767 250 LISYSP 255 (308)
Q Consensus 250 v~a~sp 255 (308)
++-+..
T Consensus 367 vV~i~~ 372 (431)
T TIGR01917 367 VVHICT 372 (431)
T ss_pred EEEEee
Confidence 875443
No 311
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=25.33 E-value=1e+02 Score=27.66 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCH
Q 021767 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGP 203 (308)
Q Consensus 142 ~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 203 (308)
+-+.+-.++.|-..+ |..=+.=+.-. +|.. .....|++|++.| +-||.||..
T Consensus 66 ~iv~em~~eiLp~v~-~tPViaGv~at----DP~~--~~~~fl~~lk~~G---f~GV~NfPT 117 (268)
T PF09370_consen 66 EIVMEMAREILPVVK-DTPVIAGVCAT----DPFR--DMDRFLDELKELG---FSGVQNFPT 117 (268)
T ss_dssp HHHHHHHHHHGGG-S-SS-EEEEE-TT-----TT----HHHHHHHHHHHT----SEEEE-S-
T ss_pred HHHHHHHHhhhhhcc-CCCEEEEecCc----CCCC--cHHHHHHHHHHhC---CceEEECCc
Confidence 334444466666665 22223333321 3433 2567889999999 589999963
No 312
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=25.28 E-value=3.2e+02 Score=21.24 Aligned_cols=63 Identities=10% Similarity=-0.018 Sum_probs=42.4
Q ss_pred CCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCC---cccEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 021767 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIE---QIGIGQLHWSTANYAPPQELALWNGLVAMYE 189 (308)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d---~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~ 189 (308)
.|=.+.|+-|+|. ...++.+++-+.++.+.+..+ -.|++++-.+... ..+..++.+.|+.+.+
T Consensus 48 ~R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~--~~~~~~l~~~l~~ll~ 113 (122)
T PRK03459 48 PRFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAA--TASSAELERDVRAGLG 113 (122)
T ss_pred CEEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccc--cCCHHHHHHHHHHHHH
Confidence 5778899999874 235778888888888776543 3699999876433 2233445566655544
No 313
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=25.20 E-value=6.3e+02 Score=24.40 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=57.1
Q ss_pred eCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCCCcccEEEecCCCC
Q 021767 91 DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTA 170 (308)
Q Consensus 91 DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~ 170 (308)
+..-.||. |+.|-++|++..+ ..+.+=++|.|-+-.. .--+++..-+++.-++.+ +.++.++.++.
T Consensus 98 E~dvVfGg-------~~kL~~~I~e~~~-~~~P~~I~V~ttC~~~---lIGdDi~~v~~e~~~~~~---~~vi~v~t~gf 163 (456)
T TIGR01283 98 EKDVIFGG-------EKKLFHAIREIVE-RYHPPAVFVYSTCVPG---LIGDDLEAVCKAAAEKTG---IPVIPVDSEGF 163 (456)
T ss_pred cCceEeCC-------HHHHHHHHHHHHH-hCCCCEEEEECCChHH---HhcCCHHHHHHHHHHHhC---CCEEEEECCCC
Confidence 44456786 8888888876431 1245567777776321 112223333333223333 57888987754
Q ss_pred CCCC-hhHHHHHHHHHHHH-H------------cCCccEEEeecCCHHHHHHHHHHHHHcCCCc
Q 021767 171 NYAP-PQELALWNGLVAMY-E------------KGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (308)
Q Consensus 171 ~~~~-~~~~~~~~~l~~l~-~------------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 220 (308)
.... .....++++|-+.. + .+.|.-||-.+.. ..+.++.+.++..|+.+
T Consensus 164 ~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~-~d~~el~~lL~~~Gl~v 226 (456)
T TIGR01283 164 YGSKNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVA-GEFWHVKPLLEKLGIRV 226 (456)
T ss_pred ccchhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCc-ccHHHHHHHHHHcCCeE
Confidence 3211 11122344443322 1 4678888865532 23334444444555543
No 314
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=25.11 E-value=5.5e+02 Score=23.69 Aligned_cols=23 Identities=22% Similarity=0.246 Sum_probs=17.5
Q ss_pred hHHHHHHHhCCcEEEcccccccc
Q 021767 238 EIKNICDSLGIRLISYSPLGLGM 260 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a~spl~~G~ 260 (308)
+-++.+++.||.+..-++|..|.
T Consensus 241 ~ai~~L~~aGi~v~~qtvLl~gv 263 (331)
T TIGR00238 241 EAMKKLRTVNVTLLNQSVLLRGV 263 (331)
T ss_pred HHHHHHHHcCCEEEeecceECCc
Confidence 45667788888888888887764
No 315
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=25.07 E-value=3.5e+02 Score=25.74 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHcCCCc
Q 021767 205 QLVKIHDYLTARGVPL 220 (308)
Q Consensus 205 ~l~~~~~~~~~~~~~~ 220 (308)
.++++.+.|+..+..+
T Consensus 163 dl~~I~~la~~~gi~v 178 (405)
T PRK08776 163 DLRFVIEAAHKVGALT 178 (405)
T ss_pred CHHHHHHHHHHcCCEE
Confidence 3555555555555433
No 316
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.06 E-value=5e+02 Score=23.19 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCCc
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTAD 94 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA~ 94 (308)
.+.++..++.....+.|+..|+...
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccC
Confidence 3557778888888899999999874
No 317
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=24.96 E-value=5.1e+02 Score=23.29 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHh---hCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecC----CHHHHHHHHHH
Q 021767 140 TPGQFVNACRASLAR---LQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY----GPNQLVKIHDY 212 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~---L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~----~~~~l~~~~~~ 212 (308)
++++..+.+.+..+. +|. ++.+..-++.... ..+.+.+.+..+++.+.| +..|.++.- +|.++.++++.
T Consensus 109 t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~--r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~ 184 (280)
T cd07945 109 TPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGM--RDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISD 184 (280)
T ss_pred CHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCC--cCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHH
Confidence 555555555544443 343 4555555522111 112344677777888887 677887753 68888888776
Q ss_pred HHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccccccCCC
Q 021767 213 LTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGK 264 (308)
Q Consensus 213 ~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 264 (308)
.+.. .+ . ..+.+|.-+..-.-..-.-.+-+.|+..+--+..+.|--+|+
T Consensus 185 l~~~-~~-~-~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN 233 (280)
T cd07945 185 MVKR-YP-N-LHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGN 233 (280)
T ss_pred HHhh-CC-C-CeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccC
Confidence 5532 22 1 123333322111111223345677999887666666644444
No 318
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.94 E-value=2.2e+02 Score=20.44 Aligned_cols=15 Identities=7% Similarity=0.395 Sum_probs=11.1
Q ss_pred hHHHHHHHhCCcEEE
Q 021767 238 EIKNICDSLGIRLIS 252 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a 252 (308)
.+..+|++++|.++-
T Consensus 44 ~i~~~c~~~~Vp~~~ 58 (82)
T PRK13602 44 KVEALANEKGVPVSK 58 (82)
T ss_pred HHHHHHHHcCCCEEE
Confidence 677778888877764
No 319
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=24.92 E-value=5.1e+02 Score=23.28 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=38.8
Q ss_pred cccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHH
Q 021767 159 QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKI 209 (308)
Q Consensus 159 ~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 209 (308)
..+++++..|....++.....+++.|.+++++|+ .|=+++|..+.+.++
T Consensus 142 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~--tvi~~sH~~~~~~~~ 190 (302)
T TIGR01188 142 QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV--TILLTTHYMEEADKL 190 (302)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC--EEEEECCCHHHHHHh
Confidence 5699999988776677666779999999988874 567888988776654
No 320
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=24.89 E-value=1.8e+02 Score=27.69 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHcC-CccEEEeecCC
Q 021767 178 LALWNGLVAMYEKG-LVRAVGVSNYG 202 (308)
Q Consensus 178 ~~~~~~l~~l~~~G-~ir~iGvSn~~ 202 (308)
..+++.++.|.++| .|.++.|-+..
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G 127 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNG 127 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCC
Confidence 34666666665556 46666665543
No 321
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=24.89 E-value=2.3e+02 Score=27.22 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCccEEEeecC-CHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcccccc
Q 021767 180 LWNGLVAMYEKGLVRAVGVSNY-GPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGL 258 (308)
Q Consensus 180 ~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 258 (308)
+...|+++.. ++-+..+| +.+.++.+.+..+. +........+-||+..-..-..+.+.|+++|+.++.=..+++
T Consensus 129 T~~~l~~~~~----~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~ 203 (409)
T KOG0053|consen 129 TLRILRKFLP----KFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGS 203 (409)
T ss_pred HHHHHHHHHH----HhCceeeeechhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCc
Confidence 4444444444 23333333 45566666554332 345666777888877665556889999999999998888888
Q ss_pred cccCC
Q 021767 259 GMLTG 263 (308)
Q Consensus 259 G~L~~ 263 (308)
+.+..
T Consensus 204 p~~~~ 208 (409)
T KOG0053|consen 204 PYNQD 208 (409)
T ss_pred ccccC
Confidence 75443
No 322
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=24.83 E-value=5.5e+02 Score=23.57 Aligned_cols=133 Identities=10% Similarity=0.002 Sum_probs=67.0
Q ss_pred CCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHH---
Q 021767 69 ESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFV--- 145 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~--- 145 (308)
..+.++..+.++.+.+.|++.|-....... ......+-+.++.. .+...-+..+ ..++..+.
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p----~~~~~~~~~li~~I-----k~~~~~i~~~------~~s~~ei~~~~ 135 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNP----DLGLDYYEDLFRAI-----KARFPHIHIH------SFSPVEIVYIA 135 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCC----CCCHHHHHHHHHHH-----HHHCCCcCCC------CCCHHHHHHHh
Confidence 357788889999999999987765432211 11122233333331 1110011111 11232221
Q ss_pred -------HHHHHHHHhhCCCcccEEEecCCCC----CC--CChhHHHHHHHHHHHHHcCCccE----EEeecCCHHHHHH
Q 021767 146 -------NACRASLARLQIEQIGIGQLHWSTA----NY--APPQELALWNGLVAMYEKGLVRA----VGVSNYGPNQLVK 208 (308)
Q Consensus 146 -------~~~e~sL~~L~~d~iDl~~lH~~~~----~~--~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~ 208 (308)
+..-+.|++.|++.++..-....++ .. ......+.+++++.+++.|.--. +|+ ..+.+++.+
T Consensus 136 ~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 136 KKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred ccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 4455566777888775210000000 00 11234557899999999996322 243 556677666
Q ss_pred HHHHHHHcC
Q 021767 209 IHDYLTARG 217 (308)
Q Consensus 209 ~~~~~~~~~ 217 (308)
.+..++..+
T Consensus 215 ~l~~l~~l~ 223 (340)
T TIGR03699 215 HLERIRELQ 223 (340)
T ss_pred HHHHHHHhc
Confidence 666655444
No 323
>PLN02444 HMP-P synthase
Probab=24.82 E-value=85 Score=31.27 Aligned_cols=95 Identities=9% Similarity=0.062 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccccccc
Q 021767 180 LWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (308)
Q Consensus 180 ~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 259 (308)
+++++++.. | .+.+.+.+.+.+.++.=...|+.+..+ +.-+ .. +.++..+++=.++++. ||
T Consensus 283 IYqA~~~~~--~-----~~~~lt~d~~~d~ieeQaeqGVDfmTI--H~Gv-----~~-~~v~~~~~R~tgIVSR----GG 343 (642)
T PLN02444 283 IYQALEKVD--G-----IAENLTWEVFRETLIEQAEQGVDYFTI--HAGV-----LL-RYIPLTAKRMTGIVSR----GG 343 (642)
T ss_pred HHHHHHHhc--C-----ChhhCCHHHHHHHHHHHHHhCCCEEEE--Chhh-----HH-HHHHHHhCcccCceeC----Cc
Confidence 556666554 2 456778887665554323345555444 3322 12 6677776555555542 33
Q ss_pred ccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 260 MLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 260 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
.+.-+|--.+-.+++ +| +-.+.|.+|+++|++|.
