BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021770
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 28 SDSSSADHLVVMVHGILGSSS----DWKFGAKQFVKRLPDKVFVHCSERNMSKLTLDGVD 83
S + + +V+ HG+LG + D+ FG ++R D V+ +E + LD +
Sbjct: 1 STYTQTKYPIVLAHGMLGFDNILGVDYWFGIPSALRR--DGAQVYVTEVSQ----LDTSE 54
Query: 84 VMGERLAQEVLEVIERKRNLRKISFVAHSVGGLVARY 120
V GE+L Q+V E++ K++ + HS GG RY
Sbjct: 55 VRGEQLLQQVEEIVALSGQ-PKVNLIGHSHGGPTIRY 90
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 37 VVMVHGILGSSS-----DWKFGAKQFVKRLPDKVFVHCSERNMSKL-TLDGVDVMGERLA 90
V++VHG+ G+ D+ +G + ++ KV+V N+S + DG + GE+L
Sbjct: 11 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYV----ANLSGFQSDDGPNGRGEQLL 66
Query: 91 QEVLEVIERKRNLRKISFVAHSVGGLVARY 120
V +V+ K++ + HS GGL +RY
Sbjct: 67 AYVKQVLA-ATGATKVNLIGHSQGGLTSRY 95
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 37 VVMVHGILGSSS-----DWKFGAKQFVKRLPDKVFVHCSERNMSKL-TLDGVDVMGERLA 90
V++VHG+ G+ D+ +G + ++ KV+V N+S + DG + GE+L
Sbjct: 11 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYV----ANLSGFQSDDGPNGRGEQLL 66
Query: 91 QEVLEVIERKRNLRKISFVAHSVGGLVARY 120
V +V+ K++ + HS GGL +RY
Sbjct: 67 AYVKQVLA-ATGATKVNLIGHSQGGLTSRY 95
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 37 VVMVHGILGSSS-----DWKFGAKQFVKRLPDKVFVHCSERNMSKL-TLDGVDVMGERLA 90
V++VHG+ G+ D+ +G + ++ KV+V N+S + DG + GE+L
Sbjct: 10 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYV----ANLSGFQSDDGPNGRGEQLL 65
Query: 91 QEVLEVIERKRNLRKISFVAHSVGGLVARY 120
V +V+ K++ + HS GGL +RY
Sbjct: 66 AYVKQVLA-ATGATKVNLIGHSQGGLTSRY 94
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 37 VVMVHGILGSSS-----DWKFGAKQFVKRLPDKVFVHCSERNMSKL-TLDGVDVMGERLA 90
+++VHG+ G+ ++ +G ++ +++ V+V N+S + DG + GE+L
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYV----ANLSGFQSDDGPNGRGEQLL 66
Query: 91 QEVLEVIERKRNLRKISFVAHSVGGLVARY 120
V V+ K++ V HS GGL +RY
Sbjct: 67 AYVKTVLA-ATGATKVNLVGHSQGGLTSRY 95
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 37 VVMVHGILGSSS-----DWKFGAKQFVKRLPDKVFVHCSERNMSKL-TLDGVDVMGERLA 90
+++VHG+ G+ ++ +G ++ +++ V+V N+S + DG + GE+L
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYV----ANLSGFQSDDGPNGRGEQLL 66
Query: 91 QEVLEVIERKRNLRKISFVAHSVGGLVARY 120
V V+ K++ V HS GGL +RY
Sbjct: 67 AYVKTVLA-ATGATKVNLVGHSQGGLTSRY 95
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio Cholerae,
Pfam Abhydrolase
Length = 264
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 22/99 (22%)
Query: 36 LVVMVHGILGSSSDWKFGAKQFVKRLPDKVFVHCSERNMSKLTLD--GVDVMGERLA--- 90
LVV+VHG+LGS +DW+ V H + + LTLD G ER
Sbjct: 18 LVVLVHGLLGSGADWQ------------PVLSHLARTQCAALTLDLPGHGTNPERHCDNF 65
Query: 91 QEVLEVIERKRNLRKIS-----FVAHSVGGLVARYAIGK 124
E +E IE+ S V +S+GG + + + +
Sbjct: 66 AEAVEXIEQTVQAHVTSEVPVILVGYSLGGRLIXHGLAQ 104
