BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021768
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 25/93 (26%)
Query: 30 DLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFIF 89
+ YEVLGV+ +AS ++IKKAY KLALR HPDKNP +
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN------------------------ 45
Query: 90 FEQEAKEKFQQLQKVISILGDEEKRALYDQTGC 122
++EA++KF+ + + +L D +KR+LYD+ GC
Sbjct: 46 -KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 26/93 (27%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFI 88
+D YE+LGV +TA ++EI+KAY +LA++ HPD+N GD
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD----------------------- 39
Query: 89 FFEQEAKEKFQQLQKVISILGDEEKRALYDQTG 121
+EA+ KF+++++ +L D +KRA YDQ G
Sbjct: 40 ---KEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 26/93 (27%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFI 88
+D YE+LGV +TA ++EI+KAY +LA++ HPD+N GD
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD----------------------- 39
Query: 89 FFEQEAKEKFQQLQKVISILGDEEKRALYDQTG 121
+EA+ KF+++++ +L D +KRA YDQ G
Sbjct: 40 ---KEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 26/93 (27%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFI 88
+D YE+LGV +TA ++EI+KAY +LA++ HPD+N GD
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD----------------------- 39
Query: 89 FFEQEAKEKFQQLQKVISILGDEEKRALYDQTG 121
+EA+ KF+++++ +L D +KRA YDQ G
Sbjct: 40 ---KEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 69
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 46/93 (49%), Gaps = 26/93 (27%)
Query: 30 DLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFIF 89
D Y++LGV R ASQ+EIKKAYY+LA + HPD N D
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----------------------- 44
Query: 90 FEQEAKEKFQQLQKVISILGDEEKRALYDQTGC 122
+AKEKF QL + +L DE KR YD G
Sbjct: 45 ---KAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 46/97 (47%), Gaps = 31/97 (31%)
Query: 28 DKDLYEVLGVERTASQQEIKKAYYKLALRLHPDKN--PGDEVRRKLSYLHGRSFLFSVVI 85
D D Y VLGV RTASQ +IKKAY KLA HPDKN PG
Sbjct: 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG--------------------- 54
Query: 86 YFIFFEQEAKEKFQQLQKVISILGDEEKRALYDQTGC 122
A+++F Q+ K IL +EEKR YD G
Sbjct: 55 --------AEDRFIQISKAYEILSNEEKRTNYDHYGS 83
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 25/93 (26%)
Query: 30 DLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFIF 89
D YEVL V R AS + IKKAY KLAL+ HPDKNP +
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN------------------------ 45
Query: 90 FEQEAKEKFQQLQKVISILGDEEKRALYDQTGC 122
++EA+ +F+Q+ + +L D +KR +YD+ G
Sbjct: 46 -KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 29/90 (32%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFIFFE 91
Y+VLGV+ AS E+KKAY K+AL+ HPDKNP
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNP---------------------------- 42
Query: 92 QEAKEKFQQLQKVISILGDEEKRALYDQTG 121
+ E+F+Q+ + +L DE+KR +YDQ G
Sbjct: 43 -DGAEQFKQISQAYEVLSDEKKRQIYDQGG 71
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 26/93 (27%)
Query: 31 LYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFIFF 90
LY VLG+++ A+ +IKK+Y KLAL+ HPDKNP +
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN------------------------- 53
Query: 91 EQEAKEKFQQLQKVISILGDEEKRALYDQTGCV 123
EA +KF+++ +IL D KR +YD+ G +
Sbjct: 54 -PEAADKFKEINNAHAILTDATKRNIYDKYGSL 85
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 29/90 (32%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFIFFE 91
Y+VLGV+ A+Q+E+KKAY KLAL+ HPDKNP +
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE-------------------------- 42
Query: 92 QEAKEKFQQLQKVISILGDEEKRALYDQTG 121
EKF+Q+ + +L D +KR LYD+ G
Sbjct: 43 ---GEKFKQISQAYEVLSDAKKRELYDKGG 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 31/95 (32%)
Query: 30 DLYEVLGVERTASQQEIKKAYYKLALRLHPDKN--PGDEVRRKLSYLHGRSFLFSVVIYF 87
D YE+LGV R AS +++KKAY +LAL+ HPDKN PG
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG----------------------- 44
Query: 88 IFFEQEAKEKFQQLQKVISILGDEEKRALYDQTGC 122
A E F+ + ++L + EKR YDQ G
Sbjct: 45 ------ATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 29/92 (31%)
Query: 31 LYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFIFF 90
LY++LGV +A++QE+KK Y K AL+ HPDK GD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD------------------------- 44
Query: 91 EQEAKEKFQQLQKVISILGDEEKRALYDQTGC 122
EKF+++ + IL D +KR +YDQ G
Sbjct: 45 ----TEKFKEISEAFEILNDPQKREIYDQYGL 72
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 26/94 (27%)
Query: 28 DKDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYF 87
D++ Y +LGV +TAS +EI++A+ KLAL+LHPDKNP +
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP--------------------- 58
Query: 88 IFFEQEAKEKFQQLQKVISILGDEEKRALYDQTG 121
A F ++ + +L DE+ R YD+ G
Sbjct: 59 -----NAHGDFLKINRAYEVLKDEDLRKKYDKYG 87
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 31/95 (32%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKN--PGDEVRRKLSYLHGRSFLFSVVIY 86
KD Y+ LG+ R AS +EIK+AY + ALR HPDKN PG
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG---------------------- 40
Query: 87 FIFFEQEAKEKFQQLQKVISILGDEEKRALYDQTG 121