T Consensus 344 Si~a~Wml~~~kENP---lY--------e~FD~ileI~k~YDVtl 377 (642)
T PLN02444 344 SIHAKWCLAYHKENF---AY--------EHWDDILDICNQYDIAL 377 (642)
T ss_pred HHHHHHHHHcCCcCc---hH--------HHHHHHHHHHHHhCeee
Confidence 222222100001111 12 22367888888888765
No 324
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=24.77 E-value=8.4e+02 Score=27.21 Aligned_cols=91 Identities=7% Similarity=-0.035 Sum_probs=51.3
Q ss_pred hhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc-CCc--cEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcc
Q 021767 154 RLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK-GLV--RAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLL 230 (308)
Q Consensus 154 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~-G~i--r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~ 230 (308)
+-|.+.||+- ++. ...+..+.++.+..+.+. -.+ --|-|-++.++-++.+++.+. .++.+|-+..--.
T Consensus 395 e~GA~iIDVn----~g~--~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~---G~~IINSIs~~~~ 465 (1229)
T PRK09490 395 ENGAQIIDIN----MDE--GMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQ---GKGIVNSISLKEG 465 (1229)
T ss_pred HCCCCEEEEC----CCC--CCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcC---CCCEEEeCCCCCC
Confidence 4588999994 332 222333233333333332 111 125666778888888877532 3456665543222
Q ss_pred cCCcchhhHHHHHHHhCCcEEEccc
Q 021767 231 SMGENQLEIKNICDSLGIRLISYSP 255 (308)
Q Consensus 231 ~~~~~~~~l~~~~~~~gi~v~a~sp 255 (308)
+ ..-.++++.|+++|..++++.-
T Consensus 466 ~--~~~~~~~~l~~kyga~vV~m~~ 488 (1229)
T PRK09490 466 E--EKFIEHARLVRRYGAAVVVMAF 488 (1229)
T ss_pred C--ccHHHHHHHHHHhCCCEEEEec
Confidence 1 1112689999999999998653
No 325
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.70 E-value=1.9e+02 Score=21.97 Aligned_cols=69 Identities=22% Similarity=0.159 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCC-CC---------------C
Q 021767 74 QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAA-YP---------------W 137 (308)
Q Consensus 74 ~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~-~~---------------~ 137 (308)
.....---++++|.-|+-|-..|--++ |.++---|-+ ..+++++.+|+.+ .+ .
T Consensus 21 ~LYsaYMpfl~nGglFVpTnk~y~iG~-----evfl~l~lld------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d 89 (117)
T COG3215 21 LLYSAYMPFLENGGLFVPTNKVYSIGE-----EVFLLLELLD------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTD 89 (117)
T ss_pred HHHHHHhHHHhcCcEEcccCCccccch-----hhhhhhhhcC------chhhccccceEEEEccCCCCCCCCceeeeccC
Confidence 345555567899999999999996521 6665554444 3568889988742 11 1
Q ss_pred CCChHHHHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLA 153 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~ 153 (308)
+-.-..+|..+|.-|.
T Consensus 90 ~e~g~~vr~~IE~~Lg 105 (117)
T COG3215 90 GENGLKVRNQIETLLG 105 (117)
T ss_pred CCchhhHHHHHHHHHH
Confidence 1133467788887773
No 326
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.56 E-value=4.9e+02 Score=24.38 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCC----ccEEEee--cCCHHHHHHHHHHHHHcCCCceeeeeccCcccCC----cch---hhHHHHH
Q 021767 177 ELALWNGLVAMYEKGL----VRAVGVS--NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMG----ENQ---LEIKNIC 243 (308)
Q Consensus 177 ~~~~~~~l~~l~~~G~----ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~----~~~---~~l~~~~ 243 (308)
.+.++++++++.+.+. |+++=+. |-+.++++++.+.++. .+..++=++||++... +.. ..+.+.+
T Consensus 245 l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~--l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L 322 (356)
T PRK14455 245 LEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKG--IKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTL 322 (356)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHH
Confidence 3668999998877542 3445333 5567888888887653 3466777899987632 111 3456778
Q ss_pred HHhCCcEEEccccccc
Q 021767 244 DSLGIRLISYSPLGLG 259 (308)
Q Consensus 244 ~~~gi~v~a~spl~~G 259 (308)
+++|+.+......|..
T Consensus 323 ~~~gi~v~ir~~~g~d 338 (356)
T PRK14455 323 KKNGVNCTIRREHGTD 338 (356)
T ss_pred HHCCCcEEEeCCCCcc
Confidence 9999999877766543
No 327
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=24.43 E-value=6.5e+02 Score=24.28 Aligned_cols=164 Identities=17% Similarity=0.112 Sum_probs=88.1
Q ss_pred CcHHHHHHHHHHHHHc-CCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCC-CEEEEeccCCCCCCCChHHHHHH
Q 021767 70 SMDSQLQQTFNLAVEN-GINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQN-NIVIATKFAAYPWRLTPGQFVNA 147 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~-Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~-~v~i~tK~~~~~~~~~~~~i~~~ 147 (308)
.+.++..+++++..+. +++-+--+ | |++.-.+...+-..|+.+.+ ++.- .+.|.|++... .+..+...
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLS---G-GDPLll~d~~L~~iL~~L~~--IphV~~IRI~TR~pvv----~P~RIT~e 207 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLS---G-GDPLLLSDDYLDWILTELRA--IPHVEVIRIGTRVPVV----LPQRITDE 207 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEe---C-CccccCChHHHHHHHHHHhh--cCCCceEEEeeccccc----cccccCHH
Confidence 4667888888888774 77643222 1 11111223333232332211 2222 36788886432 23334445
Q ss_pred HHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEE------EeecCCHHHHHHHHHHHHHcCCC-c
Q 021767 148 CRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAV------GVSNYGPNQLVKIHDYLTARGVP-L 220 (308)
Q Consensus 148 ~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i------GvSn~~~~~l~~~~~~~~~~~~~-~ 220 (308)
+-+.|++.+ .-.+.+|.-.. .....++.++++.|+++|..-.. | .|-+++.+.++.+.+...++. .
T Consensus 208 ll~~Lk~~~---~~~v~~h~nhp---~Eit~~a~~Al~~L~~aGI~l~nQsVLLkG-VND~~~~l~~L~~~L~~~gV~PY 280 (417)
T TIGR03820 208 LVAILKKHH---PVWLNTHFNHP---REITASSKKALAKLADAGIPLGNQSVLLAG-VNDCPRIMKKLVHKLVANRVRPY 280 (417)
T ss_pred HHHHHHhcC---CeEEEEeCCCh---HhChHHHHHHHHHHHHcCCEEEeeceEECC-cCCCHHHHHHHHHHHHHCCCeec
Confidence 555566665 34456785322 12235689999999999963222 3 366888888888877777764 3
Q ss_pred eeeeeccCcccCCc-----chhhHHHHHHHh--CCcE
Q 021767 221 CSAQVQFSLLSMGE-----NQLEIKNICDSL--GIRL 250 (308)
Q Consensus 221 ~~~Q~~~~~~~~~~-----~~~~l~~~~~~~--gi~v 250 (308)
-..|.........+ ...++++..+.+ |..+
T Consensus 281 Yl~~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG~~v 317 (417)
T TIGR03820 281 YLYQCDLSEGLSHFRTPVGKGIEIIESLIGHTSGFAV 317 (417)
T ss_pred eeeeccCCCCcccccCcHHHHHHHHHHHHHhCCCCCc
Confidence 44454433221111 113567777766 5544
No 328
>PRK08084 DNA replication initiation factor; Provisional
Probab=24.43 E-value=4.6e+02 Score=22.63 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=34.0
Q ss_pred cccEEEecCCCCC-CCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHH
Q 021767 159 QIGIGQLHWSTAN-YAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLV 207 (308)
Q Consensus 159 ~iDl~~lH~~~~~-~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~ 207 (308)
..|+++|...+.. ..+.....+++.+..+++.|+++-|+.|+..+..+.
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~ 146 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLN 146 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcC
Confidence 3588887643211 112233457788999999999999999998887754
No 329
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=24.35 E-value=2.5e+02 Score=22.80 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH--cCCccEEEeecCCHHHHHHHHHHHHHc
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~~~~l~~~~~~~~~~ 216 (308)
.+.+.+.+.+++--+.+|++ ++++|-. .+.++.+.+++..+ .|.|-.=|--+|+.-.+.+++..
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~-v~~~QSN---------~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~---- 91 (146)
T PRK05395 26 TTLADIEALLEEEAAELGVE-LEFFQSN---------HEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAA---- 91 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeC---------cHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHc----
Confidence 47899999999988889873 6666554 13457777777753 33443345555666666666554
Q ss_pred CCCceeeeeccCcccCC
Q 021767 217 GVPLCSAQVQFSLLSMG 233 (308)
Q Consensus 217 ~~~~~~~Q~~~~~~~~~ 233 (308)
+.+-++.++.+-.+.+
T Consensus 92 -~~~P~VEVHiSNi~aR 107 (146)
T PRK05395 92 -VSIPVIEVHLSNIHAR 107 (146)
T ss_pred -CCCCEEEEecCCcccc
Confidence 4556788888776543
No 330
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=24.33 E-value=1.5e+02 Score=26.93 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHhhCCCccc--EEEecCCCCCCCChhHHHHHHHHHHHHHcCCccE
Q 021767 141 PGQFVNACRASLARLQIEQIG--IGQLHWSTANYAPPQELALWNGLVAMYEKGLVRA 195 (308)
Q Consensus 141 ~~~i~~~~e~sL~~L~~d~iD--l~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 195 (308)
.+...+.+.+.|++||+.+ | .++.-. .+.-...+++.+++|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~-----~~~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITT-----EPEYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECC-----CHHHHHHHHHHHHHHHHCCCEEe
Confidence 4566778889999999854 4 333221 22234568999999999999765
No 331
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=24.30 E-value=2e+02 Score=26.32 Aligned_cols=52 Identities=10% Similarity=0.259 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccCccc------CC----cchhhHHHHHHHhCCcEEEc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFSLLS------MG----ENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~------~~----~~~~~l~~~~~~~gi~v~a~ 253 (308)
+.+++.++++..++.++|++++.+.....+ .. +...++++..+++|+.++.+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~ 83 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTI 83 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEE
Confidence 455666666666666677776655432221 11 12247888889889888754
No 332
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=24.24 E-value=4e+02 Score=26.27 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc
Q 021767 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR 194 (308)
Q Consensus 142 ~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir 194 (308)
+...+.+++.+++||++ +|.+. . . .++.-...+.+.+++|+++|.|-
T Consensus 68 ~~~~~~~~~~l~~LgI~-~D~~~-~-t---~~~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 68 DKYHEEFKDDWKWLNIS-FDRFI-R-T---TDEEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCc-c-C---CCHHHHHHHHHHHHHHHHCCCEE
Confidence 44567788999999997 57532 1 1 12222344788999999999984
No 333
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=24.22 E-value=2.1e+02 Score=26.49 Aligned_cols=52 Identities=12% Similarity=0.223 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccCccc------C----CcchhhHHHHHHHhCCcEEEc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFSLLS------M----GENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~------~----~~~~~~l~~~~~~~gi~v~a~ 253 (308)
+.+++.++++..++.++|++++.+.....+ . -+...++++..+++|+.++.+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTI 83 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEE
Confidence 455555555556666666666655422111 1 112247888888888888754
No 334
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=24.11 E-value=2.9e+02 Score=22.30 Aligned_cols=79 Identities=19% Similarity=0.136 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH--cCCccEEEeecCCHHHHHHHHHHHHHc
Q 021767 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (308)
Q Consensus 139 ~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~~~~l~~~~~~~~~~ 216 (308)
.+.+.+.+.+++--+.+|++ ++++|-. .+.++.+.+++..+ .|.|-.=|--+|+.-.+..++..