>pdb|3D2C|A Chain A, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|B Chain B, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|C Chain C, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|D Chain D, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|E Chain E, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|F Chain F, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|G Chain G, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|H Chain H, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|I Chain I, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|J Chain J, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|K Chain K, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|L Chain L, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 37 VVMVHGILGSSSDWKFGAKQFVKRLP---DKVFVHCSERNMSKLTLDGVDVMGERLAQEV 93
VVMVHGI GSSS+++ G K ++ DK++ + + + V+ R Q+V
Sbjct: 6 VVMVHGIGGSSSNFE-GIKSYLVSQGWSRDKLYA-VDFWDKTGTNYNNGPVL-SRFVQKV 62
Query: 94 LEVIERKRNLRKISFVAHSVGGLVARYAIGKLYRPPKIEN 133
L+ + +K+ VAHS+GG Y I L K+ N
Sbjct: 63 LD----ETGAKKVDIVAHSMGGANTLYYIKYLDGGNKVAN 98
>pdb|3QMM|A Chain A, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3QMM|B Chain B, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 37 VVMVHGILGSSSDWKFGAKQFVKRLP---DKVFVHCSERNMSKLTLDGVDVMGERLAQEV 93
VVMVHGI GSSS+++ G K ++ DK++ + + + V+ R Q+V
Sbjct: 6 VVMVHGIGGSSSNFE-GIKSYLVSQGWSRDKLYA-VDFWDKTGTNYNNGPVL-SRFVQKV 62
Query: 94 LEVIERKRNLRKISFVAHSVGGLVARYAIGKLYRPPKIEN 133
L+ + +K+ VAHS+GG Y I L K+ N
Sbjct: 63 LD----ETGAKKVDIVAHSMGGANTLYYIKYLDGGNKVAN 98
>pdb|3D2B|A Chain A, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2B|B Chain B, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 37 VVMVHGILGSSSDWKFGAKQFVKRLP---DKVFVHCSERNMSKLTLDGVDVMGERLAQEV 93
VVMVHGI G+SS++ G K ++ DK++ + + + V+ R Q+V
Sbjct: 6 VVMVHGIGGASSNFA-GIKSYLVSQGWSRDKLYA-VDFWDKTGTNYNNGPVL-SRFVQKV 62
Query: 94 LEVIERKRNLRKISFVAHSVGGLVARYAIGKLYRPPKIEN 133
L+ + +K+ VAHS+GG Y I L K+ N
Sbjct: 63 LD----ETGAKKVDIVAHSMGGANTLYYIKYLDGGNKVAN 98
>pdb|2W4L|A Chain A, Human Dcmp Deaminase
pdb|2W4L|B Chain B, Human Dcmp Deaminase
pdb|2W4L|C Chain C, Human Dcmp Deaminase
pdb|2W4L|D Chain D, Human Dcmp Deaminase
pdb|2W4L|E Chain E, Human Dcmp Deaminase
pdb|2W4L|F Chain F, Human Dcmp Deaminase
Length = 178
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 10/39 (25%)
Query: 242 NACYDHIVGWRTSSIRRNSELPKWEDSLDEKYPHIVHHE 280
N C D ++ WR ++ E+ LD KYP++ H E
Sbjct: 55 NGCSDDVLPWRRTA----------ENKLDTKYPYVCHAE 83
>pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NIR|B Chain B, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1BL9|A Chain A, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1BL9|B Chain B, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1NNO|A Chain A, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|B Chain B, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N15|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1GJQ|B Chain B, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
Length = 543
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 33/192 (17%)
Query: 54 AKQFVKRLPDKVFVHCSERNMSK--LTLDGVDV---MGERLAQEVLEVIERKRNLRKISF 108
+K+ VK + VH S + S L + G D M + A+E +V E K + S