A+EKF+++ + +L D KR ++D+ G
Sbjct: 41 -------AEEKFKEIAEAYDVLSDPRKREIFDRYG 68
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 26/93 (27%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFI 88
++ Y +LGV +TAS +EI++A+ KLAL+LHPDKNP +
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN----------------------- 38
Query: 89 FFEQEAKEKFQQLQKVISILGDEEKRALYDQTG 121
A F ++ + +L DE+ R YD+ G
Sbjct: 39 ---PNAHGDFLKINRAYEVLKDEDLRKKYDKYG 68
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 25/90 (27%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFIFFE 91
YE+L V R+AS +IKKAY + AL+ HPDKNP + +
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-------------------------K 39
Query: 92 QEAKEKFQQLQKVISILGDEEKRALYDQTG 121
+ A++KF+++ + +L D+ KR +YD+ G
Sbjct: 40 EFAEKKFKEVAEAYEVLSDKHKREIYDRYG 69
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 27/90 (30%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFIFFE 91
Y++LGV ++AS+++IKKA++KLA++ HPDKN
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK---------------------------S 42
Query: 92 QEAKEKFQQLQKVISILGDEEKRALYDQTG 121
+A+ KF+++ + L D +R YD G
Sbjct: 43 PDAEAKFREIAEAYETLSDANRRKEYDTLG 72
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 48.1 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 27/100 (27%)
Query: 31 LYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFIFF 90
LY++LGV TA+Q +IK AYY+ HPD+N G
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG-------------------------- 52
Query: 91 EQEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAG 130
EA E+F ++ + +LG R YD+ G + D DL G
Sbjct: 53 SAEAAERFTRISQAYVVLGSATLRRKYDR-GLLSDEDLRG 91
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 20/104 (19%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFI 88
KD Y +LG + +A+ ++K+ Y KL L HPDK D +
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTV----------------- 52
Query: 89 FFEQEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDV 132
+E +KF ++ + ILG+EE + YD C DD G V
Sbjct: 53 ---EECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPV 93
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPD 60
+D Y++LGV+R A +QEI KAY KLAL+ HPD
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPD 60
+D Y++LGV+R A +QEI KAY KLAL+ HPD
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDK--NPGDE 66
KD +++LGV+ AS+ E+ KAY KLA+ LHPDK PG E
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSE 66
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFI 88
KD Y +LG + +A+ ++K+ Y KL L HPDK D +
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTM----------------- 58
Query: 89 FFEQEAKEKFQQLQKVISILGDEEKRALYD 118
+E +KF ++ + ILG+EE + YD
Sbjct: 59 ---EECMQKFIEIDQAWKILGNEETKKKYD 85
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 27/91 (29%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFI 88
KD Y +LGV+ T + IK AY +LA + HPD +
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPD---------------------------V 60
Query: 89 FFEQEAKEKFQQLQKVISILGDEEKRALYDQ 119
E +A+ KF+ L + +L DE++RA YDQ
Sbjct: 61 SKENDAEAKFKDLAEAWEVLKDEQRRAEYDQ 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 27/91 (29%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFI 88
KD Y ++GV+ T + IK AY +LA + HPD +
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD---------------------------V 37
Query: 89 FFEQEAKEKFQQLQKVISILGDEEKRALYDQ 119
E +A+ +F+++ + +L DE++RA YDQ
Sbjct: 38 SKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 68
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 26/91 (28%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLHGRSFLFSVVIYFI 88
+D Y +LG + +S ++I + AL HPDK+P +
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN----------------------- 56
Query: 89 FFEQEAKEKFQQLQKVISILGDEEKRALYDQ 119
+A E FQ+LQK IL +EE RA YD
Sbjct: 57 ---PKAVETFQKLQKAKEILTNEESRARYDH 84
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 31 LYEVLGVERTASQQ--EIKKAYYKLALRLHPDKNPGDEVRRKLSYLH 75
L ++LG+ER+A ++KAY K HPDK +E +K++ L+
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLY 56
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 31 LYEVLGVERTA--SQQEIKKAYYKLALRLHPDKNPGDEVRRKLSYLH 75
L ++LG+ER+A + ++KAY K HPDK +E +K++ L+
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLY 59
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPG 64
++ +G+ + +++KK Y K L +HPDK G
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATG 152
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPG 64
++ +G+ + +++KK Y K L +HPDK G
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATG 84
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 82 SVVIYFIFFEQEAKEKF---QQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLKE 138
++++Y + EQEA EK ++ V+S +G E ++ DQ V G + + L
Sbjct: 62 AIIVYGLINEQEAMEKILKEHEIDIVVSTVGGE---SILDQIALVKAMKAVGTIKRFLPS 118
Query: 139 FFG 141
FG
Sbjct: 119 EFG 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,609,437
Number of Sequences: 62578
Number of extensions: 283961
Number of successful extensions: 638
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 42
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)