T Consensus 24 ~tl~di~~~~~~~a~~~g~~-v~~~QSN---------~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~---- 89 (141)
T TIGR01088 24 QTLEEIVEIIETFAAQLNVE-LEFFQSN---------SEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAA---- 89 (141)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeC---------cHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHc----
Confidence 37899999999999999863 5655544 13457777777754 34544445556666666666553
Q ss_pred CCCceeeeeccCcccC
Q 021767 217 GVPLCSAQVQFSLLSM 232 (308)
Q Consensus 217 ~~~~~~~Q~~~~~~~~ 232 (308)
+..-++.++.+-.+.
T Consensus 90 -~~~P~vEVHiSNi~a 104 (141)
T TIGR01088 90 -VSLPVVEVHLSNVHA 104 (141)
T ss_pred -CCCCEEEEEcCCccc
Confidence 455577888877653
No 335
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.04 E-value=4.3e+02 Score=22.14 Aligned_cols=101 Identities=13% Similarity=0.202 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHH--HHHHHHHHHHHcCCC
Q 021767 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPN--QLVKIHDYLTARGVP 219 (308)
Q Consensus 142 ~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~--~l~~~~~~~~~~~~~ 219 (308)
..+...+.+.|++.+... +-+.+--.+..... ....+.+.++.|++.|- .+.+.+|+.. .+..+.. .+
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~-~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~------l~ 168 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLD-DDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR------LP 168 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhc-ChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh------CC
Confidence 344566677777766542 23333322211111 12234588999999996 5788887643 3333322 46
Q ss_pred ceeeeeccCcccCCc-------chhhHHHHHHHhCCcEEE
Q 021767 220 LCSAQVQFSLLSMGE-------NQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 220 ~~~~Q~~~~~~~~~~-------~~~~l~~~~~~~gi~v~a 252 (308)
|+.+-+..+.+..-. .-..++..|+..|+.+++
T Consensus 169 ~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 208 (241)
T smart00052 169 VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVA 208 (241)
T ss_pred CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 777777655543211 113678999999999987
No 336
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=23.71 E-value=1.8e+02 Score=26.93 Aligned_cols=52 Identities=8% Similarity=0.195 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccC------cccCC----cchhhHHHHHHHhCCcEEEc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFS------LLSMG----ENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~------~~~~~----~~~~~l~~~~~~~gi~v~a~ 253 (308)
+.+++.++++..++.++|++++.+... .+... +...++++..+++|+.++.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~ 83 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTI 83 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 345555555555555666665533321 11111 11235777777777776653
No 337
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=23.66 E-value=1.6e+02 Score=24.52 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=19.2
Q ss_pred CChhHHHHHHHHHHHHHcCCccEEEeec
Q 021767 173 APPQELALWNGLVAMYEKGLVRAVGVSN 200 (308)
Q Consensus 173 ~~~~~~~~~~~l~~l~~~G~ir~iGvSn 200 (308)
.|+++.++-+.+++++++| |++|.||.
T Consensus 129 ~~ld~~~v~~~~~~l~~~g-v~avAV~~ 155 (176)
T PF05378_consen 129 EPLDEDEVREALRELKDKG-VEAVAVSL 155 (176)
T ss_pred cCCCHHHHHHHHHHHHhCC-CCEEEEEC
Confidence 3455666777788888777 78887764
No 338
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=23.49 E-value=3.4e+02 Score=20.68 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=42.1
Q ss_pred CCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCC---CcccEEEecCCCCCCCChhHHHHHHHHHHHHHc
Q 021767 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI---EQIGIGQLHWSTANYAPPQELALWNGLVAMYEK 190 (308)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~---d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~ 190 (308)
.|=.+.|+-|++. ...++.+++.+.+.++.+.. ...|++++-.+.... .+..++.+.|..|.+.
T Consensus 38 ~R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~--~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAE--LDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCccc--CCHHHHHHHHHHHHHH
Confidence 5667888888864 33678888888888876643 357999998775332 2334455666555443
No 339
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.35 E-value=5e+02 Score=22.74 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCChHHHHHHHHHHHHhhCCCc--------------------------ccEEEecCCCCCCCChhHHHHHHHHHHHHHcC
Q 021767 138 RLTPGQFVNACRASLARLQIEQ--------------------------IGIGQLHWSTANYAPPQELALWNGLVAMYEKG 191 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~--------------------------iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G 191 (308)
..+.+.+++.+++.|+..+... .+++++.-|....++....++++.+.+|++++
T Consensus 109 g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 109 GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4577778889999998888643 23444444433334444567899999999997
Q ss_pred CccEEEeecCCHHHHHH
Q 021767 192 LVRAVGVSNYGPNQLVK 208 (308)
Q Consensus 192 ~ir~iGvSn~~~~~l~~ 208 (308)
...-|-+ +|+.+.+..
T Consensus 189 ~~tii~~-tHd~~~~~~ 204 (235)
T COG1122 189 GKTIIIV-THDLELVLE 204 (235)
T ss_pred CCeEEEE-eCcHHHHHh
Confidence 6555544 566665544
No 340
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=23.31 E-value=5.4e+02 Score=22.96 Aligned_cols=112 Identities=7% Similarity=0.023 Sum_probs=61.5
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH--cCCc-cEEEeecCCHHHHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLV-RAVGVSNYGPNQLVKIHDYLT 214 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~--~G~i-r~iGvSn~~~~~l~~~~~~~~ 214 (308)
.++.+.+++.++..++ -|+ |=+++-....+...+..++-.+.++...+ .|++ -..|++..+.++..++.+.+.
T Consensus 15 ~iD~~~~~~~i~~l~~-~Gv---~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 15 SVDFAALEKLIDFQIE-NGT---DAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred CcCHHHHHHHHHHHHH-cCC---CEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHH
Confidence 4577888888886665 454 44554322222223333333333443333 2543 356888878777777777777
Q ss_pred HcCCCceeeeeccCcccCCcchhhHHHH----HHHhCCcEEEcccc
Q 021767 215 ARGVPLCSAQVQFSLLSMGENQLEIKNI----CDSLGIRLISYSPL 256 (308)
Q Consensus 215 ~~~~~~~~~Q~~~~~~~~~~~~~~l~~~----~~~~gi~v~a~spl 256 (308)
..|..-.++..+|..- ..+++++++ |+.-++.++.|.--
T Consensus 91 ~~Gad~v~v~pP~y~~---~~~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 91 DVGADGFLVVTPYYNK---PTQEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred HcCCCEEEEcCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 7776544444444321 223355554 44457888877543
No 341
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=23.30 E-value=3.6e+02 Score=23.42 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCc------cEEEeecCCHHHHHHHHHHHHH
Q 021767 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV------RAVGVSNYGPNQLVKIHDYLTA 215 (308)
Q Consensus 142 ~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~i------r~iGvSn~~~~~l~~~~~~~~~ 215 (308)
......++..-+-.+-..|+.+++... + ......|.+.-.++|.+.|-- -+-|+++ .+.+.++.+.
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGD--N-~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrT--LDSvvRA~kV--- 147 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGD--N-ATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRT--LDSVVRARKV--- 147 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecC--C-CcccccchHHHHHHHHHcCCCHHHeeecccCccH--HHHHHHHHHH---
Confidence 345556676667777788998888843 2 222333467778889999863 3345543 4445555443
Q ss_pred cCC-CceeeeeccCcccCCcchhhHHHHHHHhCCcEEEcc
Q 021767 216 RGV-PLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 216 ~~~-~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 254 (308)
.+. .+.++--+||. +.-+=.|+.+||.-+++.
T Consensus 148 F~~~~ftIItQ~FHc-------eRAlfiA~~~gIdAic~~ 180 (235)
T COG2949 148 FGTNDFTIITQRFHC-------ERALFIARQMGIDAICFA 180 (235)
T ss_pred cCcCcEEEEeccccc-------HHHHHHHHHhCCceEEec
Confidence 222 34444444432 256778999999988743
No 342
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=22.99 E-value=1.8e+02 Score=23.98 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEe
Q 021767 74 QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIAT 130 (308)
Q Consensus 74 ~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~t 130 (308)
...-+-....+.|++.....-.-. .+..|-++|+... .+.+++|+|
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~D-------d~~~I~~~l~~~~----~~~dlVItt 65 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGD-------DEDRIAEALRRAS----ERADLVITT 65 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCC-------CHHHHHHHHHHHH----hCCCEEEEC
Confidence 343444445567998766544433 4777888887642 578899998
No 343
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=22.96 E-value=1.6e+02 Score=26.96 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCc
Q 021767 141 PGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV 193 (308)
Q Consensus 141 ~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~i 193 (308)
.+...+.+.+.+++||++ +|.+.-. . ++.....+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t----t-~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT----T-SPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC----C-CHHHHHHHHHHHHHHHHCCCE
Confidence 456677889999999996 5754332 1 222334578899999999998
No 344
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=22.96 E-value=6.1e+02 Score=23.49 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCC
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTA 93 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA 93 (308)
.+.++..++++..-+.||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 356888899999999999999984
No 345
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.90 E-value=1.7e+02 Score=31.78 Aligned_cols=49 Identities=12% Similarity=-0.035 Sum_probs=38.2
Q ss_pred cccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHH
Q 021767 159 QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKI 209 (308)
Q Consensus 159 ~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 209 (308)
.+|+++|.-|....++.....+++.|..+.+.|+ .|||.+|..+....+
T Consensus 978 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~--~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 978 VLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSK--MIGIISHVPEFRERI 1026 (1042)
T ss_pred CCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCC--EEEEEeCcHHHHHhh
Confidence 6899999988655566556678999999988775 699999997765543
No 346
>PRK15063 isocitrate lyase; Provisional
Probab=22.89 E-value=4e+02 Score=25.78 Aligned_cols=73 Identities=19% Similarity=0.022 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHH--cCCccEEEee-------cCCHHHHHHHHHHH
Q 021767 143 QFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLVRAVGVS-------NYGPNQLVKIHDYL 213 (308)
Q Consensus 143 ~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvS-------n~~~~~l~~~~~~~ 213 (308)
.+.+++++.+.-.. +.|+++++... . +.+++-+..+.++. =+++-..|.| +++.+++..+.+-+
T Consensus 263 Gld~AI~Ra~AYa~--GAD~iw~Et~~---~--d~ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL 335 (428)
T PRK15063 263 GIEQAIARGLAYAP--YADLIWCETST---P--DLEEARRFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQREL 335 (428)
T ss_pred CHHHHHHHHHHHhc--CCCEEEeCCCC---C--CHHHHHHHHHhhcccCccceeecCCCCCcccccccCHHHHHHHHHHH
Confidence 47777887775543 99999999421 1 11222222223322 2334444543 23456677776656
Q ss_pred HHcCCCcee
Q 021767 214 TARGVPLCS 222 (308)
Q Consensus 214 ~~~~~~~~~ 222 (308)
...|+.+.+
T Consensus 336 ~~~Gy~~~~ 344 (428)
T PRK15063 336 GAMGYKFQF 344 (428)
T ss_pred HHcCceEEE
Confidence 666655443
No 347
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.82 E-value=4.9e+02 Score=25.87 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHc-CCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEE
Q 021767 179 ALWNGLVAMYEK-GLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 179 ~~~~~l~~l~~~-G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 252 (308)
+++++|..+++. ++|.-||..|.. ..+..+.+. .+ +++.+..|+-- .+-...+..+++.|+.++.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~l---l~--~~i~~~~~~~~---~e~~~~~~~l~~~G~~~vi 150 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTP-PALRRFQAA---FN--LDIVQRSYVTE---EDARSCVNDLRARGIGAVV 150 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHH---hC--CceEEEEecCH---HHHHHHHHHHHHCCCCEEE
Confidence 478888888774 566667776644 333444333 22 34444444321 2224788999999999986
No 348
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.76 E-value=2e+02 Score=30.70 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCc--ccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHH
Q 021767 147 ACRASLARLQIEQ--IGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQL 206 (308)
Q Consensus 147 ~~e~sL~~L~~d~--iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 206 (308)
++.-+|..+=..+ +|+++|.-|....++.....+.+.|+.+... ++-|||-+|..+-.
