BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021772
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 6 GFRFHPTDEEIIL-LLTLKRFDPGFSVRTIKEIDLYSFEPWELPWHSEIQSEEEVWYFFC 64
GFRF+PTDEE+++ L K FS++ I EIDLY F+PW LP + + E+E WYFF
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP-NKALFGEKE-WYFFS 77
Query: 65 EPYYKYAKSKRANRRTKEGYWKKTGNGSKIKRKYSTEV--IGTKKILSFLRDDTAAKKAK 122
KY R NR GYWK TG I STE +G KK L F A K K
Sbjct: 78 PRDRKYPNGSRPNRVAGSGYWKATGTDKII----STEGQRVGIKKALVFY-IGKAPKGTK 132
Query: 123 TEWVIHEIAV-----EDSPDYEKDFVVCRLERKR 151
T W++HE + + D+V+CR+ +K+
Sbjct: 133 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 6 GFRFHPTDEEIIL-LLTLKRFDPGFSVRTIKEIDLYSFEPWELPWHSEIQSEEEVWYFFC 64
GFRF+PTDEE+++ L K FS++ I EIDLY F+PW LP + + E+E WYFF
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP-NKALFGEKE-WYFFS 80
Query: 65 EPYYKYAKSKRANRRTKEGYWKKTGNGSKIKRKYSTE--VIGTKKILSFLRDDTAAKKAK 122
KY R NR GYWK TG I STE +G KK L F A K K
Sbjct: 81 PRDRKYPNGSRPNRVAGSGYWKATGTDKII----STEGQRVGIKKALVFY-IGKAPKGTK 135
Query: 123 TEWVIHEIAV-----EDSPDYEKDFVVCRLERKR 151
T W++HE + + D+V+CR+ +K+
Sbjct: 136 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 169
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Query: 6 GFRFHPTDEEII-LLLTLKRFDPGFSVRTIKEIDLYSFEPWELPWHSEIQSEEEVWYFFC 64
GFRFHPTD+E++ L K V I E+DLY F+PW+LP + + E WYFF
Sbjct: 18 GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE--WYFFT 75
Query: 65 EPYYKYAKSKRANRRTKEGYWKKTGNGSKIKRKYSTEVIGTKKILSFLRDDTAAKKAKTE 124
KY R NR GYWK TG + + T +G KK L F A + KT+
Sbjct: 76 PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT--LGIKKALVFY-AGKAPRGVKTD 132
Query: 125 WVIHEIAVEDSPDYEK----------DFVVCRLERKRD 152
W++HE + D+ D+V+CRL K++
Sbjct: 133 WIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|1XM8|B Chain B, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|2Q42|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
pdb|2Q42|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
Length = 254
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 84 YWKKTGNGSKIKRKYSTEVIGTKKILSFLRDDTAAKKAKTEWVI--HEIAVEDSPDYEKD 141
++ TG ++K +Y +VIG+ + A K +W+ HE+ V D+P + K
Sbjct: 56 HYDHTGGNLELKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKG 115
Query: 142 FV 143
+
Sbjct: 116 HI 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,321,876
Number of Sequences: 62578
Number of extensions: 373631
Number of successful extensions: 544
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 7
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)