Sbjct: 168 SKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 227
Query: 109 VAHSVGGLVARYAIGKLYRPPK--IENGEESSADTSSENSRGTMAGLEAINFITVATPHL 166
+ G RY I Y PP+ I +GE LE ++ +
Sbjct: 228 ESSKFKGYEDRYTIAGAYWPPQFAIMDGET----------------LEPKQIVSTRGMTV 271
Query: 167 GSRGNKQVPFLFGVTAFEKAANFVIHLIFRRTGRHLFLNDND--------EGRPPLLRRM 218
++ P + + A + F++++ + TG+ L +N D G P L
Sbjct: 272 DTQTYHPEPRVAAIIASHEHPEFIVNV--KETGKVLLVNYKDIDNLTVTSIGAAPFLHDG 329
Query: 219 VEDEDENYFMSA 230
D YFM+A
Sbjct: 330 GWDSSHRYFMTA 341
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 114 GGLVARYAIGKLYRPPKIENGEESSADTSSENSRGTMAGLEAINFITVATPHLGSRGNKQ 173
GGL A + RP +E E AD E+ RG A LE I TP +GN
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA-LELAREILKTTP----KGN-- 162
Query: 174 VPFLFG-VTAFEKAANFVIHLIF 195
P FG EK N + +F
Sbjct: 163 -PMQFGRRIGLEKVINVLEGQVF 184
>pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 33/192 (17%)
Query: 54 AKQFVKRLPDKVFVHCSERNMSK--LTLDGVDV---MGERLAQEVLEVIERKRNLRKISF 108
+K+ VK + VH S + S L + G D M + A+E +V E K + S
Sbjct: 168 SKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 227
Query: 109 VAHSVGGLVARYAIGKLYRPPK--IENGEESSADTSSENSRGTMAGLEAINFITVATPHL 166
+ G RY I Y PP+ I +GE LE ++ +
Sbjct: 228 ESSKFKGYEDRYTIAGAYWPPQFAIMDGET----------------LEPKQIVSTRGMTV 271
Query: 167 GSRGNKQVPFLFGVTAFEKAANFVIHLIFRRTGRHLFLNDND--------EGRPPLLRRM 218
++ P + + A + F++++ + TG+ L +N D G P L
Sbjct: 272 DTQTYHPEPRVAAIIASHEHPEFIVNV--KETGKVLLVNYKDIDNLTVTSIGAAPFLHDG 329
Query: 219 VEDEDENYFMSA 230
D YFM+A
Sbjct: 330 GWDSSHRYFMTA 341
>pdb|4GW3|A Chain A, Crystal Structure Of The Lipase From Proteus Mirabilis
pdb|4GXN|A Chain A, Diethylphosphonate Inhibited Structure Of The Proteus
Mirabilis Lipase
Length = 307
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 32 SADHLVVMVHGILGSSS----DWKFGAKQFVKRLPDKVFVHCSERNMSKLTLDGVDVMGE 87
S + +V+VHG+ G + + +G +++ +VF S + +V G+
Sbjct: 22 STKYPIVLVHGLAGFNEIVGFPYFYGIADALRQDGHQVF------TASLSAFNSNEVRGK 75
Query: 88 RLAQEVLEVIERKRNLRKISFVAHSVGGLVARY 120
+L Q V +++ + +K++F+ HS G L RY
Sbjct: 76 QLWQFVQTLLQETQ-AKKVNFIGHSQGPLACRY 107
>pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 33/192 (17%)
Query: 54 AKQFVKRLPDKVFVHCSERNMSK--LTLDGVDV---MGERLAQEVLEVIERKRNLRKISF 108
+K+ VK + VH S + S L + G D M + A+E +V E K + S
Sbjct: 168 SKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 227
Query: 109 VAHSVGGLVARYAIGKLYRPPK--IENGEESSADTSSENSRGTMAGLEAINFITVATPHL 166
+ G RY I Y PP+ I +GE LE ++ +
Sbjct: 228 ESSKFKGYEDRYTIAGAYWPPQFAIMDGET----------------LEPKQIVSTRGMTV 271
Query: 167 GSRGNKQVPFLFGVTAFEKAANFVIHLIFRRTGRHLFLNDND--------EGRPPLLRRM 218
++ P + + A + F++++ + TG+ L +N D G P L
Sbjct: 272 DTQTYHPEPRVAAIIASHEHPEFIVNV--KETGKVLLVNYKDIDNLTVTSIGAAPFLADG 329
Query: 219 VEDEDENYFMSA 230
D YFM+A
Sbjct: 330 GWDSSHRYFMTA 341
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 114 GGLVARYAIGKLYRPPKIENGEESSADTSSENSRGTMAGLEAINFITVATPHLGSRGNKQ 173
GGL A + RP +E E AD E+ RG A LE I TP +GN
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA-LELAREILKTTP----KGN-- 161