T Consensus 827 alrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~ 886 (908)
T COG0419 827 ALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELK 886 (908)
T ss_pred HHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHH
Confidence 3455555555556 9999999886655565556788889998888 88999998876543
No 349
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.53 E-value=5.6e+02 Score=22.85 Aligned_cols=73 Identities=12% Similarity=0.026 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHH--------HHHHHHHcCC-ccEEEeecCCHHHHHHHH
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWN--------GLVAMYEKGL-VRAVGVSNYGPNQLVKIH 210 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~--------~l~~l~~~G~-ir~iGvSn~~~~~l~~~~ 210 (308)
..+.+++-++ .+.++|++++-+|-+-.-...-.+.+...+++ .+..+.+.|. |+.||=-+.=++.+.+.+
T Consensus 47 G~~~l~~i~~-~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iGd~~~Lp~~l~~~i 125 (253)
T PRK14832 47 GARTLKELLR-CCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLRRELAQMHREGVRISFIGDLSALPKSLQTEM 125 (253)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCchhCCHHHHHHH
Confidence 3344444444 44578999999999873221211222222222 2344555543 788885554455555555
Q ss_pred HHH
Q 021767 211 DYL 213 (308)
Q Consensus 211 ~~~ 213 (308)
+.+
T Consensus 126 ~~~ 128 (253)
T PRK14832 126 ERS 128 (253)
T ss_pred HHH
Confidence 444
No 350
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.51 E-value=2.1e+02 Score=23.07 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=49.6
Q ss_pred ccEEEeecCCHHHHH-HHHHHHHHcCCCceeeeeccCcccCC------c-----chhhHHHHH--HHhCCcEEEcccccc
Q 021767 193 VRAVGVSNYGPNQLV-KIHDYLTARGVPLCSAQVQFSLLSMG------E-----NQLEIKNIC--DSLGIRLISYSPLGL 258 (308)
Q Consensus 193 ir~iGvSn~~~~~l~-~~~~~~~~~~~~~~~~Q~~~~~~~~~------~-----~~~~l~~~~--~~~gi~v~a~spl~~ 258 (308)
+...|++..+..++. .+............++++--|=+-+. . .-..+++.+ +..+..|+..+|+..
T Consensus 36 v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~ 115 (191)
T cd01834 36 FRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAY 115 (191)
T ss_pred EEEcccCccchhhhhhhhhcccccCCCCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEECCccc
Confidence 345677777666554 22221111122344555544433321 1 113678888 466888888777653
Q ss_pred cccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCc
Q 021767 259 GMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (308)
Q Consensus 259 G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 304 (308)
..... + .+. ............+.++++|+++++..
T Consensus 116 ~~~~~-------~-~~~---~~~~~~~~~~~n~~l~~~a~~~~~~~ 150 (191)
T cd01834 116 EANED-------P-LPD---GAEYNANLAAYADAVRELAAENGVAF 150 (191)
T ss_pred CCCCC-------C-CCC---hHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 21100 0 000 00112233444567889999988654
No 351
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=22.49 E-value=3.5e+02 Score=24.62 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHHHcCC--CceeeeeccCcccCCcch---hhHHHHHHHhCCcEEE
Q 021767 200 NYGPNQLVKIHDYLTARGV--PLCSAQVQFSLLSMGENQ---LEIKNICDSLGIRLIS 252 (308)
Q Consensus 200 n~~~~~l~~~~~~~~~~~~--~~~~~Q~~~~~~~~~~~~---~~l~~~~~~~gi~v~a 252 (308)
..+.+.+++.++.....+. .+.++-.++||.-..... .++++.|+++|+-++.
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~ 186 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIV 186 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEE
T ss_pred cccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceee
Confidence 4467777766554322221 234444455554332222 3566778888888874
No 352
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=22.48 E-value=2.7e+02 Score=24.63 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHcCCCceeeeeccCcccC------------CcchhhHHHHHHHhCCcEEEcc
Q 021767 201 YGPNQLVKIHDYLTARGVPLCSAQVQFSLLSM------------GENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~------------~~~~~~l~~~~~~~gi~v~a~s 254 (308)
.+.+++.++++..++.++|++++-+....... -+...++++..+++|+.++.+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~ 86 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWI 86 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 35666777777677777777776543322211 1122579999999999987653
No 353
>PLN02590 probable tyrosine decarboxylase
Probab=22.46 E-value=3.4e+02 Score=27.12 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccE-----EEeecCC-HHHHHHHHHHHHHc
Q 021767 143 QFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRA-----VGVSNYG-PNQLVKIHDYLTAR 216 (308)
Q Consensus 143 ~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~-----iGvSn~~-~~~l~~~~~~~~~~ 216 (308)
...-+++++++-||+..-.+..+-........++...+-+++++.+++|++=. .|.++.. .+.|.++.++|++.
T Consensus 237 ~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~ 316 (539)
T PLN02590 237 QTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKY 316 (539)
T ss_pred CchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHh
Confidence 34557788888887765445555422111123455556677777778886543 3444443 45577777777766
Q ss_pred CC
Q 021767 217 GV 218 (308)
Q Consensus 217 ~~ 218 (308)
++
T Consensus 317 g~ 318 (539)
T PLN02590 317 GI 318 (539)
T ss_pred CC
Confidence 64
No 354
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=22.42 E-value=2.2e+02 Score=24.41 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHcCCCcee
Q 021767 72 DSQLQQTFNLAVENGINLFD 91 (308)
Q Consensus 72 ~~~~~~~l~~A~e~Gi~~~D 91 (308)
+|.....++.|++.|...|+
T Consensus 13 pENTl~af~~A~~~Gad~iE 32 (226)
T cd08568 13 PENTLEAFKKAIEYGADGVE 32 (226)
T ss_pred CcchHHHHHHHHHcCcCEEE
Confidence 37778889999999999886
No 355
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=22.29 E-value=1.6e+02 Score=27.42 Aligned_cols=34 Identities=15% Similarity=0.379 Sum_probs=21.0
Q ss_pred eeccCcccCCcch---hhHHHHHHHhCCcEEEccccc
Q 021767 224 QVQFSLLSMGENQ---LEIKNICDSLGIRLISYSPLG 257 (308)
Q Consensus 224 Q~~~~~~~~~~~~---~~l~~~~~~~gi~v~a~spl~ 257 (308)
...||..+....+ .++.+.|+++||.+-.|-...
T Consensus 125 ~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 125 YTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp T-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 3455555433222 389999999999997665554
No 356
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=22.28 E-value=4.3e+02 Score=23.44 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCC------ChhHHHHHHHHHHHHHc-CCccEEEeecCC--------
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYA------PPQELALWNGLVAMYEK-GLVRAVGVSNYG-------- 202 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~------~~~~~~~~~~l~~l~~~-G~ir~iGvSn~~-------- 202 (308)
+.+...++..+... ..+|++ +++.+-....... +.......+.++.+++. |....||+..|.
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~--~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~ 145 (274)
T cd00537 69 DRNRIELQSILLGA-HALGIR--NILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPS 145 (274)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--eEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCC
Confidence 34666666666655 556754 3566642111111 12222345555555554 244578887663
Q ss_pred -HHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCc
Q 021767 203 -PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (308)
Q Consensus 203 -~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~ 249 (308)
..++..+.+..+ .|..+.+-|.-|++- .. .++++.|++.||.
T Consensus 146 ~~~~~~~L~~Ki~-aGA~f~iTQ~~fd~~---~~-~~~~~~~~~~gi~ 188 (274)
T cd00537 146 LEEDIKRLKRKVD-AGADFIITQLFFDND---AF-LRFVDRCRAAGIT 188 (274)
T ss_pred HHHHHHHHHHHHH-CCCCEEeecccccHH---HH-HHHHHHHHHcCCC
Confidence 123455544433 456788889988762 22 3788999999854
No 357
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=22.18 E-value=4.5e+02 Score=21.68 Aligned_cols=66 Identities=11% Similarity=-0.063 Sum_probs=35.7
Q ss_pred HHHcCCccEEEeecCCHHHH-HHHHHHHHHcCCCceeeeeccCcccCCcc-------hhhHHHHHHHhCCcEEE
Q 021767 187 MYEKGLVRAVGVSNYGPNQL-VKIHDYLTARGVPLCSAQVQFSLLSMGEN-------QLEIKNICDSLGIRLIS 252 (308)
Q Consensus 187 l~~~G~ir~iGvSn~~~~~l-~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~-------~~~l~~~~~~~gi~v~a 252 (308)
+.+...|..-|++..+...+ .++.+.+.....+..++++--|=..+... -..+++.++++|+.++.
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~il 113 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLL 113 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 33445677888888876543 33333332223345555665554322111 13578888888877654
No 358
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=22.14 E-value=2.9e+02 Score=22.90 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhC
Q 021767 200 NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLG 247 (308)
Q Consensus 200 n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~g 247 (308)
..+.++++++++.++..|+.-.++-.-|++.+...++ .+-+.+++.|
T Consensus 130 ~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~-~v~eii~e~g 176 (176)
T PF05378_consen 130 PLDEDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQ-RVAEIIREEG 176 (176)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHH-HHHHHHHhcC
Confidence 3455666666666655555544555556665554443 5555555543
No 359
>PRK12999 pyruvate carboxylase; Reviewed
Probab=22.12 E-value=1.1e+03 Score=26.10 Aligned_cols=72 Identities=8% Similarity=-0.074 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHhhCC-CcccEEEecCCCCCCCC-hhHHHHHHHHHHHHHcCCccEEEeecC----CHHHHHHHHHHHH
Q 021767 141 PGQFVNACRASLARLQI-EQIGIGQLHWSTANYAP-PQELALWNGLVAMYEKGLVRAVGVSNY----GPNQLVKIHDYLT 214 (308)
Q Consensus 141 ~~~i~~~~e~sL~~L~~-d~iDl~~lH~~~~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~----~~~~l~~~~~~~~ 214 (308)
.+.++.+++...+. |. -.+-+.+-++..+...+ .+.+.+.+..+++.+.| +..|.++.- ++.++.++++.++
T Consensus 653 ~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G-a~~i~ikDt~G~l~P~~~~~lv~~lk 730 (1146)
T PRK12999 653 VENMRVAIDAVRET-GKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG-AHILAIKDMAGLLKPAAAYELVSALK 730 (1146)
T ss_pred HHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC-CCEEEECCccCCCCHHHHHHHHHHHH
Confidence 45666666666654 42 23444444322111111 23334566667777777 566776653 4666666666554
No 360
>PRK06361 hypothetical protein; Provisional
Probab=21.96 E-value=4.8e+02 Score=21.93 Aligned_cols=183 Identities=15% Similarity=0.063 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHH---HHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 74 QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLL---GKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 74 ~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~l---G~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
...++++.|.+.|+..|=-+++... ..-...+ -+..++..+ ...=+++...=+.. ...+.+ ..+.+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~----~~~~~~~~~~~~~~~~~~~--~~~i~v~~GiE~~~----~~~~~~-~~~~~ 79 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADA----SNLEEILEKLVRAAEELEL--YWDIEVIPGVELTH----VPPKLI-PKLAK 79 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCC----ccHHHHHHHHHHHHHHHhh--cCCCEEEEEEEEcc----cCchhh-chHHH
Confidence 4678999999999999977766542 0011111 111222110 01122333332221 122222 33334
Q ss_pred HHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcc
Q 021767 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLL 230 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~ 230 (308)
.+.+++ +|+..+|..... .+... ..-.++.+.|.+.-+|=-.+ -...+++.+...++.+.++- ...
T Consensus 80 ~~~~~~---~~~~svH~~~~~-~~~~~----~~~~~a~~~~~~dvlaHpd~---~~~~~~~~~~~~~~~lEin~---~~~ 145 (212)
T PRK06361 80 KARDLG---AEIVVVHGETIV-EPVEE----GTNLAAIECEDVDILAHPGL---ITEEEAELAAENGVFLEITA---RKG 145 (212)
T ss_pred HHHHCC---CEEEEECCCCcc-hhhhh----hhHHHHHhCCCCcEecCcch---hhHHHHHHHHHcCeEEEEEC---CCC
Confidence 555554 466789943211 12111 11145778887765552211 11234455665665555542 111
Q ss_pred cCCcchhhHHHHHHHhCCcEEEcccccccccCCCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCcccC
Q 021767 231 SMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQL 307 (308)
Q Consensus 231 ~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqv 307 (308)
..... ..+++.+++.|+.++.-|--.. ++.....+.+.+++++.|.+..+|
T Consensus 146 ~~~~~-~~~l~~a~~~gi~vv~~SDaH~-------------------------~~d~~~~~~~~~i~~~~gl~~~~v 196 (212)
T PRK06361 146 HSLTN-GHVARIAREAGAPLVINTDTHA-------------------------PSDLITYEFARKVALGAGLTEKEL 196 (212)
T ss_pred cccch-HHHHHHHHHhCCcEEEECCCCC-------------------------HHHHHHHHHHHHHHcCCCCCHHHH
Confidence 22222 3799999999999876333321 000112367788888888776654
No 361
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=21.86 E-value=7.4e+02 Score=25.37 Aligned_cols=68 Identities=15% Similarity=0.339 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCccEEEeecCCH--HHHHHHHHHHHHcCCCceeeeeccCcccCCc-------chhhHHHHHHHhCC
Q 021767 178 LALWNGLVAMYEKGLVRAVGVSNYGP--NQLVKIHDYLTARGVPLCSAQVQFSLLSMGE-------NQLEIKNICDSLGI 248 (308)
Q Consensus 178 ~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~-------~~~~l~~~~~~~gi 248 (308)
..+.+.+..|++.|- .|++.+|+. ..+..+.. .+++.+-+.-+.+..-. .-..++.+|++.||
T Consensus 678 ~~~~~~l~~l~~~G~--~i~ld~fg~~~~~~~~l~~------l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 749 (799)
T PRK11359 678 TEIFKRIQILRDMGV--GLSVDDFGTGFSGLSRLVS------LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNL 749 (799)
T ss_pred HHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHhh------CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCC
Confidence 346778899999997 788888753 33333322 56777777665543211 11368899999999
Q ss_pred cEEEc
Q 021767 249 RLISY 253 (308)
Q Consensus 249 ~v~a~ 253 (308)
.+++-
T Consensus 750 ~via~ 754 (799)
T PRK11359 750 TVVAE 754 (799)
T ss_pred eEEEE
Confidence 99874
No 362
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=21.84 E-value=5.7e+02 Score=22.74 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHH--HHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHH
Q 021767 73 SQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKL--LGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (308)
Q Consensus 73 ~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~--lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~ 150 (308)
+...+.++..-+.|+.+|..++.=+. +..+.. +++.|++.. .-+.+ -.+.. .+.++..++..+..
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~----~~~~~t~~~a~~l~~~~-----g~~~i--~Hlt~--r~~n~~~l~~~L~~ 81 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGG----STRDRTVRIVRRIKKET-----GIPTV--PHLTC--IGATREEIREILRE 81 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCC----CcHHHHHHHHHHHHHhc-----CCCee--EEeee--cCCCHHHHHHHHHH
Confidence 55666667767788999998876553 222333 344454310 11111 11111 13466777777764
Q ss_pred HHHhhCCCcccEEEecCCCC-CC--C-ChhHHHHHHHHHHHHHcCCccEEEeecCCH---------HHHHHHHHHHHHcC
Q 021767 151 SLARLQIEQIGIGQLHWSTA-NY--A-PPQELALWNGLVAMYEKGLVRAVGVSNYGP---------NQLVKIHDYLTARG 217 (308)
Q Consensus 151 sL~~L~~d~iDl~~lH~~~~-~~--~-~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~---------~~l~~~~~~~~~~~ 217 (308)
. ..+|++. ++.|-.... .. . ........+-++.+++..---+||++.|.- .++..+.+..+ .|
T Consensus 82 ~-~~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~-aG 157 (272)
T TIGR00676 82 Y-RELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVD-AG 157 (272)
T ss_pred H-HHCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHH-cC
Confidence 4 6777543 344442111 10 0 001112444455555542235788887532 23454544332 45
Q ss_pred CCceeeeeccCcccCCcchhhHHHHHHHhCCcE
Q 021767 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIRL 250 (308)
Q Consensus 218 ~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v 250 (308)
..+.+-|.-|++- .. .++++.|++.||.+
T Consensus 158 A~f~iTQ~~fd~~---~~-~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 158 ADYAITQLFFDND---DY-YRFVDRCRAAGIDV 186 (272)
T ss_pred CCeEeeccccCHH---HH-HHHHHHHHHcCCCC
Confidence 5677888888762 22 27889999998764
No 363
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=21.79 E-value=5.5e+02 Score=22.52 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHH
Q 021767 68 QESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNA 147 (308)
Q Consensus 68 ~~~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~ 147 (308)
...++++..++++.|.+.|+.-+-..+.|-. ...++|++ . ..+.|+|=++ .|...++-.++-.
T Consensus 19 ~~~T~~~I~~l~~eA~~~~f~avCV~P~~V~---------~A~~~l~g------~-~~~~v~tVig-FP~G~~~t~~K~~ 81 (228)
T COG0274 19 PDATEEDIARLCAEAKEYGFAAVCVNPSYVP---------LAKEALKG------S-TVVRVCTVIG-FPLGANTTAVKAA 81 (228)
T ss_pred CCCCHHHHHHHHHHHHhhCceEEEECcchHH---------HHHHHhcc------C-CCeEEEEecC-CCCCCChHHHHHH
Q ss_pred HHHHHHhhCCCcccEEE
Q 021767 148 CRASLARLQIEQIGIGQ 164 (308)
Q Consensus 148 ~e~sL~~L~~d~iDl~~ 164 (308)
--+-.-.-|-|-||++.
T Consensus 82 Ea~~ai~~GAdEiDmVi 98 (228)
T COG0274 82 EAREAIENGADEIDMVI 98 (228)
T ss_pred HHHHHHHcCCCeeeeee
No 364
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=21.72 E-value=3.8e+02 Score=20.68 Aligned_cols=64 Identities=9% Similarity=-0.025 Sum_probs=39.8
Q ss_pred CCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCC--CcccEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 021767 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI--EQIGIGQLHWSTANYAPPQELALWNGLVAMYE 189 (308)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~--d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~ 189 (308)
.|=.+.|+-|++.. ...++.+++.+.++++.... .-.|++++..+... ..+..++.+.|..|.+
T Consensus 44 ~R~G~~VsKK~~~~--AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~--~~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 44 PRLGLVVGKKTAKR--AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFD--RATAKQAVAELAQLMA 109 (120)
T ss_pred ceEEEEEecccCcc--hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcc--cCCHHHHHHHHHHHHH
Confidence 56678888886432 23678888888888865432 34699999987433 2233345555555443
No 365
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=21.68 E-value=6.5e+02 Score=23.33 Aligned_cols=117 Identities=9% Similarity=0.055 Sum_probs=63.0
Q ss_pred CCCCCEEEEeccCCCCC-------CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCc
Q 021767 121 QVQNNIVIATKFAAYPW-------RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV 193 (308)
Q Consensus 121 ~~R~~v~i~tK~~~~~~-------~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~i 193 (308)
..|+++-++|+++.... ..+. .+.+.+-+.+++.| -+..+|.. ++ +. ......+.+..|++
T Consensus 20 ~s~~dvdlst~~~~~~l~~P~~inAM~t-~iN~~LA~~a~~~G----~~~~~~k~----~~-e~--~~~~~r~~~~~~l~ 87 (326)
T PRK05458 20 NSRSECDTSVTLGPRTFKLPVVPANMQT-IIDEKIAEWLAENG----YFYIMHRF----DP-EA--RIPFIKDMHEQGLI 87 (326)
T ss_pred CCHHHcccceEECCcEecCcEEEecccc-hhHHHHHHHHHHcC----CEEEEecC----CH-HH--HHHHHHhccccccE
Confidence 57888999998864321 1233 67777888888876 35677842 11 11 12222444455665
Q ss_pred cEEEeecCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHh--CCcEEE
Q 021767 194 RAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSL--GIRLIS 252 (308)
Q Consensus 194 r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~--gi~v~a 252 (308)
-.+++.. +.+.++++.+..+ .+..++++++....-+....+ +++...+++ ++.+++
T Consensus 88 v~~~vg~-~~~~~~~~~~Lv~-ag~~~d~i~iD~a~gh~~~~~-e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 88 ASISVGV-KDDEYDFVDQLAA-EGLTPEYITIDIAHGHSDSVI-NMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEEecC-CHHHHHHHHHHHh-cCCCCCEEEEECCCCchHHHH-HHHHHHHhhCCCCeEEE
Confidence 4444433 4566666655433 233357777755543322222 555555554 355555
No 366
>PRK10060 RNase II stability modulator; Provisional
Probab=21.66 E-value=7.6e+02 Score=25.11 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCccEEEeecCC--HHHHHHHHHHHHHcCCCceeeeeccCcccCC---cc----hhhHHHHHHHhCC
Q 021767 178 LALWNGLVAMYEKGLVRAVGVSNYG--PNQLVKIHDYLTARGVPLCSAQVQFSLLSMG---EN----QLEIKNICDSLGI 248 (308)
Q Consensus 178 ~~~~~~l~~l~~~G~ir~iGvSn~~--~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~---~~----~~~l~~~~~~~gi 248 (308)
..+.+.+.+|++.|- .|.+.+|+ ...+..+.. .+++.+-+.-+.+..- .. -..++..|++.|+
T Consensus 541 ~~~~~~l~~L~~~G~--~ialDdfGtg~ssl~~L~~------l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~ 612 (663)
T PRK10060 541 ELALSVIQQFSQLGA--QVHLDDFGTGYSSLSQLAR------FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNL 612 (663)
T ss_pred HHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHh------CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCC
Confidence 346788999999997 67787775 344444433 5788887765544321 11 1367999999999
Q ss_pred cEEEc
Q 021767 249 RLISY 253 (308)
Q Consensus 249 ~v~a~ 253 (308)
.++|-
T Consensus 613 ~viAe 617 (663)
T PRK10060 613 QVIAE 617 (663)
T ss_pred cEEEe
Confidence 99873
No 367
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.43 E-value=5.9e+02 Score=22.74 Aligned_cols=110 Identities=9% Similarity=0.041 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHH---HHHHHHHHHHHcCC-ccEEEeecCCHHHHHHHHHHH
Q 021767 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQEL---ALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYL 213 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~---~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~ 213 (308)
.++.+.+++-++..++ -| +|=+++-....+...+..+ .+.+...+.. .|+ --.+|++..+.++..+..+.+
T Consensus 18 ~iD~~~l~~~i~~l~~-~G---v~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~gv~~~~~~~~i~~a~~a 92 (292)
T PRK03170 18 SVDFAALRKLVDYLIA-NG---TDGLVVVGTTGESPTLTHEEHEELIRAVVEAV-NGRVPVIAGTGSNSTAEAIELTKFA 92 (292)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECCcCCccccCCHHHHHHHHHHHHHHh-CCCCcEEeecCCchHHHHHHHHHHH
Confidence 4577788887777666 44 4555554332232223222 3444333333 343 234788877777777777777
Q ss_pred HHcCCCceeeeeccCcccCCcchhhHHHHH----HHhCCcEEEccc
Q 021767 214 TARGVPLCSAQVQFSLLSMGENQLEIKNIC----DSLGIRLISYSP 255 (308)
Q Consensus 214 ~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~----~~~gi~v~a~sp 255 (308)
...|..-.++..++-.. ..+.++++++ ..-++.++.|..