Query: 174 VPFLFG-VTAFEKAANFVIHLIF 195
P FG EK N + +F
Sbjct: 162 -PMQFGRRIGLEKVINVLEGQVF 183
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
Query: 78 TLDGVDVMGERLAQEVLEVIERKRNLRKISFVAHSVGGLVARYA 121
TLDG AQ+VL+V E +L++ FV HSVG L+ A
Sbjct: 72 TLDG-------YAQDVLDVCE-ALDLKETVFVGHSVGALIGMLA 107
>pdb|1T2N|A Chain A, Structure Of A Thermostable Triple Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 37 VVMVHGILGSSSDWKFGAKQFVKRLP---DKVFVHCSERNMSKLTLDGVDVMGERLAQEV 93
VVMVHGI G+S ++ G K ++ DK++ + + + V+ R Q+V
Sbjct: 6 VVMVHGIGGASFNFA-GIKSYLVSQGWSRDKLYA-VDFWDKTGTNYNNGPVL-SRFVQKV 62
Query: 94 LEVIERKRNLRKISFVAHSVGGLVARYAIGKLYRPPKIEN 133
L+ + +K+ VAHS+GG Y I L K+ N
Sbjct: 63 LD----ETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVAN 98
>pdb|1T4M|A Chain A, Structure Of A Thermostable Double Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 37 VVMVHGILGSSSDWKFGAKQFVKRLP---DKVFVHCSERNMSKLTLDGVDVMGERLAQEV 93
VVMVHGI G+S ++ G K ++ DK++ + + + V+ R Q+V
Sbjct: 6 VVMVHGIGGASFNFA-GIKSYLVSQGWSRDKLYA-VDFWDKTGTNYNNGPVL-SRFVQKV 62
Query: 94 LEVIERKRNLRKISFVAHSVGGLVARYAIGKLYRPPKIEN 133
L+ + +K+ VAHS+GG Y I L K+ N
Sbjct: 63 LD----ETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVAN 98
>pdb|1I6W|A Chain A, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1I6W|B Chain B, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1ISP|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase At 1.3a
Resolution
pdb|1R4Z|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R4Z|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
Length = 181
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 37 VVMVHGILGSSSDWKFGAKQFVKRLP---DKVFVHCSERNMSKLTLDGVDVMGERLAQEV 93
VVMVHGI G+S ++ G K ++ DK++ + + + V+ R Q+V
Sbjct: 6 VVMVHGIGGASFNFA-GIKSYLVSQGWSRDKLYA-VDFWDKTGTNYNNGPVL-SRFVQKV 62
Query: 94 LEVIERKRNLRKISFVAHSVGGLVARYAIGKLYRPPKIEN 133
L+ + +K+ VAHS+GG Y I L K+ N
Sbjct: 63 LD----ETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVAN 98
>pdb|3D2A|A Chain A, Structure Of 1-17a4, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 37 VVMVHGILGSSSDWKFGAKQFVKRLP---DKVFVHCSERNMSKLTLDGVDVMGERLAQEV 93
VVMVHGI G+S ++ G K ++ DK++ + + + V+ R Q+V
Sbjct: 6 VVMVHGIGGASFNFA-GIKSYLVSQGWSRDKLYA-VDFWDKTGTNYNNGPVL-SRFVQKV 62
Query: 94 LEVIERKRNLRKISFVAHSVGGLVARYAIGKLYRPPKIEN 133
L+ + +K+ VAHS+GG Y I L K+ N
Sbjct: 63 LD----ETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVAN 98
>pdb|2P4Z|A Chain A, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
pdb|2P4Z|B Chain B, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
Length = 284
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 47 SSDWKFGAKQFV-----KRLPDK----VFVHCSERNMSKLTLDGVDVMGERLAQEVLEVI 97
+ D +F K F KR+PDK VFV E DG++V+ +L ++
Sbjct: 155 TYDNEFTTKNFFVEKEGKRIPDKFLDEVFVVVKEE-------DGINVVTGCSHAGILNIL 207
Query: 98 ERKRNLRKISFVAHSVGGLVAR 119
E RN +S++ +GG R
Sbjct: 208 ETARNRFGVSYIKSLIGGFHLR 229
>pdb|2QXT|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 4.5