T Consensus 93 ~~~G~d~v~~~pP~~~~---~~~~~i~~~~~~ia~~~~~pv~lYn~ 135 (292)
T PRK03170 93 EKAGADGALVVTPYYNK---PTQEGLYQHFKAIAEATDLPIILYNV 135 (292)
T ss_pred HHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 77776544444443221 2233565544 445788888753
No 368
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.43 E-value=5.7e+02 Score=23.22 Aligned_cols=21 Identities=5% Similarity=0.088 Sum_probs=12.3
Q ss_pred ccEEEeecCCHHHHHHHHHHH
Q 021767 193 VRAVGVSNYGPNQLVKIHDYL 213 (308)
Q Consensus 193 ir~iGvSn~~~~~l~~~~~~~ 213 (308)
+-+|++-|++++++.++.+.+
T Consensus 217 aD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 217 ADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred CCEEEECCCCHHHHHHHHHHH
Confidence 456666666666666655543
No 369
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.40 E-value=1.1e+02 Score=20.49 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=9.4
Q ss_pred hHHHHHHHhCCcEEE
Q 021767 238 EIKNICDSLGIRLIS 252 (308)
Q Consensus 238 ~l~~~~~~~gi~v~a 252 (308)
++++.|+++|+..++
T Consensus 19 ~~~~~a~~~g~~~v~ 33 (67)
T smart00481 19 ELVKRAKELGLKAIA 33 (67)
T ss_pred HHHHHHHHcCCCEEE
Confidence 566666666666654
No 370
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=21.38 E-value=6.1e+02 Score=22.89 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHhh---CCCcccEEEecCCCCC--CCChh-HHHHHHHHHHHHHcCCccE-EEee---cCCHHHHHHH
Q 021767 140 TPGQFVNACRASLARL---QIEQIGIGQLHWSTAN--YAPPQ-ELALWNGLVAMYEKGLVRA-VGVS---NYGPNQLVKI 209 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L---~~d~iDl~~lH~~~~~--~~~~~-~~~~~~~l~~l~~~G~ir~-iGvS---n~~~~~l~~~ 209 (308)
+++.++......++++ ||.|+|+.+-...... .+..+ ...+.+++++.+++-.|+. +.++ +.+.+.+.+.
T Consensus 67 ~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~~ 146 (325)
T cd01320 67 TEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQET 146 (325)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHHH
Confidence 5667766666665544 7778886533211111 11111 1223556666665543432 2222 2344556555
Q ss_pred HHHHHHcCCCceeeeeccCcccCCc---chhhHHHHHHHhCCcEEEc
Q 021767 210 HDYLTARGVPLCSAQVQFSLLSMGE---NQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 210 ~~~~~~~~~~~~~~Q~~~~~~~~~~---~~~~l~~~~~~~gi~v~a~ 253 (308)
++.+...... .++-+.+..-.... .-..+++.|+++|+.+...
T Consensus 147 ~~~~~~~~~~-~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H 192 (325)
T cd01320 147 LELALKYRDK-GVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAH 192 (325)
T ss_pred HHHHHhccCC-CEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEe
Confidence 5544322111 12333322111110 1136788888888777554
No 371
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=21.30 E-value=3e+02 Score=24.42 Aligned_cols=70 Identities=7% Similarity=-0.056 Sum_probs=45.6
Q ss_pred HHHHHHHcCCccEEEee-cCCHHHHHHHHHHHHHcCCCceeeeeccCcccCCcchhhHHHHHHHhCCcEEEccccc
Q 021767 183 GLVAMYEKGLVRAVGVS-NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLG 257 (308)
Q Consensus 183 ~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 257 (308)
.|.+-.++|+. -+|+- ......+.++. ...|+++.++-.|..+++..... .++..|+..|+..++.-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~---a~~G~D~v~iD~EHg~~~~~~~~-~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVL---GLAGFDWLVLDGEHAPNDVSTFI-PQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHH---HhcCCCEEEEccccCCCCHHHHH-HHHHHHhhcCCCcEEECCCC
Confidence 35555556875 35543 33333344433 34667888888899988765544 78889999999988776544
No 372
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=21.28 E-value=6e+02 Score=24.91 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=50.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCC--ceeeeeccC-----cccCC----c-
Q 021767 167 WSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVP--LCSAQVQFS-----LLSMG----E- 234 (308)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~--~~~~Q~~~~-----~~~~~----~- 234 (308)
.||..-+.+.+. ++-.=-..+.+|-||.=+-..|....+.++.+ +.|+. -++.|.+|+ ++|.. .
T Consensus 20 HPDAGKTTlTEk-LLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEk---qRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFS 95 (528)
T COG4108 20 HPDAGKTTLTEK-LLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEK---QRGISVTSSVMQFDYADCLVNLLDTPGHEDFS 95 (528)
T ss_pred cCCCCcccHHHH-HHHhcchhhhcceeeeccCCcccccHHHHHHH---hcCceEEeeEEEeccCCeEEeccCCCCccccc
Confidence 366554444431 22222345677888888888887666665544 46653 456788875 33321 0
Q ss_pred -------------------------chhhHHHHHHHhCCcEEE
Q 021767 235 -------------------------NQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 235 -------------------------~~~~l~~~~~~~gi~v~a 252 (308)
....|++.|+-+||.|+.
T Consensus 96 EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~T 138 (528)
T COG4108 96 EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFT 138 (528)
T ss_pred hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEE
Confidence 114689999999999987
No 373
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=21.27 E-value=2.5e+02 Score=26.84 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccCcccC------C----cchhhHHHHHHHhCCcEEEcc
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFSLLSM------G----ENQLEIKNICDSLGIRLISYS 254 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~------~----~~~~~l~~~~~~~gi~v~a~s 254 (308)
+.+.+.++++..+..++|++++.+....... . +...++++.++++|+.++.+.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~ 103 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFPDPKQMIDELHDQGIKVVLWV 103 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccccccccccccccccchHHHHHhHhhCCcEEEEEe
Confidence 4556666666666666777776655333221 0 122467777788887776543
No 374
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.27 E-value=4.9e+02 Score=23.10 Aligned_cols=83 Identities=11% Similarity=0.177 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCC---CCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHH
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTG---RLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNA 147 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~---~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~ 147 (308)
+.++..+..+.+.+.|+..||.--...+. ...+...+.+.+.++...+ .-++-|..|+... .+.+.+.+-
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~----~~~~pv~vKl~~~---~~~~~~~~~ 181 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKA----AVDIPLLVKLSPY---FDLEDIVEL 181 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHH----ccCCCEEEEeCCC---CCHHHHHHH
Confidence 45677888888888899888854322210 0112234555555554210 1156678888642 344455444
Q ss_pred HHHHHHhhCCCccc
Q 021767 148 CRASLARLQIEQIG 161 (308)
Q Consensus 148 ~e~sL~~L~~d~iD 161 (308)
++ .|++.|.|.|.
T Consensus 182 a~-~l~~~Gad~i~ 194 (289)
T cd02810 182 AK-AAERAGADGLT 194 (289)
T ss_pred HH-HHHHcCCCEEE
Confidence 44 45567754444
No 375
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.18 E-value=5.4e+02 Score=22.16 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEecc
Q 021767 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKF 132 (308)
Q Consensus 70 ~~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~ 132 (308)
.+.+++.++++..++.|++.+.-.-.... +.+.+.+.-+++ ++--+-.-|++
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~------~~~~I~~l~~~~-----p~~~IGAGTVl 75 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPA------ALEAIRLIAKEV-----PEALIGAGTVL 75 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcc------HHHHHHHHHHHC-----CCCEEEEeecc
Confidence 45689999999999999999998844333 566665554443 33334455555
No 376
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=21.17 E-value=6.6e+02 Score=23.23 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCceeCCcCCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHHHHHHHHHHHhhCC
Q 021767 78 TFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI 157 (308)
Q Consensus 78 ~l~~A~e~Gi~~~DtA~~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~~e~sL~~L~~ 157 (308)
..+.|.++|+..+|--...|. ++.++|.... ..|.+= .|..-. -...-+.+-++...+..+.
T Consensus 146 AA~ra~~aGfDgVeih~ahGy---------Ll~qFlsp~~---N~RtD~-----yGGsle-nR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 146 AARRCQAGGLDGVELQAAHGH---------LIDQFLSPLT---NRRTDE-----YGGSLE-NRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred HHHHHHHcCCCEEEEccccch---------HHHHhhCCCc---CCCCCc-----CCCCHH-HHhHHHHHHHHHHHHHcCC
Confidence 334566789999986655554 5666665422 123211 111100 0123344445555555554
Q ss_pred CcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeec
Q 021767 158 EQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN 200 (308)
Q Consensus 158 d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 200 (308)
+..=-+=|-+.+......+.++..+.+..|.+.|.+.+|=||.
T Consensus 208 ~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 208 DFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred CCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 4321111221111111123344566666777777677776653
No 377
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.16 E-value=5.8e+02 Score=22.53 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEeecC----CHHHHHHHHHHHHHcCCCceeeeeccCcccCC-cchhhHHHHHHHhCCcEE
Q 021767 177 ELALWNGLVAMYEKGLVRAVGVSNY----GPNQLVKIHDYLTARGVPLCSAQVQFSLLSMG-ENQLEIKNICDSLGIRLI 251 (308)
Q Consensus 177 ~~~~~~~l~~l~~~G~ir~iGvSn~----~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~-~~~~~l~~~~~~~gi~v~ 251 (308)
.+.+.+..+++.+.| +..|.++.- +|.++.++++.++..-.++ -+.+.+|.-+.. ..-...+..+ +.|+..+
T Consensus 142 ~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~-~i~l~~H~Hn~~GlA~An~laAi-~aG~~~i 218 (268)
T cd07940 142 LDFLIEVVEAAIEAG-ATTINIPDTVGYLTPEEFGELIKKLKENVPNI-KVPISVHCHNDLGLAVANSLAAV-EAGARQV 218 (268)
T ss_pred HHHHHHHHHHHHHcC-CCEEEECCCCCCCCHHHHHHHHHHHHHhCCCC-ceeEEEEecCCcchHHHHHHHHH-HhCCCEE
Confidence 344677777888887 677888764 6888888887765432111 123444442221 1111334444 6799998
Q ss_pred EcccccccccCCC
Q 021767 252 SYSPLGLGMLTGK 264 (308)
Q Consensus 252 a~spl~~G~L~~~ 264 (308)
--+-.+.|--+|+
T Consensus 219 D~s~~GlG~~aGN 231 (268)
T cd07940 219 ECTINGIGERAGN 231 (268)
T ss_pred EEEeecccccccc
Confidence 7777777654554
No 378
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=21.15 E-value=6.6e+02 Score=23.22 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=18.4
Q ss_pred CCcHHHHHHHH-------HHHHHcCCCceeCCcCCCC
Q 021767 69 ESMDSQLQQTF-------NLAVENGINLFDTADSYGT 98 (308)
Q Consensus 69 ~~~~~~~~~~l-------~~A~e~Gi~~~DtA~~Yg~ 98 (308)
+++.++..+++ +.|.++|+..++.-..+|.
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGy 177 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGY 177 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch
Confidence 34555544444 4566789999987555543
No 379
>PLN02428 lipoic acid synthase
Probab=21.12 E-value=6.9e+02 Score=23.42 Aligned_cols=168 Identities=13% Similarity=0.135 Sum_probs=85.2
Q ss_pred CCcHHHHHHHHHHHHHcCCCceeCCc----CCCCCCCCCchHHHHHHHHhhCCCCCCCCCCEEEEeccCCCCCCCChHHH
Q 021767 69 ESMDSQLQQTFNLAVENGINLFDTAD----SYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQF 144 (308)
Q Consensus 69 ~~~~~~~~~~l~~A~e~Gi~~~DtA~----~Yg~~~~~g~sE~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i 144 (308)
..+.++..++.+.+.+.|++++=... .|.+ +.++ .+.+.++...+ .--.+.|..=. ..+..+
T Consensus 129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D----~ga~-~~~elir~Ir~---~~P~i~Ie~L~--pdf~~d---- 194 (349)
T PLN02428 129 PPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPD----GGSG-HFAETVRRLKQ---LKPEILVEALV--PDFRGD---- 194 (349)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCc----ccHH-HHHHHHHHHHH---hCCCcEEEEeC--ccccCC----
Confidence 34556677788888888987652221 2222 2223 34444444210 00123333311 111111
Q ss_pred HHHHHHHHHhhCCCcccEEEecCCCCC------C--CChhHHHHHHHHHHHHHc--CCcc-E---EEeecCCHHHHHHHH
Q 021767 145 VNACRASLARLQIEQIGIGQLHWSTAN------Y--APPQELALWNGLVAMYEK--GLVR-A---VGVSNYGPNQLVKIH 210 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~iDl~~lH~~~~~------~--~~~~~~~~~~~l~~l~~~--G~ir-~---iGvSn~~~~~l~~~~ 210 (308)
++.|++|.---+|.+ -|.++.. . .....++.++.++.+++. |..- . +|+ .=+.+++.+.+
T Consensus 195 ----~elL~~L~eAG~d~i-~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l 268 (349)
T PLN02428 195 ----LGAVETVATSGLDVF-AHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTM 268 (349)
T ss_pred ----HHHHHHHHHcCCCEE-ccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHH
Confidence 333444433336663 3555421 0 112456688999999998 7643 3 345 34677788877
Q ss_pred HHHHHcCCCceeeee-cc---Cccc----CCc---chhhHHHHHHHhCCcEEEcccccc
Q 021767 211 DYLTARGVPLCSAQV-QF---SLLS----MGE---NQLEIKNICDSLGIRLISYSPLGL 258 (308)
Q Consensus 211 ~~~~~~~~~~~~~Q~-~~---~~~~----~~~---~~~~l~~~~~~~gi~v~a~spl~~ 258 (308)
+.++..++. ++.+ +| +..+ +.. +-..+-+++.+.|...++.+||-.
T Consensus 269 ~~Lrelgvd--~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 269 EDLRAAGVD--VVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCC--EEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 777765543 3322 22 1111 111 113567778888888888888764
No 380
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=21.01 E-value=5e+02 Score=21.74 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=24.7
Q ss_pred cccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHH
Q 021767 159 QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQL 206 (308)
Q Consensus 159 ~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 206 (308)
.+|.++||..+ +. +..+.+.+......|+.||+++++..++
T Consensus 73 ~~d~Vqlhg~e----~~---~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDE----SP---EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCC----CH---HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 36889999542 21 1234444333356799999998765443
No 381
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=21.00 E-value=6.4e+02 Score=22.95 Aligned_cols=83 Identities=14% Similarity=0.242 Sum_probs=51.0
Q ss_pred CCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCC-HHHHHHHHHHHHHcCCCceeeeeccCcccCCc
Q 021767 156 QIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYG-PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGE 234 (308)
Q Consensus 156 ~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~-~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~ 234 (308)
|+..+.+ +.|-|.+....+ .++.+. ..+++.||-+|=.--|+ .+.+..+++.+...++++-+ ++++..
T Consensus 117 g~Tr~~v-y~qPp~~~~p~I--KE~vR~--~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYi------LLD~~~ 185 (284)
T PF07894_consen 117 GVTRATV-YFQPPKDGQPHI--KEVVRR--MIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYI------LLDEQN 185 (284)
T ss_pred CCceEEE-EeCCCCCCCCCH--HHHHHH--HHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEE------Eechhc
Confidence 5556653 445443332222 223332 24567788777777776 77888998887677775433 344444
Q ss_pred chhhHHHHHHHhCCcE
Q 021767 235 NQLEIKNICDSLGIRL 250 (308)
Q Consensus 235 ~~~~l~~~~~~~gi~v 250 (308)
.. ..++.|.+.+|..
T Consensus 186 ~~-~Fl~Mc~~~~v~~ 200 (284)
T PF07894_consen 186 LP-HFLEMCEKLGVNL 200 (284)
T ss_pred Ch-HHHHHHHHCCCCh
Confidence 43 7899999988765
No 382
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.97 E-value=4.5e+02 Score=21.14 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=50.5
Q ss_pred CCccEEEeecCCHHHH-HHHHHHHHHcCCCceeeeeccCcccCC--cc-----hhhHHHHHHHhCCcEEEcccccccccC
Q 021767 191 GLVRAVGVSNYGPNQL-VKIHDYLTARGVPLCSAQVQFSLLSMG--EN-----QLEIKNICDSLGIRLISYSPLGLGMLT 262 (308)
Q Consensus 191 G~ir~iGvSn~~~~~l-~~~~~~~~~~~~~~~~~Q~~~~~~~~~--~~-----~~~l~~~~~~~gi~v~a~spl~~G~L~ 262 (308)
-.|-..|++..+..++ .++.+..........++++--|=.... .. -..+++.+++.+..++...|.-...
T Consensus 32 ~~v~n~g~~G~~~~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~-- 109 (183)
T cd04501 32 KEVINRGINGDTTSQMLVRFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDD-- 109 (183)
T ss_pred CeEEecCcCCccHHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCc--
Confidence 3455667887776553 333322222223344455533322211 11 1368899999998877654443210
Q ss_pred CCCCCCCCCCCchhhhhhccccChHHHHHHHHHHHHHhCCCcc
Q 021767 263 GKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIP 305 (308)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~a 305 (308)
..+. +. +....+.....-+.++++|++.++...
T Consensus 110 ~~~~----~~------~~~~~~~~~~~n~~~~~~a~~~~v~~v 142 (183)
T cd04501 110 YPWK----PQ------WLRPANKLKSLNRWLKDYARENGLLFL 142 (183)
T ss_pred cccc----hh------hcchHHHHHHHHHHHHHHHHHcCCCEE
Confidence 0000 00 000112333444688999999887643
No 383
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.88 E-value=5.9e+02 Score=22.50 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=35.9
Q ss_pred CcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHH
Q 021767 158 EQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQL 206 (308)
Q Consensus 158 d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 206 (308)
...+++++..|....++.....+++.|.+++++|. .|=+++|..+.+
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~--til~~tH~~~~~ 199 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK--TIVYITHNLEEL 199 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC--EEEEEecCHHHH
Confidence 35688999888666666556678999999988775 577888888765
No 384
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=20.82 E-value=7.7e+02 Score=25.25 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=55.9
Q ss_pred ceeCCcCCCCCC-CCCchHH-HHHHHHhhCCCCCCCCCCEEEEeccCCCC---------CCCCh----HHHHHHHHHHHH
Q 021767 89 LFDTADSYGTGR-LNGKSEK-LLGKFISEIPGQKQVQNNIVIATKFAAYP---------WRLTP----GQFVNACRASLA 153 (308)
Q Consensus 89 ~~DtA~~Yg~~~-~~g~sE~-~lG~~L~~~~~~~~~R~~v~i~tK~~~~~---------~~~~~----~~i~~~~e~sL~ 153 (308)
++.|+..|.++. +.|+.-. ++...+.++.+ ..-.+++..+-.-.+. .+.++ +...+.+.+.++
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r--~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQR--MRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHH--hcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 677888888765 5565443 33444433211 1234555555432110 12233 445677888999
Q ss_pred hhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCcc
Q 021767 154 RLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR 194 (308)
Q Consensus 154 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir 194 (308)
+||+++ |.+.-. ..+.-...+.+.+.+|+++|.|=
T Consensus 83 ~l~i~~-d~f~rt-----t~~~h~~~v~~~~~~L~~~G~iy 117 (673)
T PRK00133 83 GFGISF-DNYGST-----HSEENRELAQEIYLKLKENGYIY 117 (673)
T ss_pred HhCCCC-CCCccC-----CcHHHHHHHHHHHHHHHHCCCEE
Confidence 999974 743211 12223345889999999999864
No 385
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=20.70 E-value=4.2e+02 Score=20.76 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHHHH---hhCCCcccEE------EecCCCCCCCChhHHHHHHHHHHHHHcC---CccEEEeec
Q 021767 138 RLTPGQFVNACRASLA---RLQIEQIGIG------QLHWSTANYAPPQELALWNGLVAMYEKG---LVRAVGVSN 200 (308)
Q Consensus 138 ~~~~~~i~~~~e~sL~---~L~~d~iDl~------~lH~~~~~~~~~~~~~~~~~l~~l~~~G---~ir~iGvSn 200 (308)
.++-+.+.++|+-.|. ..|++|.|-= +.-|-.+.+...+..+++.+|++++.+- .||-||+-+
T Consensus 18 ~Ltd~qi~~QVrylL~QGykigvE~~d~rrprtgsWt~wg~p~f~~~~~~evlaele~Cr~dhp~eYIRliGfDp 92 (127)
T COG4451 18 PLTDEQIAEQVRYLLSQGYKIGVEYVDDRRPRTGSWTMWGTPMFGAKTAGEVLAELEACRADHPGEYIRLIGFDP 92 (127)
T ss_pred cCcHHHHHHHHHHHHhCCcccceeecccCCcccceeeecCCccccccchHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 4567889999999886 5688888852 1112111122234567888888888765 477777744
No 386
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.63 E-value=7.5e+02 Score=23.66 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhC
Q 021767 287 KPLLRSLKEIAERRG 301 (308)
Q Consensus 287 ~~~~~~l~~ia~~~g 301 (308)
.+..+.++++.++++
T Consensus 230 ~e~~~~v~~~~~~~~ 244 (404)
T TIGR03278 230 SEFKNIVRETHKEFP 244 (404)
T ss_pred HHHHHHHHHHHHHhC
Confidence 344455577777776
No 387
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.54 E-value=3.2e+02 Score=20.52 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=6.9
Q ss_pred HcCCccEEEeecC
Q 021767 189 EKGLVRAVGVSNY 201 (308)
Q Consensus 189 ~~G~ir~iGvSn~ 201 (308)
.+.+...||+|..