pdb|2QXT|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 4.5
pdb|2QXU|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|C Chain C, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|D Chain D, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|E Chain E, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|F Chain F, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|G Chain G, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|H Chain H, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
Length = 179
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 37 VVMVHGILGSSSDWKFGAKQFVKRLP---DKVFVHCSERNMSKLTLDGVDVMGERLAQEV 93
VVMVHGI G+S ++ G K ++ DK++ + + + V+ R Q+V
Sbjct: 4 VVMVHGIGGASFNFA-GIKSYLVSQGWSRDKLYA-VDFWDKTGTNYNNGPVL-SRFVQKV 60
Query: 94 LEVIERKRNLRKISFVAHSVGGLVARYAIGKLYRPPKIEN 133
L+ + +K+ VAHS+GG Y I L K+ N
Sbjct: 61 LD----ETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVAN 96
>pdb|3QZU|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
pdb|3QZU|B Chain B, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
Length = 181
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 22/106 (20%)
Query: 37 VVMVHGILGSSSDWKFGAKQFVKRLPDKVFVHCSERNMSKLTLDGVDVMG---------E 87
VVMVHGI G+S ++ G K ++ V S+ ++ +D D G
Sbjct: 6 VVMVHGIGGASFNFA-GIKSYL------VSQGWSQNDL--YAVDFWDKTGTNYNNGPVLS 56
Query: 88 RLAQEVLEVIERKRNLRKISFVAHSVGGLVARYAIGKLYRPPKIEN 133
R Q+VL+ + +K+ VAHS+GG Y I L K+ N
Sbjct: 57 RFVQKVLD----ETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVAN 98
>pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 51 KFGAKQFVKRLPDKVFVHCSERN---MSKLTLDGVDVMGERLAQEVLEVIERKRNLRKIS 107
+FG + VK+L D F+H ER+ + ++G D+ GE + + ++KR RK
Sbjct: 34 QFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQ 93
Query: 108 FVAHS 112
A S
Sbjct: 94 RQAAS 98
>pdb|3T2G|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Y229f Variant With Dhap
Length = 407
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 85 MGERLAQEVLEVIERKRNLRKISFVAHSVGGLV---ARYAIGKLYR 127
M E EVL+V+E K L K A+S+ GL+ RY I K++R
Sbjct: 162 MHEGFIFEVLDVVEHKVYLLKTPEDAYSLLGLIGTTGRYIIRKVFR 207
>pdb|3T2B|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Ligand Free
pdb|3T2C|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Dhap-Bound Form
pdb|3T2D|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Fbp-Bound Form
pdb|3T2E|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, F6p-Bound Form
pdb|3T2F|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Soaked With Edta And Dhap
Length = 407
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 85 MGERLAQEVLEVIERKRNLRKISFVAHSVGGLV---ARYAIGKLYR 127
M E EVL+V+E K L K A+S+ GL+ RY I K++R
Sbjct: 162 MHEGFIFEVLDVVEHKVYLLKTPEDAYSLLGLIGTTGRYIIRKVFR 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,359,049
Number of Sequences: 62578
Number of extensions: 372921
Number of successful extensions: 926
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 915
Number of HSP's gapped (non-prelim): 31
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)