T Consensus 47 ~~~~pdvV~iS~~ 59 (119)
T cd02067 47 KEEDADAIGLSGL 59 (119)
T ss_pred HHcCCCEEEEecc
Confidence 3445556666543
No 388
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=20.45 E-value=3e+02 Score=25.54 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHcCCCceeeeeccCcccCC----------cchhhHHHHHHHhCCcEEE
Q 021767 202 GPNQLVKIHDYLTARGVPLCSAQVQFSLLSMG----------ENQLEIKNICDSLGIRLIS 252 (308)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~----------~~~~~l~~~~~~~gi~v~a 252 (308)
+.+++.++++..++.++|++++.+.+...+.. +...++++..+++|+.++.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~ 82 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPNPKEMFDNLHNKGLKCST 82 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCCHHHHHHHHHHCCCeEEE
Confidence 56777777777788888888887765433211 1225799999999998764
No 389
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=20.41 E-value=5.3e+02 Score=24.98 Aligned_cols=63 Identities=6% Similarity=-0.158 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHH
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYL 213 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 213 (308)
+.....+++.++|+.||+++ |=.+ .......-..+.+++|.++|++= .|..+.+++++..+..
T Consensus 46 ~~~e~~~~I~~~L~WlGl~w-De~y-------~QSeR~~~Y~~~a~~Li~~G~AY---~C~cs~eel~~~r~~~ 108 (433)
T PRK12410 46 NIEGKDKEILEILNLFGISW-DKLV-------YQSENLKFHRQMAEKLLSEKKAF---ACFCSEEELEAKKEKA 108 (433)
T ss_pred CChHHHHHHHHHHHHcCCCC-CCCe-------ehhccHHHHHHHHHHHHHcCCee---eecCCHHHHHHHHHHH
Confidence 55667788999999999987 6221 12222334678899999999863 3444778887765543
No 390
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.41 E-value=3.3e+02 Score=24.43 Aligned_cols=98 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHHHHHHHcCCCceeee
Q 021767 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQ 224 (308)
Q Consensus 145 ~~~~e~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q 224 (308)
+..+-+.|.++|+++|++-..-.|.....--+.+++.+.+.... .++..+++ -+...++.+++. .++.+.
T Consensus 22 K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~---~~~~~~~~-~~~~dv~~A~~~------g~~~i~ 91 (274)
T cd07938 22 KIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRP---GVRYSALV-PNLRGAERALAA------GVDEVA 91 (274)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCC---CCEEEEEC-CCHHHHHHHHHc------CcCEEE
Q ss_pred eccCcccC--------------CcchhhHHHHHHHhCCcEEEc
Q 021767 225 VQFSLLSM--------------GENQLEIKNICDSLGIRLISY 253 (308)
Q Consensus 225 ~~~~~~~~--------------~~~~~~l~~~~~~~gi~v~a~ 253 (308)
+..+.-+. .... +.+++++++|+.+...
T Consensus 92 i~~~~Sd~~~~~~~~~s~~~~~~~~~-~~v~~ak~~G~~v~~~ 133 (274)
T cd07938 92 VFVSASETFSQKNINCSIAESLERFE-PVAELAKAAGLRVRGY 133 (274)
T ss_pred EEEecCHHHHHHHcCCCHHHHHHHHH-HHHHHHHHCCCeEEEE
No 391
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=20.31 E-value=5.2e+02 Score=22.01 Aligned_cols=48 Identities=23% Similarity=0.111 Sum_probs=27.9
Q ss_pred HhhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHc-CCccEEEeec
Q 021767 153 ARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK-GLVRAVGVSN 200 (308)
Q Consensus 153 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvSn 200 (308)
.+.|++.=|+++==-......+....++++.++.+++. |...-+|+|+
T Consensus 157 ~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~~~~~~~~p~l~~~sr 205 (210)
T PF00809_consen 157 EKAGIPRERIILDPGIGFGKDPEQNLELLRNIEELKELFGYPILVGGSR 205 (210)
T ss_dssp HHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHTTSSSEBEEEETT
T ss_pred HHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 34788765554422112211222344678888888888 9999998874
No 392
>TIGR00035 asp_race aspartate racemase.
Probab=20.25 E-value=5.6e+02 Score=22.01 Aligned_cols=66 Identities=11% Similarity=-0.004 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHhhCCCcccEEEecCCCCCC---------CChhHHHHHHHHHHHHHcCCccEEEeecCCHHHH
Q 021767 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANY---------APPQELALWNGLVAMYEKGLVRAVGVSNYGPNQL 206 (308)
Q Consensus 140 ~~~~i~~~~e~sL~~L~~d~iDl~~lH~~~~~~---------~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 206 (308)
+.+.+++-++..-.+.+-++++++.++.|+... .+.-...+.+.++.|.+.| +..|-++..+...+
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 556667777777778888999999999884210 0101123566777777665 79999998887663
No 393
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=20.14 E-value=4.9e+02 Score=26.48 Aligned_cols=100 Identities=10% Similarity=0.059 Sum_probs=54.7
Q ss_pred ceeCCcCCCCCC-CCCchH-HHHHHHHhhCCCCCCCCCCEEEEeccCCCC---------CCC----ChHHHHHHHHHHHH
Q 021767 89 LFDTADSYGTGR-LNGKSE-KLLGKFISEIPGQKQVQNNIVIATKFAAYP---------WRL----TPGQFVNACRASLA 153 (308)
Q Consensus 89 ~~DtA~~Yg~~~-~~g~sE-~~lG~~L~~~~~~~~~R~~v~i~tK~~~~~---------~~~----~~~~i~~~~e~sL~ 153 (308)
++.|+..|.++. +.|+.- -+....+.++.+ ..-.+++..+-.-.+. .+. -.+...+.+.+.++
T Consensus 7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r--~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~ 84 (648)
T PRK12267 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKR--LQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWK 84 (648)
T ss_pred EEeeCCCCCCCCcccccchHHHHHHHHHHHHH--hcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 567777777754 555533 233444433210 1223444444332110 112 23556778899999
Q ss_pred hhCCCcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEE
Q 021767 154 RLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAV 196 (308)
Q Consensus 154 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i 196 (308)
+||+++ |.+ .+ ..++.....+.+.+.+|++.|.|-.-
T Consensus 85 ~lgI~~-D~f-~r----Tt~~~h~~~v~~~~~~L~~kG~IY~~ 121 (648)
T PRK12267 85 KLDISY-DKF-IR----TTDERHKKVVQKIFEKLYEQGDIYKG 121 (648)
T ss_pred HcCCCC-CCC-ee----CCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999964 743 22 11222334577889999999998743
No 394
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=20.13 E-value=5.7e+02 Score=23.00 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=38.6
Q ss_pred CcccEEEecCCCCCCCChhHHHHHHHHHHHHHcCCccEEEeecCCHHHHHHHH
Q 021767 158 EQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIH 210 (308)
Q Consensus 158 d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 210 (308)
...+++++..|....++.....+|+.+.++++ | +.|=+++|..+.+.++.
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~--~tiii~sH~l~~~~~~~ 199 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-D--KTIILSTHIMQEVEAIC 199 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-C--CEEEEEcCCHHHHHHhC
Confidence 45688999988776677666778999999864 5 56888999988777653
No 395
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=20.04 E-value=4.5e+02 Score=20.77 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=38.4
Q ss_pred CCCCEEEEec-cCCCCCCCChHHHHHHHHHHHHhhC--CCcccEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 021767 122 VQNNIVIATK-FAAYPWRLTPGQFVNACRASLARLQ--IEQIGIGQLHWSTANYAPPQELALWNGLVAMYE 189 (308)
Q Consensus 122 ~R~~v~i~tK-~~~~~~~~~~~~i~~~~e~sL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~ 189 (308)
.|=.+.|+-| ++. ...++.+++.+.++.+... ..-.|++++-.+... ..+..++.+.|..|.+
T Consensus 46 ~RiG~~VsKK~~g~---AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~--~~~~~~l~~~l~~ll~ 111 (130)
T PRK00396 46 PRLGLVIGKKSVKL---AVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLG--ELENPELHQQFGKLWK 111 (130)
T ss_pred ccEEEEEecccCcc---HhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcc--cCCHHHHHHHHHHHHH
Confidence 4556777777 442 2367788888888876543 245799999877432 2333445555555443
No 396
>PLN02591 tryptophan synthase
Probab=20.03 E-value=6.2e+02 Score=22.43 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHHcCCCceeCCcCCCCC
Q 021767 71 MDSQLQQTFNLAVENGINLFDTADSYGTG 99 (308)
Q Consensus 71 ~~~~~~~~l~~A~e~Gi~~~DtA~~Yg~~ 99 (308)
+.+...++++...+.|++.+.-.--|.+|
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP 42 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDP 42 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCC
Confidence 45677888888888999998877666553
No 397
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.01 E-value=1.2e+02 Score=26.75 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=14.2
Q ss_pred ChHHHHHHHHHHHHHhCCC
Q 021767 285 GLKPLLRSLKEIAERRGKT 303 (308)
Q Consensus 285 ~~~~~~~~l~~ia~~~g~s 303 (308)
...+.++.+..+|++.|-.
T Consensus 191 ~V~kql~~~~~~Ark~G~a 209 (250)
T COG2861 191 AVLKQLDAAEKLARKNGSA 209 (250)
T ss_pred HHHHHHHHHHHHHHhcCce
Confidence 3556678888999988754
Done!